Citrus Sinensis ID: 013204
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 447 | 2.2.26 [Sep-21-2011] | |||||||
| Q84P52 | 520 | Gamma aminobutyrate trans | N/A | no | 1.0 | 0.859 | 0.863 | 0.0 | |
| Q84P54 | 515 | Gamma aminobutyrate trans | N/A | no | 1.0 | 0.867 | 0.856 | 0.0 | |
| Q7XN11 | 516 | Gamma-aminobutyrate trans | yes | no | 1.0 | 0.866 | 0.850 | 0.0 | |
| Q01K11 | 516 | Gamma-aminobutyrate trans | N/A | no | 1.0 | 0.866 | 0.847 | 0.0 | |
| Q94CE5 | 504 | Gamma-aminobutyrate trans | yes | no | 1.0 | 0.886 | 0.857 | 0.0 | |
| B8BBZ7 | 510 | Probable gamma-aminobutyr | N/A | no | 1.0 | 0.876 | 0.827 | 0.0 | |
| Q6ZCF0 | 510 | Probable gamma-aminobutyr | no | no | 1.0 | 0.876 | 0.825 | 0.0 | |
| Q84P53 | 458 | Gamma aminobutyrate trans | N/A | no | 0.997 | 0.973 | 0.780 | 0.0 | |
| Q7XN12 | 497 | Probable gamma-aminobutyr | no | no | 1.0 | 0.899 | 0.771 | 0.0 | |
| Q01K12 | 497 | Probable gamma-aminobutyr | N/A | no | 1.0 | 0.899 | 0.771 | 0.0 |
| >sp|Q84P52|GATP3_SOLLC Gamma aminobutyrate transaminase 3, chloroplastic OS=Solanum lycopersicum GN=GABA-TP3 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 830 bits (2145), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/447 (86%), Positives = 427/447 (95%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
MLAPFTAGW STD+ PLVI+KSEGSYVYDVNGKKYLD+LAGLWCT+LGG+EPRLVAAAT
Sbjct: 69 MLAPFTAGWHSTDLEPLVIQKSEGSYVYDVNGKKYLDALAGLWCTSLGGNEPRLVAAATK 128
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
QLN L FYHSFWNR+TKPSLDLAKELL++FTA+KMAK FFTNSGSEANDTQVKLVWYYNN
Sbjct: 129 QLNELAFYHSFWNRSTKPSLDLAKELLDLFTANKMAKAFFTNSGSEANDTQVKLVWYYNN 188
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE 180
ALGRP+KKKFIAR KSYHGSTLI+ASLSGLPALHQ+FDLPAPFVLHTDCPH+WR+ PGE
Sbjct: 189 ALGRPDKKKFIARTKSYHGSTLISASLSGLPALHQQFDLPAPFVLHTDCPHFWRFHQPGE 248
Query: 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240
TEEE+STRLANNLE+LILKEGPETIAAFIAEPV+GAGGVIPPPATYFEKVQA++KKYDIL
Sbjct: 249 TEEEFSTRLANNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAILKKYDIL 308
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
FIADEVIC FGRLGTMFGC+KY+IKPDLVS AKALSS YMPIGA+LVSPEVS+VI+SQSN
Sbjct: 309 FIADEVICGFGRLGTMFGCEKYNIKPDLVSVAKALSSGYMPIGAVLVSPEVSDVIYSQSN 368
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI 360
LG+FSHGFTYSGHPVSCAVA+E LKIYKERNI+EQVN+I+PKFQ+G+KAFSDSPIIGEI
Sbjct: 369 KLGTFSHGFTYSGHPVSCAVALETLKIYKERNIIEQVNRISPKFQEGLKAFSDSPIIGEI 428
Query: 361 RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPE 420
RGTGL+ GTEF DNKSPN+PFPPEWGIGAYFGA+CEKHG+LVRV+GDNIMMSPP+I+S E
Sbjct: 429 RGTGLLHGTEFTDNKSPNDPFPPEWGIGAYFGARCEKHGVLVRVAGDNIMMSPPYILSLE 488
Query: 421 EVDELISKYGKALKATEERVKELKSQQ 447
E+DELI KYGKALK TE RV+ELKSQ+
Sbjct: 489 EIDELIIKYGKALKDTENRVEELKSQK 515
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Transaminase that degrades gamma-amino butyric acid (GABA) and uses pyruvate or glyoxylate as amino-group acceptor. Cannot use beta-alanine, ornithine, acetylornithine, serine, glycine, asparagine, glutamine, glutamate, valine, leucine, isoleucine, methionine, phenylalanine, histidine, lysine, arginine, aspartate, threonine, tyrosine, tryptophan, proline, or cysteine as amino donors. Solanum lycopersicum (taxid: 4081) EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: - |
| >sp|Q84P54|GATP1_SOLLC Gamma aminobutyrate transaminase 1, mitochondrial OS=Solanum lycopersicum GN=GABA-TP1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 825 bits (2131), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/447 (85%), Positives = 425/447 (95%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
MLAPFTAGWQSTDV PL+IEKSEGS+VYD+ G+KY+D+LAGLWCTALGG+EPRLV AAT
Sbjct: 69 MLAPFTAGWQSTDVDPLIIEKSEGSHVYDMQGRKYIDTLAGLWCTALGGNEPRLVDAATK 128
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
QLNTLPFYHSFWNRTTKPSLDLAKELL+MFTA KMAK FFTNSGSEANDTQVKLVWYYNN
Sbjct: 129 QLNTLPFYHSFWNRTTKPSLDLAKELLDMFTAKKMAKAFFTNSGSEANDTQVKLVWYYNN 188
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE 180
ALGRPNKKKFIAR K+YHGSTLI+ASL+GLPALHQ FDLPAPFVLHTDCPHYWRY PGE
Sbjct: 189 ALGRPNKKKFIARAKAYHGSTLISASLTGLPALHQNFDLPAPFVLHTDCPHYWRYHLPGE 248
Query: 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240
TEEE+STRLA NLEDLILKEGPETIAAFIAEPV+GAGGVIPPPATYF+K+QAVVKKYDIL
Sbjct: 249 TEEEFSTRLAKNLEDLILKEGPETIAAFIAEPVMGAGGVIPPPATYFDKIQAVVKKYDIL 308
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
FIADEVICAFGRLGTMFG D Y+IKPDLV+ AKALSSAYMPIGA+LVSPEVS+VIHSQSN
Sbjct: 309 FIADEVICAFGRLGTMFGSDMYNIKPDLVTLAKALSSAYMPIGAVLVSPEVSDVIHSQSN 368
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI 360
LGSFSHGFTYSGHPV+CAVA+EA+KIYKERN+VE+VN+I+PKFQ+G+KAFSDSPIIGEI
Sbjct: 369 KLGSFSHGFTYSGHPVACAVALEAIKIYKERNMVERVNRISPKFQEGLKAFSDSPIIGEI 428
Query: 361 RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPE 420
RG GLIL TEFA+NKSPN+ FPPEWG+GAYFGAQC+K+GMLVRV+GD IMMSPPF+++PE
Sbjct: 429 RGLGLILATEFANNKSPNDHFPPEWGVGAYFGAQCQKNGMLVRVAGDTIMMSPPFVVTPE 488
Query: 421 EVDELISKYGKALKATEERVKELKSQQ 447
E+DELI YGKAL+ TE+RV+ELKSQ+
Sbjct: 489 ELDELIRIYGKALRETEKRVEELKSQK 515
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Transaminase that degrades gamma-amino butyric acid (GABA) and uses pyruvate or glyoxylate as amino-group acceptor. Cannot use beta-alanine, ornithine, acetylornithine, serine, glycine, asparagine, glutamine, glutamate, valine, leucine, isoleucine, methionine, phenylalanine, histidine, lysine, arginine, aspartate, threonine, tyrosine, tryptophan, proline, or cysteine as amino donors. Acts predominantly in vegetative tissues. Solanum lycopersicum (taxid: 4081) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q7XN11|GATP1_ORYSJ Gamma-aminobutyrate transaminase 1, mitochondrial OS=Oryza sativa subsp. japonica GN=OSL2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/447 (85%), Positives = 420/447 (93%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
MLAPFTAGWQSTDVHPLVIE+SEGSYVYD++GKKYLDSLAGLWCTALGGSEPRLV AAT
Sbjct: 68 MLAPFTAGWQSTDVHPLVIERSEGSYVYDIDGKKYLDSLAGLWCTALGGSEPRLVKAATE 127
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
QL+ LPFYHSFWNRTTKPSLDLAKELL MFTA +M KVFFTNSGSEAND+QVKLVWYYNN
Sbjct: 128 QLHKLPFYHSFWNRTTKPSLDLAKELLSMFTAREMGKVFFTNSGSEANDSQVKLVWYYNN 187
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE 180
ALGRP+KKKFIAR KSYHGSTLI+ASLSGLPALHQKFDLPAPFVLHTDCPHYWR+ PGE
Sbjct: 188 ALGRPDKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGE 247
Query: 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240
TEEE++TRLANNLE+LILKEGPETIAAFIAEPV+GAGGVIPPP TYFEKVQA+VKKYDIL
Sbjct: 248 TEEEFATRLANNLEELILKEGPETIAAFIAEPVMGAGGVIPPPKTYFEKVQAIVKKYDIL 307
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
FIADEVI AFGRLGTMFG D Y+IKPDLVS AKALSSAY+PIGAI+VSPE+S+VIHSQSN
Sbjct: 308 FIADEVITAFGRLGTMFGSDMYNIKPDLVSMAKALSSAYVPIGAIMVSPEISDVIHSQSN 367
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI 360
LGSF+HGFTYSGHPV+CAVAIEALKIY+ERNI + V +I+P+FQ+GVKAF+ SPI+GEI
Sbjct: 368 KLGSFAHGFTYSGHPVACAVAIEALKIYQERNIPDHVKQISPRFQEGVKAFAGSPIVGEI 427
Query: 361 RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPE 420
RG GLILGTEFADNKSPN+PFP EWG+GA FGA+C+K GMLVRV+GDNIMMSPP IM+P+
Sbjct: 428 RGVGLILGTEFADNKSPNDPFPAEWGVGAIFGAECQKRGMLVRVAGDNIMMSPPLIMTPD 487
Query: 421 EVDELISKYGKALKATEERVKELKSQQ 447
EV+EL+S YG ALKATEERV ELKS++
Sbjct: 488 EVEELVSIYGDALKATEERVAELKSKK 514
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Transaminase that degrades gamma-amino butyric acid (GABA) and uses pyruvate as amino-group acceptor, but not 2-oxoglutarate. Not involved in the interaction with blast fungus. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q01K11|GATP1_ORYSI Gamma-aminobutyrate transaminase 1, mitochondrial OS=Oryza sativa subsp. indica GN=OsI_17385 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 811 bits (2095), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/447 (84%), Positives = 419/447 (93%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
MLAPFTAGWQSTDVHPLVIE+SEGSYVYD++GKKYLDSLAGLWCTALGGSEPRL AAT
Sbjct: 68 MLAPFTAGWQSTDVHPLVIERSEGSYVYDIDGKKYLDSLAGLWCTALGGSEPRLAKAATE 127
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
QL+ LPFYHSFWNRTTKPSLDLAKELL MFTA +M KVFFTNSGSEAND+QVKLVWYYNN
Sbjct: 128 QLHKLPFYHSFWNRTTKPSLDLAKELLSMFTAREMGKVFFTNSGSEANDSQVKLVWYYNN 187
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE 180
ALGRP+KKKFIAR KSYHGSTLI+ASLSGLPALHQKFDLPAPFVLHTDCPHYWR+ PGE
Sbjct: 188 ALGRPDKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGE 247
Query: 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240
TEEE++TRLANNLE+LILKEGPETIAAFIAEPV+GAGGVIPPP TYFEKVQA+VKKYDIL
Sbjct: 248 TEEEFATRLANNLEELILKEGPETIAAFIAEPVMGAGGVIPPPKTYFEKVQAIVKKYDIL 307
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
FIADEVI AFGRLGTMFG D Y+IKPDLVS AKALSSAY+PIGAI+VSPE+S+VIHSQSN
Sbjct: 308 FIADEVITAFGRLGTMFGSDMYNIKPDLVSMAKALSSAYVPIGAIMVSPEISDVIHSQSN 367
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI 360
LGSF+HGFTYSGHPV+CAVAIEALKIY+ERNI + V +I+P+FQ+GVKAF+ SPI+GEI
Sbjct: 368 KLGSFAHGFTYSGHPVACAVAIEALKIYQERNIPDHVKQISPRFQEGVKAFAGSPIVGEI 427
Query: 361 RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPE 420
RG GLILGTEFADNKSPN+PFP EWG+GA FGA+C+K GMLVRV+GDNIMMSPP IM+P+
Sbjct: 428 RGVGLILGTEFADNKSPNDPFPAEWGVGAIFGAECQKRGMLVRVAGDNIMMSPPLIMTPD 487
Query: 421 EVDELISKYGKALKATEERVKELKSQQ 447
EV+EL+S YG ALKATEERV ELKS++
Sbjct: 488 EVEELVSIYGDALKATEERVAELKSKK 514
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Transaminase that degrades gamma-amino butyric acid (GABA) and uses pyruvate as amino-group acceptor, but not 2-oxoglutarate. Oryza sativa subsp. indica (taxid: 39946) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q94CE5|GATP_ARATH Gamma-aminobutyrate transaminase POP2, mitochondrial OS=Arabidopsis thaliana GN=POP2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/448 (85%), Positives = 415/448 (92%), Gaps = 1/448 (0%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
MLAPFTAGWQS D+ PLVI KSEGSYVYD GKKYLDSLAGLWCTALGG+EPRLV+AA
Sbjct: 55 MLAPFTAGWQSADLDPLVIAKSEGSYVYDDTGKKYLDSLAGLWCTALGGNEPRLVSAAVE 114
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
QLNTLPFYHSFWNRTTKPSLDLAK LLEMFTA+KMAK FFT+ GS+ANDTQVKLVWYYNN
Sbjct: 115 QLNTLPFYHSFWNRTTKPSLDLAKVLLEMFTANKMAKAFFTSGGSDANDTQVKLVWYYNN 174
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE 180
ALGRP KKKFIAR+KSYHGSTLI+ASLSGLP LHQ FDLPAPFVLHTDCPHYWR+ PGE
Sbjct: 175 ALGRPEKKKFIARKKSYHGSTLISASLSGLPPLHQNFDLPAPFVLHTDCPHYWRFHLPGE 234
Query: 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240
TEEE+STRLA NLEDLI+KEGPETI AFIAEPV+GAGGVIPPPATYFEKVQAVVKKYDIL
Sbjct: 235 TEEEFSTRLAKNLEDLIIKEGPETIGAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDIL 294
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
FIADEVICAFGRLGTMFGCDKY+IKPDLV+ AKALSSAYMPIGAIL+S EV++VI+S S+
Sbjct: 295 FIADEVICAFGRLGTMFGCDKYNIKPDLVTLAKALSSAYMPIGAILMSQEVADVINSHSS 354
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGE 359
LG FSHGFTYSGHPVSCAVAIEALKIYKERNI E V K+AP+FQDGVKAF S SPIIGE
Sbjct: 355 KLGVFSHGFTYSGHPVSCAVAIEALKIYKERNIPEYVAKVAPRFQDGVKAFASGSPIIGE 414
Query: 360 IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSP 419
RGTGLILGTEF DNKSPNEPFPPEWG+GA+FGA+C+KHGMLVRV+GD I+MSPP I+SP
Sbjct: 415 TRGTGLILGTEFVDNKSPNEPFPPEWGVGAFFGAECQKHGMLVRVAGDGILMSPPLIISP 474
Query: 420 EEVDELISKYGKALKATEERVKELKSQQ 447
EE+DELIS YGKALKATEE+VKELK+Q
Sbjct: 475 EEIDELISIYGKALKATEEKVKELKAQH 502
|
Transaminase that degrades gamma-amino butyric acid (GABA) and uses pyruvate or glyoxylate as amino-group acceptor, but not 2-oxoglutarate. The pyruvate-dependent activity is reversible while the glyoxylate-dependent activity is irreversible. Cannot use beta-alanine, ornithine, acetylornithine, serine, glycine, asparagine, glutamine, glutamate, valine, leucine, isoleucine, methionine, phenylalanine, histidine, lysine, arginine, aspartate, threonine, tyrosine, tryptophan, proline, or cysteine as amino donors. Modulates steady-state GABA levels in diploid pistil cells and the haploid pollen tube. Involved in the formation of a gradient of GABA along the pollen tube path. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|B8BBZ7|GATP3_ORYSI Probable gamma-aminobutyrate transaminase 3, mitochondrial OS=Oryza sativa subsp. indica GN=OsI_28220 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 805 bits (2078), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/447 (82%), Positives = 416/447 (93%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
MLAPFTAGWQSTD+HPLVI++SEGSYVYD+NGKKY+D+LAGLW TALGG+EPRL+ AAT
Sbjct: 63 MLAPFTAGWQSTDLHPLVIDRSEGSYVYDINGKKYIDALAGLWSTALGGNEPRLIKAATD 122
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
QLN LPFYHSFWNRTTKPSLDLA E+L MFTA +M K+FFTNSGSEAND+QVKLVWYYNN
Sbjct: 123 QLNKLPFYHSFWNRTTKPSLDLANEILSMFTAREMGKIFFTNSGSEANDSQVKLVWYYNN 182
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE 180
ALGRPNKKKFIAR KSYHGSTL++ASLSGLPALHQKFDLPAPFVLHTDCPHYWR+ P E
Sbjct: 183 ALGRPNKKKFIARSKSYHGSTLVSASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPDE 242
Query: 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240
TEEE++TRLA NLE+LILKEGPETIAAFIAEPV+GAGGVIPPP TYFEK+QAV+KKYDIL
Sbjct: 243 TEEEFATRLATNLENLILKEGPETIAAFIAEPVMGAGGVIPPPKTYFEKIQAVLKKYDIL 302
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
IADEVI AFGRLGTMFGCD Y IKPDLVS AKALSSAYMPIGAILVSPE+++VI+SQSN
Sbjct: 303 LIADEVITAFGRLGTMFGCDMYDIKPDLVSIAKALSSAYMPIGAILVSPEITDVIYSQSN 362
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI 360
LGSF+HGFTYSGHPVSCAVAIEALKIYKERNI+E V KIAP+FQ+G+KAFS SPI+GEI
Sbjct: 363 KLGSFAHGFTYSGHPVSCAVAIEALKIYKERNIIEHVQKIAPRFQEGIKAFSGSPIVGEI 422
Query: 361 RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPE 420
RG GLILGTEF DNKSPN+PFP EWG+G+ FGA+CEK GML+RV+GDNIM+SPP IM+P+
Sbjct: 423 RGLGLILGTEFVDNKSPNDPFPAEWGVGSLFGAECEKRGMLIRVAGDNIMLSPPLIMTPD 482
Query: 421 EVDELISKYGKALKATEERVKELKSQQ 447
EV+E+ISKYG ALKATEER+ ELK+++
Sbjct: 483 EVEEIISKYGDALKATEERIAELKAKR 509
|
Transaminase that degrades gamma-amino butyric acid (GABA). Oryza sativa subsp. indica (taxid: 39946) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q6ZCF0|GATP3_ORYSJ Probable gamma-aminobutyrate transaminase 3, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0205900 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/447 (82%), Positives = 415/447 (92%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
MLAPFTAGWQSTD+HPLVI++SEGSYVYD+NGKKY+D+LAGLW TALGG+EPRL+ AAT
Sbjct: 63 MLAPFTAGWQSTDLHPLVIDRSEGSYVYDINGKKYIDALAGLWSTALGGNEPRLIKAATD 122
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
QLN LPFYHSFWNRTTKPSLDLA E+L MFTA +M K+FFTNSGSEAND+QVKLVWYYNN
Sbjct: 123 QLNKLPFYHSFWNRTTKPSLDLANEILSMFTAREMGKIFFTNSGSEANDSQVKLVWYYNN 182
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE 180
ALGRPNKKKFIAR KSYHGSTL++ASLSGLPALHQKFDLPAPFVLHTDCPHYWR+ P E
Sbjct: 183 ALGRPNKKKFIARSKSYHGSTLVSASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPDE 242
Query: 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240
TEEE++TRLA NLE+LILKEGPETIAAFIAEPV+GAGGVIPPP TYFEK+QAV+KKYDIL
Sbjct: 243 TEEEFATRLATNLENLILKEGPETIAAFIAEPVMGAGGVIPPPKTYFEKIQAVLKKYDIL 302
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
IADEVI AFGRLGTMFGCD Y IKPDLVS AKALSSAYMPIGAILVSPE+++VI+SQSN
Sbjct: 303 LIADEVITAFGRLGTMFGCDMYDIKPDLVSIAKALSSAYMPIGAILVSPEITDVIYSQSN 362
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI 360
LGSF+HGFTYSGHPVSCAVAIEALKIYKERNI+E V KIAP+FQ+G+KAFS SPI+GEI
Sbjct: 363 KLGSFAHGFTYSGHPVSCAVAIEALKIYKERNIIEHVQKIAPRFQEGIKAFSGSPIVGEI 422
Query: 361 RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPE 420
RG GLILGTEF DNKSPN+PFP EWG+G+ FGA+CEK GML+RV+GDNIM+SPP IM+P+
Sbjct: 423 RGLGLILGTEFVDNKSPNDPFPAEWGVGSLFGAECEKRGMLIRVAGDNIMLSPPLIMTPD 482
Query: 421 EVDELISKYGKALKATEERVKELKSQQ 447
EV+E+I KYG ALKATEER+ ELK+++
Sbjct: 483 EVEEIICKYGDALKATEERIAELKAKR 509
|
Transaminase that degrades gamma-amino butyric acid (GABA). Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q84P53|GATP2_SOLLC Gamma aminobutyrate transaminase 2 OS=Solanum lycopersicum GN=GABA-TP2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/447 (78%), Positives = 397/447 (88%), Gaps = 1/447 (0%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
MLAPFTA W D+ PLVI+K+EGSYVY VNGKKYLDSL+GLWCT LGGSEPRL+ AA+
Sbjct: 12 MLAPFTAAWM-IDMGPLVIDKAEGSYVYGVNGKKYLDSLSGLWCTVLGGSEPRLIEAASK 70
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
QLN FYHSFWNRTTKPSLDLAKEL+ MFTA+KM KVFFT+SGSEANDTQVKLVWYYNN
Sbjct: 71 QLNKSAFYHSFWNRTTKPSLDLAKELINMFTANKMGKVFFTSSGSEANDTQVKLVWYYNN 130
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE 180
A+GRPNKKK I+R+ +YHGST + A LSGLP+LH KFDLP P++LHTDCPHYW Y PGE
Sbjct: 131 AIGRPNKKKIISRKNAYHGSTYMTAGLSGLPSLHLKFDLPPPYILHTDCPHYWNYHLPGE 190
Query: 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240
TEEEYSTRLANNLE+LILKEGPET+AAFIAEPV+G GVI PPATYFEK+QAV+KKYDIL
Sbjct: 191 TEEEYSTRLANNLENLILKEGPETVAAFIAEPVMGGAGVIIPPATYFEKIQAVLKKYDIL 250
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
FIADEVIC FGRLGTMFGCDKY+IKPDLVS AKALS Y+PIGA+LVS E+S+VI SQSN
Sbjct: 251 FIADEVICGFGRLGTMFGCDKYNIKPDLVSIAKALSGGYIPIGAVLVSEEISKVIMSQSN 310
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI 360
LG F HGFTYSGHPV+CAVA+EALKIYKE+NI E VNK++PK Q+G+KAF DSPIIGEI
Sbjct: 311 QLGVFCHGFTYSGHPVACAVALEALKIYKEKNITEVVNKLSPKLQEGLKAFIDSPIIGEI 370
Query: 361 RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPE 420
RGTGL+L TEF DNKSPN+PFPPEWG+G YFG+QC+KHGMLV SGD++ M+PPF +S E
Sbjct: 371 RGTGLVLSTEFVDNKSPNDPFPPEWGVGTYFGSQCQKHGMLVSFSGDHVNMAPPFTLSLE 430
Query: 421 EVDELISKYGKALKATEERVKELKSQQ 447
E+DE+IS YGKALK TE+RV+ELKSQ+
Sbjct: 431 ELDEMISIYGKALKDTEKRVEELKSQK 457
|
Transaminase that degrades gamma-amino butyric acid (GABA) and uses pyruvate or glyoxylate as amino-group acceptor. Cannot use beta-alanine, ornithine, acetylornithine, serine, glycine, asparagine, glutamine, glutamate, valine, leucine, isoleucine, methionine, phenylalanine, histidine, lysine, arginine, aspartate, threonine, tyrosine, tryptophan, proline, or cysteine as amino donors. May be responsible for establishing the GABA gradient in the carpel. Solanum lycopersicum (taxid: 4081) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q7XN12|GATP2_ORYSJ Probable gamma-aminobutyrate transaminase 2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os04g0614500 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/447 (77%), Positives = 395/447 (88%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
MLAPFTAGW STD+ PL+IE+SEGSYVYD G KYLD+LAGLWCTALGGSEPRLV AAT
Sbjct: 50 MLAPFTAGWHSTDLEPLIIERSEGSYVYDSKGNKYLDTLAGLWCTALGGSEPRLVKAATD 109
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
QLN LPFYHSFWN T KP LDLA+EL+ MFTA +M KVFFTNSGSEAND+QVKLVWYYNN
Sbjct: 110 QLNKLPFYHSFWNSTAKPPLDLAEELISMFTAKEMGKVFFTNSGSEANDSQVKLVWYYNN 169
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE 180
ALGRPNKKK IA+ ++YHGSTLI+ASLSGLPA+H KFDLPAPFVLHTDCPHYWR+ PGE
Sbjct: 170 ALGRPNKKKIIAQSQAYHGSTLISASLSGLPAMHLKFDLPAPFVLHTDCPHYWRFGLPGE 229
Query: 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240
EEE++TRLA+NLE+LILKEGPET+AAFIAEPVIGAGGVIPPP TYFEK+QAV++KYD+L
Sbjct: 230 AEEEFATRLADNLENLILKEGPETVAAFIAEPVIGAGGVIPPPKTYFEKIQAVLQKYDVL 289
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
FIADEVI FGRLGTMFG D Y+IKPDLVS AKALSSAY+PIGA LVSPE+S+V+HSQSN
Sbjct: 290 FIADEVITGFGRLGTMFGSDLYNIKPDLVSLAKALSSAYVPIGATLVSPEISDVVHSQSN 349
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI 360
+G F+HGFTYSGHPVSCAVA+EALKIY+ERNI V +I+P+FQ+G+KAF+ S IIGE
Sbjct: 350 KIGFFAHGFTYSGHPVSCAVALEALKIYRERNIPAHVKQISPRFQEGIKAFAGSSIIGET 409
Query: 361 RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPE 420
RG GL+L TEFA+NKSPN+PFP EWG+ FGA+C+K GMLV+V GD I MSPP IMS
Sbjct: 410 RGVGLLLATEFANNKSPNDPFPVEWGVAQIFGAECKKRGMLVKVVGDEIAMSPPLIMSQR 469
Query: 421 EVDELISKYGKALKATEERVKELKSQQ 447
EVD L+S YG+ALKATEERV EL+S++
Sbjct: 470 EVDGLVSIYGEALKATEERVAELRSKK 496
|
Transaminase that degrades gamma-amino butyric acid (GABA). Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q01K12|GATP2_ORYSI Probable gamma-aminobutyrate transaminase 2, mitochondrial OS=Oryza sativa subsp. indica GN=OsI_17384 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/447 (77%), Positives = 395/447 (88%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
MLAPFTAGW STD+ PL+IE+SEGSYVYD G KYLD+LAGLWCTALGGSEPRLV AAT
Sbjct: 50 MLAPFTAGWHSTDLEPLIIERSEGSYVYDSKGNKYLDTLAGLWCTALGGSEPRLVKAATD 109
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
QLN LPFYHSFWN T KP LDLA+EL+ MFTA +M KVFFTNSGSEAND+QVKLVWYYNN
Sbjct: 110 QLNKLPFYHSFWNSTAKPPLDLAEELISMFTAKEMGKVFFTNSGSEANDSQVKLVWYYNN 169
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE 180
ALGRPNKKK IA+ ++YHGSTLI+ASLSGLPA+H KFDLPAPFVLHTDCPHYWR+ PGE
Sbjct: 170 ALGRPNKKKIIAQSQAYHGSTLISASLSGLPAMHLKFDLPAPFVLHTDCPHYWRFGLPGE 229
Query: 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240
EEE++TRLA+NLE+LILKEGPET+AAFIAEPVIGAGGVIPPP TYFEK+QAV++KYD+L
Sbjct: 230 AEEEFATRLADNLENLILKEGPETVAAFIAEPVIGAGGVIPPPKTYFEKIQAVLQKYDVL 289
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
FIADEVI FGRLGTMFG D Y+IKPDLVS AKALSSAY+PIGA LVSPE+S+V+HSQSN
Sbjct: 290 FIADEVITGFGRLGTMFGSDLYNIKPDLVSLAKALSSAYVPIGATLVSPEISDVVHSQSN 349
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI 360
+G F+HGFTYSGHPVSCAVA+EALKIY+ERNI V +I+P+FQ+G+KAF+ S IIGE
Sbjct: 350 KIGFFAHGFTYSGHPVSCAVALEALKIYRERNIPAHVKQISPRFQEGIKAFAGSSIIGET 409
Query: 361 RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPE 420
RG GL+L TEFA+NKSPN+PFP EWG+ FGA+C+K GMLV+V GD I MSPP IMS
Sbjct: 410 RGVGLLLATEFANNKSPNDPFPVEWGVAQIFGAECKKRGMLVKVVGDEIAMSPPLIMSQR 469
Query: 421 EVDELISKYGKALKATEERVKELKSQQ 447
EVD L+S YG+ALKATEERV EL+S++
Sbjct: 470 EVDGLVSIYGEALKATEERVAELRSKK 496
|
Transaminase that degrades gamma-amino butyric acid (GABA). Oryza sativa subsp. indica (taxid: 39946) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 447 | ||||||
| 224086589 | 514 | predicted protein [Populus trichocarpa] | 1.0 | 0.869 | 0.910 | 0.0 | |
| 414883543 | 447 | TPA: putative aminotransferase class III | 1.0 | 1.0 | 0.906 | 0.0 | |
| 255560072 | 528 | aminobutyrate aminotransferase, putative | 1.0 | 0.846 | 0.901 | 0.0 | |
| 224137404 | 450 | predicted protein [Populus trichocarpa] | 1.0 | 0.993 | 0.903 | 0.0 | |
| 405780098 | 514 | gamma-aminobutyrate transaminase 1 [Malu | 1.0 | 0.869 | 0.906 | 0.0 | |
| 356538512 | 513 | PREDICTED: uncharacterized aminotransfer | 1.0 | 0.871 | 0.890 | 0.0 | |
| 405780100 | 514 | gamma-aminobutyrate transaminase 2 [Malu | 1.0 | 0.869 | 0.897 | 0.0 | |
| 449460004 | 507 | PREDICTED: gamma aminobutyrate transamin | 1.0 | 0.881 | 0.868 | 0.0 | |
| 356544361 | 517 | PREDICTED: uncharacterized aminotransfer | 1.0 | 0.864 | 0.883 | 0.0 | |
| 225464809 | 516 | PREDICTED: uncharacterized aminotransfer | 1.0 | 0.866 | 0.879 | 0.0 |
| >gi|224086589|ref|XP_002307913.1| predicted protein [Populus trichocarpa] gi|222853889|gb|EEE91436.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 865 bits (2235), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/447 (91%), Positives = 434/447 (97%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
MLAPFTAGWQS+D++PLVIEKSEGSYVYD+NGKKYLD+LAGLWCTALGG+EPRLVAAAT
Sbjct: 65 MLAPFTAGWQSSDLNPLVIEKSEGSYVYDINGKKYLDALAGLWCTALGGNEPRLVAAATE 124
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
QLN LPFYHSFWNRTTKPSLDLAKELLE FTASKMAK FFTNSGSEANDTQVKLVWYYNN
Sbjct: 125 QLNKLPFYHSFWNRTTKPSLDLAKELLETFTASKMAKAFFTNSGSEANDTQVKLVWYYNN 184
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE 180
ALGRPNKKKFIAR KSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRY PGE
Sbjct: 185 ALGRPNKKKFIARAKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYHLPGE 244
Query: 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240
TEEE+STRLANNLE+LILKEGPETIAAFIAEPV+GAGGVIPPPATYF+K+QAVVKKY+IL
Sbjct: 245 TEEEFSTRLANNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFDKIQAVVKKYEIL 304
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
FIADEVICAFGRLGTM+GCDKY+IKPDLVS AKALSSAYMPIGA++VSPEVS+VIHSQS+
Sbjct: 305 FIADEVICAFGRLGTMYGCDKYNIKPDLVSVAKALSSAYMPIGAVMVSPEVSDVIHSQSS 364
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI 360
LGSFSHGFTYSGHPV+CAVAIEALKIYKERNI++QVN+IAPKFQDGVKAF+DSPIIGEI
Sbjct: 365 KLGSFSHGFTYSGHPVACAVAIEALKIYKERNILDQVNRIAPKFQDGVKAFADSPIIGEI 424
Query: 361 RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPE 420
RGTGLILGTEF DNKSPN+PFPPEWG+GAYFGAQCEK GMLVRV+GDNIMMSPPFIMSPE
Sbjct: 425 RGTGLILGTEFVDNKSPNDPFPPEWGVGAYFGAQCEKDGMLVRVAGDNIMMSPPFIMSPE 484
Query: 421 EVDELISKYGKALKATEERVKELKSQQ 447
EVD LISKYGKAL+ATEERVKELKSQ
Sbjct: 485 EVDVLISKYGKALRATEERVKELKSQH 511
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|414883543|tpg|DAA59557.1| TPA: putative aminotransferase class III superfamily protein, partial [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 860 bits (2223), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/447 (90%), Positives = 432/447 (96%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
MLAPFTAGWQ+TD+HPLVIEKSEGSYVYD NGKKYLDSLAGLWCTALGG+EPRLV AATA
Sbjct: 1 MLAPFTAGWQTTDLHPLVIEKSEGSYVYDANGKKYLDSLAGLWCTALGGNEPRLVEAATA 60
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
QLN LPFYHSFWNRTTKPSLDLAK+LLE FTA+KMAKVFFTNSGSEANDTQVKLVWYYNN
Sbjct: 61 QLNKLPFYHSFWNRTTKPSLDLAKDLLETFTATKMAKVFFTNSGSEANDTQVKLVWYYNN 120
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE 180
ALGRPNKKKFIAR KSYHGSTLI+ASLSGLPALHQKFDLPAPFVLHTDCPHYWRY GE
Sbjct: 121 ALGRPNKKKFIARAKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRYHLEGE 180
Query: 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240
TEEE+STRLANNLE+LILKEGPETIAAFIAEPV+GAGGVIPPPATYFEK+QAVVKKYDIL
Sbjct: 181 TEEEFSTRLANNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVVKKYDIL 240
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
FIADEVICAFGRLGTMFGCDKY+IKPDLVS AKALSSAYMPIGA++VSPEVSEVI+SQSN
Sbjct: 241 FIADEVICAFGRLGTMFGCDKYNIKPDLVSLAKALSSAYMPIGAVMVSPEVSEVIYSQSN 300
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI 360
LGSFSHGFTYSGHPVSCAVAIEALK+YKERNIVE+V I+P+FQDG+K+FSDSPI+GEI
Sbjct: 301 KLGSFSHGFTYSGHPVSCAVAIEALKLYKERNIVEKVKTISPRFQDGLKSFSDSPIVGEI 360
Query: 361 RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPE 420
RGTGLILGTEF DNKSPN PFPPEWG+G YFGAQCEKHG+LVRV+GDNIMMSPPFI++P+
Sbjct: 361 RGTGLILGTEFTDNKSPNNPFPPEWGVGTYFGAQCEKHGLLVRVAGDNIMMSPPFIITPQ 420
Query: 421 EVDELISKYGKALKATEERVKELKSQQ 447
EVDELISKYGKALKATEERVKELKSQQ
Sbjct: 421 EVDELISKYGKALKATEERVKELKSQQ 447
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255560072|ref|XP_002521054.1| aminobutyrate aminotransferase, putative [Ricinus communis] gi|223539757|gb|EEF41338.1| aminobutyrate aminotransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 853 bits (2205), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/447 (90%), Positives = 428/447 (95%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
MLAPFTAGWQSTD+ PLVIEKSEGSYVYD+NG KYLDSLAGLWCTALGG+EPRLVAAAT
Sbjct: 79 MLAPFTAGWQSTDLDPLVIEKSEGSYVYDINGNKYLDSLAGLWCTALGGNEPRLVAAATE 138
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
QLN LPFYHSFWNRTTKPSLDLAKELLE FTA KMAK FFTNSGSEANDTQVKLVWYYNN
Sbjct: 139 QLNKLPFYHSFWNRTTKPSLDLAKELLETFTARKMAKAFFTNSGSEANDTQVKLVWYYNN 198
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE 180
ALGRPNKKKFIAR KSYHGSTLI+ASLSGLPALHQKFDLPAPFVLHTDCPHYWRY PGE
Sbjct: 199 ALGRPNKKKFIARAKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRYHLPGE 258
Query: 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240
TEEE+STRL+NNLE+LI KEGPETIAAFIAEPV+GAGGVIPPPATYFEKVQAVV+KYDIL
Sbjct: 259 TEEEFSTRLSNNLENLIQKEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVQKYDIL 318
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
FIADEVICAFGRLGTMFGCDKY+IKPDLVS AKALSSAYMPIGA++VSPEVS+VIHSQSN
Sbjct: 319 FIADEVICAFGRLGTMFGCDKYNIKPDLVSVAKALSSAYMPIGAVMVSPEVSDVIHSQSN 378
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI 360
LG FSHGFTYSGHPVSCAVAIEALKIYKERNI E+VN++AP+FQDG+KAFSDSP+IGEI
Sbjct: 379 KLGIFSHGFTYSGHPVSCAVAIEALKIYKERNIAERVNEVAPRFQDGLKAFSDSPVIGEI 438
Query: 361 RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPE 420
RGTGLILGTEFADNKSPN+PFP EWGIGAYFGAQC+KHGMLVRV+GDNIMMSPP I++PE
Sbjct: 439 RGTGLILGTEFADNKSPNDPFPAEWGIGAYFGAQCQKHGMLVRVAGDNIMMSPPLIITPE 498
Query: 421 EVDELISKYGKALKATEERVKELKSQQ 447
EVD+LIS YGKALKATEERV ELKSQQ
Sbjct: 499 EVDKLISIYGKALKATEERVNELKSQQ 525
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224137404|ref|XP_002322549.1| predicted protein [Populus trichocarpa] gi|222867179|gb|EEF04310.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 853 bits (2203), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/447 (90%), Positives = 428/447 (95%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
MLAPFTAGWQS D+ PLVIEKSEGSYVYD+NGKKYLD+LAGLWCT+LGG+EPRLVAAAT
Sbjct: 1 MLAPFTAGWQSNDLDPLVIEKSEGSYVYDINGKKYLDALAGLWCTSLGGNEPRLVAAATE 60
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
QLN LPFYHSFWNRTTKPSLDLAKELLE FTASKMAK FFTNSGSEANDTQVKLVWYYNN
Sbjct: 61 QLNKLPFYHSFWNRTTKPSLDLAKELLETFTASKMAKAFFTNSGSEANDTQVKLVWYYNN 120
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE 180
ALGRPNKKKFIAR KSYHGSTLI ASLSGLPALHQKFDLPAPFV HTDCPHYWRY PGE
Sbjct: 121 ALGRPNKKKFIARAKSYHGSTLITASLSGLPALHQKFDLPAPFVRHTDCPHYWRYHLPGE 180
Query: 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240
TEEE+STRLA NLE+LILKEGPETIAAFIAEPV+GAGGVIPPPATYF+K+QAVVKKYDIL
Sbjct: 181 TEEEFSTRLAINLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFDKIQAVVKKYDIL 240
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
FIADEVICAFGRLGTM+GCDK++IKPDLVS AKALSS Y+PIGA++VSPEVS+VI SQS+
Sbjct: 241 FIADEVICAFGRLGTMYGCDKFNIKPDLVSVAKALSSGYLPIGAVMVSPEVSDVIDSQSS 300
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI 360
LGSFSHGFTYSGHPV+CAVAIE LKIYKERNI++QVN+IAPKFQDGVKAFSDSPIIGEI
Sbjct: 301 KLGSFSHGFTYSGHPVACAVAIETLKIYKERNILDQVNRIAPKFQDGVKAFSDSPIIGEI 360
Query: 361 RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPE 420
RGTGLILGTEF DNKSPN+PFPPEWG+GAYFGAQCEK GMLVRVSGDNIMMSPPFIMSPE
Sbjct: 361 RGTGLILGTEFVDNKSPNDPFPPEWGVGAYFGAQCEKEGMLVRVSGDNIMMSPPFIMSPE 420
Query: 421 EVDELISKYGKALKATEERVKELKSQQ 447
EVDELISKYGKALKATEERVKELKSQQ
Sbjct: 421 EVDELISKYGKALKATEERVKELKSQQ 447
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|405780098|gb|AFS28620.1| gamma-aminobutyrate transaminase 1 [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 852 bits (2201), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/447 (90%), Positives = 428/447 (95%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
MLAPFTAGWQSTD+HPL+IEKSEG YVYD NGKKYLD+LAGLWCTALGG+EPRLVAAAT
Sbjct: 67 MLAPFTAGWQSTDLHPLIIEKSEGCYVYDSNGKKYLDALAGLWCTALGGNEPRLVAAATK 126
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
QLNTLPFYHSFWNRTTKPSLDLAKELLE FTASKMAK FFTNSGSEANDTQVKLVWYYNN
Sbjct: 127 QLNTLPFYHSFWNRTTKPSLDLAKELLETFTASKMAKAFFTNSGSEANDTQVKLVWYYNN 186
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE 180
ALGRP+KKKFIAR KSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWR+ PGE
Sbjct: 187 ALGRPDKKKFIARHKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRHHLPGE 246
Query: 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240
TEEEYSTRLANNLE+LILKEGPETIAAFIAEPV+GAGGVIPPPATYFEKVQAVVKKYDIL
Sbjct: 247 TEEEYSTRLANNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDIL 306
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
FIADEVICAFGRLG M+GCDKY+IKPDLVS AKALSSAYMPIGA+LVSPEVS+VIHSQS+
Sbjct: 307 FIADEVICAFGRLGYMYGCDKYNIKPDLVSVAKALSSAYMPIGAVLVSPEVSDVIHSQSS 366
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI 360
LGSFSHGFTYSGHPV+CAVAIEALKIYKERNIVEQV IAP+FQ+GVKAFSDSPIIGEI
Sbjct: 367 ELGSFSHGFTYSGHPVACAVAIEALKIYKERNIVEQVRSIAPRFQEGVKAFSDSPIIGEI 426
Query: 361 RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPE 420
RGTGLI+GTEFADNKSPN+PFP EWG+ AYFGAQCEKHGMLVRV+GDN MMSPPFIM+P
Sbjct: 427 RGTGLIIGTEFADNKSPNDPFPAEWGVCAYFGAQCEKHGMLVRVAGDNTMMSPPFIMTPS 486
Query: 421 EVDELISKYGKALKATEERVKELKSQQ 447
EV+ELIS YGKALKATEE VKELKS+Q
Sbjct: 487 EVEELISIYGKALKATEEYVKELKSKQ 513
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356538512|ref|XP_003537747.1| PREDICTED: uncharacterized aminotransferase y4uB-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 848 bits (2191), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/447 (89%), Positives = 425/447 (95%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
MLAPFTAGWQS+D+HPL+IEKSEGSYVYD+NGKKYLD+LAGLW T+LGGSEPRLV AA A
Sbjct: 66 MLAPFTAGWQSSDLHPLIIEKSEGSYVYDINGKKYLDALAGLWATSLGGSEPRLVDAAVA 125
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
QL LPFYHSFWNRTT PSLDLAKELLEMFTA KM K FF NSGSEANDTQVKLVWYYNN
Sbjct: 126 QLKKLPFYHSFWNRTTLPSLDLAKELLEMFTARKMGKAFFVNSGSEANDTQVKLVWYYNN 185
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE 180
ALGRP+KKKFIAR KSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRY PGE
Sbjct: 186 ALGRPDKKKFIARAKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYHLPGE 245
Query: 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240
TEEE+STRLANNLE LILKEGPETIAAFIAEPV+GAGGVIPPP+TYFEKVQAVVKKYDIL
Sbjct: 246 TEEEFSTRLANNLEQLILKEGPETIAAFIAEPVMGAGGVIPPPSTYFEKVQAVVKKYDIL 305
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
FIADEVICAFGRLGTMFGCDKY+IKPDLVS AKALSSAY+PIGA+LVSPE+SEVIH QSN
Sbjct: 306 FIADEVICAFGRLGTMFGCDKYNIKPDLVSLAKALSSAYLPIGAVLVSPEISEVIHDQSN 365
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI 360
LGSFSHGFTYSGHP +CAVAIEALKIYKERNIV+QVNKIAP+FQDG+KAFSDSPIIGEI
Sbjct: 366 KLGSFSHGFTYSGHPAACAVAIEALKIYKERNIVDQVNKIAPRFQDGIKAFSDSPIIGEI 425
Query: 361 RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPE 420
RGTGLILGTEF DNKSPN+PFPPEWGIGAYFGAQCEKHGMLVRV+GDNIMMSPP+I+SP
Sbjct: 426 RGTGLILGTEFTDNKSPNDPFPPEWGIGAYFGAQCEKHGMLVRVAGDNIMMSPPYIISPG 485
Query: 421 EVDELISKYGKALKATEERVKELKSQQ 447
EV+ELIS YGKALK TE++V+ELKSQ+
Sbjct: 486 EVEELISIYGKALKETEKKVQELKSQR 512
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|405780100|gb|AFS28621.1| gamma-aminobutyrate transaminase 2 [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 848 bits (2191), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/447 (89%), Positives = 425/447 (95%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
MLAPFT GWQSTD+HPL+IEKSEGSY YD NGKKYLD+LAGLWCTALGG+EPRLVAAAT
Sbjct: 67 MLAPFTPGWQSTDLHPLIIEKSEGSYAYDSNGKKYLDALAGLWCTALGGNEPRLVAAATK 126
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
QLNTLPFYHSFWNRTT+PSLDLAKELLE FTA+KMAK FFTNSGSEANDTQVKLVWYYNN
Sbjct: 127 QLNTLPFYHSFWNRTTRPSLDLAKELLETFTATKMAKAFFTNSGSEANDTQVKLVWYYNN 186
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE 180
ALGRP+KKKFIAR KSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWR+ PGE
Sbjct: 187 ALGRPDKKKFIARHKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRHHLPGE 246
Query: 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240
TEEE+STRLANNLE+LILKEGPETIAAFIAEPV+GAGGVI PPATYFEKVQAVVKKYDIL
Sbjct: 247 TEEEFSTRLANNLENLILKEGPETIAAFIAEPVMGAGGVITPPATYFEKVQAVVKKYDIL 306
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
FIADEVICAFGRLG M+GCDKY+IKPDLVS AKALSSAYMPIGA+LVSPEVS+VIHSQS+
Sbjct: 307 FIADEVICAFGRLGYMYGCDKYNIKPDLVSVAKALSSAYMPIGAVLVSPEVSDVIHSQSS 366
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI 360
LGSFSHGFTYSGHPV+CAVAIE LKIYKERNIVEQV IAP+FQDGVKAFSDSPIIGEI
Sbjct: 367 KLGSFSHGFTYSGHPVACAVAIETLKIYKERNIVEQVRSIAPRFQDGVKAFSDSPIIGEI 426
Query: 361 RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPE 420
RGTGLILGTEF DNKSPN+PFP EWG+GAYFGAQCEKHGML+RV+GDNIMMSPPFIM+P
Sbjct: 427 RGTGLILGTEFTDNKSPNDPFPAEWGVGAYFGAQCEKHGMLIRVAGDNIMMSPPFIMTPS 486
Query: 421 EVDELISKYGKALKATEERVKELKSQQ 447
EVDELIS YGKALK TEE VKELKS+Q
Sbjct: 487 EVDELISLYGKALKDTEEYVKELKSKQ 513
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449460004|ref|XP_004147736.1| PREDICTED: gamma aminobutyrate transaminase 1, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 841 bits (2172), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/447 (86%), Positives = 428/447 (95%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
MLAPFTAGWQ+TDV+PL+IE+SEGSYVYD++G+KYLDSLAGLWCT+LGG+E RLVAAA
Sbjct: 61 MLAPFTAGWQTTDVNPLIIERSEGSYVYDIDGRKYLDSLAGLWCTSLGGNESRLVAAAMK 120
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
QLNTLPFYHSFWNRTT+PSLDLAK+LLEMFTA KM KVFF NSGSEANDTQVKLVWYYNN
Sbjct: 121 QLNTLPFYHSFWNRTTRPSLDLAKDLLEMFTARKMGKVFFVNSGSEANDTQVKLVWYYNN 180
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE 180
ALGRP+KKKFIAR KSYHGSTLI+ASL+GLPALHQKFD+PAPFVLHTDCPHYWR+ PGE
Sbjct: 181 ALGRPDKKKFIARSKSYHGSTLISASLTGLPALHQKFDIPAPFVLHTDCPHYWRFHLPGE 240
Query: 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240
TEEE+STRLA NLEDLI+KEGPETIAAFIAEPV+GAGGVIPPPATYFEK+QAVVKKYDIL
Sbjct: 241 TEEEFSTRLAKNLEDLIIKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVVKKYDIL 300
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
FIADEVICAFGRLGTMFGCDKY+IKPDLVS AKALSS YMPIGA++VSPE+S+VIHSQSN
Sbjct: 301 FIADEVICAFGRLGTMFGCDKYNIKPDLVSLAKALSSGYMPIGAVIVSPEISDVIHSQSN 360
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI 360
LGSFSHGFTYSGHPV+CAVAIE LKIYKERNIVE+VN I+ +FQDG+KAFSDSPI+GEI
Sbjct: 361 KLGSFSHGFTYSGHPVACAVAIETLKIYKERNIVEKVNSISSRFQDGLKAFSDSPIVGEI 420
Query: 361 RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPE 420
RGTGLILGTEF DNKSPN+PFPPEWG+GAYFGA+C+K+GMLVRVSGD IMMSPPFI+SP+
Sbjct: 421 RGTGLILGTEFVDNKSPNDPFPPEWGVGAYFGAECQKNGMLVRVSGDTIMMSPPFIISPQ 480
Query: 421 EVDELISKYGKALKATEERVKELKSQQ 447
EVDELIS YGKALKATEERVKELK+Q+
Sbjct: 481 EVDELISIYGKALKATEERVKELKAQR 507
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544361|ref|XP_003540621.1| PREDICTED: uncharacterized aminotransferase y4uB-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 840 bits (2169), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/447 (88%), Positives = 423/447 (94%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
MLAPFTAGWQ+TD+HPLVIEKSEGSYVYD+NGKKYLD+LAGLW T+LGGSEPRLV AA A
Sbjct: 70 MLAPFTAGWQTTDLHPLVIEKSEGSYVYDINGKKYLDALAGLWATSLGGSEPRLVDAAIA 129
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
QL LPFYHSFWNRTT PSLDLAKELLEMFTA KM K FF NSGSEANDTQVKLVWYYNN
Sbjct: 130 QLKKLPFYHSFWNRTTLPSLDLAKELLEMFTARKMGKAFFVNSGSEANDTQVKLVWYYNN 189
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE 180
ALGRP+KKKFIAR KSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRY PGE
Sbjct: 190 ALGRPDKKKFIARAKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYHLPGE 249
Query: 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240
TEEE+STRLA NLE LILKEGPETIAAFIAEPV+GAGGVI PP+TYFEKVQAVVKKYDIL
Sbjct: 250 TEEEFSTRLAKNLEQLILKEGPETIAAFIAEPVMGAGGVIVPPSTYFEKVQAVVKKYDIL 309
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
FIADEVICAFGRLGTMFGCDKY+IKPDLVS AKALSSAY+PIGA+LVSPE+S+VIH+QSN
Sbjct: 310 FIADEVICAFGRLGTMFGCDKYNIKPDLVSLAKALSSAYLPIGAVLVSPEISDVIHAQSN 369
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI 360
LGSFSHGFTYSGHP +CAVAIEALKIYKERNIV+QVNKIAP+FQDG+KAFSDSPIIGEI
Sbjct: 370 KLGSFSHGFTYSGHPAACAVAIEALKIYKERNIVDQVNKIAPRFQDGIKAFSDSPIIGEI 429
Query: 361 RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPE 420
RGTGLILGTEF DNKSPN+PFPPEWG+GAYFGAQCEKHGMLVRV+GDNIMMSPP+I+S
Sbjct: 430 RGTGLILGTEFTDNKSPNDPFPPEWGVGAYFGAQCEKHGMLVRVAGDNIMMSPPYIISQG 489
Query: 421 EVDELISKYGKALKATEERVKELKSQQ 447
EVDELIS YGKALK TE++V+ELKSQ+
Sbjct: 490 EVDELISIYGKALKETEKKVQELKSQR 516
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225464809|ref|XP_002268803.1| PREDICTED: uncharacterized aminotransferase y4uB-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 839 bits (2167), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/447 (87%), Positives = 426/447 (95%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
MLAPFTAGWQ++D +PLVIEKS+G+YV+D+NGKKYLDSLAGLWCTALGGSEPRLVAAA A
Sbjct: 69 MLAPFTAGWQASDTNPLVIEKSKGAYVWDINGKKYLDSLAGLWCTALGGSEPRLVAAAIA 128
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
QLNTLPFYHSFWNRTTKPSLDLAKELL FTA+KM K FFTNSGSEANDTQVKLVWYYNN
Sbjct: 129 QLNTLPFYHSFWNRTTKPSLDLAKELLNTFTATKMGKAFFTNSGSEANDTQVKLVWYYNN 188
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE 180
ALGRPNKKKFIAR+KSYHGSTLI+ASLSGLPALHQKFDLPAPFVLHTDCPHYWRY PGE
Sbjct: 189 ALGRPNKKKFIAREKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRYHLPGE 248
Query: 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240
+EEE+STRLANNLE+LILKEGPETIAAFIAEPV+GAGGVIPPPATYF+K+Q ++KKYDIL
Sbjct: 249 SEEEFSTRLANNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFDKIQPILKKYDIL 308
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
FIADEVICAFGRLGTMFGCDKY +KPDLVS AKALSSAYMPIGA+LVSPE+S+VI SQSN
Sbjct: 309 FIADEVICAFGRLGTMFGCDKYGMKPDLVSMAKALSSAYMPIGAVLVSPEISDVIDSQSN 368
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI 360
LG FSHGFTYSGHPVSCAVA+EALKIYKERNI E V +I+PKFQ+G+KAFSDSPIIGEI
Sbjct: 369 KLGVFSHGFTYSGHPVSCAVALEALKIYKERNIAEVVQRISPKFQNGLKAFSDSPIIGEI 428
Query: 361 RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPE 420
RGTGLILGTEF DNKSPN+ FPPEWGIGAYFGAQC+KHGMLVRV+GD+IMMSPPFI++PE
Sbjct: 429 RGTGLILGTEFTDNKSPNDVFPPEWGIGAYFGAQCQKHGMLVRVAGDSIMMSPPFIITPE 488
Query: 421 EVDELISKYGKALKATEERVKELKSQQ 447
EVDELIS YGKALKATEERVKELKS Q
Sbjct: 489 EVDELISIYGKALKATEERVKELKSLQ 515
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 447 | ||||||
| TIGR_CMR|CPS_2025 | 450 | CPS_2025 "aminotransferase, cl | 0.935 | 0.928 | 0.464 | 8.2e-99 | |
| TIGR_CMR|SPO_1166 | 450 | SPO_1166 "aminotransferase, cl | 0.959 | 0.953 | 0.418 | 3.1e-90 | |
| UNIPROTKB|Q47V65 | 451 | CPS_4663 "Aminotransferase, cl | 0.955 | 0.946 | 0.4 | 1.8e-87 | |
| TIGR_CMR|CPS_4663 | 451 | CPS_4663 "aminotransferase, cl | 0.955 | 0.946 | 0.4 | 1.8e-87 | |
| UNIPROTKB|Q4K448 | 454 | PFL_5927 "Aminotransferase" [P | 0.955 | 0.940 | 0.400 | 2.9e-87 | |
| UNIPROTKB|Q48CA6 | 455 | PSPPH_4896 "Aminotransferase, | 0.955 | 0.938 | 0.402 | 1.1e-85 | |
| TIGR_CMR|SPO_1136 | 457 | SPO_1136 "aminotransferase, cl | 0.930 | 0.910 | 0.391 | 6.6e-81 | |
| UNIPROTKB|Q483I5 | 467 | CPS_2054 "Aminotransferase, cl | 0.975 | 0.933 | 0.370 | 1.6e-77 | |
| TIGR_CMR|CPS_2054 | 467 | CPS_2054 "aminotransferase, cl | 0.975 | 0.933 | 0.370 | 1.6e-77 | |
| TIGR_CMR|SPO_3471 | 464 | SPO_3471 "aminotransferase, cl | 0.966 | 0.931 | 0.362 | 8.1e-76 |
| TIGR_CMR|CPS_2025 CPS_2025 "aminotransferase, class III" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 981 (350.4 bits), Expect = 8.2e-99, P = 8.2e-99
Identities = 197/424 (46%), Positives = 275/424 (64%)
Query: 17 LVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTT 76
L+IE+ +G+YVYD NGK+YL++LAGLWCT+LG + L+ A+ Q++ L F H F +T
Sbjct: 17 LIIERGDGAYVYDSNGKQYLEALAGLWCTSLGYNNHELIETASEQMSKLSFSHMFGGKTH 76
Query: 77 KPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKS 136
+ +DLA++L M AK+FF NSGS+ANDT +K++ YY NA+G+P K K IAR++S
Sbjct: 77 QVGIDLAEKLSAMVPVEN-AKIFFGNSGSDANDTHIKMLRYYFNAIGKPQKYKIIARERS 135
Query: 137 YHGSTLIAASLSGLPALHQKFDLP--APFVLHTDCPHYWRYAHPGETEEEYSTRLANNLE 194
YHG T+ +ASL+GL H F+LP A VL TD PHY+R A P E+E ++ R+ NNLE
Sbjct: 136 YHGVTVASASLTGLKPNHTHFNLPFDALGVLRTDAPHYYRNALPNESEAQFIDRIVNNLE 195
Query: 195 DLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLG 254
LIL EG +TIAAFI E Y++KVQAV++KYDIL ADEVI AFGR G
Sbjct: 196 QLILLEGADTIAAFIVEPITGASGVIVPPEGYYQKVQAVLQKYDILLWADEVITAFGRTG 255
Query: 255 TMFGCDKYSI-KPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSG 313
FGC I KP +++ AK LSSAYMPI A ++ ++ + + QS +G F HG+TYSG
Sbjct: 256 NDFGCKTVGIEKPAMMTLAKQLSSAYMPISASVIRGDMYDAMVEQSAQVGVFGHGYTYSG 315
Query: 314 HPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFAD 373
HPVSCAVA++ L+IY+ NI + KI Q + F P++GE+RG G+I E
Sbjct: 316 HPVSCAVALKTLEIYQRENIFDHAAKIGAYMQKRLHEFIHHPLVGEVRGKGMIGAIELVA 375
Query: 374 NKSPNEPFPPEWGIGAYFGAQCEKHGMLVR-VSGDNIMMSPPFIMSPEEVDELISKYGKA 432
NK + FP + +G + C+ +GM+ R V+G ++ PP I++ ++DE+I K K+
Sbjct: 376 NKKTGQAFP-DGTVGNFAMQACQNNGMICRAVAGSSLAFCPPLIVNKSQIDEMIEKTAKS 434
Query: 433 LKAT 436
L T
Sbjct: 435 LDQT 438
|
|
| TIGR_CMR|SPO_1166 SPO_1166 "aminotransferase, class III family" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
Identities = 182/435 (41%), Positives = 266/435 (61%)
Query: 12 TDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSF 71
T LV+++ +G YVYD +G +Y++ LAGLWCT+LG ++ A T QLN LPF H+F
Sbjct: 12 TATEQLVLDRGKGIYVYDTDGNEYIEGLAGLWCTSLGYDNAEVIGAITDQLNRLPFTHTF 71
Query: 72 WNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFI 131
+T +P + LA++L M A FF NSGS+ANDT K++ YY NA+G+P K+K I
Sbjct: 72 GGKTHEPIMKLAEKLKAMVPVED-AYFFFGNSGSDANDTHYKMLRYYFNAIGKPEKRKII 130
Query: 132 ARQKSYHGSTLIAASLSGLPALHQKFDLP--APFVLHTDCPHYWRYAHPGETEEEYSTRL 189
R++ YHG T+ A SL+ LPA FD P A +L +D PHY+ ETE ++ R+
Sbjct: 131 TRERGYHGVTVAAGSLTSLPANLAHFDAPVEALHILRSDAPHYYTGRQGNETEAQFVDRI 190
Query: 190 ANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICA 249
+NLE IL EG +TIAA I E Y+EK+Q +++K+DIL ADEVIC
Sbjct: 191 LDNLEQQILAEGADTIAAMIVEPITGASGVIVPPEGYYEKLQTLLRKHDILVWADEVICG 250
Query: 250 FGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGF 309
FGR G FGC IKPDL++FAK LSSAY PI A ++ + E + + S +G F HG+
Sbjct: 251 FGRTGADFGCTTMGIKPDLMTFAKQLSSAYFPISASVIPGWMYEKMIAPSAAVGVFGHGY 310
Query: 310 TYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA-FSDSPIIGEIRGTGLILG 368
TYSGHPV+CA A++ L+IY+ ++ ++ Q+ ++A F+D P++GE+RG GLI
Sbjct: 311 TYSGHPVACAAALKTLEIYERDDLFGHAAEVGAHMQEQLRAIFTDHPLVGEVRGKGLIAA 370
Query: 369 TEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR-VSGDNIMMSPPFIMSPEEVDELIS 427
E NK+ G GA +++G+L+R V+G++ + PP I++ EEVDE++
Sbjct: 371 LELVSNKTTGATIEKGAG-GATVQRLAQENGLLIRAVAGNSAALCPPLIITKEEVDEMLR 429
Query: 428 KYGKALKATEERVKE 442
+ A+ +K+
Sbjct: 430 RLKTAVDGAYAELKD 444
|
|
| UNIPROTKB|Q47V65 CPS_4663 "Aminotransferase, class III" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
Identities = 174/435 (40%), Positives = 271/435 (62%)
Query: 4 PFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLN 63
PF+ + + +I K+EG Y+Y+ NGKKYLD +AGLWC +G LV AA+ Q+
Sbjct: 16 PFSDNKELAEKGIKLISKAEGVYIYEDNGKKYLDGMAGLWCVNIGYGRKELVEAASQQMT 75
Query: 64 TLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALG 123
LP+Y+ F+ TT P+ +LA ++ + A M KVFFT SGS+ANDT ++V Y + G
Sbjct: 76 ELPYYNLFFKTTTAPATNLAAKIASLAPAH-MNKVFFTGSGSDANDTNFRMVRRYWDLKG 134
Query: 124 RPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE-TE 182
+P KK FI+R+ +YHGST+ AASL G+ +H++ DLP ++H D P YW +A G+ ++
Sbjct: 135 KPTKKTFISRKNAYHGSTVAAASLGGMGYMHEQGDLPIDGIVHVDQP-YW-FAEGGDLSQ 192
Query: 183 EEYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFI 242
+E+ + A +LE IL+ G E +AAFIAE +Y+ +++ ++ KYDILFI
Sbjct: 193 DEFGLKAAQSLEAKILEVGEENVAAFIAEPFQGAGGVITPPDSYWPEIKRILAKYDILFI 252
Query: 243 ADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTL 302
DEVI FGR G F + + +KPD+++ AK +SS Y+PIG +++S +V++V+ +
Sbjct: 253 LDEVISGFGRTGEWFASEYFDLKPDMITIAKGMSSGYLPIGGVIISDKVADVVIGEG--- 309
Query: 303 GSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQV-NKIAPKFQDGVKAFSDSPIIGEIR 361
F+HG+TYSGHPV+ AVA++ ++I + IV+QV ++I+P Q + +D PI+GE R
Sbjct: 310 ADFNHGYTYSGHPVAAAVALKNIEILESEGIVDQVKSEISPYLQQRWQELADHPIVGEAR 369
Query: 362 GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEE 421
G G++ E +K+ E P G +G+++R GD +++SPP +++ E
Sbjct: 370 GLGMVAAIELVKDKATKERLAPNAAGGGVCRDYSMDNGLIMRSCGDIMVISPPLVITKAE 429
Query: 422 VDELISKYGKALKAT 436
+DELI K K L T
Sbjct: 430 IDELIEKAKKTLDDT 444
|
|
| TIGR_CMR|CPS_4663 CPS_4663 "aminotransferase, class III" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
Identities = 174/435 (40%), Positives = 271/435 (62%)
Query: 4 PFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLN 63
PF+ + + +I K+EG Y+Y+ NGKKYLD +AGLWC +G LV AA+ Q+
Sbjct: 16 PFSDNKELAEKGIKLISKAEGVYIYEDNGKKYLDGMAGLWCVNIGYGRKELVEAASQQMT 75
Query: 64 TLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALG 123
LP+Y+ F+ TT P+ +LA ++ + A M KVFFT SGS+ANDT ++V Y + G
Sbjct: 76 ELPYYNLFFKTTTAPATNLAAKIASLAPAH-MNKVFFTGSGSDANDTNFRMVRRYWDLKG 134
Query: 124 RPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE-TE 182
+P KK FI+R+ +YHGST+ AASL G+ +H++ DLP ++H D P YW +A G+ ++
Sbjct: 135 KPTKKTFISRKNAYHGSTVAAASLGGMGYMHEQGDLPIDGIVHVDQP-YW-FAEGGDLSQ 192
Query: 183 EEYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFI 242
+E+ + A +LE IL+ G E +AAFIAE +Y+ +++ ++ KYDILFI
Sbjct: 193 DEFGLKAAQSLEAKILEVGEENVAAFIAEPFQGAGGVITPPDSYWPEIKRILAKYDILFI 252
Query: 243 ADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTL 302
DEVI FGR G F + + +KPD+++ AK +SS Y+PIG +++S +V++V+ +
Sbjct: 253 LDEVISGFGRTGEWFASEYFDLKPDMITIAKGMSSGYLPIGGVIISDKVADVVIGEG--- 309
Query: 303 GSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQV-NKIAPKFQDGVKAFSDSPIIGEIR 361
F+HG+TYSGHPV+ AVA++ ++I + IV+QV ++I+P Q + +D PI+GE R
Sbjct: 310 ADFNHGYTYSGHPVAAAVALKNIEILESEGIVDQVKSEISPYLQQRWQELADHPIVGEAR 369
Query: 362 GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEE 421
G G++ E +K+ E P G +G+++R GD +++SPP +++ E
Sbjct: 370 GLGMVAAIELVKDKATKERLAPNAAGGGVCRDYSMDNGLIMRSCGDIMVISPPLVITKAE 429
Query: 422 VDELISKYGKALKAT 436
+DELI K K L T
Sbjct: 430 IDELIEKAKKTLDDT 444
|
|
| UNIPROTKB|Q4K448 PFL_5927 "Aminotransferase" [Pseudomonas protegens Pf-5 (taxid:220664)] | Back alignment and assigned GO terms |
|---|
Score = 872 (312.0 bits), Expect = 2.9e-87, P = 2.9e-87
Identities = 175/437 (40%), Positives = 267/437 (61%)
Query: 2 LAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQ 61
LAPF+ Q + P +I ++G Y++D G + LD +AGLWC A+G L AA+ Q
Sbjct: 20 LAPFSDFKQLKEKGPRIITHAKGVYLWDSEGNQILDGMAGLWCVAIGYGRDELAEAASKQ 79
Query: 62 LNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNA 121
+ LP+Y+ F+ P L+L+K + ++ M VFFT SGSE NDT +++V +Y
Sbjct: 80 MRELPYYNLFFQTAHPPVLELSKAIADI-APEGMNHVFFTGSGSEGNDTMLRMVRHYWAI 138
Query: 122 LGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE- 180
G+PNKK I+R YHGST+ ASL G+ +H++ DLP P ++H P YW +A G+
Sbjct: 139 KGQPNKKTIISRVNGYHGSTVAGASLGGMTYMHEQGDLPIPGIVHIPQP-YW-FAEGGDM 196
Query: 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDIL 240
+ EE+ AN LE+ IL+ G + + AFIAE +Y+ +++ ++ KYDIL
Sbjct: 197 SPEEFGIWAANQLEEKILELGVDNVGAFIAEPIQGAGGVIVPPDSYWPRIKEILAKYDIL 256
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
F+ADEVIC FGR G FG D Y +KPD+++ AK L+S Y+P+G ++V EV V+ N
Sbjct: 257 FVADEVICGFGRTGEWFGSDFYDLKPDMMTIAKGLTSGYIPMGGLIVRDEVVAVL----N 312
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVN-KIAPKFQDGVKAFSDSPIIGE 359
G F+HGFTYSGHPV+ AVA+E ++I +E I+++ + K AP Q ++ SD P++GE
Sbjct: 313 EGGDFNHGFTYSGHPVAAAVALENIRIMREEKIIQRAHEKAAPYLQKRLRELSDHPLVGE 372
Query: 360 IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSP 419
+RG GL+ E +K+ + G+G C +G+++R GD ++++PP ++S
Sbjct: 373 VRGVGLLGAIELVKDKATRARYEGR-GVGMICRQFCFDNGLIMRAVGDTMIIAPPLVISE 431
Query: 420 EEVDELISKYGKALKAT 436
E+DEL++K K L T
Sbjct: 432 AEIDELVAKARKCLDLT 448
|
|
| UNIPROTKB|Q48CA6 PSPPH_4896 "Aminotransferase, class III" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] | Back alignment and assigned GO terms |
|---|
Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
Identities = 176/437 (40%), Positives = 263/437 (60%)
Query: 2 LAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQ 61
LAPF+ Q + P +I ++EG Y++D G K LD ++GLWC A+G L AA+ Q
Sbjct: 21 LAPFSDYKQLKEKGPRIITRAEGVYLWDSEGNKILDGMSGLWCVAIGYGREELADAASKQ 80
Query: 62 LNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNA 121
+ LP+Y+ F+ P L+LAK + E+ M VFFT SGSE NDT +++V +Y
Sbjct: 81 MRELPYYNLFFQTAHPPVLELAKAISEI-APQGMNHVFFTGSGSEGNDTMLRMVRHYWAL 139
Query: 122 LGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE- 180
G+P+KK I+R YHGST+ ASL G+ +H++ DLP P V+H P YW + G+
Sbjct: 140 KGQPDKKTIISRVNGYHGSTVAGASLGGMTYMHEQGDLPIPGVVHIPQP-YW-FGEGGDM 197
Query: 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDIL 240
T +E+ A LE I++ G E + AFIAE +Y+ K++ ++ +YDIL
Sbjct: 198 TPDEFGVWAAEQLEKKIIELGVENVGAFIAEPIQGAGGVIVPPDSYWPKIKEILSRYDIL 257
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
F ADEVIC FGR FG D Y +KPD+++ AK L+S Y+P+G ++V E+ V+ N
Sbjct: 258 FAADEVICGFGRTSEWFGSDFYGLKPDMMTIAKGLTSGYVPMGGLIVRDEIVAVL----N 313
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQV-NKIAPKFQDGVKAFSDSPIIGE 359
G F+HGFTYSGHPV+ AVA+E ++I +E IVE+V ++ AP Q ++ S+ P++GE
Sbjct: 314 EGGDFNHGFTYSGHPVAAAVALENIRILREERIVERVKSETAPYLQKRLRELSNHPLVGE 373
Query: 360 IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSP 419
+RG GL+ E +K E + + G G C +G+++R GD ++++PP ++S
Sbjct: 374 VRGVGLLGAIELVKDKVTRERYTDK-GAGMICRTFCFDNGLIMRAVGDTMIIAPPLVISF 432
Query: 420 EEVDELISKYGKALKAT 436
E+DEL+ K K L T
Sbjct: 433 AEIDELVEKARKCLDLT 449
|
|
| TIGR_CMR|SPO_1136 SPO_1136 "aminotransferase, class III" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
Identities = 165/421 (39%), Positives = 248/421 (58%)
Query: 18 VIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTK 77
VI+ + G ++ D +G K LD+ AGL+C +G + A Q L +YHS+ T+
Sbjct: 34 VIKTASGVFIEDRDGNKLLDAFAGLYCVNVGYGRQEIADAIADQARELAYYHSYVGHGTE 93
Query: 78 PSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSY 137
S+ LAK +L+ A+ M+KV+F GS+AN+T VKL+WYYNN LGRP KKK I+R + Y
Sbjct: 94 ASITLAKMILDRAPAN-MSKVYFGLGGSDANETNVKLIWYYNNILGRPEKKKIISRWRGY 152
Query: 138 HGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLI 197
HGS L+ SL+GL H+KFDLP V+HT+ P+Y+R A P ++E ++ A LE LI
Sbjct: 153 HGSGLVTGSLTGLELFHKKFDLPVNQVIHTEAPYYFRRADPDQSEAQFVAHCAAELEALI 212
Query: 198 LKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLGTMF 257
+EG +TIAAFI E Y+E +QAV++K+DIL IADEV+ FGRLGTMF
Sbjct: 213 EREGADTIAAFIGEPVLGTGGIVPPPAGYWEAIQAVLRKHDILLIADEVVTGFGRLGTMF 272
Query: 258 GCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVS 317
G D Y I+ D+++ AK L+SAY P+ ++S +V +V+ ++ G HG+TYS HP+
Sbjct: 273 GSDHYGIEADIITIAKGLTSAYAPLSGSIISDKVWKVLEQGTDENGPIGHGWTYSAHPIG 332
Query: 318 CAVAIEALKIYKERNIVEQVNKIAPKFQDGV-KAFSDSPIIGEIRGTGLILGTEFADNKS 376
A + LK+ N+V+ + + +A + P +GE+RG G++ EF +K
Sbjct: 333 AAAGVANLKLIDRLNLVQNAGETGAYLNATMTEALAGHPNVGEVRGAGMLCAVEFVKDKD 392
Query: 377 PNEPFPPEWGIGAYFGAQC-EKHGMLVRV--SGDNIMMSPPFIMSPEEVDELISKYGKAL 433
F IG A+ E+ ++ R GD + +PPF +S E D+++ +A+
Sbjct: 393 SRLFFDAADKIGPQISAKLLEQDKVIARAMPQGDILGFAPPFCLSRAEADQVVDATLRAV 452
Query: 434 K 434
+
Sbjct: 453 R 453
|
|
| UNIPROTKB|Q483I5 CPS_2054 "Aminotransferase, class III" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
Identities = 164/443 (37%), Positives = 256/443 (57%)
Query: 4 PFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLN 63
PFT L++ +SEG+YV+D +G+KYLD +AGLWC +G + A Q
Sbjct: 23 PFTDFSSFKKEGSLIMAESEGAYVFDTDGRKYLDGIAGLWCVNIGYGNEEMGQAMLDQTR 82
Query: 64 TLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALG 123
+P+Y SF + TT P+++L+ +L + S ++ VF+ GS +NDT V++V +Y N +G
Sbjct: 83 RIPYYSSFGHLTTPPAVELSTKLASLAPKS-LSHVFYGTGGSMSNDTAVRMVHFYFNRIG 141
Query: 124 RPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH-TDCPHYWRYAHPGETE 182
+PNKK+ I R YHGST ++ +L+G+ H FDL AP ++H P+ +R G T
Sbjct: 142 KPNKKQIITRTDGYHGSTYLSMTLTGVEYDHIGFDL-APDLVHRVSAPNVYRRP-AGMTV 199
Query: 183 EEYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFI 242
EY L N +E IL GPE +A F+AE Y ++V AV KKY + +
Sbjct: 200 PEYCDFLVNEVEQKILSIGPENVAMFVAEPIAGAGGVLVPPEGYHQRVAAVCKKYGVFIL 259
Query: 243 ADEVICAFGRLGTMFGCDK-YSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNT 301
+DEV+ AFGRLG MF +K + PD+++ AK L+S Y+P+ A ++S E+ +VI
Sbjct: 260 SDEVVTAFGRLGEMFSSEKIFGFTPDIITCAKGLTSGYIPLSANMISDEIYDVISVPQAE 319
Query: 302 LGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDG-VKAFSDSPIIGEI 360
SF+HGFTYSGHPVSCAV ++ ++I + ++ V ++ F++ ++ S+ P++G++
Sbjct: 320 GASFTHGFTYSGHPVSCAVGLKNIEIMERMDLCGHVREVGKYFENQLIEKLSNLPLVGDV 379
Query: 361 RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPE 420
RG+ ++ E NK E P IG +C+ G+LVR ++SPP +S
Sbjct: 380 RGSHFMMCIESVANKETKELLDPNIAIGNRIADKCQAVGLLVRPLAHKNILSPPLTLSVA 439
Query: 421 EVDELISKYGKAL-KATEERVKE 442
EVD ++S KA+ ++ VKE
Sbjct: 440 EVDFIVSTLHKAIIDVQDDLVKE 462
|
|
| TIGR_CMR|CPS_2054 CPS_2054 "aminotransferase, class III" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
Identities = 164/443 (37%), Positives = 256/443 (57%)
Query: 4 PFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLN 63
PFT L++ +SEG+YV+D +G+KYLD +AGLWC +G + A Q
Sbjct: 23 PFTDFSSFKKEGSLIMAESEGAYVFDTDGRKYLDGIAGLWCVNIGYGNEEMGQAMLDQTR 82
Query: 64 TLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALG 123
+P+Y SF + TT P+++L+ +L + S ++ VF+ GS +NDT V++V +Y N +G
Sbjct: 83 RIPYYSSFGHLTTPPAVELSTKLASLAPKS-LSHVFYGTGGSMSNDTAVRMVHFYFNRIG 141
Query: 124 RPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH-TDCPHYWRYAHPGETE 182
+PNKK+ I R YHGST ++ +L+G+ H FDL AP ++H P+ +R G T
Sbjct: 142 KPNKKQIITRTDGYHGSTYLSMTLTGVEYDHIGFDL-APDLVHRVSAPNVYRRP-AGMTV 199
Query: 183 EEYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFI 242
EY L N +E IL GPE +A F+AE Y ++V AV KKY + +
Sbjct: 200 PEYCDFLVNEVEQKILSIGPENVAMFVAEPIAGAGGVLVPPEGYHQRVAAVCKKYGVFIL 259
Query: 243 ADEVICAFGRLGTMFGCDK-YSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNT 301
+DEV+ AFGRLG MF +K + PD+++ AK L+S Y+P+ A ++S E+ +VI
Sbjct: 260 SDEVVTAFGRLGEMFSSEKIFGFTPDIITCAKGLTSGYIPLSANMISDEIYDVISVPQAE 319
Query: 302 LGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDG-VKAFSDSPIIGEI 360
SF+HGFTYSGHPVSCAV ++ ++I + ++ V ++ F++ ++ S+ P++G++
Sbjct: 320 GASFTHGFTYSGHPVSCAVGLKNIEIMERMDLCGHVREVGKYFENQLIEKLSNLPLVGDV 379
Query: 361 RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPE 420
RG+ ++ E NK E P IG +C+ G+LVR ++SPP +S
Sbjct: 380 RGSHFMMCIESVANKETKELLDPNIAIGNRIADKCQAVGLLVRPLAHKNILSPPLTLSVA 439
Query: 421 EVDELISKYGKAL-KATEERVKE 442
EVD ++S KA+ ++ VKE
Sbjct: 440 EVDFIVSTLHKAIIDVQDDLVKE 462
|
|
| TIGR_CMR|SPO_3471 SPO_3471 "aminotransferase, class III" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
Identities = 161/444 (36%), Positives = 255/444 (57%)
Query: 2 LAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQ 61
L PF+A + VI ++ G ++ D G++ LD++AGLWC +G L A Q
Sbjct: 22 LHPFSANNALGEEGTRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQ 81
Query: 62 LNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNA 121
+ LP+Y++F+ T P++ LA++L E+ + VFF GSEANDT +++V Y
Sbjct: 82 MRELPYYNTFFKTTHVPAIALAQKLAEL-APGDLNHVFFAGGGSEANDTNIRMVRTYWQN 140
Query: 122 LGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGET 181
G+P K I+R+ +YHGST+ +++L G+ +H + L P V H + P++W A G+
Sbjct: 141 KGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGL-IPDVHHINQPNWW--AEGGDM 197
Query: 182 E-EEYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDIL 240
+ EE+ A LE+ IL+ G +AAFIAE +Y+ ++Q + KYDIL
Sbjct: 198 DPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDIL 257
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
IADEVIC FGR G FG I+P +++ AK LSS Y PIG +V EV+ VI
Sbjct: 258 LIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDE- 316
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIA-PKFQDGVKAFSDSPIIGE 359
F+HG+TYSGHPV+ AVA+E L+I +E NI++ V +A P ++ +A +D P++GE
Sbjct: 317 ----FNHGYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALTDHPLVGE 372
Query: 360 IRGTGLILGTEFADNKSPNEPFPPEWG-IGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMS 418
+ G++ NK+ F E G IG +C + +++R GD +++SPP +++
Sbjct: 373 AKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHVGDRMIISPPLVIT 432
Query: 419 PEEVDELISKYGKALKATEERVKE 442
P E+DE+ + K+L + +++
Sbjct: 433 PAEIDEMFVRIRKSLDEAQAEIEK 456
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B7GHM5 | BIOA_ANOFW | 2, ., 6, ., 1, ., 6, 2 | 0.3089 | 0.9619 | 0.9471 | yes | no |
| Q7XN12 | GATP2_ORYSJ | 2, ., 6, ., 1, ., - | 0.7718 | 1.0 | 0.8993 | no | no |
| Q7XN11 | GATP1_ORYSJ | 2, ., 6, ., 1, ., - | 0.8501 | 1.0 | 0.8662 | yes | no |
| Q7MH19 | ARGD_VIBVY | 2, ., 6, ., 1, ., 1, 1 | 0.3100 | 0.8232 | 0.9131 | yes | no |
| P33189 | YHXA_BACSU | 2, ., 6, ., -, ., - | 0.3285 | 0.8903 | 0.8844 | yes | no |
| Q84P54 | GATP1_SOLLC | 2, ., 6, ., 1, ., - | 0.8568 | 1.0 | 0.8679 | N/A | no |
| Q84P52 | GATP3_SOLLC | 2, ., 6, ., 1, ., - | 0.8635 | 1.0 | 0.8596 | N/A | no |
| Q84P53 | GATP2_SOLLC | 2, ., 6, ., 1, ., - | 0.7807 | 0.9977 | 0.9737 | N/A | no |
| Q94CE5 | GATP_ARATH | 2, ., 6, ., 1, ., - | 0.8571 | 1.0 | 0.8869 | yes | no |
| O94562 | YGD3_SCHPO | 2, ., 6, ., -, ., - | 0.3257 | 0.9463 | 0.9215 | yes | no |
| B8BBZ7 | GATP3_ORYSI | 2, ., 6, ., 1, ., - | 0.8277 | 1.0 | 0.8764 | N/A | no |
| Q2FVJ6 | BIOA_STAA8 | 2, ., 6, ., 1, ., 6, 2 | 0.3113 | 0.9597 | 0.9491 | yes | no |
| P59323 | ARGD_VIBVU | 2, ., 6, ., 1, ., 1, 1 | 0.3100 | 0.8232 | 0.9131 | yes | no |
| Q6ZCF0 | GATP3_ORYSJ | 2, ., 6, ., 1, ., - | 0.8255 | 1.0 | 0.8764 | no | no |
| Q6ZH29 | GATP4_ORYSJ | 2, ., 6, ., 1, ., - | 0.7477 | 1.0 | 0.9254 | no | no |
| Q01K12 | GATP2_ORYSI | 2, ., 6, ., 1, ., - | 0.7718 | 1.0 | 0.8993 | N/A | no |
| Q01K11 | GATP1_ORYSI | 2, ., 6, ., 1, ., - | 0.8478 | 1.0 | 0.8662 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.6.1 | 0.766 |
| 4th Layer | 2.6.1.44 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 447 | |||
| PLN02760 | 504 | PLN02760, PLN02760, 4-aminobutyrate:pyruvate trans | 0.0 | |
| PRK06105 | 460 | PRK06105, PRK06105, aminotransferase; Provisional | 0.0 | |
| COG0161 | 449 | COG0161, BioA, Adenosylmethionine-8-amino-7-oxonon | 0.0 | |
| PRK07480 | 456 | PRK07480, PRK07480, putative aminotransferase; Val | 1e-178 | |
| PRK07482 | 461 | PRK07482, PRK07482, hypothetical protein; Provisio | 1e-171 | |
| cd00610 | 413 | cd00610, OAT_like, Acetyl ornithine aminotransfera | 1e-145 | |
| PRK07036 | 466 | PRK07036, PRK07036, hypothetical protein; Provisio | 1e-143 | |
| PRK07481 | 449 | PRK07481, PRK07481, hypothetical protein; Provisio | 1e-127 | |
| PRK06541 | 460 | PRK06541, PRK06541, hypothetical protein; Provisio | 1e-117 | |
| PRK09221 | 445 | PRK09221, PRK09221, beta alanine--pyruvate transam | 1e-116 | |
| PRK12403 | 460 | PRK12403, PRK12403, putative aminotransferase; Pro | 1e-113 | |
| PRK07483 | 443 | PRK07483, PRK07483, hypothetical protein; Provisio | 1e-111 | |
| COG0160 | 447 | COG0160, GabT, 4-aminobutyrate aminotransferase an | 1e-107 | |
| PRK05965 | 459 | PRK05965, PRK05965, hypothetical protein; Provisio | 1e-107 | |
| TIGR00508 | 417 | TIGR00508, bioA, adenosylmethionine-8-amino-7-oxon | 1e-107 | |
| pfam00202 | 338 | pfam00202, Aminotran_3, Aminotransferase class-III | 1e-103 | |
| PRK07678 | 451 | PRK07678, PRK07678, aminotransferase; Validated | 1e-103 | |
| PRK13360 | 442 | PRK13360, PRK13360, omega amino acid--pyruvate tra | 1e-100 | |
| PRK06917 | 447 | PRK06917, PRK06917, hypothetical protein; Provisio | 1e-100 | |
| COG4992 | 404 | COG4992, ArgD, Ornithine/acetylornithine aminotran | 1e-96 | |
| PRK06916 | 460 | PRK06916, PRK06916, adenosylmethionine--8-amino-7- | 1e-94 | |
| PRK02627 | 396 | PRK02627, PRK02627, acetylornithine aminotransfera | 1e-93 | |
| PRK06062 | 451 | PRK06062, PRK06062, hypothetical protein; Provisio | 2e-93 | |
| PRK05769 | 441 | PRK05769, PRK05769, 4-aminobutyrate aminotransfera | 9e-82 | |
| TIGR00707 | 379 | TIGR00707, argD, transaminase, acetylornithine/suc | 1e-80 | |
| PTZ00125 | 400 | PTZ00125, PTZ00125, ornithine aminotransferase-lik | 6e-78 | |
| PRK07030 | 466 | PRK07030, PRK07030, adenosylmethionine--8-amino-7- | 3e-77 | |
| PRK05964 | 423 | PRK05964, PRK05964, adenosylmethionine--8-amino-7- | 1e-74 | |
| PRK08117 | 433 | PRK08117, PRK08117, 4-aminobutyrate aminotransfera | 1e-72 | |
| TIGR01885 | 401 | TIGR01885, Orn_aminotrans, ornithine aminotransfer | 1e-68 | |
| PRK03244 | 398 | PRK03244, argD, acetylornithine aminotransferase; | 2e-67 | |
| PRK01278 | 389 | PRK01278, argD, acetylornithine transaminase prote | 1e-64 | |
| PRK08742 | 472 | PRK08742, PRK08742, adenosylmethionine--8-amino-7- | 2e-62 | |
| PRK08360 | 443 | PRK08360, PRK08360, 4-aminobutyrate aminotransfera | 4e-61 | |
| PRK11522 | 459 | PRK11522, PRK11522, putrescine--2-oxoglutarate ami | 2e-60 | |
| PRK02936 | 377 | PRK02936, argD, acetylornithine aminotransferase; | 9e-60 | |
| PRK05093 | 403 | PRK05093, argD, bifunctional N-succinyldiaminopime | 9e-59 | |
| TIGR03246 | 397 | TIGR03246, arg_catab_astC, succinylornithine trans | 3e-57 | |
| PRK08593 | 445 | PRK08593, PRK08593, 4-aminobutyrate aminotransfera | 2e-56 | |
| PRK06943 | 453 | PRK06943, PRK06943, adenosylmethionine--8-amino-7- | 4e-55 | |
| PLN02624 | 474 | PLN02624, PLN02624, ornithine-delta-aminotransfera | 1e-54 | |
| PRK04612 | 408 | PRK04612, argD, acetylornithine transaminase prote | 2e-54 | |
| PRK05630 | 422 | PRK05630, PRK05630, adenosylmethionine--8-amino-7- | 3e-54 | |
| PRK04073 | 396 | PRK04073, rocD, ornithine--oxo-acid transaminase; | 2e-52 | |
| PRK12381 | 406 | PRK12381, PRK12381, bifunctional succinylornithine | 2e-51 | |
| PLN00144 | 382 | PLN00144, PLN00144, acetylornithine transaminase | 8e-51 | |
| TIGR00700 | 420 | TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransf | 2e-50 | |
| PRK06082 | 459 | PRK06082, PRK06082, 4-aminobutyrate aminotransfera | 5e-50 | |
| PRK06173 | 429 | PRK06173, PRK06173, adenosylmethionine--8-amino-7- | 1e-49 | |
| PRK00854 | 401 | PRK00854, rocD, ornithine--oxo-acid transaminase; | 3e-49 | |
| COG0001 | 432 | COG0001, HemL, Glutamate-1-semialdehyde aminotrans | 4e-49 | |
| PRK07986 | 428 | PRK07986, PRK07986, adenosylmethionine--8-amino-7- | 4e-47 | |
| TIGR03372 | 442 | TIGR03372, putres_am_tran, putrescine aminotransfe | 1e-46 | |
| PRK06918 | 451 | PRK06918, PRK06918, 4-aminobutyrate aminotransfera | 1e-46 | |
| TIGR00709 | 442 | TIGR00709, dat, 2,4-diaminobutyrate 4-transaminase | 6e-46 | |
| PRK06931 | 459 | PRK06931, PRK06931, diaminobutyrate--2-oxoglutarat | 1e-42 | |
| PRK06149 | 972 | PRK06149, PRK06149, hypothetical protein; Provisio | 2e-42 | |
| PRK08088 | 425 | PRK08088, PRK08088, 4-aminobutyrate aminotransfera | 3e-42 | |
| PRK04260 | 375 | PRK04260, PRK04260, acetylornithine aminotransfera | 4e-42 | |
| PRK03715 | 395 | PRK03715, argD, acetylornithine transaminase prote | 1e-41 | |
| PRK06938 | 464 | PRK06938, PRK06938, diaminobutyrate--2-oxoglutarat | 9e-41 | |
| PRK06058 | 443 | PRK06058, PRK06058, 4-aminobutyrate aminotransfera | 4e-40 | |
| PRK05639 | 457 | PRK05639, PRK05639, 4-aminobutyrate aminotransfera | 9e-40 | |
| PRK07495 | 425 | PRK07495, PRK07495, 4-aminobutyrate aminotransfera | 1e-37 | |
| TIGR00713 | 423 | TIGR00713, hemL, glutamate-1-semialdehyde-2,1-amin | 4e-37 | |
| PRK06148 | 1013 | PRK06148, PRK06148, hypothetical protein; Provisio | 9e-37 | |
| PRK06777 | 421 | PRK06777, PRK06777, 4-aminobutyrate aminotransfera | 4e-36 | |
| PRK00062 | 426 | PRK00062, PRK00062, glutamate-1-semialdehyde amino | 1e-31 | |
| TIGR02407 | 412 | TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglu | 2e-30 | |
| PRK04013 | 364 | PRK04013, argD, acetylornithine/acetyl-lysine amin | 7e-30 | |
| PRK09792 | 421 | PRK09792, PRK09792, 4-aminobutyrate transaminase; | 7e-30 | |
| PRK12389 | 428 | PRK12389, PRK12389, glutamate-1-semialdehyde amino | 4e-25 | |
| PRK09264 | 425 | PRK09264, PRK09264, diaminobutyrate--2-oxoglutarat | 1e-23 | |
| PRK06209 | 431 | PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-a | 3e-23 | |
| PRK08297 | 443 | PRK08297, PRK08297, L-lysine aminotransferase; Pro | 3e-23 | |
| TIGR03251 | 431 | TIGR03251, LAT_fam, L-lysine 6-transaminase | 3e-20 | |
| PLN02482 | 474 | PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-a | 4e-20 | |
| PLN02974 | 817 | PLN02974, PLN02974, adenosylmethionine-8-amino-7-o | 1e-19 | |
| TIGR00699 | 464 | TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotran | 9e-19 | |
| PRK00615 | 433 | PRK00615, PRK00615, glutamate-1-semialdehyde amino | 1e-15 | |
| PRK07046 | 453 | PRK07046, PRK07046, aminotransferase; Validated | 3e-06 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 3e-04 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 0.001 |
| >gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Score = 978 bits (2530), Expect = 0.0
Identities = 401/447 (89%), Positives = 428/447 (95%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
MLAPFTAGWQSTD+ PLVIEKSEGSYVYD+NGKKYLD+LAGLWCTALGGSEPRLVAAAT
Sbjct: 57 MLAPFTAGWQSTDLEPLVIEKSEGSYVYDINGKKYLDALAGLWCTALGGSEPRLVAAATE 116
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
QLN LPFYHSFWNRTTKPSLDLAKELLEMFTA KM KVFFTNSGSEANDTQVKLVWYYNN
Sbjct: 117 QLNKLPFYHSFWNRTTKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYNN 176
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE 180
ALGRPNKKKFIAR KSYHGSTLI+ASLSGLPALHQKFDLPAPFVLHTDCPHYWR+ PGE
Sbjct: 177 ALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGE 236
Query: 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240
TEEE+STRLA+NLE+LILKEGPETIAAFIAEPV+GAGGVIPPPATYFEK+QAV+KKYDIL
Sbjct: 237 TEEEFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDIL 296
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
FIADEVICAFGRLGTMFGCDKY+IKPDLVS AKALSSAYMPIGA+LVSPE+S+VIHSQSN
Sbjct: 297 FIADEVICAFGRLGTMFGCDKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSN 356
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI 360
LGSF+HGFTYSGHPVSCAVA+EALKIYKERNI E VNKIAP+FQDG+KAFS SPIIGEI
Sbjct: 357 KLGSFAHGFTYSGHPVSCAVALEALKIYKERNIPEHVNKIAPRFQDGIKAFSGSPIIGEI 416
Query: 361 RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPE 420
RGTGLILGTEF DNKSPN+PFP EWG+GAYFGA+C+K GMLVRV+GDNIMMSPP I++PE
Sbjct: 417 RGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRVAGDNIMMSPPLIITPE 476
Query: 421 EVDELISKYGKALKATEERVKELKSQQ 447
EVDELIS YGKALKATEERV ELKSQ+
Sbjct: 477 EVDELISIYGKALKATEERVAELKSQK 503
|
Length = 504 |
| >gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 656 bits (1694), Expect = 0.0
Identities = 232/441 (52%), Positives = 312/441 (70%), Gaps = 1/441 (0%)
Query: 2 LAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQ 61
L P+T + + PLVIE+ EG YVYD GK+Y++ +AGLW ALG SE RLV AA Q
Sbjct: 17 LHPYTNARRHEEEGPLVIERGEGIYVYDDAGKRYIEGMAGLWSVALGFSEQRLVEAAARQ 76
Query: 62 LNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNA 121
+ LPFYH+F +++ P +DLA++L+ M M+KVFFTNSGSEANDT VKLVWYYNNA
Sbjct: 77 MKKLPFYHTFSHKSHGPVIDLAEKLVAM-APVPMSKVFFTNSGSEANDTVVKLVWYYNNA 135
Query: 122 LGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGET 181
LGRP KKK I+RQ+ YHG T+ +ASL+GLP H+ FDLP +LHT CPHY+R+ PGE+
Sbjct: 136 LGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGES 195
Query: 182 EEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILF 241
EE ++TRLAN LE LIL EGP+TIAAFI EPV+GAGGVI PP TY+EK+QAV++KYDIL
Sbjct: 196 EEAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILL 255
Query: 242 IADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNT 301
+ADEVIC FGR G MFGC+ + IKPD++ +K LSS+Y P+ A+L++ +V + I +S
Sbjct: 256 VADEVICGFGRTGNMFGCETFGIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGK 315
Query: 302 LGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIR 361
+G+F HGFT SGHPV+ AVA+E L I +ER++V + + Q ++A +D P++GE+R
Sbjct: 316 IGTFGHGFTASGHPVAAAVALENLAIIEERDLVGNAAERGARLQARLRALADHPLVGEVR 375
Query: 362 GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEE 421
G GLI E +K+ PF P +GA A +HG++ R GD + PP I++ +
Sbjct: 376 GVGLIAAVELVADKATKTPFEPPGKVGARANAAAHEHGVISRAMGDTLAFCPPLIITAAQ 435
Query: 422 VDELISKYGKALKATEERVKE 442
VDE++ ++G+AL V
Sbjct: 436 VDEMVDRFGRALDDVAAWVAA 456
|
Length = 460 |
| >gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 531 bits (1370), Expect = 0.0
Identities = 183/443 (41%), Positives = 264/443 (59%), Gaps = 14/443 (3%)
Query: 4 PFTAGWQSTD--VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQ 61
PFT Q D P VI ++EG Y+ D++G++YLD ++GLWC G P + A Q
Sbjct: 16 PFT---QMRDPLAEPRVIVRAEGVYLTDIDGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQ 72
Query: 62 LNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNA 121
L+ LP F T +P+++LA++L E+ + VFFT+SGSEA +T +K+ Y A
Sbjct: 73 LDKLPHVM-FGGFTHEPAIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRA 131
Query: 122 LGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQK-FDLPAPFVLHTDCPHYWRYAHPGE 180
G+P +KKFI+R+ YHG TL A S+ G AL +D P VLH P+ +R GE
Sbjct: 132 RGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGE 191
Query: 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIG-AGGVIPPPATYFEKVQAVVKKYDI 239
+EE+ A+ LE LIL+ GPETIAAFI EPV+G AGG++ PP Y ++V+ + KY I
Sbjct: 192 GDEEF-AEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGI 250
Query: 240 LFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQS 299
L IADEV FGR G MF C+ I PD++ AK L+ Y+P+ A+L S + E
Sbjct: 251 LLIADEVATGFGRTGKMFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGD 310
Query: 300 NTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA-FSDSPIIG 358
G+F HG TYSG+P++CA A+ L I +E +++E+V +I Q G++A +D P++G
Sbjct: 311 --AGAFMHGHTYSGNPLACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHPLVG 368
Query: 359 EIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMS 418
++RG GLI E +K+ PF E +GA A + G+L+R GD I + PP I++
Sbjct: 369 DVRGLGLIGAIELVADKATKTPF--EARVGARVRAAALERGLLIRPLGDVIYLMPPLIIT 426
Query: 419 PEEVDELISKYGKALKATEERVK 441
EE+DEL+ +AL T +
Sbjct: 427 REEIDELVDALREALDETLADLL 449
|
Length = 449 |
| >gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 506 bits (1306), Expect = e-178
Identities = 190/453 (41%), Positives = 277/453 (61%), Gaps = 22/453 (4%)
Query: 6 TAGWQSTD----VHPL------------VIEKSEGSYVYDVNGKKYLDSLAGLWCTALGG 49
TA Q+ D +HP VI ++EG Y++D G K LD +AGLWC +G
Sbjct: 7 TAELQALDAAHHLHPFSDMKALNEKGSRVITRAEGVYLWDSEGNKILDGMAGLWCVNVGY 66
Query: 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEAND 109
L AA Q+ LP+Y++F+ T P+++LA +L E+ VFFTNSGSEAND
Sbjct: 67 GRKELADAAARQMRELPYYNTFFKTTHPPAIELAAKLAEV-APPGFNHVFFTNSGSEAND 125
Query: 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDC 169
T +++V +Y G+P KK I+R+ YHGST+ ASL G+ +H++ DLP P ++H D
Sbjct: 126 TVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQ 185
Query: 170 PHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEK 229
P+++ T EE+ A LE IL+ G + +AAFI EP+ GAGGVI PPATY+ +
Sbjct: 186 PYWFGEG-GDMTPEEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPE 244
Query: 230 VQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSP 289
+Q + +KYDIL +ADEVIC FGR G FG + IKPDL++ AK L+S Y+P+GA+ V
Sbjct: 245 IQRICRKYDILLVADEVICGFGRTGEWFGSQHFGIKPDLMTIAKGLTSGYIPMGAVGVGD 304
Query: 290 EVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQV-NKIAPKFQDGV 348
V+EV+ + G F+HGFTYSGHPV+ AVA+ L+I ++ IVE+V + P Q +
Sbjct: 305 RVAEVLIEEG---GEFNHGFTYSGHPVAAAVALANLRILRDEGIVERVRDDTGPYLQKRL 361
Query: 349 KAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN 408
+ +D P++GE+RG GL+ E +K+ E F G+G C +G+++R GD
Sbjct: 362 RELADHPLVGEVRGVGLVGAIELVKDKATRERFEAGGGVGTICRDHCFANGLIMRAVGDR 421
Query: 409 IMMSPPFIMSPEEVDELISKYGKALKATEERVK 441
+++SPP +++ E+DEL+ K KAL AT +
Sbjct: 422 MIISPPLVITHAEIDELVEKARKALDATAAELG 454
|
Length = 456 |
| >gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 488 bits (1258), Expect = e-171
Identities = 186/429 (43%), Positives = 273/429 (63%), Gaps = 4/429 (0%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
++E EG + D G++Y+D+ AGL+C +G + A Q L +YH++
Sbjct: 33 GRIVEGGEGIRITDAQGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKELAYYHTYVGHG 92
Query: 76 TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQK 135
T+ S+ L+K +++ A M+KV++ SGS+AN+TQ+KLVWYYNN LGRP KKK I+R +
Sbjct: 93 TEASITLSKRIIDRAPA-GMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWR 151
Query: 136 SYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLED 195
YHGS ++ SL+GL HQ FDLP VLHT+ PHY+R A G +EE++S A+ LE+
Sbjct: 152 GYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEE 211
Query: 196 LILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT 255
LIL EGP+TIAAFIAEPV+G GG++PPPA Y+ +QAV+KKYDIL IADEV+ FGRLG+
Sbjct: 212 LILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGS 271
Query: 256 MFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHP 315
MFG D Y I+PDL++ AK L+SAY P+ +V +V +V+ S+ G+ HG+TYSGHP
Sbjct: 272 MFGSDHYGIEPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHP 331
Query: 316 VSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVK-AFSDSPIIGEIRGTGLILGTEFADN 374
+ A A+ L I + N+V ++ F+ ++ AF D P++GE+RG G++ EF +
Sbjct: 332 ICAAAALANLDILERENLVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGMLAAVEFVAD 391
Query: 375 KSPNEPFPPEWGIGAYFGAQCEKHGMLVRV--SGDNIMMSPPFIMSPEEVDELISKYGKA 432
+ PF P IG A + G++ R GD + +PP +++ E DE+++ A
Sbjct: 392 RDDRTPFDPALKIGPQVSAAALERGVIARAMPHGDILGFAPPLVLTRAEADEIVAIAKDA 451
Query: 433 LKATEERVK 441
+ R+
Sbjct: 452 VDEVLGRLL 460
|
Length = 461 |
| >gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Score = 420 bits (1081), Expect = e-145
Identities = 146/427 (34%), Positives = 235/427 (55%), Gaps = 31/427 (7%)
Query: 11 STDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS 70
+ +PLVI ++EG+Y+YDV+G +YLD L+G+ LG + P +V A QL L +
Sbjct: 14 TVRPYPLVIVRAEGAYLYDVDGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLTHFSL 73
Query: 71 FWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKF 130
+ +P+++LA+ LL + T + KVFF NSG+EA + +KL Y +KK
Sbjct: 74 GFF-YNEPAVELAELLLAL-TPEGLDKVFFVNSGTEAVEAALKLARAYTG------RKKI 125
Query: 131 IARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190
I+ + +YHG TL A SL+G F P VLH P+ +R LA
Sbjct: 126 ISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPP----------AELA 175
Query: 191 NNLEDLI--LKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC 248
++LE L L+E PE +AA I EP+ G GGVI PP Y + ++ + +K+ IL IADEV
Sbjct: 176 DDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQT 235
Query: 249 AFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHG 308
FGR G MF + + ++PD+V+ K L +P+GA+L E+ + G HG
Sbjct: 236 GFGRTGKMFAFEHFGVEPDIVTLGKGLGGG-LPLGAVLGREEIMDAFP-----AGPGLHG 289
Query: 309 FTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA-FSDSPIIGEIRGTGLIL 367
T+ G+P++CA A+ L++ +E ++E ++ ++ ++ P++G++RG GL++
Sbjct: 290 GTFGGNPLACAAALAVLEVLEEEGLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMI 349
Query: 368 GTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN-IMMSPPFIMSPEEVDELI 426
G E +++ PP+ + A + G+L+R SG N I + PP I++ EE+DE +
Sbjct: 350 GIELVKDRATK---PPDKELAAKIIKAALERGLLLRPSGGNVIRLLPPLIITEEEIDEGL 406
Query: 427 SKYGKAL 433
+AL
Sbjct: 407 DALDEAL 413
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413 |
| >gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 416 bits (1070), Expect = e-143
Identities = 159/435 (36%), Positives = 251/435 (57%), Gaps = 9/435 (2%)
Query: 8 GWQSTDVH----PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLN 63
W LVI ++EG YV D +G++YLD + G+WC +G + A Q
Sbjct: 22 PWHDFSSLGKEGSLVIVEAEGIYVTDADGRRYLDGIGGMWCVNVGYGREEMADAIADQAR 81
Query: 64 TLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALG 123
LP+Y F + T P+ +LA +L E+ + VF T GS A D+ ++ V YY N G
Sbjct: 82 RLPYYTPFGDMTNAPAAELAAKLAEL-APGDLNHVFLTTGGSTAVDSALRFVHYYFNVRG 140
Query: 124 RPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHP-GETE 182
RP KK I R +YHGST + ASL+G A +FD + V H P+ +R P G +E
Sbjct: 141 RPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYR--RPAGMSE 198
Query: 183 EEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFI 242
+ L + ED IL G + IAAFIAEP++G+GGVI PP Y +++ + ++YDIL+I
Sbjct: 199 AAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYI 258
Query: 243 ADEVICAFGRLGTMFGCDK-YSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNT 301
+DEV+ FGRLG F + + I+PD+++FAK L+S Y P+GA+++S + +VI +
Sbjct: 259 SDEVVTGFGRLGHFFASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAK 318
Query: 302 LGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIR 361
F+HGFTYSGHPV+CA A++ ++I + + E V ++ P F++ + + + P++G++R
Sbjct: 319 GNVFTHGFTYSGHPVACAAALKNIEIMEREGLCEHVREVGPYFEERLASLRELPLVGDVR 378
Query: 362 GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEE 421
G L+ E +K P + IG C++ G+LVR ++SPP I++ +
Sbjct: 379 GDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQERGLLVRPLEHLCVLSPPLIITRAQ 438
Query: 422 VDELISKYGKALKAT 436
+DE+++ A++ T
Sbjct: 439 IDEIVAILRAAIEET 453
|
Length = 466 |
| >gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 376 bits (968), Expect = e-127
Identities = 150/440 (34%), Positives = 246/440 (55%), Gaps = 1/440 (0%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
P + P++I + +G YVYD++GKK LD + GLW +G + + A
Sbjct: 10 FWHPMAHPAEMKARPPIIIVRGDGVYVYDIDGKKLLDGVGGLWNVNVGHNREEVKEAIVR 69
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
QL+ L +Y +F T +++L+ EL++MF M +VFF++ GS++ +T +KL Y
Sbjct: 70 QLDELEYYSTFDGTTHPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLARQYWK 129
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE 180
G+P + KFI+ ++ YHG+ AS++G + ++ P H + P +R +
Sbjct: 130 VRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQ 189
Query: 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240
EE + A LE I +GP+TIAAFIAEPV GAGGVI PPA ++ V+ V ++ IL
Sbjct: 190 DPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGIL 249
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
IADEV+ FGR G+ FG + +KPD++ AK ++S Y+P+GA +V+ +++ + ++
Sbjct: 250 LIADEVVTGFGRTGSWFGSRGWGVKPDIMCLAKGITSGYVPLGATMVNARIADAFEANAD 309
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD-SPIIGE 359
G+ HG+TYSGHPV+CA A+ L I ++ K +G++ + ++G+
Sbjct: 310 FGGAIMHGYTYSGHPVACAAALATLDIVVREDLPANAAKRGAYLLEGLQPLKERFELVGD 369
Query: 360 IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSP 419
+RG GL+L + +K+ EP P G ++G+LVR SG I++SPP ++
Sbjct: 370 VRGKGLMLALDLVADKATREPIDPSKGYANAVADVARENGVLVRPSGTKIILSPPLVIQR 429
Query: 420 EEVDELISKYGKALKATEER 439
E+VD ++ L A +
Sbjct: 430 EDVDRIVDALDAGLSAVPFQ 449
|
Length = 449 |
| >gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 350 bits (901), Expect = e-117
Identities = 158/439 (35%), Positives = 233/439 (53%), Gaps = 21/439 (4%)
Query: 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFW 72
D VI + EG Y++D GK+YLD LAGL+ +G L AA Q TL F+ W
Sbjct: 32 DAPVPVIVRGEGCYIWDDRGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAFF-PLW 90
Query: 73 NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIA 132
+ P+++LA E L + +VFFT GSEA ++ KL Y G+P K K I+
Sbjct: 91 SYAHPPAIELA-ERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVIS 149
Query: 133 RQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 192
R +YHG+T A +++GLPA F+ P +++R G+ E + A+
Sbjct: 150 RAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADR 209
Query: 193 LEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252
+E+ I EGP+T+AA EPV AGG PPP YFE+V+ + +YD+L ++DEVICAFGR
Sbjct: 210 IEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGR 269
Query: 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS 312
LG MFGC+++ PD+++ AK ++S Y P+GA++ S + E F HG+T+
Sbjct: 270 LGEMFGCERFGYVPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGPTM---FLHGYTFG 326
Query: 313 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFA 372
GHPVS AVA+ L I++ +++ V P F+ ++ D PI+G++RG G G E
Sbjct: 327 GHPVSAAVALANLDIFEREGLLDHVRDNEPAFRATLEKLLDLPIVGDVRGDGYFYGIELV 386
Query: 373 DNKSPNEPFPPE------WGI--GAYFGAQCEKHGMLVRVS--GDN-IMMSPPFIMSPEE 421
+K+ E F + G A F A G+ R GD + ++PP I EE
Sbjct: 387 KDKATKETFTDDESERLLRGFLSPALFEA-----GLYCRADDRGDPVVQLAPPLISGQEE 441
Query: 422 VDELISKYGKALKATEERV 440
DE+ L R+
Sbjct: 442 FDEIEQILRSVLTEAWARL 460
|
Length = 460 |
| >gnl|CDD|181707 PRK09221, PRK09221, beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 348 bits (894), Expect = e-116
Identities = 156/437 (35%), Positives = 236/437 (54%), Gaps = 17/437 (3%)
Query: 4 PFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLN 63
PFTA Q P ++ +EG Y D +G+K LD AGLWC G P +V A Q
Sbjct: 21 PFTANRQFKA-APRLLVSAEGMYYTDADGRKILDGTAGLWCCNAGHGRPEIVEAVARQAA 79
Query: 64 TLPFYHSFWNRTTKP-SLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNAL 122
TL + +F + P + +LA+ L E+ + VFFTNSGSE+ DT +K+ Y+ A
Sbjct: 80 TLDYAPAF--QMGHPLAFELAERLAEL-APGGLDHVFFTNSGSESVDTALKIALAYHRAR 136
Query: 123 GRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGET- 181
G+ + + I R++ YHG S+ G+ + F P V H PH +
Sbjct: 137 GQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHL--PHTLDLPENAFSK 194
Query: 182 -EEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240
+ E+ LA++LE L+ TIAA I EP+ G+ GV+ PP Y ++++ + K+ IL
Sbjct: 195 GQPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGIL 254
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
I DEVI FGRLG F +++ + PD+++FAK L++ +P+GA++ S E+ +
Sbjct: 255 LIFDEVITGFGRLGAAFAAERFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPE 314
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI 360
F HG+TYS HPV+CA + L IY+E ++ E+ ++AP F+D V + P + +I
Sbjct: 315 YAIEFFHGYTYSAHPVACAAGLATLDIYREEDLFERAAELAPYFEDAVHSLKGLPHVIDI 374
Query: 361 RGTGLILGTEFADNKSPNEPFPPEWGIGAY-FGAQCEKHGMLVRVSGDNIMMSPPFIMSP 419
R GL+ G E A P P G Y +C + G+LVR +GD I +SPP I+
Sbjct: 375 RNIGLVAGIELA-------PRPGAPGARGYEAFMKCFEKGLLVRYTGDTIALSPPLIIEK 427
Query: 420 EEVDELISKYGKALKAT 436
++DEL+ G AL+A
Sbjct: 428 AQIDELVDALGDALRAV 444
|
Length = 445 |
| >gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 340 bits (873), Expect = e-113
Identities = 168/431 (38%), Positives = 254/431 (58%), Gaps = 10/431 (2%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
P V+ + EG +++D +GK+YLD ++GLWCT LG L AAA Q+ LP+Y+ F++ T
Sbjct: 37 PRVMVRGEGLHLWDNDGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYYNMFFH-T 95
Query: 76 TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQK 135
T P++ ELL + +TNSGSEAN+ ++ V Y LG+P KK I R
Sbjct: 96 THPAVIELSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWN 155
Query: 136 SYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE-TEEEYSTRLANNLE 194
YHGSTL A +L G+ +H+ L P V H D P YW YA+ GE T E+ R A LE
Sbjct: 156 GYHGSTLAATALGGMKFMHEMGGL-IPDVAHIDEP-YW-YANGGELTPAEFGRRAALQLE 212
Query: 195 DLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLG 254
+ IL+ G E +A F+AEP GAGG+I PP +Y+ ++Q + ++YD+L ADEVI FGR G
Sbjct: 213 EKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTG 272
Query: 255 TMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGH 314
F + + +PD +S AK L+S Y+P+G +++S ++E + Q G F+HG TYSGH
Sbjct: 273 EWFAHEHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQG---GVFAHGLTYSGH 329
Query: 315 PVSCAVAIEALKIYKERNIVEQV-NKIAPKFQDGVK-AFSDSPIIGEIRGTGLILGTEFA 372
PV+ AVAI LK ++ +V +V + P Q ++ F D P++GE++G GL+ +FA
Sbjct: 330 PVAAAVAIANLKALRDEGVVTRVKDDTGPYLQRCLREVFGDHPLVGEVQGAGLVAALQFA 389
Query: 373 DNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKA 432
++K+ + F E + + G+++R + ++M+P + E+DEL+ K A
Sbjct: 390 EDKATRKRFANENDLAWRCRTIGFEEGVIIRSTLGRMIMAPALVAGRAEIDELVDKTRIA 449
Query: 433 LKATEERVKEL 443
+ T V L
Sbjct: 450 VDRTAREVGVL 460
|
Length = 460 |
| >gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 335 bits (861), Expect = e-111
Identities = 157/432 (36%), Positives = 244/432 (56%), Gaps = 19/432 (4%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYH-SFWNR 74
V EG Y+ D GK+YLD+ G + LG S PR++AA AQ++ L + H SF+
Sbjct: 13 LPVAVAGEGIYLIDATGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAYAHTSFF-- 70
Query: 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 134
TT+P+ LA L+ A + V+F + GSEA + +KL Y +G+P ++ FIAR+
Sbjct: 71 TTEPAEALADRLVAAAPAG-LEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARR 129
Query: 135 KSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHY-WRYAHPGETEEEYSTRLANNL 193
+SYHG+TL A ++ G + F P H P Y +R GE++E Y RLA+ L
Sbjct: 130 QSYHGNTLGALAIGGNAWRREPF-APLLIEAHHVSPCYAYREQRAGESDEAYGQRLADEL 188
Query: 194 EDLILKEGPETIAAFIAEPVIGA-GGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252
E IL+ GP+T+AAF+AE V+GA G +PP YF++++ V +Y +L I DEV+C GR
Sbjct: 189 EAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGR 248
Query: 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS 312
GT+F C++ + PDLV+ AK L + Y PIGA+L S + + I S G F HG TY
Sbjct: 249 TGTLFACEEDGVAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADGS---GFFQHGHTYL 305
Query: 313 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVK-AFSDSPIIGEIRGTGLILGTEF 371
GH +CA A+ ++ E ++ V + + ++ P +G+IRG GL +G E
Sbjct: 306 GHATACAAALAVQRVIAEDGLLANVRARGEQLRARLRERLGQHPHVGDIRGRGLFVGVEL 365
Query: 372 ADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR--------VSGDNIMMSPPFIMSPEEVD 423
+++ PF P + A + G++V V GD+++++PPFI++ ++D
Sbjct: 366 VADRATKAPFDPALKLHARIKREAMARGLMVYPMGGTIDGVRGDHVLLAPPFIITAAQID 425
Query: 424 ELISKYGKALKA 435
E++ + G A+ A
Sbjct: 426 EIVERLGDAIDA 437
|
Length = 443 |
| >gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 324 bits (833), Expect = e-107
Identities = 143/432 (33%), Positives = 231/432 (53%), Gaps = 31/432 (7%)
Query: 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNR 74
PLVI ++EG+Y+YDV+G +YLD L+G+ LG + PR+V A QL L H+ R
Sbjct: 38 FPLVIVRAEGAYLYDVDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHTHT---R 94
Query: 75 --TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIA 132
+P ++LA++L + S + KVFF NSG+EA + +K+ Y GRP IA
Sbjct: 95 DLYYEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYT---GRPG---VIA 148
Query: 133 RQKSYHGSTLIAASLSGLPALHQK-FDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191
++HG TL A SL+G ++ F P V H P+ +R G EE
Sbjct: 149 FDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYR-CPFGIGGEECGDDALE 207
Query: 192 NLEDLI--LKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA 249
+E + L+ GPE +AA I EP+ G GG+I PP + + ++ + +++ IL IADEV
Sbjct: 208 YIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTG 267
Query: 250 FGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGF 309
FGR G MF + + ++PD+V+ AK+L +P+ A++ E+ HG
Sbjct: 268 FGRTGKMFAFEHFGVEPDIVTLAKSL-GGGLPLSAVVGRAEI--------MDWPPGGHGG 318
Query: 310 TYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILG 368
T+ G+PV+CA A+ L + +E N++E+ ++ +D ++ P+IG++RG GL++G
Sbjct: 319 TFGGNPVACAAALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHPLIGDVRGLGLMIG 378
Query: 369 TEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN---IMMSPPFIMSPEEVDEL 425
E ++ EP + A A+ + G+L+ G + + + PP +S EE+DE
Sbjct: 379 VELVKDRDTKEPDA---ELAAKIVARAFERGLLLLTCGPHGNVLRILPPLTISDEELDEG 435
Query: 426 ISKYGKALKATE 437
+ +ALK
Sbjct: 436 LDILEEALKEAL 447
|
Length = 447 |
| >gnl|CDD|180330 PRK05965, PRK05965, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 324 bits (832), Expect = e-107
Identities = 142/424 (33%), Positives = 236/424 (55%), Gaps = 3/424 (0%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
V+ ++G+ + D +G + LD+ AGLWC +G + +V AA Q+ LP+ +++
Sbjct: 29 VTVLASAKGATLTDASGHQLLDAFAGLWCVNVGYGQESIVEAAAEQMRELPYATGYFHFG 88
Query: 76 TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQK 135
++P++ LA +L E S + V+FT GS+A D+ V+ + +Y NA GRP+KK+FI+ ++
Sbjct: 89 SEPAIRLAAKLAERAPGS-LNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLER 147
Query: 136 SYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLED 195
YHGS+ + A L+ LPA H+ FDLP P+ P+ +R + + + +A L
Sbjct: 148 GYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAA-LRA 206
Query: 196 LILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT 255
+ + G + +AAF EP+ G+GGVI PP + + ++ ++ ILF+ADEVI FGR G
Sbjct: 207 KVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGP 266
Query: 256 MFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHP 315
+F C+ + PDL++ AK L+S Y+P+GA+L+S V + I + HG+TYS HP
Sbjct: 267 LFACEAEGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHP 326
Query: 316 VSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNK 375
VS AV +E L++Y E ++ K P+F G+ A P++G++RG GL+ E +K
Sbjct: 327 VSAAVGLEVLRLYHEGGLLANGQKAGPRFAAGLDALRAHPLVGDVRGRGLLGALELVADK 386
Query: 376 SPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELISKYGKALK 434
+ PF + +G++ R GD ++ +P + E D + + K L
Sbjct: 387 ATKTPFDAALDPADRIFDRAYANGLVFRAFGDGVLGFAPALCCTEGEFDLIFERTRKTLD 446
Query: 435 ATEE 438
Sbjct: 447 DVLA 450
|
Length = 459 |
| >gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Score = 322 bits (828), Expect = e-107
Identities = 141/425 (33%), Positives = 230/425 (54%), Gaps = 23/425 (5%)
Query: 4 PFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLN 63
P+T + PL IE++EG Y+YD +G++Y+D ++ W G + P + AA QL+
Sbjct: 4 PYTQ--MKDALPPLPIERAEGVYLYDEDGREYIDGISSWWVNIHGHNHPEINAAIKEQLD 61
Query: 64 TLPFYHS-FWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNAL 122
L H F T +P+++LA+ L+E+ T + KVFF++SGS A + +K+ Y
Sbjct: 62 KLE--HVMFGGLTHEPAIELAERLVEI-TPEGLEKVFFSDSGSVAVEVALKMALQYWQNQ 118
Query: 123 GRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPF-VLHTDCPHYWRYAHPGET 181
GRP K +F+A + YHG T A S+ + H F+ P F V+ P +R P +
Sbjct: 119 GRPGKTRFLAFRNGYHGDTFGAMSVGDVGGFHALFE-PLLFEVVFIPAPPCYRCWDPDDC 177
Query: 182 EEEYSTRLANNLEDLILKEGPETIAAFIAEPVI-GAGGVIPPPATYFEKVQAVVKKYDIL 240
E E LE L+ + E IAAFI EP++ GAGG+ P Y K++ + +Y +L
Sbjct: 178 EAEC----LAALEALLEEHADE-IAAFIVEPLVQGAGGMRFYPPEYLRKLRELCDEYGVL 232
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
IADE+ FGR G +F C+ + PD++ +K L+ Y+P+ A L + E+ E +
Sbjct: 233 LIADEIATGFGRTGKLFACEHAGVTPDILCLSKGLTGGYLPLAATLTTDEIYEAF-YSDD 291
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI 360
+F HG TY+G+P++CA A+ +L + +E + +EQV +I + + G+ D P + ++
Sbjct: 292 EGKAFMHGHTYTGNPLACAAALASLDLLEEEDWLEQVARIEAQLRAGLAPLRDHPGVADV 351
Query: 361 RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPE 420
R G I E EP+ GA + G+L+R G+ I + PP+I++ E
Sbjct: 352 RVLGAIGAVEL---VRDVEPYI-----GAKIQQFFLERGVLLRPLGNVIYLMPPYIITDE 403
Query: 421 EVDEL 425
E+++L
Sbjct: 404 ELEKL 408
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 417 |
| >gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III | Back alignment and domain information |
|---|
Score = 309 bits (795), Expect = e-103
Identities = 128/356 (35%), Positives = 194/356 (54%), Gaps = 18/356 (5%)
Query: 18 VIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTK 77
I K++G ++YDV+G++YLD L+G+ LG P++V A Q + L + SF TT+
Sbjct: 1 FITKAKGVWLYDVDGRRYLDFLSGIAVVNLGHCHPKIVQAVKEQADKL-THTSFRAFTTE 59
Query: 78 PSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSY 137
P+L LA++L + T + +VFF NSGSEAN+T +KL Y G K K IA +
Sbjct: 60 PALQLAEKLAQ-LTPGGLDRVFFMNSGSEANETAIKLARQYAKKKGATGKTKIIAFSGGF 118
Query: 138 HGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLI 197
HG TL A S++G + F P V P Y EEE A+ LI
Sbjct: 119 HGRTLGALSVTGSSGYKKGFGPSLPGVYF--LP----YPDLEAAEEE--LACADEALRLI 170
Query: 198 LKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF 257
+ IAA I EP+ G GGV+PPP + ++ + KK+ +L IADEV FGR G +F
Sbjct: 171 KAVHDDNIAAVIVEPIQGEGGVVPPPPGFLAGLREICKKHGVLLIADEVQTGFGRTGKLF 230
Query: 258 GCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVS 317
C+ Y + PD+++ AKAL+ P+ A+L + E+ + H SHG T+ G+P++
Sbjct: 231 ACEHYGVTPDIMTLAKALTGGL-PLSAVLATAEIMQAFHPG-------SHGGTFGGNPLA 282
Query: 318 CAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFAD 373
CA A+ L I ++ N+++ + + G+ A D P+IG++RG GL++ E
Sbjct: 283 CAAALAVLDIIEDENLLQNAQEKGDYLRKGLLALQDKPVIGDVRGKGLMIAIEIVK 338
|
Length = 338 |
| >gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 313 bits (803), Expect = e-103
Identities = 144/428 (33%), Positives = 247/428 (57%), Gaps = 16/428 (3%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
+V+ K+EG++V D+ G +YLD ++GLWC +G L AA QL TL ++ ++
Sbjct: 30 TMVVAKAEGAWVTDIQGNRYLDGMSGLWCVNVGYGRKELAEAAYEQLKTLSYFP--LTQS 87
Query: 76 TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQK 135
+P++ LA++L E + +FF+NSGSEAN+T K+ Y+ G P++ KFI+R +
Sbjct: 88 HEPAIKLAEKLNEWLGGEYV--IFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYR 145
Query: 136 SYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLED 195
+YHG+++ A + +G K++ AP LH P +R E+E+ Y ++
Sbjct: 146 AYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYR-MPGIESEDIYDLECVKEIDR 204
Query: 196 LILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT 255
++ E ETIAA I EP+I GGV+ PP Y + V+ + +K+ L I+DEVIC FGR G
Sbjct: 205 VMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGK 264
Query: 256 MFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHP 315
FG Y +KPD+++ AK ++SAY+P+ A V E+ E + F H T+ G+P
Sbjct: 265 AFGFMNYGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEY-EHFRHVNTFGGNP 323
Query: 316 VSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADN 374
+CA+A++ L+I + N++E+ ++ + +K + P++G+IRG GL++G E ++
Sbjct: 324 AACALALKNLEIMENENLIERSAQLGELLLEQLKEELGEHPLVGDIRGKGLLVGIELVND 383
Query: 375 KSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGD------NIM-MSPPFIMSPEEVDELIS 427
K EP + + + A C++ G+++ +GD N++ +SPP ++S EE+ ++
Sbjct: 384 KETKEPADND-KVASVVAA-CKEKGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVG 441
Query: 428 KYGKALKA 435
AL+
Sbjct: 442 TLKTALER 449
|
Length = 451 |
| >gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 307 bits (787), Expect = e-100
Identities = 148/437 (33%), Positives = 230/437 (52%), Gaps = 15/437 (3%)
Query: 4 PFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLN 63
PFTA Q P ++ ++G Y +G++ LD AGLWC G P +V A AQ
Sbjct: 18 PFTANRQFKK-APRLLVAAKGMYYTTHDGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAG 76
Query: 64 TLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALG 123
L + +F K +LA + E+ + VFFTNSGSE+ DT +K+ Y+ A G
Sbjct: 77 ELDYAPAFQMGHPKA-FELANRIAEIAPGG-LNHVFFTNSGSESVDTALKIALAYHRARG 134
Query: 124 RPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGET-- 181
++ + I R++ YHG S+ G+ + F P V H PH A +
Sbjct: 135 EGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHL--PHTLDLARNAFSKG 192
Query: 182 EEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILF 241
+ E+ LA+ LE L+ TIAA I EPV G+ GV+ PP Y ++++ + K+ IL
Sbjct: 193 QPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILL 252
Query: 242 IADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNT 301
I DEVI FGRLG F + + PDL++ AK L++ +P+GA+ VS E+ +
Sbjct: 253 IFDEVITGFGRLGAPFAAQYFGVTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEA 312
Query: 302 LGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIR 361
F HG+TYSGHP++CA A+ L +Y+ ++ + ++AP ++D + + D+P + +IR
Sbjct: 313 GIEFFHGYTYSGHPLACAAALATLDLYEREGLLTRAARLAPYWEDALHSLRDAPHVIDIR 372
Query: 362 GTGLILGTEFADNKSPNEPFPPEWGIGAY-FGAQCEKHGMLVRVSGDNIMMSPPFIMSPE 420
GL+ E A P + G AY +C + G+++R +GD + +SPP I+
Sbjct: 373 NLGLVGAVELA-------PRDGKPGKRAYEVFLKCFEKGLMIRYTGDILALSPPLIIEEA 425
Query: 421 EVDELISKYGKALKATE 437
++DEL +ALK T
Sbjct: 426 QIDELFDILAQALKETI 442
|
Length = 442 |
| >gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 306 bits (786), Expect = e-100
Identities = 144/438 (32%), Positives = 227/438 (51%), Gaps = 28/438 (6%)
Query: 18 VIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPF-YHSFWNRTT 76
VI +G Y+YD NG KY D +G +G + A Q + F Y S + T+
Sbjct: 16 VISHGKGVYLYDQNGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEVSFVYRSQF--TS 73
Query: 77 KPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKS 136
+P+ LAK+L ++ + FF NSGSEAN+T +K+ + G K K ++R S
Sbjct: 74 EPAEKLAKKLSDLSPGD-LNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMS 132
Query: 137 YHGSTLIAASLSGLPALHQKF-----DLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191
YHG T+ A S+SG P Q+F D P P+ +R + A
Sbjct: 133 YHGITMGALSMSGHPLRRQRFVSLLEDYPT-----ISAPYCYRCPV-QKVYPTCQLACAT 186
Query: 192 NLEDLILKEGPETIAAFIAEPVIGA-GGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250
LE I + G E IAAFIAEP+IGA G + PP Y++ ++ + YDILFIADEV+
Sbjct: 187 ELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGL 246
Query: 251 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFT 310
GR G MF + + ++PD+++ K L + Y PI A +VS V E I S ++ S G T
Sbjct: 247 GRTGAMFAMEHWGVEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILRGSRSIMS---GHT 303
Query: 311 YSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVK-AFSDSPIIGEIRGTGLILGT 369
S +P+S A A+ L+ ++ N+ E+ + G++ S IIG++RG GL++G
Sbjct: 304 LSANPLSAATALAVLEYMEKHNLPEKAAEKGEYLIKGLQKVQQQSTIIGDVRGKGLLIGV 363
Query: 370 EFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLV--------RVSGDNIMMSPPFIMSPEE 421
EF +K +PF + + + K+G+L+ GD ++++PP ++ E
Sbjct: 364 EFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQDGKEGDAVIIAPPMTITYSE 423
Query: 422 VDELISKYGKALKATEER 439
+DEL+S + K+++ ++
Sbjct: 424 LDELLSIFAKSVEEMMQK 441
|
Length = 447 |
| >gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 295 bits (758), Expect = 1e-96
Identities = 133/427 (31%), Positives = 208/427 (48%), Gaps = 58/427 (13%)
Query: 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS---F 71
P+VI + EG+YV+D G++YLD AG+ LG P LV A Q L +H F
Sbjct: 24 LPVVIVRGEGAYVWDQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKL--WHVSNLF 81
Query: 72 WNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFI 131
+N P +LA++L+E+ +VFF NSG+EAN+ +KL Y G P K K I
Sbjct: 82 YNE---PQAELAEKLVELS--PFADRVFFCNSGAEANEAALKLARKYT---GDPEKSKII 133
Query: 132 ARQKSYHGSTLIAASLSGLPALHQKF-DLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190
A + S+HG TL A S +G P + F L F + +
Sbjct: 134 AFENSFHGRTLGALSATGQPKYRKGFGPLLPGF-------RHVPF--------------- 171
Query: 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250
N++E L E AA I EP+ G GGVIP P + + ++ + ++ L I DEV
Sbjct: 172 NDIEAL-EAAIDEDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGL 230
Query: 251 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFT 310
GR G +F + Y ++PD+++ AKAL + PIGA+L + E++ HG T
Sbjct: 231 GRTGKLFAYEHYGVEPDILTLAKALGGGF-PIGAMLATEEIASAFT-------PGDHGST 282
Query: 311 YSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD-SPIIGEIRGTGLILGT 369
+ G+P++CAVA+ L++ E ++E V + ++ P++ E+RG GL++G
Sbjct: 283 FGGNPLACAVALAVLEVLLEEGLLENVREKGEYLLQRLRELKRRYPLVKEVRGRGLMIGI 342
Query: 370 EFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELISK 428
E + + G+LV +G N++ PP +++ EE+DE +
Sbjct: 343 ELKEPY-----------RARDIVRALREEGVLVLPAGPNVIRFLPPLVITEEEIDEALDA 391
Query: 429 YGKALKA 435
+AL A
Sbjct: 392 LERALAA 398
|
Length = 404 |
| >gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 292 bits (749), Expect = 1e-94
Identities = 143/440 (32%), Positives = 234/440 (53%), Gaps = 11/440 (2%)
Query: 4 PFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLN 63
PFT + PL+IE+ EG +YDVNG +Y D ++ +W G P L A QLN
Sbjct: 27 PFTQMKDYLEEDPLIIERGEGRKLYDVNGNEYYDGVSSIWLNVHGHQVPELDEAIREQLN 86
Query: 64 TLPFYHS-FWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNAL 122
+ HS PS+ LA++L+E+ + KVF+++SG+ A + +K+ + Y
Sbjct: 87 KIA--HSTLLGLANVPSILLAEKLIEV-VPEGLKKVFYSDSGATAVEIAIKMAFQYWQNK 143
Query: 123 GRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHT-DCPHYWRYAHP-GE 180
G+P K++F+ + +YHG T+ A S+ + HQ + + + P+ + Y P G
Sbjct: 144 GKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVY---SSLLFEAIKMPYPYTYRSPYGN 200
Query: 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVI-GAGGVIPPPATYFEKVQAVVKKYDI 239
+ E + LE+L LKE E IAA I EP++ GAGG+I P Y + ++ + KY++
Sbjct: 201 DKAEIVKKHLEELEEL-LKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNV 259
Query: 240 LFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQS 299
LFI DEV FGR G MF C+ ++ PD+++ K L+ Y+PI + + E+ +
Sbjct: 260 LFITDEVATGFGRTGKMFACEHENVTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDY 319
Query: 300 NTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGE 359
+F HG +Y+G+P+ CAVA+ L++Y++ N++EQV + ++ +G+
Sbjct: 320 EEQKTFFHGHSYTGNPLGCAVALANLELYEKTNLIEQVARKTEYVATQLEDLFALKHVGD 379
Query: 360 IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSP 419
IR GL++G E NK EPF +G + + GML R G+ I+ PP +
Sbjct: 380 IRQLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSRELGMLTRPLGNTIVFMPPLASTI 439
Query: 420 EEVDELISKYGKALKATEER 439
+E+DE++ KA+ E
Sbjct: 440 DELDEMLRILYKAISDVTEG 459
|
Length = 460 |
| >gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 287 bits (738), Expect = 1e-93
Identities = 130/425 (30%), Positives = 209/425 (49%), Gaps = 57/425 (13%)
Query: 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS---F 71
P+ + EG+ ++D +GK+YLD LAG+ LG P+LV A Q L H+ +
Sbjct: 21 LPIAFVRGEGARLWDDDGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKL--IHTSNLY 78
Query: 72 WNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFI 131
+ +P +LA++L+E+ S M KVFF NSG+EAN+ +KL Y + G K + I
Sbjct: 79 YI---EPQEELAEKLVEL---SGMDKVFFCNSGAEANEAAIKLARKYGHKKGI-EKPEII 131
Query: 132 ARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191
+ S+HG TL S +G P + F+ P V G + N
Sbjct: 132 TAENSFHGRTLATLSATGQPKYQEGFE---PLV-------------EGFIYVPF-----N 170
Query: 192 NLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG 251
++E L +T A + EP+ G GGV P Y + ++ + + IL I DEV G
Sbjct: 171 DIEALKAAITDKTAAVML-EPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMG 229
Query: 252 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTY 311
R G +F Y I+PD+++ AK L +PIGA+L +V++V HG T+
Sbjct: 230 RTGKLFAYQHYGIEPDIMTLAKGLGGG-VPIGAVLAKEKVADV-------FTPGDHGSTF 281
Query: 312 SGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTE 370
G+P++CA A+ ++I +E ++E ++ + ++ P I E+RG GL++G E
Sbjct: 282 GGNPLACAAALAVIEIIEEEGLLENAAEVGEYLRAKLRELLEKYPGIKEVRGLGLMIGIE 341
Query: 371 FADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN-IMMSPPFIMSPEEVDELISKY 429
A + + G+L+ V+GDN + + PP I+S EE+DE + +
Sbjct: 342 LDRP-------------AAEIVKKALEKGLLINVTGDNVLRLLPPLIISKEEIDEAVDRL 388
Query: 430 GKALK 434
+ LK
Sbjct: 389 EEVLK 393
|
Length = 396 |
| >gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 288 bits (740), Expect = 2e-93
Identities = 141/439 (32%), Positives = 224/439 (51%), Gaps = 32/439 (7%)
Query: 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWN 73
++P+VI +EGSYV+D G++YLD + L T +G P++VAA Q L
Sbjct: 34 INPMVIAGAEGSYVWDYEGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLC------- 86
Query: 74 RTTKPSL------DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNK 127
T P+ + A+ + E ++KVFFTN G++AN+ V++ + GRP
Sbjct: 87 -TVAPAHANDARSEAARLIAER-APGDLSKVFFTNGGADANEHAVRMARLHT---GRP-- 139
Query: 128 KKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187
K ++ +SYHG T A +L+G P D V+H P +R TEEE
Sbjct: 140 -KVLSAYRSYHGGTGSAINLTGDPRRWPN-DTGRAGVVHFFGPFLYRSEFHATTEEEECE 197
Query: 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVI 247
R +LE +I EGP TIAA + E V G G++ PP Y V+ + ++ I+ IADEV+
Sbjct: 198 RALAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVM 257
Query: 248 CAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSH 307
FGR G F + + + PDL++FAK ++S Y+P+G + +S ++ + +
Sbjct: 258 AGFGRTGKWFAIEHFGVVPDLITFAKGVNSGYVPLGGVAISEAIAATFADR-----PYPG 312
Query: 308 GFTYSGHPVSCAVAIEALKIYKERNIVEQVNKI-APKFQDGVKAFSD-SPIIGEIRGTGL 365
G TYSGHP++CA A+ + +E IVE +I A G++ ++ P +GE+RG G+
Sbjct: 313 GLTYSGHPLACAAAVATINAMEEEGIVENAARIGAEVLGPGLRELAERHPSVGEVRGLGV 372
Query: 366 ILGTEFADNKSPNEPFPPEWGIGAY---FGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEV 422
E ++ EP P A A C++ G+L V+G+ I + PP ++ +EV
Sbjct: 373 FWALELVADRETREPLAPYGASSAAMAAVKAACKERGLLPFVNGNRIHVVPPCTVTEDEV 432
Query: 423 DELISKYGKALKATEERVK 441
E ++ AL +
Sbjct: 433 REGLAILDAALAVADAATA 451
|
Length = 451 |
| >gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 258 bits (662), Expect = 9e-82
Identities = 140/441 (31%), Positives = 230/441 (52%), Gaps = 36/441 (8%)
Query: 2 LAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQ 61
LA T W PLVIE+ EG +V DV+G YLD AG+ T +G + P++V A Q
Sbjct: 28 LAQSTRRWY-----PLVIERGEGVWVEDVDGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQ 82
Query: 62 LNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNA 121
++S + +P+++LA+ L+E+ KVFFTNSG+E+N+ +K+ Y+
Sbjct: 83 AEKF-LHYSLTDFYYEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIARYHT-- 139
Query: 122 LGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP-APFVLHTDCPHYWRYAHPGE 180
GR IA ++HG T + SL+ + +K P P V+H P+ +R E
Sbjct: 140 -GRK---YIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIE 195
Query: 181 TEEEYSTRLANNLEDLILKE--GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYD 238
EE + + +ED + K+ PE +AA I EP+ G GG + PP +F++++ + KY
Sbjct: 196 NPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYG 255
Query: 239 ILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQ 298
IL I DEV GR G MF + + ++PD+++ AKA++ +P+GA++ E+
Sbjct: 256 ILLIDDEVQTGMGRTGKMFAIEHFGVEPDIITLAKAIAGG-LPLGAVIGRAEL------- 307
Query: 299 SNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PII 357
L SH T+ G+PV+ A A+ L+ +E ++E K+ + +K + I
Sbjct: 308 -MFLPPGSHANTFGGNPVAAAAALATLEELEE-GLLENAQKLGEYLRKELKELKEKYEFI 365
Query: 358 GEIRGTGLILGTEFADNKSPNEPFPPE--WGIGAYFGAQCEKHGMLVRVSGDN-IMMSPP 414
G++RG GL++G E ++ EP P + F K G+L+ +G + I + PP
Sbjct: 366 GDVRGLGLMIGVELVKDR--KEPDPKLRDKVLYEAF-----KRGLLLLGAGKSAIRIIPP 418
Query: 415 FIMSPEEVDELISKYGKALKA 435
I++ EE D + +A+K
Sbjct: 419 LIITEEEADIGLEILEEAIKE 439
|
Length = 441 |
| >gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine family | Back alignment and domain information |
|---|
Score = 253 bits (649), Expect = 1e-80
Identities = 139/420 (33%), Positives = 209/420 (49%), Gaps = 52/420 (12%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
P+ I + +G+YVYDVNGK+YLD +AG+ +LG + P+LV A QL L H
Sbjct: 10 PVKIVRGKGAYVYDVNGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKL--VHVSNLYY 67
Query: 76 TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQK 135
T+P +LA++L+E S +VFF NSG+EAN+ +KL Y G KKK IA +
Sbjct: 68 TEPQEELAEKLVE---HSGADRVFFCNSGAEANEAALKLARKYTGDKG-KEKKKIIAFEN 123
Query: 136 SYHGSTLIAASLSGLPALHQKFD-LPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLE 194
S+HG T+ A S +G P + F+ L F Y Y +L+
Sbjct: 124 SFHGRTMGALSATGQPKYQKGFEPLVPGF-------SYAPYNDI------------ESLK 164
Query: 195 DLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLG 254
I E AA I EP+ G GGV P A + + ++ + K D L I DEV GR G
Sbjct: 165 KAIDDE----TAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTG 220
Query: 255 TMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGH 314
F + Y I+PD+++ AK L PIGA L EV+E T G HG T+ G+
Sbjct: 221 KFFAYEHYGIEPDIITLAKGLGGGV-PIGATLAKEEVAEAF-----TPG--DHGSTFGGN 272
Query: 315 PVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADN 374
P++CA A+ L++ ++ ++E V + F++ ++ + E+RG GL+LG E
Sbjct: 273 PLACAAALAVLEVIEKERLLENVKEKGDYFKERLEELGKNYPNKEVRGKGLMLGIELEAP 332
Query: 375 KSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELISKYGKAL 433
+ + G+LV +G ++ PP I++ EE+DE +S +A+
Sbjct: 333 -------------CKDIVKKALEKGLLVNCAGPKVLRFLPPLIITKEEIDEAVSALEEAI 379
|
This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from E. coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism (See MEDLINE:98361920). Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097). Length = 379 |
| >gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 247 bits (633), Expect = 6e-78
Identities = 138/436 (31%), Positives = 213/436 (48%), Gaps = 52/436 (11%)
Query: 13 DVHPL--VIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY-H 69
+ HPL V+++ +G +V+DV GKKY D L+ G P+++AA Q L
Sbjct: 9 NYHPLPVVLKRGKGVFVWDVEGKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLTSR 68
Query: 70 SFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV--WYYNNALGRPNK 127
+F+N + K + ++F KV NSG+EA +T +K W Y N+
Sbjct: 69 AFYNDVLGLA---EKYITDLF---GYDKVLPMNSGAEAGETALKFARKWGYEVKGIPENQ 122
Query: 128 KKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187
K I ++ G T+ A S S P + F PFV PG +Y
Sbjct: 123 AKIIFCNGNFSGRTIGACSASTDPKCYNNF---GPFV-------------PGFELVDY-- 164
Query: 188 RLANNLEDL-ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEV 246
N++E L L + P +AAFI EP+ G GVI P Y ++V + KKY++L I DE+
Sbjct: 165 ---NDVEALEKLLQDPN-VAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEI 220
Query: 247 ICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFS 306
GR G + D +KPD+V KALS PI A+L + +V VI
Sbjct: 221 QTGLGRTGKLLAHDHEGVKPDIVLLGKALSGGLYPISAVLANDDVMLVIKPG-------E 273
Query: 307 HGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA-FSDSPIIGEIRGTGL 365
HG TY G+P++CAVA+EAL++ KE + E ++ F+DG+K SP + EIRG GL
Sbjct: 274 HGSTYGGNPLACAVAVEALEVLKEEKLAENAQRLGEVFRDGLKELLKKSPWVKEIRGKGL 333
Query: 366 ILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDE 424
+ F + N W + +++G+L + + DNI+ +PP +++ E++D+
Sbjct: 334 LNAIVFDHSDGVN-----AWDLCLKL----KENGLLAKPTHDNIIRFAPPLVITKEQLDQ 384
Query: 425 LISKYGKALKATEERV 440
+ K LK+ +
Sbjct: 385 ALEIIKKVLKSFDSNK 400
|
Length = 400 |
| >gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 247 bits (633), Expect = 3e-77
Identities = 134/430 (31%), Positives = 230/430 (53%), Gaps = 42/430 (9%)
Query: 16 PLV-IEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP------FY 68
PL+ I + EG ++ D GK+YLD+++ W G + PR+ Q++ L F
Sbjct: 29 PLIPIRRGEGVWLEDFEGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVILAGFS 88
Query: 69 HSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKK 128
H +P ++L++ L+++ T +++ F+ ++GS A + +K+ ++Y G+P KK
Sbjct: 89 H-------EPVIELSERLVKI-TPPGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKK 140
Query: 129 KFIARQKSYHGSTLIAASLSGL--------PALHQKFDLPAPFVLHTDCPHYWRYAHPGE 180
+F+ SYHG TL A S+ + P L +P+P DC Y R G
Sbjct: 141 RFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSP-----DC--YLR--PEGM 191
Query: 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVI-GAGGVIPPPATYFEKVQAVVKKYDI 239
+ EE+S R+ ++E L E + IAA I EP+I GAGG+ Y + ++ +Y +
Sbjct: 192 SWEEHSRRMFAHMEQ-TLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGV 250
Query: 240 LFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQS 299
I DE+ FGR GTMF C++ I+PD + +KAL+ Y+P+ A+L + V + +
Sbjct: 251 HLIHDEIAVGFGRTGTMFACEQAGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDY 310
Query: 300 NTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGE 359
TL +F H +Y+G+P++CA A+ L I+++ N++E +A + + +D P + E
Sbjct: 311 PTLRAFLHSHSYTGNPLACAAALATLDIFEQDNVIENNRALARRMAEATAHLADHPHVAE 370
Query: 360 IRGTGLILGTEFADNKSPNEPFPPEW----GIGAYFGAQCEKHGMLVRVSGDNIMMSPPF 415
+R TG+IL E +K+ P+P W G+ Y A + G L+R G + PP+
Sbjct: 371 VRQTGMILAIEMVQDKASKTPYP--WQERRGLKVYQHAL--ERGALLRPLGSVVYFLPPY 426
Query: 416 IMSPEEVDEL 425
+++PE++D L
Sbjct: 427 VITPEQIDFL 436
|
Length = 466 |
| >gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 239 bits (613), Expect = 1e-74
Identities = 115/429 (26%), Positives = 211/429 (49%), Gaps = 40/429 (9%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP------FYH 69
P+ I ++EG+Y+Y +G++ +D+++ W G + P + A QL+ L F H
Sbjct: 25 PIPIVRAEGAYLYLADGRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDHVIFAGFTH 84
Query: 70 SFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 129
+P+ LA+ L+ + T + VFF++SGS A + +K+ Y G P + +
Sbjct: 85 -------EPAERLAQRLVAL-TPGGLDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSR 136
Query: 130 FIARQKSYHGSTLIAASLSGLPALHQKFD--LPAPFVLHTDCPHYWRYAHPGETEEEYST 187
F++ + YHG T+ S+ +H + L + P P E+
Sbjct: 137 FLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFE--QVTAPFP-------PDGYEQATLD 187
Query: 188 RLANNLEDLILKEGPETIAAFIAEPVI-GAGGVIPPPATYFEKVQAVVKKYDILFIADEV 246
L E L+ K E IAAFI EP++ GAGG++ Y +++ + ++ +L I DE+
Sbjct: 188 AL----EALLEKHAGE-IAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEI 242
Query: 247 ICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFS 306
FGR GT+F C++ + PD++ +K L+ Y+P+ A L + E+ E +S +F
Sbjct: 243 ATGFGRTGTLFACEQAGVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRA-KAFM 301
Query: 307 HGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLI 366
H +Y+ +P++CA A +L ++++ ++E+V ++ +G++ F D P + ++R G I
Sbjct: 302 HSPSYTANPLACAAANASLDLFEDEPVLERVAALSAGLAEGLEPFRDLPGVADVRVLGAI 361
Query: 367 LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELI 426
E P G A + G+L+R G+ I + PP+I++ EE+D +
Sbjct: 362 GAVELDR--------PVLERDGPALRAFALERGVLLRPLGNTIYLMPPYIITAEELDRIT 413
Query: 427 SKYGKALKA 435
+
Sbjct: 414 DAIVEVADE 422
|
Length = 423 |
| >gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 234 bits (600), Expect = 1e-72
Identities = 139/447 (31%), Positives = 221/447 (49%), Gaps = 59/447 (13%)
Query: 15 HP-LVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWN 73
HP L + K EG Y Y V+GK+YLD +G+ +G P++V A Q + L H
Sbjct: 24 HPNLPVVKGEGCYYYGVDGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKL--MHGPSG 81
Query: 74 RTTKPS-LDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIA 132
S L LA+EL E+ T + FF+NSG+EA + +KL + RP I+
Sbjct: 82 VIYYESILKLAEELAEI-TPGGLDCFFFSNSGAEAIEGALKLAKHVT---KRPY---IIS 134
Query: 133 RQKSYHGSTLIAASLSGLPALHQKFDLP-------APFVLHTDCPHYWRYAHPGETEEEY 185
+HG TL A S++ + ++K+ P AP+ CP GE E
Sbjct: 135 FTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPK-------GEDPEVC 187
Query: 186 STRLANNLEDLILKE-GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIAD 244
+LE L + PE +AA I EPV+G GG I PP ++ +K++ + ++ IL I D
Sbjct: 188 FLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFD 247
Query: 245 EVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGS 304
EV FGR G F + + PD+++ AK ++S +P+ A++ S E+ E LG
Sbjct: 248 EVQTGFGRTGEWFAAQTFGVVPDIMTIAKGIASG-LPLSAVVASKELMEQWP-----LG- 300
Query: 305 FSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGT 363
SHG T+ G+PV+CA A+ L++ KE +++ N++ + ++ + P+IG++RG
Sbjct: 301 -SHGTTFGGNPVACAAALATLEVIKEEKLLDNANEMGAYALERLEVLKEKHPVIGDVRGI 359
Query: 364 GLILGTEFAD-NKSPNEPFPPEWGIGAYFGAQCEK-------HGMLVR---VSGDNIMMS 412
GL++G E D + P+ G EK G+L +G+ + M
Sbjct: 360 GLMIGIEIVDPDGEPD-------------GDAVEKILDKCLEKGLLFYLCGNAGNVLRMI 406
Query: 413 PPFIMSPEEVDELISKYGKALKATEER 439
PP ++ EE+DE + +AL E +
Sbjct: 407 PPLTVTKEEIDEGLDILDEALTEYEAK 433
|
Length = 433 |
| >gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase | Back alignment and domain information |
|---|
Score = 223 bits (570), Expect = 1e-68
Identities = 136/432 (31%), Positives = 211/432 (48%), Gaps = 59/432 (13%)
Query: 15 HPL--VIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPF-YHSF 71
HPL V K+EG +V+DV GK+YLD L+ G P++V A T Q L +F
Sbjct: 17 HPLPVVFSKAEGVHVWDVEGKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLTLSSRAF 76
Query: 72 WNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV--WYYNNALGRP-NKK 128
+N A+ + ++F K V N+G+EA +T +KL W Y G P N+
Sbjct: 77 YNDVFGE---FAEYVTKLFGYDK---VLPMNTGAEAVETAIKLARKWGYK-VKGIPENQA 129
Query: 129 KFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188
++ + ++HG TL A S+S P F P+V PG + Y
Sbjct: 130 IIVSAKGNFHGRTLGAISMSTDPDSRTNF---GPYV-------------PGFKKIPY--- 170
Query: 189 LANNLEDL--ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEV 246
NNLE L L++ + AFI EP+ G GV+ P Y +KV+ + K+++L IADE+
Sbjct: 171 --NNLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEI 228
Query: 247 ICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFS 306
GR G + D ++KPD+V KALS P+ A+L +V I
Sbjct: 229 QTGLGRTGKLLCVDHENVKPDIVLLGKALSGGVYPVSAVLADDDVMLTIKPG-------E 281
Query: 307 HGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLI 366
HG TY G+P++CAVA+ AL++ +E + E K+ F+D +K PII E+RG GL+
Sbjct: 282 HGSTYGGNPLACAVAVAALEVLEEEKLAENAEKLGEIFRDQLKKLP-KPIITEVRGRGLL 340
Query: 367 LGTEFADNKSPNEPFPPEWGIGAYFGAQCEK---HGMLVRVSGDNIM-MSPPFIMSPEEV 422
++K+ W + C K G+L + + NI+ ++PP +++ E++
Sbjct: 341 NAIVIDESKTGRTA----WDL-------CLKLKEKGLLAKPTHGNIIRLAPPLVITEEQL 389
Query: 423 DELISKYGKALK 434
DE + K +
Sbjct: 390 DEGLEIIKKVID 401
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis (OMNI|PG1271), and the other from Staphylococcus aureus (OMNI|SA0170). After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis (SP|P38021). Length = 401 |
| >gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 220 bits (562), Expect = 2e-67
Identities = 128/424 (30%), Positives = 195/424 (45%), Gaps = 53/424 (12%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
PL + + EG+ V+DV+GK+YLD L G+ ALG + P +V A T QL TL + +
Sbjct: 26 PLALVRGEGAVVWDVDGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGHVSNLF--A 83
Query: 76 TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQK 135
T+P + LA+ L+E+ A + +VFF NSG+EAN+ KL GR K +A +
Sbjct: 84 TEPQIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLA----RLTGRT---KIVAAEG 136
Query: 136 SYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLED 195
+HG T+ A +L+G PA F P G Y A L
Sbjct: 137 GFHGRTMGALALTGQPAKRAPF---EPLP-------------GGVEHVPYGDVDA--LAA 178
Query: 196 LILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT 255
+ + AA EP+ G GV+PPPA Y + + ++ L + DEV GR G
Sbjct: 179 AV----DDDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGA 234
Query: 256 MFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHP 315
F + PD+V+ AK L +PIGA L +++ L HG T+ G+P
Sbjct: 235 WFAHQHDGVTPDVVTLAKGLGGG-LPIGACLAFGPAADL-------LTPGLHGSTFGGNP 286
Query: 316 VSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNK 375
V+CA A+ L ++E ++ + + G++A P++ +RG GL+LG
Sbjct: 287 VACAAALAVLDTIASEGLLENAERLGEQLRAGIEAL-GHPLVDHVRGRGLLLGIVL---- 341
Query: 376 SPNEPFPPEWGIGAYFGAQCEKHGMLVR-VSGDNIMMSPPFIMSPEEVDELISKYGKALK 434
P A + G LV V+ D I ++PP I++ +VD ++ L
Sbjct: 342 --TAPVAKA------VEAAAREAGFLVNAVAPDVIRLAPPLIITDAQVDAFVAALPAILD 393
Query: 435 ATEE 438
A
Sbjct: 394 AAAA 397
|
Length = 398 |
| >gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 212 bits (542), Expect = 1e-64
Identities = 115/427 (26%), Positives = 194/427 (45%), Gaps = 59/427 (13%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFW--- 72
L E+ EG ++ D +G++YLD +G+ +LG + P LV A Q L W
Sbjct: 14 DLAFERGEGVWLIDEDGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKL------WHVS 67
Query: 73 NRTTKPSLDLAKELLEMFTASKMA-KVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFI 131
N P + L E + A KVFFTNSG+EA + +K Y+ G P + + I
Sbjct: 68 NLYRIPE---QERLAERLVENSFADKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRII 124
Query: 132 ARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191
+ ++HG TL + G + F P V PG + +
Sbjct: 125 TFEGAFHGRTLATIAAGGQEKYLEGF---GPLV-------------PGFDQVPF-----G 163
Query: 192 NLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG 251
++E L P T AA + EP+ G GG+ P P + + ++ + + +L I DEV C G
Sbjct: 164 DIEALKAAITPNT-AAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMG 222
Query: 252 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTY 311
R G +F + + PD+++ AK + + P+GA L + E ++ + T G +HG TY
Sbjct: 223 RTGKLFAHEWAGVTPDIMAVAKGIGGGF-PLGACLATEEAAKGM-----TPG--THGSTY 274
Query: 312 SGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD--SPIIGEIRGTGLILGT 369
G+P++ AV L + ++ V ++ + ++ D +I E+RG GL+LG
Sbjct: 275 GGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEGLVDRFPDVIEEVRGKGLLLGL 334
Query: 370 EFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELISK 428
+ G+L +GDN++ + PP I++ EE+DE + +
Sbjct: 335 KCVVPNRD-------------LVQALRDEGLLTVGAGDNVVRLLPPLIITEEEIDEALER 381
Query: 429 YGKALKA 435
+A ++
Sbjct: 382 LERAAES 388
|
Length = 389 |
| >gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 209 bits (532), Expect = 2e-62
Identities = 115/437 (26%), Positives = 219/437 (50%), Gaps = 28/437 (6%)
Query: 4 PFTAGWQSTDVHPLV-IEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQL 62
P T + PLV I + EG+++ +G++YLD+++ W G +EPR+ AA AQ
Sbjct: 34 PCTQMREHPHTLPLVPIARGEGAWLVGHDGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQA 93
Query: 63 NTLP------FYHSFWNRTTKPSLDLAKELLEMFTA----SKMAKVFFTNSGSEANDTQV 112
L F H P++ LA++LL + + ++KVF+ ++GS + +
Sbjct: 94 GELEQVMLAGFTHE-------PAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVAL 146
Query: 113 KLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH---TDC 169
K+ ++Y + G + +FIA + YHG T+ A ++ +P + + AP +L
Sbjct: 147 KMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVY---APLLLESLFAPS 203
Query: 170 PHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIG-AGGVIPPPATYFE 228
P + A PG++ E+Y+ + A+ L+ L ++ P I A I EP + AGG+ Y
Sbjct: 204 PDAY-LAEPGQSAEDYALQAADALQAL-FEQSPGEICALILEPRLQCAGGMRMHHPAYLR 261
Query: 229 KVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVS 288
+ + + + IADE+ FGR GT+F C++ + PDL+ +K L+ ++P+ A+L +
Sbjct: 262 RARELCDAHGAFLIADEIATGFGRTGTLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLAT 321
Query: 289 PEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGV 348
++ + S +F H +Y+G+P++CA A+ L I+ + +++ + A +
Sbjct: 322 QQLYDAFLDDSRER-AFLHSHSYTGNPLACAAALATLDIFADDDVIARNQPTAARMTQLA 380
Query: 349 KAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN 408
+ P + ++R G+++ E + PFPP +G + G+++R GD
Sbjct: 381 AQIGEHPHVADVRQAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAALARGVVLRPLGDV 440
Query: 409 IMMSPPFIMSPEEVDEL 425
+ PP+ + ++ L
Sbjct: 441 LYWMPPYCVDEAQLALL 457
|
Length = 472 |
| >gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 205 bits (522), Expect = 4e-61
Identities = 120/432 (27%), Positives = 213/432 (49%), Gaps = 35/432 (8%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
PLV K+E + V+D+ G +Y+D L+ +G + PR+V A Q + L Y +
Sbjct: 24 PLVPVKAENAKVWDIEGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIHY-TPIYGF 82
Query: 76 TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQK 135
L LA++L+E+ KV F SGS+AND +K Y ++K ++ +
Sbjct: 83 PVEPLLLAEKLIEI-APGDNPKVSFGLSGSDANDGAIKFARAYTK------RRKILSYLR 135
Query: 136 SYHGSTLIAASLSGLPALHQKFDL-PAPFVLHTDCPHYWRY---AHPGETEEEYSTRLAN 191
SY+GST A SL+GL + + V + P +R PG + E +
Sbjct: 136 SYYGSTYGAMSLTGL-DFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKE 194
Query: 192 NLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG 251
E + EG +AA AEP+ G G+I PP YF+K++ ++ ++ IL + DEV G
Sbjct: 195 KFEGEVYAEG---VAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLG 251
Query: 252 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTY 311
R G F + + ++PD+++ K L +PI A + E+ + +L +H FT
Sbjct: 252 RTGKWFAIEHFGVEPDIITLGKPLGGG-LPISATIGRAEIMD-------SLPPLAHAFTL 303
Query: 312 SGHPVSCAVAIEALKIYKERNIVEQVNKIA----PKFQDGVKAFSDSPIIGEIRGTGLIL 367
SG+PV+ A A+ ++ +E+N++++ K+ + ++ K +IG++RG GL++
Sbjct: 304 SGNPVASAAALAVIEEIEEKNLLKRAEKLGNYTKKRLEEMKKKH---ELIGDVRGIGLMI 360
Query: 368 GTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR-VSGDNIMMSPPFIMSPEEVDELI 426
G + ++ E E + + + G++V SG+ + + PP + E +DE +
Sbjct: 361 GVDLVKDRETKERAYEEAAKVVW---RAWELGLIVTFFSGNVLRIQPPLTIEKEVLDEGL 417
Query: 427 SKYGKALKATEE 438
+A++ EE
Sbjct: 418 DILEEAIEDVEE 429
|
Length = 443 |
| >gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 203 bits (518), Expect = 2e-60
Identities = 122/428 (28%), Positives = 196/428 (45%), Gaps = 53/428 (12%)
Query: 25 SYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLD--- 81
+ + D G++++D L G +G P +V+A QL P + ++ LD
Sbjct: 74 NTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLH-------SQELLDPLR 126
Query: 82 --LAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHG 139
LAK L + T K+ FF NSG+E+ + +KL Y + G K FIA ++HG
Sbjct: 127 AMLAKTLAAL-TPGKLKYSFFCNSGTESVEAALKLAKAYQSPRG---KFTFIATSGAFHG 182
Query: 140 STLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILK 199
+L A S + + F P H P E T L+ K
Sbjct: 183 KSLGALSATAKSTFRKPFMPLLPGFRHV----------PFGNIEAMRTALSE------CK 226
Query: 200 EGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGC 259
+ + +AA I EP+ G GGVI PP Y V+ + ++ L I DEV GR G MF C
Sbjct: 227 KTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFAC 286
Query: 260 DKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCA 319
+ +++PD++ AKAL MPIGA + + EV V+ F H T+ G+P++CA
Sbjct: 287 EHENVQPDILCLAKALGGGVMPIGATIATEEVFSVL-----FDNPFLHTTTFGGNPLACA 341
Query: 320 VAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNKSP 377
A+ + + E+N+ Q + DG + + ++ E RG G+++ EF DN+
Sbjct: 342 AALATINVLLEQNLPAQAEQKGDYLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE-- 399
Query: 378 NEPFPPEWGIGAYFGAQCEKHGMLVR---VSGDNIMMSPPFIMSPEEVDELISKYGKALK 434
IG F ++ + +LV + I + PP ++ E+ ++++ KAL
Sbjct: 400 ---------IGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCEQVLKAARKALA 450
Query: 435 ATEERVKE 442
A V+E
Sbjct: 451 AMRVSVEE 458
|
Length = 459 |
| >gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 199 bits (508), Expect = 9e-60
Identities = 121/421 (28%), Positives = 199/421 (47%), Gaps = 58/421 (13%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
P+ I K +G+ V D NGK YLD +G+ LG P + A QL+ W+ +
Sbjct: 12 PIDIVKGKGTKVTDNNGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLD------DIWHVS 65
Query: 76 TKPSLDLAKELLEMFTA-SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 134
+ L +E+ + S VFF NSG+EAN+ +KL + K K + +
Sbjct: 66 NLFTNSLQEEVASLLAENSAGDLVFFCNSGAEANEAALKLARKHT------GKSKIVTFE 119
Query: 135 KSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLE 194
+S+HG T S +G + + F P + PG T + N+++
Sbjct: 120 QSFHGRTFGTMSATGQEKIKEGF---GPLL-------------PGFTHVPF-----NDIK 158
Query: 195 DLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLG 254
L + E +AA + E V G GGVIP + ++VQ + KK+ L I DEV GR G
Sbjct: 159 AL-KEVMNEEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTG 217
Query: 255 TMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGH 314
T+F +++ + PD+V+ AK L + +P+GA++ E+ G SHG T+ G+
Sbjct: 218 TLFAYEQFGLDPDIVTVAKGLGNG-IPVGAMIGKKELGT-------AFGPGSHGSTFGGN 269
Query: 315 PVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVK-AFSDSPIIGEIRGTGLILGTEFAD 373
P++ A A E L++ K+ + +E+V + F ++ + IRG GL++G E +
Sbjct: 270 PLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQKLQEELEHLECVKNIRGKGLMIGIECTE 329
Query: 374 NKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN-IMMSPPFIMSPEEVDELISKYGKA 432
+P Q + G+LV +G N I + PP +++ EE+D+ + K
Sbjct: 330 EVAP-------------VIEQLREEGLLVLSAGPNVIRLLPPLVVTKEELDQAVYLLKKV 376
Query: 433 L 433
L
Sbjct: 377 L 377
|
Length = 377 |
| >gnl|CDD|179933 PRK05093, argD, bifunctional N-succinyldiaminopimelate- aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Score = 197 bits (503), Expect = 9e-59
Identities = 130/423 (30%), Positives = 204/423 (48%), Gaps = 52/423 (12%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
+ + EGS V+D GK+Y+D G+ TALG P LV A Q L +H T
Sbjct: 23 EFIPVRGEGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVKALKEQGEKL--WHISNVFT 80
Query: 76 TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGR--PNKKKFIAR 133
+P+L LAK+L++ A + VFF NSG+EAN+ KL Y A R P K + IA
Sbjct: 81 NEPALRLAKKLIDATFAER---VFFANSGAEANEAAFKLARRY--ACDRHGPEKTEIIAF 135
Query: 134 QKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNL 193
S+HG TL S+ G P F P P T + N+L
Sbjct: 136 HNSFHGRTLFTVSVGGQPKYSDGFG-PKP---------------ADITHVPF-----NDL 174
Query: 194 EDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRL 253
+ T A + EP+ G GGVIP + + ++ + +++ L I DEV GR
Sbjct: 175 AAVKAVIDDHT-CAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRT 233
Query: 254 GTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSG 313
G +F Y + PD+++ AKAL + PIGA+L + E++ +G +HG TY G
Sbjct: 234 GDLFAYMHYGVTPDILTSAKALGGGF-PIGAMLTTAEIASHFK-----VG--THGSTYGG 285
Query: 314 HPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEFA 372
+P++CAVA I ++E V +F DG++ + + EIRG GL++G E
Sbjct: 286 NPLACAVAEAVFDIINTPEVLEGVKARRQRFVDGLQKINQKYGVFSEIRGMGLLIGAELK 345
Query: 373 DNKSPNEPFPPEW-GIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELISKYG 430
P++ G F + G++V V+G +++ +P ++ ++DE ++++
Sbjct: 346 ----------PQYKGRARDFLNAAAEEGVMVLVAGPDVLRFAPSLVIEEADIDEGLARFE 395
Query: 431 KAL 433
KA+
Sbjct: 396 KAV 398
|
Length = 403 |
| >gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family | Back alignment and domain information |
|---|
Score = 193 bits (492), Expect = 3e-57
Identities = 124/421 (29%), Positives = 206/421 (48%), Gaps = 48/421 (11%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
P + + EGS V+D GK+Y+D G+ ALG + P LV A Q + L +H T
Sbjct: 18 PFIPVRGEGSRVWDQQGKEYIDFAGGIAVNALGHAHPELVKALIEQADKL--WHIGNGYT 75
Query: 76 TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQK 135
+P L LAK+L++ A K VFF NSG+EAN+ +KL Y +K + +A +
Sbjct: 76 NEPVLRLAKKLVDATFADK---VFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKN 132
Query: 136 SYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLED 195
S+HG TL S+ G P Q F P P G Y N+L
Sbjct: 133 SFHGRTLFTVSVGGQPKYSQGFA-PLP---------------GGIKHAPY-----NDLAA 171
Query: 196 LILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT 255
+T A I EP+ G GGV+P + + ++ + +++ L I DEV GR G
Sbjct: 172 AKALISDKT-CAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGE 230
Query: 256 MFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHP 315
++ Y + PD+++ AKAL + PIGA+L + E++ + +G +HG TY G+P
Sbjct: 231 LYAYMHYGVTPDILTSAKALGGGF-PIGAMLTTTEIAAHL-----KVG--THGTTYGGNP 282
Query: 316 VSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEFADN 374
++CAVA + L + ++ V + F DG++ + + EIRG GL++G
Sbjct: 283 LACAVAGKVLDLVNTPELLAGVKQRHDLFVDGLEKINARYNVFSEIRGKGLLIGAVLT-- 340
Query: 375 KSPNEPFPPEW-GIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELISKYGKA 432
+ G F + G++ ++G N++ +P ++S +++DE ++++ +A
Sbjct: 341 --------EAYQGKAKQFVNAAAEEGVIALIAGPNVVRFAPSLVISDDDIDEGLARFERA 392
Query: 433 L 433
+
Sbjct: 393 I 393
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason [Energy metabolism, Amino acids and amines]. Length = 397 |
| >gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 192 bits (491), Expect = 2e-56
Identities = 121/443 (27%), Positives = 212/443 (47%), Gaps = 42/443 (9%)
Query: 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTL----P--FY 68
+PLVI+ G+ + DV+GK Y+D LA +G + PR+V A AQ + P Y
Sbjct: 24 YPLVIDHGYGATLTDVDGKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFIHYTPAYMY 83
Query: 69 HSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKK 128
H P + LAK+L E+ +V F SGS+AND +K Y GRP
Sbjct: 84 HE-------PLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAYT---GRPY-- 131
Query: 129 KFIARQKSYHGSTLIAASLSGLPA-LHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187
I+ +YHGST + S+SG+ + +K+ P +H P +R E + +
Sbjct: 132 -IISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGM-YEEPDANFVE 189
Query: 188 RLANNLEDLILKEGP-ETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEV 246
L+++ K P + +A + E + G GG++ P YFE + +++ ILF D++
Sbjct: 190 EYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDI 249
Query: 247 ICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFS 306
GR G ++I PDL+SF K+L+ MP+ AI+ E+ E +L + +
Sbjct: 250 QQGLGRTGKWSSISHFNITPDLMSFGKSLAGG-MPMSAIVGRKEIME-------SLEAPA 301
Query: 307 HGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGL 365
H FT +PVSCA A+ + + ++ +++++ + + + S +G++RG GL
Sbjct: 302 HLFTTGANPVSCAAALATIDMIEDESLLQRSAEKGEYARKRFDQWVSKYNFVGDVRGYGL 361
Query: 366 ILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHG-MLVRVSGDNIMMSPPFIMSPEEVDE 424
+G + +K + C +HG +++ V+G+ + PP +++ E++D
Sbjct: 362 SIGIDIVSDKKLKTRDNEAALKICNY---CFEHGVVIIAVAGNVLRFQPPLVITYEQLD- 417
Query: 425 LISKYGKALKATEERVKELKSQQ 447
AL E+ L++ +
Sbjct: 418 ------TALNTIEQAFTALEAGK 434
|
Length = 445 |
| >gnl|CDD|235894 PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 189 bits (481), Expect = 4e-55
Identities = 109/426 (25%), Positives = 202/426 (47%), Gaps = 20/426 (4%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
L + + EG+++YD +G++YLD+++ W G + PR+ AA QL+TL H+
Sbjct: 37 LLPVARGEGAWLYDRDGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLE--HAMLAGC 94
Query: 76 T-KPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 134
T +P+++LA E L T + FF + G+ A + +K+ ++ GR +K++F+
Sbjct: 95 THEPAIELA-ERLAALTGGTLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLA 153
Query: 135 KSYHGSTLIAASLSGLPALHQKFD---LPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191
YHG T+ A ++ + +D A V D R A PGET + + R
Sbjct: 154 NGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDA----RGARPGETAADVAARALA 209
Query: 192 NLEDLILKEGPETIAAFIAEP-VIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250
++ L E IAA I EP V A G+ +Y ++A+ +Y + IADE+
Sbjct: 210 DVRRL-FAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGC 268
Query: 251 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFT 310
GR GT F C++ + PD + +K +S Y+P+ +L + + + F H +
Sbjct: 269 GRTGTFFACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYD-DDVTRGFLHSHS 327
Query: 311 YSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTE 370
Y+G+P++C A+ L ++ E +++ + + + + + + + P + +R G I +
Sbjct: 328 YTGNPLACRAALATLDLFAEDDVLARNARKSARLRAALAPLAAHPQVRHLRQRGTIFAFD 387
Query: 371 FADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYG 430
A + F F + +L+R G + + PP+++ +E+ L +
Sbjct: 388 VALDGDAARTFS------RRFFEAALERELLLRPIGTTVYLMPPYVLDDDEIAWLAERTR 441
Query: 431 KALKAT 436
L AT
Sbjct: 442 ATLDAT 447
|
Length = 453 |
| >gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 1e-54
Identities = 116/440 (26%), Positives = 205/440 (46%), Gaps = 54/440 (12%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY-HSFWNR 74
P+V +++GS ++D GKKYLD L+ G P+++ A T Q L +F+N
Sbjct: 58 PVVFSRAKGSRIWDPEGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLTLSSRAFYND 117
Query: 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV--WYYNNALGRPNKKKFIA 132
+ A+ L MF + + N+G+E +T +KL W Y N+ ++
Sbjct: 118 KFP---EFAEYLTSMFGYDMVLPM---NTGAEGVETAIKLARKWGYEKKGIPKNEAIIVS 171
Query: 133 RQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 192
+HG TL A S+S + F P + PG + ++ +
Sbjct: 172 CCGCFHGRTLAAISMSCDNEATRGF---GPLL-------------PGHLKVDF-----GD 210
Query: 193 LEDL--ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250
L+ L I +E + IAAF+ EP+ G GV+ PP Y + V+ + K+++L IADE+
Sbjct: 211 LDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGL 270
Query: 251 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFT 310
R G M CD ++PD+V KAL +P+ A+L +V + HG T
Sbjct: 271 ARTGKMLACDWEEVRPDVVILGKALGGGVIPVSAVLADKDVML-------CIKPGEHGST 323
Query: 311 YSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD--SPIIGEIRGTGLILG 368
+ G+P++ AVA+ AL++ ++ + E+ K+ + +D ++ +I E+RG GL+
Sbjct: 324 FGGNPLASAVAMAALQVVQDEKLAERSAKLGQELRDQLQKIQKQFPKLIKEVRGRGLLNA 383
Query: 369 TEFADNKSPNEPFPPEWGIGAY-FGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELI 426
++ + AY + ++ G+L + + D I+ ++PP +S +E+ E
Sbjct: 384 VVL-NSPKLG-------PVSAYDVCLKLKERGLLAKPTHDTIIRLAPPLSISEDELQECS 435
Query: 427 SKYGKALKATEERVKELKSQ 446
L E + +L+S
Sbjct: 436 KALSDVL---EHDLPKLQSA 452
|
Length = 474 |
| >gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 186 bits (473), Expect = 2e-54
Identities = 132/424 (31%), Positives = 216/424 (50%), Gaps = 49/424 (11%)
Query: 17 LVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTT 76
+V+E+ +GS V+D G++YLD AG+ LG ++P LVAA T Q L +H+ +
Sbjct: 24 VVLERGQGSRVWDDQGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKL--WHTSNVFYS 81
Query: 77 KPSLDLAKELLEMFTASKMA-KVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIAR-Q 134
P L LA+EL+ AS+ A KVF NSG+EAN+ +KLV + ++ GRP K+ I +
Sbjct: 82 APPLKLAEELVT---ASRFAEKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFR 138
Query: 135 KSYHGSTLIAASLSGLPALHQKFD-LPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNL 193
S+HG TL A + + P + ++ LP F RY N++
Sbjct: 139 GSFHGRTLAAVTATAQPKYQEGYEPLPGGF----------RYVD------------FNDV 176
Query: 194 EDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRL 253
E L +AA + EP+ G GGV+P + +V+A+ ++D L + DE+ C GR
Sbjct: 177 EALEAAMAGGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRT 236
Query: 254 GTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSG 313
GT+F + + PD+V+ AKAL + PIGA+L P+V+E + G +HG T+ G
Sbjct: 237 GTLFAHWQEQVTPDIVTLAKALGGGF-PIGAMLAGPKVAETMQ-----FG--AHGTTFGG 288
Query: 314 HPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEFA 372
+P++ AVA AL+ I V + + + G++A + + ++RG GL+LG A
Sbjct: 289 NPLAAAVARVALRKLASPQIAANVARQSAALRAGLEALNAEFGVFAQVRGRGLMLGAVLA 348
Query: 373 DNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELISKYGK 431
P G +HG+L+ +G +++ P ++ E+ + +++
Sbjct: 349 ---------PAHAGQAGAILDLAAEHGLLLLQAGPDVLRFVPALNLTDAELADGLARLRL 399
Query: 432 ALKA 435
AL
Sbjct: 400 ALAD 403
|
Length = 408 |
| >gnl|CDD|180174 PRK05630, PRK05630, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 186 bits (473), Expect = 3e-54
Identities = 124/438 (28%), Positives = 214/438 (48%), Gaps = 44/438 (10%)
Query: 9 WQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY 68
+ + V ++ ++G ++ +G +D+++ W A G PRL AAA Q++T+ +
Sbjct: 16 YAAPGVRNRLVTSTDGVFLTLEDGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMS-H 74
Query: 69 HSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKK 128
F T +P++ L ++LL + T + + VF+++SGS + + +K+ Y+ G P +
Sbjct: 75 VMFGGLTHEPAIKLTRKLLNL-TDNGLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERT 133
Query: 129 KFIARQKSYHGSTLIAASL----SGLPAL------HQKFDLPAPFVLHTDCPHYWRYAHP 178
+ + + YHG T A S+ G+ +L Q F PAP V R + P
Sbjct: 134 RLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIF-APAPPV---------RGSSP 183
Query: 179 GETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVI-GAGGVIPPPATYFEKVQAVVKKY 237
E +LE LI ET+AA I EP++ GAGG+ E V+ + K+
Sbjct: 184 QEIS-----EYLRSLELLI----DETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKH 234
Query: 238 DILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHS 297
DIL IADE+ FGR G +F + PD++ KAL+ +M A L + +V+++I S
Sbjct: 235 DILLIADEIATGFGRTGELFATLAAGVTPDIMCVGKALTGGFMSFAATLCTDKVAQLI-S 293
Query: 298 QSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPII 357
N G+ HG T+ +P++CAVA +L+I + +QV +I + G+ + P +
Sbjct: 294 TPNGGGALMHGPTFMANPLACAVAHASLEIIETGMWRKQVKRIEAELIAGLSPLAHLPGV 353
Query: 358 GEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIM 417
++R G I E +P E A HG+ +R G + + PP+I
Sbjct: 354 ADVRVLGAIGVVEME------QPVDMEEATQAAV-----DHGVWLRPFGRLVYVMPPYIT 402
Query: 418 SPEEVDELISKYGKALKA 435
+ E++ ++ + A+KA
Sbjct: 403 TSEQIAQICAALAAAVKA 420
|
Length = 422 |
| >gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Score = 181 bits (460), Expect = 2e-52
Identities = 125/432 (28%), Positives = 202/432 (46%), Gaps = 67/432 (15%)
Query: 15 HPL--VIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY-HSF 71
HPL VI ++EG +V D G +Y+D L+ G P+++ A Q + + +F
Sbjct: 20 HPLPIVISEAEGVWVKDPEGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLTSRAF 79
Query: 72 WNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV--WYYNNALGRPNKKK 129
+ P + +L + V N+G+EA +T +K W Y+ PNK +
Sbjct: 80 HSDQLGPWYEKVAKL------TGKDMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAE 133
Query: 130 FIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189
IA + ++HG T+ A SLS + F P + PG + Y
Sbjct: 134 IIACEGNFHGRTMAAVSLSSEEEYKRGF---GPML-------------PGIKKIPYG--- 174
Query: 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA 249
+LE L P T AAF+ EP+ G G+ PP + + + + K+ ++LFIADE+
Sbjct: 175 --DLEALKAAITPNT-AAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTG 231
Query: 250 FGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSF---S 306
GR G +F CD ++ PD+ KAL PI + + ++ LG F S
Sbjct: 232 LGRTGKLFACDWDNVTPDMYILGKALGGGVFPISCVAANRDI----------LGVFTPGS 281
Query: 307 HGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLI 366
HG T+ G+P++CAV+I AL++ +E + E+ ++ F++ +K D+P+I E+RG GL
Sbjct: 282 HGSTFGGNPLACAVSIAALEVLEEEKLPERSLELGEYFKEQLKEI-DNPMIKEVRGRGLF 340
Query: 367 LGTEFADNKSPNEPFPPEWGIGAYFGAQCEK---HGMLVRVSGDN-IMMSPPFIMSPEEV 422
+G E NEP P CE G+L + + + I +PP +++ EE+
Sbjct: 341 IGVEL------NEPARP----------YCEALKEEGLLCKETHETVIRFAPPLVITKEEL 384
Query: 423 DELISKYGKALK 434
D K L
Sbjct: 385 DWAFEKIKAVLS 396
|
Length = 396 |
| >gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Score = 178 bits (454), Expect = 2e-51
Identities = 129/435 (29%), Positives = 210/435 (48%), Gaps = 74/435 (17%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
P + + EGS ++D GK+Y+D G+ ALG + P L A Q + F+H+ T
Sbjct: 22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQASK--FWHTGNGYT 79
Query: 76 TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQK 135
+P L LAK+L++ A+ +VFF NSG+EAN+ +KL Y + +K +A +
Sbjct: 80 NEPVLRLAKKLID---ATFADRVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKN 136
Query: 136 SYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLE- 194
++HG TL S G P Q F P P P Y N+L
Sbjct: 137 AFHGRTLFTVSAGGQPKYSQDF-APLP---------------PDIRHAAY-----NDLNS 175
Query: 195 --DLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252
LI + A I EP+ G GGVIP + + ++ + +++ L I DEV GR
Sbjct: 176 ASALI----DDQTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGR 231
Query: 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS 312
G ++ Y + PD+++ AKAL + PIGA+L + + + V+ T+G +HG TY
Sbjct: 232 TGELYAYMHYGVTPDVLTTAKALGGGF-PIGAMLTTEKCASVM-----TVG--THGTTYG 283
Query: 313 GHPVSCAVAIEALKI---------YKERN--IVEQVNKIAPKFQDGVKAFSDSPIIGEIR 361
G+P++ AVA + L++ K+R+ VE++N I ++ FS EIR
Sbjct: 284 GNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINARYG----LFS------EIR 333
Query: 362 GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQ-CEKHGMLVRVSGDNIM-MSPPFIMSP 419
G GL++G E+ A +Q K G++V ++G N++ +P +S
Sbjct: 334 GLGLLIGCVLN----------AEYAGKAKQISQEAAKAGVMVLIAGPNVVRFAPALNISE 383
Query: 420 EEVDELISKYGKALK 434
EE+ + ++ +A +
Sbjct: 384 EEITTGLDRFARACE 398
|
Length = 406 |
| >gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase | Back alignment and domain information |
|---|
Score = 176 bits (447), Expect = 8e-51
Identities = 124/434 (28%), Positives = 191/434 (44%), Gaps = 71/434 (16%)
Query: 19 IEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP----FYHSFWNR 74
+G +YDV GK+YLD AG+ ALG +P V A Q TL YH
Sbjct: 1 FVSGKGCKLYDVEGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAHVSNVYH----- 55
Query: 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK----- 129
T P ++LAK L+ A + VFF NSG+EAN+ +K Y K
Sbjct: 56 -TIPQVELAKRLVASSFADR---VFFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSA 111
Query: 130 --FIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187
F++ S+HG TL A +L+ F P + PG T EY
Sbjct: 112 TEFVSFSNSFHGRTLGALALTSKEQYRTPF---EPLM-------------PGVTFVEY-- 153
Query: 188 RLANNLE---DLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIAD 244
NLE LI K AA EPV G GG+ P + + ++A+ + L + D
Sbjct: 154 ---GNLEAARKLIQKG---KTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFD 207
Query: 245 EVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGS 304
EV C GR G ++ + Y ++PD+++ AK L+ +PIGA+LV+ +V+ I+
Sbjct: 208 EVQCGLGRTGYLWAHEAYGVEPDIMTLAKPLAGG-LPIGAVLVTEKVASAINPG------ 260
Query: 305 FSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVK-AFSDSPIIGEIRGT 363
HG T++G P+ C A+ L + + V K ++ ++ +P + E+RG
Sbjct: 261 -DHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYLRELLRRKLGGNPHVKEVRGV 319
Query: 364 GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS--GDNIMMSPPFIMSPEE 421
GL++G + P C G+LV + GD + + PP ++S E
Sbjct: 320 GLLVGIQLDVPAGP-------------LVDACRDSGLLVLTAGKGDVVRLVPPLVISEAE 366
Query: 422 VDELISKYGKALKA 435
+++ + L A
Sbjct: 367 LEQAVEILADCLPA 380
|
Length = 382 |
| >gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Score = 175 bits (446), Expect = 2e-50
Identities = 113/426 (26%), Positives = 190/426 (44%), Gaps = 27/426 (6%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
P+ ++EG+ + DV+G + +D +G+ +G S PR+V A Q+ F H+ + T
Sbjct: 16 PVFAARAEGAILEDVDGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAE--FTHTCFMVT 73
Query: 76 TKPS-LDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 134
+ LA++L + S K F NSG+EA + VK+ Y GRP +A
Sbjct: 74 PYEGYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIARSYT---GRPG---VVAFD 127
Query: 135 KSYHGSTLIAASLSGLPALHQ-KFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNL 193
+HG T + +L+ ++ F AP V P+ +R + + LA
Sbjct: 128 HGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYR-DGLLDKQLSTDGELAAAR 186
Query: 194 EDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRL 253
++ G +AA + EPV G GG I P + + +++ I+FIADEV F R
Sbjct: 187 AIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFART 246
Query: 254 GTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSG 313
G MF C+ +PDL++ AK+L+ +P+ + E+ + G G TY+G
Sbjct: 247 GAMFACEHEGPEPDLITTAKSLADG-LPLSGVTGRAEIMDAPAP-----GGL--GGTYAG 298
Query: 314 HPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEFA 372
+P++CA A+ L I + ++E+ +I D + P IG++RG G ++ E
Sbjct: 299 NPLACAAALAVLAIIESEGLIERARQIGRLVTDRLTTLKAVDPRIGDVRGLGAMIAVELV 358
Query: 373 DNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN---IMMSPPFIMSPEEVDELISKY 429
D + P+ G+ G+L+ G I PP + E + E +
Sbjct: 359 DPGTTE----PDAGLAERIATAAHAAGLLLLTCGMFGNIIRFLPPLTIGDELLSEGLDIL 414
Query: 430 GKALKA 435
L
Sbjct: 415 CAILAD 420
|
This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. The degree of sequence difference between this set and known eukaryotic (mitochondrial) examples is greater than the distance to some proteins known to have different functions, and so separate models are built for prokaryotic and eukaryotic sets. E. coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 420 |
| >gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 175 bits (446), Expect = 5e-50
Identities = 112/420 (26%), Positives = 197/420 (46%), Gaps = 27/420 (6%)
Query: 18 VIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTK 77
V+ +EG Y+ DV+GKKY+D G LG P ++ Q+ LPF S T +
Sbjct: 57 VLASAEGIYIEDVDGKKYMD-FHGNNVHQLGYGHPHVIEKVKEQMAKLPF--SPRRFTNE 113
Query: 78 PSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSY 137
+++ A++L E+ ++ +V F G+ A +KL + K ++ S+
Sbjct: 114 TAIECAEKLTEI-AGGELNRVLFAPGGTSAIGMALKLARHITG------NFKVVSLWDSF 166
Query: 138 HGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLI 197
HG++L A S+ G Q V P Y + A+ LE +I
Sbjct: 167 HGASLDAISVGGEACFRQGMGPLMAGVERI--PPAVSYRGAFPDADGSDVHYADYLEYVI 224
Query: 198 LKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF 257
KEG I AFIAE V +P A Y+++V+ + K+++L I DE+ GR G F
Sbjct: 225 EKEG--GIGAFIAEAVRNTDVQVPSKA-YWKRVREICDKHNVLLIIDEIPNGMGRTGEWF 281
Query: 258 GCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVS 317
Y I+PD++ K L +PI A++ + + + +LG ++H P+
Sbjct: 282 THQAYGIEPDILCIGKGLGGGLVPIAAMITKDKYNT---AAQISLGHYTH----EKSPLG 334
Query: 318 CAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEFADNKS 376
CA A+ +++ ++ ++E+V + ++ + P+IG++RG GL+ G E ++
Sbjct: 335 CAAALATIEVIEQEGLLEKVKADSQFMRERLLEMKAKYPLIGDVRGIGLLWGVELVTDRH 394
Query: 377 PNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN-IMMSPPFIMSPEEVDELISKYGKALKA 435
E E Y +C +G+ +VS N I +SPP I++ EE+ + ++ +A+
Sbjct: 395 TKERAYDEAEAVLY---RCLNNGLSFKVSQGNVIQLSPPLIITREELTQALAILEEAIAK 451
|
Length = 459 |
| >gnl|CDD|180441 PRK06173, PRK06173, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 174 bits (442), Expect = 1e-49
Identities = 128/444 (28%), Positives = 219/444 (49%), Gaps = 49/444 (11%)
Query: 4 PFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLN 63
P+++ V+P +E+++G + +G++ +D ++ W G + PRL AAAT QL
Sbjct: 17 PYSSVTDPIPVYP--VERADGVMITLKDGRRLIDGMSSWWAALHGYNHPRLNAAATNQLA 74
Query: 64 TLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALG 123
+ + F T +P+++LA++LLE+ S + K+FF +SGS A + +K+ Y A G
Sbjct: 75 KMS-HIMFGGFTHEPAVELAQKLLEILPPS-LNKIFFADSGSVAVEVAMKMALQYQQAKG 132
Query: 124 RPNKKKFIARQKSYHGSTLIAASL------------SGLPALHQKFDLPAPFVLHTDCPH 171
+ KF + YHG T A S+ LP Q F LP P +
Sbjct: 133 EVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPV--QYF-LPQPSI------- 182
Query: 172 YWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVI-GAGGVIPPPATYFEKV 230
+ EE++ L+DL+ ++G E IAA I EPV+ GAGG+ TY K
Sbjct: 183 --------KFGEEWNDEAIEPLQDLLEQKGDE-IAALILEPVVQGAGGMYFYSPTYLVKA 233
Query: 231 QAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPE 290
+ + +Y +L I DE+ FGR G +F + + PD++ KAL+ Y+ + A + +
Sbjct: 234 RELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVVPDIMCIGKALTGGYLTLSATITTEA 293
Query: 291 VSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA 350
+++ I S F HG T+ +P++CA+A E++++ E + + +I + + +
Sbjct: 294 IAQTI--CSGEAKCFMHGPTFMANPLACAIAAESIRLLLESPWQQNIQRIEAQLKQELAP 351
Query: 351 FSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM 410
++ + E+R G I E K P + F +HG+ VR G +
Sbjct: 352 AAEFDSVAEVRVLGAIGVVEM---KEPVNMAT----LQPRF----VEHGIWVRPFGKLVY 400
Query: 411 MSPPFIMSPEEVDELISKYGKALK 434
+ PPFI+SP+E+ +L S + LK
Sbjct: 401 IMPPFIISPDELSQLTSGLLRVLK 424
|
Length = 429 |
| >gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 3e-49
Identities = 125/423 (29%), Positives = 192/423 (45%), Gaps = 52/423 (12%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY-HSFWNR 74
+V+ + EG +V+D +G +YLD L+ G P+++AA Q L +F N
Sbjct: 24 DVVLTRGEGVWVWDTDGNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLTLTSRAFRN- 82
Query: 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV--WYYNNALGRP-NKKKFI 131
L E L T S KV NSG+EA +T +K V W Y G P + + I
Sbjct: 83 ---DQLAPLYEELAALTGSH--KVLPMNSGAEAVETAIKAVRKWGYE-VKGVPEGQAEII 136
Query: 132 ARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191
++HG TL S P F PF PG + A
Sbjct: 137 VCADNFHGRTLSIVGFSTDPDARGGF---GPFT-------------PGFRVVPFGD--AE 178
Query: 192 NLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG 251
LE I P T+A F+ EP+ G GVI PPA YF +V+ + ++ I DE+ G
Sbjct: 179 ALEAAI---TPNTVA-FLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLG 234
Query: 252 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTY 311
R G + + I+ D+ KALS + P+ A+L + EV V+ HG T+
Sbjct: 235 RTGKLLAEEHEGIEADVTLIGKALSGGFYPVSAVLSNSEVLGVLKPG-------QHGSTF 287
Query: 312 SGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEF 371
G+P++CAVA ALK+ E ++E ++ F +G+++ S I+ E+RG GL+L E
Sbjct: 288 GGNPLACAVARAALKVLTEEGMIENAAEMGAYFLEGLRSIR-SNIVREVRGRGLMLAVEL 346
Query: 372 ADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR-VSGDNIMMSPPFIMSPEEVDELISKYG 430
PE G + ++ G+L + I ++PP +++ E+VD + +
Sbjct: 347 E----------PEAGGARQYCEALKERGLLAKDTHDHTIRLAPPLVITREQVDWALEQIA 396
Query: 431 KAL 433
K L
Sbjct: 397 KVL 399
|
Length = 401 |
| >gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 172 bits (439), Expect = 4e-49
Identities = 98/358 (27%), Positives = 160/358 (44%), Gaps = 65/358 (18%)
Query: 11 STDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS 70
S +P+ IE+ +G+Y+ DV+G +Y+D + G LG + P +V A QL +
Sbjct: 31 SVGGYPIFIERGKGAYLTDVDGNEYIDYVLGWGPLILGHAHPAVVEAVQEQLERGLSF-- 88
Query: 71 FWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKF 130
T+ ++LA+ L+E + KV F NSG+EA + ++L A + K
Sbjct: 89 --GAPTELEVELAELLIERV--PSIEKVRFVNSGTEATMSAIRL------ARAYTGRDKI 138
Query: 131 IARQKSYHGS-------------TLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAH 177
I + YHG TL + S G+PA K L P+
Sbjct: 139 IKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPY-------------- 184
Query: 178 PGETEEEYSTRLANNLEDL--ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVK 235
N+LE L +E + IAA I EPV G GV+PP + E ++ + +
Sbjct: 185 -------------NDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTE 231
Query: 236 KYDILFIADEVICAFGRLGTMFGC--DKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSE 293
++ L I DEVI F R+ G Y ++PDL + K + +PIGA E+ E
Sbjct: 232 EHGALLIFDEVITGF-RVA--LGGAQGYYGVEPDLTTLGKIIGGG-LPIGAFGGRAEIME 287
Query: 294 VIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALK-IYKERNIVEQVNKIAPKFQDGVKA 350
+ LG T SG+P++ A + L+ + E + E+++ + + +G++A
Sbjct: 288 QL----APLGPVYQAGTLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRA 341
|
Length = 432 |
| >gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Score = 167 bits (424), Expect = 4e-47
Identities = 122/438 (27%), Positives = 216/438 (49%), Gaps = 38/438 (8%)
Query: 4 PFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLN 63
P+T+ V+P + +EG + +G++ +D ++ W G + P+L AA +Q++
Sbjct: 16 PYTSMTSPLPVYP--VVSAEGCELILADGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQID 73
Query: 64 TLPFYH-SFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNAL 122
+ H F T P+++L ++L+ M T + VF +SGS A + +K+ Y A
Sbjct: 74 AMS--HVMFGGITHPPAIELCRKLVAM-TPQPLECVFLADSGSVAVEVAMKMALQYWQAK 130
Query: 123 GRPNKKKFIARQKSYHGSTLIAASLS----GLPALHQKFDLPAPFVLHTDCPHYWRYAHP 178
G P +++F+ + YHG T A S+ + +L++ + LP + + A
Sbjct: 131 GEP-RQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGY-LP---------ENLFAPAPQ 179
Query: 179 GETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVI-GAGGVIPPPATYFEKVQAVVKKY 237
+ E+ R L+ E IAA I EP++ GAGG+ + ++V+ + +
Sbjct: 180 SRFDGEWDERDIAPFARLMAAHRHE-IAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDRE 238
Query: 238 DILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHS 297
IL IADE+ FGR G +F C+ I PD++ KAL+ M + A L + EV+E I
Sbjct: 239 GILLIADEIATGFGRTGKLFACEHAGIAPDILCLGKALTGGTMTLSATLTTREVAETI-- 296
Query: 298 QSN-TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPI 356
SN G F HG T+ G+P++CAVA +L + + + +QV I + ++ + D+P+
Sbjct: 297 -SNGEAGCFMHGPTFMGNPLACAVANASLSLLESGDWQQQVAAIEAQLREELAPLRDAPM 355
Query: 357 IGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFI 416
+ ++R G I E P + +F Q G+ +R G I + PP+I
Sbjct: 356 VADVRVLGAIGVVET------TRPVNMA-ALQRFFVEQ----GVWIRPFGKLIYLMPPYI 404
Query: 417 MSPEEVDELISKYGKALK 434
+ PE++ L + +A++
Sbjct: 405 ILPEQLQRLTAAVNRAVQ 422
|
Length = 428 |
| >gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 1e-46
Identities = 125/430 (29%), Positives = 188/430 (43%), Gaps = 53/430 (12%)
Query: 9 WQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY 68
WQ+ ++ L+ D G +++D L G +G P ++AA QL P
Sbjct: 61 WQAGGLNTLI----------DTQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPL- 109
Query: 69 HSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKK 128
HS P L + L T K+ FF NSG+E+ + +KL Y + G K
Sbjct: 110 HS--QELLDPLRALLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRG---KF 164
Query: 129 KFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188
FIA ++HG +L A S + PA + F P H E
Sbjct: 165 TFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHV----------AFGDIEAMLKA 214
Query: 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC 248
L K+ + +AA I EP+ G GGVI PP Y V+A+ ++ L I DEV
Sbjct: 215 LNE------CKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQT 268
Query: 249 AFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHG 308
GR G MF C+ ++PD++ AKAL MPIGA + + V V+ F H
Sbjct: 269 GMGRTGKMFACEHEGVQPDILCLAKALGGGVMPIGATIATEAVFSVLFDN-----PFLHT 323
Query: 309 FTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFS-DSP-IIGEIRGTGLI 366
T+ G+P++CA A+ + E+N+ Q DG + + + P +I E RG GL+
Sbjct: 324 TTFGGNPLACAAALATINELLEKNLPAQAAIKGDFLLDGFQQLAAEYPDLIIEARGKGLL 383
Query: 367 LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN---IMMSPPFIMSPEEVD 423
+ EF DN+ IG F + + +LV + +N I + PP ++ E+
Sbjct: 384 MAIEFRDNE-----------IGYAFAKELFQQNILVAGTLNNAKSIRIEPPLTITIEQCA 432
Query: 424 ELISKYGKAL 433
+I AL
Sbjct: 433 LVIKAAKDAL 442
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine [Central intermediary metabolism, Polyamine biosynthesis]. Length = 442 |
| >gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 1e-46
Identities = 115/431 (26%), Positives = 212/431 (49%), Gaps = 27/431 (6%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
P + + G+ V DV+G +Y+D + +G S P++ A Q++ + H+ +N
Sbjct: 37 PTFAQSANGALVTDVDGNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQ--YIHTGFNVM 94
Query: 76 TKPS-LDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 134
++LA++L + S KV F NSG+EA + VK+ Y ++ I+
Sbjct: 95 MYEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKYTK------RQGIISFS 148
Query: 135 KSYHGSTLIAASL-SGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNL 193
+ +HG TL+ ++ S + F AP V P+ +R G TEE+Y +
Sbjct: 149 RGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPE-GLTEEQYDDFMIEEF 207
Query: 194 EDLILKE-GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252
++ + E PETIAA + EPV G GG I P + ++V+ + ++ ILF+ADE+ F R
Sbjct: 208 KNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFAR 267
Query: 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS 312
G F + + + PDL++ +K+L A +PI ++ E+ + S LG TY+
Sbjct: 268 TGKYFAIEHFDVVPDLITVSKSL-GAGVPISGVIGRKEIMD--ESAPGELGG-----TYA 319
Query: 313 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFS-DSPIIGEIRGTGLILGTEF 371
G P+ CA A+ L I ++ N+ ++ ++ + + IG++RG G + E
Sbjct: 320 GSPLGCAAALAVLDIIEKENLNDRAIELGKVVMNRFEEMKNKYNCIGDVRGLGAMCAFEL 379
Query: 372 ADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN---IMMSPPFIMSPEEVDELISK 428
++ E P+ + A + K G+L+ +G I + P +++ E+++E ++
Sbjct: 380 VQDRKTKE---PDKTLTANICKEANKRGLLLLSAGTYGNVIRVLMPLVITDEQLEEGLTI 436
Query: 429 YGKALKATEER 439
++L+A E+
Sbjct: 437 IEESLQACYEK 447
|
Length = 451 |
| >gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Score = 164 bits (416), Expect = 6e-46
Identities = 127/445 (28%), Positives = 206/445 (46%), Gaps = 39/445 (8%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
P K++G +V DV GK+YLD LAG ALG + P + L + H+ + T
Sbjct: 22 PTAFAKAQGCWVTDVEGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLPLHTL-DLT 80
Query: 76 TKPSLDLAKELLEMFTASKMA-KVFFTN-SGSEANDTQVKLVWYYNNALGRPNKKKFIAR 133
T + LL + KM K+ F SG++A + +KL Y GR N I+
Sbjct: 81 TPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTYT---GRTN---VISF 134
Query: 134 QKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWR--YAHPGETEEEYSTR-LA 190
+HG T+ A +++G + P V PH +R + GE S
Sbjct: 135 SGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFE 194
Query: 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250
N +ED+ + G + AA I E + G GGV+ P+ + +K++ V +K+DI I DEV F
Sbjct: 195 NFIEDV--ESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGF 252
Query: 251 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFT 310
GR GTMF + I+PD V +KA+ +P+ +L++PE + H T
Sbjct: 253 GRSGTMFAFEHAGIEPDFVVMSKAVGGG-LPLAVLLIAPEF--------DAWQPAGHTGT 303
Query: 311 YSGHPVSCAVAIEALKIYKE----RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLI 366
+ G+ ++ EAL +K+ +N E+ +I D +K P IG +RG GL+
Sbjct: 304 FRGNQLAMVTGTEALNYWKDDNLAQNAQERGERITSFLDDMIKEH---PCIGNVRGRGLM 360
Query: 367 LGTEFADNKSPNE---PFPPEWGIGAYFGAQCEKHGMLVRVSGDN---IMMSPPFIMSPE 420
G D + + +P + + A C ++G+L+ G + P + E
Sbjct: 361 QGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGGREGEVFRLLCPITIDQE 420
Query: 421 EVDELISKYGKALKATEERVKELKS 445
E +E IS++ +A+ EE + E++
Sbjct: 421 ECEEGISRFKQAV---EEALAEVRL 442
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase [Central intermediary metabolism, Other]. Length = 442 |
| >gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 1e-42
Identities = 126/433 (29%), Positives = 203/433 (46%), Gaps = 32/433 (7%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNT-LPFYHSFWNR 74
PL I K++G +V DV G +YLD LAG ALG + P ++ + L + LP H+ +
Sbjct: 41 PLAIAKAQGVWVTDVEGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLPL-HTL-DL 98
Query: 75 TTKPSLDLAKELLEMFTASKMAKVF-FTN-SGSEANDTQVKLVWYYNNALGRPNKKKFIA 132
TT ++ LL + FT SG++A + +KL Y GR N I+
Sbjct: 99 TTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTYT---GRSN---VIS 152
Query: 133 RQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWR--YAHPGETEEEYSTRLA 190
YHG T A +++G + + P V PH +R GE + T
Sbjct: 153 FSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYF 212
Query: 191 NNL-EDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA 249
N ED+ + G AA I E + G GGV P P + +K++ V +K+ IL I DEV
Sbjct: 213 ENFIEDV--ESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAG 270
Query: 250 FGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGF 309
F R G MF + I+PD++ +KA+ +P+ A+L I + + H
Sbjct: 271 FARTGKMFAFEHAGIEPDIIVMSKAVGGG-LPL-AVL-------GIKKEFDAWQPGGHTG 321
Query: 310 TYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILG 368
T+ G+ ++ A + LKI KE N+ + + + + P IG +RG GL++G
Sbjct: 322 TFRGNQLAMATGLTTLKILKEENLAQNAAERGEWLKAQLAELQKRYPCIGNVRGRGLMIG 381
Query: 369 TEFADNKSPNE---PFPPEWGIGAYFGAQCEKHGMLVRVSGDN---IMMSPPFIMSPEEV 422
E D + P + +P + + A C ++G+L+ G N + + PP +++ E
Sbjct: 382 IEIVDERQPADAMGSYPADGELAAAIQKACFENGLLLERGGRNGNVVRLLPPLLITQAEC 441
Query: 423 DELISKYGKALKA 435
+E I ++ +AL A
Sbjct: 442 EEFIDRFEQALLA 454
|
Length = 459 |
| >gnl|CDD|235716 PRK06149, PRK06149, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 2e-42
Identities = 127/430 (29%), Positives = 208/430 (48%), Gaps = 57/430 (13%)
Query: 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQ---LNTLPFYHS 70
P IE+ +++D+ G+ YLD + + T LG PRL AAA Q LNT +H
Sbjct: 566 ADPPQIERGWRHHLFDMAGRSYLDMVNNV--TVLGHGHPRLAAAAARQWSLLNTNSRFH- 622
Query: 71 FWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKF 130
+ + S LA + + VF NSGSEAND ++L W + GR +
Sbjct: 623 -YAAVAEFSERLAALAPD-----GLDTVFLVNSGSEANDLAIRLAWAAS---GRRD---V 670
Query: 131 IARQKSYHGSTLIAASLSGLPALHQKFDLPA-----PFVLHT-DCPHYWRYAHPG-ETEE 183
++ ++YHG T+ ++S A D P P +H + P+ +R G ++
Sbjct: 671 VSVLEAYHGWTVATDAVSTSIA-----DNPQALETRPDWVHPVESPNTYRGRFRGADSAA 725
Query: 184 EYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIA 243
+Y + LE+L +A FI EPV G G I P Y ++V A V+ + IA
Sbjct: 726 DYVRDVVAQLEELDASGRG--LAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIA 783
Query: 244 DEVICAFGRLGTMF-GCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTL 302
DEV +GRLG F G ++ + PD+++ AK + + + P+GA++ E++E + ++
Sbjct: 784 DEVQVGYGRLGHYFWGFEQQGVVPDIITMAKGMGNGH-PLGAVITRREIAEALEAE---- 838
Query: 303 GSF--SHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGE 359
G F S G G PVSC + + L + +E + E ++ + ++A +D P+IG
Sbjct: 839 GYFFSSTG----GSPVSCRIGMAVLDVLREEKLQENARRVGDHLKARLEALADRHPLIGA 894
Query: 360 IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH---GMLVRVSGD--NIM-MSP 413
+ G GL LG E ++ EP E A C++ G++++ +GD NI+ + P
Sbjct: 895 VHGMGLYLGVELVRDRQTLEPATEE------TAAICDRLLELGVIMQPTGDHLNILKIKP 948
Query: 414 PFIMSPEEVD 423
P + E D
Sbjct: 949 PLCLDRESAD 958
|
Length = 972 |
| >gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 154 bits (390), Expect = 3e-42
Identities = 104/382 (27%), Positives = 180/382 (47%), Gaps = 46/382 (12%)
Query: 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS-FW 72
+HP+ +++E V+DV G++YLD G+ G P++VAA AQL H+ F
Sbjct: 22 IHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKK--LSHTCFQ 79
Query: 73 NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIA 132
+P L+L +++ + K +GSEA + VK+ G IA
Sbjct: 80 VLAYEPYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSG------VIA 133
Query: 133 RQKSYHGSTLIAASLSGLPALHQK---------FDLPAPFVLHTDCPHYWRYAHPGETEE 183
+YHG T +L+G + + P LH G +E+
Sbjct: 134 FTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLH------------GVSED 181
Query: 184 EYSTRLANNLEDLILKE--GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILF 241
+ + + I K PE IAA I EPV G GG + ++++A+ ++ I+
Sbjct: 182 DAIASI-----ERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIML 236
Query: 242 IADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNT 301
IADEV GR GT+F ++ + DL +FAK+++ + P+ + EV + I
Sbjct: 237 IADEVQTGAGRTGTLFAMEQMGVAADLTTFAKSIAGGF-PLAGVTGRAEVMDAI------ 289
Query: 302 LGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEI 360
G TY+G+P++CA A+ LK++++ N++++ N + K +DG+ A P IG++
Sbjct: 290 -APGGLGGTYAGNPIACAAALAVLKVFEQENLLQKANALGEKLKDGLLAIAEKHPEIGDV 348
Query: 361 RGTGLILGTEFADNKSPNEPFP 382
RG G ++ E ++ ++P
Sbjct: 349 RGLGAMIAIELFEDGDHSKPNA 370
|
Length = 425 |
| >gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 4e-42
Identities = 116/414 (28%), Positives = 189/414 (45%), Gaps = 70/414 (16%)
Query: 21 KSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80
K+EG+Y+ D +GKKYLD +G+ T LG P++ A Q + +HS P+L
Sbjct: 17 KAEGNYLIDTDGKKYLDFSSGIGVTNLG-FHPQVQQALQKQAGLI--WHS-------PNL 66
Query: 81 ---DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSY 137
L +E+ + K FF NSG+EAN+ +K+ A G K++ I Q S+
Sbjct: 67 YLNSLQEEVAQKLIGDKDYLAFFCNSGAEANEAAIKIA---RKATG---KQEIITFQNSF 120
Query: 138 HGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLI 197
HG T + S +G + F V PH+ YA + N+L + +
Sbjct: 121 HGRTFGSMSATGQDKIKDGF---GDGV-----PHF-SYA------------IFNDL-NSV 158
Query: 198 LKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF 257
+ AA + E V G GV+P + + + ++ IL I DEV GR G ++
Sbjct: 159 KALVNKNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLY 218
Query: 258 GCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSF---SHGFTYSGH 314
+ Y I+PD+ + AK L++ +P+GA+L ++S+ G+F SHG T+ G+
Sbjct: 219 AFEHYGIEPDIFTLAKGLANG-VPVGAML----------AKSSLGGAFGYGSHGSTFGGN 267
Query: 315 PVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGV-KAFSDSPIIGEIRGTGLILGTEFAD 373
+S A A L I +EQ + Q+ + KA D + +RG G ++G E
Sbjct: 268 KLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQDKETVTTVRGLGYMIGIETTA 327
Query: 374 NKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN-IMMSPPFIMSPEEVDELI 426
+ S G++V +G N I + PP ++ EE+++ I
Sbjct: 328 DLSQ-------------LVEAARDKGLIVLTAGTNVIRLLPPLTLTKEEIEQGI 368
|
Length = 375 |
| >gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 1e-41
Identities = 113/373 (30%), Positives = 172/373 (46%), Gaps = 79/373 (21%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQ----LNTLPFYHSF 71
+V +GS++YD NGK+YLD + G LG P +V A AQ +N P +F
Sbjct: 19 DIVFTHGKGSWLYDHNGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLINPSP---AF 75
Query: 72 WNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKK--- 128
+N +P LA L + S KVFF NSG+EAN+ +KL + GR +K
Sbjct: 76 YN---EPMAKLAGLLTQ---HSCFDKVFFANSGAEANEGAIKLARKW----GRKHKNGAY 125
Query: 129 KFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188
+ I S+HG TL S SG P F AP V PG + E
Sbjct: 126 EIITFDHSFHGRTLATMSASGKPGWDTIF---APQV-------------PGFPKAEL--- 166
Query: 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC 248
N++ + +T+A + EPV G GGVIP + ++++A+ K++ +L I DEV
Sbjct: 167 --NDIASVEKLITDKTVAVML-EPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQT 223
Query: 249 AFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSH- 307
GR GT+F + I+PD+++ K + +P+ A+L EV+ F
Sbjct: 224 GCGRTGTLFAYELSGIEPDIMTLGKGIGGG-VPLAALLAKAEVA-----------VFEAG 271
Query: 308 --GFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA-----------FSDS 354
G TY+G+P+ AV + ++ Q+ +AP F +GV+A S+
Sbjct: 272 DQGGTYNGNPLMTAVGVA---------VISQL--LAPGFLEGVRARGEYLKEKLLELSEE 320
Query: 355 PIIGEIRGTGLIL 367
+ RG GL+
Sbjct: 321 RGLEGERGEGLLR 333
|
Length = 395 |
| >gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 9e-41
Identities = 128/458 (27%), Positives = 205/458 (44%), Gaps = 75/458 (16%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQL-NTLPFYHSFWNR 74
PL ++++ G YV DV G++++D LAG ALG + P ++ A L + LP +
Sbjct: 46 PLALKRARGIYVEDVEGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELPLH------ 99
Query: 75 TTKPSLDLAKELLEMFTA----------SKMAKVFFTN-SGSEANDTQVKLVWYYNNALG 123
+LDL + + F ++ AK+ F +G++A + +KLV A G
Sbjct: 100 ----TLDLTTPVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEAALKLV---KTATG 152
Query: 124 RPNKKKFIARQKSYHGSTLIAASLSG-----------LPALHQKFDLPAPFVLHTDCPHY 172
R F Q YHG + A SL G LP + F LP P+ CP
Sbjct: 153 RSTVLSF---QGGYHGMSQGALSLMGNLGPKKPLGALLPGVQ--F-LPYPY--DYRCP-- 202
Query: 173 WRYAHPGETEEEYSTR-LANNLEDLILKEGPE----TIAAFIAEPVIGAGGVIPPPATYF 227
+ GE + L N L+D PE AA I E V G GGVIP P +
Sbjct: 203 --FGLGGEAGVRANLHYLENLLDD------PESGVVLPAAVILEVVQGEGGVIPAPIEWL 254
Query: 228 EKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILV 287
++ + ++ I I DE+ FGR G MF + I PD+V +KA IG L
Sbjct: 255 RGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVLSKA-------IGGSL- 306
Query: 288 SPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDG 347
P V +T +H T+ G+ ++ A L+ KE + E + + ++
Sbjct: 307 -PLAVVVYREWLDTWQPGAHAGTFRGNQMAMAAGSATLRYIKEHRLAEHAAAMGERLREH 365
Query: 348 VKAF-SDSPIIGEIRGTGLILGTEFAD-NKSPN-EPFPPEWG-IGAYFGAQCEKHGMLVR 403
++ D P +G++RG GL+LG E D P+ PP G + + +C + G+++
Sbjct: 366 LRQLQRDYPQLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRRGLILE 425
Query: 404 VSGDN---IMMSPPFIMSPEEVDELISKYGKALKATEE 438
+ G + + PP I++ E++DE+ + +A+ A
Sbjct: 426 LGGRHGSVVRFLPPLIITAEQIDEVAEIFAEAVAAAVA 463
|
Length = 464 |
| >gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 4e-40
Identities = 112/430 (26%), Positives = 194/430 (45%), Gaps = 36/430 (8%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS-FWNR 74
P+ + ++ G V DV+G + +D +G+ T++G S PR+V A Q+ F H+ F
Sbjct: 39 PVYVARAGGGIVEDVDGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVAR--FTHTCFMVT 96
Query: 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 134
+ + +A++L + + NSG+EA + VK+ + GR +
Sbjct: 97 PYEGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIA---RSYTGRQ---AVVVFD 150
Query: 135 KSYHGSTLIAASLSG--LPALHQKFDLPAPFVLHTDCPHYWRYAH-PGETEEEYSTRLAN 191
+YHG T + +L+ +P F AP V + +R EE + R
Sbjct: 151 HAYHGRTNLTMALTAKSMPYKSG-FGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAIT 209
Query: 192 NLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG 251
+E + G + +AA I EP+ G GG I P + + ++ ++FIADEV F
Sbjct: 210 VIEKQV---GADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFA 266
Query: 252 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTY 311
R G F C+ I PDL++ AK ++ +P+ A+ E+ + H LG TY
Sbjct: 267 RTGAWFACEHEGIVPDLITTAKGIAGG-LPLSAVTGRAEIMDAPHPGG--LGG-----TY 318
Query: 312 SGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTE 370
G+PV+CA A+ A++ +E ++V + +I D ++A + IG++RG G ++ E
Sbjct: 319 GGNPVACAAALAAIETIEEDDLVARARQIEALMTDRLRALAAEDDRIGDVRGRGAMIAIE 378
Query: 371 F--ADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG---DNIMMSPPFIMSPEEVDEL 425
P+ E + A G++V G + I + PP ++ E + E
Sbjct: 379 LVKPGTTEPD----AE--LTKALAAAAHAAGVIVLTCGTYGNVIRLLPPLVIGDELLREG 432
Query: 426 ISKYGKALKA 435
+ AL
Sbjct: 433 LDVLEAALAD 442
|
Length = 443 |
| >gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 148 bits (374), Expect = 9e-40
Identities = 119/433 (27%), Positives = 216/433 (49%), Gaps = 40/433 (9%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
PLV ++ G+ + DV+G ++D LAG + G S P+LV A Q+ + HS T
Sbjct: 36 PLVPKRGFGALIEDVDGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQ--HSMIGYT 93
Query: 76 -TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 134
++ ++ +A++L E+ + + KV F SGS+A D +K+ + + RP FI
Sbjct: 94 HSERAIRVAEKLAEI-SPIENPKVLFGLSGSDAVDMAIKVSKF---STRRPWILAFIG-- 147
Query: 135 KSYHGSTLIAASLSGLPALHQK-FDLPAPFVLHTDCPHYWR-------YAHPGETEEEYS 186
+YHG TL A S++ + ++ F P V+ P+ +R Y P +E
Sbjct: 148 -AYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEP----DELI 202
Query: 187 TRLANNLEDLILKE--GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIAD 244
R + LE+ + P+ +AA AEP+ G G++ PP +F++++ ++ ++ IL + D
Sbjct: 203 NRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMD 262
Query: 245 EVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGS 304
EV GR G F + + +KPDL+ F K ++S M + ++ E+ + L S
Sbjct: 263 EVQTGIGRTGKWFASEWFEVKPDLIIFGKGVASG-MGLSGVIGRKELMD--------LTS 313
Query: 305 FSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGT 363
S T + +PV A A L+I +E N+++ K+ + + +S +IG++RG
Sbjct: 314 GSALLTPAANPVISAAAEATLEIIEEENLLKNALKVGEFIKKRLLEMKESFEVIGDVRGK 373
Query: 364 GLILGTEFA-DNKSPNEPFPPEWGIGAY-FGAQCEKHGMLVRVSGDNIMMSPPFIMSPEE 421
GL++G E +N P+ + A+ G +GM G+ I ++PP +++ E
Sbjct: 374 GLMIGVEIVKENGKPDPELTGKICWRAFELGLILPSYGMF----GNVIRITPPLVITKEI 429
Query: 422 VDELISKYGKALK 434
++ + +A+K
Sbjct: 430 AEKGLEIMERAIK 442
|
Length = 457 |
| >gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 1e-37
Identities = 101/375 (26%), Positives = 173/375 (46%), Gaps = 44/375 (11%)
Query: 20 EKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPS 79
+++E + ++D G++Y+D AG+ G PR++AA AQL+ F H+ +
Sbjct: 27 DRAENAEIWDKEGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDR--FTHTCHQVVPYEN 84
Query: 80 -LDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYH 138
+ LA+ L + K F +G+EA + VK+ A GR IA +H
Sbjct: 85 YVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIA---RAATGRS---AVIAFGGGFH 138
Query: 139 GSTLIAASLSGLPALHQK---------FDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189
G T + SL+G ++ + +P P LH G + E+ L
Sbjct: 139 GRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVELH------------GVSVEQSLAAL 186
Query: 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA 249
+ + P+ +AA I EPV G GG P PA + + ++ + ++ IL IADEV
Sbjct: 187 DKLFKADV---DPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTG 243
Query: 250 FGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGF 309
F R G +F + + + DL + AK L+ + P+ A+ E+ + G G
Sbjct: 244 FARTGKLFAMEHHEVAADLTTMAKGLAGGF-PLAAVTGRAEIMDAPG-----PGGL--GG 295
Query: 310 TYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILG 368
TY G+P+ A A L + +E ++ E+ N++ + + + + ++ P I +IRG G +
Sbjct: 296 TYGGNPLGIAAAHAVLDVIEEEDLCERANQLGNRLKQRLASLRETVPEIADIRGPGFMNA 355
Query: 369 TEF--ADNKSPNEPF 381
EF AD+ P+ F
Sbjct: 356 VEFNDADSGLPSAEF 370
|
Length = 425 |
| >gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 4e-37
Identities = 97/376 (25%), Positives = 168/376 (44%), Gaps = 45/376 (11%)
Query: 11 STDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS 70
S P + + +G+Y+YDV+G +Y+D + LG + PR+V A L +
Sbjct: 26 SVGPTPFFVARGKGAYLYDVDGNEYIDYVLSWGPLILGHAHPRVVEAVKEALE----RGT 81
Query: 71 FWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKF 130
+ T+ + LAKE++ + + V F NSG+EA + V+L A G + K
Sbjct: 82 SYGAPTEAEILLAKEIISRVPS--VEMVRFVNSGTEATMSAVRL------ARGYTGRDKI 133
Query: 131 IARQKSYHGS--TLIAASLSGL--PALHQKFDLPAPFVLHT-DCPHYWRYAHPGETEEEY 185
I + YHG L+ + SG L +P F T P+
Sbjct: 134 IKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPY-------------- 179
Query: 186 STRLANNLEDL--ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIA 243
N+LE L + +E E IA I EPV G GV+PP + ++A+ ++Y L I
Sbjct: 180 -----NDLEALEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIF 234
Query: 244 DEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLG 303
DEV+ F R+ + + ++PDL + K + +P+GA E+ E + + G
Sbjct: 235 DEVMTGF-RVALGGAQEYFGVEPDLTTLGKIIGGG-LPVGAFGGRREIMERLAPE----G 288
Query: 304 SFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGV-KAFSDSPIIGEIRG 362
T SG+P++ A + LK+ E + +++++A + +G+ + D+ I +
Sbjct: 289 PVYQAGTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDTGIPHTVNR 348
Query: 363 TGLILGTEFADNKSPN 378
G + F + + N
Sbjct: 349 VGSMFSLFFTEEEVTN 364
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 423 |
| >gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 9e-37
Identities = 115/428 (26%), Positives = 191/428 (44%), Gaps = 48/428 (11%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
P+ + G ++ D G+ YLD + C +G + PR+VAAA Q L N
Sbjct: 607 PIKFVRGWGVWLIDNRGRAYLDCFNNV-C-HVGHAHPRVVAAAARQAARL-------NTN 657
Query: 76 TK---PSL-DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFI 131
T+ ++ A+ L + FF NSGSEAN ++L + + I
Sbjct: 658 TRYLHDAIVAYAERLTATLPDG-LTVAFFVNSGSEANSLALRLARAHTGQ------RDAI 710
Query: 132 ARQKSYHGSTLIAASLSGLPALHQKFDLP-----APFVLHTDCPHYWRYAHPGETEEEYS 186
+YHG+T LS KF+ V + P +R + E+
Sbjct: 711 VLDHAYHGTTTELIDLSPY-----KFNRKGGKGRPDHVEVAEVPDSYR-GPERWPDAEHG 764
Query: 187 TRLANNLEDLI--LKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIAD 244
R A ++ + I + A FIAE + G I P Y +V A+V+ + IAD
Sbjct: 765 RRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIAD 824
Query: 245 EVICAFGRLGT-MFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLG 303
EV FGR+G+ + + + PD+V+ K + + + P+GA++ + E+++ S N +
Sbjct: 825 EVQVGFGRVGSHWWAFETQGVVPDIVTMGKPIGNGH-PMGAVVTTREIAD---SFDNGME 880
Query: 304 SFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRG 362
F+ T+ G+PVSCA+ + L I ++ ++ +I G++ D IIG++RG
Sbjct: 881 YFN---TFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYLLAGLRELQDRFDIIGDVRG 937
Query: 363 TGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--DNIM-MSPPFIMSP 419
GL LG E ++ P I Y + G+L+ G DN++ + PP I S
Sbjct: 938 MGLFLGIELVTDRKTKAPAT---AIARYVKNGARERGILIGTEGPHDNVLKIRPPLIFSR 994
Query: 420 EEVDELIS 427
+ D L+
Sbjct: 995 ADADHLLE 1002
|
Length = 1013 |
| >gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 4e-36
Identities = 105/359 (29%), Positives = 176/359 (49%), Gaps = 30/359 (8%)
Query: 20 EKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPS 79
E++E + ++DV G++Y+D AG+ G P++VAA QL+ F H+ + S
Sbjct: 27 ERAENATLWDVEGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQ--FTHTAYQIVPYAS 84
Query: 80 -LDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYH 138
+ LA+ + + AK F +G+EA + VK+ Y GRP IA ++H
Sbjct: 85 YVTLAERINALAPIDGPAKTAFFTTGAEAVENAVKIARAYT---GRPG---VIAFGGAFH 138
Query: 139 GSTLIAASLSGLPALHQKFDLPAP-FVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLI 197
G TL+ +L+G A ++ P P + H P+ G + EE A + + +
Sbjct: 139 GRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPN----ELHGVSVEE-----ALSSVERL 189
Query: 198 LKE--GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT 255
K P+ +AA + EP+ G GG P + ++ + ++ IL IADEV F R G
Sbjct: 190 FKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGK 249
Query: 256 MFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHP 315
+F + Y +KPDL++ AK+L MPI A++ EV + + G G TY+G+P
Sbjct: 250 LFAMEYYDVKPDLITMAKSLGGG-MPISAVVGRAEVMD-----APAPGGL--GGTYAGNP 301
Query: 316 VSCAVAIEALKIYKERNIVEQVNKIAPKFQDGV-KAFSDSPIIGEIRGTGLILGTEFAD 373
++ A A+ L + E + ++ + + + KA + P I +IR G ++ EF D
Sbjct: 302 LAVAAALAVLDVIAEEKLCQRALILGAHLVEVLEKAKASCPAIVDIRARGSMVAVEFND 360
|
Length = 421 |
| >gnl|CDD|234607 PRK00062, PRK00062, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 1e-31
Identities = 115/467 (24%), Positives = 187/467 (40%), Gaps = 122/467 (26%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTA-----LGGSEPRLVAAATAQLNT-----L 65
P IE+++G+Y+YDV+G +Y+D + + LG + P +V A
Sbjct: 33 PRFIERAKGAYLYDVDGNEYID-----YVGSWGPMILGHAHPEVVEAVIEAAEKGLSFGA 87
Query: 66 PFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRP 125
P T+ ++LA+ ++E+ + + V NSG+EA + ++L A G
Sbjct: 88 P---------TELEVELAELVIELVPS--IEMVRMVNSGTEATMSAIRL------ARGYT 130
Query: 126 NKKKFIARQKSYHG---STLIAASLSGLPALHQKFDL--PAPFVLHT-DCPHYWRYAHPG 179
+ K I + YHG S L+ A SG L P F HT P
Sbjct: 131 GRDKIIKFEGCYHGHADSLLVKAG-SGAATLGLPDSPGVPEDFAKHTLTAP--------- 180
Query: 180 ETEEEYSTRLANNLEDL--ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKY 237
Y N+LE + + +E + IAA I EPV G GV+PP + E ++ + ++
Sbjct: 181 -----Y-----NDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEH 230
Query: 238 DILFIADEVICAFGRLGTMFGC--DKYSIKPDLVSFAKALSSAYMPIGAI--------LV 287
L I DEV+ F R+ G Y + PDL + K + +P+GA +
Sbjct: 231 GALLIFDEVMTGF-RVA--LGGAQGYYGVTPDLTTLGKIIGGG-LPVGAFGGRREIMEQL 286
Query: 288 SPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDG 347
+P LG T SG+P++ A + LK+ KE E++ + + +G
Sbjct: 287 AP------------LGPVYQAGTLSGNPLAMAAGLATLKLLKEPGFYEELEALTKRLAEG 334
Query: 348 VK-AFSDSPIIGEIRGTGLILGTEFADNKSPN---------EPFPPEWGIGAYFGAQCEK 397
+K A + I + G + G F D N E F +F
Sbjct: 335 LKEAAKKAGIPLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERF------ARFF------ 382
Query: 398 HGMLVRVSGDNIMMSPP------FI---MSPEEVDELISKYGKALKA 435
H ML G + P F+ + E++++ + KA A
Sbjct: 383 HAMLDE--GVYL---APSQFEAGFVSAAHTDEDIEKTLEAARKAFAA 424
|
Length = 426 |
| >gnl|CDD|233853 TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 2e-30
Identities = 105/428 (24%), Positives = 181/428 (42%), Gaps = 63/428 (14%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
P V EK++GS ++D +GK+Y+D AG G + P+L A L HS
Sbjct: 18 PTVFEKAKGSTLWDEDGKEYIDFFAGAGALNYGHNNPKLKQALIDYLADDGIIHS----- 72
Query: 76 TKPSLDLA----KELLEMFTASKMA------KVFFTN-SGSEANDTQVKLVWYYNNALGR 124
LD+A +E LE F + KV F +G+ A ++ +KL GR
Sbjct: 73 ----LDMATEAKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVESALKLA---RKVTGR 125
Query: 125 PNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEE 184
N ++ ++HG TL + S++G Q +P V Y + +
Sbjct: 126 SN---VVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYL------GGDVD 176
Query: 185 YSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIAD 244
LED G + AA I E V G GG+ + ++++ + +++DIL I D
Sbjct: 177 TIAYFEKLLEDS--SSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVD 234
Query: 245 EVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGS 304
++ GR GT F + I+PD+V +K++S +P+ L+ PE+ +
Sbjct: 235 DIQAGCGRTGTFFSFEPAGIEPDIVCLSKSISGYGLPLALTLIKPEL--------DVWKP 286
Query: 305 FSHGFTYSGHPVSCAVAIEALKIY-----KERNIVEQVNKIAPKFQDGVKAFSDSPIIGE 359
H T+ G+ ++ A AL+ Y E+ + + I + V + + +I +
Sbjct: 287 GEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQERLDRIVAEYPE--LIKQ 344
Query: 360 IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN---IMMSPPFI 416
+RG GL+ G E D + ++G+++ SG N I + PP
Sbjct: 345 VRGRGLMQGIECGDG-----------DLAGKIAKAAFENGLIIETSGPNDEVIKLLPPLT 393
Query: 417 MSPEEVDE 424
+ E + +
Sbjct: 394 IDEETLQQ 401
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (SP|Q9Z3R2) or 1,3-diaminopropane (SP|P44951) biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance [Cellular processes, Adaptations to atypical conditions]. Length = 412 |
| >gnl|CDD|101376 PRK04013, argD, acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 7e-30
Identities = 107/411 (26%), Positives = 178/411 (43%), Gaps = 72/411 (17%)
Query: 17 LVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTT 76
L + + EG YV+D G++YLD +AG+ LG + P V + QL L +
Sbjct: 8 LRLVRGEGIYVWDSQGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVVAGPMFEHEE 67
Query: 77 KPSLDLAKELLEMFTA-SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQK 135
K +E+LE + V+ NSG+EA + +K Y GR K+ IA
Sbjct: 68 K------EEMLEELSKWVNYEYVYMGNSGTEAVEAALKFARLYT---GR---KEIIAMTN 115
Query: 136 SYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLED 195
++HG T+ A S + P + F+ P V PG + N++E
Sbjct: 116 AFHGRTMGALSATWKPKYREDFE---PLV-------------PGFKHIPF-----NDVE- 153
Query: 196 LILKEG-PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLG 254
KE + AA I EP+ G GG++P + + ++ + + L IADEV R G
Sbjct: 154 -AAKEAITKETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTG 211
Query: 255 TMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGH 314
+ Y ++PD+V+ K + + +P+ L + +V HG T+ G+
Sbjct: 212 KFLAIEHYKVEPDIVTMGKGIGNG-VPVSLTLTNFDVER-----------GKHGSTFGGN 259
Query: 315 PVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADN 374
P++C L+I + +VE K KF + ++ RG GL++G
Sbjct: 260 PLACKAVAVTLRILRRERLVE---KAGEKFIE----IKGERVV-TTRGRGLMIGIVL--- 308
Query: 375 KSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDE 424
K P +G Y + + G LV +G ++ + PP I+S + ++E
Sbjct: 309 KKP---------VGKYV-EELQNRGYLVHTAGQRVIRLLPPLIISKDTMEE 349
|
Length = 364 |
| >gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (301), Expect = 7e-30
Identities = 100/359 (27%), Positives = 171/359 (47%), Gaps = 28/359 (7%)
Query: 22 SEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPS-L 80
+E + + DV G +Y+D AG+ G P LVAA QL F H+ + S +
Sbjct: 29 AENATLKDVEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQ--FTHTAYQIVPYESYV 86
Query: 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGS 140
LA+++ + S AK F +G+EA + VK+ + GRP IA +HG
Sbjct: 87 TLAEKINALAPVSGQAKTAFFTTGAEAVENAVKIARAHT---GRPG---VIAFSGGFHGR 140
Query: 141 TLIAASLSGLPALHQKFDLPAP-FVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILK 199
T + +L+G A ++ P P V H +P + + + +E L
Sbjct: 141 TYMTMALTGKVAPYKIGFGPFPGSVYHV--------PYPSDLHGISTQDSLDAIERLFKS 192
Query: 200 E-GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFG 258
+ + +AA I EPV G GG P ++ + ++ I+ IADEV F R G +F
Sbjct: 193 DIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFA 252
Query: 259 CDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSC 318
D Y+ KPDL++ AK+L+ MP+ ++ + + + + G G TY+G+P++
Sbjct: 253 MDHYADKPDLMTMAKSLAGG-MPLSGVVGNANIMD-----APAPGGL--GGTYAGNPLAV 304
Query: 319 AVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEFADNKS 376
A A L I + ++ E+ N++ + ++ + +S P I +RG G ++ EF D ++
Sbjct: 305 AAAHAVLNIIDKESLCERANQLGQRLKNTLIDAKESVPAIAAVRGLGSMIAAEFNDPQT 363
|
Length = 421 |
| >gnl|CDD|183493 PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 4e-25
Identities = 101/348 (29%), Positives = 160/348 (45%), Gaps = 48/348 (13%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
P+V+E+ +G+Y YDV+G KY+D LA G + P + A T Y +
Sbjct: 36 PVVMERGKGAYFYDVDGNKYIDYLAAYGPIITGHAHPHITKAITEAAENGVLYGT----P 91
Query: 76 TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQK 135
T+ ++ AK L E + + KV F NSG+EA T +++ Y GR KF
Sbjct: 92 TELEIEFAKMLKEAIPS--LEKVRFVNSGTEAVMTTIRVARAYT---GRTKIIKFAG--- 143
Query: 136 SYHGST---LIAASLSGLPALHQKFDLPAPFVLHT-DCPHYWRYAHPGETEEEYSTRLAN 191
YHG + L+AA SG P L T D P +E T N
Sbjct: 144 CYHGHSDLVLVAAG-SG------------PSTLGTPDSA-----GVPKSIAQEVITVPFN 185
Query: 192 NLEDL---ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC 248
++E L + K G E +AA + EP++G G++ P + E V + + L I DEVI
Sbjct: 186 DIEALKEALDKWGDE-VAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVIT 244
Query: 249 AFGRLGTMFGC--DKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFS 306
AF R M+G D ++PDL + K + +PIGA ++ E Q LG
Sbjct: 245 AF-RF--MYGGAQDLLGVEPDLTALGKIIGGG-LPIGAYGGRKDIME----QVAPLGPAY 296
Query: 307 HGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS 354
T +G+P S A I L++ ++ + E+++++ ++G+ ++
Sbjct: 297 QAGTMAGNPASMAAGIACLEVLQQEGVYEKLDRLGAMLEEGILEAAEK 344
|
Length = 428 |
| >gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 1e-23
Identities = 115/438 (26%), Positives = 192/438 (43%), Gaps = 83/438 (18%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTAL--GGSEPRLVAAATAQLNTLPFYHSFWN 73
P+V +K++GS++YD +GK+Y+D AG AL G + P L A L H
Sbjct: 22 PVVFDKAKGSWLYDEDGKEYIDFFAG--AGALNYGHNNPVLKQALIDYLQRDGITHG--- 76
Query: 74 RTTKPSLDLA----KELLEMFTASKMA------KVFFTN-SGSEANDTQVKLVWYYNNAL 122
LD+ +E LE F + + KV FT +G+ A + +KL
Sbjct: 77 ------LDMHTTAKREFLETFEETILKPRGLDYKVQFTGPTGTNAVEAALKLA---RKVT 127
Query: 123 GRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETE 182
GR N +A +HG TL + +++G Q +P V P Y Y
Sbjct: 128 GRTN---IVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRM--P-YDGYFGGDVDT 181
Query: 183 EEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFI 242
Y +L LED G + AA I E V G GG+ A + +++ + +K+DIL I
Sbjct: 182 LAYLEKL---LEDS--SSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLI 236
Query: 243 ADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTL 302
D++ GR GT F ++ I PD+V+ +K++S +P+ +L+ PE+ + N
Sbjct: 237 VDDIQAGCGRTGTFFSFERAGITPDIVTLSKSISGYGLPMALVLIKPELDVWKPGEHN-- 294
Query: 303 GSF---SHGFTYSGHPVSCAVAIE----------ALKIYKERNIVEQVNKIAPKFQDGVK 349
G+F + F V+ A+E +K K + E++ +IA K+
Sbjct: 295 GTFRGNNLAF------VTATAALEEYWSDDAFEKEVK-AKGELVRERLEEIAAKY----- 342
Query: 350 AFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN- 408
+ E+RG G++ G +F D + A+ ++G+++ SG
Sbjct: 343 ----PGLGAEVRGRGMMQGIDFGDG-----------ELAGKIAAEAFENGLIIETSGPED 387
Query: 409 --IMMSPPFIMSPEEVDE 424
+ + PP + EE++E
Sbjct: 388 EVVKLLPPLTIDEEELEE 405
|
Length = 425 |
| >gnl|CDD|180471 PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 3e-23
Identities = 91/353 (25%), Positives = 144/353 (40%), Gaps = 73/353 (20%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
P I++ G++V+DV+G +Y++ GL LG + P +V A L
Sbjct: 31 PGFIQRGSGAHVWDVDGNEYIEYGMGLRAVGLGHAYPPVVEAVREAL-------QDGCNF 83
Query: 76 TKPS---LDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYN--NALGRPNKKKF 130
T+PS LD A+ LE+ + M K F +GS+A V+L Y + + R F
Sbjct: 84 TRPSAIELDAAESFLELIDGADMVK--FCKNGSDATSAAVRLARAYTGRDLVARCADHPF 141
Query: 131 IARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190
+ + G+T ++A G+PA L F RY
Sbjct: 142 FSTDDWFIGTTPMSA---GIPASVS--ALTVTF----------RY--------------- 171
Query: 191 NNLEDL--ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC 248
N++ L + ++ P IA I EP P + +V+ + + LFI DE+I
Sbjct: 172 NDIASLEALFEDHPGRIACVILEPATAD----EPQDGFLHEVRRLCHENGALFILDEMIT 227
Query: 249 AFGRLGTMFGCDKYSIKPDLVSFAKALS-----SA------YMPIGAILVSPEVSEVIHS 297
F R Y I PDL F KAL SA YM +G + + E +
Sbjct: 228 GF-RWHMRGAQKLYGIVPDLSCFGKALGNGFAVSALAGKREYMELGGLEHTDR--ERVFL 284
Query: 298 QSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA 350
S T G+ +H A AI + IY++ +++E++++ K GV
Sbjct: 285 LSTTHGAETHAL---------AAAIATMAIYRDEDVIERLHEQGAKLAAGVNE 328
|
Length = 431 |
| >gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 3e-23
Identities = 115/464 (24%), Positives = 180/464 (38%), Gaps = 81/464 (17%)
Query: 12 TDVHPLV--IEKSEGSYVYDVN-GKKYLDSLAGLWCTALGGSEPRLVAA-------ATAQ 61
D LV +E+S+GSY+ D G++YLD +ALG + P L A
Sbjct: 21 VDGFDLVLDLERSQGSYLVDARTGRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAA 80
Query: 62 LNTLPFYHSFWNRTTKPSL-DLAKELLEMF--TASKMA------KVFFTNSGSEA--NDT 110
LN KPS D+ + F T +++ +FF + G+ A N
Sbjct: 81 LN-------------KPSNSDVYTVEMARFVDTFARVLGDPELPHLFFVDGGALAVENAL 127
Query: 111 QVKLVW--YYNNALGRPNKK--KFIARQKSYHGSTLIAASLSG-LPALHQ---KFDLPAP 162
+V W N A G K + + ++HG + SL+ P KFD P
Sbjct: 128 KVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWP-- 185
Query: 163 FVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDL--ILKEGPETIAAFIAEPVIGAGGVI 220
D P R+ PGE EE A L + P IA FIAEP+ G GG
Sbjct: 186 ---RIDNPKL-RFPLPGEDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDN 241
Query: 221 PPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYM 280
+F ++ + ++D L I DEV G GT + + ++PD+V+F K
Sbjct: 242 HFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIVAFGKK-----T 296
Query: 281 PIGAILVSPEVSEV---IHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQV 337
+ I+ V EV + + S+ + S T+ G+ V A L++ +E +VE
Sbjct: 297 QVCGIMAGRRVDEVEDNVFAVSSRINS-----TWGGNLVDMVRARRILEVIEEDGLVENA 351
Query: 338 NKIAPKFQDG----VKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGA 393
+ F ++ +RG GL+ + +E
Sbjct: 352 ARQGEYLLARLEELAAEFPA--VVSNVRGRGLMCAFDLPTTADRDE-----------VIR 398
Query: 394 QCEKHGMLVRVSGDN-IMMSPPFIMSPEEVDELISKYGKALKAT 436
+ + G+LV G+ I P ++ EE+D I +AL
Sbjct: 399 RLWEEGVLVLPCGERSIRFRPALTVTTEEIDAAIDALRRALPEV 442
|
Length = 443 |
| >gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 3e-20
Identities = 107/457 (23%), Positives = 174/457 (38%), Gaps = 75/457 (16%)
Query: 12 TDVHPLV--IEKSEGSYVYDVN-GKKYLDSLAGLWCTALGGSEPRLV--AAATAQLNTLP 66
TD LV +++S GS + D G++YLD + ALG + P LV A A+L
Sbjct: 14 TDGFDLVLDLDRSRGSVLVDARDGRRYLDMFSFFASMALGMNHPALVDDLAFRARLGAAA 73
Query: 67 FYHSFWNRTTKPS-LDLAKELLEMFTAS--------KMAKVFFTNSGSEA--NDTQVKLV 115
KPS D+ + F + + +FF G+ A N +
Sbjct: 74 V--------NKPSNSDVYTVAMARFVDTFARVLGDPALPHLFFIEGGALAVENALKTAFD 125
Query: 116 W--YYNNALGRPNKK--KFIARQKSYHGSTLIAASLSGL----PALHQKFDLPAPFVLHT 167
W +N A G P + + ++++HG + SL+ A KFD P
Sbjct: 126 WKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWP-----RI 180
Query: 168 DCPHYWRYAHPGETEEEYSTRLANNLEDL-----ILKEGPETIAAFIAEPVIGAGGVIPP 222
D P +A E L E P IA FIAEP+ G GG
Sbjct: 181 DNP----KLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHF 236
Query: 223 PATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPI 282
+ ++A+ ++D L I DEV G GT + + ++PD+V+F K +
Sbjct: 237 RPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVAFGKKTQ-----V 291
Query: 283 GAILVSPEVSEV---IHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVE---- 335
I+ V EV + + + L S T+ G+ V A L+I +E +V+
Sbjct: 292 CGIMAGRRVDEVADNVFAVPSRLNS-----TWGGNLVDMVRATRILEIIEEERLVDNARV 346
Query: 336 QVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQC 395
Q + + + F ++ RG GL+ + +E I +
Sbjct: 347 QGAHLLARLHELAAEFPH--LVSNPRGRGLMCAFDLPSTADRDEV------IRQLY---- 394
Query: 396 EKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKA 432
+ +L+ +I PP ++ EE+D I +
Sbjct: 395 REGVLLLGCGERSIRFRPPLTVTREEIDAAIDAIRRV 431
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. Length = 431 |
| >gnl|CDD|178100 PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 4e-20
Identities = 96/343 (27%), Positives = 152/343 (44%), Gaps = 50/343 (14%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTA-LGGSEPRLVAAATAQLNTLPFYHSFWNR 74
P+V ++ +GSY +DV+G +Y+D + G W A +G ++ ++AA + SF
Sbjct: 82 PIVFDRVKGSYAWDVDGNEYIDYV-GSWGPAIIGHADDEVLAALAETMKK---GTSF--- 134
Query: 75 TTKPSLDLAKELLEMFTAS--KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIA 132
P L L L EM + + V F NSG+EA ++L Y ++K I
Sbjct: 135 -GAPCL-LENVLAEMVIDAVPSVEMVRFVNSGTEACMGVLRLARAYTG------REKIIK 186
Query: 133 RQKSYHG---STLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189
+ YHG S L+ A SG+ L LP D P P T
Sbjct: 187 FEGCYHGHADSFLVKAG-SGVATL----GLP-------DSP-----GVPKAATSATLTAP 229
Query: 190 ANNLEDL--ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVI 247
N+LE + + + IAA I EPV+G G I P + E ++ + K+ L + DEV+
Sbjct: 230 YNDLEAVKKLFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVM 289
Query: 248 CAFGRLGTMFGC--DKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSF 305
F R+ +G + + I PDL + K + +P+GA E+ E++ G
Sbjct: 290 TGF-RIA--YGGAQEYFGITPDLTTLGKVIGGG-LPVGAYGGRREIMEMVAPA----GPM 341
Query: 306 SHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGV 348
T SG+P++ I LK ++ E ++KI K G+
Sbjct: 342 YQAGTLSGNPLAMTAGIHTLKRLQQPGTYEYLDKITKKLIQGI 384
|
Length = 474 |
| >gnl|CDD|215526 PLN02974, PLN02974, adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 1e-19
Identities = 92/366 (25%), Positives = 142/366 (38%), Gaps = 81/366 (22%)
Query: 78 PSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVW--YY-------NNALGRPNKK 128
P+L A+ LL ++VFF+++GS A + +K+ + + N+ +
Sbjct: 410 PALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGFLENSGNEKRGGD 469
Query: 129 ----KFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHY------------ 172
K +A SYHG TL A + P+ F P Y
Sbjct: 470 LIELKVLALDGSYHGDTLGA----------MEAQAPSVFTGFLQQPWYSGRGLFLDPPTV 519
Query: 173 ------WRYAHP----GETEEEY---------------STRLANNLEDLILKE------- 200
W + P E E ST LA I ++
Sbjct: 520 GMRNGRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEAS 579
Query: 201 -GPETIAAFIAEPVI-GAGG--VIPPPATYFEKV-QAVVKKYDILFIADEVICAFGRLGT 255
IAA I EPV+ GAGG +I P F++ V + I I DEV RLG
Sbjct: 580 AKNGHIAALIIEPVLHGAGGMLLIDP---LFQRALVQVCRSRKIPVIFDEVFTGLWRLGV 636
Query: 256 MFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHP 315
+ KPD+ +AK L+ +P+ A L + EV E S HG +Y+ HP
Sbjct: 637 ESAWELLGCKPDIACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALL-HGHSYTAHP 695
Query: 316 VSCAVAIEALKIYKE----RNIVEQVNKIAPKF-QDGVKAFSDSPIIGEIRGTGLILGTE 370
+ CA A +AL+ YK+ N++ +++ + ++ V+A S P + + G +L E
Sbjct: 696 MGCAAAAKALQWYKDPSTNPNLIPPGSRLRELWDEELVRAISSLPNVERVVSLGTVLALE 755
Query: 371 FADNKS 376
S
Sbjct: 756 LDAEGS 761
|
Length = 817 |
| >gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Score = 88.0 bits (218), Expect = 9e-19
Identities = 80/296 (27%), Positives = 130/296 (43%), Gaps = 50/296 (16%)
Query: 20 EKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTK-- 77
EKS G+Y+ DV+G + LD + + +G + P L+ AA + + NR
Sbjct: 45 EKSRGNYLVDVDGNRLLDLYSQISSIPIGYNNPALLKAAQSPEMA----TTLINRPALGN 100
Query: 78 -PSLDLAKELLE--MFTASK-MAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIAR 133
PS D AK L E + A K +V+ SGS+AN+ K + Y + R + F
Sbjct: 101 FPSKDWAKILKEGILKVAPKGQDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEE 160
Query: 134 Q---------------------KSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH- 171
+ ++HG + S + +H K D+PA D P
Sbjct: 161 ENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIH-KLDIPA-----FDWPQA 214
Query: 172 -YWRYAHPGE------TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPA 224
+ +P E +EE R +EDLI K+ + +AA I EP+ GG
Sbjct: 215 PFPSLKYPLEEHVKENAKEE--QRCLEEVEDLI-KKWHKPVAAIIVEPIQSEGGDNHASP 271
Query: 225 TYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIK--PDLVSFAKALSSA 278
+F K++ + KK+++ FI DEV G G + + +++ PD+V+F+K +A
Sbjct: 272 DFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVTFSKKFQTA 327
|
This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known eukaryotic examples of the enzyme. The degree of sequence difference between this set and known bacterial examples is greater than the distance between either set the most similar enzyme with distinct function, and so separate models are built for prokaryotic and eukaryotic sets. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 464 |
| >gnl|CDD|234803 PRK00615, PRK00615, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 1e-15
Identities = 82/361 (22%), Positives = 141/361 (39%), Gaps = 49/361 (13%)
Query: 11 STDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGG-SEPRLVAA--ATAQLNTLPF 67
S + P ++ + G D GK ++D G W + + G S P++ A A+ T
Sbjct: 31 SVGITPPIVSSASGDIFIDSLGKTFID-FCGSWGSLIHGHSHPKICDAIQQGAERGT--- 86
Query: 68 YHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNK 127
+ T++ + A+EL K+ F +SG+EA T V+L GR
Sbjct: 87 ---SYGLTSEQEILFAEELFSYLGLEDH-KIRFVSSGTEATMTAVRLA---RGITGRSII 139
Query: 128 KKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187
KF+ YHG L G+ D ++ TD H + P
Sbjct: 140 IKFLG---CYHGHADTL--LQGISFSETSLD-TLTHLVDTDLAHPLTLSLP--------- 184
Query: 188 RLANNL---EDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIAD 244
N+ + ++ G +A I EP+ GV+ P + E + ++ L I D
Sbjct: 185 --YNDFQIFQTVMNSLGHR-VAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMD 241
Query: 245 EVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGS 304
EV+ F R+ Y +KPD+ + K L +P A++ + + + G+
Sbjct: 242 EVVTGF-RVAQGGAAAIYHVKPDITVYGKILGGG-LPAAAVVAHKSIMDHLAP----EGT 295
Query: 305 FSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTG 364
T SG+P++ A ++ + +E+ Q++ + F SPI IR G
Sbjct: 296 IFQAGTLSGNPLAMAAGKASINLCREQGFYTQLSTLEQNFL--------SPIEEMIRSQG 347
Query: 365 L 365
Sbjct: 348 F 348
|
Length = 433 |
| >gnl|CDD|235917 PRK07046, PRK07046, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 3e-06
Identities = 78/337 (23%), Positives = 133/337 (39%), Gaps = 86/337 (25%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCT----ALGGSEPRLVAAATAQ-----LNT-L 65
PL + ++ G+ DV+G +Y D +C A+ G P VA A A+ L T L
Sbjct: 58 PLFVAEARGARFTDVDGHRYDD-----FCLGDTGAMFGHSPAPVARALAEQARRGLTTML 112
Query: 66 PFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNAL-GR 124
P ++ + + +EL F + + ++AN + V + A+ GR
Sbjct: 113 P---------SEDAAWVGEELARRF---GLPYWQVATTATDAN----RFVLRWARAVTGR 156
Query: 125 PNKKKFIARQKSYHGS---TLI------AASLSGLPALHQKFDLPAPFVLHTDCPHYWRY 175
P K + YHG+ + GL L Q DL A
Sbjct: 157 P---KILVFNGCYHGTVDDVFVDLVDGRPVQRPGL--LGQVHDLTA-------------- 197
Query: 176 AHPGETEEEYSTRLA--NNLEDL--ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 231
+TR+ N+L L L +G +AA +AEP + G++ P + E ++
Sbjct: 198 ----------TTRVVEFNDLAALEAALADG--DVAAVLAEPAMTNIGMVLPEPGFHEALR 245
Query: 232 AVVKKYDILFIADE--VICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSP 289
+ ++Y L + DE I + G G + ++PD + K ++ +P S
Sbjct: 246 ELTRRYGTLLVIDETHTISS-GPGGY---TRAHGLEPDFLVVGKPIAGG-VPCAVYGFSA 300
Query: 290 EVSEVIHS--QSNTLGSFSHGFTYSGHPVSCAVAIEA 324
E++E + S G G T S + ++ A A+ A
Sbjct: 301 ELAERAQAAKASAPPGHSGIGTTLSANALAMA-AMRA 336
|
Length = 453 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 36/147 (24%), Positives = 55/147 (37%), Gaps = 27/147 (18%)
Query: 191 NNLEDLI--LKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC 248
+ + L LKE E + G + EK+ + K+++IL + DE
Sbjct: 127 LDFDALEAALKEATEGNKVVLHTSPHNPTGTVATLEEL-EKLLDLAKEHNILLLVDE--- 182
Query: 249 AFGRLGTMFG-CDKYSIKPDL---------VSFAKALSSAYMPIGAILVSPEVSEVIHSQ 298
A+ G +FG D + + L SF+KA A +G IL + V
Sbjct: 183 AYA--GFVFGSLDAVATRALLAEGPNLLVVGSFSKAFGLAGWRVGYILGNAAV------- 233
Query: 299 SNTLGSFSHGFTYSGHPVSCAVAIEAL 325
+ L + F S H A A AL
Sbjct: 234 ISQLRKLARPFYSSTH--LQAAAAAAL 258
|
Length = 357 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.001
Identities = 33/172 (19%), Positives = 57/172 (33%), Gaps = 39/172 (22%)
Query: 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGS 140
+L ++L + K F SG+ AN+ + AL P + I +
Sbjct: 4 ELEEKLARLLQPG-NDKAVFVPSGTGANEAALL-------ALLGP-GDEVIVDANGHGSR 54
Query: 141 TLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE 200
+AA L+G P P + G LE+L +
Sbjct: 55 YWVAAELAGAK--------PVPVP-------VDDAGYGGLDVAI--------LEEL---K 88
Query: 201 GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252
+A + P +GGV+ P +++ + K+Y IL + D
Sbjct: 89 AKPNVALIVITPNTTSGGVLVPLK----EIRKIAKEYGILLLVDAASAGGAS 136
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 447 | |||
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 100.0 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 100.0 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 100.0 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 100.0 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 100.0 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 100.0 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 100.0 | |
| PRK06105 | 460 | aminotransferase; Provisional | 100.0 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 100.0 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 100.0 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 100.0 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 100.0 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 100.0 | |
| PRK07678 | 451 | aminotransferase; Validated | 100.0 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 100.0 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 100.0 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 100.0 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 100.0 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 100.0 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 100.0 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 100.0 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 100.0 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 100.0 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 100.0 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 100.0 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 100.0 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 100.0 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 100.0 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 100.0 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 100.0 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 100.0 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 100.0 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 100.0 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 100.0 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 100.0 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 100.0 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 100.0 | |
| PLN00144 | 382 | acetylornithine transaminase | 100.0 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 100.0 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 100.0 | |
| PRK07046 | 453 | aminotransferase; Validated | 100.0 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 100.0 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 100.0 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 100.0 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 100.0 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 100.0 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 100.0 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 100.0 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 100.0 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 100.0 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 100.0 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 100.0 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 100.0 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 100.0 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 100.0 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 100.0 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 100.0 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 100.0 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 100.0 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 100.0 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 100.0 | |
| PLN02822 | 481 | serine palmitoyltransferase | 100.0 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 100.0 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 100.0 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 100.0 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 100.0 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 100.0 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 100.0 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 100.0 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.98 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.97 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.97 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.97 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.97 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.97 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.96 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.96 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.96 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.95 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 99.94 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.94 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.93 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.93 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 99.92 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.92 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 99.91 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.91 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 99.91 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.91 | |
| PRK07324 | 373 | transaminase; Validated | 99.91 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.91 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.91 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.91 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.91 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.9 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.9 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.9 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.9 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.9 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.9 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.9 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.89 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.89 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.89 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.89 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.89 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.89 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.89 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.89 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 99.89 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.89 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.89 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.89 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.88 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.88 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.88 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.88 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.88 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.88 | |
| PLN02656 | 409 | tyrosine transaminase | 99.88 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.88 | |
| PLN02721 | 353 | threonine aldolase | 99.88 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.88 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.88 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.88 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.88 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.88 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.88 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.88 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.88 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.88 | |
| PLN02187 | 462 | rooty/superroot1 | 99.88 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.87 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.87 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.87 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.87 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.87 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.87 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.87 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.87 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.87 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.87 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.87 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.87 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.87 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.87 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.87 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.87 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 99.87 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.87 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.87 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 99.86 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.86 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.86 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.86 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.86 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.86 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.86 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.86 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.86 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.86 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.86 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.86 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.86 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.86 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.86 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.86 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.85 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.85 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.85 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.85 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.85 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.85 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.85 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.85 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.85 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.84 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.84 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.84 | |
| PLN02231 | 534 | alanine transaminase | 99.84 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.84 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.84 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.84 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.84 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.83 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.83 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.83 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 99.83 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.83 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.83 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.83 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.83 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.83 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.82 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.82 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.82 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.82 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.82 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 99.82 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.82 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 99.82 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.82 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 99.82 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.82 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.81 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.81 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.81 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.81 | |
| PLN02651 | 364 | cysteine desulfurase | 99.8 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.8 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.8 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.8 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.79 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 99.79 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.79 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.78 | |
| PLN02397 | 423 | aspartate transaminase | 99.78 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.77 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 99.77 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 99.77 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.76 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.76 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.76 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.76 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.75 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.75 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.75 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.74 | |
| PLN02368 | 407 | alanine transaminase | 99.73 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.73 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 99.72 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.72 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.72 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.71 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.71 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.71 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.71 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.7 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.7 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.68 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.68 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.68 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.67 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 99.67 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.66 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.66 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.65 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.65 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.64 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.63 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.63 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.63 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.63 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.62 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.61 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.61 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.6 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.6 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.6 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.59 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.59 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.59 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.59 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.59 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.58 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.58 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.58 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.58 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.57 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.57 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.57 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.57 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.56 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.56 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.55 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.55 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.55 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.55 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.53 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.53 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.52 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.52 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.52 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.52 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.52 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.51 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.51 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.5 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.5 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.5 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.5 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.5 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.5 | |
| PLN02263 | 470 | serine decarboxylase | 99.5 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.49 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.48 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.47 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.47 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.46 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 99.46 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.46 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.46 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.45 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.45 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.44 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.44 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.44 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.43 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.42 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.42 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.42 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.41 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.4 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.4 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 99.39 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.38 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.33 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.32 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.31 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.28 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.28 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.27 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.27 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.23 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.2 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.18 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.16 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.14 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.12 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.07 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.05 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.04 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 99.04 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.04 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.0 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.0 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.0 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 98.99 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 98.95 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 98.95 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 98.88 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 98.87 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 98.76 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 98.74 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 98.69 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 98.6 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 98.6 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 98.46 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 98.33 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 98.31 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 98.3 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 98.27 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 98.25 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.19 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 98.12 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 98.11 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 98.07 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 98.04 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 97.97 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 97.92 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 97.79 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 97.45 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 97.16 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 95.62 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 95.61 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 95.11 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 92.34 |
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-83 Score=604.03 Aligned_cols=432 Identities=41% Similarity=0.748 Sum_probs=397.4
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHH
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (447)
+||||+++...... |.++++++|.|++|.|||+|||.+|++|++++||+||+|.+|+.+|++++.+++. +...+.+..
T Consensus 13 ~whP~t~~~~~~~~-~~~i~~aeG~yl~d~~G~r~lDg~sg~W~~~~Gh~~~~i~~Ai~~Q~~~l~~~~~-~~~t~~Pa~ 90 (449)
T COG0161 13 LWHPFTQMRDPLAE-PRVIVRAEGVYLTDIDGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMF-GGFTHEPAI 90 (449)
T ss_pred eecccccccccccc-ceeeeecceeEEEeCCCCEEEecccHHHHhhcCcCCHHHHHHHHHHHHhCCchhh-cccCCchHH
Confidence 69999999988555 9999999999999999999999999999999999999999999999999887654 345777799
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcc-ccCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPA-LHQKFDL 159 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~-~~~~~~~ 159 (447)
+|+++|+++.++.++++|+|++|||+|||.|+|++++|++.+|+++++++|...++|||.+.++++++|... ++..+..
T Consensus 91 ~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ 170 (449)
T COG0161 91 ELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDP 170 (449)
T ss_pred HHHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhccc
Confidence 999999999865569999999999999999999999999999999999999999999999999999999544 4466677
Q ss_pred CCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCC-CCCccCChhHHHHHHHHHHhcC
Q 013204 160 PAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGA-GGVIPPPATYFEKVQAVVKKYD 238 (447)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~-~G~~~~~~~~l~~l~~l~~~~g 238 (447)
+.+...+++.|..|+.....+..+.+ ..++++||+++...++++++++|+||+.+. ||+++|++.||++++++|++||
T Consensus 171 ll~~~~~~~~P~~y~~~~~~~~~~~~-~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ 249 (449)
T COG0161 171 LLPEVLHLPAPYAYRRGFFGEGDEEF-AEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYG 249 (449)
T ss_pred cccCceecCCCcccccCCCCCChHHH-HHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcC
Confidence 77778899999888766666777777 788899999999999899999999998766 9999999999999999999999
Q ss_pred CEEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHH
Q 013204 239 ILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSC 318 (447)
Q Consensus 239 ~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 318 (447)
++||+|||.|||||+|+.|+++++++.||++|++|+++|||+|+|+++.++++.+.+.... .+.|.|+.||++||++|
T Consensus 250 ILlI~DEV~tGFGRTG~~FA~e~~gi~PDi~~~aKGLT~GY~Pl~a~l~~~~I~~~~~~~~--~~~f~HG~TYsghPlac 327 (449)
T COG0161 250 ILLIADEVATGFGRTGKMFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGD--AGAFMHGHTYSGNPLAC 327 (449)
T ss_pred cEEEeecceeCCCcCchhhhhhhcCCCCCeeeecccccccchhhHhHhhhHHHHHHHhccc--CCeeccCCccccCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998654 67899999999999999
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhh-ccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHH
Q 013204 319 AVAIEALKIYKERNIVEQVNKIAPKFQDGVKA-FSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEK 397 (447)
Q Consensus 319 ~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~-l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 397 (447)
++|++.|++++++++.+++++++.+|.+.|+. +.+++.+.++++.|++.++++..+..++.+| ..+....+...+++
T Consensus 328 AaAla~L~i~e~e~l~~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~iElv~d~~t~~~f--~~~~~~~~~~~~~e 405 (449)
T COG0161 328 AAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVADKATKTPF--EARVGARVRAAALE 405 (449)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcccCCcEEEeeccceEEEEEEecccccccch--hhhHHHHHHHHHHH
Confidence 99999999999999999999999999999998 5778999999999999999999988888777 44567778899999
Q ss_pred cCceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013204 398 HGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKATEER 439 (447)
Q Consensus 398 ~Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 439 (447)
+|++++|.|+.+-++||+++|++||+++++++.+++++..++
T Consensus 406 ~Gl~iRp~g~~i~~~PPliit~~eid~l~~~l~~al~~~~~~ 447 (449)
T COG0161 406 RGLLIRPLGDVIYLMPPLIITREEIDELVDALREALDETLAD 447 (449)
T ss_pred CCeEEeecCCEEEEcCCccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999876543
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-80 Score=615.82 Aligned_cols=447 Identities=90% Similarity=1.429 Sum_probs=395.8
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHH
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (447)
|||||++++......|+++++++|+++||.|||+||||++++|+.+|||+||+|++|+.++++++...+.++..++++..
T Consensus 57 ~~~p~~~~~~~~~~~p~~i~~~~G~~l~D~dG~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~~~~~~~~~~~~~~~~~ 136 (504)
T PLN02760 57 MLAPFTAGWQSTDLEPLVIEKSEGSYVYDINGKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPFYHSFWNRTTKPSL 136 (504)
T ss_pred cccCcccccccccCCCceEEeeeeeEEEECCCCEEEEcCcCHHhcccCCCCHHHHHHHHHHHhhccceecccccCcHHHH
Confidence 79999999988777899999999999999999999999999999999999999999999999987655544456889999
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP 160 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 160 (447)
+++++|.+.+.+.+.++++|++||+|||+.|||++|.|+..+|++++++||.++++|||++.+++++++.+.++..++.+
T Consensus 137 ~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~ 216 (504)
T PLN02760 137 DLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLP 216 (504)
T ss_pred HHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCC
Confidence 99999999875556679999999999999999999999877787778999999999999999999999887776677766
Q ss_pred CCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCE
Q 013204 161 APFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240 (447)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~ 240 (447)
...+.++++|+.+++..|....+.+...+.++|++++...+++++++||+||+++++|+++|+++||++|+++|++||++
T Consensus 217 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~l 296 (504)
T PLN02760 217 APFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDIL 296 (504)
T ss_pred CCCcEEeCCCcccccCCCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence 66677888888777666666666666667788998876555678999999999999999999999999999999999999
Q ss_pred EEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHH
Q 013204 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAV 320 (447)
Q Consensus 241 li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a 320 (447)
||+|||+|||||+|..|+++++|++||++|+||+++||++|+|++++++++++.+.......+.+.|++||++||++|++
T Consensus 297 LI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~lggG~~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aa 376 (504)
T PLN02760 297 FIADEVICAFGRLGTMFGCDKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAV 376 (504)
T ss_pred EEecchhhCCcccchhhHHHhcCCCCcEEEecccccCCccccceEeecHHHHhhhhcccccccCcccCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999889999999999999886432223356788999999999999
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCc
Q 013204 321 AIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGM 400 (447)
Q Consensus 321 a~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 400 (447)
++++|++++++++.+++++++++|++.|+++.+++++.+++|.|+++++++.++.....+++........+.+.|+++|+
T Consensus 377 ala~Le~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gv 456 (504)
T PLN02760 377 ALEALKIYKERNIPEHVNKIAPRFQDGIKAFSGSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGM 456 (504)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEeCceEEEEEEecCCcccccccchhHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999986678999999999999999976554444444333456678889999999
Q ss_pred eEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 013204 401 LVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKATEERVKELKSQQ 447 (447)
Q Consensus 401 ~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~~~~~~~~ 447 (447)
++.+.++.+||+||+++|++|||+++++|+++++++++++.++|||+
T Consensus 457 l~~~~g~~lrl~Ppl~it~eeid~~~~~l~~al~~~~~~~~~~~~~~ 503 (504)
T PLN02760 457 LVRVAGDNIMMSPPLIITPEEVDELISIYGKALKATEERVAELKSQK 503 (504)
T ss_pred EEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99988888999999999999999999999999999999999999985
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-79 Score=564.40 Aligned_cols=378 Identities=34% Similarity=0.596 Sum_probs=345.0
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
.++|+++++++|+|+||.+||+||||.+++++++|||+||++++++.++++++.+.+.. +.+++..+|++++++..+
T Consensus 22 ~~~~~~~~~G~G~~v~D~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~sn~--~~~~~~~~la~~L~~~s~- 98 (404)
T COG4992 22 GRLPVVIVRGEGAYVWDQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVSNL--FYNEPQAELAEKLVELSP- 98 (404)
T ss_pred CcCceeEEeccccEEECCCCCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhhcccc--cCChHHHHHHHHHHhhCc-
Confidence 55789999999999999999999999999999999999999999999999987665443 478899999999999962
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCc
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHY 172 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
..++|+|+|||+||||+|+|++|.+.. .+++.+||.|.++|||+|++++++++.+-|+++|.+..+.+.++|+-+
T Consensus 99 -~~d~vff~NSGaEA~EaAiKlARk~~~---~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfnD- 173 (404)
T COG4992 99 -FADRVFFCNSGAEANEAALKLARKYTG---DPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFND- 173 (404)
T ss_pred -cccEEEEcCCcHHHHHHHHHHHHHHcC---CCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCCC-
Confidence 589999999999999999999998853 245789999999999999999999999999999998888888888854
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc
Q 013204 173 WRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252 (447)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~ 252 (447)
++++++++. +++++||+||+|++||.++++++||+.++++|++||++||+||||||+||
T Consensus 174 -----------------i~al~~ai~----~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GR 232 (404)
T COG4992 174 -----------------IEALEAAID----EDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGR 232 (404)
T ss_pred -----------------HHHHHHHhc----cCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCc
Confidence 478888886 48999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhc
Q 013204 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERN 332 (447)
Q Consensus 253 ~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~ 332 (447)
+|+.|+++++++.|||++++|+|+|| +|+|+++.++.+.+.+. +..|++||.+||++|+++.++|+++.+++
T Consensus 233 TGk~fA~e~~gV~PDI~tlaK~LgGG-~PigA~la~~~~~~~~~-------~G~HgSTfGGNpLacAv~~a~l~~l~~e~ 304 (404)
T COG4992 233 TGKLFAYEHYGVEPDILTLAKALGGG-FPIGAMLATEEIASAFT-------PGDHGSTFGGNPLACAVALAVLEVLLEEG 304 (404)
T ss_pred cchHHHHHHhCCCCCEEEeeccccCC-ccceeeEEchhhhhcCC-------CCcccCCCCcCHHHHHHHHHHHHHHcchh
Confidence 99999999999999999999999999 89999999977677664 55899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEE
Q 013204 333 IVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIM 410 (447)
Q Consensus 333 ~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR 410 (447)
+.+++++++++|++.|+++ .+++++.+++|.|+|+++++..+. .+..+.+.|.++|+++-..+ +++|
T Consensus 305 ll~~v~~~g~~~~~~L~~l~~~~~~v~~vRG~GLmiGiel~~~~-----------~a~~~~~~~~~~gvL~~~a~~~ViR 373 (404)
T COG4992 305 LLENVREKGEYLLQRLRELKRRYPLVKEVRGRGLMIGIELKEPY-----------RARDIVRALREEGVLVLPAGPNVIR 373 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCceeeeecceeEEEEEecCcc-----------cHHHHHHHHHHCCeEEecCCCCeEE
Confidence 9999999999999999999 678899999999999999998753 14568899999999988765 6799
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 411 MSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 411 ~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
|.||+++++|+|++++++|+++++.+..
T Consensus 374 ~~PpL~i~~eei~~~~~~l~~~l~~~~~ 401 (404)
T COG4992 374 FLPPLVITEEEIDEALDALERALAAASA 401 (404)
T ss_pred ecCCccCCHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999987643
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-77 Score=570.72 Aligned_cols=403 Identities=34% Similarity=0.603 Sum_probs=355.0
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
.+|+++++++|+|+||.|||+||||.+++++.++||+||+|++|+.++++++.+.+... .+.++..+++|++.+.++..
T Consensus 37 ~~p~~~~ra~G~~l~DvdG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~h~~~~~-~~~e~~v~~ae~L~~~~p~~ 115 (447)
T COG0160 37 RFPLVIVRAEGAYLYDVDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHTHTRD-LYYEPYVELAEKLTALAPGS 115 (447)
T ss_pred cCcceEEecccCEEEeCCCCEEEEcccCcchhccCCCCHHHHHHHHHHHHHhhcccCCc-ccchhHHHHHHHHHHhCCcc
Confidence 68999999999999999999999999999999999999999999999998865433322 24489999999999998655
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcc-ccCCCCCCCCcceecCCCCc
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPA-LHQKFDLPAPFVLHTDCPHY 172 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 172 (447)
..++++|++||+||||+|||+++.+ +++..||.|.++|||.|.+++++++... +...+....+.+.++|+|+.
T Consensus 116 ~~~~~~f~~sGaeA~E~AiKiAr~~------Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~ 189 (447)
T COG0160 116 GLKKVFFGNSGAEAVEAAIKIARAY------TGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNP 189 (447)
T ss_pred cCCeEEecCCcHHHHHHHHHHHHHH------hCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCcc
Confidence 6789999999999999999999988 6789999999999999999999999754 44566766677899999998
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHh--hCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCC
Q 013204 173 WRYAHPGETEEEYSTRLANNLEDLILK--EGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250 (447)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~le~~l~~--~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~ 250 (447)
++.+..... +.......+.+++.+.. .++..+|++|+||+|++||.++||++||++++++|++||+++|+||||+||
T Consensus 190 yr~p~~~~~-~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~ 268 (447)
T COG0160 190 YRCPFGIGG-EECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGF 268 (447)
T ss_pred ccCcccCch-hhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 886544332 44444556777776554 356789999999999999999999999999999999999999999999999
Q ss_pred CccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh
Q 013204 251 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE 330 (447)
Q Consensus 251 g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~ 330 (447)
||+|+.|+++++|+.||++|+||++++| +|+|++++++++++.. ...+.+||.+||++|++++++|+++++
T Consensus 269 GRTG~~fa~E~~gv~PDivt~aK~ig~G-~Pl~avv~r~ei~~~~--------~g~~~~Tf~GNpva~Aaa~AvL~vie~ 339 (447)
T COG0160 269 GRTGKMFAFEHFGVEPDIVTLAKSLGGG-LPLSAVVGRAEIMDWP--------PGGHGGTFGGNPVACAAALAVLDVIEE 339 (447)
T ss_pred CccccchhhhhcCCCCCEEEecccccCC-CceeEEeccHHhcccC--------CcccCCCCCcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 8999999999999833 336778999999999999999999999
Q ss_pred hcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC---
Q 013204 331 RNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--- 406 (447)
Q Consensus 331 ~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g--- 406 (447)
+++.+++.++++++++.|.+| .+++.+.+++|.|+|+++++..+..+..+. ......+..+|+++|+++..+|
T Consensus 340 e~L~~~a~~~G~~l~~~L~~l~~~~~~IgdVRG~Glm~giE~v~d~~t~~p~---~~~~~~i~~~~~~~Glil~~~G~~~ 416 (447)
T COG0160 340 ENLLERAAELGEYLRDRLEELQEKHPLIGDVRGLGLMIGVELVKDRDTKEPD---AELAAKIVARAFERGLLLLTCGPHG 416 (447)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhcCceecccccceEEEEEEecCCCCCCCC---HHHHHHHHHHHHHcCCEEeccCCCC
Confidence 999999999999999999999 789999999999999999998765443322 2356779999999999998887
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 407 DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 407 ~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+++||.||+++++|++|+++++|+++++++
T Consensus 417 nviRi~PPL~is~e~~d~~l~il~~al~~~ 446 (447)
T COG0160 417 NVLRILPPLTISDEELDEGLDILEEALKEA 446 (447)
T ss_pred cEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 789999999999999999999999999764
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-76 Score=580.95 Aligned_cols=437 Identities=34% Similarity=0.670 Sum_probs=372.0
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHH
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (447)
+||||+++.......|+++++++|++|||.|||+||||.+++|+++|||+||+|.+|+.++++++.+.+...+..++...
T Consensus 10 ~w~p~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~ 89 (449)
T PRK07481 10 FWHPMAHPAEMKARPPIIIVRGDGVYVYDIDGKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEYYSTFDGTTHPRAI 89 (449)
T ss_pred ccCCcccccccccCCCceEEeccccEEEeCCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhccceecccccCCHHHH
Confidence 59999999988766899999999999999999999999999999999999999999999999986554333345789999
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP 160 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 160 (447)
+++++|++.+++.+.++++|++||+||++.|||++|.++..+|++++.+||.|+++|||++.+++++++.+.++..+...
T Consensus 90 ~lae~L~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~ 169 (449)
T PRK07481 90 ELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPL 169 (449)
T ss_pred HHHHHHHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCC
Confidence 99999999874445779999999999999999999999877777788999999999999999999988876666555544
Q ss_pred CCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCE
Q 013204 161 APFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240 (447)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~ 240 (447)
.+.+.+++.|+.++.++...+.+.+...+.+.+|+.+....++++++||+||+++++|.++|+++||++|+++|++||++
T Consensus 170 ~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~l 249 (449)
T PRK07481 170 LPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGIL 249 (449)
T ss_pred CCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCE
Confidence 45556666665444333222345555566677888886555678999999999999999999999999999999999999
Q ss_pred EEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHH
Q 013204 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAV 320 (447)
Q Consensus 241 li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a 320 (447)
||+|||+|||||+|..|+++++++.||++|+||+++||++|+|++++++++++.+.......+.+.|++||++||++|++
T Consensus 250 lI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aa 329 (449)
T PRK07481 250 LIADEVVTGFGRTGSWFGSRGWGVKPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAA 329 (449)
T ss_pred EEEeehhhCcCcCchhhHhhhcCCCCCEEEEeecccCCCcCceEEEEcHHHHHHHhccCccccccccCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999889999999999999886432112345788999999999999
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcC
Q 013204 321 AIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHG 399 (447)
Q Consensus 321 a~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 399 (447)
++++|++++++++.++++++++++++.|+++ .+++++.+++|.|+++++++..+.....++.........+...|+++|
T Consensus 330 a~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~G 409 (449)
T PRK07481 330 ALATLDIVVREDLPANAAKRGAYLLEGLQPLKERFELVGDVRGKGLMLALDLVADKATREPIDPSKGYANAVADVARENG 409 (449)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCeEEEeecceEEEEEecccccccCCCCchhHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999998 568999999999999999997543222222211224566888899999
Q ss_pred ceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 400 MLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 400 i~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
+++.+.++.+|++||+++|++|||+++++|++++++++
T Consensus 410 vl~~~~g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~ 447 (449)
T PRK07481 410 VLVRPSGTKIILSPPLVIQREDVDRIVDALDAGLSAVP 447 (449)
T ss_pred eEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 99998888899999999999999999999999997653
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-76 Score=580.62 Aligned_cols=438 Identities=42% Similarity=0.804 Sum_probs=375.2
Q ss_pred CCCCCCcCccCCC--CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChH
Q 013204 1 MLAPFTAGWQSTD--VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKP 78 (447)
Q Consensus 1 ~~~~~~~~~~~~~--~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~ 78 (447)
+|+|++++..... ..|+++++++|++|||.|||+||||.+++|+++|||+||+|.+|+.++++++.+.+......+++
T Consensus 16 ~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~~~~~~~~~~~~~~~ 95 (461)
T PRK07482 16 FFHPSTHLGDHARGELPGRIVEGGEGIRITDAQGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKELAYYHTYVGHGTEA 95 (461)
T ss_pred ccCCcccccccccccCCCeeEEeeeeeEEEECCCCEEEEcccchhhhcCCCCCHHHHHHHHHHHHhcCccccccccCCHH
Confidence 5999987754432 35899999999999999999999999999999999999999999999999875444333457899
Q ss_pred HHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCC
Q 013204 79 SLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFD 158 (447)
Q Consensus 79 ~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~ 158 (447)
..+++++|++..+ .+.++++|++|||||++.|||++|.++..+|.+++++||.|+++|||++.+++++++.+.++..++
T Consensus 96 ~~~lAe~L~~~~p-~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~ 174 (461)
T PRK07482 96 SITLSKRIIDRAP-AGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFD 174 (461)
T ss_pred HHHHHHHHHHhCC-CCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccC
Confidence 9999999999863 457899999999999999999999998777777889999999999999999999998877777777
Q ss_pred CCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcC
Q 013204 159 LPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYD 238 (447)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g 238 (447)
.+...+.++++|..++.+......+.+...+++.+++++....++++++||+||+++++|+++|+++|+++|+++|++||
T Consensus 175 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~g 254 (461)
T PRK07482 175 LPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYD 254 (461)
T ss_pred CCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhC
Confidence 77666777777765554333444556666778889998865556789999999999999999999999999999999999
Q ss_pred CEEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHH
Q 013204 239 ILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSC 318 (447)
Q Consensus 239 ~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 318 (447)
++||+|||+|||||+|+.|+++++|+.||++|+||+|+||++|+|++++++++++.+.......+.+.|++||++||++|
T Consensus 255 iLlI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~ 334 (461)
T PRK07482 255 ILLIADEVVTGFGRLGSMFGSDHYGIEPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICA 334 (461)
T ss_pred CEEEEeccccCCCcCcchhhHHhcCCCCCEEEEccccccCccccceeeecHHHHHHHhcccccCCccccCCCCCcCHHHH
Confidence 99999999999999999999999999999999999999997799999999999988864322234567889999999999
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHH
Q 013204 319 AVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEK 397 (447)
Q Consensus 319 ~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 397 (447)
++++++|++++++++.++++++++++++.|+++ .+++.+.+++|.|+++++++..+.....++.........+...|++
T Consensus 335 Aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~ 414 (461)
T PRK07482 335 AAALANLDILERENLVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALE 414 (461)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeeceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999988 7789999999999999999975433333333222235668889999
Q ss_pred cCceEEee--CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013204 398 HGMLVRVS--GDNIMMSPPFIMSPEEVDELISKYGKALKATEER 439 (447)
Q Consensus 398 ~Gi~~~~~--g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 439 (447)
+|+++.+. ++.+|+.||+++|++||++++++|+++++++.++
T Consensus 415 ~Gvl~~~~~~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~~~~ 458 (461)
T PRK07482 415 RGVIARAMPHGDILGFAPPLVLTRAEADEIVAIAKDAVDEVLGR 458 (461)
T ss_pred CCcEEecCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99998653 6789999999999999999999999999887443
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-75 Score=575.81 Aligned_cols=437 Identities=32% Similarity=0.621 Sum_probs=368.9
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHH
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (447)
+|+|++++.......|+++++++|+++||.|||+||||.+++|+.++||+||+|.+|+.++++++.+....+...+++..
T Consensus 14 ~~~~~~~~~~~~~~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~ 93 (459)
T PRK05965 14 LIHPVASYRGHEARGVTVLASAKGATLTDASGHQLLDAFAGLWCVNVGYGQESIVEAAAEQMRELPYATGYFHFGSEPAI 93 (459)
T ss_pred cccccccccccccCCCceEEeeeEeEEEECCCCEEEECcccHHhccCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHH
Confidence 58898877433234689999999999999999999999999999999999999999999999986554333345788999
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP 160 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 160 (447)
+|++++++.++ .+.++++|++||+|||+.|||++|.|+..+|++++.+||.++++|||++.++++.++.+.++..++.+
T Consensus 94 ~lae~L~~~~p-~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~ 172 (459)
T PRK05965 94 RLAAKLAERAP-GSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLP 172 (459)
T ss_pred HHHHHHHhhCC-CCcCEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCC
Confidence 99999999873 45789999999999999999999999877787788999999999999999999988877666666655
Q ss_pred CCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCE
Q 013204 161 APFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240 (447)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~ 240 (447)
......+++|..++.+.. .+.+.....+++++++.+....++++++||+||+++++|+++|+++||++|+++|++||++
T Consensus 173 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gil 251 (459)
T PRK05965 173 LPWQHKIPSPYPYRNPVG-DDPQAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGIL 251 (459)
T ss_pred CCCCEEcCCCcccccccC-CChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCE
Confidence 444556666654443221 2334455666788888887655578999999999999999999999999999999999999
Q ss_pred EEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHH
Q 013204 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAV 320 (447)
Q Consensus 241 li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a 320 (447)
||+|||+|||||+|+.|+++++|+.||++|+||+|+||++|+|++++++++++.+.......+.+.|++||++||++|++
T Consensus 252 lI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aa 331 (459)
T PRK05965 252 FVADEVITGFGRTGPLFACEAEGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAV 331 (459)
T ss_pred EEEechhccCccCchhhhHhhcCCCCCeEEechhhccCCcceeEEEEcHHHHHHHhccccccccccccCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999779999999999999886422112245688999999999999
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCc
Q 013204 321 AIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGM 400 (447)
Q Consensus 321 a~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 400 (447)
++++|++++++++.+++++++++|++.|+++.+++.+.+++|.|+++++++..+..+..++.........+.+.++++|+
T Consensus 332 a~a~L~~l~~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gl 411 (459)
T PRK05965 332 GLEVLRLYHEGGLLANGQKAGPRFAAGLDALRAHPLVGDVRGRGLLGALELVADKATKTPFDAALDPADRIFDRAYANGL 411 (459)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHhhccCCCEEEEeecceEEEEEEeccccccCCCCchhHHHHHHHHHHHhCCe
Confidence 99999999999999999999999999999986688999999999999999976443333322222345668889999999
Q ss_pred eEEeeC-CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013204 401 LVRVSG-DNIMMSPPFIMSPEEVDELISKYGKALKATEER 439 (447)
Q Consensus 401 ~~~~~g-~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 439 (447)
++.+.+ +.+|+.||+++|++||++++++|+++++++..+
T Consensus 412 l~~~~g~~~i~~~PpL~it~~ei~~~~~~l~~~l~~~~~~ 451 (459)
T PRK05965 412 VFRAFGDGVLGFAPALCCTEGEFDLIFERTRKTLDDVLAD 451 (459)
T ss_pred EEEecCCcEEEEECCCcCCHHHHHHHHHHHHHHHHHHhcC
Confidence 999876 569999999999999999999999999887543
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-74 Score=567.60 Aligned_cols=437 Identities=53% Similarity=0.965 Sum_probs=375.7
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHH
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (447)
+|+|+..........|+++++++|+++||.|||+||||.+++++++|||+||+|.+|+.++++++.+.+......++...
T Consensus 16 ~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~ 95 (460)
T PRK06105 16 HLHPYTNARRHEEEGPLVIERGEGIYVYDDAGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPFYHTFSHKSHGPVI 95 (460)
T ss_pred cccCCcccccccccCCceEEeeeEEEEEECCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHHhCCCeecccccCCHHHH
Confidence 48888765332334689999999999999999999999999999999999999999999999986654333234788899
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP 160 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 160 (447)
+++++|++.++ .+.++++|++||+|||+.|||+++.++..++.+++.+||.++++|||++.+++++++.+.++..++.+
T Consensus 96 ~lae~L~~~~p-~~~~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~ 174 (460)
T PRK06105 96 DLAEKLVAMAP-VPMSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLP 174 (460)
T ss_pred HHHHHHHHhCC-CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCC
Confidence 99999999973 45679999999999999999999988877776778999999999999999999988876666677766
Q ss_pred CCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCE
Q 013204 161 APFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240 (447)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~ 240 (447)
.+.+.++++|+.+++..+....+.+...+++++|+++...+++++++||+||+++++|+++++++||++|+++|++||++
T Consensus 175 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~l 254 (460)
T PRK06105 175 LDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDIL 254 (460)
T ss_pred CCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCe
Confidence 66777888887766655555556666777889999887655678999999999999999999999999999999999999
Q ss_pred EEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHH
Q 013204 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAV 320 (447)
Q Consensus 241 li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a 320 (447)
+|+|||+|||||+|+.|+++++++.||++++||+|+||++|+|++++++++++.+.......+.+.|++|+.+||++|++
T Consensus 255 lI~DEv~tG~GRtG~~f~~~~~~v~PDi~~~gK~lggG~~P~~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aa 334 (460)
T PRK06105 255 LVADEVICGFGRTGNMFGCETFGIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAV 334 (460)
T ss_pred EEEeccccCCCcCchhhhHHhcCCCCCeeeeecccccCcccceEEEEcHHHHHHHhcccccCcccccCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999789999999999999886432223345688999999999999
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCc
Q 013204 321 AIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGM 400 (447)
Q Consensus 321 a~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 400 (447)
++++|++++++++.+++++++++|++.|+++.+++.+.+++|.|+++++++..+..+..++.........+...++++|+
T Consensus 335 a~a~L~~i~~~~l~~~v~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~~Gv 414 (460)
T PRK06105 335 ALENLAIIEERDLVGNAAERGARLQARLRALADHPLVGEVRGVGLIAAVELVADKATKTPFEPPGKVGARANAAAHEHGV 414 (460)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecceEEEEEEecCcccCCCCCchhHHHHHHHHHHHHCCe
Confidence 99999999999999999999999999999996688999999999999999975443333332222234568888999999
Q ss_pred eEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 401 LVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 401 ~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
++.+.++.+||+||+++|++||++++++|++++++++.
T Consensus 415 l~~~~g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~~ 452 (460)
T PRK06105 415 ISRAMGDTLAFCPPLIITAAQVDEMVDRFGRALDDVAA 452 (460)
T ss_pred EEEecCCEEEEECCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 99988889999999999999999999999999988755
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-73 Score=562.54 Aligned_cols=436 Identities=36% Similarity=0.730 Sum_probs=370.2
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHH
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (447)
+|+||+++......+|+++++++|+++||.|||+||||.+++++.++||+||+|.+|+.++++++.+.+.+....+++..
T Consensus 19 ~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~ 98 (466)
T PRK07036 19 LLHPWHDFSSLGKEGSLVIVEAEGIYVTDADGRRYLDGIGGMWCVNVGYGREEMADAIADQARRLPYYTPFGDMTNAPAA 98 (466)
T ss_pred cccCccCccccccCCCceEEeCceeEEEECCCCEEEECcccHHhhcCCCCCHHHHHHHHHHHHhCcccccccccCCHHHH
Confidence 69999888666556799999999999999999999999999999999999999999999999886443332125788999
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP 160 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 160 (447)
++++++++.. +.+.++++|++||+||++.|||+++.++..+|.+++.+||.|+++|||++.++++.++.+.++..+...
T Consensus 99 ~lae~L~~~~-p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~ 177 (466)
T PRK07036 99 ELAAKLAELA-PGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYA 177 (466)
T ss_pred HHHHHHHHhC-CCCcCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCC
Confidence 9999999986 345679999999999999999999999877777778999999999999999999999877766666555
Q ss_pred CCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCE
Q 013204 161 APFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240 (447)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~ 240 (447)
...+.+++.|+.++.+. +...+.+...+++++++.+....++++++||+||+++++|+++|+++|+++|+++|++||++
T Consensus 178 ~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~l 256 (466)
T PRK07036 178 SDLVHHLSSPNPYRRPA-GMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDIL 256 (466)
T ss_pred CCCcEEecCCccccccc-CCChHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCE
Confidence 55556677766544322 22334555556677888776656688999999999999999999999999999999999999
Q ss_pred EEEehhhcCCCccccccccc-cCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHH
Q 013204 241 FIADEVICAFGRLGTMFGCD-KYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCA 319 (447)
Q Consensus 241 li~DEv~~g~g~~g~~~~~~-~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 319 (447)
+|+|||+|||||+|+.|+++ ++|+.||++++||+++||++|+|++++++++++.+.........+.+++||++||++|+
T Consensus 257 lI~DEV~tGfGRtG~~~~~~~~~gv~PDivt~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~a 336 (466)
T PRK07036 257 YISDEVVTGFGRLGHFFASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTYSGHPVACA 336 (466)
T ss_pred EEEeechhCCCcCchhhhhhhhcCCCCCEEEEccccccCccccEEEEEcHHHHHHHhcccCcCcccccCCCCCCCHHHHH
Confidence 99999999999999988888 78999999999999999978999999999999988632111113568889999999999
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcC
Q 013204 320 VAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHG 399 (447)
Q Consensus 320 aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 399 (447)
+++++|++++++++.+++++++++|++.|+++.+++.+.+++|.|+++++++..+.....++.........+.+.|+++|
T Consensus 337 aa~a~Le~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 416 (466)
T PRK07036 337 AALKNIEIMEREGLCEHVREVGPYFEERLASLRELPLVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQERG 416 (466)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccCCCEEEEEeeceEEEEEEccCccccCCCCchhHHHHHHHHHHHHCC
Confidence 99999999998999999999999999999988678899999999999999997654333333322234566888999999
Q ss_pred ceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 400 MLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 400 i~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
+++.+.++.+|++||+++|++|||+++++|+++++++.+
T Consensus 417 vl~~~~~~~~~l~Ppl~it~~~id~~~~~l~~al~~~~~ 455 (466)
T PRK07036 417 LLVRPLEHLCVLSPPLIITRAQIDEIVAILRAAIEETAD 455 (466)
T ss_pred cEEeecCCEEEEeCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 999988888999999999999999999999999988755
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-74 Score=519.10 Aligned_cols=408 Identities=41% Similarity=0.704 Sum_probs=369.7
Q ss_pred CCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHH
Q 013204 4 PFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLA 83 (447)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (447)
+++..|-.-...|++|.+++|+|++|.+|++|||+.+|.++.++||+||+|.+++.+++..+ +|..+.+.+++..+++
T Consensus 21 ~ls~~~~~~~~~Pl~Iv~~~~~ylyDe~G~ryLD~f~Gi~tvslGHchP~v~~a~~kQl~~l--~H~t~~~~~~pi~~~A 98 (442)
T KOG1404|consen 21 FLSPGLTSYYKKPLVIVRGEGQYLYDEEGRRYLDAFGGIVTVSLGHCHPDVVAAAVKQLKKL--YHTTSGYLNPPIHDLA 98 (442)
T ss_pred cCCcceeccccCCceEEecceEEEEcCCCceeehhhCCeEEEEcCCCChHHHHHHHHhhhhh--EEeeccccCCcHHHHH
Confidence 44445555566799999999999999999999999999999999999999999999999665 4555567889999999
Q ss_pred HHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCc
Q 013204 84 KELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPF 163 (447)
Q Consensus 84 ~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~ 163 (447)
++|.+.+ +.+++.++|+|||+|||+.|++++|.| ++..++|.+.++|||.+..++++++...++..+......
T Consensus 99 e~L~s~~-P~~l~~vfF~nsGsEANelal~mar~Y------t~~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~ 171 (442)
T KOG1404|consen 99 EALVSKL-PGDLKVVFFVNSGSEANELALKMARLY------TGNLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASG 171 (442)
T ss_pred HHHHHhC-CCCceEEEEecCCchHHHHHHHHHHHh------cCCceEEEeeccccCCchhhcccccCCcccccCCCCCCc
Confidence 9999998 567889999999999999999999999 567899999999999999999999998888777777678
Q ss_pred ceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEE
Q 013204 164 VLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIA 243 (447)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~ 243 (447)
..+..+|++++...++.+.+++.....+++++.+....+.++|++|+|++++.||++.++++||+++.++||++|.++|.
T Consensus 172 ~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~Ia 251 (442)
T KOG1404|consen 172 VHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIA 251 (442)
T ss_pred ccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEe
Confidence 89999999999999998888899999999999998888889999999999999999999999999999999999999999
Q ss_pred ehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHH
Q 013204 244 DEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIE 323 (447)
Q Consensus 244 DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a 323 (447)
|||||||||+|..|.++..++.|||+|++|++++| .|+|+++.++++++.+... ..+..||.+||++|+++++
T Consensus 252 DEVqtGfGRtG~~wgfe~h~v~PDIvTmAKgiGnG-~Pl~AVvtt~EIa~v~~~~------~~~fnTyggnP~a~avg~a 324 (442)
T KOG1404|consen 252 DEVQTGFGRTGHMWGFESHGVVPDIVTMAKGIGNG-FPLGAVVTTPEIADVLNQK------SSHFNTYGGNPVACAVGLA 324 (442)
T ss_pred hhhhhccccccccccccccCCCccHHHHHhhccCC-CcceeeecCHHHHHHHHhc------cccccccCCCchhHHHHHH
Confidence 99999999999999999999999999999999999 8999999999999999753 2377899999999999999
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceE
Q 013204 324 ALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLV 402 (447)
Q Consensus 324 ~l~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~ 402 (447)
+|++++++++.++..+.+.+|++.|.++ .+++++++++|.|+|+++++.++.. .+++........+.+.|+++|+++
T Consensus 325 VL~Vikee~LqE~aa~vG~yl~~~l~~l~d~h~iIGdVRG~GLm~GvE~V~dk~--~~~pp~~~~~~~i~~~cke~Gvlv 402 (442)
T KOG1404|consen 325 VLKVIKEENLQENAAEVGSYLLEKLAALKDKHPIIGDVRGRGLMLGVELVSDKS--EPKPPATAEGAVIGEQCKELGVLV 402 (442)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCceeecccceeEEEEEEecccC--CCCCcchHHHHHHHHHHHHhCeee
Confidence 9999999999999999999999999999 7799999999999999999988763 334444445677889999999999
Q ss_pred Eee---CCEEEEecCCCCCHHHHHHHHHHH
Q 013204 403 RVS---GDNIMMSPPFIMSPEEVDELISKY 429 (447)
Q Consensus 403 ~~~---g~~iR~~~~~~~t~e~i~~~~~~l 429 (447)
.-+ |+++||+||+++|+|||+.+++.+
T Consensus 403 g~g~i~G~vfriaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 403 GKGGIHGNVFRIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred ecccccceEEEecCCeeccHHHHHHHHHHH
Confidence 654 478999999999999997777765
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-73 Score=560.35 Aligned_cols=433 Identities=43% Similarity=0.789 Sum_probs=365.7
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHH
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (447)
+|+|++++.......|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.++++++.+....+...+++..
T Consensus 18 ~~~~~~~~~~~~~~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~ 97 (456)
T PRK07480 18 HLHPFSDMKALNEKGSRVITRAEGVYLWDSEGNKILDGMAGLWCVNVGYGRKELADAAARQMRELPYYNTFFKTTHPPAI 97 (456)
T ss_pred cccCcccccccccCCCceEEeceeeEEEeCCCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHH
Confidence 58888777444334689999999999999999999999999999999999999999999999987554333345789999
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP 160 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 160 (447)
++++++++.++ .+.++++|++||+||++.|||++|.++..+|++++.+||.+.++|||++.+++++++.+.++..++.+
T Consensus 98 ~lae~L~~~~p-~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~ 176 (456)
T PRK07480 98 ELAAKLAEVAP-PGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLP 176 (456)
T ss_pred HHHHHHHHhCC-CCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCC
Confidence 99999999973 45679999999999999999999999877787778999999999999999999988876555555544
Q ss_pred CCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCE
Q 013204 161 APFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240 (447)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~ 240 (447)
.+.+.++++|..++... ..+.+.+...+++.+++.+....++++++||+||+++++|+++|+++||++|+++|++||++
T Consensus 177 ~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~l 255 (456)
T PRK07480 177 IPGIVHIDQPYWFGEGG-DMTPEEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDIL 255 (456)
T ss_pred CCCCeecCCCccccccc-CCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCE
Confidence 45566677665544221 22344555555678877666555678999999999999999999999999999999999999
Q ss_pred EEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHH
Q 013204 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAV 320 (447)
Q Consensus 241 li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a 320 (447)
||+|||+|||||+|..|+++++|++||++++||+++||++|+|++++++++++.+... .+.+.+++||++||++|++
T Consensus 256 lI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~---~~~~~~~~T~~gnpl~~Aa 332 (456)
T PRK07480 256 LVADEVICGFGRTGEWFGSQHFGIKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEE---GGEFNHGFTYSGHPVAAAV 332 (456)
T ss_pred EEEechhhCCCcCcchhhhhhcCCCCCeeeeehhhccCCccceEEEEcHHHHHHHhcC---CCCcccCCCCCcCHHHHHH
Confidence 9999999999999999999999999999999999999978999999999999988421 1245688999999999999
Q ss_pred HHHHHHHHhhhcHHHHH-HHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcC
Q 013204 321 AIEALKIYKERNIVEQV-NKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHG 399 (447)
Q Consensus 321 a~a~l~~~~~~~~~~~~-~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 399 (447)
++++|++++++++.+++ ++++++|++.|+++.+++.+.+++|.|+++++++..+.....++.........+.+.|+++|
T Consensus 333 a~a~L~~l~~~~l~~~~~~~~g~~l~~~l~~l~~~~~i~~vrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 412 (456)
T PRK07480 333 ALANLRILRDEGIVERVRDDTGPYLQKRLRELADHPLVGEVRGVGLVGAIELVKDKATRERFEAGGGVGTICRDHCFANG 412 (456)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhhcCCCeeeEEeecceEEEEEeccccccccCcchhhHHHHHHHHHHHCC
Confidence 99999999999999999 59999999999988668889999999999999997543333333221123456778899999
Q ss_pred ceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 400 MLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 400 i~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
+++.+.++.+||+||+++|++|||+++++|++++.++++
T Consensus 413 ll~~~~~~~l~~~Ppl~it~~eid~~~~~l~~al~~~~~ 451 (456)
T PRK07480 413 LIMRAVGDRMIISPPLVITHAEIDELVEKARKALDATAA 451 (456)
T ss_pred cEEeecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999887888999999999999999999999999998766
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-73 Score=557.08 Aligned_cols=432 Identities=25% Similarity=0.513 Sum_probs=365.3
Q ss_pred CCCCCCcCccCCCCC-CeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHH
Q 013204 1 MLAPFTAGWQSTDVH-PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPS 79 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (447)
+|+||+++......+ |+++++++|+++||.|||+||||.+++|++++||+||+|.+|+.++++++...+. ....+++.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l~~~~~-~~~~~~~~ 109 (472)
T PRK08742 31 LWHPCTQMREHPHTLPLVPIARGEGAWLVGHDGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVML-AGFTHEPA 109 (472)
T ss_pred cccCCcccccccccCCCeeEEecccCEEEeCCCCEEEEcCccHHhccCCCCCHHHHHHHHHHHHhCCCccc-cccCCHHH
Confidence 599998876543333 4779999999999999999999999999999999999999999999987544332 24578889
Q ss_pred HHHHHHHHHhcCcC----CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccC
Q 013204 80 LDLAKELLEMFTAS----KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQ 155 (447)
Q Consensus 80 ~~l~~~l~~~~~~~----~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 155 (447)
.++++++++.++.. +.++++|++||+|||++|||++|.++..+|.+++.+||.|+++|||++.++++.++.+.++.
T Consensus 110 ~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~ 189 (472)
T PRK08742 110 VQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRR 189 (472)
T ss_pred HHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCccccc
Confidence 99999999987431 46799999999999999999999998777777789999999999999999999998776666
Q ss_pred CCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEcc-ccCCCCCccCChhHHHHHHHHH
Q 013204 156 KFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEP-VIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~ep-v~~~~G~~~~~~~~l~~l~~l~ 234 (447)
.+....+.+.++++|+.++... +...+.+...+++.+++.+.. .++++++||+|| +++++|+++|+++||++|+++|
T Consensus 190 ~~~p~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~l~~~~~~-~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc 267 (472)
T PRK08742 190 VYAPLLLESLFAPSPDAYLAEP-GQSAEDYALQAADALQALFEQ-SPGEICALILEPRLQCAGGMRMHHPAYLRRARELC 267 (472)
T ss_pred ccCCCCCCCEEeCCCCcccccc-CCCHHHHHHHHHHHHHHHHHh-CCCceEEEEEccccccCCCcccCCHHHHHHHHHHH
Confidence 6655555566777776554322 333344555667888888763 456899999999 6999999999999999999999
Q ss_pred HhcCCEEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCc
Q 013204 235 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGH 314 (447)
Q Consensus 235 ~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 314 (447)
++||++||+|||+|||||+|..|+++++|+.||++++||+|+||++|+|++++++++++.+.... ..+.+.|++||++|
T Consensus 268 ~~~gillI~DEV~TGfGRtG~~~a~e~~gv~PDiv~~gKgl~gG~~Plaav~~~~ei~~~~~~~~-~~~~~~h~~T~~gn 346 (472)
T PRK08742 268 DAHGAFLIADEIATGFGRTGTLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDS-RERAFLHSHSYTGN 346 (472)
T ss_pred HHcCCEEEEechhhCCCCCccchHHHhcCCCCCEEEEcccccCCCCCcceeeccHHHHHHhhccC-ccCccCcCCCCCcc
Confidence 99999999999999999999999999999999999999999999779999999999998875321 12355688999999
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHH
Q 013204 315 PVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQ 394 (447)
Q Consensus 315 ~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (447)
|++|++++++|++++++++.++++++++++++.++.+.+++.+.+++|.|+++++++..+..+..++.........+.+.
T Consensus 347 pl~~Aaa~a~L~~i~~~~l~~~~~~~g~~l~~~~~~~~~~~~i~dvRG~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~ 426 (472)
T PRK08742 347 PLACAAALATLDIFADDDVIARNQPTAARMTQLAAQIGEHPHVADVRQAGMVVAFELTRGGNKRTPFPPAARVGLHAYRA 426 (472)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEeccceEEEEEeccCccccccCCchhHHHHHHHHH
Confidence 99999999999999999999999999999998888776688999999999999999976543333333222234567788
Q ss_pred HHHcCceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 395 CEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 395 l~~~Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
++++|+++.+.|++|||.||+++|++||++++++|+++++++
T Consensus 427 ~~~~Gll~~~~g~vi~~~PpL~it~~ei~~~~~~l~~~l~~~ 468 (472)
T PRK08742 427 ALARGVVLRPLGDVLYWMPPYCVDEAQLALLADTTRHAIDEA 468 (472)
T ss_pred HHHCCeEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999988999999999999999999999999999875
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-72 Score=556.77 Aligned_cols=432 Identities=27% Similarity=0.554 Sum_probs=366.8
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHH
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (447)
+|+|++.........|+++++++|+++||.|||+||||.+++|+.+|||+||+|.+|+.++++++.+.+. ....+++..
T Consensus 15 ~~~~~~~~~~~~~~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~-~~~~~~~~~ 93 (466)
T PRK07030 15 LWHPCTQMKDHEQLPLIPIRRGEGVWLEDFEGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVIL-AGFSHEPVI 93 (466)
T ss_pred cccccccccccccCCCceEEeeeccEEEECCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHHhcCCccc-cccCCHHHH
Confidence 5888876643322235789999999999999999999999999999999999999999999988654332 245788999
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP 160 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 160 (447)
++++++++..+ .+.++++|++||+|||+.|||+++.++..+|.+++.+||.|.++|||++.++++.++.+.++..+...
T Consensus 94 ~lae~L~~~~p-~~~~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~ 172 (466)
T PRK07030 94 ELSERLVKITP-PGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPL 172 (466)
T ss_pred HHHHHHHHhCC-CCcCEEEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCcc
Confidence 99999999863 45679999999999999999999998777787788999999999999999999998877666666555
Q ss_pred CCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEcc-ccCCCCCccCChhHHHHHHHHHHhcCC
Q 013204 161 APFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEP-VIGAGGVIPPPATYFEKVQAVVKKYDI 239 (447)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~ep-v~~~~G~~~~~~~~l~~l~~l~~~~g~ 239 (447)
...+.++++|+.++... +...+.+..++++++++.+.. .++++++||+|| +++++|.++|+++|+++|+++|++||+
T Consensus 173 ~~~~~~~p~~~~~~~~~-~~~~~~~~~~~l~~le~~~~~-~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~ 250 (466)
T PRK07030 173 LLDTIKVPSPDCYLRPE-GMSWEEHSRRMFAHMEQTLAE-HHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGV 250 (466)
T ss_pred CCCCEEcCCCCcccccc-CCCHHHHHHHHHHHHHHHHHh-CCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCC
Confidence 45566777776554332 233455667778888888874 457899999999 799999999999999999999999999
Q ss_pred EEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHH
Q 013204 240 LFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCA 319 (447)
Q Consensus 240 ~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 319 (447)
++|+|||+|||||+|..|+++++++.||++++||+|+||++|+|++++++++++.+.......+.+.|++||++||++|+
T Consensus 251 llI~DEV~TGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~a 330 (466)
T PRK07030 251 HLIHDEIAVGFGRTGTMFACEQAGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACA 330 (466)
T ss_pred EEEEeehhhCcCccccchHHHhcCCCCCEEeeehhccCCcccceEEEecHHHHHHHhcccccccccccCCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999977999999999999988532222234578899999999999
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcC
Q 013204 320 VAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHG 399 (447)
Q Consensus 320 aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 399 (447)
+++++|++++++++.++++++++++++.|+++.+++.+.+++|.|+++++++..+.....++.........+.+.|+++|
T Consensus 331 aa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~G 410 (466)
T PRK07030 331 AALATLDIFEQDNVIENNRALARRMAEATAHLADHPHVAEVRQTGMILAIEMVQDKASKTPYPWQERRGLKVYQHALERG 410 (466)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCEEEeEeceeEEEEEeccCccccccCcchhHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999998667889999999999999997644333333222223356888999999
Q ss_pred ceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 400 MLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 400 i~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+++.+.++.+||.||+++|++||++++++|+++++++
T Consensus 411 vl~~~~g~~i~~~Ppl~it~~eid~~~~~l~~al~~~ 447 (466)
T PRK07030 411 ALLRPLGSVVYFLPPYVITPEQIDFLAEVASEGIDIA 447 (466)
T ss_pred eEEEecCCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 9999888899999999999999999999999999987
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-72 Score=551.80 Aligned_cols=425 Identities=24% Similarity=0.489 Sum_probs=361.6
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHH
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (447)
+|+|+++........|+++++++|+++||.|||+||||.+++|+.+|||+||+|.+|+.++++++.+... ....+++..
T Consensus 22 ~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~-~~~~~~~~~ 100 (453)
T PRK06943 22 VWHPCTQMKHHERLPLLPVARGEGAWLYDRDGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAML-AGCTHEPAI 100 (453)
T ss_pred cccCCcCccccccCCCceEEecccCEEEeCCCCEEEEcchHHHHhcCCCCCHHHHHHHHHHHHhcCCccc-cccCCHHHH
Confidence 5999987743332468999999999999999999999999999999999999999999999988654322 245788999
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP 160 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 160 (447)
++++++++..+ ...++++|++||+||++.|||+++.++..++.+++.+||.|+++|||++.+++++++...++..++..
T Consensus 101 ~lAe~L~~~~p-~~~~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~ 179 (453)
T PRK06943 101 ELAERLAALTG-GTLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPL 179 (453)
T ss_pred HHHHHHHHhCC-CCCCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccC
Confidence 99999999863 34579999999999999999999988776777788999999999999999999999987777766655
Q ss_pred CCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEcc-ccCCCCCccCChhHHHHHHHHHHhcCC
Q 013204 161 APFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEP-VIGAGGVIPPPATYFEKVQAVVKKYDI 239 (447)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~ep-v~~~~G~~~~~~~~l~~l~~l~~~~g~ 239 (447)
......+++|+..... .....+.+..++++++++++.. +++++++||+|| +++++|+++|+++||++|+++|++||+
T Consensus 180 ~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~l~~~l~~-~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gi 257 (453)
T PRK06943 180 IRHAHVVASPDARGAR-PGETAADVAARALADVRRLFAE-RAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGV 257 (453)
T ss_pred CCCCEEECCCCccccc-cCCCHHHHHHHHHHHHHHHHHh-CCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCC
Confidence 5555667776543322 2223345556777888888864 457899999999 599999999999999999999999999
Q ss_pred EEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHH
Q 013204 240 LFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCA 319 (447)
Q Consensus 240 ~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 319 (447)
+||+|||+|||||+|..|+++++|+.||++|+||+|+||++|+|++++++++++.+.... ..+.+.+++||++||++|+
T Consensus 258 llI~DEV~TG~GRtG~~fa~~~~gv~PDivt~gKgl~gG~~Pi~av~~~~ei~~~~~~~~-~~~~~~~~~T~~gnpl~~a 336 (453)
T PRK06943 258 HLIADEIAVGCGRTGTFFACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDD-VTRGFLHSHSYTGNPLACR 336 (453)
T ss_pred EEEeechhhCCCCCcchhHHHhCCCCCCeEeeehhhccCcccceEEEEcHHHHHhhcccC-ccCCccCCCCCCCCHHHHH
Confidence 999999999999999999999999999999999999999779999999999998885321 1123568899999999999
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcC
Q 013204 320 VAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHG 399 (447)
Q Consensus 320 aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 399 (447)
+++++|++++++++.+++++++++|++.|+++.+++.+.+++|.|+++++++..+..+. ......+.+.++++|
T Consensus 337 aa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~~~v~~vrG~Gl~~gvel~~~~~~~------~~~~~~i~~~~~~~G 410 (453)
T PRK06943 337 AALATLDLFAEDDVLARNARKSARLRAALAPLAAHPQVRHLRQRGTIFAFDVALDGDAA------RTFSRRFFEAALERE 410 (453)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCEEeEeccccEEEEEEccCCCcc------hHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999998557788899999999999997432111 113556888999999
Q ss_pred ceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 400 MLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 400 i~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+++.+.++.+||+||+++|++||++++++|+++++++
T Consensus 411 ll~~~~g~~l~~~Ppl~it~~eid~~~~~l~~al~~~ 447 (453)
T PRK06943 411 LLLRPIGTTVYLMPPYVLDDDEIAWLAERTRATLDAT 447 (453)
T ss_pred cEEEecCCEEEEeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 9999888889999999999999999999999999876
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-71 Score=550.72 Aligned_cols=433 Identities=36% Similarity=0.663 Sum_probs=360.8
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHH
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (447)
+|+||+++.......|+++++++|+++||.|||+||||.+++++.+|||+||+|.+|+.++++++.+.+......+++..
T Consensus 22 ~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~A~~~q~~~~~~~~~~~~~~~~~~~ 101 (460)
T PRK12403 22 HIHAFLDQKALNAEGPRVMVRGEGLHLWDNDGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYYNMFFHTTHPAVI 101 (460)
T ss_pred cccccccccccccCCCceEEeceeeEEEeCCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhCCCeecccccCCHHHH
Confidence 48999877433335689999999999999999999999999999999999999999999999986654433345788999
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP 160 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 160 (447)
++++++++.++ .+.++++|++||+|||+.|||+++.++..+|++++..|+.+.++|||++.+++++++...++. ....
T Consensus 102 ~lae~L~~~~p-~~~~~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~-~~~~ 179 (460)
T PRK12403 102 ELSELLFSLLP-GHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHE-MGGL 179 (460)
T ss_pred HHHHHHHHhCC-CCcCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccc-cCCC
Confidence 99999999973 346799999999999999999999987666766678889999999999999999988665443 2323
Q ss_pred CCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCE
Q 013204 161 APFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240 (447)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~ 240 (447)
.+.+.++++|..++.+. ....+.+...+++++++.+.+.+++++++||+||+++++|++.|+++||++|+++|++||++
T Consensus 180 ~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~l 258 (460)
T PRK12403 180 IPDVAHIDEPYWYANGG-ELTPAEFGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVL 258 (460)
T ss_pred CCCCEEeCCCccccccc-CCChHHHHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCE
Confidence 34456677665543221 11234556666678877776555578999999999999999999999999999999999999
Q ss_pred EEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHH
Q 013204 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAV 320 (447)
Q Consensus 241 li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a 320 (447)
||+|||++||||+|..|+++++|++||++|+||+|+||++|+|++++++++++.+... .+.+.+++||++||++|++
T Consensus 259 LI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~gK~lggG~~Piga~v~~~~i~~~~~~~---~~~~~~~~T~~gnPl~~Aa 335 (460)
T PRK12403 259 LCADEVIGGFGRTGEWFAHEHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQ---GGVFAHGLTYSGHPVAAAV 335 (460)
T ss_pred EEEeccccCCCcCchhhhhhhcCCCCCeEEEcccccccccceEEEEECHHHHHHHhcC---CCccccCCCCCCCHHHHHH
Confidence 9999999999999999999999999999999999999977999999999999888532 1245688899999999999
Q ss_pred HHHHHHHHhhhcHHHHHH-HHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc
Q 013204 321 AIEALKIYKERNIVEQVN-KIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH 398 (447)
Q Consensus 321 a~a~l~~~~~~~~~~~~~-~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 398 (447)
++++|++++++++.++++ ++++++++.|+++ .+++++.+++|.|+++++++..+.....++.........+...++++
T Consensus 336 ala~L~~i~~~~l~~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (460)
T PRK12403 336 AIANLKALRDEGVVTRVKDDTGPYLQRCLREVFGDHPLVGEVQGAGLVAALQFAEDKATRKRFANENDLAWRCRTIGFEE 415 (460)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCCCEEeEeecceEEEEEEccCccccccccchhHHHHHHHHHHHhC
Confidence 999999999888999996 9999999999887 67899999999999999999754333332222112234466778999
Q ss_pred CceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013204 399 GMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKATEER 439 (447)
Q Consensus 399 Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 439 (447)
|+++.+.++.+|++||+++|++||++++++|+++++++.++
T Consensus 416 Gll~~~~~~~~~l~Ppl~it~~eid~~~~~l~~al~~~~~~ 456 (460)
T PRK12403 416 GVIIRSTLGRMIMAPALVAGRAEIDELVDKTRIAVDRTARE 456 (460)
T ss_pred CEEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99998877789999999999999999999999999988654
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-72 Score=552.12 Aligned_cols=433 Identities=31% Similarity=0.585 Sum_probs=365.7
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHH
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (447)
.|+|++++.......|+++++++|++|||.|||+||||.+++|+++|||+||+|.+|+.++++++.+.+. ....+++..
T Consensus 24 ~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~-~~~~~~~~~ 102 (460)
T PRK06916 24 VWHPFTQMKDYLEEDPLIIERGEGRKLYDVNGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAHSTL-LGLANVPSI 102 (460)
T ss_pred cccccccccccccCCCeeEEeccccEEEeCCCCEEEEcchhHHHhhcCCCCHHHHHHHHHHHHhCCCccc-cccCCHHHH
Confidence 4888876532223569999999999999999999999999999999999999999999999998654332 245788999
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP 160 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 160 (447)
+++++|++.++ .+.++++|++||+|||+.|||+++.++..+|.+++.+||.|+++|||++.+++++++.+.++..+...
T Consensus 103 ~lae~L~~~~p-~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~ 181 (460)
T PRK06916 103 LLAEKLIEVVP-EGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSL 181 (460)
T ss_pred HHHHHHHHhCC-CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCC
Confidence 99999999873 45679999999999999999999998877777888999999999999999999999877766666554
Q ss_pred CCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEcc-ccCCCCCccCChhHHHHHHHHHHhcCC
Q 013204 161 APFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEP-VIGAGGVIPPPATYFEKVQAVVKKYDI 239 (447)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~ep-v~~~~G~~~~~~~~l~~l~~l~~~~g~ 239 (447)
......+++|+.++.+.. .+.+.+...+++++++.+.. .++++++||+|| +++++|+++|+++||++|+++|++||+
T Consensus 182 ~~~~~~~p~p~~~~~~~~-~~~~~~~~~~~~~l~~~l~~-~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~ 259 (460)
T PRK06916 182 LFEAIKMPYPYTYRSPYG-NDKAEIVKKHLEELEELLKE-KHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNV 259 (460)
T ss_pred CCCCEEeCCCcccccccC-CChHHHHHHHHHHHHHHHHh-CCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCC
Confidence 455566777765443221 23345556677888888864 457899999999 699999999999999999999999999
Q ss_pred EEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHH
Q 013204 240 LFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCA 319 (447)
Q Consensus 240 ~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 319 (447)
++|+|||++||||+|+.|+++++++.||++++||+|+||++|+|++++++++++.+.......+.+.+++||++||++|+
T Consensus 260 llI~DEV~TG~GRtG~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~a 339 (460)
T PRK06916 260 LFITDEVATGFGRTGKMFACEHENVTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCA 339 (460)
T ss_pred EEEeechhhCCCcCchhhHHHhcCCCCCeeeeehhhhcCccccceeeecHHHHHHhhccccccCccccCCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999977999999999999887532111234568889999999999
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcC
Q 013204 320 VAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHG 399 (447)
Q Consensus 320 aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 399 (447)
+++++|++++++++.++++++++++++.|+++.+++.+.+++|.|+++++++.++.....++.........+.+.|+++|
T Consensus 340 aa~a~l~~l~~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~G 419 (460)
T PRK06916 340 VALANLELYEKTNLIEQVARKTEYVATQLEDLFALKHVGDIRQLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSRELG 419 (460)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCCeEEeecCCceeeEEeecccccccCCCchhhHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999557888999999999999997654433333222223456888999999
Q ss_pred ceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 400 MLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 400 i~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
+++.+.++.+||.||+++|++||++++++|+++++++.
T Consensus 420 vl~~~~g~~l~~~Ppl~it~~~id~~~~~l~~~l~~~~ 457 (460)
T PRK06916 420 MLTRPLGNTIVFMPPLASTIDELDEMLRILYKAISDVT 457 (460)
T ss_pred eEEEecCCEEEEeCCcccCHHHHHHHHHHHHHHHHhhc
Confidence 99998888999999999999999999999999998753
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-71 Score=546.91 Aligned_cols=421 Identities=35% Similarity=0.663 Sum_probs=355.7
Q ss_pred CCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC
Q 013204 12 TDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT 91 (447)
Q Consensus 12 ~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (447)
...+|+++++++|++|||.|||+||||.+++|+++|||+||+|.+++.++++++.+.+.. ...++...+++++|++..+
T Consensus 9 ~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~~~~~~~~~-~~~~~~~~~lae~L~~~~p 87 (443)
T PRK07483 9 PRATLPVAVAGEGIYLIDATGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAYAHTS-FFTTEPAEALADRLVAAAP 87 (443)
T ss_pred ccCCCceEEeceEEEEEeCCCCEEEEcCccHhhhccCCCCHHHHHHHHHHHHhccCcccc-ccCCHHHHHHHHHHHHhCC
Confidence 344799999999999999999999999999999999999999999999999986543322 2467889999999999863
Q ss_pred cCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC
Q 013204 92 ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH 171 (447)
Q Consensus 92 ~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
.+.++++|++||+||++.|||++|.++..+|++++.+||.|+++|||++.++++.++.+.++..+....+.+.+++.+.
T Consensus 88 -~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~ 166 (443)
T PRK07483 88 -AGLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCY 166 (443)
T ss_pred -CCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCc
Confidence 4567999999999999999999999987777778899999999999999999999987665555544444455666554
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccC-CCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCC
Q 013204 172 YWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIG-AGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250 (447)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~-~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~ 250 (447)
.++........+.+...+++++++.+....++++++||+||+++ .+|.++|+++||++|+++|++||+++|+|||+|||
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf 246 (443)
T PRK07483 167 AYREQRAGESDEAYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGM 246 (443)
T ss_pred cccccccCCCHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCc
Confidence 44432223344556666678888877655567899999999998 57999999999999999999999999999999999
Q ss_pred CccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh
Q 013204 251 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE 330 (447)
Q Consensus 251 g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~ 330 (447)
||+|+.|++++++++||++|+||+++||+.|+|++++++++++.+... .+.+.|++||++||++|++++++|+++++
T Consensus 247 GRtG~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~---~~~~~h~~T~~gnpl~~aaa~a~l~~i~~ 323 (443)
T PRK07483 247 GRTGTLFACEEDGVAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADG---SGFFQHGHTYLGHATACAAALAVQRVIAE 323 (443)
T ss_pred ccCcHHHHHhhcCCCCCeeeehhhhccCccccEEEEEcHHHHHHHhcC---CCccccCCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999966999999999999888531 12356889999999999999999999999
Q ss_pred hcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee----
Q 013204 331 RNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS---- 405 (447)
Q Consensus 331 ~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---- 405 (447)
+++.+++++++++|++.|+++ .+++.+.+++|.|+++++++..+..+..++.........+.+.++++|+++.+.
T Consensus 324 ~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vRG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~ 403 (443)
T PRK07483 324 DGLLANVRARGEQLRARLRERLGQHPHVGDIRGRGLFVGVELVADRATKAPFDPALKLHARIKREAMARGLMVYPMGGTI 403 (443)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhcCCCeeeEeecccEEEEEEeecccccCCCCchhhHHHHHHHHHHHCCcEEEecCccc
Confidence 999999999999999999987 678889999999999999997654333333222234566889999999999764
Q ss_pred ----CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 406 ----GDNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 406 ----g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
++.+||.||+++|++|||+++++|++++.++.
T Consensus 404 ~~~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~~~ 439 (443)
T PRK07483 404 DGVRGDHVLLAPPFIITAAQIDEIVERLGDAIDAAL 439 (443)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999998754
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-71 Score=545.31 Aligned_cols=425 Identities=34% Similarity=0.646 Sum_probs=354.5
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHH
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (447)
+|+|++.... ..|+++++++|+++||.|||+||||.+++|+.+|||+||+|.+|+.++++++.+... ...+++..
T Consensus 18 ~~~~~~~~~~---~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~--~~~~~~~~ 92 (451)
T PRK07678 18 VWHGMKPYNP---NATMVVAKAEGAWVTDIQGNRYLDGMSGLWCVNVGYGRKELAEAAYEQLKTLSYFPL--TQSHEPAI 92 (451)
T ss_pred cCCCcccccc---CCCeeEEeeeeeEEEeCCCCEEEEccccHHhhcCCCCCHHHHHHHHHHHHhcCcccc--ccCCHHHH
Confidence 4777754433 258999999999999999999999999999999999999999999999988654322 34678899
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP 160 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 160 (447)
++++++++.++. .++++|++||+||++.|||++|.++..+|++++.+||.|+++|||++.++++.++.+.++..+...
T Consensus 93 ~lae~l~~~~~~--~~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~ 170 (451)
T PRK07678 93 KLAEKLNEWLGG--EYVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPL 170 (451)
T ss_pred HHHHHHHHhCCC--CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCC
Confidence 999999998742 358999999999999999999999877777788999999999999999999998876666555555
Q ss_pred CCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCE
Q 013204 161 APFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240 (447)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~ 240 (447)
.+.+.+++.|+.++.+.. ...+......++.+++++....++++++||+||+++++|+++|+++||++|+++|++||++
T Consensus 171 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~l 249 (451)
T PRK07678 171 APGFLHVPPPDCYRMPGI-ESEDIYDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGAL 249 (451)
T ss_pred CCCCEEeCCCcccccccc-CChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence 555666777665543221 1122233334566788786555678999999999999999999999999999999999999
Q ss_pred EEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHH
Q 013204 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAV 320 (447)
Q Consensus 241 li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a 320 (447)
||+|||+|||||+|..|+++++|++||++|+||+|+||++|+|++++++++++.+.... ..+.+.|++||++||++|++
T Consensus 250 lI~DEV~tGfGRtG~~~~~~~~gv~PDivt~gK~lggG~~Pi~av~~~~~i~~~~~~~~-~~~~~~h~~T~~gnp~~~aa 328 (451)
T PRK07678 250 LISDEVICGFGRTGKAFGFMNYGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKG-EYEHFRHVNTFGGNPAACAL 328 (451)
T ss_pred EEEeehhhcCCcCchhHHHHhcCCCCCEEEeecccccCCcceeEEEEcHHHHHHHhccC-cccccccCCCCCcCHHHHHH
Confidence 99999999999999999999999999999999999999789999999999998885321 11245688999999999999
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcC
Q 013204 321 AIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHG 399 (447)
Q Consensus 321 a~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 399 (447)
++++|++++++++.+++++++++|++.|+++ .+++.+.+++|.|+++++++..+.....+ .+......+...|+++|
T Consensus 329 a~a~l~~l~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~--~~~~~a~~i~~~l~~~G 406 (451)
T PRK07678 329 ALKNLEIMENENLIERSAQLGELLLEQLKEELGEHPLVGDIRGKGLLVGIELVNDKETKEP--ADNDKVASVVAACKEKG 406 (451)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeeceEEEEEEecCCcccCc--CchHHHHHHHHHHHHCC
Confidence 9999999998899999999999999999776 67888999999999999999754322111 11224566888999999
Q ss_pred ceEEeeC-------CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 400 MLVRVSG-------DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 400 i~~~~~g-------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+++.+.+ +.+||+||+++|++||++++++|++++.++
T Consensus 407 v~~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~~ 450 (451)
T PRK07678 407 LIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTALERI 450 (451)
T ss_pred cEEeecCccccCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence 9987642 679999999999999999999999999765
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-71 Score=544.05 Aligned_cols=419 Identities=32% Similarity=0.584 Sum_probs=350.6
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHH
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (447)
+|++|+.+. ..+|+++++++|+||||.|||+||||.+++|+++|||+||+|.+|+.++++++...+. ...+++..
T Consensus 24 ~~~~~~~~~---~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~--~~~~~~~~ 98 (451)
T PRK06062 24 VFHSWSAQG---KINPMVIAGAEGSYVWDYEGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLCTVAP--AHANDARS 98 (451)
T ss_pred ccccccccc---cCCCceEEeceeeEEEECCCCEEEEcccCHHhhcCCCCCHHHHHHHHHHHHhcCCcCC--ccCCHHHH
Confidence 477776542 3478999999999999999999999999999999999999999999999988654432 34788999
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP 160 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 160 (447)
+++++|++..+ .+.++|+|++||+||++.|||++|.+ +++++||.|+++|||++.++++.++.+..... ...
T Consensus 99 ~lae~L~~~~p-~~~~~v~f~~SGsEAve~AlklAr~~------tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~-~~~ 170 (451)
T PRK06062 99 EAARLIAERAP-GDLSKVFFTNGGADANEHAVRMARLH------TGRPKVLSAYRSYHGGTGSAINLTGDPRRWPN-DTG 170 (451)
T ss_pred HHHHHHHHhCC-CCCCEEEEcCChHHHHHHHHHHHHHh------hCCceEEEEeCCCCCCCHHHHhhcCCcccccC-CCC
Confidence 99999999863 45689999999999999999999988 56789999999999999999998876543322 222
Q ss_pred CCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCE
Q 013204 161 APFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240 (447)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~ 240 (447)
.+.+.+++.|..++.+....+.++....+++++++++...+++++++||+||+++++|+++|+++||++|+++|++||++
T Consensus 171 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~l 250 (451)
T PRK06062 171 RAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIV 250 (451)
T ss_pred CCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence 23344555555444333222334455566788999886554578999999999999999999999999999999999999
Q ss_pred EEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHH
Q 013204 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAV 320 (447)
Q Consensus 241 li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a 320 (447)
||+|||++||||+|..|+++++|+.||++|+||+|+||++|+|++++++++++.+.. ..+.+++||++||++|++
T Consensus 251 LI~DEV~tGfGRtG~~~a~~~~gv~PDi~t~gK~lggG~~Pigav~~~~~i~~~~~~-----~~~~~~~T~~gnpl~~Aa 325 (451)
T PRK06062 251 LIADEVMAGFGRTGKWFAIEHFGVVPDLITFAKGVNSGYVPLGGVAISEAIAATFAD-----RPYPGGLTYSGHPLACAA 325 (451)
T ss_pred EEeeccccCCCcCcHHHHHHhcCCCCCeeeechhhhcCCcCcEEEEEcHHHHHHhcc-----CCCCCCCCCCCCHHHHHH
Confidence 999999999999999999999999999999999999997899999999999998852 245677899999999999
Q ss_pred HHHHHHHHhhhcHHHHHHHHH-HHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCC---CcchHHHHHHHH
Q 013204 321 AIEALKIYKERNIVEQVNKIA-PKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPP---EWGIGAYFGAQC 395 (447)
Q Consensus 321 a~a~l~~~~~~~~~~~~~~~~-~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~l 395 (447)
++++|++++++++.+++++++ +++++.|+++ .+++.+.+++|.|+++++++..+.....++.. .......+.+.|
T Consensus 326 a~a~L~~l~~~~l~~~~~~~G~~~l~~~L~~l~~~~~~v~~vrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l 405 (451)
T PRK06062 326 AVATINAMEEEGIVENAARIGAEVLGPGLRELAERHPSVGEVRGLGVFWALELVADRETREPLAPYGASSAAMAAVKAAC 405 (451)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeEeccccEEEEEEcccccccCCCcccchhhHHHHHHHHHH
Confidence 999999999989999999999 6999999998 66788999999999999999754322222211 112356688899
Q ss_pred HHcCceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 396 EKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 396 ~~~Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
+++|+++.+.++.+||+||+.+|++|||+++++|++++++++
T Consensus 406 ~~~Gvl~~~~~~~lrl~ppl~~t~~eid~~~~~l~~~l~~~~ 447 (451)
T PRK06062 406 KERGLLPFVNGNRIHVVPPCTVTEDEVREGLAILDAALAVAD 447 (451)
T ss_pred HHCCcEEeecCCEEEEECCccCCHHHHHHHHHHHHHHHHHhh
Confidence 999999988778999999999999999999999999998765
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-70 Score=540.64 Aligned_cols=432 Identities=35% Similarity=0.676 Sum_probs=364.0
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHH
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (447)
+|+||++........|+++++++|+++||.|||+||||.+++|+++|||+||+|.+|+.++++++.+... +...++...
T Consensus 20 ~~~~~~~~~~~~~~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~~~~~~~-~~~~~~~~~ 98 (460)
T PRK06541 20 LWMHFTRHGAYIDAPVPVIVRGEGCYIWDDRGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAFFPL-WSYAHPPAI 98 (460)
T ss_pred cccCccCccccccCCCceEEeCcccEEEeCCCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhCcCccc-cccCCHHHH
Confidence 6999999965433347889999999999999999999999999999999999999999999988654332 245788999
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP 160 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 160 (447)
++++++++..+ .+.++++|++||+||++.|||+++.+++.+|++++.+||.|+++|||++.++++.++.+.++..+...
T Consensus 99 ~la~~l~~~~p-~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~ 177 (460)
T PRK06541 99 ELAERLAALAP-GDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPL 177 (460)
T ss_pred HHHHHHHHhCC-CCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCC
Confidence 99999999863 45679999999999999999999999877777778999999999999999999998877666666555
Q ss_pred CCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCE
Q 013204 161 APFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240 (447)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~ 240 (447)
.+.+.++++|+.++.+....+.+.+...+++.+++++...+++++++||+||+++++|.++++++||++|+++|++||++
T Consensus 178 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~l 257 (460)
T PRK06541 178 VPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVL 257 (460)
T ss_pred CCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCE
Confidence 56667777776554331122334455566788898887555678999999999999999999999999999999999999
Q ss_pred EEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHH
Q 013204 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAV 320 (447)
Q Consensus 241 li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a 320 (447)
+|+||||+||||+|..|+++++++.||++++||++++|++|+|++++++++++.+.... +.+.+++|+++||+++++
T Consensus 258 lI~DEV~tGfGR~G~~~a~~~~gv~PDivt~gK~l~~G~~pigav~~~~~i~~~~~~~~---~~~~~~~T~~gnp~~~aa 334 (460)
T PRK06541 258 LVSDEVICAFGRLGEMFGCERFGYVPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGP---TMFLHGYTFGGHPVSAAV 334 (460)
T ss_pred EEEechhhCCCcCchhhhhhhcCCCCCEEEecccccCCccceeEEEEcHHHHHHhhcCC---CccccCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999669999999999998886321 355678899999999999
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCC---cchHHHHHHHHHH
Q 013204 321 AIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPE---WGIGAYFGAQCEK 397 (447)
Q Consensus 321 a~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~l~~ 397 (447)
++++|++++++++.+++++++++|++.|+++..++++..+++.|++++++|..+..+..++... ......+...|++
T Consensus 335 ala~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 414 (460)
T PRK06541 335 ALANLDIFEREGLLDHVRDNEPAFRATLEKLLDLPIVGDVRGDGYFYGIELVKDKATKETFTDDESERLLRGFLSPALFE 414 (460)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHHh
Confidence 9999999988899999999999999999998557888899999999999997543333333221 0112357788999
Q ss_pred cCceEEee--C-CEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 398 HGMLVRVS--G-DNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 398 ~Gi~~~~~--g-~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
+|+++.+. + +.+||+||+++|++||++++++|++++.++.
T Consensus 415 ~Gi~~~~~~~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~~~ 457 (460)
T PRK06541 415 AGLYCRADDRGDPVVQLAPPLISGQEEFDEIEQILRSVLTEAW 457 (460)
T ss_pred CCeEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999863 3 6799999999999999999999999998754
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-69 Score=532.36 Aligned_cols=426 Identities=33% Similarity=0.592 Sum_probs=354.1
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHH
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (447)
.|+|++..... ...|+++++++|+++||.|||+||||.+++++.+|||+||+|.+|+.++++++.+.+. +...++...
T Consensus 15 ~~~~~~~~~~~-~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~-~~~~~~~~~ 92 (442)
T PRK13360 15 FWMPFTANRQF-KKAPRLLVAAKGMYYTTHDGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAPA-FQMGHPKAF 92 (442)
T ss_pred cccCccccccc-cCCCceEEeeeeeEEEeCCCCEEEECchhHHHhccCCCCHHHHHHHHHHHHhCCCccc-CCcCCHHHH
Confidence 48888765332 3468999999999999999999999999999999999999999999999988654433 245788899
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP 160 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 160 (447)
++++++++.++ .+.++++|++||+||++.|||+++.++..++++++.+||.|.++|||++.++++.++.+.++..+...
T Consensus 93 ~la~~l~~~~p-~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~ 171 (442)
T PRK13360 93 ELANRIAEIAP-GGLNHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGAL 171 (442)
T ss_pred HHHHHHHHhCC-CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCC
Confidence 99999999873 45679999999999999999999998766666667899999999999999999999877666655544
Q ss_pred CCcceecCCCCc-ccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCC
Q 013204 161 APFVLHTDCPHY-WRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDI 239 (447)
Q Consensus 161 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~ 239 (447)
.+...+++++.. .+.+.. ...+.+...++++|++++....++++++||+||+++++|.++|+++||++|+++|++||+
T Consensus 172 ~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~ 250 (442)
T PRK13360 172 LPGVDHLPHTLDLARNAFS-KGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGI 250 (442)
T ss_pred CCCCEEeCCCchhhccccC-CChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCC
Confidence 444555555431 221111 112344455678889888765557899999999999999999999999999999999999
Q ss_pred EEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHH
Q 013204 240 LFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCA 319 (447)
Q Consensus 240 ~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 319 (447)
+||+|||||||||+|..|+++++++.||++++||+++||++|+|++++++++++.+.........+.+++||+++|++|+
T Consensus 251 llI~DEv~tG~GrtG~~~a~~~~gv~PDivt~gK~l~gG~~P~gav~~~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~a 330 (442)
T PRK13360 251 LLIFDEVITGFGRLGAPFAAQYFGVTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACA 330 (442)
T ss_pred EEEEechhhCCCCCccchhhhhcCCCCceeeeeeccccCccceEEEEEcHHHHHHhhcCCccccccccCCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999988999999999999888642111112457789999999999
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcC
Q 013204 320 VAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHG 399 (447)
Q Consensus 320 aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 399 (447)
+++++|++++++++.++++++++++++.|+++.+++.+.+++|.|++.++.+....... ......+...|+++|
T Consensus 331 aa~a~L~~l~~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~~~~l~~~~~~~------~~~~~~~~~~l~~~G 404 (442)
T PRK13360 331 AALATLDLYEREGLLTRAARLAPYWEDALHSLRDAPHVIDIRNLGLVGAVELAPRDGKP------GKRAYEVFLKCFEKG 404 (442)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEEecCCCCc------chhHHHHHHHHHHCC
Confidence 99999999998899999999999999999988557788899999999998886432111 012445778899999
Q ss_pred ceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 400 MLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 400 i~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
|++...++.+||+||+++|++|||+++++|+++++++
T Consensus 405 vl~~~~~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~ 441 (442)
T PRK13360 405 LMIRYTGDILALSPPLIIEEAQIDELFDILAQALKET 441 (442)
T ss_pred cEEEecCCEEEEeCCCccCHHHHHHHHHHHHHHHHHh
Confidence 9999888899999999999999999999999999764
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-69 Score=532.78 Aligned_cols=426 Identities=35% Similarity=0.626 Sum_probs=355.3
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHH
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (447)
.|+||+++... .+.|+++++++|+++||.|||+||||.+++|+.+|||+||+|.+++.++++++.+.+. +...++...
T Consensus 18 ~~~~~~~~~~~-~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~-~~~~~~~~~ 95 (445)
T PRK09221 18 HWMPFTANRQF-KAAPRLLVSAEGMYYTDADGRKILDGTAGLWCCNAGHGRPEIVEAVARQAATLDYAPA-FQMGHPLAF 95 (445)
T ss_pred cccCccccccc-CCCCceEEeccccEEEeCCCCEEEEccccHhhccCCCCCHHHHHHHHHHHHhccCccc-cccCCHHHH
Confidence 49999765332 3468999999999999999999999999999999999999999999999988654433 245788899
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP 160 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 160 (447)
+++++|++.++ .+.++|+|++||+||++.|||+++.++..+|++++.+||.|.++|||.+.++++.++.+.++..+...
T Consensus 96 ~la~~L~~~~p-~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~ 174 (445)
T PRK09221 96 ELAERLAELAP-GGLDHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGL 174 (445)
T ss_pred HHHHHHHHhCC-CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCC
Confidence 99999999873 45679999999999999999999999877776678899999999999999999998876666555444
Q ss_pred CCcceecCCCC-cccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCC
Q 013204 161 APFVLHTDCPH-YWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDI 239 (447)
Q Consensus 161 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~ 239 (447)
.+.+.+++++. .++.+.. ...+.+...+.+++++++...+++++++||+||+++++|.+.|+++||++|+++|++||+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~ 253 (445)
T PRK09221 175 LPGVDHLPHTLDLPENAFS-KGQPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGI 253 (445)
T ss_pred CCCCeEeCCCccccccccC-CChHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCC
Confidence 44455565543 2221111 112334445567888888765557899999999999999999999999999999999999
Q ss_pred EEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHH
Q 013204 240 LFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCA 319 (447)
Q Consensus 240 ~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 319 (447)
++|+||||+||||+|..|+++++++.||++++||+++||++|+|++++++++++.+.........+.+++||+++|++++
T Consensus 254 llI~DEV~tG~GRtG~~~~~~~~gv~PDi~~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~a 333 (445)
T PRK09221 254 LLIFDEVITGFGRLGAAFAAERFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACA 333 (445)
T ss_pred EEEEeehhhCCCcCchhhHHHhcCCCCCEEEeccccccCcccceeeEEcHHHHHhhccCcccccccccccCCCcCHHHHH
Confidence 99999999999999999999999999999999999999988999999999999987532111123457789999999999
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcC
Q 013204 320 VAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHG 399 (447)
Q Consensus 320 aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 399 (447)
+++++|++++++++.++++++++++++.|+++.+++.+.++++.|++.++++....... ......+.+.|+++|
T Consensus 334 aa~a~L~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrg~Gl~~~v~~~~~~~~~------~~~~~~~~~~~~~~G 407 (445)
T PRK09221 334 AGLATLDIYREEDLFERAAELAPYFEDAVHSLKGLPHVIDIRNIGLVAGIELAPRPGAP------GARGYEAFMKCFEKG 407 (445)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhccCCCEEEEecCceEEEEEEecccccc------cchHHHHHHHHHHCC
Confidence 99999999988899999999999999999998667888899999999999987532110 012345778899999
Q ss_pred ceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 400 MLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 400 i~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+++...++.+||+||+++|++||++++++|++++.++
T Consensus 408 v~~~~~~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~ 444 (445)
T PRK09221 408 LLVRYTGDTIALSPPLIIEKAQIDELVDALGDALRAV 444 (445)
T ss_pred eEEeecCCEEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence 9998888899999999999999999999999999764
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-69 Score=530.40 Aligned_cols=419 Identities=33% Similarity=0.564 Sum_probs=350.7
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
.++| ++++++|+++||.|||+||||.+++|+.+|||+||+|.+|+.++++++.+.+. ....+++..+++++|++.++
T Consensus 12 ~~~p-~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~Ai~~ql~~~~~~~~-~~~~~~~~~~lae~L~~~~p- 88 (447)
T PRK06917 12 QPYP-VISHGKGVYLYDQNGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEVSFVYR-SQFTSEPAEKLAKKLSDLSP- 88 (447)
T ss_pred CCCC-eEEeeeeeEEEeCCCCEEEECchhHHhccCCCCCHHHHHHHHHHHhhCcCccc-cccCCHHHHHHHHHHHHhCC-
Confidence 3566 59999999999999999999999999999999999999999999988643322 13467889999999999874
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCc
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHY 172 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
...++++|++|||||++.|||++++++..++.+++.+||.|+++|||++.++++.++...++..+......+..++.|..
T Consensus 89 ~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~ 168 (447)
T PRK06917 89 GDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYC 168 (447)
T ss_pred CCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcc
Confidence 34579999999999999999999999877788889999999999999999999888766555444433333344444443
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCC-CCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCC
Q 013204 173 WRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGA-GGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG 251 (447)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~-~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g 251 (447)
++.+.. .+.+.+..++++.+++++....++++++||+||++++ ||+++|+++|+++|+++|++||+++|+|||++|||
T Consensus 169 ~~~~~~-~~~~~~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfG 247 (447)
T PRK06917 169 YRCPVQ-KVYPTCQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLG 247 (447)
T ss_pred cccccC-CChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcC
Confidence 332221 2234555667788888887655568999999999984 67999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh
Q 013204 252 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER 331 (447)
Q Consensus 252 ~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~ 331 (447)
|+|..|+++++++.||++++||+++||++|+|++++++++++.+... .+.+.+++||++||++|++++++|++++++
T Consensus 248 RtG~~~a~~~~gv~PDi~~~gK~l~~G~~Pi~a~~~~~~i~~~~~~~---~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~ 324 (447)
T PRK06917 248 RTGAMFAMEHWGVEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILRG---SRSIMSGHTLSANPLSAATALAVLEYMEKH 324 (447)
T ss_pred cccchhhHHhcCCCCCEEEeeehhccCCcceEEEEEcHHHHHHHhcc---CcccccccCCCCCHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999977999999999999988632 124567789999999999999999999988
Q ss_pred cHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-----
Q 013204 332 NIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS----- 405 (447)
Q Consensus 332 ~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----- 405 (447)
++.+++++++++|++.|+++ .+++.+.+++|.|++++++|..+.....++.........+.+.|+++|+++.+.
T Consensus 325 ~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~ 404 (447)
T PRK06917 325 NLPEKAAEKGEYLIKGLQKVQQQSTIIGDVRGKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQD 404 (447)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhCCcEEEecccccC
Confidence 99999999999999999998 568999999999999999997544333333322234667889999999999865
Q ss_pred ---CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 406 ---GDNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 406 ---g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
++.+|++||+++|++||++++++|+++++++.+
T Consensus 405 g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~~ 440 (447)
T PRK06917 405 GKEGDAVIIAPPMTITYSELDELLSIFAKSVEEMMQ 440 (447)
T ss_pred CCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999988743
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-68 Score=519.73 Aligned_cols=410 Identities=29% Similarity=0.517 Sum_probs=347.1
Q ss_pred CCCCCCcCccCCCCCC-eEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHH
Q 013204 1 MLAPFTAGWQSTDVHP-LVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPS 79 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (447)
+|+||.+... .+| +++++++|+++||.|||+||||.+++|+.+|||+||+|.+|+.++++++.+.. .....+++.
T Consensus 14 ~~~~~~~~~~---~~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~-~~~~~~~~~ 89 (429)
T PRK06173 14 IWHPYSSVTD---PIPVYPVERADGVMITLKDGRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMSHIM-FGGFTHEPA 89 (429)
T ss_pred cccccccccc---cCCCceEEeceeeEEEcCCCCEEEEccchHHhccCCCCCHHHHHHHHHHHHhcCCcc-ccccCCHHH
Confidence 4788766532 344 46999999999999999999999999999999999999999999998865432 123478899
Q ss_pred HHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCC-ccccCCCC
Q 013204 80 LDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGL-PALHQKFD 158 (447)
Q Consensus 80 ~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~-~~~~~~~~ 158 (447)
.+|++++++.++ .+.++++|++||+||+++|||+++.++..+|++++.+||.+.++|||.+.+++++++. +.++..+.
T Consensus 90 ~~lae~L~~~~p-~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~ 168 (429)
T PRK06173 90 VELAQKLLEILP-PSLNKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFN 168 (429)
T ss_pred HHHHHHHHhhCC-CCcCEEEEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhccc
Confidence 999999999873 4578999999999999999999999987778778899999999999999999988764 33444444
Q ss_pred CCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccc-cCCCCCccCChhHHHHHHHHHHhc
Q 013204 159 LPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPV-IGAGGVIPPPATYFEKVQAVVKKY 237 (447)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv-~~~~G~~~~~~~~l~~l~~l~~~~ 237 (447)
...+...++++|+... .+.+...+++.+++.+.. .++++++||+||+ +++||.++|+++|+++|+++|++|
T Consensus 169 ~~~~~~~~~~~p~~~~-------~~~~~~~~l~~l~~~i~~-~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~ 240 (429)
T PRK06173 169 HSLPVQYFLPQPSIKF-------GEEWNDEAIEPLQDLLEQ-KGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQY 240 (429)
T ss_pred ccCCCCeEeCCCCccc-------chhHHHHHHHHHHHHHHh-CCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHc
Confidence 3334445555554210 133455567888888864 3468999999997 999999999999999999999999
Q ss_pred CCEEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHH
Q 013204 238 DILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVS 317 (447)
Q Consensus 238 g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 317 (447)
|++||+||||+||||+|..|+++++++.||++++||+++||++|++.+++++++++.+... ..+.+.+++||.++|++
T Consensus 241 g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~gK~l~gG~~p~~a~~~~~~i~~~~~~~--~~~~~~~~~T~~g~p~~ 318 (429)
T PRK06173 241 GVLLIFDEIATGFGRTGKLFALEHAGVVPDIMCIGKALTGGYLTLSATITTEAIAQTICSG--EAKCFMHGPTFMANPLA 318 (429)
T ss_pred CCeEEecchhcCCCcCCcchHHHhcCCCCCEEEeehhhhCCccccceEEecHHHHHHHhcC--CCCccccCCCCCcCHHH
Confidence 9999999999999999999999999999999999999999978999999999999988531 12245788899999999
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHH
Q 013204 318 CAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEK 397 (447)
Q Consensus 318 ~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 397 (447)
|++++++|++++++++.+++++++++|++.|+++.+++.+.++++.|+++++.+.++. ....+.+.|++
T Consensus 319 ~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L~~~~~~~~v~~vRg~Gl~~~iel~~~~-----------~~~~i~~~l~e 387 (429)
T PRK06173 319 CAIAAESIRLLLESPWQQNIQRIEAQLKQELAPAAEFDSVAEVRVLGAIGVVEMKEPV-----------NMATLQPRFVE 387 (429)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEeCCcc-----------cHHHHHHHHHH
Confidence 9999999999998889999999999999999887557778889999999999996532 13457889999
Q ss_pred cCceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 398 HGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 398 ~Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+|+++.+.++.|||.||+++|++||++++++|++++.++
T Consensus 388 ~Gi~v~~~g~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~ 426 (429)
T PRK06173 388 HGIWVRPFGKLVYIMPPFIISPDELSQLTSGLLRVLKQE 426 (429)
T ss_pred CCeEEEecCCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence 999999988899999999999999999999999999764
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-68 Score=518.54 Aligned_cols=409 Identities=27% Similarity=0.489 Sum_probs=344.6
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHH
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (447)
+|+|++++.. ...|+++++++|+++||.|||+||||.+++|+++|||+||+|.+|+.++++++.+.. .....+++..
T Consensus 13 ~~~~~~~~~~--~~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~-~~~~~~~~~~ 89 (428)
T PRK07986 13 IWHPYTSMTS--PLPVYPVVSAEGCELILADGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVM-FGGITHPPAI 89 (428)
T ss_pred cccCCccccc--CCCCeeEEeeeeeEEEeCCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHhhcCCcc-ccccCCHHHH
Confidence 4888876653 223478999999999999999999999999999999999999999999998865432 1134788899
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCC-ccccCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGL-PALHQKFDL 159 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~-~~~~~~~~~ 159 (447)
++++++++..+ .+.++++|++||+||++.|||+++.++..+| +++.+||.|+++|||.+.+++++++. ..++..+..
T Consensus 90 ~la~~L~~~~p-~~~~~v~f~~SGsEAve~AlklAr~~~~~~g-~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~ 167 (428)
T PRK07986 90 ELCRKLVAMTP-QPLECVFLADSGSVAVEVAMKMALQYWQAKG-EPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKG 167 (428)
T ss_pred HHHHHHHhhCC-CCcCEEEEeCCcHHHHHHHHHHHHHHHHhcC-CCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCC
Confidence 99999999873 4568999999999999999999999876555 45789999999999999999988764 234444443
Q ss_pred CCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccc-cCCCCCccCChhHHHHHHHHHHhcC
Q 013204 160 PAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPV-IGAGGVIPPPATYFEKVQAVVKKYD 238 (447)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv-~~~~G~~~~~~~~l~~l~~l~~~~g 238 (447)
..+...+++.|... ..+.+.+++++++++.+... ++++++||+||+ ++.+|+++|+++||++|+++|++||
T Consensus 168 ~~~~~~~~~~p~~~-------~~~~~~~~d~~~l~~~l~~~-~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g 239 (428)
T PRK07986 168 YLPENLFAPAPQSR-------FDGEWDERDIAPFARLMAAH-RHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREG 239 (428)
T ss_pred CCCCCEEECCCCcc-------cchhhHHHHHHHHHHHHHhC-CCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcC
Confidence 33334445544321 01235677788898888643 467999999996 9999999999999999999999999
Q ss_pred CEEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHH
Q 013204 239 ILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSC 318 (447)
Q Consensus 239 ~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 318 (447)
++||+||||+||||+|..|++++++++||++++||+++||++|+|++++++++++.+.... ...+.+++||++||++|
T Consensus 240 ~lLI~DEv~tG~GrtG~~fa~~~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~--~~~~~~~~T~~g~p~~~ 317 (428)
T PRK07986 240 ILLIADEIATGFGRTGKLFACEHAGIAPDILCLGKALTGGTMTLSATLTTREVAETISNGE--AGCFMHGPTFMGNPLAC 317 (428)
T ss_pred CEEEEeccccCCccCCCeeeecccCCCCCEEEechhhhCCcccCcchhchHHHHHHhhcCC--CCccccCCCCCcCHHHH
Confidence 9999999999999999999999999999999999999999789999999999999986321 12356888999999999
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc
Q 013204 319 AVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH 398 (447)
Q Consensus 319 ~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 398 (447)
++++++|++++++++.+++++++++|++.|+++.+++.+.+++|.|++.++++.++. ....+.+.|+++
T Consensus 318 aaa~a~L~~i~~~~~~~~~~~~g~~l~~~l~~l~~~~~i~~vRg~Gl~~~ve~~~~~-----------~~~~~~~~l~~~ 386 (428)
T PRK07986 318 AVANASLSLLESGDWQQQVAAIEAQLREELAPLRDAPMVADVRVLGAIGVVETTRPV-----------NMAALQRFFVEQ 386 (428)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCEEeEeccceEEEEEeCCcc-----------cHHHHHHHHHHC
Confidence 999999999998899999999999999999998557888999999999999986532 134588899999
Q ss_pred CceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 399 GMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 399 Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
|+++.+.|+.+||.||+++|+++|++++++|++++++
T Consensus 387 Gl~~~~~g~~i~~~Ppl~it~~ei~~~~~~l~~~l~~ 423 (428)
T PRK07986 387 GVWIRPFGKLIYLMPPYIILPEQLQRLTAAVNRAVQD 423 (428)
T ss_pred CcEEEecCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 9999988889999999999999999999999999854
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-68 Score=521.58 Aligned_cols=388 Identities=30% Similarity=0.514 Sum_probs=335.6
Q ss_pred CCCCeEEEEecC-cEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC
Q 013204 13 DVHPLVIEKSEG-SYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT 91 (447)
Q Consensus 13 ~~~~~~~~~~~g-~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (447)
..+|+++.+++| +|+||.|||+||||.+++|+.++||+||+|.+|+.++++++...+. ...++...++++++++.++
T Consensus 61 ~~~~~~~~~~~G~~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l~~~~~--~~~~~~~~~lae~L~~~~p 138 (459)
T PRK11522 61 GDYGAVEWQAGGLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQ--ELLDPLRAMLAKTLAALTP 138 (459)
T ss_pred CCCCeeEEeccCeEEEEECCCCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhhCccccc--ccCCHHHHHHHHHHHHhCC
Confidence 467899999999 9999999999999999999999999999999999999988654432 3468889999999999863
Q ss_pred cCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC
Q 013204 92 ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH 171 (447)
Q Consensus 92 ~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
.+.++++|++||+|||+.|||++|.++.. +++.+||.++++|||++.++++.++.+.++..+....+.+..+++++
T Consensus 139 -~~~~~v~f~~SGsEAve~AlklAr~~t~~---~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d 214 (459)
T PRK11522 139 -GKLKYSFFCNSGTESVEAALKLAKAYQSP---RGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGN 214 (459)
T ss_pred -CCCCEEEEeCCchHHHHHHHHHHHHHhcc---CCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCC
Confidence 45679999999999999999999988532 34678999999999999999999887766655544444444444432
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHhh--CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcC
Q 013204 172 YWRYAHPGETEEEYSTRLANNLEDLILKE--GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA 249 (447)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g 249 (447)
.+++++.+... .++++++||+||+++++|.++|+++||++++++|++||+++|+||||+|
T Consensus 215 ------------------~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG 276 (459)
T PRK11522 215 ------------------IEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTG 276 (459)
T ss_pred ------------------HHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceec
Confidence 25566666432 3467999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh
Q 013204 250 FGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK 329 (447)
Q Consensus 250 ~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~ 329 (447)
|||+|..|+++++|+.||++|+||+|+||++|+|++++++++++.+.. +.+.+++||++||++|++++++|++++
T Consensus 277 ~GRtG~~~a~e~~gv~PDivt~gK~lggG~~Pigav~~~~~i~~~~~~-----~~~~~~~T~~gnp~~~Aaala~L~~i~ 351 (459)
T PRK11522 277 MGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLL 351 (459)
T ss_pred CCccchhhhhhccCCCCCEEEechhhhCCCccceeEEEcHHHHHHhcc-----CCcccCCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999997899999999999887742 245688999999999999999999999
Q ss_pred hhcHHHHHHHHHHHHHHhHhhc-cCCC-ceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee--
Q 013204 330 ERNIVEQVNKIAPKFQDGVKAF-SDSP-IIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-- 405 (447)
Q Consensus 330 ~~~~~~~~~~~~~~l~~~L~~l-~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-- 405 (447)
++++.+++++++++|++.|+++ .+++ .+.+++|.|+++++++.++. ....+.+.|+++||++.+.
T Consensus 352 ~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~VrG~Gl~~giel~~~~-----------~~~~i~~~l~~~Gvl~~~~~~ 420 (459)
T PRK11522 352 EQNLPAQAEQKGDYLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE-----------IGYNFASEMFRQRVLVAGTLN 420 (459)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEeceeEEEEEecCch-----------HHHHHHHHHHHCCeEEEecCC
Confidence 8899999999999999999998 5677 78999999999999997542 2456888999999999865
Q ss_pred -CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 013204 406 -GDNIMMSPPFIMSPEEVDELISKYGKALKATEERV 440 (447)
Q Consensus 406 -g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~ 440 (447)
++++||.||+.+|++||++++++|+++++++++.+
T Consensus 421 ~~~~lr~~Ppl~~t~~~id~~l~~l~~~l~~~~~~~ 456 (459)
T PRK11522 421 NAKTIRIEPPLTLTIEQCEQVLKAARKALAAMRVSV 456 (459)
T ss_pred CCCEEEEECCccCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 36899999999999999999999999999887654
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-67 Score=519.85 Aligned_cols=405 Identities=26% Similarity=0.462 Sum_probs=335.8
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
.+|+++++++|+|+||.|||+||||.+++|++++||+||+|.+|+.+++++....+.. ...++...++++++.+..+.
T Consensus 44 ~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~-~~~~~~~~~la~~L~~~~p~- 121 (464)
T PRK06938 44 RIPLALKRARGIYVEDVEGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELPLHTL-DLTTPVKDQFVQDLFASLPE- 121 (464)
T ss_pred CCCceEEeccccEEEeCCCCEEEEccCCccccccCCCCHHHHHHHHHHHHhhhccccc-ccCCHHHHHHHHHHHHhCcc-
Confidence 5789999999999999999999999999999999999999999999999753322221 34688899999999988642
Q ss_pred CC---CeEEEe-CChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCC
Q 013204 94 KM---AKVFFT-NSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDC 169 (447)
Q Consensus 94 ~~---~~v~~~-~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (447)
.. ++++|+ +||+||++.|||++|.+ +++++||.++++|||++.++++.++...++..+....+.+..+++
T Consensus 122 ~~~~~~~v~f~~~SGSEAve~AlklAr~~------tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~ 195 (464)
T PRK06938 122 AFAREAKIQFCGPTGTDAVEAALKLVKTA------TGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPY 195 (464)
T ss_pred cccccceEEEeCCCcHHHHHHHHHHHHHh------hCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCC
Confidence 22 367776 79999999999999977 567899999999999999999988876555555443344566777
Q ss_pred CCcccCCCCCCChhHHHHHHHHHHHHHHHhh--CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhh
Q 013204 170 PHYWRYAHPGETEEEYSTRLANNLEDLILKE--GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVI 247 (447)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~ 247 (447)
|+.++.+... ..+.....+++.+++.+... +++++++||+||+++++|.++|+++||++|+++|++||++||+|||+
T Consensus 196 p~~~~~~~~~-~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~ 274 (464)
T PRK06938 196 PYDYRCPFGL-GGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQ 274 (464)
T ss_pred CccccccccC-chhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc
Confidence 6554433321 12333445578888888643 23579999999999999999999999999999999999999999999
Q ss_pred cCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHH
Q 013204 248 CAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKI 327 (447)
Q Consensus 248 ~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~ 327 (447)
|||||+|..|+++++|+.||++|+||+++|| +|+|++++++++ +.+. ...+++||++||++|++++++|++
T Consensus 275 tGfGRtG~~~a~e~~gv~PDiv~~gKglggG-~PlsAv~~~~~~-~~~~-------~~~~~~T~~gnpla~Aaa~a~L~~ 345 (464)
T PRK06938 275 SGFGRTGKMFAFEHAGIIPDVVVLSKAIGGS-LPLAVVVYREWL-DTWQ-------PGAHAGTFRGNQMAMAAGSATLRY 345 (464)
T ss_pred cCCCcCcHHHHHHhcCCCCCEEEeeccccCC-CceEEEeehhHh-hccC-------CCCCCCCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 799999999885 5442 235788999999999999999999
Q ss_pred HhhhcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCC---CCCCcchHHHHHHHHHHcCceEE
Q 013204 328 YKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEP---FPPEWGIGAYFGAQCEKHGMLVR 403 (447)
Q Consensus 328 ~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~Gi~~~ 403 (447)
++++++.+++++++++|++.|+++ .+++.+.+++|.|+++++++..+...... .+........+.+.|+++|+++.
T Consensus 346 l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~ 425 (464)
T PRK06938 346 IKEHRLAEHAAAMGERLREHLRQLQRDYPQLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRRGLILE 425 (464)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHHCCeEEe
Confidence 999999999999999999999998 67899999999999999999754322111 01111245667888999999998
Q ss_pred ee---CCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 404 VS---GDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 404 ~~---g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+. ++.|||.||+++|++||++++++|++++.++
T Consensus 426 ~~g~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~ 461 (464)
T PRK06938 426 LGGRHGSVVRFLPPLIITAEQIDEVAEIFAEAVAAA 461 (464)
T ss_pred ecCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence 64 3789999999999999999999999999775
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-67 Score=514.09 Aligned_cols=407 Identities=28% Similarity=0.501 Sum_probs=339.8
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHH
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (447)
+|+|+.. ...+|+++++++|+|+||.|||+||||.+++++.+|||+||+|.+|+.++++++.+.. .....+++..
T Consensus 12 ~~~~~~~----~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~-~~~~~~~~~~ 86 (422)
T PRK05630 12 IWHPYAA----PGVRNRLVTSTDGVFLTLEDGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSHVM-FGGLTHEPAI 86 (422)
T ss_pred cccCccc----CCCCCeeEEeceeeEEEECCCCEEEEcchhHHHhcCCCCCHHHHHHHHHHHHhCCCcc-cCCcCCHHHH
Confidence 4666643 2347899999999999999999999999999999999999999999999998864322 1134688899
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCC-ccccCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGL-PALHQKFDL 159 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~-~~~~~~~~~ 159 (447)
++++++++..+ .+.++++|++||+||++.|||++++++..+|.+++.+||.+.++|||.+.++++.++. ..++..+..
T Consensus 87 ~lae~L~~~~p-~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~ 165 (422)
T PRK05630 87 KLTRKLLNLTD-NGLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKG 165 (422)
T ss_pred HHHHHHHhhCC-CCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccc
Confidence 99999999863 4568999999999999999999999987777777899999999999999999998774 334444443
Q ss_pred CCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccc-cCCCCCccCChhHHHHHHHHHHhcC
Q 013204 160 PAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPV-IGAGGVIPPPATYFEKVQAVVKKYD 238 (447)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv-~~~~G~~~~~~~~l~~l~~l~~~~g 238 (447)
......+++.|... ....++ ...+++.+++++. +++++||+||+ ++++|.++|+++|+++|+++|++||
T Consensus 166 ~~~~~~~~p~~~~~-----~~~~~~-~~~~~~~~~~~~~----~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g 235 (422)
T PRK05630 166 TLPEQIFAPAPPVR-----GSSPQE-ISEYLRSLELLID----ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHD 235 (422)
T ss_pred cCCCCeEcCCCccc-----CCChHH-HHHHHHHHHHHHh----hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcC
Confidence 33334455554321 111111 2234566666664 57999999996 9999999999999999999999999
Q ss_pred CEEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHH
Q 013204 239 ILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSC 318 (447)
Q Consensus 239 ~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 318 (447)
+++|+|||++||||+|..|+++++++.||++|+||+++||++|+|++++++++++.+.... ..+.+.|++||.+||++|
T Consensus 236 ~llI~DEv~tG~GrtG~~~a~~~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~-~~~~~~h~~T~~g~Pla~ 314 (422)
T PRK05630 236 ILLIADEIATGFGRTGELFATLAAGVTPDIMCVGKALTGGFMSFAATLCTDKVAQLISTPN-GGGALMHGPTFMANPLAC 314 (422)
T ss_pred CEEEEecceeCCCcCchhhHHHhcCCCCCeeeeechhhcCccccceeeccHHHHHHHhccC-CCCccccCCCCcCCHHHH
Confidence 9999999999999999999999999999999999999999779999999999999885321 113456889999999999
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc
Q 013204 319 AVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH 398 (447)
Q Consensus 319 ~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 398 (447)
++++++|++++++++.+++++++++|++.|+.+..++.+.+++|.|+++++++.++. ....+.+.++++
T Consensus 315 aaa~aaL~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vRg~Gl~~~ie~~~~~-----------~~~~~~~~~~~~ 383 (422)
T PRK05630 315 AVAHASLEIIETGMWRKQVKRIEAELIAGLSPLAHLPGVADVRVLGAIGVVEMEQPV-----------DMEEATQAAVDH 383 (422)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccccEEEEEECCcc-----------cHHHHHHHHHHC
Confidence 999999999998889999999999999999888557888999999999999996432 134577889999
Q ss_pred CceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 399 GMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 399 Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
|+++.+.|+.+||.||+++|++||++++++|++++++
T Consensus 384 Gl~~~~~g~~l~~~PpL~it~~~i~~~~~~l~~al~~ 420 (422)
T PRK05630 384 GVWLRPFGRLVYVMPPYITTSEQIAQICAALAAAVKA 420 (422)
T ss_pred CeEEEecCCEEEEECCccCCHHHHHHHHHHHHHHHhc
Confidence 9999988889999999999999999999999999864
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-67 Score=514.82 Aligned_cols=378 Identities=30% Similarity=0.511 Sum_probs=325.3
Q ss_pred CeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCC
Q 013204 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKM 95 (447)
Q Consensus 16 ~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 95 (447)
++++.++.|+|+||.|||+||||.+++++.++||+||+|.+|+.++++++...+. ...++...+++++|++.++ .+.
T Consensus 58 ~~~~~~~~g~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~l~~~~~--~~~~~~~~~lAe~L~~~~p-~~~ 134 (442)
T TIGR03372 58 AVEWQAGGLNTLIDTQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPLHSQ--ELLDPLRALLAKTLAALTP-GKL 134 (442)
T ss_pred eeEEEeCCeeEEEECCCCEEEECCccHHhhhcCCCCHHHHHHHHHHHHhCCCccc--ccCCHHHHHHHHHHHHhCC-CCc
Confidence 3445677779999999999999999999999999999999999999988654432 2468889999999999874 345
Q ss_pred CeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccC
Q 013204 96 AKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRY 175 (447)
Q Consensus 96 ~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (447)
++++|++||+|||+.|||+++.++.. +++.+||.++++|||++.++++.++.+.++..+....+.+.++|+++.
T Consensus 135 ~~v~f~~SGsEA~e~AlklAr~~t~~---~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~d~--- 208 (442)
T TIGR03372 135 KYSFFCNSGTESVEAALKLAKAYQSP---RGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFGDI--- 208 (442)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHHhh---cCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCCCH---
Confidence 78999999999999999999988543 346789999999999999999998876666655544455566666542
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHh--hCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcc
Q 013204 176 AHPGETEEEYSTRLANNLEDLILK--EGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRL 253 (447)
Q Consensus 176 ~~~~~~~~~~~~~~~~~le~~l~~--~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~ 253 (447)
+++++.+.. .+++++++||+||+++++|.++|+++||++++++|++||+++|+||||+||||+
T Consensus 209 ---------------~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRt 273 (442)
T TIGR03372 209 ---------------EAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRT 273 (442)
T ss_pred ---------------HHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCcc
Confidence 444444432 234689999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcH
Q 013204 254 GTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNI 333 (447)
Q Consensus 254 g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~ 333 (447)
|..|+++++++.||++++||+|+||++|+|++++++++++.+.. +.+.+++||++||++|++++++|++++++++
T Consensus 274 G~~~a~e~~gv~PDivt~gK~lg~G~~Pigavv~~~~i~~~~~~-----~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l 348 (442)
T TIGR03372 274 GKMFACEHEGVQPDILCLAKALGGGVMPIGATIATEAVFSVLFD-----NPFLHTTTFGGNPLACAAALATINELLEKNL 348 (442)
T ss_pred ccchhhhhcCCCCCeeeehhhhcCCcccceEEEecHHHHHhhhc-----cCccccCCCCCCHHHHHHHHHHHHHHHhccH
Confidence 99999999999999999999999997799999999999988742 2456789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhhc-cCCC-ceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee---CCE
Q 013204 334 VEQVNKIAPKFQDGVKAF-SDSP-IIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS---GDN 408 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l-~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---g~~ 408 (447)
.++++++++++++.|+++ .+++ .+.+++|.|+++++++.++. ....+.+.|+++|+++.+. ++.
T Consensus 349 ~~~~~~~G~~l~~~L~~l~~~~~~~i~~vRG~Gl~~giel~~~~-----------~~~~i~~~l~~~Gvl~~~~~~~~~~ 417 (442)
T TIGR03372 349 PAQAAIKGDFLLDGFQQLAAEYPDLIIEARGKGLLMAIEFRDNE-----------IGYAFAKELFQQNILVAGTLNNAKS 417 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceEEEecceEEEEEEeCChH-----------HHHHHHHHHHHCCcEEeecCCCCCE
Confidence 999999999999999998 5677 78899999999999997542 2456889999999999764 368
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 409 IMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 409 iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
+||.||+++|+++||+++++|++++
T Consensus 418 lr~~Ppl~~t~~~id~~~~~l~~~~ 442 (442)
T TIGR03372 418 IRIEPPLTITIEQCALVIKAAKDAL 442 (442)
T ss_pred EEEECCcccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998864
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-66 Score=514.02 Aligned_cols=403 Identities=26% Similarity=0.456 Sum_probs=340.2
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
..|+++++++|+++||.|||+||||+++ ++.+|||+||+|.+|+.++++++.+.. ....++...++++++++.++ .
T Consensus 53 ~~~~~i~~a~G~~l~D~dG~~ylD~~g~-~~~~lGh~~p~v~~Ai~~ql~~~~~~~--~~~~~~~~~~lae~L~~~~p-~ 128 (459)
T PRK06082 53 PCLDVLASAEGIYIEDVDGKKYMDFHGN-NVHQLGYGHPHVIEKVKEQMAKLPFSP--RRFTNETAIECAEKLTEIAG-G 128 (459)
T ss_pred CCCceEEeeeeeEEEECCCCEEEEcccH-hhcccCCCCHHHHHHHHHHHHhCCCcc--CccCCHHHHHHHHHHHHhCC-C
Confidence 4589999999999999999999999854 889999999999999999998865432 23468899999999999974 3
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcc
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYW 173 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
..++++|++||+||++.|+|+++.+ +++.+||.|.++|||++.+++++++.+.++..+....+.+..++.|..+
T Consensus 129 ~~~~v~f~~sGseAve~AlklAr~~------tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (459)
T PRK06082 129 ELNRVLFAPGGTSAIGMALKLARHI------TGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSY 202 (459)
T ss_pred CCCEEEECCCcHHHHHHHHHHHHHh------cCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCccc
Confidence 4579999999999999999999988 5678999999999999999999888776666666555566667766554
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcc
Q 013204 174 RYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRL 253 (447)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~ 253 (447)
+.+. .+.+.....+++++++.+.. .+++++||+||++++| .++|+++||++|+++|++||++||+|||++||||+
T Consensus 203 ~~~~--~~~~~~~~~~~~~l~~~i~~--~~~vAavIvEPv~g~g-~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRt 277 (459)
T PRK06082 203 RGAF--PDADGSDVHYADYLEYVIEK--EGGIGAFIAEAVRNTD-VQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRT 277 (459)
T ss_pred cccc--CChhHHHHHHHHHHHHHHhc--CCCEEEEEECCccCCC-CcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcc
Confidence 4332 22244555667888888864 2479999999999985 67889999999999999999999999999999999
Q ss_pred ccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcH
Q 013204 254 GTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNI 333 (447)
Q Consensus 254 g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~ 333 (447)
|..|+++++|+.||++++||+++||++|+|++++++++++.+. ..+.+ +|+++||++|++++++|++++++++
T Consensus 278 G~~fa~e~~gv~PDiv~~gKgl~gG~~P~~av~~~~~i~~~~~------~~~~~-~T~~gnpl~~aaa~a~L~~l~~~~l 350 (459)
T PRK06082 278 GEWFTHQAYGIEPDILCIGKGLGGGLVPIAAMITKDKYNTAAQ------ISLGH-YTHEKSPLGCAAALATIEVIEQEGL 350 (459)
T ss_pred chhhHhHhhCCCCCEEEecccccCCCCcceEEEEcHHHHhhcc------CCCCC-CCCCcCHHHHHHHHHHHHHHHhcCH
Confidence 9999999999999999999999999779999999999875542 12334 7999999999999999999988899
Q ss_pred HHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-CCEEEE
Q 013204 334 VEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-GDNIMM 411 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-g~~iR~ 411 (447)
.+++++++++|++.|+++ .+++.+.+++|.|+++++++..+.....+ .......+...|+++|+++.+. ++.+|+
T Consensus 351 ~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ve~~~~~~~~~~---~~~~~~~~~~~~~~~Gvl~~~~~~~~i~~ 427 (459)
T PRK06082 351 LEKVKADSQFMRERLLEMKAKYPLIGDVRGIGLLWGVELVTDRHTKER---AYDEAEAVLYRCLNNGLSFKVSQGNVIQL 427 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeeeeeccceeEEEEccCccccCc---cHHHHHHHHHHHHhCCCEEEecCCCEEEE
Confidence 999999999999999998 66899999999999999999754322111 1123456778899999999876 578999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 013204 412 SPPFIMSPEEVDELISKYGKALKATEERVK 441 (447)
Q Consensus 412 ~~~~~~t~e~i~~~~~~l~~~l~~~~~~~~ 441 (447)
+||+++|+++|++++++|++++.++.++++
T Consensus 428 ~Ppl~it~~eid~~~~~l~~~l~~~~~~~~ 457 (459)
T PRK06082 428 SPPLIITREELTQALAILEEAIAKICQDFN 457 (459)
T ss_pred eCCCccCHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999877764
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-66 Score=513.24 Aligned_cols=407 Identities=28% Similarity=0.480 Sum_probs=332.9
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
.+|+++++++|+|+||.|||+||||.+++++.+|||+||+|.+|+.+++++....++ ...+++...++++++++.++..
T Consensus 39 ~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~~~~~~~-~~~~~~~~~~lAe~L~~~~p~~ 117 (459)
T PRK06931 39 KLPLAIAKAQGVWVTDVEGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLPLHT-LDLTTPLKDAFSEYLLSLLPGQ 117 (459)
T ss_pred CCCceEEeccccEEEeCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhhccccc-cccCCHHHHHHHHHHHHhCCCc
Confidence 568999999999999999999999999999999999999999999999976332222 1346788899999999987432
Q ss_pred CC--CeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC
Q 013204 94 KM--AKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH 171 (447)
Q Consensus 94 ~~--~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
.. ..++|++||+||++.|||++|.+ +++.+||.|+++|||++.++++.++.+.++..+....+.+.++++|+
T Consensus 118 ~~~~~~~f~~~SGsEAve~AlklAr~~------tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~ 191 (459)
T PRK06931 118 GKEYCLQFTGPSGADAVEAAIKLAKTY------TGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPH 191 (459)
T ss_pred cccceEEEeCCCcHHHHHHHHHHHHHh------cCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCc
Confidence 11 24466699999999999999988 56789999999999999999988887666665655555667778777
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHh--hCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcC
Q 013204 172 YWRYAHPGETEEEYSTRLANNLEDLILK--EGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA 249 (447)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~le~~l~~--~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g 249 (447)
.++.+.... .+.....+.+.+++.+.. ..++++++||+||+++++|+++|+++||++|+++|++||+++|+|||+||
T Consensus 192 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tG 270 (459)
T PRK06931 192 EYRCPLGIG-GEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAG 270 (459)
T ss_pred cccccccCC-chhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhc
Confidence 655443211 111222222334444432 23467999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh
Q 013204 250 FGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK 329 (447)
Q Consensus 250 ~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~ 329 (447)
|||+|..|++++++++||++++||+++|| +|+|++++++++ +.+. ...+++||++||++|++++++|++++
T Consensus 271 fGRtG~~~a~~~~gv~PDivt~gK~l~gG-~Pi~av~~~~~~-~~~~-------~~~~~~T~~gnpla~aaala~L~~l~ 341 (459)
T PRK06931 271 FARTGKMFAFEHAGIEPDIIVMSKAVGGG-LPLAVLGIKKEF-DAWQ-------PGGHTGTFRGNQLAMATGLTTLKILK 341 (459)
T ss_pred CCcCchHHHhhhcCCCCCEEEecccccCC-cceeeeeeHHHH-hhcc-------CCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 799999988774 5553 23578899999999999999999999
Q ss_pred hhcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCC---CCCCCcchHHHHHHHHHHcCceEEee
Q 013204 330 ERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNE---PFPPEWGIGAYFGAQCEKHGMLVRVS 405 (447)
Q Consensus 330 ~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~Gi~~~~~ 405 (447)
++++.+++++++++|++.|+++ .+++.+.+++|.|+|+++++..+..... ..+........+...|+++|+++.+.
T Consensus 342 ~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~ 421 (459)
T PRK06931 342 EENLAQNAAERGEWLKAQLAELQKRYPCIGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFENGLLLERG 421 (459)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHhCCCeEeEecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHHHCCcEEeec
Confidence 9999999999999999999999 6789999999999999999975432211 11111234566888899999999765
Q ss_pred ---CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 406 ---GDNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 406 ---g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
++.+|+.||+++|++||++++++|+++++++-
T Consensus 422 ~~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~~ 456 (459)
T PRK06931 422 GRNGNVVRLLPPLLITQAECEEFIDRFEQALLAAV 456 (459)
T ss_pred CCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 36799999999999999999999999998754
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-66 Score=511.50 Aligned_cols=403 Identities=26% Similarity=0.448 Sum_probs=337.7
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
.+|+++++++|++|||.|||+||||.+++++.+|||+||+|.+|+.++++++.+.+.. ...++...++++++++..+ .
T Consensus 34 ~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~~~~~~~~-~~~~~~~~~lae~L~~~~p-~ 111 (457)
T PRK05639 34 LFPLVPKRGFGALIEDVDGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQHSMIG-YTHSERAIRVAEKLAEISP-I 111 (457)
T ss_pred CCCceEEeeecCEEEeCCCCEEEECCcCHHhhccCCCCHHHHHHHHHHHHhccccccC-ccCCHHHHHHHHHHHhhCC-C
Confidence 4689999999999999999999999999999999999999999999999886433221 2346788999999999863 3
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCC-ccccCCCCCCCCcceecCCCCc
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGL-PALHQKFDLPAPFVLHTDCPHY 172 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
+.++++|++||+|||+.|||++|.+ +++.+||.|.++|||++.+++++++. ..++..+....+.+..+++++.
T Consensus 112 ~~~~v~f~~SGsEA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~ 185 (457)
T PRK05639 112 ENPKVLFGLSGSDAVDMAIKVSKFS------TRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNP 185 (457)
T ss_pred CcCEEEEeCchHHHHHHHHHHHHHh------cCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCcc
Confidence 4579999999999999999999987 56789999999999999999988764 3344445444455667777765
Q ss_pred ccCCCCC---CChhHHHHHHHHHHHHHHHhh--CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhh
Q 013204 173 WRYAHPG---ETEEEYSTRLANNLEDLILKE--GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVI 247 (447)
Q Consensus 173 ~~~~~~~---~~~~~~~~~~~~~le~~l~~~--~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~ 247 (447)
++.+... .+.+.+...+++.+++.+... .++++++||+||+++++|.++|+++||++|+++|++||+++|+|||+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~ 265 (457)
T PRK05639 186 YRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQ 265 (457)
T ss_pred ccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechh
Confidence 4432211 123445555667788776432 35789999999999999999999999999999999999999999999
Q ss_pred cCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHH
Q 013204 248 CAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKI 327 (447)
Q Consensus 248 ~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~ 327 (447)
+||||+|..|+++++++.||++++||+++|| +|+|++++++++++... ..+.+|+++||++|++++++|++
T Consensus 266 tG~GrtG~~~a~~~~gv~PDiv~~gK~l~gG-~pi~av~~~~~i~~~~~--------~~~~~T~~g~p~~~aaa~a~l~~ 336 (457)
T PRK05639 266 TGIGRTGKWFASEWFEVKPDLIIFGKGVASG-MGLSGVIGRKELMDLTS--------GSALLTPAANPVISAAAEATLEI 336 (457)
T ss_pred hccCcCchHHHHHhcCCCCCEEEechhhcCC-CcceeEEehHHHHhhcC--------CCcccCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 79999999999988321 13457999999999999999999
Q ss_pred HhhhcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC
Q 013204 328 YKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG 406 (447)
Q Consensus 328 ~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g 406 (447)
++++++.+++++++++|++.|+++ .+++++.+++|.|+++++++..+.... .......+.+.|+++|+++.+.+
T Consensus 337 l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~VrG~Gl~~gve~~~~~~~~-----~~~~~~~~~~~~~~~Gv~~~~~g 411 (457)
T PRK05639 337 IEEENLLKNALKVGEFIKKRLLEMKESFEVIGDVRGKGLMIGVEIVKENGKP-----DPELTGKICWRAFELGLILPSYG 411 (457)
T ss_pred HHHccHHHHHHHHHHHHHHHHHHHHHhCCCEEeeccceeEEEEEEecCCCCC-----CHHHHHHHHHHHHhCCeEEeecC
Confidence 999999999999999999999998 678999999999999999986532210 11235668889999999998764
Q ss_pred ---CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 407 ---DNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 407 ---~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
+.+||.||+++|++|||+++++|+++++++.+
T Consensus 412 ~~~~~lr~~Ppl~it~~~id~~~~~l~~~l~~~~~ 446 (457)
T PRK05639 412 MFGNVIRITPPLVITKEIAEKGLEIMERAIKDALA 446 (457)
T ss_pred CCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999988753
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-66 Score=511.22 Aligned_cols=419 Identities=27% Similarity=0.451 Sum_probs=337.1
Q ss_pred CCCCcCccCC----CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChH
Q 013204 3 APFTAGWQST----DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKP 78 (447)
Q Consensus 3 ~~~~~~~~~~----~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~ 78 (447)
|||+...... ..+|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.++++++...++. ...++.
T Consensus 5 ~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~-~~~~~~ 83 (442)
T TIGR00709 5 SRQNEMESNVRSYPRKLPTAFAKAQGCWVTDVEGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLPLHTL-DLTTPL 83 (442)
T ss_pred cHHHHHHhhhhccccCCCceEEeccccEEEeCCCCEEEEccccHhhhcCCCCCHHHHHHHHHHHHhccCcccc-ccCcHH
Confidence 4555443331 23589999999999999999999999999999999999999999999999875433321 346788
Q ss_pred HHHHHHHHHHhcCcC--CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCC
Q 013204 79 SLDLAKELLEMFTAS--KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQK 156 (447)
Q Consensus 79 ~~~l~~~l~~~~~~~--~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 156 (447)
..++++++++.+++. ....++|++||+||++.|||+++.+ +++++||.+.++|||++.++++.++.+.++..
T Consensus 84 ~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e~AlklAr~~------tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~ 157 (442)
T TIGR00709 84 KDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTY------TGRTNVISFSGGFHGMTIGALAVTGNLFAKNA 157 (442)
T ss_pred HHHHHHHHHHhCCCcCCCccEEEeCCCHHHHHHHHHHHHHHh------cCCCeEEEEcCCcCCchHHHHhhcCChhhhcc
Confidence 999999999997432 1234555699999999999999988 56788999999999999999999886655555
Q ss_pred CCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHh--hCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 157 FDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILK--EGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~--~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
+....+.+..+++|+.++.+.. ...+.......+.+++.+.. ..++++++||+||+++++|.++|+++||++|+++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc 236 (442)
T TIGR00709 158 VGMLMPGVQFMPYPHEYRCPFG-IGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVT 236 (442)
T ss_pred CCCCCCCcEEeCCCcccccccc-CCchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHH
Confidence 5544445566666655443321 11122222223334554432 23467999999999999999999999999999999
Q ss_pred HhcCCEEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCc
Q 013204 235 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGH 314 (447)
Q Consensus 235 ~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 314 (447)
++||+++|+|||++||||+|+.|+++++++.||++++||++++| +|+|+++++++ ++.+. ...+++||++|
T Consensus 237 ~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~~G-~Pigav~~~~~-~~~~~-------~~~~~~T~~gn 307 (442)
T TIGR00709 237 RKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVVMSKAVGGG-LPLAVLLIAPE-FDAWQ-------PAGHTGTFRGN 307 (442)
T ss_pred HHcCCEEEEeccccCCCCCCchhHHHHcCCCCcEEEEcccccCC-cccEEEEEchH-HhccC-------CCcCCCCCCcC
Confidence 99999999999999999999999999999999999999999998 89999999988 45443 23467899999
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCC---CCCCCcchHHH
Q 013204 315 PVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNE---PFPPEWGIGAY 390 (447)
Q Consensus 315 ~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~---~~~~~~~~~~~ 390 (447)
|++|++++++|+.++++++.+++++++++|++.|+++ .+++.+.+++|.|+++++++.++..+.. .++........
T Consensus 308 pla~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~ 387 (442)
T TIGR00709 308 QLAMVTGTEALNYWKDDNLAQNAQERGERITSFLDDMIKEHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAA 387 (442)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEccCcccccccccCCcchHHHHH
Confidence 9999999999999988999999999999999999998 6789999999999999999975432211 11112234566
Q ss_pred HHHHHHHcCceEEee---CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 391 FGAQCEKHGMLVRVS---GDNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 391 ~~~~l~~~Gi~~~~~---g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
+...|+++|+++.+. ++.+|+.||+++|+++|++++++|++++.++.+
T Consensus 388 ~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~~~ 438 (442)
T TIGR00709 388 IQGACFENGLLLETGGREGEVFRLLCPITIDQEECEEGISRFKQAVEEALA 438 (442)
T ss_pred HHHHHHHCCeEEeecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999765 478999999999999999999999999987644
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-66 Score=508.12 Aligned_cols=411 Identities=27% Similarity=0.516 Sum_probs=345.6
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHH
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (447)
+|+||+..... ++|+++++++|+++||.|||+||||.+++++++|||+||+|.+|+.++++++.+... ...+++...
T Consensus 12 ~~~~~~~~~~~--~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~-~~~~~~~~~ 88 (423)
T PRK05964 12 VWHPYTQMKLH--PPPIPIVRAEGAYLYLADGRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDHVIF-AGFTHEPAE 88 (423)
T ss_pred eecCCCCcccc--CCCeeEEeccccEEEeCCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHhhCCCccc-cccCCHHHH
Confidence 58898766433 478999999999999999999999999999999999999999999999988644321 134778899
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP 160 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 160 (447)
++++++++.++ .+.++++|++||+||++.|||++|.++..++.+++++||.|+++|||++.++++.++.+.+...+...
T Consensus 89 ~la~~l~~~~p-~~~~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~ 167 (423)
T PRK05964 89 RLAQRLVALTP-GGLDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPL 167 (423)
T ss_pred HHHHHHHHhCC-CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCc
Confidence 99999999873 35679999999999999999999999877777788999999999999999999988765544433322
Q ss_pred CCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEcc-ccCCCCCccCChhHHHHHHHHHHhcCC
Q 013204 161 APFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEP-VIGAGGVIPPPATYFEKVQAVVKKYDI 239 (447)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~ep-v~~~~G~~~~~~~~l~~l~~l~~~~g~ 239 (447)
......+++|.. +....+++++++.+... ++++++||+|| +++++|+++|+++||++|+++|++||+
T Consensus 168 ~~~~~~~~~~~~-----------d~~~~~~~~l~~~l~~~-~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~ 235 (423)
T PRK05964 168 LFEQVTAPFPPD-----------GYEQATLDALEALLEKH-AGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGV 235 (423)
T ss_pred CCCCEEeCCCcc-----------hhHHHHHHHHHHHHHhC-CCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCC
Confidence 222344444321 12234467888888643 46899999999 699999999999999999999999999
Q ss_pred EEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHH
Q 013204 240 LFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCA 319 (447)
Q Consensus 240 ~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 319 (447)
++|+||||+||||+|..++++++++.||++++||+++||++|+|++++++++++.+.... ..+.+.+++||++||++++
T Consensus 236 llI~DEv~tg~gr~G~~~a~~~~~v~pDi~~~~K~l~gG~~p~~av~~~~~i~~~~~~~~-~~~~~~~~~T~~~np~~~a 314 (423)
T PRK05964 236 LLIFDEIATGFGRTGTLFACEQAGVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDD-RAKAFMHSPSYTANPLACA 314 (423)
T ss_pred EEEEechhhCCCcCcchhHHHhcCCCCCeeeeehhhhcCcccceEEEEcHHHHHhhhcCC-cccccccCCCCCcCHHHHH
Confidence 999999999999999988889999999999999999999789999999999999885310 1234467889999999999
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcC
Q 013204 320 VAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHG 399 (447)
Q Consensus 320 aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 399 (447)
++++++++++++++.+++.++++++++.|+++..++.+.++++.|+++++++.++... .....+.+.|+++|
T Consensus 315 aa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~l~~~~~i~~vrg~Gl~~~i~l~~~~~~--------~~~~~l~~~l~~~G 386 (423)
T PRK05964 315 AANASLDLFEDEPVLERVAALSAGLAEGLEPFRDLPGVADVRVLGAIGAVELDRPVLE--------RDGPALRAFALERG 386 (423)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhccCCCeEEeecccEEEEEEeccCcch--------hHHHHHHHHHHHCC
Confidence 9999999998888999999999999999998855777778999999999998653210 12456888999999
Q ss_pred ceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 400 MLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 400 i~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
|++.+.++.+||+||+++|++|||+++++|+++++++
T Consensus 387 v~v~~~~~~lR~~p~l~~t~edId~~v~~l~~al~~~ 423 (423)
T PRK05964 387 VLLRPLGNTIYLMPPYIITAEELDRITDAIVEVADEL 423 (423)
T ss_pred eEEEecCCEEEEeCCcccCHHHHHHHHHHHHHHHhhC
Confidence 9999888899999999999999999999999999763
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-66 Score=509.05 Aligned_cols=400 Identities=27% Similarity=0.480 Sum_probs=329.2
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
.+|+++++++|+++||.|||+||||.+++|+++|||+||+|.+|+.++++++.+. .....+++...++++++++.++..
T Consensus 37 ~~p~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~-~~~~~~~~~~~~la~~l~~~~p~~ 115 (443)
T PRK06058 37 TLPVYVARAGGGIVEDVDGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVARFTHT-CFMVTPYEGYVAVAEQLNRLTPGD 115 (443)
T ss_pred CCCceEEeeeeeEEEeCCCCEEEEcCcchhhhccCCCCHHHHHHHHHHHHhccCc-cccccCCHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999999999999999999999875432 222346788999999999987433
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCc-cccCCCCCCCCcceecCCCCc
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLP-ALHQKFDLPAPFVLHTDCPHY 172 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 172 (447)
..++++|++||+||++.|||++|.+ +++++||.++++|||++.++++.++.. .++..+....+....++++..
T Consensus 116 ~~~~v~f~~sGseA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (443)
T PRK06058 116 HEKRSALFNSGAEAVENAVKIARSY------TGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYP 189 (443)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHh------hCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcc
Confidence 3469999999999999999999988 456889999999999999999887642 344444433344444554443
Q ss_pred ccCCC-CCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCC
Q 013204 173 WRYAH-PGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG 251 (447)
Q Consensus 173 ~~~~~-~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g 251 (447)
++... +....+.....+++.+++.+ .++++++||+||+++++|.++|+++||++|+++|++||+++|+|||++|||
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfg 266 (443)
T PRK06058 190 YRDPKGLATDGEEAAARAITVIEKQV---GADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFA 266 (443)
T ss_pred cccccccccchHHHHHHHHHHHHHhh---CCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 32110 01111222223344455444 246899999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh
Q 013204 252 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER 331 (447)
Q Consensus 252 ~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~ 331 (447)
|+|..|+++++++.||++++||+++|| +|+|++++++++++.+. ...+++||++||++|++++++|+.++++
T Consensus 267 RtG~~fa~~~~gv~PDiv~~gK~l~~G-~Pi~av~~~~~i~~~~~-------~~~~~~T~~gnpl~~aaa~a~L~~~~~~ 338 (443)
T PRK06058 267 RTGAWFACEHEGIVPDLITTAKGIAGG-LPLSAVTGRAEIMDAPH-------PGGLGGTYGGNPVACAAALAAIETIEED 338 (443)
T ss_pred cChhhhHHHhcCCCCCEEEEcccccCC-CccEEEEEcHHHHhhcc-------CCCCCCCCCCCHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999988 79999999999998875 2357789999999999999999999889
Q ss_pred cHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC---C
Q 013204 332 NIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG---D 407 (447)
Q Consensus 332 ~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g---~ 407 (447)
++.++++++++++++.|+++ .+++++.+++|.|+++++++..+.. .. ........+.+.|+++|+++.+.+ +
T Consensus 339 ~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~~-~~---~~~~~~~~l~~~~~~~Gv~~~~~~~~~~ 414 (443)
T PRK06058 339 DLVARARQIEALMTDRLRALAAEDDRIGDVRGRGAMIAIELVKPGT-TE---PDAELTKALAAAAHAAGVIVLTCGTYGN 414 (443)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCcEEeeeccceEEEEEEecCCC-CC---CcHHHHHHHHHHHHHCCeEEeccCCCCC
Confidence 99999999999999999998 5678999999999999999965421 11 112245668888999999998753 6
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 408 NIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 408 ~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
.+|+.||+++|+++|++++++|++++++
T Consensus 415 ~lr~~Ppl~~t~~~i~~~~~~l~~~l~~ 442 (443)
T PRK06058 415 VIRLLPPLVIGDELLREGLDVLEAALAD 442 (443)
T ss_pred EEEEECCCccCHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999865
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-65 Score=528.82 Aligned_cols=428 Identities=25% Similarity=0.345 Sum_probs=344.3
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCc----EEEeCCCC----EEEecCCccccccCC-CCCHHHHHHHHHHHhcCCccccc
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGS----YVYDVNGK----KYLDSLAGLWCTALG-GSEPRLVAAATAQLNTLPFYHSF 71 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~----~~~d~dg~----~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~~~~ 71 (447)
+||||+++.......|.+|++++|. |++|.||+ +|||+++++|++++| |+||+|.+|+.++++++.+.+ +
T Consensus 325 iw~Pftq~~~~~~~~~~vi~~a~G~~~~~~~~d~~G~~~~~~ylD~~sg~w~~~lG~h~~p~I~~Ai~~Qa~rl~hv~-~ 403 (817)
T PLN02974 325 LWWPFTQHALVPRDSVTVIDSRCGEDFSVYKPKTNSTCSIVQQFDACASWWTQGPDPTLQPELARAVAYAAGRYGHVM-F 403 (817)
T ss_pred ccCCcccccccCCCCceEEEeeecCceeEEEECCCCCcccceEEEcchhHHHhCCCcCCCHHHHHHHHHHHhhCCccc-c
Confidence 6999999998765568999999999 99999998 999999999999999 689999999999999876553 2
Q ss_pred CcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHH-HHHHhcCCC------------CcceEEEEcCCCc
Q 013204 72 WNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVW-YYNNALGRP------------NKKKFIARQKSYH 138 (447)
Q Consensus 72 ~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~-~~~~~~~~~------------~~~~vi~~~~~yh 138 (447)
....+++..+|+++|.+..+....++|+|++||+||||.|||+++ +++..+|++ ++.+||.+.++||
T Consensus 404 ~~~~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeAvE~AlKmA~r~y~~~~G~~~~~~~~~~~~~~~r~kIIa~~gsYH 483 (817)
T PLN02974 404 PENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGFLENSGNEKRGGDLIELKVLALDGSYH 483 (817)
T ss_pred CccCCHHHHHHHHHHHhccCCCCCCEEEECCchHHHHHHHHHHHHHHHHHhcCCCcccccccccccCCCCEEEEECCCcC
Confidence 345789999999999995321236799999999999999999996 476665643 5789999999999
Q ss_pred cchhhhhcccCCccccCCCCCC--CCcceecCCCCcc-cC-----CCCC-----------------------CChhHHHH
Q 013204 139 GSTLIAASLSGLPALHQKFDLP--APFVLHTDCPHYW-RY-----AHPG-----------------------ETEEEYST 187 (447)
Q Consensus 139 g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~-----~~~~-----------------------~~~~~~~~ 187 (447)
|.+.+++++++.+.++..+..+ .+...+++.|..+ +. ..|. .+.+.+..
T Consensus 484 G~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~ 563 (817)
T PLN02974 484 GDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAK 563 (817)
T ss_pred CCCHHHHhhCCchhhhcccccccccCCCcccCCCccccccccccccCCccccccccccccccccccccccccccchhhhH
Confidence 9999999999876555443111 1112223322211 00 0000 01223445
Q ss_pred HHHHHHHHHHHh----hCCCcEEEEEEccc-cCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccC
Q 013204 188 RLANNLEDLILK----EGPETIAAFIAEPV-IGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKY 262 (447)
Q Consensus 188 ~~~~~le~~l~~----~~~~~~a~vi~epv-~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~ 262 (447)
.+++.+++.+.+ ..++++++||+||+ ++.||+++|+++|+++|+++|++||++||+|||+|||||+|+.|+++++
T Consensus 564 ~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~ 643 (817)
T PLN02974 564 AYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELL 643 (817)
T ss_pred HHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhc
Confidence 556778887764 34578999999996 8999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcH----HHHHH
Q 013204 263 SIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNI----VEQVN 338 (447)
Q Consensus 263 ~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~----~~~~~ 338 (447)
|+.|||+|++|+|+||++|+|++++++++++.+... ...+.+.|++||++||++|++|+++|++++++++ .+..+
T Consensus 644 gv~PDIi~~gKgLtgG~~Plaa~l~~~~I~~~f~~~-~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~~~l~~~~~ 722 (817)
T PLN02974 644 GCKPDIACYAKLLTGGLVPLAATLATEEVFEAFRGP-SKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTNPNLIPPGS 722 (817)
T ss_pred CCCCCEEeecccccCCCCccEEEEEcHHHHHhhccc-cccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 999999999999999988999999999999998532 1223567999999999999999999999988754 44555
Q ss_pred HHHHHHHHhH-hhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEeeCCEEEEecCCC
Q 013204 339 KIAPKFQDGV-KAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVSGDNIMMSPPFI 416 (447)
Q Consensus 339 ~~~~~l~~~L-~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~g~~iR~~~~~~ 416 (447)
++++++++.| +.+.+++.+.++++.|+++++++.++... .++ ....+..+.+.++ ++|+++++.|+.||+.||+.
T Consensus 723 ~l~~~l~~~l~~~l~~~p~V~~VRg~Gl~~~iel~~~~~~-~~~--~~~~a~~v~~~~~~~~Gl~~r~~Gnvi~l~pP~~ 799 (817)
T PLN02974 723 RLRELWDEELVRAISSLPNVERVVSLGTVLALELDAEGSG-SGY--SSLYARSVVRRLRREDGIYARPLGNVVYLMCGPT 799 (817)
T ss_pred HHHHHHHHHHHHHHhhCCCeeEEEeeeeEEEEEEecCCcc-ccc--chHHHHHHHHHHHHhCCEEEEecCCEEEEeCCCC
Confidence 5556666677 45566899999999999999999764322 222 1224566788888 99999999899999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 013204 417 MSPEEVDELISKYGKAL 433 (447)
Q Consensus 417 ~t~e~i~~~~~~l~~~l 433 (447)
++++++++++++|.+.|
T Consensus 800 i~~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 800 TSPETCTRLLRKVYRRL 816 (817)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999998876
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-65 Score=505.41 Aligned_cols=407 Identities=27% Similarity=0.483 Sum_probs=340.1
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
..+|+++++++|+++||.|||+||||.+++|+.+|||+||+|.+|+.++++++...+. ....++...+++++|++.++.
T Consensus 22 ~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~~~~~~~-~~~~~~~~~~lae~L~~~~p~ 100 (445)
T PRK08593 22 KYYPLVIDHGYGATLTDVDGKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFIHYTP-AYMYHEPLVRLAKKLCELAPG 100 (445)
T ss_pred CCCCceEEeeeeCEEEeCCCCEEEECCccHHhhcCCCCCHHHHHHHHHHHHhccCccc-cccCCHHHHHHHHHHHHhCCC
Confidence 3468999999999999999999999999999999999999999999999988654332 134688999999999999743
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCc-cccCCCCCCCCcceecCCCC
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLP-ALHQKFDLPAPFVLHTDCPH 171 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 171 (447)
...++|+|++||+|||+.|||++|.+ +++.+||.++++|||++.+++++++.. .++..+....+.+.++++|+
T Consensus 101 ~~~~~v~f~~SGseA~e~AiklAr~~------tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~ 174 (445)
T PRK08593 101 DFEKRVTFGLSGSDANDGIIKFARAY------TGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPD 174 (445)
T ss_pred CCCCEEEECCchHHHHHHHHHHHHHh------hCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCc
Confidence 22369999999999999999999987 567899999999999999999888743 23444544445566777776
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHhh-CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCC
Q 013204 172 YWRYAHPGETEEEYSTRLANNLEDLILKE-GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250 (447)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~le~~l~~~-~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~ 250 (447)
.++.+.... .+......++++++.+... .++++++||+||+++++|+++|+++||++|+++|++||++||+||||+||
T Consensus 175 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~ 253 (445)
T PRK08593 175 KYRGMYEEP-DANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGL 253 (445)
T ss_pred cccccccCC-cHHHHHHHHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCC
Confidence 654332222 2233444456777766542 34689999999999999999999999999999999999999999999999
Q ss_pred CccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh
Q 013204 251 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE 330 (447)
Q Consensus 251 g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~ 330 (447)
||+|..++++++++.||++++||+++|| +|+|++++++++++.+.. ..+.+|++++|++|++++++|+++++
T Consensus 254 GrtG~~~a~~~~gv~pDi~t~gK~l~~G-~p~gav~~~~~i~~~~~~-------~~~~~T~~~~pl~~aaa~a~l~~l~~ 325 (445)
T PRK08593 254 GRTGKWSSISHFNITPDLMSFGKSLAGG-MPMSAIVGRKEIMESLEA-------PAHLFTTGANPVSCAAALATIDMIED 325 (445)
T ss_pred CcCchHHHHHhcCCCCCEeeecccccCC-cccEEEEEcHHHHhhhcc-------CCCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 9999988899999999999999999998 799999999999998852 24567999999999999999999998
Q ss_pred hcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-CCE
Q 013204 331 RNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-GDN 408 (447)
Q Consensus 331 ~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-g~~ 408 (447)
+++.+++++++++|++.|+++ .+++.+.+++|.|+++++++..+..... + .......+.+.|+++||++.+. ++.
T Consensus 326 ~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~gi~l~~~~~~~~--~-~~~~~~~~~~~~~~~Gv~~~~~~~~~ 402 (445)
T PRK08593 326 ESLLQRSAEKGEYARKRFDQWVSKYNFVGDVRGYGLSIGIDIVSDKKLKT--R-DNEAALKICNYCFEHGVVIIAVAGNV 402 (445)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccceEEEEEEecCCCcCC--C-cHHHHHHHHHHHHHCCeEEeccCCCE
Confidence 899999999999999999998 6789999999999999999875322111 1 1123566888999999999764 478
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 409 IMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 409 iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
+||+||+.+|++||++++++|+++++++..
T Consensus 403 lr~~p~l~~t~~~id~~~~~l~~~l~~~~~ 432 (445)
T PRK08593 403 LRFQPPLVITYEQLDTALNTIEQAFTALEA 432 (445)
T ss_pred EEEECCCccCHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999988754
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-66 Score=454.80 Aligned_cols=382 Identities=31% Similarity=0.505 Sum_probs=334.0
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
.+.|+++.+++|+++||.+|++|+||.+++++.+-||+||.|.++++++++++...++. ++.+...++++.+..+|
T Consensus 39 hpLpvvf~ka~g~~vwD~eGk~ylDflsaysaVnqGhchpki~~aLqeq~~kLtlssra--fYnd~~~~f~~~vt~lf-- 114 (427)
T KOG1402|consen 39 HPLPVVFSKAKGSRVWDPEGKEYLDFLSAYSAVNQGHCHPKIIKALQEQADKLTLSSRA--FYNDVLGEFAEYVTKLF-- 114 (427)
T ss_pred CcCceEEEecCCcEEECCCccchhhhhhhhhhcccCCCCHHHHHHHHHHHhHhhhhhHH--HhhhhHHHHHHHHHHhc--
Confidence 45789999999999999999999999999999999999999999999999986554443 36778889999999997
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHh-cC-CCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCc-ceecCC
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNA-LG-RPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPF-VLHTDC 169 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~-~~-~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 169 (447)
+.++|+-.++|.||+|.|+|++|.+... ++ .+.+.+|+...++|||.+.++++.+..+.-...++++.+. +..+++
T Consensus 115 -~~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~Y 193 (427)
T KOG1402|consen 115 -GYDKVLPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPY 193 (427)
T ss_pred -CcceeeecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeecc
Confidence 6778999999999999999999854322 22 2345678888999999999999999887667778877776 556665
Q ss_pred CCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcC
Q 013204 170 PHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA 249 (447)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g 249 (447)
.+ +++|+..+.. +.++++|+||+|+++|.++|+++||+.+++||++|++++|.||||||
T Consensus 194 ~d------------------~eale~~l~~---~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTG 252 (427)
T KOG1402|consen 194 GD------------------AEALEVALKS---PNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTG 252 (427)
T ss_pred CC------------------HHHHHHHhcC---CCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhc
Confidence 43 4788888773 68999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh
Q 013204 250 FGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK 329 (447)
Q Consensus 250 ~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~ 329 (447)
+||+|+.+++++.++.||++.++|+++||.+|++++++++++|..+. +..|++||.+||++++++.|+|+++.
T Consensus 253 l~RTGk~la~d~env~PDivilgKalSGG~~Pvsavl~~~~im~~~~-------pgeHgsTyggNpLg~~vaiAalevi~ 325 (427)
T KOG1402|consen 253 LARTGKLLACDYENVRPDIVILGKALSGGVYPVSAVLADDDIMLNIK-------PGEHGSTYGGNPLGCAVAIAALEVIV 325 (427)
T ss_pred ccccCcEEEeehhhcCCCeEEEeccccCCeeeeEEEEecHHHHhccC-------CCccccccCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876 55799999999999999999999999
Q ss_pred hhcHHHHHHHHHHHHHHhHhhc-cCCC-ceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-
Q 013204 330 ERNIVEQVNKIAPKFQDGVKAF-SDSP-IIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG- 406 (447)
Q Consensus 330 ~~~~~~~~~~~~~~l~~~L~~l-~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g- 406 (447)
++++.++..+++..|+.+|+++ .+.| ++..++|.|++.++.+...+.... .+..++-.|.++|++.-|..
T Consensus 326 eekL~era~~lG~~l~~~L~~l~~~~p~~v~~VRGrGl~~ai~i~~~~~~~~-------~aw~~cl~lk~~g~LAkptH~ 398 (427)
T KOG1402|consen 326 EEKLVERAAKLGEILRDQLNKLQKKFPHVVKEVRGRGLLNAIVINPSKTSGQ-------DAWDVCLALKENGLLAKPTHG 398 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccchhheeeccceEEEEEeccccccch-------hHHHHHHcccccccccCCCCC
Confidence 9999999999999999999999 4554 678999999999998875443211 24557778889999988764
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 407 DNIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 407 ~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
+.|||.||+.++++|+++.++++++++.
T Consensus 399 ~IiRfaPPL~I~e~dl~eg~e~i~k~i~ 426 (427)
T KOG1402|consen 399 NIIRFAPPLVISEEDLREGIEAIEKTIA 426 (427)
T ss_pred CeEEecCCcccCHHHHHHHHHHHHHHhc
Confidence 6799999999999999999999998763
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-64 Score=496.73 Aligned_cols=401 Identities=33% Similarity=0.564 Sum_probs=334.8
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
.+|+++++++|+++||.|||+||||.+++|+.++||+||+|.+|+.++++++...+. ....+++..+++++|++..+..
T Consensus 35 ~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~-~~~~~~~~~~lAe~L~~~~p~~ 113 (441)
T PRK05769 35 WYPLVIERGEGVWVEDVDGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLHYSL-TDFYYEPAVELAERLVEIAPGG 113 (441)
T ss_pred CCCeeEEecceEEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccCccC-cccCCHHHHHHHHHHHHhCCCC
Confidence 468999999999999999999999999999999999999999999999987543321 1246788999999999987433
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCC-ccccCCCCCCCCcceecCCCCc
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGL-PALHQKFDLPAPFVLHTDCPHY 172 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
..++++|++||+|||+.|||+++.+ +++++||.++++|||++.++++.++. +.++..+....+.+.++++|+.
T Consensus 114 ~~~~v~f~~SGsEA~e~AlklAr~~------tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (441)
T PRK05769 114 FEKKVFFTNSGTESNEAAIKIARYH------TGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNP 187 (441)
T ss_pred CCCEEEECCchHHHHHHHHHHHHHH------hCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCcc
Confidence 3579999999999999999999988 45789999999999999999988764 3344445444555667777765
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHH-Hh-hCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCC
Q 013204 173 WRYAHPGETEEEYSTRLANNLEDLI-LK-EGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250 (447)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~le~~l-~~-~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~ 250 (447)
++.+....+.+.....+++.+++.+ .. ..++++++||+||+++++|+++|+++||++|+++|++||+++|+|||++||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~ 267 (441)
T PRK05769 188 YRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGM 267 (441)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCC
Confidence 5433221233344445567788744 32 245689999999999999999999999999999999999999999999999
Q ss_pred CccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh
Q 013204 251 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE 330 (447)
Q Consensus 251 g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~ 330 (447)
||+|..++++++++.||++++||++++| +|+|++++++++++.+ ...+++||+++|+++++++++|+++++
T Consensus 268 gr~G~~~a~~~~gv~pDivt~~K~l~~G-~p~gav~~~~~i~~~~--------~~~~~~T~~g~p~~~aaa~a~L~~l~~ 338 (441)
T PRK05769 268 GRTGKMFAIEHFGVEPDIITLAKAIAGG-LPLGAVIGRAELMFLP--------PGSHANTFGGNPVAAAAALATLEELEE 338 (441)
T ss_pred CcccceehhhccCCCCCEEEEcccccCC-cccEEEEEehhhhhcC--------CCCCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 9999988999999999999999999998 8999999999987543 224678999999999999999999988
Q ss_pred hcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CE
Q 013204 331 RNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DN 408 (447)
Q Consensus 331 ~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~ 408 (447)
++.+++++++++|++.|+++ .+++.+..++|.|+++++++.++.. .+ .......+.+.|+++|+++.+.+ +.
T Consensus 339 -~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~--~~---~~~~~~~~~~~~~~~Gil~~~~~~~~ 412 (441)
T PRK05769 339 -GLLENAQKLGEYLRKELKELKEKYEFIGDVRGLGLMIGVELVKDRK--EP---DPKLRDKVLYEAFKRGLLLLGAGKSA 412 (441)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhCCCeeeeecceEEEEEEeccCCc--cc---cHHHHHHHHHHHHhCCcEEecCCCCE
Confidence 99999999999999999998 5688889999999999999965421 10 11235567888999999998766 67
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 409 IMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 409 iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+||+||+++|++||++++++|++++.++
T Consensus 413 lr~~p~l~~t~~~id~~~~~l~~~l~~~ 440 (441)
T PRK05769 413 IRIIPPLIITEEEADIGLEILEEAIKEL 440 (441)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998753
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-64 Score=493.56 Aligned_cols=396 Identities=25% Similarity=0.430 Sum_probs=333.0
Q ss_pred CCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCC
Q 013204 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASK 94 (447)
Q Consensus 15 ~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 94 (447)
.|+++++++|+++||.|||+||||.+++++.+|||+||+|.+|+.++++++.+... ...+++...++++++++.++...
T Consensus 22 ~p~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~-~~~~~~~~~~la~~l~~~~p~~~ 100 (425)
T PRK07495 22 TQIYADRAENAEIWDKEGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTHTCH-QVVPYENYVRLAERLNALVPGDF 100 (425)
T ss_pred CCeeEEeeeecEEEeCCCCEEEEccccHHhhccCCCCHHHHHHHHHHHhhccCccc-CccCCHHHHHHHHHHHHhCCCCC
Confidence 48999999999999999999999999999999999999999999999988643321 23467889999999999874322
Q ss_pred CCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCC-ccccCCCCCCCCcceecCCCCcc
Q 013204 95 MAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGL-PALHQKFDLPAPFVLHTDCPHYW 173 (447)
Q Consensus 95 ~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
.++++|++||+|||+.|||+++.+ +++.+||.|+++|||++.+++++++. ..++..+....+.+.++++|+.+
T Consensus 101 ~~~v~f~~SGseA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (425)
T PRK07495 101 AKKTIFVTTGAEAVENAVKIARAA------TGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVEL 174 (425)
T ss_pred CCEEEECCchHHHHHHHHHHHHHh------hCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCccc
Confidence 369999999999999999999987 55788999999999999999888775 34555555444555667776543
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHh-hCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc
Q 013204 174 RYAHPGETEEEYSTRLANNLEDLILK-EGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252 (447)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~le~~l~~-~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~ 252 (447)
+. .+ ...+++++++.+.. ..++++++||+||+++++|.++++++|+++|+++|++||+++|+||||+||||
T Consensus 175 ~g----~~----~~~~~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr 246 (425)
T PRK07495 175 HG----VS----VEQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFAR 246 (425)
T ss_pred cc----cc----HHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCc
Confidence 21 11 12335667777753 34568999999999999998999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhc
Q 013204 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERN 332 (447)
Q Consensus 253 ~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~ 332 (447)
+|..|+++++++.||++++||++++| +|+|++++++++++.+.. ..+.+||+++|+++++++++++++++++
T Consensus 247 ~G~~~a~~~~gv~pDi~tlsK~l~~G-~pigav~~~~~i~~~~~~-------~~~~~T~~~~pl~~aaa~a~l~~l~~~~ 318 (425)
T PRK07495 247 TGKLFAMEHHEVAADLTTMAKGLAGG-FPLAAVTGRAEIMDAPGP-------GGLGGTYGGNPLGIAAAHAVLDVIEEED 318 (425)
T ss_pred CCCceeecccCCCCCEEeehhhhcCC-ccceEEEEcHHHHhccCC-------CCcCCCCCCCHHHHHHHHHHHHHHHhch
Confidence 99988899999999999999999998 799999999999988752 2466899999999999999999999889
Q ss_pred HHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee---CCE
Q 013204 333 IVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS---GDN 408 (447)
Q Consensus 333 ~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---g~~ 408 (447)
+.++++++++++++.|+++ ..++.+.++++.|+++++++.+... ..+ .......+.+.|+++|+++... ++.
T Consensus 319 l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~iel~~~~~-~~~---~~~~~~~~~~~~~~~Gvl~~~~g~~~~~ 394 (425)
T PRK07495 319 LCERANQLGNRLKQRLASLRETVPEIADIRGPGFMNAVEFNDADS-GLP---SAEFANRVRLKALEKGLILLTCGVHGNV 394 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeeeeecCceEEEEEEecCCC-CCc---cHHHHHHHHHHHHHCCeEEeecCCCCCE
Confidence 9999999999999999998 5678889999999999999965321 111 1123566888899999999765 378
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 409 IMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 409 iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
+||.||+++|++++|+++++|++++++++
T Consensus 395 ~r~~Ppl~it~~~id~~~~~l~~~l~~~~ 423 (425)
T PRK07495 395 IRFLAPITIQDDVFAEALDILEASILEAS 423 (425)
T ss_pred EEEeCCCccCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998764
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-64 Score=488.17 Aligned_cols=384 Identities=31% Similarity=0.530 Sum_probs=330.2
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
.++|+++++++|+|+||.|||+||||.++++++++||+||+|.+|+.++++++.+... ...+++..+++++|++..+
T Consensus 20 ~~~~~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~--~~~~~~~~~la~~L~~~~~- 96 (408)
T PRK04612 20 RPRQVVLERGQGSRVWDDQGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWHTSN--VFYSAPPLKLAEELVTASR- 96 (408)
T ss_pred CCCCceEEEeeeCEEEECCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccccc--ccCCHHHHHHHHHHHhhCC-
Confidence 3678999999999999999999999999999999999999999999999987644322 2357888999999999863
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCC-CCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGR-PNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH 171 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~-~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
..++++|++||+|||+.|||+++.++..+|+ +++.+||.|+++|||++.++++.++.+.++..+......+..+++++
T Consensus 97 -~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d 175 (408)
T PRK04612 97 -FAEKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFND 175 (408)
T ss_pred -CCCEEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCCC
Confidence 2379999999999999999999998766664 35678999999999999999998887766665543333334444432
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCC
Q 013204 172 YWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG 251 (447)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g 251 (447)
.+.+++.+. ++++++||+||++++||++.++++|+++|+++|++||+++|+||||+|||
T Consensus 176 ------------------~~~l~~~~~---~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g 234 (408)
T PRK04612 176 ------------------VEALEAAMA---GGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMG 234 (408)
T ss_pred ------------------HHHHHHhhC---CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 366777664 46899999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh
Q 013204 252 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER 331 (447)
Q Consensus 252 ~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~ 331 (447)
++|..++...+++.||++++||++++| +|+|++++++++++.+.. ..+++||+++|++++++.++|+.++++
T Consensus 235 r~G~~~a~~~~~~~pdi~t~~K~l~~G-~piga~~~~~~~~~~~~~-------~~~~~t~~~~p~~~aaa~a~L~~~~~~ 306 (408)
T PRK04612 235 RTGTLFAHWQEQVTPDIVTLAKALGGG-FPIGAMLAGPKVAETMQF-------GAHGTTFGGNPLAAAVARVALRKLASP 306 (408)
T ss_pred cCCchhhhhhcCCCCCEEEEcchhcCC-CceEEEEECHHHHhhhcC-------CCcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 999888877789999999999999988 899999999998887752 246679999999999999999999989
Q ss_pred cHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEE
Q 013204 332 NIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNI 409 (447)
Q Consensus 332 ~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~i 409 (447)
++.++++++++++++.|+++ .+++.+.+++|.|+++++++..+.. .....+.+.|+++|+++.+.+ +.+
T Consensus 307 ~l~~~~~~~g~~l~~~l~~l~~~~~~i~~vrg~Gl~~~i~~~~~~~---------~~a~~i~~~l~~~Gvlv~~~g~~~l 377 (408)
T PRK04612 307 QIAANVARQSAALRAGLEALNAEFGVFAQVRGRGLMLGAVLAPAHA---------GQAGAILDLAAEHGLLLLQAGPDVL 377 (408)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhCCCeeeeeccceEEEEEecCchh---------hHHHHHHHHHHHCCeEEeeCCCCEE
Confidence 99999999999999999998 6678999999999999999863211 124568888999999998877 789
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 410 MMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 410 R~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
|+.||+.+|++||++++++|++++.++.+
T Consensus 378 Rl~Ppl~it~eeid~~l~~l~~~l~~~~~ 406 (408)
T PRK04612 378 RFVPALNLTDAELADGLARLRLALADYVA 406 (408)
T ss_pred EEcCCccCCHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999987654
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-63 Score=489.70 Aligned_cols=400 Identities=31% Similarity=0.519 Sum_probs=335.2
Q ss_pred CeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCC
Q 013204 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKM 95 (447)
Q Consensus 16 ~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 95 (447)
|+++++++|+++||.|||+||||.+++++++|||+||+|.+|+.++++++...+. ....++...++++++++.++ ...
T Consensus 26 ~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~~~~~~-~~~~~~~~~~la~~L~~~~~-~~~ 103 (433)
T PRK08117 26 NLPVVKGEGCYYYGVDGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGPS-GVIYYESILKLAEELAEITP-GGL 103 (433)
T ss_pred CceEEeeeeeEEEeCCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccc-cccCCHHHHHHHHHHHHhCC-CCC
Confidence 4899999999999999999999999999999999999999999999987644332 12467889999999999973 356
Q ss_pred CeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCC-ccccCCCCCCCCcceecCCCCccc
Q 013204 96 AKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGL-PALHQKFDLPAPFVLHTDCPHYWR 174 (447)
Q Consensus 96 ~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 174 (447)
++++|++||+|||+.|||+++.+ +++++||.++++|||++.++++.++. +.++..+....+.+.++++|+.++
T Consensus 104 ~~v~f~~SGseA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (433)
T PRK08117 104 DCFFFSNSGAEAIEGALKLAKHV------TKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDR 177 (433)
T ss_pred CEEEEeCcHHHHHHHHHHHHHHh------cCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCcccc
Confidence 79999999999999999999987 56789999999999999999877764 334444444345556677765443
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHh-hCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcc
Q 013204 175 YAHPGETEEEYSTRLANNLEDLILK-EGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRL 253 (447)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~le~~l~~-~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~ 253 (447)
.+.. ...+.+..++++++++++.. ..++++++||+||+++++|+++|+++||++|+++|++||++||+||||+||||+
T Consensus 178 ~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~ 256 (433)
T PRK08117 178 CPKG-EDPEVCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRT 256 (433)
T ss_pred cccc-CchhHHHHHHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCcc
Confidence 2211 12234455677888888764 234679999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcH
Q 013204 254 GTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNI 333 (447)
Q Consensus 254 g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~ 333 (447)
|..++.+++++.||++++||++++| +|+|++++++++++.+. ...+++|++++|+++++++++|+.++++++
T Consensus 257 G~~~~~~~~gv~pDi~t~sK~lg~G-~pigav~~~~~i~~~~~-------~~~~~~T~~~np~~~aaa~a~L~~l~~~~l 328 (433)
T PRK08117 257 GEWFAAQTFGVVPDIMTIAKGIASG-LPLSAVVASKELMEQWP-------LGSHGTTFGGNPVACAAALATLEVIKEEKL 328 (433)
T ss_pred ccchhHhhcCCCCCEeehhhhccCC-CcceeEEEcHHHHhhcc-------CCCCCCCCCcCHHHHHHHHHHHHHHHhccH
Confidence 9988888899999999999999988 79999999999998874 235677999999999999999999988889
Q ss_pred HHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC---CEE
Q 013204 334 VEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG---DNI 409 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g---~~i 409 (447)
.++++++++++++.|+++ ..++.+.++++.|.++++++.++... + .......+.+.++++|+++.+.+ +.+
T Consensus 329 ~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~Gl~~gi~~~~~~~~--~---~~~~~~~~~~~l~~~Gv~~~~~g~~~~~l 403 (433)
T PRK08117 329 LDNANEMGAYALERLEVLKEKHPVIGDVRGIGLMIGIEIVDPDGE--P---DGDAVEKILDKCLEKGLLFYLCGNAGNVL 403 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeeeecCCcEEEEEEecCCCC--c---chHHHHHHHHHHHHCCCEEeecCCCCCEE
Confidence 999999999999999988 56788889999999999999754311 0 11234567888999999987653 689
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 410 MMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 410 R~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
|++||+.+|+++|++++++|+++++++.
T Consensus 404 Rl~p~~~~t~~~i~~~~~~l~~~l~~~~ 431 (433)
T PRK08117 404 RMIPPLTVTKEEIDEGLDILDEALTEYE 431 (433)
T ss_pred EEeCCccCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998764
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-62 Score=483.36 Aligned_cols=404 Identities=28% Similarity=0.497 Sum_probs=335.5
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
.+|+++++++|+++||.|||+||||.+++++++|||+||+|.+|+.++++++...+.. ...+++..+++++|++..+ .
T Consensus 22 ~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~-~~~~~~~~~la~~L~~~~p-~ 99 (443)
T PRK08360 22 YYPLVPVKAENAKVWDIEGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIHYTPI-YGFPVEPLLLAEKLIEIAP-G 99 (443)
T ss_pred cCCceEEecceeEEEECCCCEEEEccccHhhcccCCCCHHHHHHHHHHHHhccCcccc-ccCcHHHHHHHHHHHHhCC-C
Confidence 5689999999999999999999999999999999999999999999999886544322 2357888999999999873 3
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCc-cccCCCCCCCCcceecCCCCc
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLP-ALHQKFDLPAPFVLHTDCPHY 172 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 172 (447)
..++++|++||+||++.|||+++.+ +++++|+.+.++|||++.++++.++.. .++..++. .+.+.++++|+.
T Consensus 100 ~~~~v~f~~sGsEAve~AlklAr~~------tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~-~~~~~~~~~~~~ 172 (443)
T PRK08360 100 DNPKVSFGLSGSDANDGAIKFARAY------TKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGE-LSDVHYIPYPDC 172 (443)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHh------cCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCC-CCCcEEEeCCcc
Confidence 4579999999999999999999988 567899999999999999998887743 33444444 344556666654
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHhh-CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCC
Q 013204 173 WRYAHPGETEEEYSTRLANNLEDLILKE-GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG 251 (447)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~le~~l~~~-~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g 251 (447)
.+.+.. ...+.....+++.+++.+... .++++++||+||+++++|.++++++|+++|.++|++||+++|+||||+|||
T Consensus 173 ~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 251 (443)
T PRK08360 173 YRCPFG-KEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLG 251 (443)
T ss_pred cccccc-CchhhhHHHHHHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 432221 111233334556677777542 346899999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh
Q 013204 252 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER 331 (447)
Q Consensus 252 ~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~ 331 (447)
++|..++++++++.||++++||++++| +|+|++++++++++.+. ...+.+|++++|+++++++++|+.++++
T Consensus 252 r~G~~~a~~~~~~~pDiitlsK~l~~G-~pigav~~~~~i~~~~~-------~~~~~~T~~~~p~~~aaa~a~l~~l~~~ 323 (443)
T PRK08360 252 RTGKWFAIEHFGVEPDIITLGKPLGGG-LPISATIGRAEIMDSLP-------PLAHAFTLSGNPVASAAALAVIEEIEEK 323 (443)
T ss_pred cCccchhhhhcCCCCCEEEecccccCC-ceeEEEEEcHHHHhhhc-------CCCCCCCCCcCHHHHHHHHHHHHHHHHc
Confidence 999888888889999999999999988 89999999999998885 2346679999999999999999999888
Q ss_pred cHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-CCEE
Q 013204 332 NIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-GDNI 409 (447)
Q Consensus 332 ~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-g~~i 409 (447)
++.++++++++++++.|+++ .+++++.++++.|+++++++.++.....+ ....+..+.+.|+++|+++.+. ++.+
T Consensus 324 ~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrg~Gl~~gie~~~~~~~~~~---~~~~~~~~~~~l~~~Gi~~~~~~~~~l 400 (443)
T PRK08360 324 NLLKRAEKLGNYTKKRLEEMKKKHELIGDVRGIGLMIGVDLVKDRETKER---AYEEAAKVVWRAWELGLIVTFFSGNVL 400 (443)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEecCCcccCc---cHHHHHHHHHHHHHCCeEEeecCCCEE
Confidence 99999999999999999988 56788899999999999999754322111 1113456888899999998764 5789
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 410 MMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 410 R~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
||+||+.+|+++|++++++|+++++.+++
T Consensus 401 r~~P~l~~t~~~id~~~~~l~~~l~~~~~ 429 (443)
T PRK08360 401 RIQPPLTIEKEVLDEGLDILEEAIEDVEE 429 (443)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999988764
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-63 Score=484.78 Aligned_cols=401 Identities=26% Similarity=0.456 Sum_probs=332.7
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
.++|+++++++|+++||.|||+||||.+++++.++||+||+|.+|+.++++++.... ....++++..++++++++..+.
T Consensus 13 ~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~~~~~~~-~~~~~~~~~~~la~~l~~~~p~ 91 (420)
T TIGR00700 13 VTLPVFAARAEGAILEDVDGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTHTC-FMVTPYEGYVALAEKLNRIAPG 91 (420)
T ss_pred CCCCeeEEeeeeeEEEeCCCCEEEECccCHHhccCCCCCHHHHHHHHHHHHhccCcc-ccccCChHHHHHHHHHHHhCCC
Confidence 457899999999999999999999999999999999999999999999998764322 1124677889999999998743
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCc-cccCCCCCCCCcceecCCCC
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLP-ALHQKFDLPAPFVLHTDCPH 171 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 171 (447)
.+.++++|++||+||++.|||+++.+ +++++||.|+++|||++.+++++++.. .++..++...+...++++|+
T Consensus 92 ~~~~~v~f~~sGseA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (420)
T TIGR00700 92 SGPKKSVFFNSGAEAVENAVKIARSY------TGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPY 165 (420)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHHHHh------cCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCc
Confidence 44579999999999999999999988 567889999999999999999887753 34555554444556667665
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHH-hhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCC
Q 013204 172 YWRYAHPGETEEEYSTRLANNLEDLIL-KEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250 (447)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~le~~l~-~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~ 250 (447)
.++.... .....+ ..+++.+++.+. ...++++++||+||+++++|.++++++|+++|+++|++||+++|+||||+||
T Consensus 166 ~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~ 243 (420)
T TIGR00700 166 PYRDGLL-DKQLST-DGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGF 243 (420)
T ss_pred ccccccc-ccchhH-HHHHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCC
Confidence 4432211 111122 234567777764 2345789999999999999999999999999999999999999999999999
Q ss_pred CccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh
Q 013204 251 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE 330 (447)
Q Consensus 251 g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~ 330 (447)
||+|..++++++++.||++++||++++| +|+|++++++++++.+. ...+.+|++++|++|++++++|+.+++
T Consensus 244 gr~g~~~a~~~~~~~pDi~~lsK~l~~G-~pig~v~~~~~i~~~~~-------~~~~~~T~~~~pl~~aaa~a~l~~l~~ 315 (420)
T TIGR00700 244 ARTGAMFACEHEGPEPDLITTAKSLADG-LPLSGVTGRAEIMDAPA-------PGGLGGTYAGNPLACAAALAVLAIIES 315 (420)
T ss_pred cccchhHHHhhcCCCCCEEEeeccccCC-cceEEEEecHHHHhhcC-------CCCcCCCCCcCHHHHHHHHHHHHHHHh
Confidence 9999988888899999999999999988 89999999999998875 224678999999999999999999988
Q ss_pred hcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee---C
Q 013204 331 RNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS---G 406 (447)
Q Consensus 331 ~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---g 406 (447)
+++.++++++++++++.|+++ ..++.+..+++.|+++++++.+... .. + .......+.+.|+++||++.++ +
T Consensus 316 ~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~-~~--~-~~~~~~~l~~~~~~~Gv~i~p~~~f~ 391 (420)
T TIGR00700 316 EGLIERARQIGRLVTDRLTTLKAVDPRIGDVRGLGAMIAVELVDPGT-TE--P-DAGLAERIATAAHAAGLLLLTCGMFG 391 (420)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhCCCEEEeeccceEEEEEEecCCC-CC--c-cHHHHHHHHHHHHHCCeEEeccCCCC
Confidence 899999999999999999988 5678888999999999998864311 11 1 1224566788889999999886 3
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 407 DNIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 407 ~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
+.+||+||+++++++|++++++|++++.
T Consensus 392 ~~lRl~p~l~~~~~~l~~~~~~l~~~l~ 419 (420)
T TIGR00700 392 NIIRFLPPLTIGDELLSEGLDILCAILA 419 (420)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence 6899999999999999999999999874
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-63 Score=465.43 Aligned_cols=400 Identities=27% Similarity=0.380 Sum_probs=326.2
Q ss_pred CCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHH
Q 013204 2 LAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLD 81 (447)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (447)
+.|-..+|... .+|+++++++|+++||+|||+|+||+++|+...|||+||.|.+|++++++++.. ++.|++...+
T Consensus 23 nspvra~~~v~-~~P~fi~~g~Ga~l~DvDGn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~~G~~----fg~Pte~Ei~ 97 (432)
T COG0001 23 NSPVRAFKSVG-GYPIFIERGKGAYLTDVDGNEYIDYVLGWGPLILGHAHPAVVEAVQEQLERGLS----FGAPTELEVE 97 (432)
T ss_pred CccccccCCCC-CCCeeEEeccCCeEEeCCCCEeeehhccCcccccCCCCHHHHHHHHHHHHhcCC----CCCCCHHHHH
Confidence 34555555553 699999999999999999999999999999999999999999999999998643 2669999999
Q ss_pred HHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCC----C
Q 013204 82 LAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQK----F 157 (447)
Q Consensus 82 l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~----~ 157 (447)
+++.+++.++ ..++|.|+||||||++.|||++|.+ ++|++||.|+++|||+....+...++..-..+ .
T Consensus 98 ~Aell~~~~p--~~e~vrfvnSGTEAtmsAiRlARa~------TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~ 169 (432)
T COG0001 98 LAELLIERVP--SIEKVRFVNSGTEATMSAIRLARAY------TGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSP 169 (432)
T ss_pred HHHHHHHhcC--cccEEEEecchhHHHHHHHHHHHHh------hCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCC
Confidence 9999999974 4579999999999999999999988 78999999999999997555553332111000 0
Q ss_pred CCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhc
Q 013204 158 DLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKY 237 (447)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~ 237 (447)
+++.....++ -.+..|+++.+++++...+ +++|+||+||+.++.|+++|+++||+.|+++|++|
T Consensus 170 Gvp~~~a~~t---------------i~~~yND~~al~~~~~~~g-~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~ 233 (432)
T COG0001 170 GVPADVAKHT---------------LVLPYNDLEALEEAFEEYG-DDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEH 233 (432)
T ss_pred CCChhhhccE---------------EEecCCCHHHHHHHHHHcC-CcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHc
Confidence 1111110000 0112234578888887643 68999999999999999999999999999999999
Q ss_pred CCEEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHH
Q 013204 238 DILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVS 317 (447)
Q Consensus 238 g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 317 (447)
|++||+|||+||| |.+..++..++|++||+.|+||.++|| +|+|++.+++++|+.+.. .+...+.+|+++||++
T Consensus 234 G~lLI~DEViTGF-R~~~gGaq~~~gi~PDlttlGKiIGGG-lP~ga~gGr~eiM~~~~p----~g~vyqaGT~sgnpla 307 (432)
T COG0001 234 GALLIFDEVITGF-RVALGGAQGYYGVEPDLTTLGKIIGGG-LPIGAFGGRAEIMEQLAP----LGPVYQAGTLSGNPLA 307 (432)
T ss_pred CcEEEEecchhhc-ccCCcccccccCcCcchhhhhhhhcCC-cceeeeccHHHHHhhhCC----CCCccccCCCCCcHHH
Confidence 9999999999999 888888999999999999999999999 799999999999998864 4567788999999999
Q ss_pred HHHHHHHHHHHhh-hcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCC--CCCcchHHHHHH
Q 013204 318 CAVAIEALKIYKE-RNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPF--PPEWGIGAYFGA 393 (447)
Q Consensus 318 ~~aa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~ 393 (447)
++|+.++|+.+.+ +..++++.+++++|++.|+++ .++.+...+...|.++.+.|.+....+... ..+......+.+
T Consensus 308 maAG~atl~~l~~~~~~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~ 387 (432)
T COG0001 308 MAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAERHGIPLTVNRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFH 387 (432)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeecceEEEEecCCCCCCHHHHHhhchHHHHHHHH
Confidence 9999999999887 458999999999999999987 677788889999999999988743211110 011122344556
Q ss_pred HHHHcCceEEeeC-CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 394 QCEKHGMLVRVSG-DNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 394 ~l~~~Gi~~~~~g-~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
.|+++||++.|.. +..-+| ..||+++|++++++++++++++.+
T Consensus 388 ~~l~~GV~l~ps~~ea~flS--~ahte~di~~~~~a~~~~~~~~~~ 431 (432)
T COG0001 388 HLLNRGVYLAPSQFEAGFLS--TAHTEEDIDRTLEAADEAFKELAG 431 (432)
T ss_pred HHHhCCcccCCccccceeee--cccCHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999886 556777 789999999999999999887653
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-62 Score=483.34 Aligned_cols=394 Identities=25% Similarity=0.431 Sum_probs=328.1
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
.+|+++++++|+++||.|||+||||.+++++.+|||+||+|.+|+.++++++.... ....++++..++++++++..+..
T Consensus 21 ~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~-~~~~~~~~~~~la~~l~~~~p~~ 99 (421)
T PRK06777 21 MCDFYAERAENATLWDVEGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTHTA-YQIVPYASYVTLAERINALAPID 99 (421)
T ss_pred CCCeeEEeeecCEEEeCCCCEEEEcccCHHhhccCCCCHHHHHHHHHHHhhccccc-ccccCChHHHHHHHHHHHhCCCC
Confidence 45899999999999999999999999999999999999999999999999864322 11246788899999999987433
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCc-cccCCCCCCCCcceecCCCCc
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLP-ALHQKFDLPAPFVLHTDCPHY 172 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 172 (447)
+.++++|++||+||++.|||+++.+ +++++||.|+++|||++.+++++++.. .++..+......+.++++|+.
T Consensus 100 ~~~~~~f~~sGseA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~ 173 (421)
T PRK06777 100 GPAKTAFFTTGAEAVENAVKIARAY------TGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNE 173 (421)
T ss_pred CCceEEEeCCcHHHHHHHHHHHHHh------hCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcc
Confidence 4679999999999999999999987 567889999999999999999887752 344444333334455555543
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHh-hCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCC
Q 013204 173 WRYAHPGETEEEYSTRLANNLEDLILK-EGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG 251 (447)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~le~~l~~-~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g 251 (447)
... .. ...+++++++++.. ..++++++||+||+++++|..+++++|+++|+++|++||+++|+||||+|||
T Consensus 174 ~~~----~~----~~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~g 245 (421)
T PRK06777 174 LHG----VS----VEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFA 245 (421)
T ss_pred ccC----cC----HHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCc
Confidence 210 00 12345677877754 2457899999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh
Q 013204 252 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER 331 (447)
Q Consensus 252 ~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~ 331 (447)
|+|..++++++++.||++++||++++| +|+|++++++++++.+.. ..+.+|++++|++|++++++|+.++++
T Consensus 246 r~g~~~~~~~~~~~pDiv~~sK~l~~G-~pigav~~~~~i~~~~~~-------~~~~~T~~~~p~~~aaa~a~L~~~~~~ 317 (421)
T PRK06777 246 RTGKLFAMEYYDVKPDLITMAKSLGGG-MPISAVVGRAEVMDAPAP-------GGLGGTYAGNPLAVAAALAVLDVIAEE 317 (421)
T ss_pred cCCchhhhhhcCCCCCEEeeehhhcCC-CceEEEEEcHHHHhccCC-------CCCCCCCCcCHHHHHHHHHHHHHHHhc
Confidence 999988889999999999999999987 899999999999988752 246679999999999999999999888
Q ss_pred cHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC---C
Q 013204 332 NIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG---D 407 (447)
Q Consensus 332 ~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g---~ 407 (447)
++.++++++++++++.|+++ .+++.+.++++.|+++++++..+.. .. ....+...+.+.++++||++.+++ +
T Consensus 318 ~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~~-~~---~~~~~~~~l~~~~~~~Gv~i~~~~~~g~ 393 (421)
T PRK06777 318 KLCQRALILGAHLVEVLEKAKASCPAIVDIRARGSMVAVEFNDPQT-GK---PSPEFTRQYQRQALEEGLLLLSCGVHGN 393 (421)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCceEEEEEEEecCcc-CC---ccHHHHHHHHHHHHhCCeEEeecCCCCC
Confidence 99999999999999999998 5678889999999999998864321 11 112245667788899999998864 6
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 408 NIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 408 ~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
.+||.||+++++++|++++++|++++.
T Consensus 394 ~lr~~ppl~i~~~~i~~~~~~l~~~l~ 420 (421)
T PRK06777 394 VIRFLYPLTIPDAQFSKALNILTRLLA 420 (421)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 899999999999999999999998874
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-62 Score=480.20 Aligned_cols=410 Identities=30% Similarity=0.518 Sum_probs=339.9
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHH
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (447)
+|+||...+. ...++.+++++|+++||.|||+||||.+++++.+|||+||+|.+++.++++++..... ...+++...
T Consensus 15 ~~~~~~~~~~--~~~~~~~~~a~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~-~~~~~~~~~ 91 (427)
T TIGR00508 15 IWHPYTSMSS--PLPVYPVESADGVELTLDDGRRLIDGMSSWWAAIHGYNHPRLNAAAQKQIDKMSHVMF-GGFTHKPAI 91 (427)
T ss_pred cccCccCccc--cCCCceEEeeeeeEEEeCCCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCccc-cccCCHHHH
Confidence 4777766642 2235678999999999999999999999999999999999999999999988643321 124678899
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCc-cccCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLP-ALHQKFDL 159 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~-~~~~~~~~ 159 (447)
++++++++.+ +.+.++++|++||+||++.|+|+++.++..++.+++.+||.|.++|||++.++++.++.. .++..+..
T Consensus 92 ~la~~l~~~~-~~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~ 170 (427)
T TIGR00508 92 ELCQKLVKMT-PNALDCVFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKG 170 (427)
T ss_pred HHHHHHHhhC-CCCCCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccc
Confidence 9999999987 345689999999999999999999998777777778999999999999999999887742 23333332
Q ss_pred CCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccc-cCCCCCccCChhHHHHHHHHHHhcC
Q 013204 160 PAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPV-IGAGGVIPPPATYFEKVQAVVKKYD 238 (447)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv-~~~~G~~~~~~~~l~~l~~l~~~~g 238 (447)
..+....+++|.. ++ ...+.+++++++++++... ++++++||+||+ +++||.++++.+||++|+++|++||
T Consensus 171 ~~~~~~~~~~p~~-~~------~~~~~~~~~~~l~~~l~~~-~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~ 242 (427)
T TIGR00508 171 YLPEQIFAPAPQN-RF------DEEWNEEAITPLAKLMELH-SDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYD 242 (427)
T ss_pred cCCCCeEcCCCCc-cc------cchhHHHHHHHHHHHHHhc-CCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcC
Confidence 2223334444321 00 0123455678888888643 457999999998 9999999999999999999999999
Q ss_pred CEEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHH
Q 013204 239 ILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSC 318 (447)
Q Consensus 239 ~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 318 (447)
+++|+||||+|+||+|..|+++++++.||++++||+++||++|++++++++++++.+.... ...+.+++||.++|+++
T Consensus 243 ~llI~DEv~tG~Gr~G~~~~~~~~~v~pDi~~~gK~l~gG~~p~~a~~~~~~~~~~~~~~~--~~~~~~~~T~~g~p~~~ 320 (427)
T TIGR00508 243 ILLIADEIATGFGRTGKLFACEHAGVVPDILCVGKALTGGYMTLSATVTTDKVAQTISSGE--AGCFMHGPTFMGNPLAC 320 (427)
T ss_pred CEEEEeccccCCCcCCccchhhhcCCCCCEEEechhhhcCcccceEEEEcHHHHHHHhcCC--CCccccCCCCCcCHHHH
Confidence 9999999999999999999999999999999999999999779999999999999886321 12345778999999999
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc
Q 013204 319 AVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH 398 (447)
Q Consensus 319 ~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 398 (447)
++++++|++++++++.+++++++++|++.|+++..++.+..+++.|+++++.+.++. ....+.++|+++
T Consensus 321 aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~vrg~G~~~~i~~~~~~-----------~~~~~~~~l~~~ 389 (427)
T TIGR00508 321 AVAEASLAILLEGEWQKQVSAIENQLKRELSPLRKNPVVKDVRVLGAIGVVEMYKPV-----------NVEELQKKFVEQ 389 (427)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhcCCCEEeEeccccEEEEEECCcc-----------CHHHHHHHHHHC
Confidence 999999999988899999999999999999998556667789999999999996432 134688899999
Q ss_pred CceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 399 GMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 399 Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
||++.+.++.+|++||+++|++|||+++++|++++.+
T Consensus 390 Gv~~~~~~~~l~~~ppl~~t~~~id~~~~~l~~~l~~ 426 (427)
T TIGR00508 390 GVWIRPFGKLIYVMPPYIITTEQLQKLTAALIEALHE 426 (427)
T ss_pred CeEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence 9999988888999999999999999999999999864
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=481.17 Aligned_cols=379 Identities=31% Similarity=0.555 Sum_probs=324.9
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
.+|+++++++|+++||.|||+||||.+++++++|||+||+|.+|+.++++++..... ..++++..++++++++..
T Consensus 16 ~~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~la~~L~~~~--- 90 (397)
T TIGR03246 16 PAPFIPVRGEGSRVWDQQGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWHIGN--GYTNEPVLRLAKKLVDAT--- 90 (397)
T ss_pred CCCceEEEeecCEEEeCCCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhcccccC--ccCCHHHHHHHHHHHhhC---
Confidence 578999999999999999999999999999999999999999999999987432221 346788999999999986
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcc
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYW 173 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
+.++++|++||+|||+.|||+++.++..++.+++++||.++++|||++.++++.++.+.++..+.........+++++
T Consensus 91 ~~~~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-- 168 (397)
T TIGR03246 91 FADKVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYND-- 168 (397)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCCCC--
Confidence 346999999999999999999998876554457889999999999999999888887655554443333333344332
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcc
Q 013204 174 RYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRL 253 (447)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~ 253 (447)
++++++.+. +++++||+||+++++|.++|+.+||++|+++|++||+++|+||||+|+||+
T Consensus 169 ----------------~~~l~~~l~----~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~ 228 (397)
T TIGR03246 169 ----------------LAAAKALIS----DKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRT 228 (397)
T ss_pred ----------------HHHHHHHhc----cCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCcc
Confidence 377777774 469999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcH
Q 013204 254 GTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNI 333 (447)
Q Consensus 254 g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~ 333 (447)
|..++++++++.||++++||+++|| +|+|++++++++++.+. ...+++||+++|+++++++++|+.++++++
T Consensus 229 G~~~a~~~~gv~pDi~t~~K~lggG-~pigav~~~~~i~~~~~-------~~~~~~t~~~~p~~~aaa~a~l~~~~~~~l 300 (397)
T TIGR03246 229 GELYAYMHYGVTPDILTSAKALGGG-FPIGAMLTTTEIAAHLK-------VGTHGTTYGGNPLACAVAGKVLDLVNTPEL 300 (397)
T ss_pred ccchhhhhcCCCCCEEEeehhhhCC-cceeEEEEcHHHHHhcc-------CCCcCCCCCCCHHHHHHHHHHHHHHhhccH
Confidence 9988888999999999999999987 89999999999998885 224667899999999999999999888889
Q ss_pred HHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEEE
Q 013204 334 VEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIMM 411 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR~ 411 (447)
.++++++++++++.|+++ .+++++.++++.|.++++++..... .....+.+.|+++|+++.+.+ +.+|+
T Consensus 301 ~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~---------~~~~~~~~~l~~~Gv~~~~~g~~~lR~ 371 (397)
T TIGR03246 301 LAGVKQRHDLFVDGLEKINARYNVFSEIRGKGLLIGAVLTEAYQ---------GKAKQFVNAAAEEGVIALIAGPNVVRF 371 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEeeecCceEEEEEEcCchh---------hHHHHHHHHHHHCCeEEeecCCCEEEE
Confidence 999999999999999998 5577888999999999998864210 125568899999999998776 68999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 412 SPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 412 ~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+||+.+|+++|++++++|++++.++
T Consensus 372 ~p~~~~t~~~i~~~~~~l~~~l~~~ 396 (397)
T TIGR03246 372 APSLVISDDDIDEGLARFERAIEQV 396 (397)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998753
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-63 Score=485.47 Aligned_cols=390 Identities=25% Similarity=0.445 Sum_probs=326.0
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT- 91 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~- 91 (447)
..+|+++++++|+++||.|||+||||.+++|+.+|||+||+|.+|+.+++++....+.. ...++...++++++++.+.
T Consensus 19 ~~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~-~~~~~~~~~lae~l~~~~~~ 97 (425)
T PRK09264 19 RSFPVVFDKAKGSWLYDEDGKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRDGITHGL-DMHTTAKREFLETFEETILK 97 (425)
T ss_pred CCCCccEEeeecCEEEeCCCCEeeecccchhhccCCCCCHHHHHHHHHHHHhccccccc-ccCcHHHHHHHHHHHHhhcC
Confidence 34789999999999999999999999999999999999999999999999874443332 3357888999999998752
Q ss_pred cCCCC-eEEEe-CChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCC
Q 013204 92 ASKMA-KVFFT-NSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDC 169 (447)
Q Consensus 92 ~~~~~-~v~~~-~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (447)
+.+.+ +++|+ +||+|||+.|||++|.+ +++.+||.|+++|||++.++++.++.+.++..++++...+.++|+
T Consensus 98 ~~~~~~~~~f~~~sGseA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~ 171 (425)
T PRK09264 98 PRGLDYKVQFTGPTGTNAVEAALKLARKV------TGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPY 171 (425)
T ss_pred CcCCCceEEEeCCCHHHHHHHHHHHHHHh------cCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCC
Confidence 22333 67675 89999999999999988 567899999999999999999998877666666666556667777
Q ss_pred CCcccCCCCCCChhHHHHHHHHHHHHHHHhhC--CCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhh
Q 013204 170 PHYWRYAHPGETEEEYSTRLANNLEDLILKEG--PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVI 247 (447)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~--~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~ 247 (447)
|+.++ . ..++++++++++.+.. ++++++||+||+++++|+++++++||++|+++|++||+++|+||||
T Consensus 172 ~~~~~-----~-----~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~ 241 (425)
T PRK09264 172 DGYFG-----G-----DVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQ 241 (425)
T ss_pred CCccc-----c-----chhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechh
Confidence 65321 0 1234577888886532 3579999999999999999999999999999999999999999999
Q ss_pred cCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHH-H
Q 013204 248 CAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEAL-K 326 (447)
Q Consensus 248 ~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l-~ 326 (447)
+||||+|..++++++++.||++++||+++++++|+|++++++++. .+. ...+.+||++||++++++++++ +
T Consensus 242 tG~GrtG~~~~~~~~~v~PDi~t~~K~l~~~G~pigav~~~~~i~-~~~-------~~~~~~T~~gnp~~~aaa~a~l~~ 313 (425)
T PRK09264 242 AGCGRTGTFFSFERAGITPDIVTLSKSISGYGLPMALVLIKPELD-VWK-------PGEHNGTFRGNNLAFVTATAALEE 313 (425)
T ss_pred hCCccccHHHHHhhcCCCCCEEEeccccCCCccceEEEEEchhhh-ccC-------CCccCCCCCCCHHHHHHHHHHHHH
Confidence 999999998899999999999999999998338999999998873 332 2246679999999999999999 6
Q ss_pred HHhhhcHHHHHHHHHHHHHHhHhhc-cCCCc-eeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEe
Q 013204 327 IYKERNIVEQVNKIAPKFQDGVKAF-SDSPI-IGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV 404 (447)
Q Consensus 327 ~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~-~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~ 404 (447)
+++++++.++++++++++++.|+++ .+++. +.++++.|+++++.+.+.. ....+.+.++++|+++.+
T Consensus 314 ~~~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl~~~i~l~~~~-----------~~~~l~~~~~~~Gv~~~~ 382 (425)
T PRK09264 314 YWSDDAFEKEVKAKGELVRERLEEIAAKYPGLGAEVRGRGMMQGIDFGDGE-----------LAGKIAAEAFENGLIIET 382 (425)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhCCCceecceecccEEEEEecChH-----------HHHHHHHHHHHCCCEEec
Confidence 6666789999999999999999887 45663 4788999999999986432 345688999999999987
Q ss_pred eC---CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 405 SG---DNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 405 ~g---~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
.+ .+|||+||+++|+++|++++++|+++++++.+
T Consensus 383 ~~~~~~~lr~~p~l~~t~~ei~~~~~~l~~~l~~~~~ 419 (425)
T PRK09264 383 SGPEDEVVKLLPPLTIDEEELEEGLDILEEAVAEVLA 419 (425)
T ss_pred cCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 64 68999999999999999999999999988644
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-63 Score=482.98 Aligned_cols=389 Identities=24% Similarity=0.397 Sum_probs=312.7
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHH--HhcCCcccccCcCCChHHHHHHHHHHH---
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQ--LNTLPFYHSFWNRTTKPSLDLAKELLE--- 88 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~--- 88 (447)
++|+++++++|+||||.|||+||||.+++|+.+|||+||+|++|+.++ ...+...+ ...+++..++++++.+
T Consensus 39 ~~p~~~~~a~G~~l~D~dG~~ylD~~sg~~~~~lGh~~p~i~~Ai~~q~~~~~l~~~~---~~~~~~~~~la~~l~~~l~ 115 (464)
T TIGR00699 39 HFLADYEKSRGNYLVDVDGNRLLDLYSQISSIPIGYNNPALLKAAQSPEMATTLINRP---ALGNFPSKDWAKILKEGIL 115 (464)
T ss_pred ccceEEEecccCEEEeCCCCEEEEccCCHhhhcCCCCCHHHHHHHHHHHHHHhhcccc---cCCcHHHHHHHHHHHHhHH
Confidence 679999999999999999999999999999999999999999999985 33332221 2356677888888854
Q ss_pred -hcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCC-------------------CC--cceEEEEcCCCccchhhhhc
Q 013204 89 -MFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGR-------------------PN--KKKFIARQKSYHGSTLIAAS 146 (447)
Q Consensus 89 -~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~-------------------~~--~~~vi~~~~~yhg~~~~~~~ 146 (447)
.. +.+.++|+|++||+|||+.|||+++.++..+++ ++ +.+||.|.++|||++.++++
T Consensus 116 ~~~-p~~~~~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als 194 (464)
T TIGR00699 116 KVA-PKGQDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLS 194 (464)
T ss_pred hhC-CCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHH
Confidence 43 345689999999999999999999988653221 12 34899999999999999999
Q ss_pred ccCCccccCCCCCCCCcceecCCCCcccCCCCC--CChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCCh
Q 013204 147 LSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPG--ETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPA 224 (447)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~ 224 (447)
.++.+.+... ..+.....++++|+ ++++... ...+....++++++++++.. .++++++||+||+++++|.++|++
T Consensus 195 ~t~~~~~~~~-~~~~~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~l~~l~~~l~~-~~~~iAAvI~EPv~g~~G~~~~~~ 271 (464)
T TIGR00699 195 TTRSKPIHKL-DIPAFDWPQAPFPS-LKYPLEEHVKENAKEEQRCLEEVEDLIKK-WHKPVAAIIVEPIQSEGGDNHASP 271 (464)
T ss_pred hcCCcccccc-CCCCCCceecCCCC-cccccccccccchhHHHHHHHHHHHHHHh-cCCcEEEEEEeCCCCCCCCcCCCH
Confidence 8886543332 23333445666664 2221110 11234455677888888864 345799999999999999999999
Q ss_pred hHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCC--CCeeeecccCC-CcccceeEEEeChhHHHHhhhccCC
Q 013204 225 TYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIK--PDLVSFAKALS-SAYMPIGAILVSPEVSEVIHSQSNT 301 (447)
Q Consensus 225 ~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~--~d~v~~sK~l~-gg~~~~g~~~~~~~~~~~~~~~~~~ 301 (447)
+||++|+++|++||++||+|||++||||+|..|+++++|+. ||++|+||+++ ||+ ++.+ +. +..
T Consensus 272 ~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PDi~t~gK~lg~gG~-----~~~~-~~---~~~---- 338 (464)
T TIGR00699 272 DFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVTFSKKFQTAGY-----FFHD-PA---FRP---- 338 (464)
T ss_pred HHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCCEEEehhhhccCCc-----cccc-hh---ccC----
Confidence 99999999999999999999999999999999999999997 99999999996 453 2222 21 211
Q ss_pred CCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc-cCCC-ceeeEe--eeeeEEEEEeecCCCC
Q 013204 302 LGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSP-IIGEIR--GTGLILGTEFADNKSP 377 (447)
Q Consensus 302 ~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~-~~~~~~--~~g~~~~i~~~~~~~~ 377 (447)
...+.+++||++||++|++++++|++++++++.+++++++++|++.|+++ .+++ .+.+++ |.|+++++++.+..
T Consensus 339 ~~~~~~~~T~~gnp~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~~~~-- 416 (464)
T TIGR00699 339 NKPYRQFNTWMGDPSRALILREIIQEIKRKDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTPDEA-- 416 (464)
T ss_pred CCCcccccCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEecCCHH--
Confidence 11345788999999999999999999999999999999999999999998 5678 788999 99999999885321
Q ss_pred CCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 378 NEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 378 ~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
....+.+.++++|+++...| +.|||.||+++|++||++++++|++++
T Consensus 417 ---------~~~~i~~~~~~~Gvl~~~~g~~~ir~~Ppl~it~~eid~~~~~l~~~~ 464 (464)
T TIGR00699 417 ---------KRDKLLKKARNNGVNIGGCGVKAIRLRPMLVFQKHHADIFLEIISKII 464 (464)
T ss_pred ---------HHHHHHHHHHHCCcEEecCCCCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 24568899999999998876 689999999999999999999998864
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-62 Score=484.66 Aligned_cols=409 Identities=27% Similarity=0.483 Sum_probs=335.9
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
..|+++++++|+++||.|||+||||.+++|+.+|||+||+|.+|+.++++++..... ....+++..+++++|++.++..
T Consensus 35 ~~~~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~-~~~~~~~~~~la~~L~~~~p~~ 113 (451)
T PRK06918 35 GIPTFAQSANGALVTDVDGNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQYIHTGF-NVMMYEPYIELAEKLAALAPGS 113 (451)
T ss_pred CCCceEEeccccEEEeCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHHhccCccc-cccccHHHHHHHHHHHHhCCCC
Confidence 357899999999999999999999999999999999999999999999987643321 1235788999999999997422
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCC-ccccCCCCCCCCcceecCCCCc
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGL-PALHQKFDLPAPFVLHTDCPHY 172 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
..++++|++||+||++.|||++|.+ +++.+||.|+++|||++.++++.++. ..++..+....+.+.++++|+.
T Consensus 114 ~~~~v~f~~sGseA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (451)
T PRK06918 114 FDKKVLFLNSGAEAVENAVKIARKY------TKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYE 187 (451)
T ss_pred CCCEEEEcCCcHHHHHHHHHHHHHH------hCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCcc
Confidence 2269999999999999999999988 46788999999999999999988774 3344445544455566777655
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHh-hCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCC
Q 013204 173 WRYAHPGETEEEYSTRLANNLEDLILK-EGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG 251 (447)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~le~~l~~-~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g 251 (447)
++.+. +...+.+...+++.+++.+.. ..++++++||+||+++++|.++|+++|+++|+++|++||+++|+|||++|||
T Consensus 188 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~g 266 (451)
T PRK06918 188 YRRPE-GLTEEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFA 266 (451)
T ss_pred ccccc-cCchHHHHHHHHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcC
Confidence 43221 112233444445566665532 2457899999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh
Q 013204 252 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER 331 (447)
Q Consensus 252 ~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~ 331 (447)
|+|..++++.+++.||++++||++++| +|+|++++++++++.+. ...+.+|++++|++++++.++|+.++++
T Consensus 267 r~g~~~a~~~~~v~pDi~t~sK~l~~G-~pig~v~~~~~i~~~~~-------~~~~~~T~~g~~l~~aaa~a~l~~i~~~ 338 (451)
T PRK06918 267 RTGKYFAIEHFDVVPDLITVSKSLGAG-VPISGVIGRKEIMDESA-------PGELGGTYAGSPLGCAAALAVLDIIEKE 338 (451)
T ss_pred ccCceehhHhcCCCCCEEeeehhhcCC-CccEEEEEcHHHHhccC-------CCCcCcCCCcCHHHHHHHHHHHHHHHHC
Confidence 999888888899999999999999988 89999999999998874 2246789999999999999999999888
Q ss_pred cHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC---C
Q 013204 332 NIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG---D 407 (447)
Q Consensus 332 ~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g---~ 407 (447)
++.++++++++++++.|+++ .+++.+.++++.|+++++.+..+..... + .......+.+.|+++||++.+.+ +
T Consensus 339 ~~~~~~~~~g~~l~~~l~~l~~~~~~~~~vrg~G~~~~~~~~~~~~~~~--~-~~~~~~~l~~~~~~~Gvlv~~~~~~~~ 415 (451)
T PRK06918 339 NLNDRAIELGKVVMNRFEEMKNKYNCIGDVRGLGAMCAFELVQDRKTKE--P-DKTLTANICKEANKRGLLLLSAGTYGN 415 (451)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCCceeeccceeEEEEEEccCCCcCC--C-cHHHHHHHHHHHHHCCeEEeecCCCCC
Confidence 99999999999999999988 5677888899999999988853221111 1 11235667888899999998864 7
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 013204 408 NIMMSPPFIMSPEEVDELISKYGKALKATEERVK 441 (447)
Q Consensus 408 ~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~~ 441 (447)
.+||+||+.+++++|++++++|+++++++.++-+
T Consensus 416 ~lrl~p~l~~t~~~id~~l~~l~~~l~~~~~~~~ 449 (451)
T PRK06918 416 VIRVLMPLVITDEQLEEGLTIIEESLQACYEKAN 449 (451)
T ss_pred EEEEECCCccCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999999999999988765543
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=481.78 Aligned_cols=385 Identities=25% Similarity=0.443 Sum_probs=323.7
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-c
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-A 92 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~ 92 (447)
.+|+++++++|+++||.|||+||||.+++++.+|||+||+|.+|+.+++++....+.. ...++...++++++++... +
T Consensus 16 ~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~-~~~~~~~~~lae~l~~~~~~~ 94 (412)
T TIGR02407 16 SFPTVFEKAKGSTLWDEDGKEYIDFFAGAGALNYGHNNPKLKQALIDYLADDGIIHSL-DMATEAKREFLETFNEIILKP 94 (412)
T ss_pred CCCceEEecccCEEEeCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhccceecc-ccCcHHHHHHHHHHHHhccCc
Confidence 4789999999999999999999999999999999999999999999999864443322 2357888999999998752 2
Q ss_pred CCC-CeEEEe-CChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC
Q 013204 93 SKM-AKVFFT-NSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP 170 (447)
Q Consensus 93 ~~~-~~v~~~-~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (447)
.+. ++++|+ +||+|||+.|||+++.+ +++++||.|+++|||++.++++.++.+.++..++.+...+..+|++
T Consensus 95 ~~~~~~~~f~~~sGseA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~ 168 (412)
T TIGR02407 95 RGLDYKVQFPGPTGTNAVESALKLARKV------TGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYD 168 (412)
T ss_pred cCCCceEEEeCCCchHHHHHHHHHHhhh------cCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCC
Confidence 222 256664 89999999999999987 5678999999999999999999988776677676665555666665
Q ss_pred CcccCCCCCCChhHHHHHHHHHHHHHHHhhC--CCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc
Q 013204 171 HYWRYAHPGETEEEYSTRLANNLEDLILKEG--PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC 248 (447)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~--~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~ 248 (447)
+... . ..++++.+++.+.+.. .+++++||+||+++++|.++|+++||++|+++|++||+++|+|||++
T Consensus 169 ~~~~---~-------~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t 238 (412)
T TIGR02407 169 GYLG---G-------DVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQA 238 (412)
T ss_pred Cccc---c-------chhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh
Confidence 4321 0 1234567888776432 25789999999999999999999999999999999999999999999
Q ss_pred CCCccccccccccCCCCCCeeeecccCCC-cccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHH
Q 013204 249 AFGRLGTMFGCDKYSIKPDLVSFAKALSS-AYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKI 327 (447)
Q Consensus 249 g~g~~g~~~~~~~~~~~~d~v~~sK~l~g-g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~ 327 (447)
||||+|+.|+++++++.||++++||++++ | +|+|++++++++ +.+. ...+++||++||++|+++.++++.
T Consensus 239 G~GRtG~~~a~~~~~v~PDi~~~~K~lg~~G-~pigav~~~~~~-~~~~-------~~~~~~T~~gnpl~~aaa~a~l~~ 309 (412)
T TIGR02407 239 GCGRTGTFFSFEPAGIEPDIVCLSKSISGYG-LPLALTLIKPEL-DVWK-------PGEHNGTFRGNNLAFVTATAALEY 309 (412)
T ss_pred CCCccchhHHhcccCCCCCEEEechhccCCc-cceeEEEEchhh-hccC-------CCccCCCCCccHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 6 899999999886 5442 235778999999999999999995
Q ss_pred -HhhhcHHHHHHHHHHHHHHhHhhc-cCCC-ceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEe
Q 013204 328 -YKERNIVEQVNKIAPKFQDGVKAF-SDSP-IIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV 404 (447)
Q Consensus 328 -~~~~~~~~~~~~~~~~l~~~L~~l-~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~ 404 (447)
++++++.++++++++++++.|+.+ ..++ .+.++++.|+++++.+.+.. ....+.+.|+++||++.+
T Consensus 310 ~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl~~~l~l~~~~-----------~~~~~~~~~~~~Gv~v~~ 378 (412)
T TIGR02407 310 YWSDDAFEKAVQRKSEIIQERLDRIVAEYPELIKQVRGRGLMQGIECGDGD-----------LAGKIAKAAFENGLIIET 378 (412)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHhhCCCceEeeecceeEEEEEecChH-----------HHHHHHHHHHHCCCEEec
Confidence 777789999999999999999987 5565 56889999999999996532 245688899999999976
Q ss_pred eC---CEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 405 SG---DNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 405 ~g---~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
.+ +.||++||+.+|++++++++++|++++++
T Consensus 379 ~~~~~~~lr~~p~l~~t~~~i~~~~~~l~~~l~~ 412 (412)
T TIGR02407 379 SGPNDEVIKLLPPLTIDEETLQQGLDILEQAVEE 412 (412)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHhC
Confidence 54 67999999999999999999999999863
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-62 Score=482.83 Aligned_cols=404 Identities=24% Similarity=0.363 Sum_probs=320.0
Q ss_pred CCCCCeE--EEEecCcEEEeC-CCCEEEecCCccccccCCCCCHHHHH--HHHHHHhcCCccc-ccCcCCChHHHHHHHH
Q 013204 12 TDVHPLV--IEKSEGSYVYDV-NGKKYLDSLAGLWCTALGGSEPRLVA--AATAQLNTLPFYH-SFWNRTTKPSLDLAKE 85 (447)
Q Consensus 12 ~~~~~~~--~~~~~g~~~~d~-dg~~~lD~~~~~~~~~lG~~~p~v~~--a~~~~~~~~~~~~-~~~~~~~~~~~~l~~~ 85 (447)
+.++|++ +.+++|+++||. |||+||||.+++|+++|||+||+|.+ ++.+++.+..+.+ ......++...+++++
T Consensus 21 ~~~~p~~~~i~~a~G~~l~D~~dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~~~~~~~~~~la~~ 100 (443)
T PRK08297 21 VDGFDLVLDLERSQGSYLVDARTGRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAALNKPSNSDVYTVEMARFVDT 100 (443)
T ss_pred hcCCCcceEEEeccCCEEEECCCCCEeeecccCHhhhcCCCCChHHhhHHHHHHHHHHhhhhccccCCcCCHHHHHHHHH
Confidence 3456655 799999999995 99999999999999999999999999 9999998754211 1223568889999999
Q ss_pred HHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHH----hcCC--CCcceEEEEcCCCccchhhhhcccCCccccCCCCC
Q 013204 86 LLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN----ALGR--PNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDL 159 (447)
Q Consensus 86 l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~----~~~~--~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 159 (447)
+.+...+.+.++|+|++||+|||+.|||++++|+. .+|+ +++.+||.|.++|||++.++++.++.+........
T Consensus 101 l~~~~~p~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~ 180 (443)
T PRK08297 101 FARVLGDPELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFP 180 (443)
T ss_pred HHhhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCC
Confidence 99886334568999999999999999999998853 2454 35689999999999999999998875432222111
Q ss_pred CCCcceecCCCCcccCCCCCC---ChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHh
Q 013204 160 PAPFVLHTDCPHYWRYAHPGE---TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKK 236 (447)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~ 236 (447)
. ....+++.|.. .++.+.. +.+.+..++++++++++.. .++++++||+||+++++|+++|+++||++|+++|++
T Consensus 181 ~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~ 257 (443)
T PRK08297 181 K-FDWPRIDNPKL-RFPLPGEDLEEVEALEAEALAQARAAFER-HPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDE 257 (443)
T ss_pred C-CCccccCCCCC-CCCCcccccchhhHHHHHHHHHHHHHHHh-CCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHH
Confidence 1 11112222221 1111111 1344555677888888865 457899999999999999999999999999999999
Q ss_pred cCCEEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHH
Q 013204 237 YDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPV 316 (447)
Q Consensus 237 ~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 316 (447)
||+++|+|||+|||||+|..|+++++++.||++++||+++ +|+++.++++.+.+...-. ....+++||++||+
T Consensus 258 ~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~-----~~a~l~~~~i~~~~~~~~~--~~~~~~~T~~gnpl 330 (443)
T PRK08297 258 HDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIVAFGKKTQ-----VCGIMAGRRVDEVEDNVFA--VSSRINSTWGGNLV 330 (443)
T ss_pred cCCEEEEechhhccCccchHHHHHhcCCCCCEEEeccccc-----ccceecchHHHHhhhhhcc--CccccCCCCCccHH
Confidence 9999999999999999999999999999999999999974 3445555555433211000 01247789999999
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc-cCCCcee-eEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHH
Q 013204 317 SCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIG-EIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQ 394 (447)
Q Consensus 317 ~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~-~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (447)
+|++++++|++++++++.++++++++++++.|+++ .+++.+. +++|.|+++++++.+.. ....+.+.
T Consensus 331 ~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vrg~G~~~~i~~~~~~-----------~~~~~~~~ 399 (443)
T PRK08297 331 DMVRARRILEVIEEDGLVENAARQGEYLLARLEELAAEFPAVVSNVRGRGLMCAFDLPTTA-----------DRDEVIRR 399 (443)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHCCCcceeeeccceEEEEEecCHH-----------HHHHHHHH
Confidence 99999999999998999999999999999999998 5677554 89999999999986421 24568889
Q ss_pred HHHcCceEEeeC-CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 395 CEKHGMLVRVSG-DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 395 l~~~Gi~~~~~g-~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
|+++|+++.+.+ +.+||+||+.+|+++|++++++|+++++++
T Consensus 400 l~~~Gvl~~~~~~~~lr~~P~l~~t~~eid~~l~~l~~~l~~~ 442 (443)
T PRK08297 400 LWEEGVLVLPCGERSIRFRPALTVTTEEIDAAIDALRRALPEV 442 (443)
T ss_pred HHHCCEEEecCCCCeEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence 999999998876 679999999999999999999999998765
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-62 Score=481.08 Aligned_cols=394 Identities=26% Similarity=0.425 Sum_probs=328.7
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
.+|+++++++|++|||.|||+||||.+++|+.+|||+||+|.+|+.++++++...+ .....+++..++++++++..+..
T Consensus 21 ~~~~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~-~~~~~~~~~~~la~~l~~~~p~~ 99 (421)
T PRK09792 21 MCNFFAQSAENATLKDVEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTA-YQIVPYESYVTLAEKINALAPVS 99 (421)
T ss_pred CCCeeEEeccccEEEeCCCCEEEEccCchhhhcCCCCCHHHHHHHHHHHHhccCcc-cCccCCHHHHHHHHHHHHhCCCC
Confidence 34789999999999999999999999999999999999999999999998754322 12346888999999999986433
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCC-ccccCCCCCCCCcceecCCCCc
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGL-PALHQKFDLPAPFVLHTDCPHY 172 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
+.++++|++||+||++.|||+++.+ +++.+||.|.++|||++.++++.++. +.++.++......+..+++|..
T Consensus 100 ~~~~~~f~~sGseA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~ 173 (421)
T PRK09792 100 GQAKTAFFTTGAEAVENAVKIARAH------TGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSD 173 (421)
T ss_pred CCceEEEeCChHHHHHHHHHHHHHh------cCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcc
Confidence 4569999999999999999999977 56788999999999999999988775 2345454443334455666543
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHhh-CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCC
Q 013204 173 WRYAHPGETEEEYSTRLANNLEDLILKE-GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG 251 (447)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~le~~l~~~-~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g 251 (447)
.+ . ....++++.+++.+.+. .++++++|++||+++++|.++++++|+++|+++|++||+++|+|||++|||
T Consensus 174 ~~----~----~~~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~g 245 (421)
T PRK09792 174 LH----G----ISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFA 245 (421)
T ss_pred cc----c----ccHHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 21 0 11234567788877642 346799999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh
Q 013204 252 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER 331 (447)
Q Consensus 252 ~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~ 331 (447)
|+|..++++++++.||+++|||++++| +|+|++++++++++.+.. ..+.+|+++||++|+++++++++++++
T Consensus 246 r~G~~~a~~~~~~~pDi~t~gK~l~~G-~pigav~~~~~i~~~~~~-------~~~~~T~~gnpl~~aaa~a~l~~l~~~ 317 (421)
T PRK09792 246 RTGKLFAMDHYADKPDLMTMAKSLAGG-MPLSGVVGNANIMDAPAP-------GGLGGTYAGNPLAVAAAHAVLNIIDKE 317 (421)
T ss_pred CCCchhHHHhcCCCCcEEEeehhhcCC-CceEEEEEcHHHHhccCC-------CCcCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 999988999999999999999999998 799999999999988752 246789999999999999999999888
Q ss_pred cHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee---CC
Q 013204 332 NIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS---GD 407 (447)
Q Consensus 332 ~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---g~ 407 (447)
++.++++++++++++.|+++ .+++.+..++|.|+++++++.+... ..+ .......+.+.|+++|+++.+. ++
T Consensus 318 ~~~~~~~~~g~~l~~~l~~l~~~~p~v~~vrG~Gl~~~ie~~~~~~-~~~---~~~~~~~l~~~~~~~Gv~i~~~g~~~~ 393 (421)
T PRK09792 318 SLCERANQLGQRLKNTLIDAKESVPAIAAVRGLGSMIAAEFNDPQT-GEP---SAAIAQKIQQRALAQGLLLLTCGAYGN 393 (421)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCcceecccceEEEEEecCCcc-CCc---chHHHHHHHHHHHHCCcEEeecCCCCC
Confidence 89999999999999999998 5678888999999999999975321 110 1123566888999999999754 36
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 408 NIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 408 ~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
.|||.||+++++++|++++++|++++.
T Consensus 394 ~irl~P~l~i~~~ei~~~~~~l~~~l~ 420 (421)
T PRK09792 394 VIRFLYPLTIPDAQFDAAMKILQDALS 420 (421)
T ss_pred EEEEeCCCcCCHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999874
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=447.33 Aligned_cols=401 Identities=29% Similarity=0.424 Sum_probs=324.0
Q ss_pred CCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHH
Q 013204 2 LAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLD 81 (447)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (447)
|++.+.+...-..+|+++.+++|+.++|.||++|+||.++||+..+||+||++.+++.+++.++.+. .....+.+..+
T Consensus 25 ~~~~~~~~~t~a~~pv~~~~gkg~kl~D~~g~EyiD~~ssw~~~~~Ghanpev~ral~~q~~k~~hs--~~~~~t~eav~ 102 (433)
T KOG1401|consen 25 VEEKTRIVSTYARYPVVIESGKGSKLFDPDGKEYIDFTSSWAVTILGHANPEVARALAEQAKKLGHS--SNGYFTLEAVE 102 (433)
T ss_pred cccceEEeeecCCCceeeecceeeeeecCCcceeeeeccceeccccCCCCHHHHHHHHHHHhhheec--cCccccHHHHH
Confidence 4444555555677899999999999999999999999999999999999999999999999886443 33345556889
Q ss_pred HHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCC
Q 013204 82 LAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPA 161 (447)
Q Consensus 82 l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~ 161 (447)
+++.+.+-......++|+|++||||||+.|||++|+.+..+...++.++|.|+++|||.++++++.++...|+.++++..
T Consensus 103 l~~~l~~~~~~~~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~ 182 (433)
T KOG1401|consen 103 LEEVLSAVLGKGSAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIA 182 (433)
T ss_pred HHHHHHhcccCCCccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCC
Confidence 99999888755688999999999999999999999886554434446799999999999999999998888877776655
Q ss_pred CcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEE
Q 013204 162 PFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILF 241 (447)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~l 241 (447)
+.+....+- +...+++++..++ +.+++||+||+++.||.++++++||..|+++|+++|++|
T Consensus 183 p~v~~~~yn------------------d~t~l~k~~~~h~-~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~ 243 (433)
T KOG1401|consen 183 PDVVTAEYN------------------DSTALEKLFESHK-GEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLL 243 (433)
T ss_pred CceeecccC------------------CHHHHHHHHHhCC-CceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceE
Confidence 444332221 2488888887654 579999999999999999999999999999999999999
Q ss_pred EEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHH
Q 013204 242 IADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVA 321 (447)
Q Consensus 242 i~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa 321 (447)
|+|||+|||||+|..|++++++++|||.|++|.|+|| +|+|++++++++++.+.... .+.|++||++||++|.++
T Consensus 244 I~DEV~tG~gR~g~~~a~e~~~~~PDI~t~aK~L~gG-lPigA~~v~~kV~~~i~~~~----~l~hg~Tf~gnpLacsa~ 318 (433)
T KOG1401|consen 244 IFDEVQTGLGRLGYGWAQEYFGVTPDITTVAKPLGGG-LPIGATGVRDKVAEMISPGD----HLYHGGTFSGNPLACSAG 318 (433)
T ss_pred EeehhhhCccccchHHHHHHhCcCCcceeehhhccCC-ceeEEEeehHHHHhhcCCCC----ccccCcccCCChhhhhHH
Confidence 9999999999999999999999999999999999999 89999999999999997542 478899999999999999
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHhHhhc-cCCCceeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcC
Q 013204 322 IEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHG 399 (447)
Q Consensus 322 ~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 399 (447)
..+++.+.+++.+.++.+.++.|++.+.+. .+.+..... .++|.++++.+..+..... + .......+...+
T Consensus 319 ~~~l~~l~~~e~~k~vs~~~k~L~~~l~e~~~~~~~~i~g~~grgl~ig~~~~~p~~~~~---d----~~~~~~ll~~~~ 391 (433)
T KOG1401|consen 319 IKVLDELKDPETLKNVSKIGKELRKLLDEYLKKTPNSICGGVGRGLVIGFEFEGPVYKFA---D----AAREQGLLILTL 391 (433)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccCCCceeeeeeeEEEEEEEEeechhhhh---h----hhhhhhHHHHHH
Confidence 999999999999999999999999999776 555543333 7888888887766432111 0 001111122222
Q ss_pred ceEEeeCCEEEEec--CCC--CCHHHHHHHHHHHHHHHHHH
Q 013204 400 MLVRVSGDNIMMSP--PFI--MSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 400 i~~~~~g~~iR~~~--~~~--~t~e~i~~~~~~l~~~l~~~ 436 (447)
....+. ..+|+.| .+. +++|.++++++++.+.+.++
T Consensus 392 ~~~~~~-~gv~i~P~~~l~~~~~~E~i~~~l~i~~~~l~~~ 431 (433)
T KOG1401|consen 392 GKGLLE-EGVRIAPIYLLTVEHTPEVIQRLLTILEKVLSAL 431 (433)
T ss_pred hccccc-ceEEEeccccccccCcHHHHHHHHHHHHHHHHHh
Confidence 111111 4577777 333 45899999999999988775
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-62 Score=522.50 Aligned_cols=399 Identities=27% Similarity=0.469 Sum_probs=330.9
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
.+|+++++++|++|||.|||+||||.+++ .++||+||+|.+|+.++++++...+ ...++...++++++++.++ .
T Consensus 605 ~~p~~i~~g~G~~l~D~dG~~ylD~~~g~--~~lGH~hp~v~~Ai~~q~~~l~~~~---~~~~~~~~~lAe~L~~~~p-~ 678 (1013)
T PRK06148 605 SDPIKFVRGWGVWLIDNRGRAYLDCFNNV--CHVGHAHPRVVAAAARQAARLNTNT---RYLHDAIVAYAERLTATLP-D 678 (1013)
T ss_pred CCCceEEEeeecEEEECCCCEEEEcccCh--hhcCCCCHHHHHHHHHHHhhcCCcC---CcCCHHHHHHHHHHHHhCC-C
Confidence 56899999999999999999999999884 7899999999999999998753322 3468899999999999874 3
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCC-CCcceecCCCCc
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP-APFVLHTDCPHY 172 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 172 (447)
+.++++|++||||||+.|||++|.+ +++++||.|+++|||++.+++++++.. ++..+... ...+..++.|+.
T Consensus 679 ~~~~v~f~nSGsEA~e~AlklAr~~------tGr~~ii~~~~~YHG~t~~a~s~s~~~-~~~~~~~~~~~~~~~~~~p~~ 751 (1013)
T PRK06148 679 GLTVAFFVNSGSEANSLALRLARAH------TGQRDAIVLDHAYHGTTTELIDLSPYK-FNRKGGKGRPDHVEVAEVPDS 751 (1013)
T ss_pred CcCEEEEeCCcHHHHHHHHHHHHHh------cCCCeEEEEcCCccCCCcchhhcCchh-hcccCCCCCCCCceEcCCCCc
Confidence 5679999999999999999999988 567899999999999999999887733 23332211 123344555544
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHh--hCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCC
Q 013204 173 WRYAHPGETEEEYSTRLANNLEDLILK--EGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250 (447)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~le~~l~~--~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~ 250 (447)
++.++.. ..+......++++++.+.. ..++.+++||+||+++++|+++|+++||++++++|++||+++|+|||||||
T Consensus 752 ~~~~~~~-~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGf 830 (1013)
T PRK06148 752 YRGPERW-PDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGF 830 (1013)
T ss_pred cccCCCC-ChhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCC
Confidence 4433221 1122334445667766643 234679999999999999999999999999999999999999999999999
Q ss_pred Ccccc-ccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh
Q 013204 251 GRLGT-MFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK 329 (447)
Q Consensus 251 g~~g~-~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~ 329 (447)
||+|. .|+++++|+.||++|+||+|+|| +|+|++++++++++.+.. ...+++||++||++|++++++|++++
T Consensus 831 GRtG~~~~a~e~~gv~PDivt~gK~lggG-~Plgav~~~~ei~~~~~~------g~~~~~Tf~gnpla~aaa~a~L~~i~ 903 (1013)
T PRK06148 831 GRVGSHWWAFETQGVVPDIVTMGKPIGNG-HPMGAVVTTREIADSFDN------GMEYFNTFGGNPVSCAIGLAVLDIIE 903 (1013)
T ss_pred CCCCCcchhhhhcCCCcceeeecccccCC-cceEEEEEcHHHHhhccC------CCccccCCCCCHHHHHHHHHHHHHHh
Confidence 99997 78999999999999999999999 799999999999998852 12356899999999999999999999
Q ss_pred hhcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC--
Q 013204 330 ERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-- 406 (447)
Q Consensus 330 ~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-- 406 (447)
++++.+++++++++|++.|+++ .+++++.+++|.|+++++++..+..+..+ ....+..+.+.|+++||++.+.|
T Consensus 904 ~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Gl~~gvel~~~~~~~~~---~~~~~~~i~~~~~~~Gvl~~~~g~~ 980 (1013)
T PRK06148 904 DEDLQRNALEIGNYLLAGLRELQDRFDIIGDVRGMGLFLGIELVTDRKTKAP---ATAIARYVKNGARERGILIGTEGPH 980 (1013)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHhCCCceEEeeeceEEEEEecCCccccCc---cHHHHHHHHHHHHhCCeEEeccCCC
Confidence 9999999999999999999998 67899999999999999999754322211 11235668899999999998754
Q ss_pred -CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 407 -DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 407 -~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+.+||.||+++|+++||+++++|++++.++
T Consensus 981 ~~vlr~~Ppl~it~~~id~~l~~l~~~l~~~ 1011 (1013)
T PRK06148 981 DNVLKIRPPLIFSRADADHLLEVLDDVLAAA 1011 (1013)
T ss_pred CCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999764
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-62 Score=475.80 Aligned_cols=374 Identities=28% Similarity=0.464 Sum_probs=311.6
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
...|+++++++|+++||.|||+||||.+++++++|||+||+|.+|+.+++++....+. ...+++..++++++.+..
T Consensus 16 ~~~~~~~~~~~G~~~~d~dG~~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~~~~~~~~--~~~~~~~~~la~~l~~~~-- 91 (395)
T PRK03715 16 NRPDIVFTHGKGSWLYDHNGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLINPSP--AFYNEPMAKLAGLLTQHS-- 91 (395)
T ss_pred CCCCceEEeeecCEEEECCCCEEEECCcChhhccCCCCCHHHHHHHHHHHHhcccccc--cccCHHHHHHHHHHhhcc--
Confidence 3467899999999999999999999999999999999999999999999987543322 235778889999998763
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCc
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHY 172 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
+.++++|++||+|||+.|+|+++.++.. +.+++++||.++++|||++.++++.++.+.++..+......+.+.++
T Consensus 92 -~~~~v~f~~SGseA~e~Aik~ar~~~~~-~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~--- 166 (395)
T PRK03715 92 -CFDKVFFANSGAEANEGAIKLARKWGRK-HKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAEL--- 166 (395)
T ss_pred -CCCEEEEeCCcHHHHHHHHHHHHHHhhc-cCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCC---
Confidence 4579999999999999999999987542 33567899999999999999999988866554433322222222211
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc
Q 013204 173 WRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252 (447)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~ 252 (447)
++++++++.+. +++++||+||+++++|.++|+++|+++|+++|++||+++|+||||+||||
T Consensus 167 ---------------~d~~~l~~~l~----~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GR 227 (395)
T PRK03715 167 ---------------NDIASVEKLIT----DKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGR 227 (395)
T ss_pred ---------------chHHHHHHHcC----CCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCC
Confidence 12466776664 46899999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhc
Q 013204 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERN 332 (447)
Q Consensus 253 ~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~ 332 (447)
+|+.|+++++++.||++|+||+++|| +|+|+++++++++. +. ...+++||+++|++|++++++|+++++++
T Consensus 228 tG~~~a~~~~gv~PDi~t~gK~lg~G-~p~~av~~~~~i~~-~~-------~~~~~~T~~g~pl~~aaala~L~~l~~~~ 298 (395)
T PRK03715 228 TGTLFAYELSGIEPDIMTLGKGIGGG-VPLAALLAKAEVAV-FE-------AGDQGGTYNGNPLMTAVGVAVISQLLAPG 298 (395)
T ss_pred CcchhhHhhcCCCCceeeehhhhhCC-cceEEEEEcccccc-cc-------CCCcCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999 79999999999863 22 12467899999999999999999999889
Q ss_pred HHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc---CceEEee-CC
Q 013204 333 IVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH---GMLVRVS-GD 407 (447)
Q Consensus 333 ~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---Gi~~~~~-g~ 407 (447)
+.+++++++++|++.|+++ .+++ +..++|.|+++++++.++. ...+.+.+.+. |+++... ++
T Consensus 299 l~~~~~~~g~~l~~~L~~l~~~~~-i~~vrG~Glm~~i~l~~~~------------~~~~~~~~~~~~~~Gi~~~~~~~~ 365 (395)
T PRK03715 299 FLEGVRARGEYLKEKLLELSEERG-LEGERGEGLLRALLLGKDI------------GPQIVEKARDMQPDGLLLNAPRPN 365 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCC-cCeEEcceeEEEEEecCch------------HHHHHHHHHhccCCCEEEeecCCC
Confidence 9999999999999999988 4455 5678999999999986531 22344555555 9998754 47
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 408 NIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 408 ~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.+||+||+++|+++|++++++|+++++++
T Consensus 366 ~lR~~p~l~~t~~ei~~~~~~l~~~l~~~ 394 (395)
T PRK03715 366 LLRFMPALNVTTEEIDQMIAMLRSVLDKL 394 (395)
T ss_pred EEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999764
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-62 Score=466.08 Aligned_cols=356 Identities=26% Similarity=0.483 Sum_probs=306.8
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
..|+++.+++|+|+||.|||+||||.++++++++||+||+|.+|+.+++++...... ...+++..+++++++++.
T Consensus 5 ~~~~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~--~~~~~~~~~la~~l~~~~--- 79 (364)
T PRK04013 5 RKRLRLVRGEGIYVWDSQGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVVAGP--MFEHEEKEEMLEELSKWV--- 79 (364)
T ss_pred CCCccEEEeecCEEEECCCCEEEEcccChhhccCCCCCHHHHHHHHHHHHhcCCccC--CcCCHHHHHHHHHHHhhc---
Confidence 357889999999999999999999999999999999999999999999998654332 346889999999999885
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcc
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYW 173 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
+.++++|++||+||++.|+|+++.+ +++++||.++++|||++.++++.++.+.++..+......+..+++++
T Consensus 80 ~~~~v~~~~SGseA~e~Alklar~~------~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~~d-- 151 (364)
T PRK04013 80 NYEYVYMGNSGTEAVEAALKFARLY------TGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPFND-- 151 (364)
T ss_pred CCCEEEEeCchHHHHHHHHHHHHHH------hCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecCCC--
Confidence 4569999999999999999999987 45789999999999999999998887766666554444444444432
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcc
Q 013204 174 RYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRL 253 (447)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~ 253 (447)
.+.+++.+. +++++||+||+++++|.++++++|+++|+++|++||+++|+|||++|+ |+
T Consensus 152 ----------------~~~l~~~i~----~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-Rt 210 (364)
T PRK04013 152 ----------------VEAAKEAIT----KETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RT 210 (364)
T ss_pred ----------------HHHHHHHhc----CCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CC
Confidence 255666664 579999999999999999999999999999999999999999999999 99
Q ss_pred ccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcH
Q 013204 254 GTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNI 333 (447)
Q Consensus 254 g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~ 333 (447)
|..|+++++++.||++++||+++|| +|+|+++.++++. ...+++||++||++|++++++|++++++++
T Consensus 211 G~~~a~~~~gv~PDiv~~gK~lggG-~P~~a~~~~~~~~-----------~~~~~~T~~gnp~~~aaa~a~l~~i~~~~l 278 (364)
T PRK04013 211 GKFLAIEHYKVEPDIVTMGKGIGNG-VPVSLTLTNFDVE-----------RGKHGSTFGGNPLACKAVAVTLRILRRERL 278 (364)
T ss_pred CchhHHHhcCCCCCEEEecccccCC-ceeEEEEeccccc-----------CCCcCCCCCcCHHHHHHHHHHHHHHHhccH
Confidence 9999999999999999999999999 7999999987751 124778999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEEEe
Q 013204 334 VEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIMMS 412 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR~~ 412 (447)
.+++++. |+++. .+.+.+++|.|+|+++++..+ ...+.+.++++|+++.+.+ +.+||.
T Consensus 279 ~~~~~~~-------l~~l~-~~~v~~vRG~Gl~~gve~~~~-------------~~~i~~~~~~~Gll~~~~g~~vlr~~ 337 (364)
T PRK04013 279 VEKAGEK-------FIEIK-GERVVTTRGRGLMIGIVLKKP-------------VGKYVEELQNRGYLVHTAGQRVIRLL 337 (364)
T ss_pred HHHHHHH-------HHHhc-cCcceeeeeCcEEEEEEeCCc-------------HHHHHHHHHhCCcEEeeCCCCEEEEe
Confidence 8887764 23342 267889999999999999632 2357888999999998876 789999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 413 PPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 413 ~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
||+++|++++++++++|+++++++
T Consensus 338 Ppl~it~~~i~~~~~~l~~~l~~~ 361 (364)
T PRK04013 338 PPLIISKDTMEEAKSAIEGVINDI 361 (364)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999764
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-61 Score=474.16 Aligned_cols=381 Identities=29% Similarity=0.512 Sum_probs=324.7
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
++|+++++++|+|+||.|||+||||.+++|+++|||+||+|.+|+.++++++..... ...+++..++++++++..
T Consensus 20 ~~~~~~~~~~G~~~~d~dG~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~--~~~~~~~~~la~~l~~~~--- 94 (406)
T PRK12381 20 PAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQASKFWHTGN--GYTNEPVLRLAKKLIDAT--- 94 (406)
T ss_pred CCCceEEEeecCEEEeCCCCEEEEcCcCHhhccCCCCCHHHHHHHHHHHhhcccccC--ccCCHHHHHHHHHHHhhC---
Confidence 578999999999999999999999999999999999999999999999987533221 335778899999999985
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcc
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYW 173 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
+.++++|++||+|||+.|+|+++.++..++.+++.+|+.++++|||++.+++++++.+.+...+......+.+.++++
T Consensus 95 ~~~~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-- 172 (406)
T PRK12381 95 FADRVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYND-- 172 (406)
T ss_pred CCCeEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCC--
Confidence 456999999999999999999998865555456789999999999999999998887666554443333233333322
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcc
Q 013204 174 RYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRL 253 (447)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~ 253 (447)
++++++.+. +++++|++||+++++|.++|+.+|+++|+++|++||+++|+||||+|+|++
T Consensus 173 ----------------~~~l~~~l~----~~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~ 232 (406)
T PRK12381 173 ----------------LNSASALID----DQTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRT 232 (406)
T ss_pred ----------------HHHHHHhcc----CCeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCC
Confidence 367777664 478999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcH
Q 013204 254 GTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNI 333 (447)
Q Consensus 254 g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~ 333 (447)
|..++++.+++.||++++||++++| +|+|++++++++++.+. ...+.+|++++|++++++.++|+.++++++
T Consensus 233 G~~~~~~~~~v~pDi~t~sK~l~gG-~~ig~~~~~~~~~~~~~-------~~~~~~t~~~~pl~~aaa~a~l~~l~~~~~ 304 (406)
T PRK12381 233 GELYAYMHYGVTPDVLTTAKALGGG-FPIGAMLTTEKCASVMT-------VGTHGTTYGGNPLASAVAGKVLELINTPEM 304 (406)
T ss_pred cchhhhHhhCCCCCEEEehhhhhCC-CceEEEEEcHHHHhhcC-------CCCCCCCCCCCHHHHHHHHHHHHHHhhccH
Confidence 9888888889999999999999988 89999999999998875 234667899999999999999999888889
Q ss_pred HHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEEE
Q 013204 334 VEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIMM 411 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR~ 411 (447)
.++++++++++++.|+++ .+++.+..+++.|.++++++..+.. .....+.+.|+++||++.+.+ +.+||
T Consensus 305 ~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~Gl~~~~~l~~~~~---------~~~~~~~~~l~~~Gv~v~~~g~~~lRl 375 (406)
T PRK12381 305 LNGVKQRHDWFVERLNTINARYGLFSEIRGLGLLIGCVLNAEYA---------GKAKQISQEAAKAGVMVLIAGPNVVRF 375 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCEEEEecCeEEEEEEecCchh---------hHHHHHHHHHHHCCcEEeeCCCCEEEE
Confidence 999999999999999988 5577778899999999998865210 024568889999999998766 68999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 412 SPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 412 ~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
+||+++|+++|++++++|+++++++.+
T Consensus 376 ~p~~~~t~~~i~~~~~~l~~~l~~~~~ 402 (406)
T PRK12381 376 APALNISEEEITTGLDRFARACERFVS 402 (406)
T ss_pred eCCccCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999987654
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-61 Score=464.08 Aligned_cols=371 Identities=30% Similarity=0.542 Sum_probs=318.0
Q ss_pred EEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeE
Q 013204 19 IEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKV 98 (447)
Q Consensus 19 ~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v 98 (447)
+++++|+++||.|||+||||.+++++.+|||+||+|.+|+.++++++...+. ...+++..++++++++.. +.++|
T Consensus 1 ~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~--~~~~~~~~~la~~l~~~~---~~~~v 75 (382)
T PLN00144 1 FVSGKGCKLYDVEGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAHVSN--VYHTIPQVELAKRLVASS---FADRV 75 (382)
T ss_pred CeeeeccEEEeCCCCEEEECCcCHHhccCCCCCHHHHHHHHHHHHhcCCccc--cccCHHHHHHHHHHHhcC---CCCeE
Confidence 4689999999999999999999999999999999999999999988654322 235788899999999875 35699
Q ss_pred EEeCChhhHHHHHHHHHHHHHHhcCCCC-------cceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC
Q 013204 99 FFTNSGSEANDTQVKLVWYYNNALGRPN-------KKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH 171 (447)
Q Consensus 99 ~~~~sGseA~~~Al~~~~~~~~~~~~~~-------~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
+|++||+||++.|||+++.++..++... +.+||.|+++|||++.++++.++.+.++..+....+.+.++++++
T Consensus 76 ~f~~sGseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d 155 (382)
T PLN00144 76 FFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYGN 155 (382)
T ss_pred EEeCCcHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCCC
Confidence 9999999999999999998875544322 578999999999999999998887665555443333344444432
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCC
Q 013204 172 YWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG 251 (447)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g 251 (447)
++.+++.+. ++++++|++||++++||.+.++++|+++|+++|++||+++|.|||++|||
T Consensus 156 ------------------~~~l~~~~~---~~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~g 214 (382)
T PLN00144 156 ------------------LEAARKLIQ---KGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLG 214 (382)
T ss_pred ------------------HHHHHHhcC---CCCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCC
Confidence 367777664 35799999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh
Q 013204 252 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER 331 (447)
Q Consensus 252 ~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~ 331 (447)
|+|..++++++++.||+++|||++++| +|+|++++++++++.+. ...+.+|+.++|++++++.++|++++++
T Consensus 215 r~g~~~~~~~~~~~PDi~t~sK~l~~G-~pig~v~~~~~~~~~~~-------~~~~~~T~~~~pl~~aaa~a~l~~i~~~ 286 (382)
T PLN00144 215 RTGYLWAHEAYGVEPDIMTLAKPLAGG-LPIGAVLVTEKVASAIN-------PGDHGSTFAGGPLVCNAALAVLDKISKP 286 (382)
T ss_pred ccchHhhhhhcCCCCCEEEecccccCC-cceEEEEEcHHHHhccC-------CCCCCCCCCCCHHHHHHHHHHHHHHhhc
Confidence 999988888899999999999999998 79999999999998875 2346789999999999999999999988
Q ss_pred cHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC--CE
Q 013204 332 NIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--DN 408 (447)
Q Consensus 332 ~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g--~~ 408 (447)
++.++++++++++++.|+++ .+++.+..+++.|+++++++... ...+.+.++++||++.+.+ +.
T Consensus 287 ~~~~~~~~~g~~l~~~l~~~~~~~~~~~~vrg~G~~~~l~l~~~-------------~~~~~~~~~~~Gv~i~~~~~~~~ 353 (382)
T PLN00144 287 GFLASVAKKGEYLRELLRRKLGGNPHVKEVRGVGLLVGIQLDVP-------------AGPLVDACRDSGLLVLTAGKGDV 353 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCceeeecCceEEEEEecCc-------------cHHHHHHHHHCCeEEeecCCCCE
Confidence 99999999999999999886 66777889999999999998311 2357889999999998864 78
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 409 IMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 409 iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
||++||+++++++|++++++|++++.++
T Consensus 354 lrl~p~~~~~~~~i~~~~~~l~~~l~~~ 381 (382)
T PLN00144 354 VRLVPPLVISEAELEQAVEILADCLPAL 381 (382)
T ss_pred EEEeCCCccCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998754
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-60 Score=466.84 Aligned_cols=383 Identities=26% Similarity=0.373 Sum_probs=312.1
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
++|+++++++|+|+||.|||+||||.++++++++||+||+|.+|+.++++++... ..+++...++++++++..+
T Consensus 34 ~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~----~~~~~~~~~la~~l~~~~p-- 107 (428)
T PRK12389 34 GAPVVMERGKGAYFYDVDGNKYIDYLAAYGPIITGHAHPHITKAITEAAENGVLY----GTPTELEIEFAKMLKEAIP-- 107 (428)
T ss_pred CCCeEEEeccCCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCcc----CCCCHHHHHHHHHHHHhCC--
Confidence 5789999999999999999999999999999999999999999999999875432 3478889999999999864
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCC----CCCC---CCccee
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQK----FDLP---APFVLH 166 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~----~~~~---~~~~~~ 166 (447)
+.++++|++||+||++.|||++|.+ +++.+||.|+++|||++.++++.++....... .+.+ .+....
T Consensus 108 ~~~~v~f~~sGseA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (428)
T PRK12389 108 SLEKVRFVNSGTEAVMTTIRVARAY------TGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVIT 181 (428)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHHh------hCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEE
Confidence 4679999999999999999999988 56789999999999999999988764322110 0110 011112
Q ss_pred cCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehh
Q 013204 167 TDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEV 246 (447)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv 246 (447)
++++ +++.+++.+... ++++++||+||+++++|+++|+++||++|+++|++||+++|+|||
T Consensus 182 ~~~~------------------d~~~l~~~l~~~-~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV 242 (428)
T PRK12389 182 VPFN------------------DIEALKEALDKW-GDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEV 242 (428)
T ss_pred cCCC------------------CHHHHHHHHHhc-CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcc
Confidence 2211 247777777643 367999999999999999999999999999999999999999999
Q ss_pred hcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHH
Q 013204 247 ICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALK 326 (447)
Q Consensus 247 ~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~ 326 (447)
++|| |+|..++++++|+.||++|+||+++|| +|+|++++++++++.+... +...+++||++||++|++++++|+
T Consensus 243 ~tG~-Rt~~~~a~~~~gv~PDivt~gK~lggG-~Pi~av~~~~~i~~~~~~~----~~~~~~~T~~gnpl~~Aaala~L~ 316 (428)
T PRK12389 243 ITAF-RFMYGGAQDLLGVEPDLTALGKIIGGG-LPIGAYGGRKDIMEQVAPL----GPAYQAGTMAGNPASMAAGIACLE 316 (428)
T ss_pred cccc-ccCcchhhHHhCCCCCeeeechhhcCC-CceeEEeEHHHHHhhhccC----CCcccccCCccCHHHHHHHHHHHH
Confidence 9999 998778888999999999999999999 7999999999999988521 234577899999999999999999
Q ss_pred HHhhhcHHHHHHHHHHHHHHhHhhc-cCCCceeeE-eeeeeEEEEEeecCCCCCCCC--CCCcchHHHHHHHHHHcCceE
Q 013204 327 IYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEI-RGTGLILGTEFADNKSPNEPF--PPEWGIGAYFGAQCEKHGMLV 402 (447)
Q Consensus 327 ~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~Gi~~ 402 (447)
+++++++.+++++++++|++.|+++ .+++.+..+ ++.| ++++++..+....... ..+......+.+.|+++|+++
T Consensus 317 ~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~r~~g-~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~ 395 (428)
T PRK12389 317 VLQQEGVYEKLDRLGAMLEEGILEAAEKHGITITINRLKG-ALTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGINL 395 (428)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCc-EEEEEEeCCCCCChhhhcccCHHHHHHHHHHHHHCCcEe
Confidence 9998899999999999999999988 567776666 6666 7788886532110000 001123456888999999999
Q ss_pred EeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 403 RVSGDNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 403 ~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
.+.+.. .+.||+.+|++||++++++|++++++
T Consensus 396 ~~~~~~-~~~~~l~~t~e~id~~~~~l~~~l~~ 427 (428)
T PRK12389 396 APSKYE-AWFLTTAHTEEDIEETLEAVDRAFAQ 427 (428)
T ss_pred ecCCCC-CeeecCCCCHHHHHHHHHHHHHHHHh
Confidence 876421 24578999999999999999999865
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-60 Score=467.75 Aligned_cols=391 Identities=28% Similarity=0.467 Sum_probs=328.3
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
++|+++++++|+++||.||++||||++++++.++||+||+|++|+.++++++...+. ...++...++++++++++
T Consensus 56 ~~p~~~~~a~G~~l~d~dG~~ylD~~sg~~~~~~Gh~~p~v~~ai~~ql~~~~~~~~--~~~~~~~~~la~~L~~~~--- 130 (474)
T PLN02624 56 PIPVVFSRAKGSRIWDPEGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLTLSSR--AFYNDKFPEFAEYLTSMF--- 130 (474)
T ss_pred CCCceEEeeeeCEEEECCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhcCCccc--ccCCHHHHHHHHHHHhhc---
Confidence 458999999999999999999999999999999999999999999999998655433 246788999999999986
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHh-cCCC-CcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNA-LGRP-NKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH 171 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~-~~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
+.++++|++||+|||+.|||+++.++.. +|.+ ++..|+.+.++|||++.++++.++.+.+...+....+.+.++++.+
T Consensus 131 ~~~~~~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d 210 (474)
T PLN02624 131 GYDMVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDFGD 210 (474)
T ss_pred CCCeEEEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCCCC
Confidence 4679999999999999999999987433 2322 4568999999999999999998887665555544433334444321
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCC
Q 013204 172 YWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG 251 (447)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g 251 (447)
++.+++.+.. .++.+++||+||+++++|.++|+++||++|+++|++||+++|+||||+|||
T Consensus 211 ------------------~~~l~~~l~~-~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~G 271 (474)
T PLN02624 211 ------------------LDALEKIFEE-DGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLA 271 (474)
T ss_pred ------------------HHHHHHHHHh-CCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcC
Confidence 3777887764 346799999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh
Q 013204 252 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER 331 (447)
Q Consensus 252 ~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~ 331 (447)
++|..++++++++.||++++||++++|++|+|+++.++++++.+. ...+++|++++|++++++.++|+.++++
T Consensus 272 rtG~~~a~~~~~i~pDiv~lsK~lggG~~pigav~~~~~i~~~~~-------~~~~~~T~~g~pl~~aaa~aaLe~l~~~ 344 (474)
T PLN02624 272 RTGKMLACDWEEVRPDVVILGKALGGGVIPVSAVLADKDVMLCIK-------PGEHGSTFGGNPLASAVAMAALQVVQDE 344 (474)
T ss_pred cCcchhhHHhcCCCCCEEEecccccCCCCcceeeeecHHHHhHhc-------cCCcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 999988888889999999999999999899999999999888775 2356779999999999999999998888
Q ss_pred cHHHHHHHHHHHHHHhHhhc-cCCC-ceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CE
Q 013204 332 NIVEQVNKIAPKFQDGVKAF-SDSP-IIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DN 408 (447)
Q Consensus 332 ~~~~~~~~~~~~l~~~L~~l-~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~ 408 (447)
++.+++.++++++++.|+++ .+++ .+.++++.|.+..+.+..+... ......+.+.|+++||++.+.+ +.
T Consensus 345 ~l~~~~~~~~~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~l~~~~~~-------~~~a~~~~~~L~e~GV~v~p~~~~~ 417 (474)
T PLN02624 345 KLAERSAKLGQELRDQLQKIQKQFPKLIKEVRGRGLLNAVVLNSPKLG-------PVSAYDVCLKLKERGLLAKPTHDTI 417 (474)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeEEEEEEEecCCCcC-------hHHHHHHHHHHHhCCeEEecCCCCE
Confidence 88899999999999999988 4555 5677899999999888543210 0124568888999999999875 56
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 013204 409 IMMSPPFIMSPEEVDELISKYGKALKATEERVKE 442 (447)
Q Consensus 409 iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~~~ 442 (447)
+||+||+.+|+++|++++++|++++++-..++..
T Consensus 418 lR~~p~l~~t~e~id~~l~~L~~~l~~~~~~~~~ 451 (474)
T PLN02624 418 IRLAPPLSISEDELQECSKALSDVLEHDLPKLQS 451 (474)
T ss_pred EEEECCccCCHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999999999998776555533
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-60 Score=467.16 Aligned_cols=399 Identities=23% Similarity=0.347 Sum_probs=313.4
Q ss_pred CCCCCeE--EEEecCcEEEeC-CCCEEEecCCccccccCCCCCHHHH--HHHHHHHhcCCcc-cccCcCCChHHHHHHHH
Q 013204 12 TDVHPLV--IEKSEGSYVYDV-NGKKYLDSLAGLWCTALGGSEPRLV--AAATAQLNTLPFY-HSFWNRTTKPSLDLAKE 85 (447)
Q Consensus 12 ~~~~~~~--~~~~~g~~~~d~-dg~~~lD~~~~~~~~~lG~~~p~v~--~a~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ 85 (447)
...+|++ +++++|+++||. |||+||||.+++++.+|||+||+|. +|+.+++.++... .......+++..+++++
T Consensus 14 ~~~~p~~~~~~~a~G~~l~D~~dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~q~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (431)
T TIGR03251 14 TDGFDLVLDLDRSRGSVLVDARDGRRYLDMFSFFASMALGMNHPALVDDLAFRARLGAAAVNKPSNSDVYTVAMARFVDT 93 (431)
T ss_pred ccCCceeeEEEeccCCEEEECCCCCChhhcccChhhcCCCCCChhhhHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHH
Confidence 4566766 599999999996 9999999999999999999999999 9999999875321 12223467788899999
Q ss_pred HHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHH----hcCCCC--cceEEEEcCCCccchhhhhcccCCccccCCCCC
Q 013204 86 LLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN----ALGRPN--KKKFIARQKSYHGSTLIAASLSGLPALHQKFDL 159 (447)
Q Consensus 86 l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~----~~~~~~--~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 159 (447)
+.+...+.+.++++|++||+||||.|||++++|+. .+|+++ +++||.|+++|||++.++++.++...+...+..
T Consensus 94 l~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~ 173 (431)
T TIGR03251 94 FARVLGDPALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFP 173 (431)
T ss_pred HHHhcCCCCcCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCC
Confidence 98875334678999999999999999999998852 234332 578999999999999999998886544433221
Q ss_pred CCCcceecCCCCcccCCCCC---CChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHh
Q 013204 160 PAPFVLHTDCPHYWRYAHPG---ETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKK 236 (447)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~ 236 (447)
.. ...+++.|.. +.+.+. ...+.+..++++++++.+.. .++++++||+||+++++|+++|+++||++|+++|++
T Consensus 174 ~~-~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~ 250 (431)
T TIGR03251 174 KF-DWPRIDNPKL-TFPLDAPNLDQVIALEEEALRQARAAFAE-RPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDE 250 (431)
T ss_pred CC-CCccCCCCcc-cCCccccccchhhHHHHHHHHHHHHHHHh-CCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHH
Confidence 11 1112222221 111111 11234445667788887764 457899999999999999999999999999999999
Q ss_pred cCCEEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHH
Q 013204 237 YDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPV 316 (447)
Q Consensus 237 ~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 316 (447)
||++||+||||+||||+|..|+++++++.||++++||++ |+++++.++++.+....... ....+.+||++||+
T Consensus 251 ~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~~~gK~~-----~~~g~~~~~~i~~~~~~~~~--~~~~~~~T~~gnpl 323 (431)
T TIGR03251 251 HDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVAFGKKT-----QVCGIMAGRRVDEVADNVFA--VPSRLNSTWGGNLV 323 (431)
T ss_pred cCCEEEEecchhccCccchHHHHHhcCCCCCEEEecccC-----ccceEEecchHHHhhhhccc--CccccCCCCCCCHH
Confidence 999999999999999999999999999999999999997 33445555544332210000 01236689999999
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc-cCCC-ceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHH
Q 013204 317 SCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSP-IIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQ 394 (447)
Q Consensus 317 ~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (447)
++++++++|++++++++.++++++++++++.|+++ .+++ ++.++++.|+++++++.... ....+.+.
T Consensus 324 ~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~~~~~~-----------~~~~~~~~ 392 (431)
T TIGR03251 324 DMVRATRILEIIEEERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFDLPSTA-----------DRDEVIRQ 392 (431)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCccceecccccceeEEEEeCCHH-----------HHHHHHHH
Confidence 99999999999988889999999999999999988 5677 88899999999999985321 24568889
Q ss_pred HHHcCceEEeeC-CEEEEecCCCCCHHHHHHHHHHHHH
Q 013204 395 CEKHGMLVRVSG-DNIMMSPPFIMSPEEVDELISKYGK 431 (447)
Q Consensus 395 l~~~Gi~~~~~g-~~iR~~~~~~~t~e~i~~~~~~l~~ 431 (447)
|+++||++.+.+ +.+||+||+.+|++||++++++|++
T Consensus 393 l~~~Gvl~~~~g~~~lr~~P~l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 393 LYREGVLLLGCGERSIRFRPPLTVTREEIDAAIDAIRR 430 (431)
T ss_pred HHhCCeEEecCCCCeEEEECCccCCHHHHHHHHHHHHh
Confidence 999999998876 6799999999999999999999976
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-60 Score=464.97 Aligned_cols=386 Identities=17% Similarity=0.227 Sum_probs=310.7
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
.++|+++++++|+++||.|||+||||.+++++.+|||+||+|.+|+.++++++.. +..+++...++++++++.+
T Consensus 55 ~~~p~~~~~a~G~~v~D~DG~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~~~~----~~~~~~~~~~lAe~l~~~~-- 128 (453)
T PRK07046 55 TPFPLFVAEARGARFTDVDGHRYDDFCLGDTGAMFGHSPAPVARALAEQARRGLT----TMLPSEDAAWVGEELARRF-- 128 (453)
T ss_pred CCCCCeEEeeeeCEEEeCCCCEEEEecccccccccCCCCHHHHHHHHHHHHhCCC----CCCCCHHHHHHHHHHHHHh--
Confidence 3689999999999999999999999999999999999999999999999987532 2447889999999999986
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcc--cCCccccCCC-CCCC---Cccee
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASL--SGLPALHQKF-DLPA---PFVLH 166 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~--~~~~~~~~~~-~~~~---~~~~~ 166 (447)
+.++++|++|||||++.|||++|.+ +++++||.|+++|||++...+.. ++.+..+..+ +.+. .....
T Consensus 129 -~~~~v~F~nSGtEA~e~AlrlAR~~------TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~ 201 (453)
T PRK07046 129 -GLPYWQVATTATDANRFVLRWARAV------TGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRV 201 (453)
T ss_pred -CCCEEEEECCHHHHHHHHHHHHHHh------hCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEe
Confidence 4679999999999999999999988 56899999999999996554432 2222111111 1100 00111
Q ss_pred cCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehh
Q 013204 167 TDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEV 246 (447)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv 246 (447)
+++ ++++.+++.+. ++++++||+||+++++|+++|+++||++|+++|++||++||+|||
T Consensus 202 ~~~------------------nd~~~l~~~l~---~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV 260 (453)
T PRK07046 202 VEF------------------NDLAALEAALA---DGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDET 260 (453)
T ss_pred eCC------------------CCHHHHHHHhC---CCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcc
Confidence 111 12477777773 367999999999999999999999999999999999999999999
Q ss_pred hcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccC--CCCccCcCCCCCCcHHHHHHHHHH
Q 013204 247 ICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN--TLGSFSHGFTYSGHPVSCAVAIEA 324 (447)
Q Consensus 247 ~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~t~~~~~~~~~aa~a~ 324 (447)
++ | |.|.....+++|+.||++|+||+++|| +|+|++++++++++.+..... ..+.+.+++||++||++|++++++
T Consensus 261 ~t-f-r~g~Gg~~~~~gv~PDi~t~gK~lggG-~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~ 337 (453)
T PRK07046 261 HT-I-SSGPGGYTRAHGLEPDFLVVGKPIAGG-VPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRAT 337 (453)
T ss_pred cc-C-ccCCcchhHHhCCCccceeehhhhcCC-CcceeeeehHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHH
Confidence 99 5 466555667789999999999999999 799999999999998863211 122345778999999999999999
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCC---CCCCcchHHHHHHHHHHcCc
Q 013204 325 LKIYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEP---FPPEWGIGAYFGAQCEKHGM 400 (447)
Q Consensus 325 l~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~Gi 400 (447)
|++++++++.+++++++++|++.|+++ .+++++..+++.|+++.+.+..+...... .+.+......+...|+++||
T Consensus 338 L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv 417 (453)
T PRK07046 338 LAEVMTEAAYAHMLALAARLAAGLRAVIARHGLPWHVTRVGARVEFQFAPTPPRNGAEAAAALDPELEAALHLYLLNRGV 417 (453)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCcEEEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHHCCC
Confidence 999988889999999999999999987 67788889999999998887543211100 00012234567788999999
Q ss_pred eEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 401 LVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 401 ~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
++.+.++.++++|+ +|++||++++++++++++++.
T Consensus 418 ~~~~~~~~~~~~p~--~t~~did~~~~~~~~~l~~~~ 452 (453)
T PRK07046 418 LITPFHNMMLVCPA--TTAADVDRLVAAFDACLGELL 452 (453)
T ss_pred EEecccCcEEEeCC--CCHHHHHHHHHHHHHHHHHHh
Confidence 99887677899975 999999999999999998753
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-59 Score=501.95 Aligned_cols=396 Identities=26% Similarity=0.499 Sum_probs=322.7
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
..|+++++++|+++||.|||+||||.+++ ..+||+||+|.+|+.++++++...+ ...++...++++++++.++ .
T Consensus 566 ~~p~~i~~g~G~~l~D~dG~~ylD~~~~~--~~lGh~hp~v~~Ai~~q~~~l~~~~---~~~~~~~~elae~L~~~~p-~ 639 (972)
T PRK06149 566 ADPPQIERGWRHHLFDMAGRSYLDMVNNV--TVLGHGHPRLAAAAARQWSLLNTNS---RFHYAAVAEFSERLAALAP-D 639 (972)
T ss_pred cCCCeEEEeeeeEEEeCCCCEEEECCCCc--cccCCCCHHHHHHHHHHHHhccccc---cccCHHHHHHHHHHHHhCC-C
Confidence 35789999999999999999999999875 5799999999999999998764432 2356788999999999973 4
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCC-CCCCCcceecCCCCc
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKF-DLPAPFVLHTDCPHY 172 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 172 (447)
+.++++|++||+|||+.|||+++.+ +++++||.++++|||++.++.++++........ ......+..++.|+.
T Consensus 640 ~~~~v~f~~SGsEA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~ 713 (972)
T PRK06149 640 GLDTVFLVNSGSEANDLAIRLAWAA------SGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNT 713 (972)
T ss_pred CcCEEEEeCCchHHHHHHHHHHHHh------cCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcc
Confidence 5679999999999999999999988 567899999999999999887776532111111 111123344555555
Q ss_pred ccCCCCCCC-hhHHHHHHHHHHHHHHHh--hCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcC
Q 013204 173 WRYAHPGET-EEEYSTRLANNLEDLILK--EGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA 249 (447)
Q Consensus 173 ~~~~~~~~~-~~~~~~~~~~~le~~l~~--~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g 249 (447)
++.++...+ ...+ .+++++.+.. ..++++++||+||+++++|.++++++||++|+++|++||+++|+||||||
T Consensus 714 ~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tG 789 (972)
T PRK06149 714 YRGRFRGADSAADY----VRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVG 789 (972)
T ss_pred cCCcCCCcccHHHH----HHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhc
Confidence 543333221 1122 2444444432 23468999999999999999999999999999999999999999999999
Q ss_pred CCcccc-ccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHH
Q 013204 250 FGRLGT-MFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIY 328 (447)
Q Consensus 250 ~g~~g~-~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~ 328 (447)
|||+|. .|+++++|+.||++|+||+++|| +|+|++++++++++.+... . .+.+|+++||++|++++++|+++
T Consensus 790 fGRtG~~~~a~e~~gv~PDivt~gK~lg~G-~Pl~av~~~~~i~~~~~~~-----~-~~~sT~~gnP~~~aaala~L~~i 862 (972)
T PRK06149 790 YGRLGHYFWGFEQQGVVPDIITMAKGMGNG-HPLGAVITRREIAEALEAE-----G-YFFSSTGGSPVSCRIGMAVLDVL 862 (972)
T ss_pred CCccCccchhhhhcCCCCCEEEecccccCC-eeeEEEEEcHHHHhhhccC-----C-cccCCCCCCHHHHHHHHHHHHHH
Confidence 999997 56899999999999999999999 7999999999999988531 1 23468899999999999999999
Q ss_pred hhhcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-
Q 013204 329 KERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG- 406 (447)
Q Consensus 329 ~~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g- 406 (447)
+++++.+++++++++|++.|+++ .+++++..++|.|+|+++++..+..+..+ .......+.+.|+++||++.+.|
T Consensus 863 ~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Gl~~gvel~~~~~~~~~---~~~~~~~i~~~l~~~Gvl~~~~g~ 939 (972)
T PRK06149 863 REEKLQENARRVGDHLKARLEALADRHPLIGAVHGMGLYLGVELVRDRQTLEP---ATEETAAICDRLLELGVIMQPTGD 939 (972)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeecceEEEEEEecCcccCCC---ChHHHHHHHHHHHhCCeEEeecCC
Confidence 99999999999999999999998 66899999999999999999754322211 11235668899999999999876
Q ss_pred --CEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 407 --DNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 407 --~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+.+||.||+++|+++|++++++|++++.+
T Consensus 940 ~~~vl~~~Ppl~it~~~id~~~~~l~~~l~~ 970 (972)
T PRK06149 940 HLNILKIKPPLCLDRESADFFVDMLDRVLTE 970 (972)
T ss_pred CCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 67999999999999999999999999875
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-60 Score=464.01 Aligned_cols=390 Identities=23% Similarity=0.316 Sum_probs=304.6
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
.++|+++++++|+++||.|||+||||.+++++++|||+||+|.+++.++++++... ..+++...++++++++.++
T Consensus 79 ~~~p~~~~~a~G~~l~D~dG~~yiD~~~g~g~~~lGh~~p~v~~av~~ql~~~~~~----~~~~~~~~~lAe~l~~~~p- 153 (474)
T PLN02482 79 GGQPIVFDRVKGSYAWDVDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSF----GAPCLLENVLAEMVIDAVP- 153 (474)
T ss_pred CCCCeeEEEeeeCEEEECCCCEEEEecccccccccCCCCHHHHHHHHHHHhhCCCC----CCCCHHHHHHHHHHHHhCC-
Confidence 35789999999999999999999999999999999999999999999999885422 4478889999999999974
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchh--hhhcccCCccccCCCCCCCCcceecCCC
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTL--IAASLSGLPALHQKFDLPAPFVLHTDCP 170 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (447)
+.++++|++||+||++.|||++|.+ +++++||.|+++|||++. .....++........ .+.......+
T Consensus 154 -~~~~v~f~~SGsEA~e~AlklAR~~------tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~ 223 (474)
T PLN02482 154 -SVEMVRFVNSGTEACMGVLRLARAY------TGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPD---SPGVPKAATS 223 (474)
T ss_pred -CCCEEEEeCChHHHHHHHHHHHHHh------cCCCEEEEECCccCCCcchhhhhcCCCccccCCCC---CCCCCCCCCC
Confidence 3689999999999999999999988 677899999999999763 333333221111000 0000000000
Q ss_pred CcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCC
Q 013204 171 HYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250 (447)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~ 250 (447)
+... +.+++++++++++.. .++++++||+||+++++|.++|+++||++|+++|++||++||+|||++||
T Consensus 224 ~~~~----------~~~nd~~~l~~~l~~-~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf 292 (474)
T PLN02482 224 ATLT----------APYNDLEAVKKLFEA-NKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF 292 (474)
T ss_pred CeEE----------ecCCChHHHHHHHHh-CCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe
Confidence 0000 111234778887764 34689999999999999999999999999999999999999999999999
Q ss_pred CccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh
Q 013204 251 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE 330 (447)
Q Consensus 251 g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~ 330 (447)
|+|..++.+++|+.||++|+||+++|| +|+|++++++++++.+.. .+.+.+++||++||++|++++++|+++++
T Consensus 293 -R~g~~ga~~~~gv~PDi~t~gK~lggG-~Pigav~g~~ei~~~~~~----~~~~~~~~T~~gnpl~~aAala~L~~l~~ 366 (474)
T PLN02482 293 -RIAYGGAQEYFGITPDLTTLGKVIGGG-LPVGAYGGRREIMEMVAP----AGPMYQAGTLSGNPLAMTAGIHTLKRLQQ 366 (474)
T ss_pred -ecCcchHhHHhCCCCCEEEecchhhCC-CceEEEEEcHHHHHhhcc----CCCcccccCcchhHHHHHHHHHHHHHHhc
Confidence 999888889999999999999999998 799999999999998852 12456778999999999999999999988
Q ss_pred hcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCC--CCCCCCcchHHHHHHHHHHcCceEEeeCC
Q 013204 331 RNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPN--EPFPPEWGIGAYFGAQCEKHGMLVRVSGD 407 (447)
Q Consensus 331 ~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~Gi~~~~~g~ 407 (447)
+++.+++++++++|++.|+++ .+++....+.+.+.++++.|..+.... .....+......+.+.|+++||++.+.+.
T Consensus 367 ~~~~~~~~~~g~~l~~~L~~l~~~~g~~~~~~~v~g~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~Gv~~~~~~~ 446 (474)
T PLN02482 367 PGTYEYLDKITKKLIQGILEAGKKAGHEMCGGYISGMFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLEEGVYLAPSQF 446 (474)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcccceEEEEEEecCCccChhhhccCCHHHHHHHHHHHHHCCeEEeccCC
Confidence 899999999999999999988 444322222233347778776532110 00001112345688889999999987543
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 408 NIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 408 ~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
..+ .||+.+|++|||++++++++++.+
T Consensus 447 ~~~-~psl~ht~~dId~~l~al~~~l~~ 473 (474)
T PLN02482 447 EAG-FTSLAHTEEDIDFTIAAAERVLAR 473 (474)
T ss_pred CCC-cCCCCCCHHHHHHHHHHHHHHHHh
Confidence 222 488999999999999999999865
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-59 Score=455.41 Aligned_cols=386 Identities=21% Similarity=0.315 Sum_probs=308.6
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
.++|+++++++|++|||.|||+||||.+++++.+|||+||+|.+|+.++++++.. +..+++...++++++++.++
T Consensus 33 ~~~p~~i~~a~G~~l~D~dG~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~----~~~~~~~~~~la~~L~~~~~- 107 (433)
T PRK00615 33 GITPPIVSSASGDIFIDSLGKTFIDFCGSWGSLIHGHSHPKICDAIQQGAERGTS----YGLTSEQEILFAEELFSYLG- 107 (433)
T ss_pred CCCCceEEEeeeCEEEECCCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCCC----CCCCCHHHHHHHHHHHHhCC-
Confidence 3689999999999999999999999999999999999999999999999987532 13468889999999999873
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccch---hhhhcccCCcccc--CCCCCCCCcceec
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGST---LIAASLSGLPALH--QKFDLPAPFVLHT 167 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~ 167 (447)
...++++|++||+||++.|||++|.+ +++.+||.|.++|||++ .++++.++..... ..+.....
T Consensus 108 ~~~~~v~f~~SGsEA~e~AiklAr~~------tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~----- 176 (433)
T PRK00615 108 LEDHKIRFVSSGTEATMTAVRLARGI------TGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLA----- 176 (433)
T ss_pred CCcCEEEEeCchHHHHHHHHHHHHHh------hCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCC-----
Confidence 33479999999999999999999987 56789999999999987 5666555422110 00100000
Q ss_pred CCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhh
Q 013204 168 DCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVI 247 (447)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~ 247 (447)
.......+ +++++++++.+.... +++++||+||+++++|.++|+++||++|+++|++||+++|+||||
T Consensus 177 ---~~~~~~~~--------~~d~~~l~~~l~~~~-~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~ 244 (433)
T PRK00615 177 ---HPLTLSLP--------YNDFQIFQTVMNSLG-HRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVV 244 (433)
T ss_pred ---CCCeEeCC--------CCCHHHHHHHHHhcC-CceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccc
Confidence 00000011 122477888876543 679999999999999999999999999999999999999999999
Q ss_pred cCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHH
Q 013204 248 CAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKI 327 (447)
Q Consensus 248 ~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~ 327 (447)
+|| |+|..++++++++.||++++||+++|| +|+|++++++++++.+... +.+.+++|++++|++|++++++|++
T Consensus 245 tG~-R~G~~ga~~~~gv~PDi~~~gK~lggG-~p~~av~~~~~i~~~~~~~----~~~~~~~T~~g~p~~~aa~la~L~~ 318 (433)
T PRK00615 245 TGF-RVAQGGAAAIYHVKPDITVYGKILGGG-LPAAAVVAHKSIMDHLAPE----GTIFQAGTLSGNPLAMAAGKASINL 318 (433)
T ss_pred ccc-cccHhHHHHhcCCCCCeEEEcccccCC-cceeeeeecHHHHhhhcCC----CCcccCCCCcccHHHHHHHHHHHHH
Confidence 999 899888899999999999999999998 7999999999999988521 2345678999999999999999999
Q ss_pred HhhhcHHHHHHHHHHHHHHhHhhc-cC--CCceeeEeeeeeEEEEEeecCCCCC--CCCCCCcchHHHHHHHHHHcCceE
Q 013204 328 YKERNIVEQVNKIAPKFQDGVKAF-SD--SPIIGEIRGTGLILGTEFADNKSPN--EPFPPEWGIGAYFGAQCEKHGMLV 402 (447)
Q Consensus 328 ~~~~~~~~~~~~~~~~l~~~L~~l-~~--~~~~~~~~~~g~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~Gi~~ 402 (447)
++++++.++++++++++++.|+++ .+ ++ +..++ .|++++++|.+...+. ............+.+.|+++||++
T Consensus 319 i~~~~~~~~~~~~g~~l~~~l~~~~~~~g~~-v~~~r-~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~ 396 (433)
T PRK00615 319 CREQGFYTQLSTLEQNFLSPIEEMIRSQGFP-VSLVR-YGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSKGVYL 396 (433)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEe-eceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHCCeee
Confidence 988889999999999999999886 44 34 55666 8999999997543211 111112234557889999999998
Q ss_pred EeeC-CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 403 RVSG-DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 403 ~~~g-~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.+.. ...-++ ..||++|||+++++++++++++
T Consensus 397 ~~~~~~~~~ls--~~ht~~did~~~~a~~~~~~~~ 429 (433)
T PRK00615 397 SPSPFEASFLS--SAHSMENLDYAQNVLIDSLEKV 429 (433)
T ss_pred cCcccccccee--cCCCHHHHHHHHHHHHHHHHHH
Confidence 8653 122344 7899999999999999999875
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-61 Score=456.57 Aligned_cols=337 Identities=38% Similarity=0.693 Sum_probs=291.4
Q ss_pred EEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCe
Q 013204 18 VIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAK 97 (447)
Q Consensus 18 ~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 97 (447)
+|++++|++++|.|||+|+||.+++++.+|||+||+|.+++.+++.+....+ .....++...++++++.+.++. +.++
T Consensus 1 ~i~~a~G~~l~d~dG~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~~~~~-~~~~~~~~~~~la~~L~~~~p~-~~~~ 78 (339)
T PF00202_consen 1 FIERAEGAYLWDVDGREYLDFMSGYGSVNLGHNHPEIAEAIAEQANKLNYVS-FSGFTHPEAAELAEKLAELFPG-GLDR 78 (339)
T ss_dssp EEEEEEBTEEEETTSEEEEESSHHHHTTTT-BT-HHHHHHHHHHHHHCSSCS-TTTSEEHHHHHHHHHHHHHSST-TEEE
T ss_pred CeEEeecCEEEECCCCEEEECCCCccceecCCCccccchhHHHHhhhccccc-ccceeccchhhhhhhhhhcccc-ccce
Confidence 5899999999999999999999999999999999999999999998865543 2345788999999999999843 7889
Q ss_pred EEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCC
Q 013204 98 VFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAH 177 (447)
Q Consensus 98 v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (447)
++|++||+|||+.|||++++++..++.+++.+|+.|+++|||++.++++.++.+.++..+........++|+|+...
T Consensus 79 v~f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~--- 155 (339)
T PF00202_consen 79 VFFANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAA--- 155 (339)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHH---
T ss_pred eeeccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccch---
Confidence 99999999999999999997776666678899999999999999999999888877777766666666777765321
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc
Q 013204 178 PGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF 257 (447)
Q Consensus 178 ~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~ 257 (447)
+.......+++++.+....++++++||+||+++++|.++++++||++|+++|++||+++|+|||+|||||+|+.|
T Consensus 156 -----~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~ 230 (339)
T PF00202_consen 156 -----DEEEQACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFF 230 (339)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSS
T ss_pred -----hhhHHHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCCcc
Confidence 223344455666666555567899999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHH
Q 013204 258 GCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQV 337 (447)
Q Consensus 258 ~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~ 337 (447)
++++++++||++|+||+++|| +|+|++++++++++.+.. ..+++|+.++|++|++++++|+.++++++.+++
T Consensus 231 a~~~~gv~PDiv~~gK~l~gG-~p~sav~~~~~i~~~~~~-------~~~~~T~~g~p~~~aaa~~~l~~~~~~~~~~~~ 302 (339)
T PF00202_consen 231 ASEHYGVDPDIVTFGKGLGGG-LPISAVLGSEEIMEAFQP-------GSHGSTFGGNPLSCAAALATLEILEEEDLLERV 302 (339)
T ss_dssp GHHHHTSSSSEEEEEGGGGTT-SSEEEEEEEHHHHTTSCT-------TSSTCTTTT-HHHHHHHHHHHHHHHHTTHHHHH
T ss_pred ceecccccCcccccccchhhh-hhcccccccchhhccccc-------cccccccccchHhhhhhhhHHHhhccHHHHHHH
Confidence 999999999999999999999 899999999999988752 247889999999999999999999999999999
Q ss_pred HHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEee
Q 013204 338 NKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFA 372 (447)
Q Consensus 338 ~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~ 372 (447)
++++++|++.|++| ..++.+..++|.|+++++++.
T Consensus 303 ~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~~ie~~ 338 (339)
T PF00202_consen 303 RELGERLREGLRELAARYPLIGEVRGIGLMIGIELV 338 (339)
T ss_dssp HHHHHHHHHHHHHHHHHTTTEEEEEEETTEEEEEES
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEeeeCeEEEEEEE
Confidence 99999999999999 556999999999999999985
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-58 Score=454.18 Aligned_cols=372 Identities=28% Similarity=0.512 Sum_probs=314.7
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
++|+++++++|++++|.|||+||||.+++++.+|||+||+|.+|+.++++++...+. ...+++..+++++++++.
T Consensus 21 ~~p~~~~~~~G~~l~d~~G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~--- 95 (396)
T PRK04073 21 PLPIVISEAEGVWVKDPEGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLTSR--AFHSDQLGPWYEKVAKLT--- 95 (396)
T ss_pred CCCceEEeeeecEEEECCCCEEEEcCCCHHhccCCCCCHHHHHHHHHHHhhcccccc--ccCCHHHHHHHHHHHhcC---
Confidence 568999999999999999999999999999999999999999999999988654432 236788899999999875
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHh-cC-CCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNA-LG-RPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH 171 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~-~~-~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
+.++++|++||+|||+.|||+++.++.. +| .+++++||.++++|||++.+++++++.+.+...+....+.+.++++++
T Consensus 96 ~~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 175 (396)
T PRK04073 96 GKDMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPYGD 175 (396)
T ss_pred CCCeEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCCCC
Confidence 3469999999999999999999987432 23 245788999999999999999988886655554443333333444322
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCC
Q 013204 172 YWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG 251 (447)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g 251 (447)
++++++.+. +++++|++||+++++|.+.++++||++|+++|++||+++|+||+|+|||
T Consensus 176 ------------------~~~l~~~i~----~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g 233 (396)
T PRK04073 176 ------------------LEALKAAIT----PNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLG 233 (396)
T ss_pred ------------------HHHHHHhcc----cCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCC
Confidence 366666663 4689999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh
Q 013204 252 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER 331 (447)
Q Consensus 252 ~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~ 331 (447)
++|..++++++++.||++++||++++|++|+|++++++++++.+.. ..+..|++++|+++++++++|+.++++
T Consensus 234 ~~g~~~~~~~~~~~pdi~~~sK~lg~gg~~ig~~~~~~~i~~~~~~-------~~~~~t~~~~~~~~aaa~aaL~~~~~~ 306 (396)
T PRK04073 234 RTGKLFACDWDNVTPDMYILGKALGGGVFPISCVAANRDILGVFTP-------GSHGSTFGGNPLACAVSIAALEVLEEE 306 (396)
T ss_pred cCcHHHHhhhcCCCCCEEEecccccCCCCcceEEEEcHHHHhhhcC-------CCCCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 9998777788899999999999999988999999999999988752 245678999999999999999988778
Q ss_pred cHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEE
Q 013204 332 NIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIM 410 (447)
Q Consensus 332 ~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR 410 (447)
++.++.+++++++.+.|+++ ..+.+..+++.|.++.+++... ...+.++|+++||++.+.+ +.||
T Consensus 307 ~l~~~~~~~~~~l~~~L~~l-~~~~i~~~~~~g~~~~~~~~~~-------------~~~~~~~l~~~Gv~~~~~~~~~iR 372 (396)
T PRK04073 307 KLPERSLELGEYFKEQLKEI-DNPMIKEVRGRGLFIGVELNEP-------------ARPYCEALKEEGLLCKETHETVIR 372 (396)
T ss_pred CHHHHHHHHHHHHHHHHHhh-cCCcccceecceEEEEEEecch-------------HHHHHHHHHHCCeEEecCCCCEEE
Confidence 88899999999999999887 3455677889999988887531 3458888999999998765 6799
Q ss_pred EecCCCCCHHHHHHHHHHHHHHH
Q 013204 411 MSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 411 ~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
|+||+.+|+++|++++++|++++
T Consensus 373 i~p~l~~t~e~i~~~~~~l~~~l 395 (396)
T PRK04073 373 FAPPLVITKEELDWAFEKIKAVL 395 (396)
T ss_pred EECCcccCHHHHHHHHHHHHHHh
Confidence 99999999999999999999875
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-58 Score=452.05 Aligned_cols=374 Identities=28% Similarity=0.496 Sum_probs=319.3
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
.+|+++++++|+++||.|||+|+||.+++++++|||+||+|.+|+.++++++..... ...++...++++++++..
T Consensus 12 ~~~~~~~~~~G~~~~d~dG~~~lD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~la~~l~~~~--- 86 (389)
T PRK01278 12 RADLAFERGEGVWLIDEDGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWHVSN--LYRIPEQERLAERLVENS--- 86 (389)
T ss_pred CCCceEEeeecCEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhcCcccc--ccCChHHHHHHHHHHhhC---
Confidence 578999999999999999999999999999999999999999999999987543322 236788899999999885
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcc
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYW 173 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
+.++++|++||+||++.|+++++.++...|++++++||+++++|||++.+++..++.+.+...+......+..+++++
T Consensus 87 ~~~~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-- 164 (389)
T PRK01278 87 FADKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGD-- 164 (389)
T ss_pred CCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCC--
Confidence 456999999999999999999998877777777889999999999999999988877655544332222222233222
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcc
Q 013204 174 RYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRL 253 (447)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~ 253 (447)
++++++.+. +++++|++||+++++|.++++++++++|+++|++||+++|+||||+|+|++
T Consensus 165 ----------------~~~l~~~l~----~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~ 224 (389)
T PRK01278 165 ----------------IEALKAAIT----PNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRT 224 (389)
T ss_pred ----------------HHHHHHhhC----CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcC
Confidence 377777764 378999999999999989999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcH
Q 013204 254 GTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNI 333 (447)
Q Consensus 254 g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~ 333 (447)
|..++++++++.||++++||++++| +|+|++++++++++.+. ...+.+|++++|+++++++++|+.++++++
T Consensus 225 g~~~~~~~~~~~pdi~t~sK~l~~G-~~ig~~~~~~~~~~~~~-------~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~ 296 (389)
T PRK01278 225 GKLFAHEWAGVTPDIMAVAKGIGGG-FPLGACLATEEAAKGMT-------PGTHGSTYGGNPLAMAVGNAVLDVILAPGF 296 (389)
T ss_pred CcceeecccCCCCCEEEEehhccCC-cceEEEEEcHHHHhccC-------CCCCCCCCCccHHHHHHHHHHHHHHhhhHH
Confidence 9877778889999999999999988 89999999999988775 335667899999999999999999887788
Q ss_pred HHHHHHHHHHHHHhHhhc-cCCC-ceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEE
Q 013204 334 VEQVNKIAPKFQDGVKAF-SDSP-IIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIM 410 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l-~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR 410 (447)
.++++++++++++.|+++ ..++ ++..+++.|.++++++..+ ...+.+.|+++||++.+.+ +.+|
T Consensus 297 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~v~g~G~~~~i~~~~~-------------~~~~~~~l~~~GV~~~p~~~~~lR 363 (389)
T PRK01278 297 LDNVQRMGLYLKQKLEGLVDRFPDVIEEVRGKGLLLGLKCVVP-------------NRDLVQALRDEGLLTVGAGDNVVR 363 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCceeeEecccEEEEEEEecC-------------HHHHHHHHHHCCeEEeecCCCEEE
Confidence 899999999999999987 4566 7778899999988877431 3468889999999999876 6799
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 411 MSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 411 ~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
|+||+.+++++|++++++|++++++
T Consensus 364 ~~p~~~~~~~~i~~~l~~l~~~l~~ 388 (389)
T PRK01278 364 LLPPLIITEEEIDEALERLERAAES 388 (389)
T ss_pred EeCCcccCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998865
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-56 Score=440.75 Aligned_cols=380 Identities=32% Similarity=0.552 Sum_probs=316.7
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
.++|+++.+++|++++|.||++|+||.+++++++|||+||+|.+++.++++++.... . ...+++..++++++++..
T Consensus 20 ~~~~~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~-~-~~~~~~~~~l~~~l~~~~-- 95 (403)
T PRK05093 20 APAEFIPVRGEGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVKALKEQGEKLWHIS-N-VFTNEPALRLAKKLIDAT-- 95 (403)
T ss_pred CCCCeeEEEeecCEEEeCCCCEEEEcCcCHHhccCCCCCHHHHHHHHHHHHhcCccc-C-ccCCHHHHHHHHHHHhhC--
Confidence 367899999999999999999999999999999999999999999999998753322 1 235677889999999985
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCc
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHY 172 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
+.++++|++||+|||+.|+|+++.++..++..+++++|.++++|||++.++++.++.+.+..++........++++++
T Consensus 96 -~~~~~~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d- 173 (403)
T PRK05093 96 -FAERVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFND- 173 (403)
T ss_pred -CCCEEEEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCCCC-
Confidence 346999999999999999999998865444456789999999999999888887776554444432222233333321
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc
Q 013204 173 WRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252 (447)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~ 252 (447)
++++++.+. +.+++|++||+++++|.++++.+|+++|+++|++||+++|+||+|+|+|+
T Consensus 174 -----------------~~~l~~~l~----~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~ 232 (403)
T PRK05093 174 -----------------LAAVKAVID----DHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGR 232 (403)
T ss_pred -----------------HHHHHHHhc----CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCC
Confidence 367777664 46899999999999999989999999999999999999999999999999
Q ss_pred cccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhc
Q 013204 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERN 332 (447)
Q Consensus 253 ~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~ 332 (447)
+|..++.+.+++.||+++|||++++| +|+|++++++++++.+. ...+..+++++|++++++.++|+.+..++
T Consensus 233 ~g~~~~~~~~~~~pdi~s~sK~l~~G-~rig~vv~~~~i~~~l~-------~~~~~~t~~~~~~~~~aa~a~L~~~~~~~ 304 (403)
T PRK05093 233 TGDLFAYMHYGVTPDILTSAKALGGG-FPIGAMLTTAEIASHFK-------VGTHGSTYGGNPLACAVAEAVFDIINTPE 304 (403)
T ss_pred CccchhhhhcCCCCCEEEecccccCC-cceEEEEEcHHHHhhcC-------CCCCCCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 99877777889999999999999987 89999999999998875 22455688899999999999999887778
Q ss_pred HHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEE
Q 013204 333 IVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIM 410 (447)
Q Consensus 333 ~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR 410 (447)
+.++++++++++++.|+++ ..++....+++.|.++++.+..... .....+...|+++||++.+.+ +.+|
T Consensus 305 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~l~~~~~---------~~~~~~~~~l~~~Gv~v~~~g~~~lR 375 (403)
T PRK05093 305 VLEGVKARRQRFVDGLQKINQKYGVFSEIRGMGLLIGAELKPQYK---------GRARDFLNAAAEEGVMVLVAGPDVLR 375 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeEeEeeCceEEEEEecCcch---------hHHHHHHHHHHHCCeEEecCCCCEEE
Confidence 8899999999999999987 4456667888889999988853210 024568899999999999876 6799
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 411 MSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 411 ~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
++|++.+++++|++++++|++++.++
T Consensus 376 l~~~~~~~~~~i~~~~~~l~~~l~~~ 401 (403)
T PRK05093 376 FAPSLVIEEADIDEGLARFEKAVAKV 401 (403)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988653
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-55 Score=430.10 Aligned_cols=380 Identities=31% Similarity=0.510 Sum_probs=315.4
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
+.|+++++++|++++|.||++||||++++++.++||+||+|.+|+.+++++....+.. ..++...++++++++.+
T Consensus 18 ~~~~~~~~~~g~~~~~~~g~~~lD~~s~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~--- 92 (401)
T TIGR01885 18 PLPVVFSKAEGVHVWDVEGKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLTLSSRA--FYNDVFGEFAEYVTKLF--- 92 (401)
T ss_pred CCCceEEeeecCEEEeCCCCEEEEcccCHhhccCCCCCHHHHHHHHHHHHhccccccc--cCCHHHHHHHHHHHhhc---
Confidence 4678899999999999999999999999999999999999999999999876543322 26788999999999986
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhc-C-CCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNAL-G-RPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH 171 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~-~-~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
+.++++|++||++||+.|+++++.++..+ + .+++..|+.++++|||++.++++.++.+.+...++...+....++++
T Consensus 93 ~~~~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 171 (401)
T TIGR01885 93 GYDKVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPYN- 171 (401)
T ss_pred CCCEEEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCCC-
Confidence 35699999999999999999998875432 2 23578899999999999999988877544333333222222222222
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCC
Q 013204 172 YWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG 251 (447)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g 251 (447)
+++++++++... ++++++|++||+++++|.+.|+.+||++|+++|++||+++|+||||+|+|
T Consensus 172 -----------------d~~~le~~l~~~-~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g 233 (401)
T TIGR01885 172 -----------------NLEALEEALEDH-GPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLG 233 (401)
T ss_pred -----------------CHHHHHHHHHhc-CCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCC
Confidence 147788877654 35789999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh
Q 013204 252 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER 331 (447)
Q Consensus 252 ~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~ 331 (447)
++|..++.+++++.||++++||++++|++|+|++++++++++.+.. ..+.+|++++|++++++.++|+.++++
T Consensus 234 ~~G~~~~~~~~~~~~di~~~gK~l~~g~~~ig~v~~~~~i~~~~~~-------~~~~~t~~~~p~~~~aa~a~L~~i~~~ 306 (401)
T TIGR01885 234 RTGKLLCVDHENVKPDIVLLGKALSGGVYPVSAVLADDDVMLTIKP-------GEHGSTYGGNPLACAVAVAALEVLEEE 306 (401)
T ss_pred ccchhhHHhhcCCCCCEEEeeccccCCCCCcEEEEEcHHHHhhccC-------CCCCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 9998877777889999999999999988899999999999888752 134568889999999999999999877
Q ss_pred cHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEE
Q 013204 332 NIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIM 410 (447)
Q Consensus 332 ~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR 410 (447)
++.++++++++++++.|+++ ..+++..+++.|++..+.+..+... .....+.+.|.++||++.+.+ +.+|
T Consensus 307 ~l~~~~~~~~~~~~~~L~~l-~~~~~~~~~g~g~~~~i~~~~~~~~--------~~~~~l~~~l~~~Gv~v~~~~~~~lR 377 (401)
T TIGR01885 307 KLAENAEKLGEIFRDQLKKL-PKPIITEVRGRGLLNAIVIDESKTG--------RTAWDLCLKLKEKGLLAKPTHGNIIR 377 (401)
T ss_pred cHHHHHHHHHHHHHHHHHhc-cCCceeEEeecCeeEEEEeccCcch--------hHHHHHHHHHHhCCEEEEecCCCEEE
Confidence 88899999999999999988 3466678889999999888543210 024568889999999998875 6799
Q ss_pred EecCCCCCHHHHHHHHHHHHHHH
Q 013204 411 MSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 411 ~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
|+||+.+|+++|++++++|++++
T Consensus 378 i~p~l~~t~~~i~~~l~~l~~~l 400 (401)
T TIGR01885 378 LAPPLVITEEQLDEGLEIIKKVI 400 (401)
T ss_pred EeCCccCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999876
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-55 Score=430.36 Aligned_cols=372 Identities=33% Similarity=0.587 Sum_probs=311.7
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
..|+++++++|+++||.|||+||||.+++++++|||+||++.+++.+++++...... ..+++...++++++++.++..
T Consensus 24 ~~~~~~~~~~G~~~~d~dg~~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~~~ 101 (398)
T PRK03244 24 TPPLALVRGEGAVVWDVDGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGHVSN--LFATEPQIALAERLVELLGAP 101 (398)
T ss_pred CCCceEEEeeecEEEECCCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhccCccC--ccCCHHHHHHHHHHHHhCCCC
Confidence 368999999999999999999999999999999999999999999999987543221 235677889999999987433
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcc
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYW 173 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
..++++|++||++|++.|+++++.. +++++|.++++|||++..++..++...+...+......+..+++++
T Consensus 102 ~~~~v~~~~sgsea~~~al~~~~~~-------g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-- 172 (398)
T PRK03244 102 EGGRVFFCNSGAEANEAAFKLARLT-------GRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPYGD-- 172 (398)
T ss_pred CCCEEEEeCchHHHHHHHHHHHHHH-------CCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCCCC--
Confidence 3479999999999999999988743 3578999999999999888887775443333322212222222211
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcc
Q 013204 174 RYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRL 253 (447)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~ 253 (447)
++++++.+. +++++|++||+++++|.++|+++|+++|+++|++||+++|+||+|+||||+
T Consensus 173 ----------------~~~l~~~~~----~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~ 232 (398)
T PRK03244 173 ----------------VDALAAAVD----DDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRT 232 (398)
T ss_pred ----------------HHHHHHhhc----CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccc
Confidence 366777663 478999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcH
Q 013204 254 GTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNI 333 (447)
Q Consensus 254 g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~ 333 (447)
|..++++++++.||+++|||++++| +|+|++++++++++.+. ...+.+||+++|++++++.++|+.++++++
T Consensus 233 g~~~~~~~~~~~pDi~t~sK~l~~G-~~ig~~~~~~~~~~~~~-------~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~ 304 (398)
T PRK03244 233 GAWFAHQHDGVTPDVVTLAKGLGGG-LPIGACLAFGPAADLLT-------PGLHGSTFGGNPVACAAALAVLDTIASEGL 304 (398)
T ss_pred chHHhhhhhCCCCCEEEEchhhhCC-cccEEEEEcHHHHhhcc-------CCCCcCCCCCCHHHHHHHHHHHHHHHhccH
Confidence 9877788889999999999999988 89999999999988775 234667899999999999999998888889
Q ss_pred HHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEEEe
Q 013204 334 VEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIMMS 412 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR~~ 412 (447)
.++++++++++++.|+++ +++.+..+++.|.++++.+..+ ....+.+.|+++|+++.+.+ +.+|++
T Consensus 305 ~~~~~~~~~~l~~~L~~~-~~~~~~~v~g~g~~~~i~~~~~------------~~~~~~~~l~~~Gv~~~~~~~~~iR~~ 371 (398)
T PRK03244 305 LENAERLGEQLRAGIEAL-GHPLVDHVRGRGLLLGIVLTAP------------VAKAVEAAAREAGFLVNAVAPDVIRLA 371 (398)
T ss_pred HHHHHHHHHHHHHHHHhc-CCCceeeEeeccEEEEEEEecc------------HHHHHHHHHHHCCeEEeecCCCEEEEE
Confidence 999999999999999987 4566778889999999998532 24568899999999998765 789999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 413 PPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 413 ~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
|++.++++||++++++|++++.+++
T Consensus 372 p~~~~t~~~i~~~~~~l~~~l~~~~ 396 (398)
T PRK03244 372 PPLIITDAQVDAFVAALPAILDAAA 396 (398)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999997654
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-55 Score=429.91 Aligned_cols=398 Identities=26% Similarity=0.486 Sum_probs=323.6
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
..+|+++++++|+++||.||++||||.+++++.+|||+||++.+++.+++++....+. ....++...++++++++..+.
T Consensus 21 ~~~p~~~~~~~G~~l~d~dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~~~~ 99 (425)
T PRK08088 21 QIHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCF-QVLAYEPYLELCEKMNQKVPG 99 (425)
T ss_pred CCCCceEEeeeeCEEEeCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHhhCCCccc-cccCCHHHHHHHHHHHHhCCC
Confidence 3568999999999999999999999999999999999999999999999987643211 123467888999999998632
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCc-cccCCCCCCCCcceecCCCC
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLP-ALHQKFDLPAPFVLHTDCPH 171 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 171 (447)
...++++|++||+||++.|||+++.+ +++.+||.|+++|||.+.++++.++.. .+..++......+.++++|.
T Consensus 100 ~~~~~~~f~~sGsea~e~Alklar~~------~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 173 (425)
T PRK08088 100 DFAKKTLLVTTGSEAVENAVKIARAA------TKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPC 173 (425)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHHHHH------hCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCc
Confidence 22259999999999999999999877 456789999999999999988887642 34444443333344444443
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHh-hCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCC
Q 013204 172 YWRYAHPGETEEEYSTRLANNLEDLILK-EGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250 (447)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~le~~l~~-~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~ 250 (447)
.+. ..+ ...+++++++++.. ..++++++||+||+++++|.++++++++++|.++|++||+++|.||+|+|+
T Consensus 174 ~~~----~~~----~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~ 245 (425)
T PRK08088 174 PLH----GVS----EDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGA 245 (425)
T ss_pred ccc----Ccc----HHHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 211 111 11235678887753 235789999999999999999999999999999999999999999999999
Q ss_pred CccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh
Q 013204 251 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE 330 (447)
Q Consensus 251 g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~ 330 (447)
|++|..++++.+++.||+.+|||++++| +|+|++++++++++.+.. ..+.+|++++|++++++.+.|+.++.
T Consensus 246 g~~g~~~~~~~~~~~pdi~s~sK~l~~G-~rig~v~~~~~~~~~~~~-------~~~~~t~~~~~~~~~a~~~~l~~~~~ 317 (425)
T PRK08088 246 GRTGTLFAMEQMGVAADLTTFAKSIAGG-FPLAGVTGRAEVMDAIAP-------GGLGGTYAGNPIACAAALAVLKVFEQ 317 (425)
T ss_pred CcCcchhHHhhcCCCCCEEEEeccccCC-CcceeeEecHHHHhhcCC-------CCCCCCCCcCHHHHHHHHHHHHHHHh
Confidence 9999877777888999999999999988 899999999999998852 24567899999999999999999888
Q ss_pred hcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC---
Q 013204 331 RNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--- 406 (447)
Q Consensus 331 ~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g--- 406 (447)
+++.+++++.++++++.|+++ ..++.+..+++.|+++++.+.++..+..+ .......+.+.|+++||++.+.+
T Consensus 318 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~g~G~~~~l~l~~~~~~~~p---~~~~~~~l~~~~~~~Gv~~~~~~~~~ 394 (425)
T PRK08088 318 ENLLQKANALGEKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHSKP---NAKLTAQIVARARDKGLILLSCGPYY 394 (425)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccceEEEEEEecCCCCCCC---CHHHHHHHHHHHHhCCCEEecCCCCC
Confidence 889999999999999999888 56777888999999999999643221111 11235668899999999887653
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 407 DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 407 ~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+.+|++|++.+++++|++++++|++++.++
T Consensus 395 ~~iRl~~~~~~t~~ei~~~i~~l~~~l~~~ 424 (425)
T PRK08088 395 NVLRILVPLTIEDAQIRQGLEIIAQCFDEA 424 (425)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHHHHHHhh
Confidence 779999999999999999999999998764
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-54 Score=424.43 Aligned_cols=366 Identities=32% Similarity=0.499 Sum_probs=305.7
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
.+|+++++++|+++||.|||+||||++++++.+|||+||+|.+++.+++++....+. ...++...++++++.+..
T Consensus 10 ~~~~~~~~~~G~~~~d~~G~~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~la~~l~~~~--- 84 (377)
T PRK02936 10 RFPIDIVKGKGTKVTDNNGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWHVSN--LFTNSLQEEVASLLAENS--- 84 (377)
T ss_pred CCCceEEEeecCEEEeCCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcccccc--ccCCHHHHHHHHHHHhcC---
Confidence 578999999999999999999999999999999999999999999999987543322 235677788888888764
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcc
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYW 173 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
+.++++|++||++||+.|+++++.+ +++++|++++++|||++...+..++.+.+...+.........++++
T Consensus 85 ~~~~~~~~~sG~~a~~~A~~~a~~~------~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 155 (377)
T PRK02936 85 AGDLVFFCNSGAEANEAALKLARKH------TGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFN--- 155 (377)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHh------cCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCC---
Confidence 3468999999999999999998866 5678899999999999988888776554444433222222222221
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcc
Q 013204 174 RYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRL 253 (447)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~ 253 (447)
+++++++.+. +++++|++||+++++|.++++++++++|+++|++||+++|+||+|+|||++
T Consensus 156 ---------------d~~~l~~~~~----~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~ 216 (377)
T PRK02936 156 ---------------DIKALKEVMN----EEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRT 216 (377)
T ss_pred ---------------CHHHHHHhcc----CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcC
Confidence 1366777664 468999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcH
Q 013204 254 GTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNI 333 (447)
Q Consensus 254 g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~ 333 (447)
|.+++++.+++.||++++||++++| +|+|++++++++++.+.. ..+.+|++++|++++++.++|+.+..+++
T Consensus 217 g~~~~~~~~~~~~di~t~sK~l~~G-~~ig~v~~~~~~~~~~~~-------~~~~~t~~~~~~~~aaa~a~l~~~~~~~~ 288 (377)
T PRK02936 217 GTLFAYEQFGLDPDIVTVAKGLGNG-IPVGAMIGKKELGTAFGP-------GSHGSTFGGNPLAMAAAKEVLQVIKQPSF 288 (377)
T ss_pred chhhHHHhhCCCCcEEEEcccccCC-CccEEEEEcHHHHhhccC-------CCCCCCCCCCHHHHHHHHHHHHHHHhccH
Confidence 9877777788999999999999987 899999999999988752 23556888999999999999998877788
Q ss_pred HHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEEE
Q 013204 334 VEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIMM 411 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR~ 411 (447)
.++++++++++++.|+++ .+++.+..+++.|.++++++.++ ...+.+.|.++||++.+.+ +.+||
T Consensus 289 ~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~-------------~~~~~~~l~~~gv~v~~~g~~~lRi 355 (377)
T PRK02936 289 LEEVQEKGEYFLQKLQEELEHLECVKNIRGKGLMIGIECTEE-------------VAPVIEQLREEGLLVLSAGPNVIRL 355 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeEeecceEEEEEecch-------------HHHHHHHHHHCCeEEecCCCCEEEE
Confidence 899999999999999885 55677777888898888887642 3457888999999999877 67999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHH
Q 013204 412 SPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 412 ~~~~~~t~e~i~~~~~~l~~~l 433 (447)
+||+.+++++|++++++|++++
T Consensus 356 ~p~~~~~~~~i~~~i~~l~~~~ 377 (377)
T PRK02936 356 LPPLVVTKEELDQAVYLLKKVL 377 (377)
T ss_pred ECCcccCHHHHHHHHHHHHHhC
Confidence 9999999999999999998763
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-56 Score=384.85 Aligned_cols=406 Identities=26% Similarity=0.510 Sum_probs=333.9
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
..|+.|++++|.|++|.+|++|||+.++. ..-||+||+|++|...++....... .+.++...+-++.+...++
T Consensus 28 sDP~kivRaq~QYmfDE~g~~yLDCInNV--aHvghchp~VV~A~~kQmat~~tN~---RFlhd~lv~cA~~l~stlP-- 100 (452)
T KOG1403|consen 28 SDPLKIVRAQGQYMFDEEGTRYLDCINNV--AHVGHCHPEVVRAGAKQMATISTNN---RFLHDELVQCARTLTSTLP-- 100 (452)
T ss_pred CCchhhehhccceeeccCcccHHHHhhhh--hhcccCCHHHHHHHHHHHhHhcccc---hhhHHHHHHHHHHHhhcCC--
Confidence 47899999999999999999999999886 5578999999999999988754433 3467888899999988875
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCC-CcceecCCCCc
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPA-PFVLHTDCPHY 172 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 172 (447)
+.+-++|++||+|||+.|++++|.+ +++..+|.++.+|||+..-.+.++-- -+..+-+... ..++..|||+.
T Consensus 101 eLsvc~F~NSGSEANDLALRLAR~f------tkhqDvItldHAYHGHl~s~mE~SPY-KF~~g~~v~kpd~VHVAPcPDv 173 (452)
T KOG1403|consen 101 ELSVCFFVNSGSEANDLALRLARNF------TKHQDVITLDHAYHGHLQSVMEVSPY-KFNQGGGVAKPDYVHVAPCPDV 173 (452)
T ss_pred CceEEEEecCCchhhHHHHHHHHhh------cccCceEEEechhccceeeeeeccce-eccCCCCcCCCceeEecCCccc
Confidence 4778999999999999999999988 67889999999999996544443311 1222333333 34567789998
Q ss_pred ccCCCCCCChh--HHHHHHHHHHHHHHHhh--CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc
Q 013204 173 WRYAHPGETEE--EYSTRLANNLEDLILKE--GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC 248 (447)
Q Consensus 173 ~~~~~~~~~~~--~~~~~~~~~le~~l~~~--~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~ 248 (447)
|+.+......+ +.+....+++++++... ....++++|.|..|+-||.+.||.+|++.+++..+.+|-+.|.||||+
T Consensus 174 yrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQv 253 (452)
T KOG1403|consen 174 YRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQV 253 (452)
T ss_pred cccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhh
Confidence 87654432211 22233346666666432 345689999999999999999999999999999999999999999999
Q ss_pred CCCcccc-ccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHH
Q 013204 249 AFGRLGT-MFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKI 327 (447)
Q Consensus 249 g~g~~g~-~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~ 327 (447)
||||.|. .|+++.++..|||++++|.||+| .|+++++.++++.+.+... ......||++||++|+++++++++
T Consensus 254 GFGRvG~hyWafq~y~fiPDIVtmgKpmGNG-hPVa~VattkeIA~Af~at-----gv~YFNTyGGnPVsCAv~laVm~v 327 (452)
T KOG1403|consen 254 GFGRVGSHYWAFQTYNFIPDIVTMGKPMGNG-HPVAAVATTKEIAQAFHAT-----GVEYFNTYGGNPVSCAVGLAVMRV 327 (452)
T ss_pred cccccchhhhhhhhhccccchheecccCCCC-CeeeEEeccHHHHHHhccc-----cceehhccCCCchhHHHHHHHHHH
Confidence 9999997 67899999999999999999999 7999999999999999743 233446999999999999999999
Q ss_pred HhhhcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHH-cCceEEee
Q 013204 328 YKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEK-HGMLVRVS 405 (447)
Q Consensus 328 ~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~ 405 (447)
++.+++.++.++.+.+|...|.++ .+++.+++++|.|+|++|++..+.....|.. +.+..+..+|++ ++|+++..
T Consensus 328 ~e~E~Lq~ha~~vG~~L~~lL~~~k~kh~~IGDvRGvGLFiGIdLVkD~~tRtP~t---k~A~~~v~rlke~y~VLlsaD 404 (452)
T KOG1403|consen 328 CEDENLQEHAQQVGEKLEVLLRRLKQKHECIGDVRGVGLFIGIDLVKDRKTRTPDT---KEAHWVVNRLKELYRVLLSAD 404 (452)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhhhccceeccccceEEEeeeeecccccCCCcH---HHHHHHHHHHHHhhhEEEecC
Confidence 999999999999999999999988 7899999999999999999987665444332 235566777765 56888865
Q ss_pred C---CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 013204 406 G---DNIMMSPPFIMSPEEVDELISKYGKALKATEERVKE 442 (447)
Q Consensus 406 g---~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~~~ 442 (447)
| +.+.|.||+..+++++++++..|+++|.-+.+++.+
T Consensus 405 GPh~NilKiKPPmCFneena~e~v~~ld~iLT~mee~~~s 444 (452)
T KOG1403|consen 405 GPHRNILKIKPPMCFNEENADEFVLGLDEILTVMEERLAS 444 (452)
T ss_pred CCCCceeecCCCcccChhhHHHHHHHHHHHHHHHHHHHhh
Confidence 5 679999999999999999999999999988777655
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-54 Score=425.76 Aligned_cols=389 Identities=25% Similarity=0.410 Sum_probs=307.2
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
.++|+++++++|+++||.|||+||||.+++++.++||+||+|++|+.+++++...+ ..+++...++++++++.++.
T Consensus 28 ~~~p~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~----~~~~~~~~~lae~l~~~~~~ 103 (423)
T TIGR00713 28 GPTPFFVARGKGAYLYDVDGNEYIDYVLSWGPLILGHAHPRVVEAVKEALERGTSY----GAPTEAEILLAKEIISRVPS 103 (423)
T ss_pred CCCCeeEEeccCCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCcC----CCCCHHHHHHHHHHHHhCCc
Confidence 35789999999999999999999999999999999999999999999999875432 34677889999999998742
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCc--cccCCCCCCCCcceecCCC
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLP--ALHQKFDLPAPFVLHTDCP 170 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 170 (447)
.++++|++||+||++.|+|+++.+ +++++||.++++|||++...+..++.. .....+..... ....+
T Consensus 104 --~~~v~~~~sGseA~e~Alk~ar~~------~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 172 (423)
T TIGR00713 104 --VEMVRFVNSGTEATMSAVRLARGY------TGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVP---EDFAK 172 (423)
T ss_pred --ccEEEEeCCHHHHHHHHHHHHHHh------hCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCC---ccccc
Confidence 469999999999999999999987 456899999999999976666544321 11111110000 00000
Q ss_pred CcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCC
Q 013204 171 HYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250 (447)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~ 250 (447)
..+.. | +++++++++.+... ++++++||+||+++++|.++++++|+++|+++|++||+++|+||||+||
T Consensus 173 ~~~~~--~--------~~d~~~l~~~i~~~-~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~ 241 (423)
T TIGR00713 173 LTLVL--P--------YNDLEALEEVFEEY-GEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGF 241 (423)
T ss_pred ceEEe--C--------CCCHHHHHHHHHHc-CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccccc
Confidence 00110 1 11247788877643 3578999999999999988888999999999999999999999999999
Q ss_pred CccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh
Q 013204 251 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE 330 (447)
Q Consensus 251 g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~ 330 (447)
|+|..++++++++.||+++|||++++| +|+|++++++++++.+... +.+.+.+|++++|+++++++++|+.+++
T Consensus 242 -r~g~~~~~~~~~~~pDi~t~sK~l~~G-~pig~v~~~~~i~~~~~~~----~~~~~~~T~~~~~~~~aaa~a~l~~~~~ 315 (423)
T TIGR00713 242 -RVALGGAQEYFGVEPDLTTLGKIIGGG-LPVGAFGGRREIMERLAPE----GPVYQAGTLSGNPLAMAAGLATLKLLDE 315 (423)
T ss_pred -ccCcchhHHHhCCCcchhhhhhhhcCC-CceeeeeEHHHHHHhhCcC----CCeeeccCCCCCHHHHHHHHHHHHHHhc
Confidence 888777778889999999999999988 8999999999999988521 1234667999999999999999999987
Q ss_pred hcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCC--CCCCcchHHHHHHHHHHcCceEEeeC-
Q 013204 331 RNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEP--FPPEWGIGAYFGAQCEKHGMLVRVSG- 406 (447)
Q Consensus 331 ~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~Gi~~~~~g- 406 (447)
+++.++++++++++++.|.++ .+++++..+++.|.++++.+..+...+.. ..........+.+.|+++||++.+.+
T Consensus 316 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~ 395 (423)
T TIGR00713 316 EGVYTELDELAKRLAEGLSEVLEDTGIPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLDKGVFLPPSQF 395 (423)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHHHCCeEEecCCc
Confidence 788999999999999999876 56777788899999999988643211100 00011123457788999999987654
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 407 DNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 407 ~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+.+|++|+ +|+++|++++++|++++++
T Consensus 396 ~~~~l~~~--~t~~~i~~~~~~l~~~l~~ 422 (423)
T TIGR00713 396 EACFLSAA--HTEEDIENTIEAAEEVFAE 422 (423)
T ss_pred cceeeECC--CCHHHHHHHHHHHHHHHhh
Confidence 46899976 8999999999999999865
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-53 Score=419.99 Aligned_cols=377 Identities=29% Similarity=0.501 Sum_probs=310.6
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
.+.|+++.+++|+|+||.||++||||++++++.++||+||+|.+++.++++++...+. ...++...++++++++++
T Consensus 21 ~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~~Gh~~~~i~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~-- 96 (401)
T PRK00854 21 KPLDVVLTRGEGVWVWDTDGNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLTLTSR--AFRNDQLAPLYEELAALT-- 96 (401)
T ss_pred CCCCceEEeeeeCEEEECCCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhcccccc--ccCCHHHHHHHHHHHhhC--
Confidence 3568899999999999999999999999999999999999999999999988654332 235678899999999886
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhc-CC-CCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNAL-GR-PNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP 170 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~-~~-~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (447)
+.++++|++||++|++.||++++.++... |. +++++||+++.+|||++...+..++.+..+..+......+..++++
T Consensus 97 -~~~~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (401)
T PRK00854 97 -GSHKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPFG 175 (401)
T ss_pred -CCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCCC
Confidence 34689999999999999999998774321 32 3457899999999999988777666554433333222333333332
Q ss_pred CcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCC
Q 013204 171 HYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250 (447)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~ 250 (447)
+ ++++++.+. +++++|++||+++++|.+.++++||++|+++|++||+++|+||+|+|+
T Consensus 176 d------------------~~~le~~i~----~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~ 233 (401)
T PRK00854 176 D------------------AEALEAAIT----PNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGL 233 (401)
T ss_pred C------------------HHHHHHHhC----CCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCC
Confidence 2 377777664 368899999999999999999999999999999999999999999999
Q ss_pred CccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh
Q 013204 251 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE 330 (447)
Q Consensus 251 g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~ 330 (447)
|++|..++.+++++.||++++||++++|++|+|++++++++++.+. ...+..+++++|+++++++++|+.+++
T Consensus 234 g~~g~~~~~~~~g~~~D~~~~~K~l~gg~~~ig~v~~~~~~~~~l~-------~~~~~~t~~~~~~~~aa~~a~L~~l~~ 306 (401)
T PRK00854 234 GRTGKLLAEEHEGIEADVTLIGKALSGGFYPVSAVLSNSEVLGVLK-------PGQHGSTFGGNPLACAVARAALKVLTE 306 (401)
T ss_pred CCCchHhHHhhcCCCCCEEEecccccCCccCeEEEEEcHHHHhccc-------CCCCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 9998776667788999999999999999889999999999988774 224556888999999999999998877
Q ss_pred hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEE
Q 013204 331 RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNI 409 (447)
Q Consensus 331 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~i 409 (447)
+++.++++++++++++.|+++ ....+..+++.|.++.+.+..+.. ....+.+.|+++||++.+.+ +.+
T Consensus 307 ~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~g~g~~~~i~~~~~~~----------~~~~~~~~L~~~GV~v~~~~~~~l 375 (401)
T PRK00854 307 EGMIENAAEMGAYFLEGLRSI-RSNIVREVRGRGLMLAVELEPEAG----------GARQYCEALKERGLLAKDTHDHTI 375 (401)
T ss_pred cCHHHHHHHHHHHHHHHHHhh-ccCceEEEeccceEEEEEEecCch----------hHHHHHHHHHHCCeEEecCCCCEE
Confidence 778899999999999999887 234456678899998887754321 24568899999999998764 689
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 410 MMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 410 R~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
|++|++.+++++|++++++|++++.
T Consensus 376 R~~p~~~~t~e~i~~~i~~l~~~l~ 400 (401)
T PRK00854 376 RLAPPLVITREQVDWALEQIAKVLA 400 (401)
T ss_pred EEeCCcccCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998763
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-54 Score=422.58 Aligned_cols=390 Identities=26% Similarity=0.380 Sum_probs=310.2
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
.+|+++.+++|+++||.||++||||.+++++.+|||+||+|.+++.+++++... ....++...+|++++++.++
T Consensus 31 ~~~~~~~~a~G~~l~d~dG~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~~~~----~~~~~~~~~~la~~L~~~~~-- 104 (426)
T PRK00062 31 GTPRFIERAKGAYLYDVDGNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEKGLS----FGAPTELEVELAELVIELVP-- 104 (426)
T ss_pred CCCeEEEeCcCCEEEeCCCCEEEEcccchhhhhcCCCCHHHHHHHHHHHHhCCc----CCCCCHHHHHHHHHHHHhCC--
Confidence 457899999999999999999999999999999999999999999999987432 13467888999999999863
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCC-CCc
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDC-PHY 172 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 172 (447)
+.++++|++||+|||+.|+|+++.+ +++++||.|+++|||++.+....++........... ... ..+. +..
T Consensus 105 ~~~~v~~~~sGseA~e~Aik~a~~~------~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~ 176 (426)
T PRK00062 105 SIEMVRMVNSGTEATMSAIRLARGY------TGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDS-PGV-PEDFAKHT 176 (426)
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHH------hCCCeEEEEcCccCCchhhhhhccCccccccCCCCC-CCC-Ccccccce
Confidence 4679999999999999999999877 456899999999999997776665432111000000 000 0000 000
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc
Q 013204 173 WRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252 (447)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~ 252 (447)
++. + +++++++++.+... ++++++||+||+++++|.++++++||++|+++|++||+++|+||||+|+ |
T Consensus 177 ~~~--~--------~~d~~~l~~~i~~~-~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~-r 244 (426)
T PRK00062 177 LTA--P--------YNDLEAVEELFEEY-GDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-R 244 (426)
T ss_pred EEc--C--------CCCHHHHHHHHHhC-CCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcc-c
Confidence 110 1 11247777777543 4679999999999999999999999999999999999999999999999 8
Q ss_pred cccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhc
Q 013204 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERN 332 (447)
Q Consensus 253 ~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~ 332 (447)
+|..++.+++++.||++++||++++| +|+|++++++++++.+... +.+.+.+|++++|+++++++++|+.+++++
T Consensus 245 ~g~~~~~~~~~~~pDi~~~gK~l~~G-~p~ga~~~~~~i~~~~~~~----~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~ 319 (426)
T PRK00062 245 VALGGAQGYYGVTPDLTTLGKIIGGG-LPVGAFGGRREIMEQLAPL----GPVYQAGTLSGNPLAMAAGLATLKLLKEPG 319 (426)
T ss_pred cCCccHHHHhCCCcchHhhhhHhhCC-CcceeeeEHHHHHHhhccC----CCceecccCcCCHHHHHHHHHHHHHHhcch
Confidence 88777788889999999999999988 8999999999999988521 233466789999999999999999998888
Q ss_pred HHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCC--CCCCcchHHHHHHHHHHcCceEEeeC-CE
Q 013204 333 IVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEP--FPPEWGIGAYFGAQCEKHGMLVRVSG-DN 408 (447)
Q Consensus 333 ~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~ 408 (447)
+.++++++++++++.|+++ .+++.+..+++.|+++++.+..+...... ...+......+...|+++||++.+.+ +.
T Consensus 320 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv~v~~~~~~~ 399 (426)
T PRK00062 320 FYEELEALTKRLAEGLKEAAKKAGIPLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDEGVYLAPSQFEA 399 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHHCCeEeecCCcCc
Confidence 9999999999999999887 56788888999999999998753211000 00011234568889999999998865 55
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 409 IMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 409 iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
++++ +.+|+++|++++++|+++++++
T Consensus 400 ~~~~--~~~t~~ei~~~~~~l~~~l~~~ 425 (426)
T PRK00062 400 GFVS--AAHTDEDIEKTLEAARKAFAAL 425 (426)
T ss_pred eeee--ccCCHHHHHHHHHHHHHHHHhh
Confidence 7775 8999999999999999998764
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-53 Score=417.41 Aligned_cols=383 Identities=32% Similarity=0.522 Sum_probs=311.1
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
.++|+++.+++|++++|.|||+||||.+++++.++||+||+|.+++.++++++...++. ..++...++++.+.+.+
T Consensus 11 ~~~~~~~~~~~G~~~~d~dg~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~-- 86 (400)
T PTZ00125 11 HPLPVVLKRGKGVFVWDVEGKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLTSRA--FYNDVLGLAEKYITDLF-- 86 (400)
T ss_pred CCCCccEEeeecCEEEeCCCCEEEEcccCHhhccCCcCCHHHHHHHHHHHHhccccccc--ccCHHHHHHHHHHHhCC--
Confidence 35688999999999999999999999999999999999999999999999876544332 23566777777777664
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhc-CC-CCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNAL-GR-PNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP 170 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~-~~-~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (447)
+.++++|++||++||+.||++++.++..+ |. +++++||.++++|||++...+..++...+...+......+..++++
T Consensus 87 -~~~~~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (400)
T PTZ00125 87 -GYDKVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYN 165 (400)
T ss_pred -CCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCC
Confidence 45799999999999999999998654321 21 2468899999999999988888776433222221111112222221
Q ss_pred CcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCC
Q 013204 171 HYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250 (447)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~ 250 (447)
+++++++.+. .+++++|++||+++++|.+.++++|+++|+++|++||+++|+||+|+|+
T Consensus 166 ------------------d~~~le~~l~---~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~ 224 (400)
T PTZ00125 166 ------------------DVEALEKLLQ---DPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGL 224 (400)
T ss_pred ------------------CHHHHHHHhC---CCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 2477888775 2468999999999999999999999999999999999999999999999
Q ss_pred CccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh
Q 013204 251 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE 330 (447)
Q Consensus 251 g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~ 330 (447)
|++|..++.+.+++.||++++||++++|++|+|++++++++++.+.. ..+..+++++|++++++.++|+.+++
T Consensus 225 g~~G~~~~~~~~~~~pd~~~~sK~l~~g~~~ig~v~~~~~~~~~~~~-------~~~~~t~~~~~~~~~aa~~~l~~i~~ 297 (400)
T PTZ00125 225 GRTGKLLAHDHEGVKPDIVLLGKALSGGLYPISAVLANDDVMLVIKP-------GEHGSTYGGNPLACAVAVEALEVLKE 297 (400)
T ss_pred CccchhhHHHhcCCCCCEEEEcccccCCCcCcEEEEEcHHHHhhccC-------CCCCCCCCcCHHHHHHHHHHHHHHHh
Confidence 99998777777889999999999999987799999999999988752 23456888999999999999999887
Q ss_pred hcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CE
Q 013204 331 RNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DN 408 (447)
Q Consensus 331 ~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~ 408 (447)
+++.++++++++++++.|+++ ..++.+..+++.|.++++.+..+.. .....+.+.|+++||++.+.+ +.
T Consensus 298 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~~v~~~~~~~---------~~~~~~~~~l~~~Gv~v~~~~~~~ 368 (400)
T PTZ00125 298 EKLAENAQRLGEVFRDGLKELLKKSPWVKEIRGKGLLNAIVFDHSDG---------VNAWDLCLKLKENGLLAKPTHDNI 368 (400)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccEEEEEEEccCcc---------hHHHHHHHHHHHCCeEEeecCCCE
Confidence 788899999999999999887 5556777788899998888764211 024568889999999998865 67
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 409 IMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 409 iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
+||+|++.+++++|++++++|+++++++.
T Consensus 369 lRi~~~~~~~~~~i~~~l~~l~~~l~~~~ 397 (400)
T PTZ00125 369 IRFAPPLVITKEQLDQALEIIKKVLKSFD 397 (400)
T ss_pred EEEECCccCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999988764
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-52 Score=410.93 Aligned_cols=403 Identities=34% Similarity=0.628 Sum_probs=322.4
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHH
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (447)
+|++++ ...+|+++++++|++++|.||++||||.++++++++||+||+|.+++.+++.+...+... .+.++...
T Consensus 9 ~~~~~~-----~~~~~~~~~~~~g~~~~d~dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-~~~~~~~~ 82 (413)
T cd00610 9 LWHGYT-----VRPYPLVIVRAEGAYLYDVDGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLTHFSLG-FFYNEPAV 82 (413)
T ss_pred cccccc-----CCCCCceEEeeecCEEEeCCCCEEEEcCccHHhhccCCCCHHHHHHHHHHHHhCcCccCc-ccCCHHHH
Confidence 477776 236899999999999999999999999999999999999999999999999765433221 13578899
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP 160 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 160 (447)
++++++++.++ .+.++++|++||++|++.|+++++.+ +++++|++++++|||++...+..++.+.+...+...
T Consensus 83 ~l~~~l~~~~~-~~~~~v~~~~sgsea~~~al~~~~~~------~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 155 (413)
T cd00610 83 ELAELLLALTP-EGLDKVFFVNSGTEAVEAALKLARAY------TGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPL 155 (413)
T ss_pred HHHHHHHHhCC-CCCCEEEEcCcHHHHHHHHHHHHHHH------cCCCeEEEECCCcCCccHHHHHhcCCccccccCCCC
Confidence 99999999973 35789999999999999999998765 456899999999999998888877655444333333
Q ss_pred CCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCE
Q 013204 161 APFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240 (447)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~ 240 (447)
...+..++++.... . ......++++|++.+... ++++++|++||+++++|.+.++++|+++|.++|++||++
T Consensus 156 ~~~~~~~~~~~~~~-----~--~~~~~~d~~~l~~~l~~~-~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~ 227 (413)
T cd00610 156 LPGVLHVPYPYRYR-----P--PAELADDLEALEEALEEH-PEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGIL 227 (413)
T ss_pred CCCcEEeCCCcccc-----c--hhhHHHHHHHHHHHHhcC-CCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCE
Confidence 33333333321110 0 011223457777777642 357899999999999999999999999999999999999
Q ss_pred EEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHH
Q 013204 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAV 320 (447)
Q Consensus 241 li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a 320 (447)
+|+||+|+|+|+.|..++.+.+++.||++++||++++| +|+|++++++++++.+. ...+.+.+|++.+++++++
T Consensus 228 li~Dev~~g~g~~g~~~~~~~~~~~~d~~t~sK~l~~g-~~~g~~~~~~~~~~~~~-----~~~~~~~~t~~~~~~~~~a 301 (413)
T cd00610 228 LIADEVQTGFGRTGKMFAFEHFGVEPDIVTLGKGLGGG-LPLGAVLGREEIMDAFP-----AGPGLHGGTFGGNPLACAA 301 (413)
T ss_pred EEEeccccCCCcCcchhhHhhcCCCCCeEEEcccccCc-cccEEEEEcHHHHHhhc-----cCCCCCCCCCCcCHHHHHH
Confidence 99999999999998877778889999999999999998 89999999999998861 1134566789999999999
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcC
Q 013204 321 AIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHG 399 (447)
Q Consensus 321 a~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 399 (447)
+.++|+.++++++.++++++++++++.|+++ ..++.+..+++.|.++.+.+........ .+......+.+.|+++|
T Consensus 302 ~~a~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~g 378 (413)
T cd00610 302 ALAVLEVLEEEGLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATKP---PDKELAAKIIKAALERG 378 (413)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCcEEEeecCceEEEEEEecCCCcCC---cchHHHHHHHHHHHHCC
Confidence 9999999888888999999999999999987 3346666778889999988875422110 00113556888999999
Q ss_pred ceEEeeC-CEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 400 MLVRVSG-DNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 400 i~~~~~g-~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
|++.+.+ +.+|++|++.+|+++|++++++|++++
T Consensus 379 v~v~~~~~~~lR~~~~~~~t~~~i~~~~~~l~~~l 413 (413)
T cd00610 379 LLLRPSGGNVIRLLPPLIITEEEIDEGLDALDEAL 413 (413)
T ss_pred eEEeecCCCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 9999874 779999999999999999999998764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-51 Score=401.07 Aligned_cols=363 Identities=27% Similarity=0.440 Sum_probs=296.3
Q ss_pred CCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCC
Q 013204 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASK 94 (447)
Q Consensus 15 ~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 94 (447)
.|+++++++|+|+||.||++||||.+++++.+||| ||+|.+++.++++++..... ...++...++++.++.. .
T Consensus 11 ~~~~~~~~~G~~l~d~dg~~~lD~~s~~~~~~lG~-~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~la~~l~~~----~ 83 (375)
T PRK04260 11 AAIEFVKAEGNYLIDTDGKKYLDFSSGIGVTNLGF-HPQVQQALQKQAGLIWHSPN--LYLNSLQEEVAQKLIGD----K 83 (375)
T ss_pred CCceEEEeeeCEEEeCCCCEEEECCCCcccccCCC-CHHHHHHHHHHHHhcCcccC--ccCCHHHHHHHHHHhcC----c
Confidence 57899999999999999999999999999999999 99999999999987543221 22455566666665432 2
Q ss_pred CCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCccc
Q 013204 95 MAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWR 174 (447)
Q Consensus 95 ~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (447)
...++|++||+|||+.|+++++.+ +++++|++++++|||++..++..++.......+......+...++
T Consensus 84 ~~~~~~~~SGseA~~~Al~~ar~~------~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 152 (375)
T PRK04260 84 DYLAFFCNSGAEANEAAIKIARKA------TGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIF----- 152 (375)
T ss_pred CCEEEEcCccHHHHHHHHHHHHHh------cCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCC-----
Confidence 236799999999999999999866 456789999999999998888877654433333321111111111
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccc
Q 013204 175 YAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLG 254 (447)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g 254 (447)
++++++++.+. +++++|++||+++++|.+.++.+||+++.++|++||+++|+||+|+|+|+.|
T Consensus 153 -------------~dl~~l~~~l~----~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g 215 (375)
T PRK04260 153 -------------NDLNSVKALVN----KNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTG 215 (375)
T ss_pred -------------CCHHHHHHhcC----CCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc
Confidence 12466776553 4689999999999999999999999999999999999999999999999998
Q ss_pred cccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHH
Q 013204 255 TMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIV 334 (447)
Q Consensus 255 ~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~ 334 (447)
..+.++.+++.||+++|||++++| +|+|++++++++++.+.. ..+.+|+.++|++++++.++|+.++.+++.
T Consensus 216 ~~~~~~~~~~~pdi~t~sK~l~~G-~~ig~~~~~~~~~~~~~~-------~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~ 287 (375)
T PRK04260 216 KLYAFEHYGIEPDIFTLAKGLANG-VPVGAMLAKSSLGGAFGY-------GSHGSTFGGNKLSMAAASATLDIMLTAGFL 287 (375)
T ss_pred chhhhHhhCCCCCEEEecccccCC-cceEEEEEcHHHHhhcCC-------CCCCCCCCcCHHHHHHHHHHHHHHHhhHHH
Confidence 877777789999999999999988 799999999999888752 235578999999999999999998878889
Q ss_pred HHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEEEe
Q 013204 335 EQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIMMS 412 (447)
Q Consensus 335 ~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR~~ 412 (447)
++++++++++++.+.++ ..++.+..+++.|+++++.+... ...+.++|+++||++.+.+ +.+|++
T Consensus 288 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~-------------~~~~~~~l~~~Gi~v~~~~~~~lR~~ 354 (375)
T PRK04260 288 EQALENGNYLQEQLQKALQDKETVTTVRGLGYMIGIETTAD-------------LSQLVEAARDKGLIVLTAGTNVIRLL 354 (375)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEEeccceEEEEEecCc-------------HHHHHHHHHhCCCEEecCCCCEEEEc
Confidence 99999999999999876 55666678888999999988421 3458899999999998776 679999
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q 013204 413 PPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 413 ~~~~~t~e~i~~~~~~l~~~l 433 (447)
||+.+++++|++++++|++++
T Consensus 355 ~~~~~t~~~i~~~l~~l~~~~ 375 (375)
T PRK04260 355 PPLTLTKEEIEQGIAILSEVF 375 (375)
T ss_pred CCCccCHHHHHHHHHHHHHhC
Confidence 999999999999999998753
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-51 Score=404.13 Aligned_cols=374 Identities=33% Similarity=0.581 Sum_probs=307.4
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
..+|+++++++|+++||.|||+|+||.+++++++|||+||++.+++.+++++..... ...+++...++++++++..
T Consensus 19 ~~~~~~~~~~~G~~~~d~dg~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~la~~l~~~~-- 94 (396)
T PRK02627 19 GRLPIAFVRGEGARLWDDDGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLIHTS--NLYYIEPQEELAEKLVELS-- 94 (396)
T ss_pred cCCCceEEeeeeCEEEeCCCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhccccc--cccCCHHHHHHHHHHHhhc--
Confidence 356899999999999999999999999999999999999999999999998753221 1346788899999999884
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCc
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHY 172 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
+.++++|++||++|++.|+++++.+....+. +++++++++++|||++..++..++.+.+...+......+..++++
T Consensus 95 -~~~~v~~~~gg~eA~~~al~~a~~~~~~~~~-~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 170 (396)
T PRK02627 95 -GMDKVFFCNSGAEANEAAIKLARKYGHKKGI-EKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLVEGFIYVPFN-- 170 (396)
T ss_pred -CCCEEEECCCcHHHHHHHHHHHHHHhcccCC-CCCeEEEECCCcCcccHHHHHhcCCccccccCCCCCCCceEeCCC--
Confidence 5589999999999999999999876422221 237899999999999988888776554433222111111112211
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc
Q 013204 173 WRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252 (447)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~ 252 (447)
+++++++.+. +++++|++||+++++|..+++++++++|.++|++||+++|+||+|+|||+
T Consensus 171 ----------------d~~~l~~~i~----~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~ 230 (396)
T PRK02627 171 ----------------DIEALKAAIT----DKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGR 230 (396)
T ss_pred ----------------CHHHHHHhcC----CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCc
Confidence 1366777663 46899999999999998889999999999999999999999999999999
Q ss_pred cccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhc
Q 013204 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERN 332 (447)
Q Consensus 253 ~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~ 332 (447)
+|..++++.+++.||+++|||++++| +|+|++++++++++.+. ...+..+++.++++++++.++|+.++.++
T Consensus 231 ~g~~~~~~~~~~~pdi~t~sK~~~~G-~rig~~~~~~~~~~~~~-------~~~~~~t~~~~~~~~~aa~~~l~~~~~~~ 302 (396)
T PRK02627 231 TGKLFAYQHYGIEPDIMTLAKGLGGG-VPIGAVLAKEKVADVFT-------PGDHGSTFGGNPLACAAALAVIEIIEEEG 302 (396)
T ss_pred cCceeeehhcCCCCCEEEEcchhhCC-cccEEEEEcHHHHhccC-------CCCCCCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 99877777788999999999999977 89999999999988775 22356788999999999999999887778
Q ss_pred HHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEE
Q 013204 333 IVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIM 410 (447)
Q Consensus 333 ~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR 410 (447)
+.++++++++++++.|+++ ..++.+..+++.|.++++.+.. . ...+.+.|+++||++.+.+ +.+|
T Consensus 303 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~-~------------~~~~~~~l~~~Gv~v~~~~~~~lR 369 (396)
T PRK02627 303 LLENAAEVGEYLRAKLRELLEKYPGIKEVRGLGLMIGIELDR-P------------AAEIVKKALEKGLLINVTGDNVLR 369 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeeeeccCcEEEEEEecC-c------------HHHHHHHHHHCCeEEeecCCCEEE
Confidence 8899999999999999887 5566667788889998888721 1 3468889999999999876 6699
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 411 MSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 411 ~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
++|++.+++++|++++++|++++++
T Consensus 370 i~~~~~~~~~~i~~~~~~l~~~l~~ 394 (396)
T PRK02627 370 LLPPLIISKEEIDEAVDRLEEVLKE 394 (396)
T ss_pred EECCcccCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998865
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-51 Score=406.03 Aligned_cols=377 Identities=22% Similarity=0.359 Sum_probs=289.1
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
..|+++++++|+++||.|||+||||.+++|+.+|||+||+|.+|+.++++++.. +..++....++++++++.++
T Consensus 29 ~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~----~~~~~~~~~~la~~l~~~~p-- 102 (431)
T PRK06209 29 LAPGFIQRGSGAHVWDVDGNEYIEYGMGLRAVGLGHAYPPVVEAVREALQDGCN----FTRPSAIELDAAESFLELID-- 102 (431)
T ss_pred CCCeEEEeccCCEEEeCCCCEEEEccccccchhcCCCCHHHHHHHHHHHHhCcC----CCCCCHHHHHHHHHHHHhCC--
Confidence 568999999999999999999999999999999999999999999999988642 23356666789999999874
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEE-cCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCc
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIAR-QKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHY 172 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~-~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
..++++|++||+||++.|||++|.+ +++.+|+.+ .++|||........+ + ... +.+... ....
T Consensus 103 ~~~~v~f~~sGseA~e~AlklAr~~------tgr~~i~~~~~~~~h~~~~~~~g~~--~-~~~--~~~~~~-~~~~---- 166 (431)
T PRK06209 103 GADMVKFCKNGSDATSAAVRLARAY------TGRDLVARCADHPFFSTDDWFIGTT--P-MSA--GIPASV-SALT---- 166 (431)
T ss_pred ccceEEEecCHHHHHHHHHHHHHHH------hCCCeEEEeccCccccccccccccC--C-CCC--CCChhH-hccc----
Confidence 3469999999999999999999988 456788888 678877421110000 0 000 000000 0000
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc
Q 013204 173 WRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252 (447)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~ 252 (447)
..+.+++++++++++.. .++++++||+||++++ .|+.+||++|+++|++||++||+|||++|+++
T Consensus 167 ----------~~~~~~d~~~l~~~l~~-~~~~~aavi~Epv~g~----~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~ 231 (431)
T PRK06209 167 ----------VTFRYNDIASLEALFED-HPGRIACVILEPATAD----EPQDGFLHEVRRLCHENGALFILDEMITGFRW 231 (431)
T ss_pred ----------cccCCCCHHHHHHHHHh-CCCCEEEEEEccccCC----CCCHHHHHHHHHHHHHcCCEEEEEcccccCCc
Confidence 01122235788888864 3468999999999876 77899999999999999999999999999976
Q ss_pred cccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHH--hhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh
Q 013204 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEV--IHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE 330 (447)
Q Consensus 253 ~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~ 330 (447)
.+ .++.+++++.||++++||+++|| +|+|++++++++++. +... ...+.+.+++|+++||++|++++++|+++++
T Consensus 232 ~~-~g~~~~~gv~PDi~t~gK~lggG-~p~~av~~~~~i~~~~~~~~~-~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~ 308 (431)
T PRK06209 232 HM-RGAQKLYGIVPDLSCFGKALGNG-FAVSALAGKREYMELGGLEHT-DRERVFLLSTTHGAETHALAAAIATMAIYRD 308 (431)
T ss_pred Cc-chhhHHhCCCcceeeehhhhcCC-cccEEEEEHHHHHhhhccccc-CCCCceeeccCCCCCHHHHHHHHHHHHHHhc
Confidence 42 23344689999999999999999 799999999999887 3211 1123556788999999999999999999998
Q ss_pred hcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeCCEE
Q 013204 331 RNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNI 409 (447)
Q Consensus 331 ~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g~~i 409 (447)
+++.++++++++++++.|+++ .++++...+++.|.+..+.+........+ .......+.+.|+++|+++.+ +
T Consensus 309 ~~~~~~~~~~g~~l~~~L~~~~~~~~~~~~vr~~G~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~Gi~~p~----l 381 (431)
T PRK06209 309 EDVIERLHEQGAKLAAGVNEAAAEHGLQDHVRVSGRPCCLTYSTLDGNGQP---SQAFRTLFLQETIRRGVLMPS----L 381 (431)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeecceEEEEEecCCcccCC---cHHHHHHHHHHHHHCCccccc----c
Confidence 899999999999999999887 56788878888888877776532111110 111234577889999998732 4
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013204 410 MMSPPFIMSPEEVDELISKYGKALKATEER 439 (447)
Q Consensus 410 R~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 439 (447)
+++ ..||++||++++++|++++.++++.
T Consensus 382 ~is--~~ht~~dId~~l~~l~~~l~~~~~~ 409 (431)
T PRK06209 382 VVS--YAHGDADIERTIDAVHGALGVYRKA 409 (431)
T ss_pred ccc--ccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 555 6889999999999999999988554
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-46 Score=364.94 Aligned_cols=371 Identities=36% Similarity=0.608 Sum_probs=293.7
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
.++|+++++++|++++|.||++||||.+++++++|||+||.+.+++.+++.+...... ..+++...++++++++.+
T Consensus 7 ~~~~~~~~~~~g~~~~~~~g~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~la~~~-- 82 (379)
T TIGR00707 7 GRLPVKIVRGKGAYVYDVNGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVHVSN--LYYTEPQEELAEKLVEHS-- 82 (379)
T ss_pred CCCCccEEEeecCEEEeCCCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhcccccc--ccCCHHHHHHHHHHHhhC--
Confidence 4689999999999999999999999999999999999999999999999987533211 236778999999999997
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCc
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHY 172 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
+.+++++++||++|++.|+++++.+....+ +++++|++++++|||+...+...++...+.............+++
T Consensus 83 -g~~~~~~~~sg~~a~~~a~~~~~~~~~~~~-~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 157 (379)
T TIGR00707 83 -GADRVFFCNSGAEANEAALKLARKYTGDKG-KEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPY--- 157 (379)
T ss_pred -CCCEEEEeCCcHHHHHHHHHHHHHHhhccC-CCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCC---
Confidence 456999999999999999998865432111 235889999999999988877766544322111111111111111
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc
Q 013204 173 WRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252 (447)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~ 252 (447)
++++++++.+. +.+++|+++|+++++|..+++.+++++|.++|++||+++|+||+|++||+
T Consensus 158 ---------------~d~~~l~~~~~----~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~ 218 (379)
T TIGR00707 158 ---------------NDIESLKKAID----DETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGR 218 (379)
T ss_pred ---------------CCHHHHHHHhh----hCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 12467777664 25678899999999998888999999999999999999999999999998
Q ss_pred cccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhc
Q 013204 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERN 332 (447)
Q Consensus 253 ~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~ 332 (447)
.|..+.+...++.||+++|||++++| +|+|++++++++++.+.. ..+..+++.++++++++.++|+.++..+
T Consensus 219 ~g~~~~~~~~~~~~d~~t~sK~~~~G-~riG~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~aa~aaL~~~~~~~ 290 (379)
T TIGR00707 219 TGKFFAYEHYGIEPDIITLAKGLGGG-VPIGATLAKEEVAEAFTP-------GDHGSTFGGNPLACAAALAVLEVIEKER 290 (379)
T ss_pred cchhhhHHhcCCCCCEEEEcccccCC-cccEEEEEcHHHHhhhcC-------CCCCCCCCCCHHHHHHHHHHHHHHHhhh
Confidence 88655555668889999999999976 899999999999988852 2344577889999999999999887777
Q ss_pred HHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEE
Q 013204 333 IVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIM 410 (447)
Q Consensus 333 ~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR 410 (447)
+.++++++++++++.|+++ ..... ..+++.|.++.+.+..+ ...+.+.|+++||++.+.+ +.+|
T Consensus 291 ~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~g~~~~~~~~~~-------------~~~~~~~l~~~Gv~v~~~~~~~lR 356 (379)
T TIGR00707 291 LLENVKEKGDYFKERLEELGKNYPN-KEVRGKGLMLGIELEAP-------------CKDIVKKALEKGLLVNCAGPKVLR 356 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCC-CccccCceEEEEEecCc-------------HHHHHHHHHHCCcEEeeCCCCEEE
Confidence 8899999999999999876 33332 34456788877776532 2457888999999999876 6799
Q ss_pred EecCCCCCHHHHHHHHHHHHHHH
Q 013204 411 MSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 411 ~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
++|++.++++++++++++|++++
T Consensus 357 i~~~~~~t~~~i~~~~~~l~~~~ 379 (379)
T TIGR00707 357 FLPPLIITKEEIDEAVSALEEAI 379 (379)
T ss_pred EECCCcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999998753
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=339.56 Aligned_cols=392 Identities=23% Similarity=0.362 Sum_probs=303.4
Q ss_pred CCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHH--hcCCcccccCcCCChHHHHHH-HHHHHhcC
Q 013204 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQL--NTLPFYHSFWNRTTKPSLDLA-KELLEMFT 91 (447)
Q Consensus 15 ~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~--~~~~~~~~~~~~~~~~~~~l~-~~l~~~~~ 91 (447)
|+.-+.++-|+|++|.|||.+||..+.+.+.++||+||.++.++++.- ..+......-.+|.+...+.. +.+.+. .
T Consensus 58 F~~dYEkS~GNYlvDvDGN~lLDvYsQIsSvplGYn~P~LvK~a~~p~~~~~lvnRPALg~fP~kd~~~~l~~~ll~~-A 136 (484)
T KOG1405|consen 58 FFVDYEKSIGNYLVDVDGNRLLDVYSQISSVPLGYNNPALVKAAQQPQNATMLVNRPALGNFPPKDFAEKLRQSLLSI-A 136 (484)
T ss_pred EehhhhhhcCceEEecCCCeeehhhhhhcccccCCCCHHHHHHhcChHHHHHHhccccccCCChhhHHHHHHHHHHhh-C
Confidence 455577899999999999999999999999999999999998866532 111111111123433333322 223333 3
Q ss_pred cCCCCeEEEeCChhhHHHHHHHHHHHH--HHhcCC------------------CCcceEEEEcCCCccchhhhhcccCCc
Q 013204 92 ASKMAKVFFTNSGSEANDTQVKLVWYY--NNALGR------------------PNKKKFIARQKSYHGSTLIAASLSGLP 151 (447)
Q Consensus 92 ~~~~~~v~~~~sGseA~~~Al~~~~~~--~~~~~~------------------~~~~~vi~~~~~yhg~~~~~~~~~~~~ 151 (447)
+-+.+.|.+..+|+.|||+|+|.++.+ +..+|. .+.-.|+.|.++|||++++.++.+.+.
T Consensus 137 PKG~~~v~tm~cGs~aNEnA~K~afiwy~~k~rg~~~~s~~e~eScm~n~aPg~P~lsvlsF~gaFHGR~~g~lstT~SK 216 (484)
T KOG1405|consen 137 PKGQKQVITMLCGSCANENAYKTAFIWYRAKERGQAGFSAEELESCMINQAPGAPDLSVLSFKGAFHGRTFGSLSTTHSK 216 (484)
T ss_pred cchHHHHHHHhccccccHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHhcCCCCCCceeeeeeccccccccccccccccCc
Confidence 557778999999999999999976533 233332 124589999999999999999988776
Q ss_pred cccCCCCCCCCcceecCCCCcccCCCCCCCh----hHHHHHHHHHHHHHHHhhC--CCcEEEEEEccccCCCCCccCChh
Q 013204 152 ALHQKFDLPAPFVLHTDCPHYWRYAHPGETE----EEYSTRLANNLEDLILKEG--PETIAAFIAEPVIGAGGVIPPPAT 225 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~le~~l~~~~--~~~~a~vi~epv~~~~G~~~~~~~ 225 (447)
..++ +++|...+...++|.+ .+|.+.. ..-...|++++|+++.+.. ...++++|+||+|++||....+++
T Consensus 217 pIHK-ldiPaFdWPiA~fP~y---kYPLdenv~~N~ked~~Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~ 292 (484)
T KOG1405|consen 217 PIHK-LDIPAFDWPIAPFPRY---KYPLDENVAENKKEDQGCLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPD 292 (484)
T ss_pred cccc-cCCCCCCCCCCCCccc---cCChhhhhhhhhhhhhhHHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHH
Confidence 5543 4555555566666642 3333211 1234567899999998743 347999999999999999999999
Q ss_pred HHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCC--CCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCC
Q 013204 226 YFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSI--KPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLG 303 (447)
Q Consensus 226 ~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~--~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~ 303 (447)
|++.|+++|++||+.+|+||||||.|.+|+.|++++|++ .||+|||||.|-.|+ ..-.++++ +..
T Consensus 293 Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~PpD~vTFSKK~q~gG-----ffh~~~fr--------pn~ 359 (484)
T KOG1405|consen 293 FFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSPPDVVTFSKKFQTGG-----FFHDEEFR--------PNE 359 (484)
T ss_pred HHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCCccceehhhhhhcCc-----cccCcccC--------CCc
Confidence 999999999999999999999999999999999999998 489999999765432 22223321 112
Q ss_pred ccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc-cCCC-ceeeEeeeeeEEEEEeecCCCCCCCC
Q 013204 304 SFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSP-IIGEIRGTGLILGTEFADNKSPNEPF 381 (447)
Q Consensus 304 ~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~ 381 (447)
++.+..||.+.|.-+.-..+++++++++++.+++...++.|..+|.+| .++| .+..++|.|.+.++++++..
T Consensus 360 pYrifNTWmGdP~k~lll~~vv~~I~~~~Ll~n~~~vG~~l~~gL~~Lq~~~p~~~~~~RGrGTF~a~d~ps~~------ 433 (484)
T KOG1405|consen 360 PYRIFNTWMGDPSKNLLLEEVVQEIKREDLLNNVAHVGKALLKGLLELQAKYPGKINNLRGRGTFIAWDCPSGS------ 433 (484)
T ss_pred hHHHhhhhcCChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhcccccceEEEEeCCChH------
Confidence 455667999999988888889999999999999999999999999999 6676 67788999999999988754
Q ss_pred CCCcchHHHHHHHHHHcCceEEeeCC-EEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 382 PPEWGIGAYFGAQCEKHGMLVRVSGD-NIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 382 ~~~~~~~~~~~~~l~~~Gi~~~~~g~-~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
....++..+.-+|+.+..||. .|||.|++..++.+.+-++++|.+.++.
T Consensus 434 -----~Rdk~i~~~~~nGv~~GGCg~~siRfRPsLvf~~~Ha~i~l~~~~k~l~~ 483 (484)
T KOG1405|consen 434 -----IRDKLILIARLNGVNLGGCGDKSIRFRPSLVFRKHHADIFLDIFDKILAG 483 (484)
T ss_pred -----HHHHHHHHHHHcCceecccccceeeeccceeehhhhHHHHHHHHHHHhcc
Confidence 345688888999999999985 4999999999999999999999998864
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=296.16 Aligned_cols=352 Identities=18% Similarity=0.228 Sum_probs=240.1
Q ss_pred CCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCC-CCCHHHHHHHHHHHhcCC---cccccCcCCChHHHHHHHHHH
Q 013204 12 TDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALG-GSEPRLVAAATAQLNTLP---FYHSFWNRTTKPSLDLAKELL 87 (447)
Q Consensus 12 ~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~ 87 (447)
+.+.++++.+++|+++||.||++||||+++ +++| |+||+|++|+.+++++.. ..++.....++...+++++++
T Consensus 25 ~~~~~~~~~~~~G~~~~d~~g~~~ld~~s~---~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la 101 (402)
T PRK07505 25 EGLNGLTVGEREGILITLADGHTFVNFVSC---SYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALS 101 (402)
T ss_pred cccccceeeccCCccEEecCCceEEEeecC---CccCCCCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHH
Confidence 355678899999999999999999999884 6888 999999999999998743 111111235778899999999
Q ss_pred HhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceec
Q 013204 88 EMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHT 167 (447)
Q Consensus 88 ~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (447)
+.++ . ++++++||++|++.+++++..... .+++.++|+++++|||+...... .... ...+..+
T Consensus 102 ~~~~---~-~~~~~~sG~~a~~~ai~~~~~~~~---~~~~~~vi~~~~~~H~s~~~~~~------~~~~----~~~v~~~ 164 (402)
T PRK07505 102 ELFG---A-SVLTFTSCSAAHLGILPLLASGHL---TGGVPPHMVFDKNAHASLNILKG------ICAD----ETEVETI 164 (402)
T ss_pred HHhC---C-CEEEECChHHHHHHHHHHHHhccc---CCCCCCEEEEchhhhHhHHhhhh------hhhc----CCeEEEe
Confidence 9863 2 677888999999999998753211 12456788999999996422110 0000 0112223
Q ss_pred CCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhh
Q 013204 168 DCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVI 247 (447)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~ 247 (447)
++++ ++++++.+. +++.+++++||++++|+ +.+ +++|.++|++||++||+||+|
T Consensus 165 ~~~d------------------~~~l~~~~~---~~~~~~vl~~p~~~~G~-~~~----~~~i~~l~~~~~~~li~DEa~ 218 (402)
T PRK07505 165 DHND------------------LDALEDICK---TNKTVAYVADGVYSMGG-IAP----VKELLRLQEKYGLFLYIDDAH 218 (402)
T ss_pred CCCC------------------HHHHHHHHh---cCCCEEEEEecccccCC-cCC----HHHHHHHHHHcCCEEEEECcc
Confidence 3221 367777664 24578999999998865 444 899999999999999999998
Q ss_pred --cCCCccccccccccCCC-CCCee----eecccCCCcccceeEEE-eChhHHHHhhhccCCCCccCcCCCCC--CcHHH
Q 013204 248 --CAFGRLGTMFGCDKYSI-KPDLV----SFAKALSSAYMPIGAIL-VSPEVSEVIHSQSNTLGSFSHGFTYS--GHPVS 317 (447)
Q Consensus 248 --~g~g~~g~~~~~~~~~~-~~d~v----~~sK~l~gg~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~t~~--~~~~~ 317 (447)
+++|++|..++.+.++. .||.+ ++||++++++ |+++ .++++++.+.. +.+..+++ .++++
T Consensus 219 ~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~G---g~~~~~~~~~~~~~~~-------~~~~~t~~~~~~~~a 288 (402)
T PRK07505 219 GLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGASG---GVIMLGDAEQIELILR-------YAGPLAFSQSLNVAA 288 (402)
T ss_pred cccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhccC---eEEEeCCHHHHHHHHH-------hCCCceeCCCCCHHH
Confidence 56788887666677776 67744 6899988642 5665 47788888763 23334554 45689
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEE-EEEeecCCCCCCCCCCCcchHHHHHHHHH
Q 013204 318 CAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLIL-GTEFADNKSPNEPFPPEWGIGAYFGAQCE 396 (447)
Q Consensus 318 ~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 396 (447)
+++++++++.+.++.+.+....+.+.++ .+..+ ....+++.+.++ .+.+.... ....+.+.|+
T Consensus 289 ~aa~~a~l~~~~~~~~~~~~~~l~~~~~-~~~~~----~~~~~~g~~~~i~~~~~~~~~-----------~~~~~~~~l~ 352 (402)
T PRK07505 289 LGAILASAEIHLSEELDQLQQKLQNNIA-LFDSL----IPTEQSGSFLPIRLIYIGDED-----------TAIKAAKQLL 352 (402)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHH-HHHHH----HHhcCCCCCCCEEEEEeCCHH-----------HHHHHHHHHH
Confidence 9999999987655444332222222211 12111 001123333332 22222110 2456888999
Q ss_pred HcCceEEee-------C-CEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 397 KHGMLVRVS-------G-DNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 397 ~~Gi~~~~~-------g-~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
++||++.+. + +.+||+|++.+|++++++++++|++++++
T Consensus 353 ~~Gi~v~~~~~p~~~~~~~~lRi~~~~~~t~eei~~~~~~l~~~l~~ 399 (402)
T PRK07505 353 DRGFYTSPVFFPVVAKGRAGLRIMFRASHTNDEIKRLCSLLKEILDE 399 (402)
T ss_pred HCCCeEeeecCCCCCCCCceEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence 999999864 2 57999999999999999999999988753
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=293.73 Aligned_cols=355 Identities=15% Similarity=0.208 Sum_probs=256.1
Q ss_pred CeEEEEecCcEEEeCCCCEEEecCCccccccCCC-CCHHHHHHHHHHHhcCCccc---ccCcCCChHHHHHHHHHHHhcC
Q 013204 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLPFYH---SFWNRTTKPSLDLAKELLEMFT 91 (447)
Q Consensus 16 ~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~ 91 (447)
.+++.+++|++++ .||++|+||+++. ++|. +||++.+++.+++++++.++ +.+.++.+...++++++++++.
T Consensus 93 ~~~~~~~~G~~i~-~~G~~~id~~s~~---~lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~ 168 (481)
T PLN02822 93 PPVLESAAGPHTI-INGKDVVNFASAN---YLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLG 168 (481)
T ss_pred CCceecCCCCeEE-ECCceEEEeECCC---cCCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhC
Confidence 3478899999999 8999999998874 3443 69999999999998854432 2345688999999999999984
Q ss_pred cCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC
Q 013204 92 ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH 171 (447)
Q Consensus 92 ~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
..+.++|++ |..++..+++.. .++..+|++++.||++...++.+++.... ..+.
T Consensus 169 --~~~~i~~s~-G~~a~~sai~a~---------~~~gd~Ii~d~~~H~s~~~~~~ls~~~~~------------~~~~-- 222 (481)
T PLN02822 169 --TPDSILYSY-GLSTIFSVIPAF---------CKKGDIIVADEGVHWGIQNGLYLSRSTIV------------YFKH-- 222 (481)
T ss_pred --CCCEEEECC-HHHHHHHHHHHh---------CCCCCEEEEeCCccHHHHHHHHHcCCeEE------------EECC--
Confidence 345677665 455788888855 33456777899999987666655543211 1111
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHhh------CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEeh
Q 013204 172 YWRYAHPGETEEEYSTRLANNLEDLILKE------GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADE 245 (447)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~le~~l~~~------~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DE 245 (447)
.+ .++++..+... .++..++|++|++++++|.+.+ |++|+++|++||++||+||
T Consensus 223 --------nd--------~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~----L~~i~~l~~k~~~~LIvDE 282 (481)
T PLN02822 223 --------ND--------MESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAP----LDEIVRLKEKYRFRVLLDE 282 (481)
T ss_pred --------CC--------HHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccC----HHHHHHHHHHcCCEEEEEC
Confidence 11 13344433321 1223489999999999999888 9999999999999999999
Q ss_pred hhc--CCCccccccccccCCC---CCCeee--ecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCc--HH
Q 013204 246 VIC--AFGRLGTMFGCDKYSI---KPDLVS--FAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGH--PV 316 (447)
Q Consensus 246 v~~--g~g~~g~~~~~~~~~~---~~d~v~--~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~ 316 (447)
+|+ .+|++|.+ ..+++++ .+|+++ |||+++..+ |++++++++++.+.. ..++.+|+++ |.
T Consensus 283 a~s~gvlG~~G~G-~~e~~~v~~~~~dii~~s~sKalg~~G---G~i~g~~~ii~~~~~-------~~~~~~fsa~lPp~ 351 (481)
T PLN02822 283 SNSFGVLGKSGRG-LSEHFGVPIEKIDIITAAMGHALATEG---GFCTGSARVVDHQRL-------SSSGYVFSASLPPY 351 (481)
T ss_pred CccccccCCCCCC-hHHHcCCCCCCCeEEEecchhhhhhCC---eEEEcCHHHHHHHHh-------cCCceeeccccCHH
Confidence 998 33555544 5678887 688887 779997322 678999999998762 2344566655 78
Q ss_pred HHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHH
Q 013204 317 SCAVAIEALKIYKE-RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQC 395 (447)
Q Consensus 317 ~~~aa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l 395 (447)
.+++++++|+.++. ++..++++++++++++.|+++.+..+ ...+.+.++.+.+.+... ....+......+.++|
T Consensus 352 ~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~--~~~~~spi~~l~l~~~~~---~~~~~~~~~~~~~~~L 426 (481)
T PLN02822 352 LASAAITAIDVLEDNPSVLAKLKENIALLHKGLSDIPGLSI--GSNTLSPIVFLHLEKSTG---SAKEDLSLLEHIADRM 426 (481)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCccc--CCCCCCCEEEEEeCCCcc---cccchHHHHHHHHHHH
Confidence 88889899988765 66889999999999999987632222 223445666677643211 1111112345688888
Q ss_pred H-HcCceEEeeC----------CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 396 E-KHGMLVRVSG----------DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 396 ~-~~Gi~~~~~g----------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+ ++||++.+.. ..+|++.+..+|+++|++++++|++++.++
T Consensus 427 l~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~~l~~~~~~~ 478 (481)
T PLN02822 427 LKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASESLKRVAASV 478 (481)
T ss_pred HhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 7 8899999651 359999889999999999999999998775
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-34 Score=278.94 Aligned_cols=335 Identities=17% Similarity=0.167 Sum_probs=243.5
Q ss_pred CCCEEEecCCccccccCCC-CCHHHHHHHHHHHhcCCcc---cccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhh
Q 013204 31 NGKKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLPFY---HSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSE 106 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGse 106 (447)
+|+++++|+++ ++||. +||+|++++.++++++... ++...+.++...+++++++++++ .+++++++||++
T Consensus 43 ~~~~~~~~~sn---~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g---~~~~~~~~SG~~ 116 (406)
T PRK13393 43 GPREVTVWCSN---DYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHG---KEAALLFTSGYV 116 (406)
T ss_pred CCccEEEeecc---cccCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhC---CCcEEEeCCcHH
Confidence 46899999988 77887 7999999999999876442 22223456678999999999973 468999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHH
Q 013204 107 ANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYS 186 (447)
Q Consensus 107 A~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (447)
||+.|++.+.. ..+..+|+++..||+++..++...+... ...+..
T Consensus 117 An~~ai~~l~~-------~~~g~~I~~~~~~H~s~~~~~~~~g~~~------------~~~~~~---------------- 161 (406)
T PRK13393 117 SNWAALSTLGS-------RLPGCVILSDELNHASMIEGIRHSRAEK------------RIFRHN---------------- 161 (406)
T ss_pred HHHHHHHHhhc-------CCCCCEEEEccchhHHHHHHHHHcCCeE------------EEeCCC----------------
Confidence 99999995421 1124588889999999877765443221 011111
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-CC-CccccccccccCCC
Q 013204 187 TRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-AF-GRLGTMFGCDKYSI 264 (447)
Q Consensus 187 ~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-g~-g~~g~~~~~~~~~~ 264 (447)
+.+++++.+....++.+++|++|++++++|.+.| +++|.++|++||+++|+||+|+ |+ |+.|..+ .++.++
T Consensus 162 --d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~-~~~~~~ 234 (406)
T PRK13393 162 --DPADLERKLSDLDPHRPKLVAFESVYSMDGDIAP----IAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGI-AEREGL 234 (406)
T ss_pred --CHHHHHHHHHhccCCCCEEEEEcCCCCCCCchhC----HHHHHHHHHHcCCEEEEECCccccccCCCCCch-hhhcCC
Confidence 1366777765543346789999999999999888 9999999999999999999997 65 6666544 355565
Q ss_pred C--CCee--eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhc-HHHHHHH
Q 013204 265 K--PDLV--SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERN-IVEQVNK 339 (447)
Q Consensus 265 ~--~d~v--~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~-~~~~~~~ 339 (447)
. +|++ +|||+++.. .|++++++++++.+.... .. ...+.+.+|.+++++.++|+.+++.. ..+++++
T Consensus 235 ~~~~~i~~~tlsKa~g~~---GG~~~~~~~~~~~l~~~~---~~--~~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~ 306 (406)
T PRK13393 235 ADRLTIIEGTLAKAFGVM---GGYITGSAALCDFIRSFA---SG--FIFTTSLPPAVAAGALASVRHLKASSAERERHQD 306 (406)
T ss_pred CCCCeEEEEeCchhhccc---CceeeCCHHHHHHHHHhC---cC--ceecCccCHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 4 5776 899999852 267888999888876321 11 11356678888999999999875432 3355667
Q ss_pred HHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHH-cCceEEee-------C-CEEE
Q 013204 340 IAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEK-HGMLVRVS-------G-DNIM 410 (447)
Q Consensus 340 ~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~-------g-~~iR 410 (447)
+++++++.|+++ +.+. +++.+.++.+.+.+.. ....+.++|++ +||++.+. + +.+|
T Consensus 307 ~~~~l~~~L~~~-g~~~---~~~~~~i~~v~~~~~~-----------~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iR 371 (406)
T PRK13393 307 RVARLRARLDKA-GIPH---LPNPSHIVPVMVGDPV-----------LCKQISDELLDRYGIYVQPINYPTVPRGTERLR 371 (406)
T ss_pred HHHHHHHHHHHc-CCCc---CCCCCCeEEEEeCCHH-----------HHHHHHHHHHHhCCEEEEeECCCCCCCCCceEE
Confidence 888899988775 3332 2456777666543211 24557888887 59998753 2 5799
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 411 MSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 411 ~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
++|++.+|++||++++++|++.+.++
T Consensus 372 is~~~~~t~edid~l~~~l~~~~~~~ 397 (406)
T PRK13393 372 ITPSPLHTDADIEHLVQALSEIWARL 397 (406)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999987653
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=264.17 Aligned_cols=339 Identities=21% Similarity=0.311 Sum_probs=259.4
Q ss_pred EEecCcEEEeCCCCEEEecCCccccccCCC-CCHHHHHHHHHHHhcCCc---ccccCcCCChHHHHHHHHHHHhcCcCCC
Q 013204 20 EKSEGSYVYDVNGKKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLPF---YHSFWNRTTKPSLDLAKELLEMFTASKM 95 (447)
Q Consensus 20 ~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 95 (447)
.+..+.++. .+|++++||+|+ ++||. +||++++++.+++++.+. .++...++.+.+.+|++++++++ +.
T Consensus 27 ~~~~~~~~~-~~~~~~~nf~SN---dYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~---g~ 99 (388)
T COG0156 27 DRRQGLAIR-ADGRKVLNFCSN---DYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFL---GA 99 (388)
T ss_pred cccCCccee-cCCceeEeeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHh---CC
Confidence 333455554 679999999988 67775 799999999999988433 34456789999999999999997 67
Q ss_pred CeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccC
Q 013204 96 AKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRY 175 (447)
Q Consensus 96 ~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (447)
+++++++||..||..++... .+++.+|+.+--.|.+...+..+++...+
T Consensus 100 e~al~f~SGy~AN~~~i~~l---------~~~~dli~~D~lnHASiidG~rls~a~~~---------------------- 148 (388)
T COG0156 100 EAALLFSSGFVANLGLLSAL---------LKKGDLIFSDELNHASIIDGIRLSRAEVR---------------------- 148 (388)
T ss_pred CcEEEEcccchhHHHHHHHh---------cCCCcEEEEechhhhhHHHHHHhCCCcEE----------------------
Confidence 78999999999999999977 34578888888999997777766654322
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhCCC--cEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcc
Q 013204 176 AHPGETEEEYSTRLANNLEDLILKEGPE--TIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRL 253 (447)
Q Consensus 176 ~~~~~~~~~~~~~~~~~le~~l~~~~~~--~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~ 253 (447)
.|.|+++++||+++...... +...|++|.|++|.|.+.| |++|+++|++|+++|++||+|+ +|..
T Consensus 149 --------~f~HnD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiAp----L~~l~~L~~ky~a~L~VDEAHa-~Gv~ 215 (388)
T COG0156 149 --------RFKHNDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAP----LPELVELAEKYGALLYVDEAHA-VGVL 215 (388)
T ss_pred --------EecCCCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCC----HHHHHHHHHHhCcEEEEEcccc-cccc
Confidence 13445579999999763211 4679999999999999999 9999999999999999999997 7677
Q ss_pred cc--ccccccCCCCCC---ee--eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHH
Q 013204 254 GT--MFGCDKYSIKPD---LV--SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALK 326 (447)
Q Consensus 254 g~--~~~~~~~~~~~d---~v--~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~ 326 (447)
|. .+..+++|+.++ ++ ||||++|+.+ |++.+++.+.+.+... .+++ .++.+.+|..++++.++|+
T Consensus 216 G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~G---g~v~g~~~~~d~L~~~---ar~~--ifStalpP~~aaa~~~al~ 287 (388)
T COG0156 216 GPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSG---GYIAGSAALIDYLRNR---ARPF--IFSTALPPAVAAAALAALR 287 (388)
T ss_pred CCCCccHHHHhCCCCccceEEEEEchhhhcccC---ceeeCcHHHHHHHHHh---CCce--eccCCCCHHHHHHHHHHHH
Confidence 75 334577787643 33 7999999643 7899999999998753 2233 3466677888888999999
Q ss_pred HHhh-hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee
Q 013204 327 IYKE-RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS 405 (447)
Q Consensus 327 ~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~ 405 (447)
.+++ ++.+++++++..+++..++.. .+.. ......+..+.+.++. .+..+...|+++||++.+.
T Consensus 288 ~l~~~~~~r~~L~~~~~~~~~~~~~~-~~~~---~~s~s~I~pv~~gd~~-----------~a~~~s~~l~~~Gi~v~~i 352 (388)
T COG0156 288 ILEEGPERRERLQELAAFFRSLLKAL-GLVL---LPSESPIIPVILGDEE-----------RALEASRALLEEGIYVSAI 352 (388)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHhc-CCcc---CCCCCCeeeeEeCCHH-----------HHHHHHHHHHHCCeeEeee
Confidence 8875 567889999999998666553 1111 1222334445555432 3566888999999998854
Q ss_pred -------C-CEEEEecCCCCCHHHHHHHHHHHHHH
Q 013204 406 -------G-DNIMMSPPFIMSPEEVDELISKYGKA 432 (447)
Q Consensus 406 -------g-~~iR~~~~~~~t~e~i~~~~~~l~~~ 432 (447)
| .++|++++..+|+++|+++++.|.++
T Consensus 353 ~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 353 RPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred cCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence 2 56999999999999999999998864
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=269.80 Aligned_cols=336 Identities=20% Similarity=0.234 Sum_probs=240.7
Q ss_pred CCCCEEEecCCccccccCCC-CCHHHHHHHHHHHhcCCccc---ccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChh
Q 013204 30 VNGKKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLPFYH---SFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGS 105 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGs 105 (447)
.+|+++++|+|+ ++||. +||+|++|+.+++++....+ +...+.++...+|++++++.+. .+++++++||+
T Consensus 42 ~~~~~~~~~~sn---~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g---~~~~l~~~sG~ 115 (402)
T TIGR01821 42 DGAKDVTVWCSN---DYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHG---KESALVFTSGY 115 (402)
T ss_pred CCCeeEEEeEcc---CcCCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhC---CCeEEEECchH
Confidence 346999999887 55664 79999999999998855432 2233567788999999999973 35789999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHH
Q 013204 106 EANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEY 185 (447)
Q Consensus 106 eA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (447)
+||+.+++++... .+..+++.+..||++....+...+.+.. ..+.+
T Consensus 116 ~an~~ai~~l~~~-------~~~~~v~~~~~~h~s~~~~~~~~g~~~~------------~~~~~--------------- 161 (402)
T TIGR01821 116 VANDATLATLAKI-------IPGCVIFSDELNHASMIEGIRHSGAEKF------------IFRHN--------------- 161 (402)
T ss_pred HHHHHHHHHhhCC-------CCCCEEEEcchHhHHHHHHHHHcCCeEE------------EECCC---------------
Confidence 9999999987421 1245677777899987666654443211 01111
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-CC-CccccccccccCC
Q 013204 186 STRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-AF-GRLGTMFGCDKYS 263 (447)
Q Consensus 186 ~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-g~-g~~g~~~~~~~~~ 263 (447)
+.+++++++....++.+++|++|++++++|.+.| +++|.++|++||++||+||+|+ |+ |..|.. ..+..+
T Consensus 162 ---d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~G~~g~~g~g-~~~~~~ 233 (402)
T TIGR01821 162 ---DVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIAP----IEEICDLADKYGALTYLDEVHAVGLYGPRGGG-IAERDG 233 (402)
T ss_pred ---CHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEeCcccccccCCCCCc-cchhcc
Confidence 1367777776543446789999999999998887 9999999999999999999998 32 333332 234555
Q ss_pred C--CCCee--eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh-cHHHHHH
Q 013204 264 I--KPDLV--SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER-NIVEQVN 338 (447)
Q Consensus 264 ~--~~d~v--~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~-~~~~~~~ 338 (447)
+ .+|++ +|||++++. .|++++++++++.+..... . ..++.+.+|+++++++++|+.+++. .+.++..
T Consensus 234 ~~~~~div~~t~sKa~g~~---GG~i~~~~~~~~~l~~~~~---~--~~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~ 305 (402)
T TIGR01821 234 LMHRIDIIEGTLAKAFGVV---GGYIAASRKLIDAIRSYAP---G--FIFTTSLPPAIAAGATASIRHLKESQDLRRAHQ 305 (402)
T ss_pred CCCCCeEEEEechhhhccC---CceeecCHHHHHHHHHhCc---C--ceecCcCCHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 4 46877 899999852 2678889999888863211 1 1235567899999999999987654 3456667
Q ss_pred HHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHH-cCceEEee-------C-CEE
Q 013204 339 KIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEK-HGMLVRVS-------G-DNI 409 (447)
Q Consensus 339 ~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~-------g-~~i 409 (447)
++++++++.|+++ +.+.+ .+.+.++.+.+.... .+..+.+.|++ +||++.+. + +.+
T Consensus 306 ~~~~~l~~~L~~~-g~~~~---~~~~~i~~i~~~~~~-----------~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~l 370 (402)
T TIGR01821 306 ENVKRLKNLLEAL-GIPVI---PNPSHIVPVIIGDAA-----------LCKKVSDLLLNKHGIYVQPINYPTVPRGTERL 370 (402)
T ss_pred HHHHHHHHHHHHc-CCCcC---CCCCCEEEEEeCCHH-----------HHHHHHHHHHhcCCEEEEeECCCCCCCCCceE
Confidence 8888999988876 33322 234556666543211 23457788764 59998763 2 579
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 410 MMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 410 R~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
|++|++.+|++||++++++|+++++++
T Consensus 371 Ris~~~~~t~edi~~~~~~l~~~~~~~ 397 (402)
T TIGR01821 371 RITPTPAHTDKMIDDLVEALLLVWDRL 397 (402)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999988653
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=267.51 Aligned_cols=334 Identities=20% Similarity=0.240 Sum_probs=239.1
Q ss_pred CCEEEecCCccccccCCCC-CHHHHHHHHHHHhcCCccc---ccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhH
Q 013204 32 GKKYLDSLAGLWCTALGGS-EPRLVAAATAQLNTLPFYH---SFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEA 107 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA 107 (447)
|++++||+|+ ++||++ ||++++++.+++++....+ +...++++...++++++++++. .++.++++||++|
T Consensus 45 ~~~~~~~~s~---dylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g---~~~~~~~~sG~~a 118 (407)
T PRK09064 45 EREVTVWCSN---DYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHG---KEAALVFTSGYVS 118 (407)
T ss_pred CceEEEEECC---CCcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhC---CCcEEEECcHHHH
Confidence 6999999888 778875 9999999999998754322 2223467889999999999863 3567888999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 108 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 108 ~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
|+.+++++... .++.+++.+..+|++....+...+.+. ...+.
T Consensus 119 n~~ai~~l~~~-------~~~~~i~~~~~~h~s~~~~~~~~~~~~------------~~~~~------------------ 161 (407)
T PRK09064 119 NDATLSTLAKL-------IPDCVIFSDELNHASMIEGIRRSRCEK------------HIFRH------------------ 161 (407)
T ss_pred HHHHHHHHhCC-------CCCCEEEEeCcchHHHHHHHHHcCCcE------------EEECC------------------
Confidence 99999987521 124556656566777655544333221 00111
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-C-CCccccccccccCCC-
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-A-FGRLGTMFGCDKYSI- 264 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-g-~g~~g~~~~~~~~~~- 264 (447)
++++++++++....++++++|++|++++++|.+.+ +++|.++|++||++||+||+|+ | +|+.|..+ .++.++
T Consensus 162 ~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~----l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~-~~~~~~~ 236 (407)
T PRK09064 162 NDVAHLEELLAAADPDRPKLIAFESVYSMDGDIAP----IAEICDLADKYNALTYLDEVHAVGMYGPRGGGI-AERDGLM 236 (407)
T ss_pred CCHHHHHHHHHhccCCCCeEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEECCCcccccCCCCCCh-HHhcCCC
Confidence 11377888776543346789999999999998887 9999999999999999999997 5 46666543 345554
Q ss_pred -CCCee--eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhc-HHHHHHHH
Q 013204 265 -KPDLV--SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERN-IVEQVNKI 340 (447)
Q Consensus 265 -~~d~v--~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~-~~~~~~~~ 340 (447)
.+|++ +|||+++.. .|++++++++++.+..... . ...+.+.+|+++++++++++.+++.+ ..++++++
T Consensus 237 ~~~div~~t~sKa~g~~---GG~~~~~~~~~~~l~~~~~---~--~~~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~ 308 (407)
T PRK09064 237 DRIDIIEGTLAKAFGVM---GGYIAGSAALVDAVRSYAP---G--FIFTTSLPPAIAAAALASIRHLKESNEERERHQER 308 (407)
T ss_pred CCCeEEEEecchhhhcc---CceEecCHHHHHHHHHhCc---c--ccccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 46887 899999742 2678899998887753211 1 12355678888999999999887543 45778889
Q ss_pred HHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHH-cCceEEee-------C-CEEEE
Q 013204 341 APKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEK-HGMLVRVS-------G-DNIMM 411 (447)
Q Consensus 341 ~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~-------g-~~iR~ 411 (447)
++++++.|+++ +..++ ...+.++.+.+.+.. ....+.++|++ +||++.+. + +.+|+
T Consensus 309 ~~~l~~~L~~~-g~~~~---~~~~~iv~i~~~~~~-----------~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRi 373 (407)
T PRK09064 309 AAKLKAALDAA-GIPVM---PNESHIVPVMVGDPE-----------KCKKASDMLLEEHGIYVQPINYPTVPRGTERLRI 373 (407)
T ss_pred HHHHHHHHHHc-CCCCC---CCCCCEEEEEeCCHH-----------HHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEE
Confidence 99999999876 33322 123555555543211 24457788775 59999753 2 56999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 412 SPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 412 ~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+|++.+|++|+++++++|+++++++
T Consensus 374 s~~~~~t~edi~~l~~~l~~~~~~~ 398 (407)
T PRK09064 374 TPTPFHTDEMIDHLVEALVEVWARL 398 (407)
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999988654
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-31 Score=256.46 Aligned_cols=338 Identities=18% Similarity=0.153 Sum_probs=244.2
Q ss_pred CCEEEecCCccccccCCC-CCHHHHHHHHHHHhcCCcc---cccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhH
Q 013204 32 GKKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLPFY---HSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEA 107 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA 107 (447)
++++++|+|+ ++||. +||++++++.+++++++.+ ++...+.+..+.+|++++++++ +.+.+++++||+.|
T Consensus 101 ~r~~l~FsSn---dYLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~---g~e~all~sSGy~A 174 (476)
T PLN02955 101 FKKLLLFSGN---DYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLK---KKEDCLVCPTGFAA 174 (476)
T ss_pred CceEEEeecc---CccCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHH---CCCcEEEECChHHH
Confidence 4689999888 66774 7999999999999886543 3456678889999999999997 66789999999999
Q ss_pred HHHHHHHHHHHHH---hcC--CCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCCh
Q 013204 108 NDTQVKLVWYYNN---ALG--RPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETE 182 (447)
Q Consensus 108 ~~~Al~~~~~~~~---~~~--~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (447)
|..++..+..... ..+ ..+++.+|+.+...|.+...++..+.... +. ...
T Consensus 175 N~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~-----~a-----~~~--------------- 229 (476)
T PLN02955 175 NMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQG-----NV-----EVF--------------- 229 (476)
T ss_pred HHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccC-----Cc-----eEE---------------
Confidence 9999986521100 000 02346678889999999766665442100 00 000
Q ss_pred hHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc--ccccc
Q 013204 183 EEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT--MFGCD 260 (447)
Q Consensus 183 ~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~--~~~~~ 260 (447)
.|.|+++++|++++..... ..++|++|+++++.|.++| |++|.++|++||++||+||+|+ +|..|+ .+..+
T Consensus 230 -~f~HND~~~Le~~L~~~~~-~~~~Vv~EgV~SmdGdiap----L~eL~~L~~~~ga~LiVDEAH~-~Gv~G~~G~G~~e 302 (476)
T PLN02955 230 -VYRHCDMYHLNSLLSSCKM-KRKVVVTDSLFSMDGDFAP----MEELSQLRKKYGFLLVIDDAHG-TFVCGENGGGVAE 302 (476)
T ss_pred -EeCCCCHHHHHHHHHhCCC-CceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCcEEEEccccc-CceecCCCCcHHH
Confidence 1234446999999876543 4578999999999999988 9999999999999999999997 557776 44567
Q ss_pred cCCCCCCe----eeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh-hcHHH
Q 013204 261 KYSIKPDL----VSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE-RNIVE 335 (447)
Q Consensus 261 ~~~~~~d~----v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-~~~~~ 335 (447)
++++.+|+ .+|||++|. ..|++++++++++.+.... +.+. ++.+.+|..+++++++++++.+ +..++
T Consensus 303 ~~g~~~di~ii~~TLsKA~G~---~GGfi~gs~~~~~~l~~~~---~~~i--fStalpp~~aaa~laal~l~~~~~~~r~ 374 (476)
T PLN02955 303 EFNCEADVDLCVGTLSKAAGC---HGGFIACSKKWKQLIQSRG---RSFI--FSTAIPVPMAAAAYAAVVVARKEKWRRK 374 (476)
T ss_pred HhCCCCCCcEEEEeCccchhc---cCceeecHHHHHHHHHHhC---CCCe--ecccccHHHHHHHHHHHHHHhcCHHHHH
Confidence 88887665 479999983 2357999999998887432 1222 2334456667778888988754 34567
Q ss_pred HHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-------C-C
Q 013204 336 QVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-------G-D 407 (447)
Q Consensus 336 ~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------g-~ 407 (447)
+++++.+++++.+ .+ +. ...++.+.+.++. .+..+.++|+++|+++.+. + .
T Consensus 375 ~L~~n~~~fr~~~-G~---~~------~sPI~pI~ig~~~-----------~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~ 433 (476)
T PLN02955 375 AIWERVKEFKALS-GV---DI------SSPIISLVVGNQE-----------KALKASRYLLKSGFHVMAIRPPTVPPNSC 433 (476)
T ss_pred HHHHHHHHHHHhc-CC---CC------CCCEEEEEeCCHH-----------HHHHHHHHHHHCCCEEEEECCCCCCCCCc
Confidence 7888888887632 21 21 1344455555432 3456889999999999854 2 4
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 408 NIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 408 ~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
++|++.+..||++||+.++++|.++...+
T Consensus 434 rLRi~lsA~Ht~edId~lv~~L~~~~~~~ 462 (476)
T PLN02955 434 RLRVTLSAAHTTEDVKKLITALSSCLDFD 462 (476)
T ss_pred eEEEeeCCCCCHHHHHHHHHHHHHHHhhh
Confidence 69999999999999999999998886554
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-30 Score=254.34 Aligned_cols=340 Identities=16% Similarity=0.203 Sum_probs=236.6
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcc---cccCcCCChHHHHHHHHHHHh
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY---HSFWNRTTKPSLDLAKELLEM 89 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~ 89 (447)
...+++..++.|.+++|.+||+|||+. +||++++++.+++++.+.. ++.+....+...+|+++++++
T Consensus 42 ~~~~~~~~~~~g~~~~~~~~~~YL~l~----------~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~ 111 (407)
T PRK07179 42 NGKHLVLGKTPGPDAIILQSNDYLNLS----------GHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAF 111 (407)
T ss_pred CCceEEeecCCCCcEEEeecCCccCCC----------CCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHH
Confidence 456788889999999999999999986 6899999999999764322 233333446788999999998
Q ss_pred cCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCC
Q 013204 90 FTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDC 169 (447)
Q Consensus 90 ~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (447)
+ +.+++++++||++||+.+++.+. ..++.|++ +...|..........+... .++
T Consensus 112 ~---g~~~~~~~~sG~~An~~~l~~l~--------~~g~~v~~-~~~~h~s~~~~~~~~g~~~--------------~~~ 165 (407)
T PRK07179 112 T---GFESCLLCQSGWAANVGLLQTIA--------DPNTPVYI-DFFAHMSLWEGVRAAGAQA--------------HPF 165 (407)
T ss_pred h---CCCcEEEECCHHHHHHHHHHHhC--------CCCCEEEE-ECCcCHHHHHHHHHCCCeE--------------EEe
Confidence 7 34578999999999999999763 12344544 4555555433322222110 011
Q ss_pred CCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcC
Q 013204 170 PHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA 249 (447)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g 249 (447)
.+.++++|++.+.. .++++|+++++++++|.+.| +++|.++|++||+++|+||+|+
T Consensus 166 ----------------~~~d~~~l~~~l~~---~~~~lV~v~~v~n~tG~i~p----l~~I~~l~~~~~~~livDea~~- 221 (407)
T PRK07179 166 ----------------RHNDVDHLRRQIER---HGPGIIVVDSVYSTTGTIAP----LADIVDIAEEFGCVLVVDESHS- 221 (407)
T ss_pred ----------------cCCCHHHHHHHHHh---cCCeEEEECCCCCCCCcccc----HHHHHHHHHHcCCEEEEECccc-
Confidence 01124778887753 23578999999999999888 8999999999999999999997
Q ss_pred CCcccccc--ccccCCCC--CCeee--ecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHH
Q 013204 250 FGRLGTMF--GCDKYSIK--PDLVS--FAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIE 323 (447)
Q Consensus 250 ~g~~g~~~--~~~~~~~~--~d~v~--~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a 323 (447)
+|..|..+ ....+++. +|+++ ++|++++ ++|++++++++++.+..... ...+++|. .+..++++.+
T Consensus 222 ~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g~---~~G~l~~~~~~~~~~~~~~~---~~~~~~t~--~~~~~aa~~a 293 (407)
T PRK07179 222 LGTHGPQGAGLVAELGLTSRVHFITASLAKAFAG---RAGIITCPRELAEYVPFVSY---PAIFSSTL--LPHEIAGLEA 293 (407)
T ss_pred ccCcCCCCCchHHhcCCCCCCCEEEeechHhhhc---cCeEEEeCHHHHHHHHHhCc---CeeeCCCC--CHHHHHHHHH
Confidence 54443321 23455653 47765 6899964 68999999998887753210 11222232 3455556667
Q ss_pred HHHHHhhh-cHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceE
Q 013204 324 ALKIYKER-NIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLV 402 (447)
Q Consensus 324 ~l~~~~~~-~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~ 402 (447)
+++.+... +..++++++++++++.|+++ +..+ .+.+.++.+.+.... ....+.+.|.++||++
T Consensus 294 al~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v----~~~~~i~~l~~~~~~-----------~~~~~~~~L~~~GI~~ 357 (407)
T PRK07179 294 TLEVIESADDRRARLHANARFLREGLSEL-GYNI----RSESQIIALETGSER-----------NTEVLRDALEERNVFG 357 (407)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCCC----CCCCCEEEEEeCCHH-----------HHHHHHHHHHHCCceE
Confidence 78776543 46788999999999999886 3322 244667666654211 1345778899999974
Q ss_pred E----ee----CCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 403 R----VS----GDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 403 ~----~~----g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
. +. .+.+||+++..+|++||++++++|++++++.
T Consensus 358 ~~~~~p~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~~~~~ 399 (407)
T PRK07179 358 AVFCAPATPKNRNLIRLSLNADLTASDLDRVLEVCREARDEV 399 (407)
T ss_pred eeecCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhh
Confidence 3 21 2579999999999999999999999887763
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-30 Score=252.44 Aligned_cols=341 Identities=16% Similarity=0.217 Sum_probs=232.4
Q ss_pred EecCCccccccCCC-CCHHHHHHHHHHHhcCCcc---cccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHH
Q 013204 36 LDSLAGLWCTALGG-SEPRLVAAATAQLNTLPFY---HSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQ 111 (447)
Q Consensus 36 lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~A 111 (447)
|||+++ ++||. +||++++++.+++++++.. ++.+.+......+|++++++++ +.+..++++||+.|+..+
T Consensus 1 ~~f~s~---dyLgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~---g~e~al~~~sG~~a~~~~ 74 (392)
T PLN03227 1 LNFATH---DFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFL---GTESAILYSDGASTTSST 74 (392)
T ss_pred CCCcCc---CccCCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHh---CCCcEEEecCcHHHHHHH
Confidence 467665 55664 7999999999999874332 2233456678899999999997 345788899999999988
Q ss_pred HHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHH
Q 013204 112 VKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191 (447)
Q Consensus 112 l~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (447)
+.... ...+.|++-++.| ++....+...+... ..++. .+ .+
T Consensus 75 i~~l~--------~~GD~Vl~~~~~h-~s~~~~~~l~~~~~------------~~~~~----------~d--------~~ 115 (392)
T PLN03227 75 VAAFA--------KRGDLLVVDRGVN-EALLVGVSLSRANV------------RWFRH----------ND--------MK 115 (392)
T ss_pred HHHhC--------CCCCEEEEecccc-HHHHHHHHHcCCeE------------EEeCC----------CC--------HH
Confidence 87653 3346666655555 54433322222110 00111 01 13
Q ss_pred HHHHHHHhh----------CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc--cccc
Q 013204 192 NLEDLILKE----------GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT--MFGC 259 (447)
Q Consensus 192 ~le~~l~~~----------~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~--~~~~ 259 (447)
++++.+... ...++..|++|++++++|.++| +++|+++|++||+++|+||+|+ +|..|. .++.
T Consensus 116 ~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~----l~~i~~l~~~~g~~livDe~~~-~g~~g~~G~g~~ 190 (392)
T PLN03227 116 DLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAP----LKELVALKEEFHYRLILDESFS-FGTLGKSGRGSL 190 (392)
T ss_pred HHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccC----HHHHHHHHHHcCCEEEEECccc-ccccCCCCCcHH
Confidence 334333221 1135679999999999998888 9999999999999999999997 555443 2677
Q ss_pred ccCCCCC----CeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCc--HHHHHHHHHHHHH-Hhhhc
Q 013204 260 DKYSIKP----DLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGH--PVSCAVAIEALKI-YKERN 332 (447)
Q Consensus 260 ~~~~~~~----d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~~~aa~a~l~~-~~~~~ 332 (447)
+++|+.| |++++|++-+.| +..|++++++++++.+.. ..+..+|+++ |+.+++++++++. ++.++
T Consensus 191 ~~~g~~p~~~~Div~~slsk~~g-~~gg~v~~~~~~~~~~~~-------~~~~~~~~~~~~p~~~~aa~~al~~~~~~~~ 262 (392)
T PLN03227 191 EHAGLKPMVHAEIVTFSLENAFG-SVGGMTVGSEEVVDHQRL-------SGSGYCFSASAPPFLAKADATATAGELAGPQ 262 (392)
T ss_pred HHcCCCCCCCceEEEeechhhhh-ccCcEEecCHHHHHHHHH-------hCcCccccCCCCHHHHHHHHHHHHHHhcCHH
Confidence 8899988 999876332222 455778889998877642 2344566654 7777777777754 45567
Q ss_pred HHHHHHHHHHHHHHhHhhccCCCceeeEee--------eeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEe
Q 013204 333 IVEQVNKIAPKFQDGVKAFSDSPIIGEIRG--------TGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV 404 (447)
Q Consensus 333 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~--------~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~ 404 (447)
+.++++++++++++.|++. +++.+.++++ .|.++++.+.+..... .. ........+.+.|+++|+++.+
T Consensus 263 ~~~~l~~~~~~l~~~L~~~-~~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~-~~-~~~~~~~~~~~~~~~~Gi~~~~ 339 (392)
T PLN03227 263 LLNRLHDSIANLYSTLTNS-SHPYALKLRNRLVITSDPISPIIYLRLSDQEATR-RT-DETLILDQIAHHSLSEGVAVVS 339 (392)
T ss_pred HHHHHHHHHHHHHHHHHhc-CCccccccccccccCCCCCCCEEEEEeCCHHHhh-hh-hhhhHHHHHHHHHHHCCCEEEe
Confidence 8899999999999999863 4555555555 3557888875432111 00 0111235688999999999864
Q ss_pred eC------------CEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 405 SG------------DNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 405 ~g------------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
.+ ..+|++++..+|+|||++++++|+++++++.
T Consensus 340 ~~~~~~~~~~~~P~~~iR~~~~~~~t~eei~~~~~~l~~~~~~~~ 384 (392)
T PLN03227 340 TGGHVKKFLQLVPPPCLRVVANASHTREDIDKLLTVLGEAVEAIL 384 (392)
T ss_pred cccccCCcCCCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 22 3579999999999999999999999998764
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-29 Score=246.83 Aligned_cols=347 Identities=16% Similarity=0.225 Sum_probs=236.5
Q ss_pred CCeEEEEecCcEEEeCCCCEEEecCCccccccCCC-CCHHHHHHHHHHHhcCCc---ccccCcCCChHHHHHHHHHHHhc
Q 013204 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLPF---YHSFWNRTTKPSLDLAKELLEMF 90 (447)
Q Consensus 15 ~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~ 90 (447)
+|.++.+++|++|+ .||++|+||+++ .++|| .+|.+.+++.+++.+... .+....+..+...++++++.+.+
T Consensus 16 ~~~~~~~~~g~~~~-~~g~~~id~~~~---~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~ 91 (385)
T TIGR01825 16 SIRVLESAQGPRVR-VNGKEVINLSSN---NYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFK 91 (385)
T ss_pred cccccccCCCceEE-ECCceEEEeecc---CccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHh
Confidence 58889999999999 999999999875 56788 899999999999875422 12233456778889999998876
Q ss_pred CcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC
Q 013204 91 TASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP 170 (447)
Q Consensus 91 ~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (447)
. .+..++.++|++++..+++.+. .+++.|++. ..+|+.....+...+..... ++..
T Consensus 92 g---~~~~i~~~sG~~a~~~a~~~~~--------~~gd~vi~~-~~~~~~~~~~~~~~g~~~~~------------~~~~ 147 (385)
T TIGR01825 92 K---TEAALVFQSGFNTNQGVLSALL--------RKGDIVLSD-ELNHASIIDGLRLTKATKKI------------YKHA 147 (385)
T ss_pred C---CCcEEEECcHHHHHHHHHHHhC--------CCCCEEEEE-ccccHHHHHHHHhcCCceEE------------eCCC
Confidence 3 2355677788999998888653 233555554 55566654443333321100 0000
Q ss_pred CcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcC-
Q 013204 171 HYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA- 249 (447)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g- 249 (447)
+.+++++.+......++++|+++++++.+|.+.+ +++|.++|++||+++|+||+|+.
T Consensus 148 ------------------d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~----~~~i~~l~~~~~~~li~De~~~~~ 205 (385)
T TIGR01825 148 ------------------DMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAP----LPEIVELAERYGAVTYVDDAHGSG 205 (385)
T ss_pred ------------------CHHHHHHHHHhhccCCCeEEEEecCCcCCCCccC----HHHHHHHHHHhCCEEEEECccccc
Confidence 0256777665433345778899999988888776 89999999999999999999963
Q ss_pred -CCccccccccccCCCCCC----eeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHH
Q 013204 250 -FGRLGTMFGCDKYSIKPD----LVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEA 324 (447)
Q Consensus 250 -~g~~g~~~~~~~~~~~~d----~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~ 324 (447)
+++.|. +....+++.+| +.+|||++++ +.|++++++++++.+..... .+ ..+...++..++++.++
T Consensus 206 ~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~~~---~gG~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~a~~~a 276 (385)
T TIGR01825 206 VMGEAGR-GTVHHFGLEDKVDIQVGTLSKAIGV---VGGYAAGHKELIEYLKNRAR---PF--LFSTAQPPAVVAALAAA 276 (385)
T ss_pred CcCCCCC-ccHhhcCCCcCCcEEEEeccHHhhc---CCCEEecCHHHHHHHHHhCc---cc--cccCCCCHHHHHHHHHH
Confidence 333332 22333444444 3578999964 34788889998888763210 11 11223467778888888
Q ss_pred HHHHhh-hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEE
Q 013204 325 LKIYKE-RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR 403 (447)
Q Consensus 325 l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~ 403 (447)
++.+.+ .+..+++.++++++++.|+++ +.++. ...+.++.+.+.... ....+.+.|+++||++.
T Consensus 277 l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~---~~~~~~~~~~~~~~~-----------~~~~~~~~L~~~gi~v~ 341 (385)
T TIGR01825 277 VDELQRSPELMERLWDNTRFFKAGLGKL-GYDTG---GSETPITPVVIGDEK-----------AAQEFSRRLFDEGIFAQ 341 (385)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCCCC---CCCCCEEEEEECCHH-----------HHHHHHHHHHHCCcEEc
Confidence 886643 456778888889999988876 32222 122334444432110 13458889999999885
Q ss_pred ee-------C-CEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 404 VS-------G-DNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 404 ~~-------g-~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+. + ..+|++|++.+++++|++++++|++++++
T Consensus 342 ~~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~~ 381 (385)
T TIGR01825 342 SIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEKVGKE 381 (385)
T ss_pred ccCCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 21 2 56999999999999999999999998854
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-29 Score=242.90 Aligned_cols=351 Identities=18% Similarity=0.236 Sum_probs=240.4
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCC-CHHHHHHHHHHHhcCCccc---ccCcCCChHHHHHHHHHHHh
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGS-EPRLVAAATAQLNTLPFYH---SFWNRTTKPSLDLAKELLEM 89 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~ 89 (447)
+.|.++.++.|..+++.||++++||+++ .+||++ +|++++++.+++.+....+ ....+..+...++++.+++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~g~~~i~~~~~---~~lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~ia~~ 95 (393)
T TIGR01822 19 KSERIITSPQGADIRVADGREVLNFCAN---NYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIAAF 95 (393)
T ss_pred CcccccccCCCceEEecCCceEEEeeCC---CccccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHH
Confidence 3567788999999998899999999988 677775 9999999999997632221 12224466778999999998
Q ss_pred cCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCC
Q 013204 90 FTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDC 169 (447)
Q Consensus 90 ~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (447)
+. .+++++++||++|+..++..+. .+++.|++.++.|+....+... .+..... .+
T Consensus 96 ~g---~~~~ii~~~~~~a~~~~~~~l~--------~~gd~vi~~~~~~~s~~~~~~~-~~~~~~~------------~~- 150 (393)
T TIGR01822 96 LG---TEDTILYASCFDANGGLFETLL--------GAEDAIISDALNHASIIDGVRL-CKAKRYR------------YA- 150 (393)
T ss_pred hC---CCcEEEECchHHHHHHHHHHhC--------CCCCEEEEeccccHHHHHHHHh-cCCceEE------------eC-
Confidence 73 3567888999999998776553 2346777766666554433322 2211100 00
Q ss_pred CCcccCCCCCCChhHHHHHHHHHHHHHHHhhCC--CcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhh
Q 013204 170 PHYWRYAHPGETEEEYSTRLANNLEDLILKEGP--ETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVI 247 (447)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~--~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~ 247 (447)
+.+++++++.+..... .++++|+++++++++|.+.+ +++|.++|++||+++|+||+|
T Consensus 151 -----------------~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~----l~~i~~la~~~~~~li~De~~ 209 (393)
T TIGR01822 151 -----------------NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAP----LDEICDLADKYDALVMVDECH 209 (393)
T ss_pred -----------------CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCC----HHHHHHHHHHcCCEEEEECCc
Confidence 0113777777764211 25778999999999898876 999999999999999999999
Q ss_pred cCCCccccc--cccccCCC--CCCee--eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHH
Q 013204 248 CAFGRLGTM--FGCDKYSI--KPDLV--SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVA 321 (447)
Q Consensus 248 ~g~g~~g~~--~~~~~~~~--~~d~v--~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa 321 (447)
. +|..|.. ...+..++ .+|++ ++||+++| +++|++++++++++.+.... ..+. .+.+.++..++++
T Consensus 210 ~-~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g--~r~G~~~~~~~~~~~l~~~~---~~~~--~~~~~~~~~~~a~ 281 (393)
T TIGR01822 210 A-TGFLGPTGRGSHELCGVMGRVDIITGTLGKALGG--ASGGFTTARKEVVELLRQRS---RPYL--FSNSLPPAVVGAS 281 (393)
T ss_pred c-ccCcCCCCCchHHhcCCCCCCeEEEEEChHHhhC--CCcEEEEeCHHHHHHHHHhC---ccce--ecCCCCHHHHHHH
Confidence 5 4444321 12223333 35776 67899975 68899999999988876421 1111 1223355666677
Q ss_pred HHHHHHHhh-hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCc
Q 013204 322 IEALKIYKE-RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGM 400 (447)
Q Consensus 322 ~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 400 (447)
.++++.++. ++..++++++.+++++.|+++ +..+. .+.+.++.+.+.+.. ....+.+.|+++||
T Consensus 282 ~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~---~~~~~~~~i~~~~~~-----------~~~~l~~~L~~~gI 346 (393)
T TIGR01822 282 IKVLEMLEASNELRDRLWANTRYFRERMEAA-GFDIK---PADHPIIPVMLYDAV-----------LAQRFARRLLEEGI 346 (393)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCCCC---CCCCCEEEEEeCCHH-----------HHHHHHHHHHHCCe
Confidence 788876643 456788889999999988775 22221 122334444433211 24568888999999
Q ss_pred eEEee-------C-CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 401 LVRVS-------G-DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 401 ~~~~~-------g-~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.+... + ..+|+++++.+|+++|++++++|+++++++
T Consensus 347 ~v~~~~~~~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~~~ 390 (393)
T TIGR01822 347 YVTGFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRIGREL 390 (393)
T ss_pred eEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 88732 2 359999999999999999999999887653
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-29 Score=243.04 Aligned_cols=342 Identities=21% Similarity=0.276 Sum_probs=237.8
Q ss_pred eEEEEecCcEEEeCCCCEEEecCCccccccCCC-CCHHHHHHHHHHHhcCCcc---cccCcCCChHHHHHHHHHHHhcCc
Q 013204 17 LVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLPFY---HSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 17 ~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
.++.+++|.++++ +|++|||+.++ .++|+ .+|++++++.+++++.... +....++.+...++++++++++.
T Consensus 24 ~~~~~~~g~~~~~-~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~- 98 (385)
T PRK05958 24 RPREGGAGRWLVV-DGRRMLNFASN---DYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFG- 98 (385)
T ss_pred cccccCCCceeEe-CCceEEEeeCC---CcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhC-
Confidence 4588999999997 99999999887 35787 7899999999999764321 11223456778899999999873
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCc
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHY 172 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
.++.+++++|++++..+++... .+++.|++. ..+|+.........+.... .++..
T Consensus 99 --~~~~i~~~~g~~~~~~~l~~~~--------~~gd~V~~~-~~~~~~~~~~~~~~g~~~~------------~~~~~-- 153 (385)
T PRK05958 99 --AERALLFSSGYAANLAVLTALA--------GKGDLIVSD-KLNHASLIDGARLSRARVR------------RYPHN-- 153 (385)
T ss_pred --CCcEEEECcHHHHHHHHHHHhC--------CCCCEEEEe-CccCHHHHHHHHhcCCceE------------EeCCC--
Confidence 3567778889999998877542 223556554 5566765555444332211 11111
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-C-C
Q 013204 173 WRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-A-F 250 (447)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-g-~ 250 (447)
+++++++.+.... +++++++++++++.+|...+ +++|+++|++||+++|+||+|+ | +
T Consensus 154 ----------------d~~~l~~~i~~~~-~~~~lvi~~~~~~~~G~~~~----l~~i~~ia~~~~~~li~De~~~~g~~ 212 (385)
T PRK05958 154 ----------------DVDALEALLAKWR-AGRALIVTESVFSMDGDLAP----LAELVALARRHGAWLLVDEAHGTGVL 212 (385)
T ss_pred ----------------CHHHHHHHHHhcc-CCCeEEEEEecccCCCCcCC----HHHHHHHHHHhCCEEEEECccccccc
Confidence 1367777776422 24678899999988887766 9999999999999999999996 2 2
Q ss_pred Ccccccccccc--CCCCCC---eeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHH
Q 013204 251 GRLGTMFGCDK--YSIKPD---LVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEAL 325 (447)
Q Consensus 251 g~~g~~~~~~~--~~~~~d---~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l 325 (447)
++.|..+ ... ....+| +.++||+++. +.|++++++++++.+.... . ....+...++++++++.+++
T Consensus 213 ~~~g~~~-~~~~~~~~~~~~i~~~s~sK~~~~---~Gg~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~aa~~aal 283 (385)
T PRK05958 213 GPQGRGL-AAEAGLAGEPDVILVGTLGKALGS---SGAAVLGSETLIDYLINRA---R--PFIFTTALPPAQAAAARAAL 283 (385)
T ss_pred CCCCCch-HHhhCCCCCCceEEEEechhhccc---CCcEEEcCHHHHHHHHHhC---c--cceecCCCCHHHHHHHHHHH
Confidence 3333322 121 222456 4478999964 2378888998888775321 1 11234456788888888889
Q ss_pred HHHhh-hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEe
Q 013204 326 KIYKE-RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV 404 (447)
Q Consensus 326 ~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~ 404 (447)
+.++. +++.+++.++++++.+.|+++ ...+ +.+.|.++.+.+.... ....+.+.|+++||.+.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~---~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~gI~v~~ 348 (385)
T PRK05958 284 RILRREPERRERLAALIARLRAGLRAL-GFQL---MDSQSAIQPLIVGDNE-----------RALALAAALQEQGFWVGA 348 (385)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHc-CCCc---CCCCCCEEEEEeCCHH-----------HHHHHHHHHHHCCceEec
Confidence 87765 367788888999999999876 2222 2345667666654211 244688899999999975
Q ss_pred e-------C-CEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 405 S-------G-DNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 405 ~-------g-~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
. + +.+|++|+..++++++++++++|++++
T Consensus 349 ~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~~~ 385 (385)
T PRK05958 349 IRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEAL 385 (385)
T ss_pred ccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHhcC
Confidence 2 1 469999999999999999999998753
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-28 Score=213.34 Aligned_cols=342 Identities=19% Similarity=0.237 Sum_probs=243.5
Q ss_pred eEEEEecCcEEEeCCC--CEEEecCCccccccCCC-CCHHHHHHHHHHHhcCCcc---cccCcCCChHHHHHHHHHHHhc
Q 013204 17 LVIEKSEGSYVYDVNG--KKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLPFY---HSFWNRTTKPSLDLAKELLEMF 90 (447)
Q Consensus 17 ~~~~~~~g~~~~d~dg--~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~ 90 (447)
-++.+.+|..+. ++| +.+|.|+++ ++||. +||+|.++-.+++++++.+ .++..++.+.+..|+.+++++.
T Consensus 50 rVi~s~q~p~i~-v~G~~k~ilnFcaN---nYLGLsshPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~kiAqfh 125 (417)
T KOG1359|consen 50 RVITSRQGPTIQ-VKGSDKKILNFCAN---NYLGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKIAQFH 125 (417)
T ss_pred eEEeecccceEE-Eeccccceeeeccc---ccccccCChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHHHHHHh
Confidence 578899999886 666 689999988 78885 8999999999999886543 3355678889999999999885
Q ss_pred CcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcC-CCccchhhhhcccCCccccCCCCCCCCcceecCC
Q 013204 91 TASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQK-SYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDC 169 (447)
Q Consensus 91 ~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~-~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (447)
+.++.++++++..||..++..+. + .+..+|+. --|.+....+.+..
T Consensus 126 ---~rED~ilypscfdANag~feail--------~--pedAvfSDeLNhASIIdGirLck-------------------- 172 (417)
T KOG1359|consen 126 ---GREDTILYPSCFDANAGAFEAIL--------T--PEDAVFSDELNHASIIDGIRLCK-------------------- 172 (417)
T ss_pred ---CCCceEEeccccccchHHHHHhc--------C--hhhhhhccccccchhhhhhHHHh--------------------
Confidence 67789999999999999998774 2 23334433 34555443332221
Q ss_pred CCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-
Q 013204 170 PHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC- 248 (447)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~- 248 (447)
-+.+.+.-+++..+....+-+..+|..+.+.+|.|.+.| |++|.+++++||++|++||.|.
T Consensus 173 --------------ry~h~dv~~l~~~l~~a~k~r~klv~TDg~FSMDGdiaP----l~ei~~La~kYgaLlfiDecHaT 234 (417)
T KOG1359|consen 173 --------------RYRHVDVFDLEHCLISACKMRLKLVVTDGVFSMDGDIAP----LEEISQLAKKYGALLFIDECHAT 234 (417)
T ss_pred --------------hhccchhHHHHHHHHHhhhheEEEEEecceeccCCCccc----HHHHHHHHHhcCcEEEEeecccc
Confidence 123334566776665433347889999999999999999 9999999999999999999996
Q ss_pred CC-CccccccccccCCC--CCCee--eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHH
Q 013204 249 AF-GRLGTMFGCDKYSI--KPDLV--SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIE 323 (447)
Q Consensus 249 g~-g~~g~~~~~~~~~~--~~d~v--~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a 323 (447)
|| |.+| .+.-+.+++ .+|++ |+||++||. --|++.+++.++..++.. .+++..+.+..+..++++ .+
T Consensus 235 gf~G~tG-rGt~E~~~vm~~vdiinsTLgKAlGga--~GGyttgp~~li~llrqr---~RpylFSnslppavV~~a--~k 306 (417)
T KOG1359|consen 235 GFFGETG-RGTAEEFGVMGDVDIINSTLGKALGGA--SGGYTTGPKPLISLLRQR---SRPYLFSNSLPPAVVGMA--AK 306 (417)
T ss_pred eeecCCC-CChHHHhCCCCcceehhhhhhhhhcCC--CCCCccCChhHHHHHHhc---CCceeecCCCChhhhhhh--HH
Confidence 33 4444 234466775 46766 789999872 447899999999988753 345554444443334443 45
Q ss_pred HHHHH-hhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceE
Q 013204 324 ALKIY-KERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLV 402 (447)
Q Consensus 324 ~l~~~-~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~ 402 (447)
+++.+ ........++.+.+++++..+.. ++.+.+.. ..+..+.+. +.+++..+.+.|+++|+++
T Consensus 307 a~dllm~s~~~i~~~~a~~qrfr~~me~a-GftIsg~~---hPI~pv~lG-----------da~lA~~~ad~lLk~Gi~V 371 (417)
T KOG1359|consen 307 AYDLLMVSSKEIQSRQANTQRFREFMEAA-GFTISGAS---HPICPVMLG-----------DARLASKMADELLKRGIYV 371 (417)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhc-CceecCCC---CCccceecc-----------cHHHHHHHHHHHHhcCceE
Confidence 56644 34567788899999999988764 11111000 011122222 2236777899999999998
Q ss_pred Eee-------C-CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 403 RVS-------G-DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 403 ~~~-------g-~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
... | ..||+..+..||+||||++++++.++.+.+
T Consensus 372 igfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~vgr~~ 413 (417)
T KOG1359|consen 372 IGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEVGRFL 413 (417)
T ss_pred EeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHHHHHhh
Confidence 743 3 459999999999999999999999887643
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-27 Score=234.78 Aligned_cols=348 Identities=20% Similarity=0.254 Sum_probs=234.7
Q ss_pred CeEEEEecCcEEEeCCCCEEEecCCccccccCCC-CCHHHHHHHHHHHhcCCccc---ccCcCCChHHHHHHHHHHHhcC
Q 013204 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLPFYH---SFWNRTTKPSLDLAKELLEMFT 91 (447)
Q Consensus 16 ~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~ 91 (447)
+..+++++|.+++|.||+.|+||+++ .++|+ .+|++.+++.+++.+....+ ....+..+...++++++++.+.
T Consensus 25 ~~~~~~~~~~~~~~~~g~~~i~l~~~---~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g 101 (397)
T PRK06939 25 ERVITSPQGADITVADGKEVINFCAN---NYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLG 101 (397)
T ss_pred cccccCCCCceEEecCCCeEEEeecc---CccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhC
Confidence 45678999999999999999999876 55777 68999999999987632211 1223456777889999998873
Q ss_pred cCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC
Q 013204 92 ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH 171 (447)
Q Consensus 92 ~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
.++.+++++|++++..+++.+. .+++.|++.++.|.+............. .++..
T Consensus 102 ---~~~~i~~tsG~~a~~~~~~~l~--------~~gd~vi~~~~~~~~~~~~~~~~~~~~~-------------~~~~~- 156 (397)
T PRK06939 102 ---TEDAILYSSCFDANGGLFETLL--------GKEDAIISDALNHASIIDGVRLCKAKRY-------------RYANN- 156 (397)
T ss_pred ---CCcEEEEcChHHHHHHHHHHhC--------CCCCEEEEEhhhhHHHHHHHHhcCCceE-------------EeCCC-
Confidence 2244556667999999887653 3347788888777665443322221110 01110
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHhhC--CCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-
Q 013204 172 YWRYAHPGETEEEYSTRLANNLEDLILKEG--PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC- 248 (447)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~le~~l~~~~--~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~- 248 (447)
+++++++.+.... ..++++|+++++++..|...+ +++|.++|++||+++|+||+|+
T Consensus 157 -----------------d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~----~~~l~~la~~~~~~li~De~~~~ 215 (397)
T PRK06939 157 -----------------DMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAP----LPEICDLADKYDALVMVDDSHAV 215 (397)
T ss_pred -----------------CHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCC----HHHHHHHHHHhCCEEEEECcccc
Confidence 1366777665321 125678888889888887554 9999999999999999999995
Q ss_pred CC-CccccccccccCCC--CCCee--eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHH
Q 013204 249 AF-GRLGTMFGCDKYSI--KPDLV--SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIE 323 (447)
Q Consensus 249 g~-g~~g~~~~~~~~~~--~~d~v--~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a 323 (447)
|+ +..|. ......++ .+|++ ++||+++| +++|++++++++++.+.... ..+. .+.+.++..++++.+
T Consensus 216 g~~~~~~~-~~~~~~~~~~~~~i~~~S~sK~~~g--~r~G~v~~~~~~~~~l~~~~---~~~~--~~~~~~~~~~~a~~~ 287 (397)
T PRK06939 216 GFVGENGR-GTVEHFGVMDRVDIITGTLGKALGG--ASGGYTAGRKEVIDWLRQRS---RPYL--FSNSLAPAIVAASIK 287 (397)
T ss_pred cCcCCCCC-CHHHHcCCCCCCcEEEEECHHHhCc--cCceEEEeCHHHHHHHHHhC---cccc--ccCCCCHHHHHHHHH
Confidence 32 22222 12233344 35677 68999965 58899999999988886321 0111 122335555677777
Q ss_pred HHHHHhh-hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceE
Q 013204 324 ALKIYKE-RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLV 402 (447)
Q Consensus 324 ~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~ 402 (447)
+++.+.. ++..++++++.+++++.|+++ +... ..+.+.++.+.+.... ....+.+.|+++||.+
T Consensus 288 al~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~---~~~~~~~~~~~~~~~~-----------~~~~~~~~L~~~gI~v 352 (397)
T PRK06939 288 VLELLEESDELRDRLWENARYFREGMTAA-GFTL---GPGEHPIIPVMLGDAK-----------LAQEFADRLLEEGVYV 352 (397)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCCc---CCCCCCEEEEEECCHH-----------HHHHHHHHHHHCCceE
Confidence 7877653 356778888888888888876 2221 1233444443332110 2456888999999988
Q ss_pred Eee--------CCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 403 RVS--------GDNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 403 ~~~--------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
.+. ...+|+++++.+++++|++++++|++++++
T Consensus 353 ~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~ 393 (397)
T PRK06939 353 IGFSFPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKE 393 (397)
T ss_pred eeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 742 146999998899999999999999988765
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-28 Score=237.26 Aligned_cols=336 Identities=18% Similarity=0.247 Sum_probs=228.6
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcc---cccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY---HSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEA 107 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA 107 (447)
||+++++|.++ ..++|| .||++++++.+++++.... ++...+..+...+|+++++++++ .++.++++||++|
T Consensus 44 ~~~~~~~~~sn-~yl~l~-~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g---~~~~i~~~sG~~a 118 (410)
T PRK13392 44 GPRRVTIWCSN-DYLGMG-QHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHG---KESALLFTSGYVS 118 (410)
T ss_pred CCceEEEEECC-CccCCC-CCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhC---CCCEEEECcHHHH
Confidence 57899999876 334555 6999999999999875432 11223345578899999999973 3467788889999
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 108 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 108 ~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
|+.+++.+... .+ ..+|+.+..+|++....+...+..... .+. .
T Consensus 119 ~~~~i~~l~~~-----~~--g~~vi~~~~~h~s~~~~~~~~g~~~~~------------~~~----------~------- 162 (410)
T PRK13392 119 NDAALSTLGKL-----LP--GCVILSDALNHASMIEGIRRSGAEKQV------------FRH----------N------- 162 (410)
T ss_pred HHHHHHHHhcC-----CC--CCEEEEehhhhHHHHHHHHHcCCeEEE------------EeC----------C-------
Confidence 99999854210 12 235566777898876555444432110 000 0
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-CC-CccccccccccCCC-
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-AF-GRLGTMFGCDKYSI- 264 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-g~-g~~g~~~~~~~~~~- 264 (447)
+.+++++.+.....+++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ |+ |..|... .+..++
T Consensus 163 -d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~-~~~~~~~ 236 (410)
T PRK13392 163 -DLADLEEQLASVDPDRPKLIAFESVYSMDGDIAP----IEAICDLADRYNALTYVDEVHAVGLYGARGGGI-AERDGLM 236 (410)
T ss_pred -CHHHHHHHHHhccCCCCEEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEECCccccCcCCCCCch-hhhccCC
Confidence 1245566665433346789999999999998887 9999999999999999999998 43 4444332 233443
Q ss_pred -CCCee--eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh-cHHHHHHHH
Q 013204 265 -KPDLV--SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER-NIVEQVNKI 340 (447)
Q Consensus 265 -~~d~v--~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~-~~~~~~~~~ 340 (447)
.+|++ ++||+++.. .|++++++++++.+..... . ...+.+.+|++++++.++|+.++.. ...++++++
T Consensus 237 ~~~div~~tlsK~~g~~---GG~~~~~~~~~~~l~~~~~---~--~~~s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~ 308 (410)
T PRK13392 237 DRIDMIQGTLAKAFGCL---GGYIAASADLIDFVRSFAP---G--FIFTTALPPAVAAGATAAIRHLKTSQTERDAHQDR 308 (410)
T ss_pred CCCcEEEEEChHhhhcc---cchhhcCHHHHHHHHHhCc---c--hhccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 36776 799998752 2788889999887763211 1 1124456778888888999876543 244667778
Q ss_pred HHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEee-------C-CEEEE
Q 013204 341 APKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVS-------G-DNIMM 411 (447)
Q Consensus 341 ~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------g-~~iR~ 411 (447)
.+++++.|+++ +..+. .+.+.++.+.+..+. ....+.++|+ ++||++.+. + ..+|+
T Consensus 309 ~~~l~~~L~~~-g~~~~---~~~~~~~~i~~~~~~-----------~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRi 373 (410)
T PRK13392 309 VAALKAKLNAN-GIPVM---PSPSHIVPVMVGDPT-----------LCKAISDRLMSEHGIYIQPINYPTVPRGTERLRI 373 (410)
T ss_pred HHHHHHHHHHc-CCCCC---CCCCCEEEEEeCCHH-----------HHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEE
Confidence 88888888875 32221 234555544443211 1345788886 679999864 2 46999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 412 SPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 412 ~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
++++.+|++|+++++++|+++++++
T Consensus 374 s~~~~~t~edid~l~~aL~~~~~~~ 398 (410)
T PRK13392 374 TPTPLHDDEDIDALVAALVAIWDRL 398 (410)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999987653
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-27 Score=229.48 Aligned_cols=326 Identities=19% Similarity=0.188 Sum_probs=219.6
Q ss_pred CEEEecCCccccccCCC-CCHHHHHHHHHHHhcCC-------c---ccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEe
Q 013204 33 KKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLP-------F---YHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFT 101 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~-------~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~ 101 (447)
.+++||+|+ ++||+ .+|++.+++.+++.+.. . +++.+.+..+...++++++++++. .+.++++
T Consensus 4 ~~~~~~~s~---~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~---~~~~l~~ 77 (370)
T PRK05937 4 SLSIDFVTN---DFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHG---APEAFIV 77 (370)
T ss_pred CceEEeECC---CccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhC---CCeEEEE
Confidence 358888887 77886 68999999999887641 1 122334467889999999999973 3567889
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCC
Q 013204 102 NSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGET 181 (447)
Q Consensus 102 ~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (447)
+||+.||...+... .++..+|+.+..+|++...++..... .. +++
T Consensus 78 ~sG~~a~~~~~~~~---------~~~~d~ii~d~~~H~sv~~~~~~~~~--~~------------~~~------------ 122 (370)
T PRK05937 78 PSGYMANLGLCAHL---------SSVTDYVLWDEQVHISVVYSLSVISG--WH------------QSF------------ 122 (370)
T ss_pred CChHHHHHHHHHHh---------CCCCCEEEEEhhhhHHHHHHHHHcCC--ce------------EEe------------
Confidence 99999996544332 23457888899999998776653211 00 001
Q ss_pred hhHHHHHHHHHHHHHHHhhCC--CcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-C-CCcccccc
Q 013204 182 EEEYSTRLANNLEDLILKEGP--ETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-A-FGRLGTMF 257 (447)
Q Consensus 182 ~~~~~~~~~~~le~~l~~~~~--~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-g-~g~~g~~~ 257 (447)
.++++++|++++..... ++..+|+++++++++|.+.| +++|.++|++||+++++||+|+ | +|.+|..+
T Consensus 123 ----~~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~p----l~eI~~l~~~~~~~livDea~~~G~~g~~g~g~ 194 (370)
T PRK05937 123 ----RHNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAP----LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGF 194 (370)
T ss_pred ----cCCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCch
Confidence 11124788888864321 34567889999999999988 9999999999999999999998 3 44444332
Q ss_pred ccccCC---CCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh--c
Q 013204 258 GCDKYS---IKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER--N 332 (447)
Q Consensus 258 ~~~~~~---~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~--~ 332 (447)
.. .++ ..+|+.++||+++.. + +.+++.+++.+.+.... .++. .+.+.++.+++++.++++.+.+. .
T Consensus 195 ~~-~~~~~~~~~~~~tlsK~~g~~--G-~~vl~~~~~~~~~~~~~---~~~~--~s~~~~~~~~~a~~aal~~l~~~~~~ 265 (370)
T PRK05937 195 CH-SLGYENFYAVLVTYSKALGSM--G-AALLSSSEVKQDLMLNS---PPLR--YSTGLPPHLLISIQVAYDFLSQEGEL 265 (370)
T ss_pred HH-hhCCCCCcEEEEechhhhhcC--c-eEEEcCHHHHHHHHHhC---CCCe--ecCCCCHHHHHHHHHHHHHHHhCcHH
Confidence 21 222 235678999998752 2 34556676655554211 1111 33446777777777888887543 2
Q ss_pred HHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee----CCE
Q 013204 333 IVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS----GDN 408 (447)
Q Consensus 333 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----g~~ 408 (447)
..++++++.+++++.|+... + +....+.+... ....+.+.|.++||++... .+.
T Consensus 266 ~~~~l~~l~~~l~~~l~~~~--~--------~~~~~i~~~~~------------~~~~~~~~L~~~gi~v~~~~~~~~~~ 323 (370)
T PRK05937 266 ARKQLFRLKEYFAQKFSSAA--P--------GCVQPIFLPGI------------SEQELYSKLVETGIRVGVVCFPTGPF 323 (370)
T ss_pred HHHHHHHHHHHHHHhcCCCC--C--------CCEEEEEeCCh------------hHHHHHHHHHHCCeeEEeeCCCCCCE
Confidence 45666667777766664321 1 11112333321 1345778889999988743 467
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 409 IMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 409 iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
+|++++..+|++||+++++.|++.++++.+
T Consensus 324 iRis~~~~~t~edid~l~~~L~~~~~~~~~ 353 (370)
T PRK05937 324 LRVNLHAFNTEDEVDILVSVLATYLEKYQK 353 (370)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999987654
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-26 Score=224.26 Aligned_cols=338 Identities=18% Similarity=0.250 Sum_probs=227.5
Q ss_pred EEEecCcEEEeCCCCEEEecCCccccccCCC-CCHHHHHHHHHHHhcCCccc---ccCcCCChHHHHHHHHHHHhcCcCC
Q 013204 19 IEKSEGSYVYDVNGKKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLPFYH---SFWNRTTKPSLDLAKELLEMFTASK 94 (447)
Q Consensus 19 ~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~ 94 (447)
..++.|.++. .||++||||.++ ++||+ .||++++++.+++......+ ....+..+...++++.+++++.
T Consensus 3 ~~~~~~~~~~-~~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~--- 75 (360)
T TIGR00858 3 LDRGPGPEVV-RDGRRLLNFSSN---DYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKG--- 75 (360)
T ss_pred cccCCCCeEE-ECCceEEecccC---CcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhC---
Confidence 4678899998 899999999987 68995 78999999999987643221 1112345677889999999873
Q ss_pred CCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCccc
Q 013204 95 MAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWR 174 (447)
Q Consensus 95 ~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (447)
.+..+++++|++++..+++.+. .+++.|++.++.| ..........+... ..++..
T Consensus 76 ~~~~i~~~~G~~~~~~~l~~~~--------~~gd~v~~~~~~~-~~~~~~~~~~g~~~------------~~~~~~---- 130 (360)
T TIGR00858 76 TEAALLFSSGYLANVGVISALV--------GKGDLILSDALNH-ASLIDGCRLSGARV------------RRYRHN---- 130 (360)
T ss_pred CCCEEEECchHHHHHHHHHHhC--------CCCCEEEEEcccc-HHHHHHHHhcCCce------------EEecCC----
Confidence 2345666778999988777553 2345676665554 44333333222211 011111
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccc
Q 013204 175 YAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLG 254 (447)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g 254 (447)
+++++++.+......++++|+++++++..|.+.+ +++|.++|++||+++|+||+|+ +|..+
T Consensus 131 --------------d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~----~~~i~~l~~~~~~~li~De~~~-~~~~~ 191 (360)
T TIGR00858 131 --------------DVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAP----LPQLVALAERYGAWLMVDDAHG-TGVLG 191 (360)
T ss_pred --------------CHHHHHHHHHHcccCCCeEEEEeCCccCCCCCcC----HHHHHHHHHHcCcEEEEECccc-ccCcC
Confidence 1367777776432134678889999888887766 9999999999999999999997 44433
Q ss_pred cc--cccccCCCCCC-----eeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHH
Q 013204 255 TM--FGCDKYSIKPD-----LVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKI 327 (447)
Q Consensus 255 ~~--~~~~~~~~~~d-----~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~ 327 (447)
.. .....+++.++ +.++||++++ +.|++++++++++.+..... ....+.+.++..++++.++++.
T Consensus 192 ~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~---~gG~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~a~~~al~~ 263 (360)
T TIGR00858 192 EDGRGTLEHFGLKPEPVDIQVGTLSKALGS---YGAYVAGSQALIDYLINRAR-----TLIFSTALPPAVAAAALAALEL 263 (360)
T ss_pred CCCCchHHhcCCCccCCcEEEEechhhhhc---cCcEEEcCHHHHHHHHHhCc-----cceecCCCCHHHHHHHHHHHHH
Confidence 21 12233444433 4478999875 23789999998887753210 1112334567777778888876
Q ss_pred Hhh-hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-
Q 013204 328 YKE-RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS- 405 (447)
Q Consensus 328 ~~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~- 405 (447)
++. ++..++++++.+++.+.|+++ +... ....+.++.+.+.... ....+.++|+++||++.+.
T Consensus 264 ~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~---~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~gI~v~~~~ 328 (360)
T TIGR00858 264 IQEEPWRREKLLALIARLRAGLEAL-GFTL---MPSCTPIVPVIIGDNA-----------SALALAEELQQQGIFVGAIR 328 (360)
T ss_pred HhhCHHHHHHHHHHHHHHHHHHHHc-CCcc---CCCCCCEEEEEeCCHH-----------HHHHHHHHHHHCCeeEeeeC
Confidence 654 356788888999999999876 2221 1234556666654211 1446889999999999742
Q ss_pred -------CCEEEEecCCCCCHHHHHHHHHHHH
Q 013204 406 -------GDNIMMSPPFIMSPEEVDELISKYG 430 (447)
Q Consensus 406 -------g~~iR~~~~~~~t~e~i~~~~~~l~ 430 (447)
++.+|++++..++++++++++++|+
T Consensus 329 ~~~~~~~~~~iRis~~~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 329 PPTVPAGTSRLRLTLSAAHTPGDIDRLAEALK 360 (360)
T ss_pred CCCCCCCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence 2479999999999999999999874
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-25 Score=223.29 Aligned_cols=333 Identities=17% Similarity=0.180 Sum_probs=220.3
Q ss_pred CCCCEEEecCCccccccCCCC--CHHHHHHHHHHHhcCCcc---cccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCCh
Q 013204 30 VNGKKYLDSLAGLWCTALGGS--EPRLVAAATAQLNTLPFY---HSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSG 104 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~--~p~v~~a~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sG 104 (447)
..++++++|+|+ ++||.+ ++.+.+++.+++.+.... ++...++.+...++++++++++. .+..+++++|
T Consensus 97 ~~~~~~~n~~s~---~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g---~~~ai~~~~G 170 (489)
T PLN02483 97 TKTRRCLNLGSY---NYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVG---KPAAIVFGMG 170 (489)
T ss_pred CCCceEEEeecC---CccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhC---CCcEEEECCH
Confidence 356899999877 667753 677888888888775432 22234578899999999999973 3445666779
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhH
Q 013204 105 SEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEE 184 (447)
Q Consensus 105 seA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (447)
+.++..++.... .+++.|++.++.|+....+ ....|.... .++. .
T Consensus 171 ~~an~~~i~al~--------~~Gd~Vi~d~~~h~s~~~~-~~~~Ga~v~------------~~~~----------~---- 215 (489)
T PLN02483 171 YATNSTIIPALI--------GKGGLIISDSLNHNSIVNG-ARGSGATIR------------VFQH----------N---- 215 (489)
T ss_pred HHHHHHHHHHhC--------CCCCEEEEcchhhHHHHHH-HHHcCCeEE------------EEeC----------C----
Confidence 999988777653 2346677656555554333 332332110 0110 0
Q ss_pred HHHHHHHHHHHHHHhh----CC-----CcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc---
Q 013204 185 YSTRLANNLEDLILKE----GP-----ETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR--- 252 (447)
Q Consensus 185 ~~~~~~~~le~~l~~~----~~-----~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~--- 252 (447)
+.+++++.+... .+ ....+|++|++.++.|.+.+ +++|.++|++||+++|+||+|+ +|.
T Consensus 216 ----d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~----l~~I~~la~~~~~~livDEa~s-~g~~G~ 286 (489)
T PLN02483 216 ----TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCK----LPEIVAVCKKYKAYVYLDEAHS-IGAVGK 286 (489)
T ss_pred ----CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccC----HHHHHHHHHHcCCEEEEECcCc-cCccCC
Confidence 124555554321 11 12458899999999998877 9999999999999999999997 433
Q ss_pred cccccccccCCCC---CCee--eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCC--CCCCcHHHHHHHHHHH
Q 013204 253 LGTMFGCDKYSIK---PDLV--SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGF--TYSGHPVSCAVAIEAL 325 (447)
Q Consensus 253 ~g~~~~~~~~~~~---~d~v--~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--t~~~~~~~~~aa~a~l 325 (447)
+|.. ..+++++. .|++ +|||++++. .|++++++++++.+... .... ..+.+|..+.++.++|
T Consensus 287 ~G~g-~~~~~~v~~~~~dI~~~SfSKs~g~~---GG~i~~~~~li~~l~~~-------~~~~~~~~~~~p~~~~~~~aaL 355 (489)
T PLN02483 287 TGRG-VCELLGVDPADVDIMMGTFTKSFGSC---GGYIAGSKELIQYLKRT-------CPAHLYATSMSPPAVQQVISAI 355 (489)
T ss_pred CCCc-hHHhcCCCcccCcEEEEecchhcccC---ceEEEcCHHHHHHHHHh-------CccccccCCcCHHHHHHHHHHH
Confidence 4432 34555554 3666 789999753 38899999999988632 1111 2234566666777888
Q ss_pred HHHhhh-------cHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc
Q 013204 326 KIYKER-------NIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH 398 (447)
Q Consensus 326 ~~~~~~-------~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 398 (447)
+.+..+ +..++++++.+++++.|+++ +..+... ..+.+.++.+.... ....+.++|+++
T Consensus 356 ~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~-G~~v~~~--~~sp~~~l~l~~~~-----------~~~~~~~~Ll~~ 421 (489)
T PLN02483 356 KVILGEDGTNRGAQKLAQIRENSNFFRSELQKM-GFEVLGD--NDSPVMPIMLYNPA-----------KIPAFSRECLKQ 421 (489)
T ss_pred HHHHhCccccchHHHHHHHHHHHHHHHHHHHHC-CCcccCC--CCCCEEEEEECCHH-----------HHHHHHHHHHHC
Confidence 766422 24567888888899988876 3222111 11233344433211 134588889999
Q ss_pred CceEEeeC--------CEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 399 GMLVRVSG--------DNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 399 Gi~~~~~g--------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
||.+.+.+ +.+|++++..+|+|+|++++++|+++++.+.
T Consensus 422 GI~v~~~~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~~~~~~~~ 468 (489)
T PLN02483 422 NVAVVVVGFPATPLLLARARICISASHSREDLIKALEVISEVGDLVG 468 (489)
T ss_pred CcEEeeeCCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 99998432 4699999999999999999999999987654
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=203.83 Aligned_cols=319 Identities=19% Similarity=0.230 Sum_probs=235.7
Q ss_pred CCHHHHHHHHHHHhcCC---cccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCC
Q 013204 50 SEPRLVAAATAQLNTLP---FYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPN 126 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~ 126 (447)
.||+|.+|+.+.+++.+ .+.+...+.+....+|+++++++. .++..++++|-.-||+..+..+-+. =
T Consensus 186 ~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LH---qK~aALlFsSCfVANDstLftLak~-------l 255 (570)
T KOG1360|consen 186 RHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLH---QKEAALLFSSCFVANDSTLFTLAKK-------L 255 (570)
T ss_pred CChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHh---cCcceeeeeeeeeccchHHHHHHHH-------C
Confidence 79999999999998743 345566778889999999999996 5667788888999999988854211 1
Q ss_pred cceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEE
Q 013204 127 KKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIA 206 (447)
Q Consensus 127 ~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a 206 (447)
..-+|.-+..-|.+.+..+..++.+-+ .|.|+++++|++++....+...+
T Consensus 256 pgcei~SD~gNHASMI~GIrns~v~K~------------------------------IFrHND~~hL~~lL~~~~~svPK 305 (570)
T KOG1360|consen 256 PGCEIFSDEGNHASMIQGIRNSRVPKH------------------------------IFRHNDLDHLEQLLQSSPKSVPK 305 (570)
T ss_pred CCcEEeccccchHHHHHHhhhcCCcce------------------------------eeccCCHHHHHHHHHhCCCCCCc
Confidence 233444455778887766665544321 35566679999999987777788
Q ss_pred EEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccc--cccCCC--CCCee--eecccCCCccc
Q 013204 207 AFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFG--CDKYSI--KPDLV--SFAKALSSAYM 280 (447)
Q Consensus 207 ~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~--~~~~~~--~~d~v--~~sK~l~gg~~ 280 (447)
.|-+|.|+++.|.++| |++|++++++||++..+||||. .|..|..++ -+..|+ +.||+ |++|++|.-+
T Consensus 306 ivAFEtVhSM~Gavcp----leelcDvah~yGAiTFlDEVHA-VGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGcVG- 379 (570)
T KOG1360|consen 306 IVAFETVHSMDGAVCP----LEELCDVAHKYGAITFLDEVHA-VGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGCVG- 379 (570)
T ss_pred eEEEeeeeccCCCcCC----HHHHHHHHHHhCceeeeehhhh-hccccCCCCCccccCCcchhhhhcccchhhhccccc-
Confidence 9999999999999999 9999999999999999999998 666776543 355665 46888 6899998632
Q ss_pred ceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhc---HHHHHHHHHHHHHHhHhhccCCCce
Q 013204 281 PIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERN---IVEQVNKIAPKFQDGVKAFSDSPII 357 (447)
Q Consensus 281 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~ 357 (447)
|++..+..+++.++.-. . . ...|.+.+|+.++.|++++++++.++ ++..-+++.+++++.|.++ +.|++
T Consensus 380 --GYIAat~~LvDmiRSyA--a-G--FIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~-GiPVi 451 (570)
T KOG1360|consen 380 --GYIAATRKLVDMIRSYA--A-G--FIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMEL-GIPVI 451 (570)
T ss_pred --ceehhhhhHHHHHHHhc--C-c--eEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHc-CCccc
Confidence 67999999999887421 1 1 22466778999999999999887542 4555666778888888776 44432
Q ss_pred eeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEee-------C-CEEEEecCCCCCHHHHHHHHHH
Q 013204 358 GEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVS-------G-DNIMMSPPFIMSPEEVDELISK 428 (447)
Q Consensus 358 ~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------g-~~iR~~~~~~~t~e~i~~~~~~ 428 (447)
. .-..++.+.+.+.. +.....+.|+ ++||++... | +.+|+.|...||++.++.+++.
T Consensus 452 ~---~pSHIiPv~vgda~-----------l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~ 517 (570)
T KOG1360|consen 452 P---NPSHIIPVRVGDAA-----------LAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMMNILVNA 517 (570)
T ss_pred C---CCcceeeeeccCHH-----------HHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHHHHHHHHHH
Confidence 1 12233344443322 3444555554 678988743 3 5699999999999999999999
Q ss_pred HHHHHHHH
Q 013204 429 YGKALKAT 436 (447)
Q Consensus 429 l~~~l~~~ 436 (447)
|..+.+++
T Consensus 518 l~~vw~~v 525 (570)
T KOG1360|consen 518 LLDVWNEV 525 (570)
T ss_pred HHHHHHHc
Confidence 99988775
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=210.19 Aligned_cols=340 Identities=14% Similarity=0.128 Sum_probs=229.2
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCC-cccccCcCCChHHHHHHHHHHHhcC-cCCCC-eEEEeCChhhHHH
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP-FYHSFWNRTTKPSLDLAKELLEMFT-ASKMA-KVFFTNSGSEAND 109 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~-~v~~~~sGseA~~ 109 (447)
.+.+|+..|... + ..++.+.+++.+++.+.. .++ ...+..+....+++++.+.+. ...++ +|+.|+|+++|+.
T Consensus 28 ~~vi~l~iG~Pd--~-~~p~~i~~a~~~a~~~~~~~Y~-~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~ 103 (393)
T COG0436 28 EDVIDLSIGEPD--F-PTPEHIIEAAIEALEEGGTHYT-PSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALF 103 (393)
T ss_pred CCEEEeCCCCCC--C-CCCHHHHHHHHHHHhcccCCCC-CCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHH
Confidence 468888766321 1 267889999999998754 333 334556666666677666653 23444 4999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC-CcccCCCCCCChhHHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP-HYWRYAHPGETEEEYSTR 188 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 188 (447)
.++.... .+.+.||+.+|.|..+.......++.+..... +.. +.|. .
T Consensus 104 ~~~~a~~--------~pGDeVlip~P~Y~~y~~~~~~~gg~~v~v~l-----------~~~~~~f~-------------~ 151 (393)
T COG0436 104 LAFLALL--------NPGDEVLIPDPGYPSYEAAVKLAGGKPVPVPL-----------DEEENGFK-------------P 151 (393)
T ss_pred HHHHHhc--------CCCCEEEEeCCCCcCHHHHHHhcCCEEEEEeC-----------CcCccCCc-------------C
Confidence 9998764 44577999999998887777666665432210 000 0111 0
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc-cc-ccccCCC--
Q 013204 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT-MF-GCDKYSI-- 264 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~-~~-~~~~~~~-- 264 (447)
+++++++.+. +++.++++..|.|++| .+.++++|++|.++|++||+++|+||+|.++...|. .. ..+..+.
T Consensus 152 d~~~l~~~i~---~ktk~i~ln~P~NPTG--av~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~ 226 (393)
T COG0436 152 DLEDLEAAIT---PKTKAIILNSPNNPTG--AVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARD 226 (393)
T ss_pred CHHHHHhhcC---ccceEEEEeCCCCCcC--cCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcc
Confidence 1377777776 3445566667777776 567899999999999999999999999999988874 22 2222221
Q ss_pred -CCCeeeecccCCCcccceeEEEeC-hhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh----hcHHHHHH
Q 013204 265 -KPDLVSFAKALSSAYMPIGAILVS-PEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE----RNIVEQVN 338 (447)
Q Consensus 265 -~~d~v~~sK~l~gg~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~----~~~~~~~~ 338 (447)
...+-+|||.++..+||+|+++++ +++++.+.. +....+++.+.+++.++.++|+.-.. +...+.++
T Consensus 227 ~~i~i~s~SK~~~mtGwRvG~~v~~~~~l~~~~~~-------~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~ 299 (393)
T COG0436 227 RTITINSFSKTYGMTGWRIGWVVGPPEELIAALRK-------LKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYR 299 (393)
T ss_pred eEEEEecccccccccccceeEeecChHHHHHHHHH-------HHHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 112236899777655999999999 778887752 23345667888999999999974311 22234566
Q ss_pred HHHHHHHHhHhhccCCCceeeEe-eeeeEE-EEEeecCCCCCCCCCCCcchHHHHHHHHHH-cCceEEeeC--------C
Q 013204 339 KIAPKFQDGVKAFSDSPIIGEIR-GTGLIL-GTEFADNKSPNEPFPPEWGIGAYFGAQCEK-HGMLVRVSG--------D 407 (447)
Q Consensus 339 ~~~~~l~~~L~~l~~~~~~~~~~-~~g~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~g--------~ 407 (447)
++++.+.+.|+++ +.+.... ..|.+. .+++.... ....|+.+|++ .||.+.|+. +
T Consensus 300 ~rrd~l~~~l~~~---~g~~~~~~p~Ga~Y~~~~i~~~~-----------d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~ 365 (393)
T COG0436 300 ERRDLLVEALNEI---GGLSVVKPPEGAFYLFPKIPELL-----------DSEEFAKKLLEEAGVAVVPGSGFGEPPGEG 365 (393)
T ss_pred HHHHHHHHHHHhc---CCeeeccCCCeeEEEEeecCCCC-----------CHHHHHHHHHHhCCEEEecccccCCCCCCC
Confidence 7777777777765 3233333 445544 34443321 14457777665 579998851 4
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 408 NIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 408 ~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.+|++ +..+++++++++++|.+.++..
T Consensus 366 ~vRis--~~~~~~~l~~a~~rl~~~~~~~ 392 (393)
T COG0436 366 YVRLS--LATSEETLEEALRRLARFLAEY 392 (393)
T ss_pred eEEEE--EecCHHHHHHHHHHHHHHHHhc
Confidence 69999 8888899999999999988753
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.2e-24 Score=204.75 Aligned_cols=328 Identities=22% Similarity=0.276 Sum_probs=215.3
Q ss_pred CEEEecCCccccccCCCC-CHHHHHHHHHHHhcCCcc---cccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHH
Q 013204 33 KKYLDSLAGLWCTALGGS-EPRLVAAATAQLNTLPFY---HSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEAN 108 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~ 108 (447)
+.||.|+++ .+||+. ||+|++++.+++++.... +....+..+...++.+.+++++. .+..+++++|++++
T Consensus 1 ~~~~~~~~~---~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~---~~~~iv~~sg~~a~ 74 (349)
T cd06454 1 KKVLNFCSN---DYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHG---KEAALVFSSGYAAN 74 (349)
T ss_pred CCceecccC---CccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhC---CCCEEEeccHHHHH
Confidence 468999877 789985 999999999999874332 11223467788899999999873 23567788999999
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHH
Q 013204 109 DTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188 (447)
Q Consensus 109 ~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (447)
..+++.+. .+++.|++.++. |..........+.... .++..
T Consensus 75 ~~~~~~~~--------~~gd~Vl~~~~~-~~~~~~~~~~~g~~~~------------~~~~~------------------ 115 (349)
T cd06454 75 DGVLSTLA--------GKGDLIISDSLN-HASIIDGIRLSGAKKR------------IFKHN------------------ 115 (349)
T ss_pred HHHHHHhc--------CCCCEEEEehhh-hHHHHHHHHHcCCceE------------EecCC------------------
Confidence 98887653 234667776554 4443333222222110 01100
Q ss_pred HHHHHHHHHHhhC-CCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-ccccC---C
Q 013204 189 LANNLEDLILKEG-PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-GCDKY---S 263 (447)
Q Consensus 189 ~~~~le~~l~~~~-~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~~~~~---~ 263 (447)
+.+++++++.... +.++++|+++++++.+|...+ +++|.++|++||+++|+||+|. +|..+... ..... .
T Consensus 116 ~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~----~~~i~~~~~~~~~~livD~a~~-~g~~~~~~~~~~~~~~~~ 190 (349)
T cd06454 116 DMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAP----LPELVDLAKKYGAILFVDEAHS-VGVYGPHGRGVEEFGGLT 190 (349)
T ss_pred CHHHHHHHHHHhhccCCCeEEEEeccccCCCCccC----HHHHHHHHHHcCCEEEEEcccc-ccccCCCCCChhhhcccc
Confidence 1256777776432 245678889998888887765 8999999999999999999986 44333211 11111 1
Q ss_pred CCCCee--eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh-hcHHHHHHHH
Q 013204 264 IKPDLV--SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE-RNIVEQVNKI 340 (447)
Q Consensus 264 ~~~d~v--~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-~~~~~~~~~~ 340 (447)
...|++ +++|.++. +.|+++.++++++.+..... . ...+.+.++..++++.++++.+.+ ++..+++.++
T Consensus 191 ~~~~i~~~s~sK~~~~---~gG~i~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 262 (349)
T cd06454 191 DDVDIIMGTLGKAFGA---VGGYIAGSKELIDYLRSYAR---G--FIFSTSLPPAVAAAALAALEVLQGGPERRERLQEN 262 (349)
T ss_pred ccCcEEEeechhhhcc---cCCEEECCHHHHHHHHHhch---h--hhccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 235665 57898875 34788889998887753211 1 112335667778888888887654 4567788888
Q ss_pred HHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee--------CCEEEEe
Q 013204 341 APKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS--------GDNIMMS 412 (447)
Q Consensus 341 ~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--------g~~iR~~ 412 (447)
.+.+++.|+++ +..... ...+.+..+.+.+.. ....+.+.|+++||.+.+. ++.+|++
T Consensus 263 ~~~l~~~l~~~-g~~~~~--~~~~~~~~~~~~~~~-----------~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~ 328 (349)
T cd06454 263 VRYLRRGLKEL-GFPVGG--SPSHIIPPLIGDDPA-----------KAVAFSDALLERGIYVQAIRYPTVPRGTARLRIS 328 (349)
T ss_pred HHHHHHHHHhc-CCcccC--CCCCcEEEEeCCChH-----------HHHHHHHHHHhCCceEEEecCCccCCCCCeEEEE
Confidence 88888888776 222211 111222222221111 2456888999999998753 2579999
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q 013204 413 PPFIMSPEEVDELISKYGKA 432 (447)
Q Consensus 413 ~~~~~t~e~i~~~~~~l~~~ 432 (447)
++..++++++++++++|+++
T Consensus 329 ~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 329 LSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred EeCCCCHHHHHHHHHHHHHh
Confidence 99889999999999999764
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.5e-23 Score=200.49 Aligned_cols=343 Identities=14% Similarity=0.150 Sum_probs=214.6
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDT 110 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~ 110 (447)
+++.++++..+. +.++ .+|.+.+++.+.+...... .........++.+.+++.+. .+.+++++++|+++|+..
T Consensus 26 ~~~~~i~l~~~~--~~~~-~~~~~~~a~~~~~~~~~~~---~y~~~~g~~~lr~~ia~~l~-~~~~~v~~~~g~t~al~~ 98 (380)
T PRK06225 26 KDKEMIWMGQNT--NHLG-PHEEVREAMIRCIEEGEYC---KYPPPEGFPELRELILKDLG-LDDDEALITAGATESLYL 98 (380)
T ss_pred hcCCeEEccCCC--CCCC-CCHHHHHHHHHHHhcCCCC---CCCCCcchHHHHHHHHHhcC-CCCCcEEEeCCHHHHHHH
Confidence 356788887653 4565 6899999999988653211 01223346778888888873 456789999999999999
Q ss_pred HHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHH
Q 013204 111 QVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190 (447)
Q Consensus 111 Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (447)
+++.+. ..++.|++.++.|+........ .|.... .++.... + +.+ ..+.
T Consensus 99 ~~~~~~--------~~gd~vl~~~p~y~~~~~~~~~-~g~~~~------------~v~~~~~-----~----~~~-~~d~ 147 (380)
T PRK06225 99 VMRAFL--------SPGDNAVTPDPGYLIIDNFASR-FGAEVI------------EVPIYSE-----E----CNY-KLTP 147 (380)
T ss_pred HHHHhc--------CCCCEEEEcCCCCcchHHHHHH-hCceEE------------eeccccc-----c----CCc-cCCH
Confidence 998763 2346799999999865432222 221110 1111000 0 000 0113
Q ss_pred HHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccC-CCCCCee
Q 013204 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKY-SIKPDLV 269 (447)
Q Consensus 191 ~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~-~~~~d~v 269 (447)
+++++.+. ++..++++++|.|++ | ...+.+.+++|.++|++||+++|+||+|.+|.. +........ ....++.
T Consensus 148 ~~l~~~~~---~~~~~v~l~~p~Npt-G-~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~i~~~ 221 (380)
T PRK06225 148 ELVKENMD---ENTRLIYLIDPLNPL-G-SSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAR-EHTLAAEYAPEHTVTSY 221 (380)
T ss_pred HHHHhhcC---CCceEEEEeCCCCCC-C-cCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhc-cCCchhhcCCCCEEEEe
Confidence 55665553 333344556676655 4 345778899999999999999999999987632 221111110 1112345
Q ss_pred eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHh
Q 013204 270 SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE--RNIVEQVNKIAPKFQDG 347 (447)
Q Consensus 270 ~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~--~~~~~~~~~~~~~l~~~ 347 (447)
+|||.++.+++++|++++++++++.+... ...+++.+.+++.++.++++.... +...+..+++.+.+.+.
T Consensus 222 s~SK~~g~~G~RiG~i~~~~~l~~~~~~~--------~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 293 (380)
T PRK06225 222 SFSKIFGMAGLRIGAVVATPDLIEVVKSI--------VINDLGTNVIAQEAAIAGLKVKDEWIDRIRRTTFKNQKLIKEA 293 (380)
T ss_pred echhhcCCccceeEEEecCHHHHHHHHHH--------HhcccCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 78999974448999999999998887632 123566677888777777753211 12223334444555566
Q ss_pred HhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-------C-CEEEEecCCCCCH
Q 013204 348 VKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-------G-DNIMMSPPFIMSP 419 (447)
Q Consensus 348 L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------g-~~iR~~~~~~~t~ 419 (447)
|+++..... ......|.++.+.+..... ....+.+.|.++||.+.++ + +.+|++ +..++
T Consensus 294 L~~~~~~~~-~~~~~~g~~~~~~~~~~~~----------~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s--~~~~~ 360 (380)
T PRK06225 294 VDEIEGVFL-PVYPSHGNMMVIDISEAGI----------DPEDLVEYLLERKIFVRQGTYTSKRFGDRYIRVS--FSIPR 360 (380)
T ss_pred HHhCcCCcc-ccCCCCCeEEEEEcccccC----------CHHHHHHHHHHCCEEEcCCcccCcCCCCceEEEE--eCCCH
Confidence 665422211 1233456677777653211 1345888889999998864 1 369999 56789
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013204 420 EEVDELISKYGKALKATEE 438 (447)
Q Consensus 420 e~i~~~~~~l~~~l~~~~~ 438 (447)
+++++++++|+++++++|+
T Consensus 361 e~l~~~~~~l~~~~~~~~~ 379 (380)
T PRK06225 361 EQVEVFCEEFPDVVETLRT 379 (380)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 9999999999999998764
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.9e-24 Score=196.80 Aligned_cols=345 Identities=19% Similarity=0.241 Sum_probs=222.2
Q ss_pred EEEecCCccccccCCCCCHHHHHHHHHHHhcC-CcccccC--cCCChHHH-HHHHHHHHhcCcCCCCeEEEeCChhhHHH
Q 013204 34 KYLDSLAGLWCTALGGSEPRLVAAATAQLNTL-PFYHSFW--NRTTKPSL-DLAKELLEMFTASKMAKVFFTNSGSEAND 109 (447)
Q Consensus 34 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~~~--~~~~~~~~-~l~~~l~~~~~~~~~~~v~~~~sGseA~~ 109 (447)
.|+|..+.. + -+|+++++|....... +..++.. +....... +-.+.+++.+ +.++.+++||++|||+|.
T Consensus 3 iYlD~~ATT---p---~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~ll-ga~~~eIiFTSG~TEsnN 75 (386)
T COG1104 3 IYLDNAATT---P---VDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLL-GADPEEIIFTSGATESNN 75 (386)
T ss_pred ccccccccC---C---CCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHh-CCCCCeEEEecCCcHHHH
Confidence 589987763 2 5799999999998764 2212211 22222333 3444555554 456689999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (447)
.||+.+....+.. .+++++|+ +..-|-.....+..- ...++. +..+++. ..+..+
T Consensus 76 laI~g~~~a~~~~--~~~~HIIt-s~iEH~aVl~~~~~L----e~~g~~-----Vtyl~V~-------------~~G~v~ 130 (386)
T COG1104 76 LAIKGAALAYRNA--QKGKHIIT-SAIEHPAVLNTCRYL----ERQGFE-----VTYLPVD-------------SNGLVD 130 (386)
T ss_pred HHHHhhHHhhhcc--cCCCeEEE-cccccHHHHHHHHHH----HhcCCe-----EEEeCCC-------------CCCeEc
Confidence 9999654332221 23345554 566676654433211 011222 1122221 122333
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV 269 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v 269 (447)
+++|++.+. +++.+|.+..+|++.|++.| +++|.++|+++|+++++|.||+ +|+.. .+...+..|++
T Consensus 131 ~e~L~~al~----~~T~LVSim~aNnE~G~IQp----I~ei~~i~k~~~i~fHvDAvQa-~Gkip----i~~~~~~vD~l 197 (386)
T COG1104 131 LEQLEEALR----PDTILVSIMHANNETGTIQP----IAEIGEICKERGILFHVDAVQA-VGKIP----IDLEELGVDLL 197 (386)
T ss_pred HHHHHHhcC----CCceEEEEEecccCeeeccc----HHHHHHHHHHcCCeEEEehhhh-cCcee----ccccccCcceE
Confidence 588888886 45779999999999999999 9999999999999999999998 87763 33333448999
Q ss_pred eecc-cCCCcccceeEEEeChhH-HHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHH
Q 013204 270 SFAK-ALSSAYMPIGAILVSPEV-SEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE--RNIVEQVNKIAPKFQ 345 (447)
Q Consensus 270 ~~sK-~l~gg~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~--~~~~~~~~~~~~~l~ 345 (447)
+||- .++|+ .++|+++.++.+ ...+..+..+.+.+..+ +.|..++++.-+++++..+ +....++.+++++|.
T Consensus 198 s~SaHK~~Gp-kGiGaLyv~~~~~~~p~i~GGgQE~g~RsG---Tenv~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~ 273 (386)
T COG1104 198 SFSAHKFGGP-KGIGALYVRPGVRLEPLIHGGGQERGLRSG---TENVPGIVGFGKAAEIAVEELEEENARLRKLRDRLE 273 (386)
T ss_pred EeehhhccCC-CceEEEEECCCCccCceeccCcCCCCCCCC---CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9986 67776 799999987765 33333333333333322 2344455544455554332 345577788888888
Q ss_pred HhHhhc-cCCCceee-EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee------------------
Q 013204 346 DGVKAF-SDSPIIGE-IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS------------------ 405 (447)
Q Consensus 346 ~~L~~l-~~~~~~~~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------------------ 405 (447)
+.|.+. +...+... .......+.+.|+.-. ++.+...|..+||.++.+
T Consensus 274 ~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv~------------gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG 341 (386)
T COG1104 274 DGLLEIIPDVYLNGDDEPRLPNILNFSFPGVE------------GESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMG 341 (386)
T ss_pred HHHHhcCCcEEEcCCcccCCCCeEEEEeCCCc------------HHHHHHhccccCeEEeccccccCCCCCccHHHHHcC
Confidence 888765 33222222 2333344455555432 445666777778888743
Q ss_pred ------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013204 406 ------GDNIMMSPPFIMSPEEVDELISKYGKALKATEER 439 (447)
Q Consensus 406 ------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 439 (447)
.+.|||+....+|++|++.+++.|.+.++++++.
T Consensus 342 ~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~~lr~~ 381 (386)
T COG1104 342 ISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKRLREL 381 (386)
T ss_pred CChHHhCccEEEEcCCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 1569999999999999999999999999998764
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-22 Score=183.45 Aligned_cols=329 Identities=12% Similarity=0.080 Sum_probs=226.8
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc-CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcc
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA-SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKK 128 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~ 128 (447)
.+|+|++|+.++++.+.++|+ ..+.+....+..+.++.+.. .++++++|+++.-.++..+|+..+ ..++
T Consensus 39 ~pp~i~~Al~~rvdhGvfGY~--~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T--------~~gd 108 (388)
T COG1168 39 TPPEIIEALRERVDHGVFGYP--YGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALT--------KPGD 108 (388)
T ss_pred CCHHHHHHHHHHHhcCCCCCC--CCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhC--------cCCC
Confidence 689999999999999877665 33555677777888877654 577899999999999999999875 4468
Q ss_pred eEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCc-EEE
Q 013204 129 KFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPET-IAA 207 (447)
Q Consensus 129 ~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~-~a~ 207 (447)
.|++.+|.|+.... .....+......++.... .-+. .++++||+.+.. .+ ...
T Consensus 109 ~Vvi~tPvY~PF~~-~i~~n~R~~i~~pL~~~~-~~y~---------------------iD~~~LE~~~~~---~~vkl~ 162 (388)
T COG1168 109 GVVIQTPVYPPFYN-AIKLNGRKVIENPLVEDD-GRYE---------------------IDFDALEKAFVD---ERVKLF 162 (388)
T ss_pred eeEecCCCchHHHH-HHhhcCcEEEeccccccC-CcEE---------------------ecHHHHHHHHhc---CCccEE
Confidence 99999999987643 233344333222221110 0111 125889988874 33 456
Q ss_pred EEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc-ccccccCCCC-CC--eee--ecccCCCcccc
Q 013204 208 FIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT-MFGCDKYSIK-PD--LVS--FAKALSSAYMP 281 (447)
Q Consensus 208 vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~-~~~~~~~~~~-~d--~v~--~sK~l~gg~~~ 281 (447)
|+|+|.|+.| .+++.++|.+|.++|++||+++|+||+|+.+...|. .+.+...... .| +++ -||++.-+++.
T Consensus 163 iLCnPHNP~G--rvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~ 240 (388)
T COG1168 163 ILCNPHNPTG--RVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLK 240 (388)
T ss_pred EEeCCCCCCC--ccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhh
Confidence 6677777766 789999999999999999999999999999977773 3322211110 12 223 36988765588
Q ss_pred eeEEEe-ChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHhHhhccCCCcee
Q 013204 282 IGAILV-SPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE--RNIVEQVNKIAPKFQDGVKAFSDSPIIG 358 (447)
Q Consensus 282 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~ 358 (447)
.++++. ++++...+... +........|.+++.|..++.+.-+. +++.+.++.+.+++.+.+++. .|.+.
T Consensus 241 ~a~~Ii~n~~lr~~~~~~------l~~~~~~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~~--~P~v~ 312 (388)
T COG1168 241 CAYIIISNRELRAKFLKR------LKRNGLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKH--LPGVK 312 (388)
T ss_pred heeEEecCHHHHHHHHHH------HHHhcCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhh--CCCcE
Confidence 888775 56665555431 11223556788999999998875432 456778888888888888663 35566
Q ss_pred eEeeeeeEE-EEEeecCCCCCCCCCCCcchHHHHHHHHHHc-CceEEee------C-CEEEEecCCCCCHHHHHHHHHHH
Q 013204 359 EIRGTGLIL-GTEFADNKSPNEPFPPEWGIGAYFGAQCEKH-GMLVRVS------G-DNIMMSPPFIMSPEEVDELISKY 429 (447)
Q Consensus 359 ~~~~~g~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~------g-~~iR~~~~~~~t~e~i~~~~~~l 429 (447)
....+|+++ ++++..-..+ .+.+.+.|+++ +|.+.++ | +.+|++ +.++.+-+++++++|
T Consensus 313 v~~p~gTYL~WLD~r~l~l~----------d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN--~acpr~~L~eal~ri 380 (388)
T COG1168 313 VTEPQGTYLAWLDCRELGLD----------DSELAEFLLEEAKVALSPGSTFGEEGSGFVRLN--FACPRAILEEALERL 380 (388)
T ss_pred EecCCCceeeeeeccccCCC----------hHHHHHHHHHhhcEeccCCCccCcCCCceEEEe--cCCCHHHHHHHHHHH
Confidence 677888865 5777653321 13456666543 4555433 3 459999 899999999999999
Q ss_pred HHHHHHH
Q 013204 430 GKALKAT 436 (447)
Q Consensus 430 ~~~l~~~ 436 (447)
+++++.+
T Consensus 381 ~~al~~~ 387 (388)
T COG1168 381 KRALKKR 387 (388)
T ss_pred HHHHhcc
Confidence 9888753
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-22 Score=195.53 Aligned_cols=325 Identities=16% Similarity=0.154 Sum_probs=203.1
Q ss_pred EEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhc----C-cCCCCeEEEeCChhhHH
Q 013204 34 KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMF----T-ASKMAKVFFTNSGSEAN 108 (447)
Q Consensus 34 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~-~~~~~~v~~~~sGseA~ 108 (447)
..+|++.+. ++++ .+|.+++++.+.+...... ....+.....+|.+.+++++ . ...+++|++++|+++++
T Consensus 27 ~~i~l~~~~--~~~~-~~~~~~~al~~~l~~~~~~--~~~Y~~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l 101 (368)
T PRK03317 27 VPVRLNTNE--NPYP-PSPALVADIAEAVAEAAAG--LNRYPDRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEIL 101 (368)
T ss_pred ceeEecCCC--CCCC-CCHHHHHHHHHHHhhhhhh--hccCCCCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHH
Confidence 468887664 5565 7889999999887531100 00112222345555555554 2 24678999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHH
Q 013204 109 DTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188 (447)
Q Consensus 109 ~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (447)
..+++... ..++.|++.+|+|++........+ .... .++..+.+. .
T Consensus 102 ~~~~~~~~--------~~gd~v~v~~P~y~~~~~~~~~~g-~~~~------------~~~~~~~~~-------------~ 147 (368)
T PRK03317 102 QQLLQAFG--------GPGRTALGFVPSYSMHPIIARGTH-TEWV------------EGPRAADFT-------------L 147 (368)
T ss_pred HHHHHHhc--------CCCCEEEEeCCChHHHHHHHHhcC-CeeE------------EcccCCCCC-------------C
Confidence 99998764 334779999999988754433211 1110 011000000 0
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCe
Q 013204 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDL 268 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~ 268 (447)
+++++++.+... ++.++++++.++..|.+.+ .+++.++|+.+++++|+||+|++|++.|........+..|++
T Consensus 148 d~~~l~~~~~~~---~~~~i~l~~p~NPtG~~~~----~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~ 220 (368)
T PRK03317 148 DVDAAVAAIAEH---RPDVVFLTSPNNPTGTALP----LDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRL 220 (368)
T ss_pred CHHHHHHHHhcc---CCCEEEEeCCCCCCCCCCC----HHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCE
Confidence 136677766532 2233444444555665555 667777777778999999999998766644334443445676
Q ss_pred e---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHH
Q 013204 269 V---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE-RNIVEQVNKIAPKF 344 (447)
Q Consensus 269 v---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-~~~~~~~~~~~~~l 344 (447)
+ +|||.++.+++|+|++++++++++.+... . .++..++++++++.++|+..+. .+..++++++.+.+
T Consensus 221 i~~~SfSK~~g~~GlRiG~~~~~~~~~~~l~~~-------~--~~~~~s~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l 291 (368)
T PRK03317 221 VVSRTMSKAFAFAGGRLGYLAAAPAVVDALRLV-------R--LPYHLSAVTQAAARAALRHADELLASVAALRAERDRV 291 (368)
T ss_pred EEEEechhhhccchhhhhhhhCCHHHHHHHHhc-------C--CCCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence 6 78999984338999999999999988631 1 3567788899888888864321 11223334444445
Q ss_pred HHhHhhccCCCceeeEeeeeeEEEE-EeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC--CEEEEecCCCCCHHH
Q 013204 345 QDGVKAFSDSPIIGEIRGTGLILGT-EFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--DNIMMSPPFIMSPEE 421 (447)
Q Consensus 345 ~~~L~~l~~~~~~~~~~~~g~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g--~~iR~~~~~~~t~e~ 421 (447)
.+.|++. ++ ....+.|.++.+ .+. ....+.+.|+++||.+.+.+ +.+|++ ..++++
T Consensus 292 ~~~L~~~---g~-~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~Gv~v~~~~~~~~iRi~---~~~~~~ 350 (368)
T PRK03317 292 VAWLREL---GL-RVAPSDANFVLFGRFA--------------DRHAVWQGLLDRGVLIRDVGIPGWLRVT---IGTPEE 350 (368)
T ss_pred HHHHHHC---CC-EeCCCCCcEEEEeccC--------------CHHHHHHHHHHCCEEEEeCCCCCeEEEe---cCCHHH
Confidence 5555443 22 222344554333 221 13458888999999998765 579999 347889
Q ss_pred HHHHHHHHHHHHH
Q 013204 422 VDELISKYGKALK 434 (447)
Q Consensus 422 i~~~~~~l~~~l~ 434 (447)
+++++++|+++++
T Consensus 351 ~~~~~~~l~~~~~ 363 (368)
T PRK03317 351 NDAFLAALAEVLA 363 (368)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988874
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-22 Score=189.14 Aligned_cols=322 Identities=18% Similarity=0.262 Sum_probs=223.9
Q ss_pred EEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHH
Q 013204 34 KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVK 113 (447)
Q Consensus 34 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~ 113 (447)
..+|++++- +++| .+|++.+++.+.++....| |.....++.+.+++.+.....+.|+.++|.+|.+...++
T Consensus 23 ~~i~LssNe--nP~g-p~~~~~~~~~~~~~~~~rY------Pd~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~ 93 (356)
T COG0079 23 GIIKLSSNE--NPYG-PPPKVIEAIRAALDKLNRY------PDPDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVR 93 (356)
T ss_pred cceeecCCC--CCCC-CCHHHHHHHHHHHHhhccC------CCCcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHH
Confidence 689998876 8888 4689999998888754332 455678888999888743567799999999999999999
Q ss_pred HHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHH
Q 013204 114 LVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNL 193 (447)
Q Consensus 114 ~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 193 (447)
+.. .+++.|++..|+|.-+...+...+.... .++..+ |. .++
T Consensus 94 ~~~--------~~gd~vl~~~Ptf~~Y~~~a~~~g~~~~-------------~v~~~~-~~----------------~d~ 135 (356)
T COG0079 94 AFV--------EPGDTVLIPEPTFSMYEIAAQLAGAEVV-------------KVPLKE-FR----------------LDL 135 (356)
T ss_pred Hhh--------cCCCEEEEcCCChHHHHHHHHhcCCeEE-------------Eecccc-cc----------------cCH
Confidence 875 3347899999999777655555443221 122211 11 233
Q ss_pred HHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee---e
Q 013204 194 EDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV---S 270 (447)
Q Consensus 194 e~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v---~ 270 (447)
+.++....++...+++++|.|++| ...+.+.++++.+.|.+ +.+||+||+|..|.. .-......-.++++ |
T Consensus 136 ~~~~~~~~~~~~lv~i~nPNNPTG--~~~~~~~l~~l~~~~~~-~~~vVvDEAY~eF~~---~~~~~l~~~~~nlivlRT 209 (356)
T COG0079 136 DAILAAIRDKTKLVFLCNPNNPTG--TLLPREELRALLEALPE-GGLVVIDEAYIEFSP---ESSLELLKYPPNLIVLRT 209 (356)
T ss_pred HHHHHhhhcCCCEEEEeCCCCCCC--CCCCHHHHHHHHHhCCC-CcEEEEeCchhhcCC---chhhhhccCCCCEEEEEe
Confidence 344333222334567777888887 34567888888888888 999999999998854 11122222123344 7
Q ss_pred ecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHhHh
Q 013204 271 FAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVEQVNKIAPKFQDGVK 349 (447)
Q Consensus 271 ~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~~~~~~~~~l~~~L~ 349 (447)
|||+++-+++|+|++++++++++.+... ...|..+.++.+++.++++.-+ .++..+.+.+.++++.+.|+
T Consensus 210 fSKa~gLAGlRlGy~ia~~~~i~~l~~v---------r~p~~v~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~ 280 (356)
T COG0079 210 FSKAFGLAGLRVGYAIANPELIAALNKV---------RPPFNVSSPALAAAIAALRDADYLEESVERIREERERLYAALK 280 (356)
T ss_pred cHHhhhcchhceeeccCCHHHHHHHHHh---------cCCCCCCHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998876559999999999999999742 2477778889998888886431 12334555556666666666
Q ss_pred hccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC------CEEEEecCCCCCHHHHH
Q 013204 350 AFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG------DNIMMSPPFIMSPEEVD 423 (447)
Q Consensus 350 ~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g------~~iR~~~~~~~t~e~i~ 423 (447)
.+ ++....++.+.|+.+.+.... ...+.+.|+++||+++.++ +.+|++ .-|+|+.+
T Consensus 281 ~~---~~~~v~pS~aNFvlv~~~~~~------------~~~l~~~L~~~giivR~~~~~~~~~~~lRit---vgt~een~ 342 (356)
T COG0079 281 AL---GLFGVFPSQANFVLVRVPDAE------------AAALAEALLKKGILVRDCSSVGLLPGYLRIT---VGTPEEND 342 (356)
T ss_pred hC---CCCeecCCCCcEEEEECCCcc------------HHHHHHHHHHCCEEEEeCCCCCCCCCeEEEE---eCCHHHHH
Confidence 65 322233445777777765411 2347899999999999874 379999 67888889
Q ss_pred HHHHHHHHHHHH
Q 013204 424 ELISKYGKALKA 435 (447)
Q Consensus 424 ~~~~~l~~~l~~ 435 (447)
+++++|.++++.
T Consensus 343 ~ll~AL~~~~~~ 354 (356)
T COG0079 343 RLLAALREVLKG 354 (356)
T ss_pred HHHHHHHHHHhc
Confidence 999999988764
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.4e-22 Score=192.56 Aligned_cols=340 Identities=14% Similarity=0.121 Sum_probs=208.6
Q ss_pred EEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc-CCCC-eEEEeCChhhHHHHH
Q 013204 34 KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA-SKMA-KVFFTNSGSEANDTQ 111 (447)
Q Consensus 34 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~-~v~~~~sGseA~~~A 111 (447)
..++|..+. ..++ .++.+.+++.+.+......+....+..+....+++.+.+.+.. ..++ ++++++|+++|+..+
T Consensus 21 ~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~ 97 (378)
T PRK07682 21 GVISLGVGE--PDFV-TPWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVA 97 (378)
T ss_pred CeEEeCCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHH
Confidence 467876664 3344 4667888888877642222222233445555666666554321 2343 799999999999999
Q ss_pred HHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHH
Q 013204 112 VKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191 (447)
Q Consensus 112 l~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (447)
++.+. .+++.|++.+++|+.........+.... .++.... . .+ ..+++
T Consensus 98 ~~~l~--------~~gd~vl~~~p~y~~~~~~~~~~g~~~~-------------~~~~~~~-------~---~~-~~d~~ 145 (378)
T PRK07682 98 MRAII--------NPGDEVLIVEPSFVSYAPLVTLAGGVPV-------------PVATTLE-------N---EF-KVQPA 145 (378)
T ss_pred HHHhC--------CCCCEEEEeCCCchhhHHHHHHcCCEEE-------------EeecCCc-------c---CC-CCCHH
Confidence 88663 3457899999999876544333222111 0111000 0 00 01136
Q ss_pred HHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccc-cccCCCCCC---
Q 013204 192 NLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFG-CDKYSIKPD--- 267 (447)
Q Consensus 192 ~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~-~~~~~~~~d--- 267 (447)
++++.+. ++..+++++.|.|++| ...+.+.+++|.++|++|++++|+||+|.++...+.... ....+..+.
T Consensus 146 ~l~~~~~---~~~~~v~~~~p~NPtG--~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~ 220 (378)
T PRK07682 146 QIEAAIT---AKTKAILLCSPNNPTG--AVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTIL 220 (378)
T ss_pred HHHhhcC---cccEEEEEECCCCCcC--cCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEE
Confidence 6666553 2233444566655554 356788999999999999999999999998865443211 112222222
Q ss_pred eeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHHHHHHHHH
Q 013204 268 LVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQVNKIAPKFQ 345 (447)
Q Consensus 268 ~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~~~~~~l~ 345 (447)
+-+|||.++.+++|+|++++++++++.+... .....++.+.+++.++.++|+... -++..+.++++.+.+.
T Consensus 221 ~~S~SK~~~~~GlR~G~~~~~~~~i~~l~~~-------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~ 293 (378)
T PRK07682 221 ISGFSKGFAMTGWRLGFIAAPVYFSEAMLKI-------HQYSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFV 293 (378)
T ss_pred EecCcccccChhhhhhhhhcCHHHHHHHHHH-------HHhhccCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 3368999874338999999999999888632 112345567778887777775311 1234456666777777
Q ss_pred HhHhhccCCCceeeEeeeee-EEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEee-------CCEEEEecCCC
Q 013204 346 DGVKAFSDSPIIGEIRGTGL-ILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVS-------GDNIMMSPPFI 416 (447)
Q Consensus 346 ~~L~~l~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------g~~iR~~~~~~ 416 (447)
+.|+++ +.. ...+.|. ++.+.+..... ....+.+.++ ++||.+.++ .+.+|++ +.
T Consensus 294 ~~L~~~-~~~---~~~p~g~~~~~~~~~~~~~----------~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis--~~ 357 (378)
T PRK07682 294 TSFNEI-GLT---CHVPGGAFYAFPSISSTGL----------SSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCS--YA 357 (378)
T ss_pred HHHHHC-CCc---cCCCCeeEEEEEeccCCCC----------CHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEE--eC
Confidence 777765 211 2234444 34444432111 1345777765 789999875 2569999 55
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 013204 417 MSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 417 ~t~e~i~~~~~~l~~~l~~~ 436 (447)
.+++++++++++|+++++++
T Consensus 358 ~~~~~l~~~l~~l~~~l~~~ 377 (378)
T PRK07682 358 TSLEQLQEAMKRMKRFVENK 377 (378)
T ss_pred CCHHHHHHHHHHHHHHHhhc
Confidence 68999999999999988764
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=196.31 Aligned_cols=327 Identities=12% Similarity=0.135 Sum_probs=214.2
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDT 110 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~ 110 (447)
+++..+|++.|- +++| .+|++++++.+.+.....+ +.....+|.+.+++++ ..++++|++++|+++++..
T Consensus 27 ~~~~~i~l~~ne--n~~~-~~~~v~~a~~~~~~~~~~Y------p~~g~~~Lr~aia~~~-~~~~~~I~vt~Gs~e~i~~ 96 (366)
T PRK01533 27 GDHSFVKLASNE--NPFG-CSPRVLDELQKSWLDHALY------PDGGATTLRQTIANKL-HVKMEQVLCGSGLDEVIQI 96 (366)
T ss_pred CCCceEEeCCCC--CCCC-CCHHHHHHHHHHHHhcCcC------CCCCHHHHHHHHHHHh-CCCcceEEECCCHHHHHHH
Confidence 456889987764 6777 6889999998876543222 3334567888888876 4577899999999999999
Q ss_pred HHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHH
Q 013204 111 QVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190 (447)
Q Consensus 111 Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (447)
+++... ..++.|++.+|+|.++...+...+ ... ..++..+ +. .++
T Consensus 97 ~~~~l~--------~~gd~vlv~~P~y~~~~~~~~~~g-~~v------------~~v~~~~-~~-------------~d~ 141 (366)
T PRK01533 97 ISRAVL--------KAGDNIVTAGATFPQYRHHAIIEG-CEV------------KEVALNN-GV-------------YDL 141 (366)
T ss_pred HHHHhc--------CCCCEEEEcCCcHHHHHHHHHHcC-CEE------------EEeecCC-CC-------------cCH
Confidence 988763 234789999999988765443322 111 1111100 00 113
Q ss_pred HHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccc-cccccCCCCCCee
Q 013204 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTM-FGCDKYSIKPDLV 269 (447)
Q Consensus 191 ~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~-~~~~~~~~~~d~v 269 (447)
+++++.+. ++...++++.|.|++| ...+.+.+++|.++|++++ ++|+||+|..|...+.. .......-.+.++
T Consensus 142 ~~l~~~~~---~~~~~v~i~~P~NPTG--~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi 215 (366)
T PRK01533 142 DEISSVVD---NDTKIVWICNPNNPTG--TYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNIL 215 (366)
T ss_pred HHHHHHhC---cCCcEEEEeCCCCCCC--CCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEE
Confidence 66666554 2334455666655555 4557788999999998876 57779999876432211 1111111123333
Q ss_pred ---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHH
Q 013204 270 ---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVEQVNKIAPKFQ 345 (447)
Q Consensus 270 ---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~~~~~~~~~l~ 345 (447)
+|||.++.+++++|++++++++++.+... . .+++.+.+++.++.++|+.-+ .+...+..++..+++.
T Consensus 216 ~~~SfSK~~~l~GlRiG~~i~~~~~~~~l~~~-------~--~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~r~~~~ 286 (366)
T PRK01533 216 VLRTFSKAYGLASFRVGYAVGHEELIEKLNVV-------R--LPFNVSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYE 286 (366)
T ss_pred EEeCchHHhcChHHHHhHHhCCHHHHHHHHHh-------c--CCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 58999885449999999999999988631 1 246778888888888885211 1122333344444444
Q ss_pred HhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeCCEEEEecCCCCCHHHHHHH
Q 013204 346 DGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDEL 425 (447)
Q Consensus 346 ~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g~~iR~~~~~~~t~e~i~~~ 425 (447)
+.++.+ + +....+.|.++.+.+.+ ...+.+.|+++||.+++..+.+|++ ..+.++.+++
T Consensus 287 ~~l~~~---g-~~~~~~~~nf~~~~~~~--------------~~~~~~~l~~~GI~Vr~~~~~iRis---~~~~~~~~~l 345 (366)
T PRK01533 287 SFCKEN---E-IPFYQSQTNFIFLPVEN--------------GGEIYEACAHAGFIIRPFPNGVRIT---VGTREQNEGV 345 (366)
T ss_pred HHHHhC---C-CccCCCcCcEEEEeCCC--------------HHHHHHHHHHCCcEEccCCCceEEe---CCCHHHHHHH
Confidence 445443 2 12234567777776531 2357889999999999987789999 6799999999
Q ss_pred HHHHHHHHHHHHH
Q 013204 426 ISKYGKALKATEE 438 (447)
Q Consensus 426 ~~~l~~~l~~~~~ 438 (447)
+++|+++++..++
T Consensus 346 ~~al~~~~~~~~~ 358 (366)
T PRK01533 346 ISVLQQHFENKKR 358 (366)
T ss_pred HHHHHHHHHhccc
Confidence 9999998876654
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-22 Score=190.46 Aligned_cols=300 Identities=13% Similarity=0.083 Sum_probs=195.7
Q ss_pred cCCC-CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCC
Q 013204 46 ALGG-SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGR 124 (447)
Q Consensus 46 ~lG~-~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~ 124 (447)
+||. +||++.++..+.+++.. ++.+.+.++++++++++. .+++++++++||++||..++....
T Consensus 29 ylgl~~~~~~~~~~~~~~~~~~-------g~~~~~~~Le~~lA~~~g-~~~e~ilv~~gg~~a~~~~~~al~-------- 92 (346)
T TIGR03576 29 LTGLAGGFKIDEEDLELLETYV-------GPAIFEEKVQELGREHLG-GPEEKILVFNRTSSAILATILALE-------- 92 (346)
T ss_pred cccCCCChhHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHHcC-CCcceEEEECCHHHHHHHHHHHhC--------
Confidence 3443 79999999999998752 366889999999999973 455899999999999999998763
Q ss_pred CCcceEEEEcC--CCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCC
Q 013204 125 PNKKKFIARQK--SYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGP 202 (447)
Q Consensus 125 ~~~~~vi~~~~--~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~ 202 (447)
.+++.|++..+ .+|.+........+...+. +.+ +++++. .+
T Consensus 93 ~~gd~Vli~~~d~p~~~s~~~~~~l~ga~~~~--------------~~~------------------l~~l~~-----~~ 135 (346)
T TIGR03576 93 PPGRKVVHYLPEKPAHPSIPRSCKLAGAEYFE--------------SDE------------------LSELKK-----ID 135 (346)
T ss_pred CCCCEEEECCCCCCCchhHHHHHHHcCCEEec--------------cCC------------------HHHHhh-----Cc
Confidence 23466665322 3555544444333322100 000 122221 12
Q ss_pred CcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcc---ccccccccCCCCCCee--eecccCCC
Q 013204 203 ETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRL---GTMFGCDKYSIKPDLV--SFAKALSS 277 (447)
Q Consensus 203 ~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~---g~~~~~~~~~~~~d~v--~~sK~l~g 277 (447)
.+.+|++++. ++.|.+. +.+.|++|.++|++||+++|+||+|.. +.. |.. ....++ +|++ ++||+|+|
T Consensus 136 -~~~lIiitg~-s~~G~v~-~~~~L~~i~~la~~~~~~livDEAy~~-~~~~~~~~~-~~~~~~--~divv~s~SKalaG 208 (346)
T TIGR03576 136 -GTSLVVITGS-TMDLKVV-SEEDLKRVIKQAKSKEAIVLVDDASGA-RVRRLYGQP-PALDLG--ADLVVTSTDKLMDG 208 (346)
T ss_pred -CceEEEEECC-CCCCccc-CHHHHHHHHHHHHHcCCEEEEECCccc-cccccCCCC-CHHHcC--CcEEEeccchhccc
Confidence 3456677664 6666554 467799999999999999999999973 222 221 112223 4554 68998866
Q ss_pred cccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCce
Q 013204 278 AYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPII 357 (447)
Q Consensus 278 g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~ 357 (447)
+++|++++++++++.+... .....++.++++++++.++|+....+...+.++++.+.+++.++++ .+.
T Consensus 209 --~r~G~v~~~~~li~~l~~~-------~~~~~~s~~~~~~~aa~~aL~~~~~~~~~~~l~~r~~~~~~~l~~~---~~~ 276 (346)
T TIGR03576 209 --PRGGLLAGRKELVDKIKSV-------GEQFGLEAQAPLLAAVVRALEEFELSRIRDAFKRKEEVYLRLFDKL---NVE 276 (346)
T ss_pred --cceEEEEeCHHHHHHHHHh-------hcCcccCccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhC---CCC
Confidence 6899999999999988742 1222334577788889999986544455667777777777766654 211
Q ss_pred eeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee------CCEEEEecCCCCCHH---HHHHHHHH
Q 013204 358 GEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS------GDNIMMSPPFIMSPE---EVDELISK 428 (447)
Q Consensus 358 ~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------g~~iR~~~~~~~t~e---~i~~~~~~ 428 (447)
+..+.++.+++.... ......+.|.++||++.++ .+.+||+ +..+++ +++.++++
T Consensus 277 ---~~~~~f~~~~~~~~~-----------~~~~~~~ll~~~gV~v~~~~~f~~~~~~vRis--~~~~~~~~~~~~~~~~a 340 (346)
T TIGR03576 277 ---RTPTGFVIKGVEEEK-----------LIEIGLDLLRNYGIITITAVGMPGASKTLRFD--LAAKDAERIGDDYLVEA 340 (346)
T ss_pred ---cCCCeEEEEeCCCCC-----------HHHHHHHHHHhCCEEEeCCcccCCCCCeEEEE--EecChHHhcCHHHHHHH
Confidence 112335555553211 0234556677899999984 2579999 555554 79999999
Q ss_pred HHHHH
Q 013204 429 YGKAL 433 (447)
Q Consensus 429 l~~~l 433 (447)
|++.+
T Consensus 341 l~~~~ 345 (346)
T TIGR03576 341 VKDSL 345 (346)
T ss_pred HHhcc
Confidence 98765
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-22 Score=193.72 Aligned_cols=336 Identities=14% Similarity=0.131 Sum_probs=204.4
Q ss_pred EeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhH
Q 013204 28 YDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEA 107 (447)
Q Consensus 28 ~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA 107 (447)
++..|..++++..+ -+.-..++.+ +++.+++.+....++. .....+|.+.+++++...++++|++++|+++|
T Consensus 21 ~~~~~~~~~~~~~~---e~~~~~~~~~-~~~~~~~~~~~~~Y~~----~~G~~~lr~~ia~~~~~~~~~~vi~t~G~~~a 92 (373)
T PRK07324 21 YDIAESCIDSLTLE---ELLALAGKNP-EAFYQELGQKKLTYGW----IEGSPEFKEAVASLYQNVKPENILQTNGATGA 92 (373)
T ss_pred cccccCCCCCCcHH---HHHhccCcch-HHHHHHHhcCCccCCC----CCCCHHHHHHHHHHhcCCChhhEEEcCChHHH
Confidence 34455555555433 1111245667 8888887764333322 22345677778877644567899999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 108 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 108 ~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
+..++..+. ..+++|++..|+|..........+.... .++......+.
T Consensus 93 l~~~~~~l~--------~~gd~Vl~~~P~y~~~~~~~~~~g~~v~-------------~v~~~~~~~~~----------- 140 (373)
T PRK07324 93 NFLVLYALV--------EPGDHVISVYPTYQQLYDIPESLGAEVD-------------YWQLKEENGWL----------- 140 (373)
T ss_pred HHHHHHHhC--------CCCCEEEEcCCCchhHHHHHHHcCCEEE-------------EEecccccCCC-----------
Confidence 999988663 3347899999999776544333222111 11111000000
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCC
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPD 267 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d 267 (447)
.+++++++.+. + ++++|++...++.+| ...+.+.+++|.++|++||+++|+||+|.++...+..... ....+.
T Consensus 141 ~d~~~l~~~~~---~-~~kli~i~~p~NPtG-~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~--~~~~~~ 213 (373)
T PRK07324 141 PDLDELRRLVR---P-NTKLICINNANNPTG-ALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSI--ADLYEK 213 (373)
T ss_pred CCHHHHHHhCC---C-CCcEEEEeCCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCCh--hhccCC
Confidence 01355665543 2 344555544444445 4567899999999999999999999999987544321111 111222
Q ss_pred ---eeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHH----HHHHH
Q 013204 268 ---LVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVE----QVNKI 340 (447)
Q Consensus 268 ---~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~----~~~~~ 340 (447)
+-+|||.++..++++|++++++++++.+... ....+++.+.+++.++..+++. .+.+.+ .++++
T Consensus 214 ~I~~~s~SK~~~~~G~RiG~i~~~~~li~~~~~~-------~~~~~~~~~~~~q~~a~~~l~~--~~~~l~~~~~~~~~~ 284 (373)
T PRK07324 214 GISTNSMSKTYSLPGIRVGWIAANEEVIDILRKY-------RDYTMICAGVFDDMLASLALEH--RDAILERNRKIVRTN 284 (373)
T ss_pred EEEEecchhhcCCccceeEEEecCHHHHHHHHHH-------hCcEEecCChHHHHHHHHHHcC--HHHHHHHHHHHHHHH
Confidence 2368998875449999999999998888642 2233556677777777776652 122233 33333
Q ss_pred HHHHHHhHhhccCCCceeeEeeeee-EEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEeeC-----CEEEEec
Q 013204 341 APKFQDGVKAFSDSPIIGEIRGTGL-ILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVSG-----DNIMMSP 413 (447)
Q Consensus 341 ~~~l~~~L~~l~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~g-----~~iR~~~ 413 (447)
.+.+.+.|++ .+.+..+.+.|. +..+.+.... ....+.++|+ +.||.+.|+. +.+|++
T Consensus 285 ~~~l~~~l~~---~~~~~~~~p~gg~~~~i~~~~~~-----------~~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis- 349 (373)
T PRK07324 285 LAILDEWVAK---EPRVSYVKPKAVSTSFVKLDVDM-----------PSEDFCLKLLKETGVLLVPGNRFDLEGHVRIG- 349 (373)
T ss_pred HHHHHHHHhc---CCCceEECCCceEEEEEEeCCCC-----------CHHHHHHHHHHhcCEEEECccccCCCCeEEEE-
Confidence 4444444433 333444545543 3444443221 1345777765 6799999873 579999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 013204 414 PFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 414 ~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+..+++.+.+++++|++++++
T Consensus 350 -~~~~~~~l~~~l~rl~~~l~~ 370 (373)
T PRK07324 350 -YCCDTETLKKGLKKLSEFLRE 370 (373)
T ss_pred -ecCCHHHHHHHHHHHHHHHHh
Confidence 667899999999999998865
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-21 Score=189.98 Aligned_cols=347 Identities=14% Similarity=0.082 Sum_probs=211.2
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCC-cccccCcCCChHHHHHHHHHHHhcCc-CCC-CeEEEeCChhhHHH
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP-FYHSFWNRTTKPSLDLAKELLEMFTA-SKM-AKVFFTNSGSEAND 109 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~-~~v~~~~sGseA~~ 109 (447)
+..+||..+.. ++++ .+|.+.+++.+.+.... ..|+...+..+....+++.+.+.+.. ..+ ++|++++|+++++.
T Consensus 39 ~~~i~l~~g~~-~~~~-p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~ 116 (405)
T PRK06207 39 GRPVDFSHGDV-DAHE-PTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALF 116 (405)
T ss_pred CCceecCCcCC-CCCC-CCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHH
Confidence 56778875532 2333 56788898888876431 22232233445566677777665432 345 78999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (447)
.+++... ..++.|++.+|+|.+........+.... .+++... + +.. .+ ..+
T Consensus 117 ~~~~~l~--------~~Gd~Vlv~~P~y~~~~~~~~~~g~~v~-------------~v~~~~~---~-~~~---~~-~~d 167 (405)
T PRK06207 117 LAVAATV--------ARGDKVAIVQPDYFANRKLVEFFEGEMV-------------PVQLDYL---S-ADK---RA-GLD 167 (405)
T ss_pred HHHHHhc--------CCCCEEEEeCCCchhHHHHHHHcCCEEE-------------EEecccc---C-ccc---CC-CcC
Confidence 9998764 3458899999999887644433222111 1111000 0 000 00 011
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccc-cccCCCCCC-
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFG-CDKYSIKPD- 267 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~-~~~~~~~~d- 267 (447)
+++|++.+.. +...++++.|.|++| ...+.+.+++|.++|++||+++|.||+|..+...|.... ...+...++
T Consensus 168 ~~~l~~~~~~---~~k~v~l~~P~NPTG--~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~ 242 (405)
T PRK06207 168 LDQLEEAFKA---GVRVFLFSNPNNPAG--VVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPEN 242 (405)
T ss_pred HHHHHHhhhh---cCeEEEECCCCCCCC--cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCc
Confidence 3667776642 233456777766665 455788999999999999999999999998755443221 111122222
Q ss_pred ee---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHHHHHH
Q 013204 268 LV---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQVNKIAP 342 (447)
Q Consensus 268 ~v---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~~~~~ 342 (447)
++ +|||.++-+++++|++++++++++.+... ........+.+++.++.++++.-. -++..+..+++.+
T Consensus 243 vi~i~SfSK~~~lpGlRiG~ii~~~~l~~~~~~~-------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~ 315 (405)
T PRK06207 243 VITIMGPSKTESLSGYRLGVAFGSPAIIDRMEKL-------QAIVSLRAAGYSQAVLRTWFSEPDGWMKDRIARHQAIRD 315 (405)
T ss_pred EEEEecchhhccCcccceEEEEcCHHHHHHHHHH-------HhHhccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 22 57999873338999999999998888632 111233445566666666664210 1122333444444
Q ss_pred HHHHhHhhccCCCceeeEee-eeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEeeC-------CEEEEec
Q 013204 343 KFQDGVKAFSDSPIIGEIRG-TGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVSG-------DNIMMSP 413 (447)
Q Consensus 343 ~l~~~L~~l~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~g-------~~iR~~~ 413 (447)
.+.+.|+++ +.+..... -|.++++.+..... ....+.+.|+ ++||.+.++. +.+|++
T Consensus 316 ~l~~~L~~~---~~~~~~~p~gg~fl~~~l~~~~~----------~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris- 381 (405)
T PRK06207 316 DLLRVLRGV---EGVFVRAPQAGSYLFPRLPRLAV----------SLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLN- 381 (405)
T ss_pred HHHHHHhcC---CCceecCCCeeEEEEEeCcccCC----------CHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEE-
Confidence 455555443 22222333 35677777653110 1345778886 6899999752 469999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 414 PFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 414 ~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
+..+++++++++++|.+.+++++
T Consensus 382 -~~~~~~~l~~al~rl~~~l~~~~ 404 (405)
T PRK06207 382 -FSQDHAAAVAAAERIAQLIERYR 404 (405)
T ss_pred -ecCCHHHHHHHHHHHHHHHHHhh
Confidence 55689999999999999987654
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-22 Score=196.32 Aligned_cols=336 Identities=13% Similarity=0.062 Sum_probs=201.3
Q ss_pred CccccccCCCCCHHHHHHHHHHHhcCCccccc-----CcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHH
Q 013204 40 AGLWCTALGGSEPRLVAAATAQLNTLPFYHSF-----WNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKL 114 (447)
Q Consensus 40 ~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~ 114 (447)
.+.+....||++|++++++..+. .....+.. +.+..+...++++++++++. .+.++++++++|+++.+.++..
T Consensus 23 ~~l~~g~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g-~~~~~v~~~~~g~~~~~~~~~~ 100 (398)
T cd00613 23 SFLGSGTYKHNPPAVIKRNILEN-EFYTAYTPYQPEISQGRLQALFELQTMLCELTG-MDVANASLQDEATAAAEAAGLA 100 (398)
T ss_pred ccccccccCCcCcHHHHHHhccc-cCcccCCCCChhhhhhHHHHHHHHHHHHHHHHC-CCccceeccCchHHHHHHHHHH
Confidence 34445567999999998876665 22111221 22334566788888888863 3444788888788777777776
Q ss_pred HHHHHHhcCCC-CcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHH
Q 013204 115 VWYYNNALGRP-NKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNL 193 (447)
Q Consensus 115 ~~~~~~~~~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 193 (447)
++.. + +++.|+ +...+|+.+...+...+... + ..+..+++++.+ ..+++++
T Consensus 101 ~~~~------~~~gd~Vl-~~~~~h~~~~~~~~~~~~~~-----g---~~~~~v~~~~~~-------------~~d~~~l 152 (398)
T cd00613 101 AIRA------YHKRNKVL-VPDSAHPTNPAVARTRGEPL-----G---IEVVEVPSDEGG-------------TVDLEAL 152 (398)
T ss_pred HHhc------ccCCCEEE-EcCccCcchHHHHHHhcccC-----C---cEEEEeccCCCC-------------CcCHHHH
Confidence 6422 2 134555 45668888766655444211 0 011122221110 0113666
Q ss_pred HHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeee--e
Q 013204 194 EDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--F 271 (447)
Q Consensus 194 e~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~ 271 (447)
++.+. +++++|++++++ .+|.+. +++++|+++|++||+++|+|++|+.....+.. .. ..+|+++ +
T Consensus 153 ~~~i~----~~t~~viv~~~~-~~G~~~---~~l~~i~~la~~~g~~livD~~~~~~~~~~~~---~~--~~~d~~~~s~ 219 (398)
T cd00613 153 KEEVS----EEVAALMVQYPN-TLGVFE---DLIKEIADIAHSAGALVYVDGDNLNLTGLKPP---GE--YGADIVVGNL 219 (398)
T ss_pred HHhcC----CCeEEEEEECCC-CCceec---chHHHHHHHHHhcCCEEEEEeccccccCCCCh---HH--cCCCEEEeec
Confidence 66553 357888888876 456662 56899999999999999999988632111111 11 2478876 4
Q ss_pred cccC---CCcccceeEEEeChhHHHHhhhccC---------CC-----C------c--cCcCCCCCCcHHHHHHHHHHHH
Q 013204 272 AKAL---SSAYMPIGAILVSPEVSEVIHSQSN---------TL-----G------S--FSHGFTYSGHPVSCAVAIEALK 326 (447)
Q Consensus 272 sK~l---~gg~~~~g~~~~~~~~~~~~~~~~~---------~~-----~------~--~~~~~t~~~~~~~~~aa~a~l~ 326 (447)
+|.+ ++|++++|+++.++++++.+..... .. . . ....++++++++.+.++.++++
T Consensus 220 ~K~~~p~g~Ggp~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~ 299 (398)
T cd00613 220 QKTGVPHGGGGPGAGFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIV 299 (398)
T ss_pred cccCCCCCCCCCceeEEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHH
Confidence 5755 3345789999999888776521100 00 0 0 0112345566677777777676
Q ss_pred HHhhh---cHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEE
Q 013204 327 IYKER---NIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR 403 (447)
Q Consensus 327 ~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~ 403 (447)
.+..+ +..++.+++++++++.|+++........ .....+.+.+..... .....+.+.|+++|+++.
T Consensus 300 ~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~~~~~v~~~~~~~~~---------~~~~~~~~~L~~~gi~~~ 368 (398)
T cd00613 300 YLGPEGLKEIAERAHLNANYLAKRLKEVGGVLPFNG--PFFHEFVLRLPPLYG---------IRAEDLAKALIDGGFHAP 368 (398)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCC--CeeEEEEEEcCCcch---------HHHHHHHHhhhhcCcccc
Confidence 65443 3457888899999999987622111111 111122333322100 024568889999999886
Q ss_pred e----eCCEEEEecCCCCCHHHHHHHHHHH
Q 013204 404 V----SGDNIMMSPPFIMSPEEVDELISKY 429 (447)
Q Consensus 404 ~----~g~~iR~~~~~~~t~e~i~~~~~~l 429 (447)
. ..+.+|++|++.+|++|||++++.|
T Consensus 369 ~~~~~~~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 369 TMYLPVDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred ccccCCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence 5 3467999999999999999999864
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.1e-22 Score=192.06 Aligned_cols=326 Identities=16% Similarity=0.168 Sum_probs=206.2
Q ss_pred CCC-EEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHH
Q 013204 31 NGK-KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEAND 109 (447)
Q Consensus 31 dg~-~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~ 109 (447)
.|+ .++++..|. +++| .+|++.+++.+.......+ +.....+|.+.+++.+ ..+++++++++|+++++.
T Consensus 29 ~g~~~~~~l~~~~--~~~~-~~~~~~~a~~~~~~~~~~Y------~~~~~~~Lr~~ia~~~-~~~~~~I~it~G~~~~l~ 98 (369)
T PRK08153 29 RGRPFRARIGANE--SGFG-PSPSVIAAMREAAAEIWKY------GDPENHDLRHALAAHH-GVAPENIMVGEGIDGLLG 98 (369)
T ss_pred cCCcceeEecCCC--CCCC-CCHHHHHHHHHHHHHhhcC------CCCccHHHHHHHHHHh-CCCHHHEEEcCCHHHHHH
Confidence 344 567887664 4566 6889999998876542211 1122567888888886 346679999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (447)
.+++... ..++.|++.+|+|.+........+... ..+++.+. .. +
T Consensus 99 ~~~~~~~--------~~gd~vlv~~p~y~~~~~~~~~~g~~~-------------~~vp~~~~------~~--------~ 143 (369)
T PRK08153 99 LIVRLYV--------EPGDPVVTSLGAYPTFNYHVAGFGGRL-------------VTVPYRDD------RE--------D 143 (369)
T ss_pred HHHHHhc--------CCCCEEEECCCcchHHHHHHHHcCCeE-------------EEeeCCCC------CC--------C
Confidence 9888653 335789999999987754333222111 11111000 00 1
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV 269 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v 269 (447)
++++++.+.. .+...+++++|.|++| ...+.+.+.++.++|+ ++++||+||+|..++..+...... ...++++
T Consensus 144 ~~~l~~~~~~--~~~~~i~l~~P~NPtG--~~~~~~~l~~l~~~~~-~~~~lI~DE~y~~~~~~~~~~~~~--~~~~~~i 216 (369)
T PRK08153 144 LDALLDAARR--ENAPLVYLANPDNPMG--SWHPAADIVAFIEALP-ETTLLVLDEAYCETAPAGAAPPID--TDDPNVI 216 (369)
T ss_pred HHHHHHHhcc--cCCcEEEEeCCCCCCC--CCCCHHHHHHHHHhCC-CCcEEEEeCchhhhcCcccchhhh--hcCCCEE
Confidence 2444433321 2223345567777774 3457778888888887 499999999999886544221111 1234433
Q ss_pred ---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHH----HHHHHHHH
Q 013204 270 ---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIV----EQVNKIAP 342 (447)
Q Consensus 270 ---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~----~~~~~~~~ 342 (447)
+|||.++.+++|+|++++++++++.+... . .+++.+++++.++.++|+ ++++. +.++++.+
T Consensus 217 ~~~SfSK~~g~~GlRiG~~v~~~~~~~~l~~~-------~--~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~ 284 (369)
T PRK08153 217 RMRTFSKAYGLAGARVGYAIGAPGTIKAFDKV-------R--NHFGMNRIAQAAALAALK---DQAYLAEVVGKIAAARD 284 (369)
T ss_pred EEecchHhccCcchheeeeecCHHHHHHHHHh-------h--cCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHH
Confidence 68999984449999999999999888632 1 245678889888888885 22333 33444444
Q ss_pred HHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEE-ee----CCEEEEecCCCC
Q 013204 343 KFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR-VS----GDNIMMSPPFIM 417 (447)
Q Consensus 343 ~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~-~~----g~~iR~~~~~~~ 417 (447)
.+.+.|++. ++ ...+..+.++.+++..+. ..+..+.++|+++||.+. +. .+.+|++ ..
T Consensus 285 ~~~~~L~~~---g~-~~~p~~~~f~~~~~~~~~----------~~a~~l~~~l~~~Gi~v~~p~~~~~~~~iRis---~~ 347 (369)
T PRK08153 285 RIAAIARAN---GL-TPLPSATNFVAIDCGRDG----------AFARAVLDGLIARDIFVRMPGVAPLDRCIRVS---CG 347 (369)
T ss_pred HHHHHHHHC---CC-ccCCCcCcEEEEECCCCc----------ccHHHHHHHHHHCCeEEeeCCCCCCCCeEEEe---cC
Confidence 444445443 22 122344556666553211 125678889999999996 32 1469999 34
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 013204 418 SPEEVDELISKYGKALKATE 437 (447)
Q Consensus 418 t~e~i~~~~~~l~~~l~~~~ 437 (447)
++++++.++++|++++...+
T Consensus 348 ~~~~~~~~~~al~~~~~~~~ 367 (369)
T PRK08153 348 PDEELDLFAEALPEALEAAR 367 (369)
T ss_pred CHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999987654
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-21 Score=187.96 Aligned_cols=339 Identities=16% Similarity=0.125 Sum_probs=208.1
Q ss_pred EEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhHHHHHH
Q 013204 34 KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEANDTQV 112 (447)
Q Consensus 34 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA~~~Al 112 (447)
.+++|..|.. .++ .++.+.+++.+.+.+....+....+..+....+++.+.+.+. ....+++++++|+++|+..++
T Consensus 25 ~~i~l~~g~~--~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~ 101 (382)
T PRK06108 25 GVLPLWFGES--DLP-TPDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAA 101 (382)
T ss_pred CeEEecCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHH
Confidence 5788877643 334 478999999988865432233223345556666666655543 246789999999999999998
Q ss_pred HHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHH
Q 013204 113 KLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 192 (447)
Q Consensus 113 ~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (447)
+... ..++.|++.+|.|..........+. .. ..++.... .. .+ ..++++
T Consensus 102 ~~l~--------~~gd~vl~~~p~y~~~~~~~~~~g~-~~------------~~v~~~~~------~~---~~-~~d~~~ 150 (382)
T PRK06108 102 QALV--------GPGDEVVAVTPLWPNLVAAPKILGA-RV------------VCVPLDFG------GG---GW-TLDLDR 150 (382)
T ss_pred HHhc--------CCCCEEEEeCCCccchHHHHHHCCC-EE------------EEeeCCCC------CC---Cc-cCCHHH
Confidence 8763 2347799999999766543332221 11 11111000 00 00 011366
Q ss_pred HHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcc-cccc-c-cccCCCCCCee
Q 013204 193 LEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRL-GTMF-G-CDKYSIKPDLV 269 (447)
Q Consensus 193 le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~-g~~~-~-~~~~~~~~d~v 269 (447)
+++.+. ++...+++..|.| .+|. ..+.+.+++|.++|++||+++|+||+|.++... +... . .........++
T Consensus 151 l~~~~~---~~~~~i~l~~p~N-PtG~-~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i 225 (382)
T PRK06108 151 LLAAIT---PRTRALFINSPNN-PTGW-TASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRII 225 (382)
T ss_pred HHHhcC---ccceEEEEECCCC-CCCc-ccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEE
Confidence 666553 2233344445544 4454 457899999999999999999999999977443 1111 1 11111112222
Q ss_pred ---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHHHHHHHH
Q 013204 270 ---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQVNKIAPKF 344 (447)
Q Consensus 270 ---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~~~~~~l 344 (447)
+|||.++.+++|+|++++++++++.+... ....+.+.+++++.++.++|+... -++..++++++.+.+
T Consensus 226 ~~~S~SK~~g~~G~RiG~~~~~~~~~~~~~~~-------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l 298 (382)
T PRK06108 226 FVNSFSKNWAMTGWRLGWLVAPPALGQVLEKL-------IEYNTSCVAQFVQRAAVAALDEGEDFVAELVARLRRSRDHL 298 (382)
T ss_pred EEeechhhccCcccceeeeeCCHHHHHHHHHH-------HHhcccCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 68998875448999999999998887632 122345567778877777775321 133456666666777
Q ss_pred HHhHhhccCCCceeeEeeee-eEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEee-------CCEEEEecCC
Q 013204 345 QDGVKAFSDSPIIGEIRGTG-LILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVS-------GDNIMMSPPF 415 (447)
Q Consensus 345 ~~~L~~l~~~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------g~~iR~~~~~ 415 (447)
.+.|+++.. +....+.| .++.+.+.... ....+.+.|+ ++||.+.++ .+.+|++...
T Consensus 299 ~~~L~~~~~---~~~~~p~~g~~~~~~l~~~~-----------~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~ 364 (382)
T PRK06108 299 VDALRALPG---VEVAKPDGAMYAFFRIPGVT-----------DSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR 364 (382)
T ss_pred HHHHHhCCC---CcccCCCeeEEEEEeCCCCC-----------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC
Confidence 777766522 22223344 44455654321 1345777775 579999764 2569999664
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 013204 416 IMSPEEVDELISKYGKALK 434 (447)
Q Consensus 416 ~~t~e~i~~~~~~l~~~l~ 434 (447)
+++++++++++|.++++
T Consensus 365 --~~~~l~~~l~~l~~~l~ 381 (382)
T PRK06108 365 --DPARLDEAVERLRRFLA 381 (382)
T ss_pred --CHHHHHHHHHHHHHHHh
Confidence 99999999999988764
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.8e-21 Score=186.42 Aligned_cols=339 Identities=12% Similarity=0.061 Sum_probs=207.3
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCC-eEEEeCChhhHHHH
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMA-KVFFTNSGSEANDT 110 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~-~v~~~~sGseA~~~ 110 (447)
...+||..|... +. .++.+.+++.+.+.+....|....+..+....+++.+.+.+. ..+++ ++++++|+++|+..
T Consensus 54 ~~~i~l~~G~P~--~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~ 130 (413)
T PLN00175 54 HGAINLGQGFPN--FD-GPDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAA 130 (413)
T ss_pred CCeEecCCCCCC--CC-CCHHHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHH
Confidence 457888777532 22 467888898888765322222222333444455555544432 12444 69999999999998
Q ss_pred HHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHH
Q 013204 111 QVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190 (447)
Q Consensus 111 Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (447)
++.... ..++.|++.+|.|..+.......+.... .++.... .+ ..++
T Consensus 131 ~~~~l~--------~~gd~Vlv~~P~y~~~~~~~~~~g~~~~-------------~v~~~~~-----------~~-~~~~ 177 (413)
T PLN00175 131 TILGLI--------NPGDEVILFAPFYDSYEATLSMAGAKIK-------------TVTLRPP-----------DF-AVPE 177 (413)
T ss_pred HHHHhC--------CCCCEEEEeCCCchhHHHHHHHcCCEEE-------------EEECCcc-----------cC-CCCH
Confidence 888553 3357899999999776544433222111 1111100 00 0013
Q ss_pred HHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccc-cccCCCCCCee
Q 013204 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFG-CDKYSIKPDLV 269 (447)
Q Consensus 191 ~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~-~~~~~~~~d~v 269 (447)
++|++.+. + ++++|++.+.++..| .+.+.+.+++|.++|++|++++|.||+|..+...+.... .+..+....++
T Consensus 178 ~~l~~~~~---~-~~k~i~i~~p~NPtG-~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi 252 (413)
T PLN00175 178 DELKAAFT---S-KTRAILINTPHNPTG-KMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTV 252 (413)
T ss_pred HHHHHhcC---c-CceEEEecCCCCCCC-cCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEE
Confidence 66776664 2 344555554444555 456789999999999999999999999987744332211 12222222233
Q ss_pred ---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHHHHHHHH
Q 013204 270 ---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQVNKIAPKF 344 (447)
Q Consensus 270 ---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~~~~~~l 344 (447)
+|||.++..++|+|++++++++++.+... ....+++.+.+.+.++.++|+..+ -++..+.++++.+.+
T Consensus 253 ~i~SfSK~~~~~G~RiG~~v~~~~l~~~l~~~-------~~~~~~~~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l 325 (413)
T PLN00175 253 TMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQA-------HSFLTFATATPMQWAAVAALRAPESYYEELKRDYSAKKDIL 325 (413)
T ss_pred EEecchhhccCcchheeeeEeCHHHHHHHHHH-------HhhccCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 58999985449999999999998887632 222356677778887777775311 133455666667777
Q ss_pred HHhHhhccCCCceeeEeeeee-EEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEee----------CCEEEEe
Q 013204 345 QDGVKAFSDSPIIGEIRGTGL-ILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVS----------GDNIMMS 412 (447)
Q Consensus 345 ~~~L~~l~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~----------g~~iR~~ 412 (447)
.+.|++. + +....+.|. ++.+.+...... ....+.+.|+ ++||.+.|+ .+.+|++
T Consensus 326 ~~~L~~~---g-~~~~~p~g~~f~~~~~~~~~~~---------~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls 392 (413)
T PLN00175 326 VEGLKEV---G-FKVYPSSGTYFVMVDHTPFGFE---------NDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFA 392 (413)
T ss_pred HHHHHHC---C-CeecCCCeeEEEEEeccccCCC---------CHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEE
Confidence 7777664 2 122334444 455554321100 1345777776 569998864 1369999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 013204 413 PPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 413 ~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
+..+++++++++++|.+.++
T Consensus 393 --~~~~~e~l~~~~~rL~~~~~ 412 (413)
T PLN00175 393 --FCKDEETLRAAVERMKTKLK 412 (413)
T ss_pred --EcCCHHHHHHHHHHHHHHHh
Confidence 55789999999999998765
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-21 Score=187.67 Aligned_cols=326 Identities=17% Similarity=0.202 Sum_probs=205.2
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDT 110 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~ 110 (447)
++++++||+++. +++| .+|.+.+++.+.......+ +.....++.+.+++++ +.+++++++++|+++++..
T Consensus 30 ~~~~~i~l~~~~--~~~~-~~~~~~~a~~~~~~~~~~y------~~~~~~~lr~~ia~~~-~~~~~~i~~t~G~~~~l~~ 99 (367)
T PRK02731 30 GIADIIKLASNE--NPLG-PSPKAIEAIRAAADELHRY------PDGSGFELKAALAEKF-GVDPERIILGNGSDEILEL 99 (367)
T ss_pred CCCceEEecCCC--CCCC-CCHHHHHHHHHHHHhhcCC------CCCcHHHHHHHHHHHh-CcCHHHEEEcCCHHHHHHH
Confidence 678899998875 4677 5788999999887653222 2222457888888886 3456789999999998887
Q ss_pred HHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHH
Q 013204 111 QVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190 (447)
Q Consensus 111 Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (447)
++.... ..++.|++.++.|..+...... .|... ..++..+ +. .++
T Consensus 100 ~~~~l~--------~~gd~vl~~~p~y~~~~~~~~~-~g~~~------------~~~~~~~-~~-------------~~~ 144 (367)
T PRK02731 100 LARAYL--------GPGDEVIYSEHGFAVYPIAAQA-VGAKP------------VEVPAKD-YG-------------HDL 144 (367)
T ss_pred HHHHhc--------CCCCEEEEecCCHHHHHHHHHH-cCCeE------------EEecccC-CC-------------CCH
Confidence 776552 2347899999999766543322 22111 1111100 00 013
Q ss_pred HHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc-ccccccCCCCCCee
Q 013204 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT-MFGCDKYSIKPDLV 269 (447)
Q Consensus 191 ~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~-~~~~~~~~~~~d~v 269 (447)
+++++.+. + ++.+|+++..++.+|.+. +.+.+.++++.|+ +|+++|+||+|..+...+. .......+..++++
T Consensus 145 ~~l~~~~~---~-~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i 218 (367)
T PRK02731 145 DAMLAAVT---P-RTRLVFIANPNNPTGTYL-PAEEVERFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVV 218 (367)
T ss_pred HHHHHHhC---C-CCcEEEEeCCCCCCCcCC-CHHHHHHHHHhCC-CCcEEEEECcHHHhccCcCcccHHHHHhhcCCEE
Confidence 66666654 2 344555555555566554 4455555555553 5999999999986644332 11222223334544
Q ss_pred ---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHH
Q 013204 270 ---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVEQVNKIAPKFQ 345 (447)
Q Consensus 270 ---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~~~~~~~~~l~ 345 (447)
+|||.++.+++|+|++++++++++.+... . .++..+.+++.++.+.++..+ -++..+..+++.+.++
T Consensus 219 ~~~S~SK~~g~~G~RiG~l~~~~~~~~~l~~~-------~--~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~ 289 (367)
T PRK02731 219 VTRTFSKAYGLAGLRVGYGIAPPEIIDALNRV-------R--QPFNVNSLALAAAVAALDDDAFVEKSRALNAEGMAWLT 289 (367)
T ss_pred EEeeehHhhcCcccceeeeeCCHHHHHHHHHc-------c--CCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 68998874448999999999999888631 1 234556778877777775211 1233445555556666
Q ss_pred HhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-----CEEEEecCCCCCHH
Q 013204 346 DGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-----DNIMMSPPFIMSPE 420 (447)
Q Consensus 346 ~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-----~~iR~~~~~~~t~e 420 (447)
+.|+++ +.. ...+.|.++.+.+.... ....+.++|.++||.+.++. +.+|+++ .+.+
T Consensus 290 ~~L~~~-g~~---~~~~~g~~~~i~~~~~~-----------~~~~~~~~L~~~gI~v~~~~~~~~~~~iRis~---~~~~ 351 (367)
T PRK02731 290 EFLAEL-GLE---YIPSVGNFILVDFDDGK-----------DAAEAYQALLKRGVIVRPVAGYGLPNALRITI---GTEE 351 (367)
T ss_pred HHHHHC-CCc---cCCCCceEEEEECCCCC-----------CHHHHHHHHHHCCEEEEeCCCCCCCCeEEEec---CCHH
Confidence 666654 221 12345777777763221 14568889999999999763 4699994 4789
Q ss_pred HHHHHHHHHHHHHH
Q 013204 421 EVDELISKYGKALK 434 (447)
Q Consensus 421 ~i~~~~~~l~~~l~ 434 (447)
++++++++|+++++
T Consensus 352 e~~~l~~aL~~~~~ 365 (367)
T PRK02731 352 ENRRFLAALKEFLA 365 (367)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-20 Score=184.26 Aligned_cols=350 Identities=13% Similarity=0.052 Sum_probs=211.4
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCC-cccccCcCCChHHHHHHHHHHHhcC-cCCCC-eEEEeCChhhH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP-FYHSFWNRTTKPSLDLAKELLEMFT-ASKMA-KVFFTNSGSEA 107 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~-~v~~~~sGseA 107 (447)
.|+.++||..+. ..++ .++.+.+++.+.+.... ..|+...+..+....+++.+.+.+. ...++ +|++++|++++
T Consensus 28 ~~~~~i~l~~~~--p~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~a 104 (405)
T PRK09148 28 AGADIIDLGMGN--PDLP-TPQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEG 104 (405)
T ss_pred cCCCeEEcCCCC--CCCC-CCHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHH
Confidence 467889997663 3344 36788888887764321 1122212233444444444443322 13455 79999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 108 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 108 ~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
+..+++... ..++.|++.+|+|.+........+. .. ..++.... .. +
T Consensus 105 l~~~~~~l~--------~~gd~Vl~~~P~y~~~~~~~~~~g~-~v------------~~v~~~~~------~~----~-- 151 (405)
T PRK09148 105 FANMAQAIT--------APGDVILCPNPSYPIHAFGFIMAGG-VI------------RSVPAEPD------EE----F-- 151 (405)
T ss_pred HHHHHHHhc--------CCCCEEEEcCCCCcccHHHHHhcCC-EE------------EEEeCCCC------CC----C--
Confidence 999988764 3357899999999887544433221 11 11111000 00 0
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccc-cccCCCCC
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFG-CDKYSIKP 266 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~-~~~~~~~~ 266 (447)
.+++++.+....++...++++.|.|++| ...+.+.+++|.++|++||+++|+||+|..+...+.... .....-.+
T Consensus 152 --~~~l~~~~~~~~~~~~~v~l~~P~NPtG--~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~ 227 (405)
T PRK09148 152 --FPALERAVRHSIPKPIALIVNYPSNPTA--YVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAK 227 (405)
T ss_pred --ccCHHHHHhhccccceEEEEeCCCCCCC--cCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCcc
Confidence 1445555554334445566666666665 556889999999999999999999999987743332211 11111112
Q ss_pred C----eeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHHHH
Q 013204 267 D----LVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQVNKI 340 (447)
Q Consensus 267 d----~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~~~ 340 (447)
+ +-+|||.++..++++|++++++++++.+... ....+++.+.+++.++.+.|+.-+ -+...+.++++
T Consensus 228 ~~~i~~~SfSK~~~~pGlR~G~~v~~~~~i~~l~~~-------~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~ 300 (405)
T PRK09148 228 DVTVEFTSMSKTFSMAGWRMGFAVGNERLIAALTRV-------KSYLDYGAFTPIQVAATAALNGPQDCIAEMRELYKKR 300 (405)
T ss_pred CcEEEEeccccccCCcchheeeeeCCHHHHHHHHHH-------HHHhccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 2 2368999884449999999999998888632 122244556667777766665211 12234555666
Q ss_pred HHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEeeC-------CEEEEe
Q 013204 341 APKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVSG-------DNIMMS 412 (447)
Q Consensus 341 ~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~g-------~~iR~~ 412 (447)
.+.+.+.|+++ ++.......|.++.+.++...... ....+.+.++ ++||.+.++. +.+|++
T Consensus 301 r~~l~~~L~~~---~~~~~~p~~g~f~~~~l~~~~~~~--------~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~ 369 (405)
T PRK09148 301 RDVLVESFGRA---GWDIPPPAASMFAWAPIPEAFRHL--------GSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIA 369 (405)
T ss_pred HHHHHHHHHHc---CCccCCCCeeEEEEEECCCccCCC--------CHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEE
Confidence 66666666654 221111233556666664321100 1234666665 6899999751 469999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 013204 413 PPFIMSPEEVDELISKYGKALKATEERV 440 (447)
Q Consensus 413 ~~~~~t~e~i~~~~~~l~~~l~~~~~~~ 440 (447)
. ..+++++++++++|.+.+.+..+..
T Consensus 370 ~--~~~~~~l~~al~~l~~~l~~~~~~~ 395 (405)
T PRK09148 370 L--VENEQRIRQAARNIKRFLSSADETL 395 (405)
T ss_pred e--cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 5789999999999999998776543
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-21 Score=188.50 Aligned_cols=320 Identities=13% Similarity=0.101 Sum_probs=199.4
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHH
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQV 112 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al 112 (447)
..++||+++. +++| .+|.+.+++.+.++...++ +.....++.+.+++.+ ..+++++++++|+++++..++
T Consensus 29 ~~~i~l~~n~--~~~~-~~~~v~~a~~~~~~~~~~~------p~~g~~~lr~~ia~~~-~~~~~~i~~t~G~~~~l~~~~ 98 (359)
T PRK03158 29 EKIVKLASNE--NPYG-PSPKVKEAIAAHLDELALY------PDGYAPELRTKVAKHL-GVDEEQLLFGAGLDEVIQMIS 98 (359)
T ss_pred CceEEecCCC--CCCC-CCHHHHHHHHHHHHHhhcC------CCCcHHHHHHHHHHHh-CCCHHHEEECCCHHHHHHHHH
Confidence 3789998775 4577 5889999999887653221 2334567778888876 345679999999999998888
Q ss_pred HHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHH
Q 013204 113 KLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 192 (447)
Q Consensus 113 ~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (447)
+... ..++.|++.+|+|++........ |... ..+++.+ +. .++++
T Consensus 99 ~~~~--------~~gd~v~~~~p~y~~~~~~~~~~-g~~~------------~~~~~~~-~~-------------~d~~~ 143 (359)
T PRK03158 99 RALL--------NPGTNTVMAEPTFSQYRHNAIIE-GAEV------------REVPLKD-GG-------------HDLEA 143 (359)
T ss_pred HHHh--------CCCCEEEEcCCCHHHHHHHHHHc-CCeE------------EEEecCC-CC-------------cCHHH
Confidence 7653 33478999999998875443322 2111 1111110 00 01355
Q ss_pred HHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc-ccccccCCCCCC-ee-
Q 013204 193 LEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT-MFGCDKYSIKPD-LV- 269 (447)
Q Consensus 193 le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~-~~~~~~~~~~~d-~v- 269 (447)
+++.+. + ++++++++..++.+|.+. +.+.+.++++.|+ +|+++|+||+|..|...+. .......+-.+. ++
T Consensus 144 l~~~~~---~-~~~~v~i~~p~NPtG~~~-~~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~ 217 (359)
T PRK03158 144 MLKAID---E-QTKIVWICNPNNPTGTYV-NHEELLSFLESVP-SHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVL 217 (359)
T ss_pred HHHhcC---C-CCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCC-CCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEE
Confidence 555443 2 344455444455666555 4455555665553 6999999999987633221 111111111122 22
Q ss_pred -eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHh
Q 013204 270 -SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVEQVNKIAPKFQDG 347 (447)
Q Consensus 270 -~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~~~~~~~~~l~~~ 347 (447)
+|||.++.+++|+|++++++++++.+... . .++..+++++.++.++++.-. .+...+..+++.+.+.+.
T Consensus 218 ~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~-------~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 288 (359)
T PRK03158 218 RTFSKAYGLAALRVGYGIASEELIEKLNIA-------R--PPFNTTRIAQYAAIAALEDQAFLKECVEKNAEGLEQYYAF 288 (359)
T ss_pred EechHhhcCcchhhehhcCCHHHHHHHHHh-------c--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 68999985348999999999999888632 1 245678888888888875211 112223333444444444
Q ss_pred HhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-----CCEEEEecCCCCCHHHH
Q 013204 348 VKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-----GDNIMMSPPFIMSPEEV 422 (447)
Q Consensus 348 L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----g~~iR~~~~~~~t~e~i 422 (447)
|++. + +...++.|.++.+.+... ...+.+.|+++||.+.++ .+.+|++ ..+++++
T Consensus 289 l~~~---~-~~~~~~~g~~i~~~~~~~-------------~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~---~~~~~~~ 348 (359)
T PRK03158 289 CKEY---G-LFYYPSQTNFIFVDTGRD-------------ANELFEALLKKGYIVRSGAALGFPTGVRIT---IGLKEQN 348 (359)
T ss_pred HHHC---C-CeeCCCcCcEEEEECCCC-------------HHHHHHHHHHCCeEEeeCCCCCCCCeEEEe---cCCHHHH
Confidence 4443 2 222345577776665311 345788899999999985 2579999 4589999
Q ss_pred HHHHHHHHHH
Q 013204 423 DELISKYGKA 432 (447)
Q Consensus 423 ~~~~~~l~~~ 432 (447)
++++++|+++
T Consensus 349 ~~l~~al~~~ 358 (359)
T PRK03158 349 DKIIELLKEL 358 (359)
T ss_pred HHHHHHHHHh
Confidence 9999999875
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-20 Score=182.73 Aligned_cols=339 Identities=12% Similarity=0.089 Sum_probs=206.1
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhHHHH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEANDT 110 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA~~~ 110 (447)
|..++++..+.. +++ .++.+.+++.+.+......+....+..+....+++.+.+.+. ...++++++++|+++|+..
T Consensus 31 ~~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~ 107 (387)
T PRK08960 31 GHDVIHLEIGEP--DFT-TAEPIVAAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLL 107 (387)
T ss_pred CCCeEEeCCCCC--CCC-CCHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHH
Confidence 556788876643 333 478999999988864322222112233334444444443321 2467899999999999999
Q ss_pred HHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHH
Q 013204 111 QVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190 (447)
Q Consensus 111 Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (447)
++.+.. .+++.|++.+|.|..........+.. . ..+++.....+. .++
T Consensus 108 ~~~~~~--------~~gd~vlv~~p~y~~~~~~~~~~g~~-~------------~~v~~~~~~~~~-----------~d~ 155 (387)
T PRK08960 108 ASSLLV--------DPGKHWLLADPGYPCNRHFLRLVEGA-A------------QLVPVGPDSRYQ-----------LTP 155 (387)
T ss_pred HHHHhc--------CCCCEEEEcCCCCcchHHHHHhcCCe-E------------EEEecCcccCCC-----------CCH
Confidence 988663 34578999999998875444332211 1 111111100000 013
Q ss_pred HHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee-
Q 013204 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV- 269 (447)
Q Consensus 191 ~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v- 269 (447)
+++++.+. ++...++++.|.|++| ...+.+.+++|+++|++||+++|+||+|.++...+... ......++++
T Consensus 156 ~~l~~~~~---~~~~~i~i~~p~NPtG--~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~--~~~~~~~~vi~ 228 (387)
T PRK08960 156 ALVERHWN---ADTVGALVASPANPTG--TLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAA--SVLEVDDDAFV 228 (387)
T ss_pred HHHHHHhC---ccceEEEEECCCCCCC--cCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCC--ChhhccCCEEE
Confidence 56666554 3445667777766665 45578899999999999999999999998774332211 1223345655
Q ss_pred --eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHH-h--hhcHHHHHHHHHHHH
Q 013204 270 --SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIY-K--ERNIVEQVNKIAPKF 344 (447)
Q Consensus 270 --~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~-~--~~~~~~~~~~~~~~l 344 (447)
+|||.++.+++|+|++++++++++.+... ....+.+.+.+++.++.++++.- . -.+..+.++++.+.+
T Consensus 229 ~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~-------~~~~~~~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l 301 (387)
T PRK08960 229 LNSFSKYFGMTGWRLGWLVAPPAAVPELEKL-------AQNLYISASTPAQHAALACFEPETLAILEARRAEFARRRDFL 301 (387)
T ss_pred EeecccccCCcccEEEEEEcCHHHHHHHHHH-------HhhhccCCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHH
Confidence 48999875449999999999998877531 22234455677777777766420 0 112334455555556
Q ss_pred HHhHhhccCCCceeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEee--------CCEEEEecC
Q 013204 345 QDGVKAFSDSPIIGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVS--------GDNIMMSPP 414 (447)
Q Consensus 345 ~~~L~~l~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~--------g~~iR~~~~ 414 (447)
.+.|++. +..... ..-|.++.+++..... ....+.+.|+ ++||.+.++ ++.+|++..
T Consensus 302 ~~~L~~~---~~~~~~~p~g~~f~~~~~~~~~~----------~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~ 368 (387)
T PRK08960 302 LPALREL---GFGIAVEPQGAFYLYADISAFGG----------DAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYT 368 (387)
T ss_pred HHHHHhc---CCcCCcCCCeeEEEEEeccccCC----------CHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEec
Confidence 6666553 221112 2235566666653110 1345777765 689999875 247999944
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 013204 415 FIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 415 ~~~t~e~i~~~~~~l~~~l~ 434 (447)
.+.+.+.+++++|.+++.
T Consensus 369 --~~~~~l~~al~~l~~~~~ 386 (387)
T PRK08960 369 --QSLPRLQEAVERIARGLR 386 (387)
T ss_pred --CCHHHHHHHHHHHHHHHh
Confidence 578888888888877654
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-20 Score=184.78 Aligned_cols=337 Identities=11% Similarity=0.044 Sum_probs=204.6
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcc-cccCcCCChHHHHHHHHHHHhcC-cCCC-CeEEEeCChhhH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY-HSFWNRTTKPSLDLAKELLEMFT-ASKM-AKVFFTNSGSEA 107 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~-~~~~-~~v~~~~sGseA 107 (447)
.|..++||..+. ..++ .++.+.+++.+.+.+...+ +. ..+..+....+++.+.+.+. ...+ ++|++++|+++|
T Consensus 30 ~~~~~i~l~~g~--p~~~-~~~~~~~~~~~~~~~~~~~~y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~a 105 (399)
T PRK07681 30 AGHKMIDLSIGN--PDMP-PADFVREEMVHTANQKESYGYT-LSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDG 105 (399)
T ss_pred cCCCeEEeCCCC--CCCC-CCHHHHHHHHHHHhccccCCCC-CCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHH
Confidence 467889998774 3344 4778888888877542221 11 12333444455555544322 2355 689999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 108 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 108 ~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
+..+++... ..++.|++.+|+|.+........+.... .++...... + .
T Consensus 106 l~~~~~~~~--------~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~-------------~v~~~~~~~----------~-~ 153 (399)
T PRK07681 106 LVHLPMVYA--------NPGDIILVPDPGYTAYETGIQMAGATSY-------------YMPLKKEND----------F-L 153 (399)
T ss_pred HHHHHHHhC--------CCCCEEEECCCCccchHHHHHhcCCEEE-------------EEecCCCCC----------C-c
Confidence 999888663 3347899999999887655444332211 111100000 0 0
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-c-cccCCCC
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-G-CDKYSIK 265 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~-~~~~~~~ 265 (447)
.+++++++.+. ++...++++.|.|++| ...+.+.+++|.++|++||+++|.||+|..+...+... . .+..+..
T Consensus 154 ~d~~~l~~~~~---~~~k~v~l~~P~NPTG--~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~ 228 (399)
T PRK07681 154 PDLELIPEEIA---DKAKMMILNFPGNPVP--AMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAK 228 (399)
T ss_pred CCHHHHHHhcc---ccceEEEEeCCCCCcC--cCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCc
Confidence 01355555443 2233344444766665 55688999999999999999999999999774333221 1 1111111
Q ss_pred CC---eeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHHHH
Q 013204 266 PD---LVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQVNKI 340 (447)
Q Consensus 266 ~d---~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~~~ 340 (447)
.. +-+|||.++.+++++|++++++++++.+... ....+++.+.+++.++.++++... -++..+.++++
T Consensus 229 ~~~i~~~S~SK~~~~~GlRiG~~i~~~~l~~~~~~~-------~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 301 (399)
T PRK07681 229 EVGVEINSLSKSYSLAGSRIGYMIGNEEIVRALTQF-------KSNTDYGVFLPIQKAACAALRNGAAFCEKNRGIYQER 301 (399)
T ss_pred ccEEEEeecccccCCccceeEEEecCHHHHHHHHHH-------HhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 11 2368999974448999999999998888632 122345566677777777665211 12223444555
Q ss_pred HHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHH-cCceEEeeC-------CEEEEe
Q 013204 341 APKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEK-HGMLVRVSG-------DNIMMS 412 (447)
Q Consensus 341 ~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~g-------~~iR~~ 412 (447)
.+.+.+.|++. ++.......|.++.+.+.... ....+.+.+++ +||.+.++. +.+|++
T Consensus 302 ~~~l~~~L~~~---g~~~~~p~~g~f~~~~l~~~~-----------~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis 367 (399)
T PRK07681 302 RDTLVDGFRTF---GWNVDKPAGSMFVWAEIPKGW-----------TSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIA 367 (399)
T ss_pred HHHHHHHHHHC---CCcccCCCeeeEEEEECCCCC-----------CHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEE
Confidence 55666666554 221111233666677665321 13457777776 899998751 469999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 013204 413 PPFIMSPEEVDELISKYGK 431 (447)
Q Consensus 413 ~~~~~t~e~i~~~~~~l~~ 431 (447)
+..+++++++++++|++
T Consensus 368 --~~~~~~~~~~~l~~l~~ 384 (399)
T PRK07681 368 --LVQDEEVLQQAVENIRN 384 (399)
T ss_pred --ecCCHHHHHHHHHHHHH
Confidence 55788999999999988
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-20 Score=182.14 Aligned_cols=342 Identities=16% Similarity=0.191 Sum_probs=205.5
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc-C-CCCeEEEeCChhhHHHH
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA-S-KMAKVFFTNSGSEANDT 110 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~-~~~~v~~~~sGseA~~~ 110 (447)
..++||..+.. .++ .++.+.+++.+.+......+....+..+....+++.+...+.. . ..++|++++|+++|+..
T Consensus 30 ~~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~ 106 (391)
T PRK07309 30 PGILKLTLGEP--DFT-TPDHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSA 106 (391)
T ss_pred CCeEEcCCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHH
Confidence 56899987753 455 3678888988877643222221122233333444444333211 1 23689999999999999
Q ss_pred HHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHH
Q 013204 111 QVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190 (447)
Q Consensus 111 Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (447)
+++... .+++.|++.+|+|.++....... |... ..++.... .+ ..+.
T Consensus 107 ~~~~~~--------~~gd~vl~~~p~y~~~~~~~~~~-g~~~------------~~~~~~~~-----------~~-~~d~ 153 (391)
T PRK07309 107 SLTAIL--------EPGDKVLLPAPAYPGYEPIVNLV-GAEI------------VEIDTTEN-----------DF-VLTP 153 (391)
T ss_pred HHHHhc--------CCCCEEEEeCCCCcchHHHHHHc-CCEE------------EEEecCCc-----------CC-cCCH
Confidence 988653 33578999999998875433322 2111 11111000 00 0113
Q ss_pred HHHHHHHHhhCCCcEEEEEEc-cccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-ccccCCCCCC-
Q 013204 191 NNLEDLILKEGPETIAAFIAE-PVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-GCDKYSIKPD- 267 (447)
Q Consensus 191 ~~le~~l~~~~~~~~a~vi~e-pv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~~~~~~~~~d- 267 (447)
+++++.+.... +++++|++. |.|++| ...+.+.+++|.++|++||+++|+||+|..+...+... .... ..++
T Consensus 154 ~~l~~~~~~~~-~~~~~i~l~~P~NPtG--~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~--~~~~~ 228 (391)
T PRK07309 154 EMLEKAILEQG-DKLKAVILNYPANPTG--VTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAE--YLPDQ 228 (391)
T ss_pred HHHHHHhhccC-CCeEEEEEECCCCCCC--cCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHH--hccCC
Confidence 67777765322 245555555 655554 55677889999999999999999999999774434221 1111 1122
Q ss_pred ee---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHHHHHH
Q 013204 268 LV---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQVNKIAP 342 (447)
Q Consensus 268 ~v---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~~~~~ 342 (447)
++ +|||.++..++++|++++++++++.+... ......+.+++++.++.+.++... .....+.++++.+
T Consensus 229 ~i~~~S~SK~~g~~GlRvG~~v~~~~~~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 301 (391)
T PRK07309 229 TILINGLSKSHAMTGWRIGLIFAPAEFTAQLIKS-------HQYLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRD 301 (391)
T ss_pred EEEEecChhhccCccceeEEEEeCHHHHHHHHHH-------HhhcccCCChHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Confidence 22 58999874449999999999998888632 112233556677777777665311 1233455666666
Q ss_pred HHHHhHhhccCCCceeeEeeee-eEEEEEeecCCCCCCCCCCCcchHHHHHHH-HHHcCceEEeeC-------CEEEEec
Q 013204 343 KFQDGVKAFSDSPIIGEIRGTG-LILGTEFADNKSPNEPFPPEWGIGAYFGAQ-CEKHGMLVRVSG-------DNIMMSP 413 (447)
Q Consensus 343 ~l~~~L~~l~~~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~Gi~~~~~g-------~~iR~~~ 413 (447)
.+.+.|++. ++ ....+.| .++.+.++..... ....+.++ +.++||.+.++. +.+|++
T Consensus 302 ~~~~~l~~~---~~-~~~~p~gg~~~~~~l~~~~~~---------~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~- 367 (391)
T PRK07309 302 YIIEKMTDL---GF-KIIKPDGAFYIFAKIPAGYNQ---------DSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLS- 367 (391)
T ss_pred HHHHHHHHC---CC-eecCCCeeEEEEEECCCCCCC---------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEE-
Confidence 676766654 22 2223333 4445555432110 12346655 557899998652 479999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 414 PFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 414 ~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
+..+.+++++++++|.+++++++
T Consensus 368 -~~~~~~~l~~~i~~l~~~~~~~~ 390 (391)
T PRK07309 368 -YAASMETIKEAMKRLKEYMEEHA 390 (391)
T ss_pred -ecCCHHHHHHHHHHHHHHHHhhc
Confidence 44688999999999999887653
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-20 Score=184.45 Aligned_cols=341 Identities=11% Similarity=0.088 Sum_probs=198.8
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCC-cccccCcCCChHHHHHHHHHHHhcC-cCCCC-eEEEeCChhhH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP-FYHSFWNRTTKPSLDLAKELLEMFT-ASKMA-KVFFTNSGSEA 107 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~-~v~~~~sGseA 107 (447)
+|+.++||..+. ..++ .++.+.+++.+.+.... ..+....+..+....+++.+.+.+. ...++ +|++++|+.+|
T Consensus 28 ~~~~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~a 104 (388)
T PRK07366 28 AGKELIDLSLGS--SDLP-APAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEG 104 (388)
T ss_pred cCCCeEEeCCCC--CCCC-CCHHHHHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHH
Confidence 577889997774 3455 47889999988775321 1122112233344444444443322 24566 69999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 108 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 108 ~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
+..+++... ..++.|++.+|+|.+........+.... .++..... . + .
T Consensus 105 l~~~~~~l~--------~~gd~Vlv~~P~y~~~~~~~~~~g~~~~-------------~v~~~~~~------~----~-~ 152 (388)
T PRK07366 105 TAHLPLAVL--------NPGDFALLLDPGYPSHAGGVYLAGGQIY-------------PMPLRAEN------D----F-L 152 (388)
T ss_pred HHHHHHHhC--------CCCCEEEEcCCCCcchHHHHHhcCCEEE-------------EEECCCcc------C----C-C
Confidence 999988653 3457899999999888655444332211 11110000 0 0 0
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccc-c-ccccCCCC
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTM-F-GCDKYSIK 265 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~-~-~~~~~~~~ 265 (447)
.+++++++.+. ++..+++++.|.|++| ...+.+.+++|.++|++||+++|.||+|..|...+.. . ......-.
T Consensus 153 ~d~~~l~~~~~---~~~k~i~l~~p~NPTG--~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~ 227 (388)
T PRK07366 153 PVFADIPTEVL---AQARLMVLSYPHNPTT--AIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPE 227 (388)
T ss_pred CCHHHHHHhhc---ccceEEEEeCCCCCCC--ccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCC
Confidence 00244444332 2233455555555555 4568899999999999999999999999987544321 1 11111111
Q ss_pred -CCee---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHHH
Q 013204 266 -PDLV---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQVNK 339 (447)
Q Consensus 266 -~d~v---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~~ 339 (447)
+.++ +|||.++.+++++|++++++++++.+.... ....++..+..+.++.+++..-. -++..+.+++
T Consensus 228 ~~~vi~~~SfSK~~g~~GlRiG~~v~~~~li~~l~~~~-------~~~~~~~~~~~~~~a~~~l~~~~~~l~~~~~~~~~ 300 (388)
T PRK07366 228 KSVSIEFFTLSKSYNMGGFRIGFAIGNAQLIQALRQVK-------AVVDFNQYRGILNGAIAALTGPQATVQQTVQIFRQ 300 (388)
T ss_pred cccEEEEeecccccCCcchhheehcCCHHHHHHHHHHH-------hhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 2222 689999754499999999999988886421 11122222222333444443100 1233455556
Q ss_pred HHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHH-HHcCceEEee---C----CEEEE
Q 013204 340 IAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQC-EKHGMLVRVS---G----DNIMM 411 (447)
Q Consensus 340 ~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~---g----~~iR~ 411 (447)
+.+.+.+.|+++ ++....+..|.++.+.+...... ....+.+.+ .++||.+.++ + +.+|+
T Consensus 301 ~r~~l~~~L~~~---~~~~~~p~~g~f~~~~~~~~~~~---------~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi 368 (388)
T PRK07366 301 RRDAFINALHQI---GWPVPLPEATMYVWAKLPEPWQG---------NSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRF 368 (388)
T ss_pred HHHHHHHHHHHC---CCcccCCCeeEEEEEECCcccCC---------CHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEE
Confidence 666666666654 22112234466777776532100 023466666 5679999875 1 46999
Q ss_pred ecCCCCCHHHHHHHHHHHHHH
Q 013204 412 SPPFIMSPEEVDELISKYGKA 432 (447)
Q Consensus 412 ~~~~~~t~e~i~~~~~~l~~~ 432 (447)
+ +..+++++++++++|.+.
T Consensus 369 ~--~~~~~~~l~~~l~rl~~~ 387 (388)
T PRK07366 369 A--LVHDPDILEEAVERIAAF 387 (388)
T ss_pred E--ecCCHHHHHHHHHHHHHh
Confidence 9 557899999999999865
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-20 Score=185.07 Aligned_cols=338 Identities=14% Similarity=0.121 Sum_probs=208.2
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcc-cccC--c--CCChHHHHHHHHHHHhcCcCCCCeEEEeCChhh
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY-HSFW--N--RTTKPSLDLAKELLEMFTASKMAKVFFTNSGSE 106 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~~~--~--~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGse 106 (447)
+..|||..+. |.-++.+.+++.+.+...... +... . ...+...++.+.+++++...+.++|+|++|+++
T Consensus 16 ~~iyld~a~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~ 89 (398)
T TIGR03392 16 GTVYLDSAAT------ALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTE 89 (398)
T ss_pred CeEEeeCccc------cCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHH
Confidence 5689997544 456789999998887542211 1000 0 012334567778888874334679999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchh---hhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChh
Q 013204 107 ANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTL---IAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEE 183 (447)
Q Consensus 107 A~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (447)
++..++...... ...++++||+.++.|++... ......|... ..++.+..+.
T Consensus 90 ~l~~~~~~~~~~----~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v------------~~v~~~~~~~--------- 144 (398)
T TIGR03392 90 SINLVAQSYARP----RLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKV------------VKLPIGADLL--------- 144 (398)
T ss_pred HHHHHHHHhhhc----cCCCCCEEEECCcchhHHHHHHHHHHHHcCcEE------------EEEecCCCCC---------
Confidence 999998865210 00234688888888876421 1111122111 1111111000
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCC
Q 013204 184 EYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYS 263 (447)
Q Consensus 184 ~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~ 263 (447)
.+++++++.+. +++++|++..+++..|.+.+ +++|.++|++||+++++|++|+ +|.. . .....
T Consensus 145 ----~~~~~l~~~i~----~~t~lv~i~~~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~~~--~--~~~~~ 207 (398)
T TIGR03392 145 ----PDIRQLPELLT----PRTRILALGQMSNVTGGCPD----LARAITLAHQYGAVVVVDGAQG-VVHG--P--PDVQA 207 (398)
T ss_pred ----cCHHHHHHHhc----cCceEEEEECccccccccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCC--C--CChhh
Confidence 01366777664 24567777777777888876 8999999999999999999996 3322 1 12223
Q ss_pred CCCCeeeec--ccCCCcccceeEEEeChhHHHHhhhccCC-----------------CCccCcCCCCCCcHHHHHHHHHH
Q 013204 264 IKPDLVSFA--KALSSAYMPIGAILVSPEVSEVIHSQSNT-----------------LGSFSHGFTYSGHPVSCAVAIEA 324 (447)
Q Consensus 264 ~~~d~v~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~t~~~~~~~~~aa~a~ 324 (447)
..+|+.++| |.++ + .++|+++.++++++.+...... +..+. ..+.+..++++..++
T Consensus 208 ~~~d~~~~s~~K~~g-p-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e---~GT~~~~~~~a~~~a 282 (398)
T TIGR03392 208 LDIDFYAFSGHKLYG-P-TGIGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFE---AGTPNIAGVIGLSAA 282 (398)
T ss_pred cCCCEEEEecccccC-C-CceEEEEEcHHHHhhCCCeecCCceEeeccccccccCCChhhcc---CCCCCHHHHHHHHHH
Confidence 457998888 9554 3 4689999999987766421000 00011 113455566666677
Q ss_pred HHHHhhh---cHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCce
Q 013204 325 LKIYKER---NIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGML 401 (447)
Q Consensus 325 l~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~ 401 (447)
++.+.+. +..++..++.+++++.|+++....+.. ...+.++.+.+.... ...+.+.|.++||.
T Consensus 283 l~~l~~~g~~~i~~~~~~l~~~l~~~l~~l~g~~~~~--~~~~~i~~~~~~~~~------------~~~l~~~L~~~gI~ 348 (398)
T TIGR03392 283 LEWLTDIDIAAAEAWSVSLADLAEERLAQLPGFRSFR--CPGSSLLAFDFAGVH------------HSDLAALLAESGIA 348 (398)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeC--CCCCcEEEEEeCCcC------------HHHHHHHHHhCCEE
Confidence 7766543 344566666777777776652221111 112334444443211 34577888999999
Q ss_pred EEee-------------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 402 VRVS-------------GDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 402 ~~~~-------------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
++.+ ++.+|++++..+|++||+++++.|+++++++
T Consensus 349 v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~~~ 396 (398)
T TIGR03392 349 LRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDVDALVDAVGAALELL 396 (398)
T ss_pred EecCccchHHHHHHhCCCCEEEEEeeccCCHHHHHHHHHHHHHHHHHh
Confidence 8754 2479999999999999999999999988764
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-20 Score=183.49 Aligned_cols=347 Identities=14% Similarity=0.102 Sum_probs=206.0
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhHHHH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEANDT 110 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA~~~ 110 (447)
+...+||..+.. .+. .+|++.+++.+.+.+....+....+.......+++.+.+.+. ....+++++++|+++|+..
T Consensus 30 ~~~~~~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~ 106 (393)
T PRK05764 30 GRDVISLGAGEP--DFD-TPEHIKEAAIEALDDGKTKYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYN 106 (393)
T ss_pred cCCEEEeCCCCC--CCC-CCHHHHHHHHHHHhcCCCCcCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHH
Confidence 557899988753 233 578999999888765322222112223333344444433322 2355789999999999999
Q ss_pred HHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHH
Q 013204 111 QVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190 (447)
Q Consensus 111 Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (447)
++..+. ..++.|++.++.|.+........ |... ..++...... + ..++
T Consensus 107 ~~~~~~--------~~gd~vl~~~p~y~~~~~~~~~~-g~~~------------~~~~~~~~~~----------~-~~d~ 154 (393)
T PRK05764 107 AFMALL--------DPGDEVIIPAPYWVSYPEMVKLA-GGVP------------VFVPTGEENG----------F-KLTV 154 (393)
T ss_pred HHHHhc--------CCCCEEEecCCCCcchHHHHHHc-CCEE------------EEEecCcccC----------C-cCCH
Confidence 888653 33478999999998765443332 2111 1111100000 0 0012
Q ss_pred HHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-cc-cc-CCCCC-
Q 013204 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-GC-DK-YSIKP- 266 (447)
Q Consensus 191 ~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~~-~~-~~~~~- 266 (447)
+++++.+. ++...++++.|.|++ | ...+.+.+++|.++|++||+++|+||+|..+...+..+ .. .. .+...
T Consensus 155 ~~l~~~l~---~~~~~v~~~~p~NPt-G-~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~ 229 (393)
T PRK05764 155 EQLEAAIT---PKTKALILNSPSNPT-G-AVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDR 229 (393)
T ss_pred HHHHHhhC---ccceEEEEECCCCCC-C-cccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCC
Confidence 56666653 233345566665554 4 44567889999999999999999999998764333221 11 11 12222
Q ss_pred Cee--eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHHHHHH
Q 013204 267 DLV--SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQVNKIAP 342 (447)
Q Consensus 267 d~v--~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~~~~~ 342 (447)
+++ +|||.++..++++|++++++++++.+... ....+...+++++.++.+.++... -+++.+.++++.+
T Consensus 230 ~i~~~s~SK~~~~~G~RiG~i~~~~~~~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 302 (393)
T PRK05764 230 TITVNGFSKAYAMTGWRLGYAAGPKELIKAMSKL-------QSHSTSNPTSIAQYAAVAALNGPQDEVEEMRQAFEERRD 302 (393)
T ss_pred EEEEecCcccccCccceeEEEecCHHHHHHHHHH-------HhhcccCCChHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 222 58999884448999999999998887632 112344567777777777765101 1234455555566
Q ss_pred HHHHhHhhccCCCceeeEeeee-eEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEeeC-----CEEEEecCC
Q 013204 343 KFQDGVKAFSDSPIIGEIRGTG-LILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVSG-----DNIMMSPPF 415 (447)
Q Consensus 343 ~l~~~L~~l~~~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~g-----~~iR~~~~~ 415 (447)
.+++.|+++.+.. ...+.| .++.+.+....... . .....+.+.++ ++||.+.++. +.+|++ +
T Consensus 303 ~l~~~L~~~~g~~---~~~~~g~~~~~~~~~~~~~~~-~-----~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis--~ 371 (393)
T PRK05764 303 LMVDGLNEIPGLE---CPKPEGAFYVFPNVSKLLGKS-I-----TDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLS--Y 371 (393)
T ss_pred HHHHHHhhCCCCc---ccCCCcceEEEEecccccccc-c-----CCHHHHHHHHHHhCCEEEccccccCCCCEEEEE--e
Confidence 6666666542222 223444 34455554321100 0 01245666665 5799988752 579999 6
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 013204 416 IMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 416 ~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.++++++++++++|.+++++.
T Consensus 372 ~~~~~~~~~~i~~l~~~~~~~ 392 (393)
T PRK05764 372 ATSLEDLEEGLERIERFLESL 392 (393)
T ss_pred cCCHHHHHHHHHHHHHHHHhh
Confidence 679999999999999988754
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.1e-21 Score=184.36 Aligned_cols=317 Identities=15% Similarity=0.185 Sum_probs=198.2
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHH
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQV 112 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al 112 (447)
.+.+||++|. ++++ .+|++++++.++......+ +.....++.+.+++++. .+.+++++++|+++++..++
T Consensus 19 ~~~i~l~~~~--~~~~-~~~~~~~a~~~~~~~~~~y------~~~~~~~lr~~ia~~~~-~~~~~i~~~~G~~~~l~~~~ 88 (346)
T TIGR01141 19 KEVIKLNSNE--NPFG-PPPKAKEALRAEADKLHRY------PDPDPAELKQALADYYG-VDPEQILLGNGSDEIIELLI 88 (346)
T ss_pred CceEEccCCC--CCCC-CCHHHHHHHHHhHHHhhcC------CCCCHHHHHHHHHHHhC-cChHHEEEcCCHHHHHHHHH
Confidence 4799998775 3566 5899999999886532211 12223678888888874 45678999999999998888
Q ss_pred HHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHH
Q 013204 113 KLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 192 (447)
Q Consensus 113 ~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (447)
+.+. .++++|++.++.|..+...... .|... ..++....+ ..+++.
T Consensus 89 ~~l~--------~~gd~v~~~~p~y~~~~~~~~~-~g~~~------------~~~~~~~~~-------------~~d~~~ 134 (346)
T TIGR01141 89 RAFL--------EPGDAVLVPPPTYSMYEISAKI-HGAEV------------VKVPLDEDG-------------QLDLED 134 (346)
T ss_pred HHhc--------CCCCEEEEcCCCHHHHHHHHHH-cCCeE------------EEeccCCCC-------------CCCHHH
Confidence 7653 2347899989988544322222 12111 111111100 011355
Q ss_pred HHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee---
Q 013204 193 LEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--- 269 (447)
Q Consensus 193 le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--- 269 (447)
+++.+. +.+++|+++..++.+|.+.+ .+.+.++++.|+ +++++|+||+|.++...+... ......++++
T Consensus 135 l~~~~~----~~~~~v~l~~p~NptG~~~~-~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~~~~--~~~~~~~~~i~~~ 206 (346)
T TIGR01141 135 ILVAID----DKPKLVFLCSPNNPTGNLLS-RSDIEAVLERTP-EDALVVVDEAYGEFSGEPSTL--PLLAEYPNLIVLR 206 (346)
T ss_pred HHHhcC----CCCCEEEEeCCCCCCCCCCC-HHHHHHHHHhCC-CCcEEEEECchhhhcCCccHH--HHHhhCCCEEEEe
Confidence 665432 24555565555566665554 444555555544 599999999998764322111 1111223444
Q ss_pred eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHhH
Q 013204 270 SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVEQVNKIAPKFQDGV 348 (447)
Q Consensus 270 ~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~~~~~~~~~l~~~L 348 (447)
++||.++.+++++|++++++++++.+... ..+++.+++++.++.+.++... -.+..++++++.+++++.|
T Consensus 207 S~sK~~g~~G~r~G~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L 277 (346)
T TIGR01141 207 TLSKAFGLAGLRIGYAIANAEIIDALNKV---------RAPFNLSRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGL 277 (346)
T ss_pred hhhHhhhchhhhceeeecCHHHHHHHHhc---------cCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899965448999999999998888631 1245567788887777765432 2334566667777777777
Q ss_pred hhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC------CEEEEecCCCCCHHHH
Q 013204 349 KAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG------DNIMMSPPFIMSPEEV 422 (447)
Q Consensus 349 ~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g------~~iR~~~~~~~t~e~i 422 (447)
+++.+. ......|.++.+.+.. . ...+.++|.++||.+.++. +.+|+++ .+++++
T Consensus 278 ~~~~g~---~~~~~~g~~~~~~~~~-~------------~~~~~~~L~~~gI~v~~g~~f~~~~~~iRls~---~~~~~i 338 (346)
T TIGR01141 278 KKLPGL---EVYPSDANFVLIRFPR-D------------ADALFEALLEKGIIVRDLNSYPGLPNCLRITV---GTREEN 338 (346)
T ss_pred HhcCCC---EECCCcCCEEEEecCC-C------------HHHHHHHHHHCCeEEEeCCCcCCCCCeEEEec---CCHHHH
Confidence 665222 2223346666666653 1 3468889999999998763 5699994 389999
Q ss_pred HHHHHHH
Q 013204 423 DELISKY 429 (447)
Q Consensus 423 ~~~~~~l 429 (447)
+++++.|
T Consensus 339 ~~~~~~l 345 (346)
T TIGR01141 339 DRFLAAL 345 (346)
T ss_pred HHHHHHh
Confidence 9999876
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-20 Score=182.84 Aligned_cols=335 Identities=16% Similarity=0.184 Sum_probs=200.9
Q ss_pred EEecCCccccccCCCCCHHHHHHHHHHHhcCCcc-cccCc---CCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHH
Q 013204 35 YLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY-HSFWN---RTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDT 110 (447)
Q Consensus 35 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~~~~---~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~ 110 (447)
|||..+. +..++.+++++.+.+.....+ +.... ...+...++.+.+++++. .+.++++|++||++++..
T Consensus 2 yld~aa~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g-~~~~~i~~t~~~t~a~~~ 74 (379)
T TIGR03402 2 YLDNNAT------TRVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLG-AEPDEIIFTSGGTESDNT 74 (379)
T ss_pred cCCCcCC------CCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEeCcHHHHHHH
Confidence 6776544 346899999999887642111 11100 012345567788888874 456789999999999999
Q ss_pred HHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh--hcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHH
Q 013204 111 QVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA--ASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188 (447)
Q Consensus 111 Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (447)
+++.+.... ++++.|++....|++..... +...|.. +..++....+ ..
T Consensus 75 al~~~~~~~-----~~~~~vv~~~~~~~s~~~~~~~~~~~G~~------------v~~v~~~~~g-------------~~ 124 (379)
T TIGR03402 75 AIKSALAAQ-----PEKRHIITTAVEHPAVLSLCQHLEKQGYK------------VTYLPVDEEG-------------RL 124 (379)
T ss_pred HHHHHHHhc-----CCCCeEEEcccccHHHHHHHHHHHHcCCE------------EEEEccCCCC-------------cC
Confidence 998764221 23355555454554432111 1111211 1112211110 01
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCe
Q 013204 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDL 268 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~ 268 (447)
+.+++++.+. +++.+++++.+++.+|.+.+ +++|.++|++||+++|+|++|+ +|.. + ++.....+|+
T Consensus 125 ~~~~l~~~i~----~~~~lv~i~~~~n~tG~~~~----~~~I~~l~~~~g~~vivD~~~~-~g~~--~--~~~~~~~~D~ 191 (379)
T TIGR03402 125 DLEELRAAIT----DDTALVSVMWANNETGTIFP----IEEIGEIAKERGALFHTDAVQA-VGKI--P--IDLKEMNIDM 191 (379)
T ss_pred CHHHHHHhcC----CCcEEEEEEcccCCeeeccc----HHHHHHHHHHcCCEEEEECccc-cccc--c--cCcccCCCCE
Confidence 1366777664 34577888888888888877 8999999999999999999997 5432 2 2223356799
Q ss_pred eeec--ccCCCcccceeEEEeChhHHHHhhhc---cCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh--hcHHHHHHHHH
Q 013204 269 VSFA--KALSSAYMPIGAILVSPEVSEVIHSQ---SNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE--RNIVEQVNKIA 341 (447)
Q Consensus 269 v~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~--~~~~~~~~~~~ 341 (447)
+++| | +.|+ .++|+++.+++.. +... ....... ...+.+..+..+..++++.+.+ ++..++.+++.
T Consensus 192 ~~~s~~K-~~gp-~G~g~l~v~~~~~--~~p~~~g~~~~~~~---~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~ 264 (379)
T TIGR03402 192 LSLSGHK-LHGP-KGVGALYIRKGTR--FRPLLRGGHQERGR---RAGTENVPGIVGLGKAAELATEHLEEENTRVRALR 264 (379)
T ss_pred EEEcHHH-cCCC-CceEEEEECCCCC--CCCcccCCccCCCc---CCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9988 9 6665 5789998887641 1110 0000011 1234455666666677776543 23345666667
Q ss_pred HHHHHhHhh-ccCCCceeeEe-eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee--------------
Q 013204 342 PKFQDGVKA-FSDSPIIGEIR-GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-------------- 405 (447)
Q Consensus 342 ~~l~~~L~~-l~~~~~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------------- 405 (447)
+++++.|++ +....+..... .....+.+.+.... ...+...|.++||.++.+
T Consensus 265 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~ 332 (379)
T TIGR03402 265 DRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYIE------------GEAILLLLDMEGICASSGSACTSGSLEPSHVL 332 (379)
T ss_pred HHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecCCC------------HHHHHHhhccCCEEEEchhhcCCCCCCcCHHH
Confidence 777777664 42211111110 11122333333211 345777888899998753
Q ss_pred ----------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 406 ----------GDNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 406 ----------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
.+.+|++++..+|++|||++++.|+++++++++
T Consensus 333 ~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~~~~ 375 (379)
T TIGR03402 333 RAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIARLRA 375 (379)
T ss_pred HHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 146999999999999999999999999887653
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-20 Score=182.18 Aligned_cols=346 Identities=11% Similarity=0.092 Sum_probs=203.6
Q ss_pred CCCEEEecCCcccc-ccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhc----C-cCCCCeEEEeCCh
Q 013204 31 NGKKYLDSLAGLWC-TALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMF----T-ASKMAKVFFTNSG 104 (447)
Q Consensus 31 dg~~~lD~~~~~~~-~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~-~~~~~~v~~~~sG 104 (447)
+|+.++|+..+... ..++ .++.+.+++.+.+......++ +.....++.+.+++++ . ..+.+++++++|+
T Consensus 28 ~~~~~i~l~~g~p~~~~~~-p~~~~~~~~~~~~~~~~~~Y~----~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~ 102 (398)
T PRK08363 28 KGIKVIRLNIGDPVKFDFQ-PPEHMKEAYCRAIKEGHNYYG----PSEGLPELREAIVKREKRKNGVDITPDDVRVTAAV 102 (398)
T ss_pred cCCCeEEEeCCCCCcCCCC-CCHHHHHHHHHHHHcCCCCCC----CCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCH
Confidence 57889999888543 2455 478899999888765322222 1222344555555543 2 2466799999999
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhH
Q 013204 105 SEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEE 184 (447)
Q Consensus 105 seA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (447)
++|+..++..+. ..++.|++.+++|.+....+...+....... +.+.. .
T Consensus 103 ~~al~~~~~~~~--------~~gd~Vl~~~p~y~~~~~~~~~~g~~~v~~~------------~~~~~-----------~ 151 (398)
T PRK08363 103 TEALQLIFGALL--------DPGDEILIPGPSYPPYTGLVKFYGGVPVEYR------------TIEEE-----------G 151 (398)
T ss_pred HHHHHHHHHHhC--------CCCCEEEEcCCCCcchHHHHHHcCCEEEEec------------ccccc-----------C
Confidence 999999988663 3457899999999887654443332211100 00000 0
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCC
Q 013204 185 YSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSI 264 (447)
Q Consensus 185 ~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~ 264 (447)
+ ..+++++++.+. ++...++++.|.|++| ...+.+.+++|.++|++||+++|.||+|..+...+.........-
T Consensus 152 ~-~~d~~~l~~~~~---~~~~~v~l~~p~NPtG--~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~ 225 (398)
T PRK08363 152 W-QPDIDDIRKKIT---EKTKAIAVINPNNPTG--ALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTK 225 (398)
T ss_pred C-cCCHHHHHhhCC---cceEEEEEECCCCCCC--cCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCc
Confidence 0 001255665553 2334455556655554 455788899999999999999999999987643332211111111
Q ss_pred CCCee---eecccCCCcccceeEEEe--ChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHH
Q 013204 265 KPDLV---SFAKALSSAYMPIGAILV--SPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQV 337 (447)
Q Consensus 265 ~~d~v---~~sK~l~gg~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~ 337 (447)
...++ +|||.++.+++++|++++ ++++++.+...-. .. ....++.+.+++.++.++|.... -.+..+.+
T Consensus 226 ~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~l~~~~~---~~-~~~~~~~s~~~q~~~~~~l~~~~~~l~~~~~~~ 301 (398)
T PRK08363 226 DVPVIVMNGLSKVYFATGWRLGYIYFVDPEGKLAEVREAID---KL-ARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKKL 301 (398)
T ss_pred CCcEEEEecchhccCCccceEEEEEEeCcHHHHHHHHHHHH---HH-hcccccCChHHHHHHHHHHhCChHHHHHHHHHH
Confidence 12233 689997655599999997 6665555432100 00 01134556677776666664210 12334555
Q ss_pred HHHHHHHHHhHhhccCCCceeeEeeeeeEEE-EEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-------CEE
Q 013204 338 NKIAPKFQDGVKAFSDSPIIGEIRGTGLILG-TEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-------DNI 409 (447)
Q Consensus 338 ~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-------~~i 409 (447)
+++.+.+.+.|+++ +.+....+.|.++. +.+....... ....+...|.++||.+.++. +.+
T Consensus 302 ~~~~~~l~~~L~~~---~~~~~~~p~g~~~~~~~l~~~~~~~--------~~~~~~~~l~~~gV~v~~g~~f~~~~~~~i 370 (398)
T PRK08363 302 KERRDYIYKRLNEI---PGISTTKPQGAFYIFPRIEEGPWKD--------DKEFVLDVLHEAHVLFVHGSGFGEYGAGHF 370 (398)
T ss_pred HHHHHHHHHHHhcC---CCCEecCCCeEEEEEEEeccCCCCC--------HHHHHHHHHHhCCEEEeCchhhCCCCCCeE
Confidence 66666666666554 22222344555443 4554311000 12223455688999998752 469
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 410 MMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 410 R~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
|++ +..+++++++++++|.+.+++
T Consensus 371 Ris--~~~~~~~l~~~l~~l~~~~~~ 394 (398)
T PRK08363 371 RLV--FLPPVEILEEAMDRFEEFMRE 394 (398)
T ss_pred EEE--ecCCHHHHHHHHHHHHHHHHH
Confidence 999 567899999999999988765
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.8e-20 Score=180.90 Aligned_cols=350 Identities=13% Similarity=0.083 Sum_probs=205.7
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcC-CcccccCcCCChHHHHHHHHHHHhcC-cCCCC-eEEEeCChhhH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTL-PFYHSFWNRTTKPSLDLAKELLEMFT-ASKMA-KVFFTNSGSEA 107 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~-~v~~~~sGseA 107 (447)
.|..++||..+ .+.+..++.+.+++.+.+... ...++...+.......+++.+.+.+. ....+ ++++++|+.+|
T Consensus 31 ~~~~~~~l~~g---~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~a 107 (403)
T PRK08636 31 AGEDIIDFSMG---NPDGPTPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEG 107 (403)
T ss_pred cCCCEEEcCCc---CCCCCCCHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHH
Confidence 46678999776 333434667888877766432 12222223334445556666554432 23555 79999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC--CcccCCCCCCChhHH
Q 013204 108 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP--HYWRYAHPGETEEEY 185 (447)
Q Consensus 108 ~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 185 (447)
+..+++... .+++.|++.+|+|.+........+.... .++.+ +.+ +.+.+.
T Consensus 108 l~~~~~~l~--------~~gd~Vlv~~P~y~~~~~~~~~~g~~~~-------------~v~~~~~~~~-----~~d~~~- 160 (403)
T PRK08636 108 YVHLVQAIT--------NPGDVAIVPDPAYPIHSQAFILAGGNVH-------------KMPLEYNEDF-----ELDEDQ- 160 (403)
T ss_pred HHHHHHHhC--------CCCCEEEEcCCCCcchHHHHHhcCCEEE-------------EEeccccccC-----ccChhh-
Confidence 999998764 3458999999999887654444332111 11110 000 001011
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-ccccCCC
Q 013204 186 STRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-GCDKYSI 264 (447)
Q Consensus 186 ~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~~~~~~~ 264 (447)
..+.+++.+....++....+++.|.|++| ...+.+.+++|.++|++|++++|.||+|..+...+... ......-
T Consensus 161 ---l~~~l~~~~~~~~~~~~~i~~~~P~NPTG--~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~ 235 (403)
T PRK08636 161 ---FFENLEKALRESSPKPKYVVVNFPHNPTT--ATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEG 235 (403)
T ss_pred ---hhhHHHHHHhhccCCceEEEEeCCCCCCC--ccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCC
Confidence 12455666654333444455555666766 56688999999999999999999999998774433211 1111111
Q ss_pred CCCe----eeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHH
Q 013204 265 KPDL----VSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQVN 338 (447)
Q Consensus 265 ~~d~----v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~ 338 (447)
.++. -+|||.++.+++++|++++++++++.+... .....++.+.+.+.++..+++... -+++.+.++
T Consensus 236 ~~~~~i~~~S~SK~~~~~GlRiG~iv~~~~li~~~~~~-------~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~ 308 (403)
T PRK08636 236 AKDVAVESYTLSKSYNMAGWRVGFVVGNKKLVGALKKI-------KSWLDYGMFTPIQVAATIALDGDQSCVEEIRETYR 308 (403)
T ss_pred ccccEEEEEecccccCCccceeeeeeCCHHHHHHHHHH-------HHHhcccCChHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 1232 258999965449999999999998887532 111123334444554444443111 112334444
Q ss_pred HHHHHHHHhHhhccCCCceeeEe-eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEee-------CCEE
Q 013204 339 KIAPKFQDGVKAFSDSPIIGEIR-GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVS-------GDNI 409 (447)
Q Consensus 339 ~~~~~l~~~L~~l~~~~~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------g~~i 409 (447)
++.+.+.+.|++. ++ .... ..|.++++.++...... ....+.+.++ +.||.+.++ .+.+
T Consensus 309 ~~~~~l~~~L~~~---~~-~~~~p~~g~~~~~~l~~~~~~~--------~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~i 376 (403)
T PRK08636 309 KRRDVLIESFANA---GW-ELQKPRASMFVWAKIPEPARHL--------GSLEFSKQLLTEAKVAVSPGIGFGEYGDEYV 376 (403)
T ss_pred HHHHHHHHHHHHC---CC-cccCCCcceEEEEECCCccCCC--------CHHHHHHHHHHhCCEEEecchhhCcCCCCeE
Confidence 4555555555543 22 2222 34666777765321100 1334666644 689999875 1569
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 410 MMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 410 R~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
|++ +..+++++++++++|.+.++..
T Consensus 377 Ri~--~~~~~~~l~~~~~rl~~~l~~~ 401 (403)
T PRK08636 377 RIA--LIENENRIRQAARNIKKFLKEL 401 (403)
T ss_pred EEE--ecCCHHHHHHHHHHHHHHHHhh
Confidence 999 5579999999999999988664
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=183.62 Aligned_cols=320 Identities=15% Similarity=0.148 Sum_probs=194.1
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEE-eCChhhHH
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFF-TNSGSEAN 108 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~-~~sGseA~ 108 (447)
.++++++||+++. +++| .+|.+.+++.+.+.....+ +.....++.+.+++++ ..+.+++++ ++|.++++
T Consensus 31 ~~~~~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~y------~~~~~~~lr~~ia~~~-~~~~~~i~~~~~Ga~~~i 100 (361)
T PRK00950 31 IDPESIIKLGSNE--NPLG-PSPKAVEAIEKELSKIHRY------PEPDAPELREALSKYT-GVPVENIIVGGDGMDEVI 100 (361)
T ss_pred CCccceEEccCCC--CCCC-CCHHHHHHHHHHHHhhcCC------CCCCHHHHHHHHHHHh-CCCHHHEEEeCCCHHHHH
Confidence 3567999998774 4677 5889999988877643221 2223477888888886 345678888 56667778
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHH
Q 013204 109 DTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188 (447)
Q Consensus 109 ~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (447)
..+++... .+++.|++.++.|..+...... .|... ..++.++.+. .
T Consensus 101 ~~~~~~~~--------~~gd~vlv~~p~y~~~~~~~~~-~g~~~------------~~~~~~~~~~-------------~ 146 (361)
T PRK00950 101 DTLMRTFI--------DPGDEVIIPTPTFSYYEISAKA-HGAKP------------VYAKREEDFS-------------L 146 (361)
T ss_pred HHHHHHhc--------CCCCEEEEcCCChHHHHHHHHH-cCCEE------------EEeecCCCCC-------------c
Confidence 88777652 2346788889988765433322 22111 1111111000 0
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccc-cccCCCCCC
Q 013204 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFG-CDKYSIKPD 267 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~-~~~~~~~~d 267 (447)
+++++++.+. + ++.+++++..++.+|.+.+ .+++.++|+++|+++|+||+|.+|. .+.... ....+-..-
T Consensus 147 ~~~~l~~~~~---~-~~~~v~~~~p~nptG~~~~----~~~l~~l~~~~~~~li~De~y~~~~-~~~~~~~~~~~~~vi~ 217 (361)
T PRK00950 147 DVDSVLNAIT---E-KTKVIFLCTPNNPTGNLIP----EEDIRKILESTDALVFVDEAYVEFA-EYDYTPLALEYDNLII 217 (361)
T ss_pred CHHHHHHHhc---c-CCCEEEEeCCCCCCCCCcC----HHHHHHHHHHCCcEEEEECchhhhC-ccchHHHHHhcCCEEE
Confidence 1356666553 2 3344444444555666666 7788999999999999999998773 111111 111110011
Q ss_pred eeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHh
Q 013204 268 LVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDG 347 (447)
Q Consensus 268 ~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~ 347 (447)
+-+|||.++.+++++|++++++++++.+... ..++..+++++.++.++++ ..++.++..+..+..++.
T Consensus 218 ~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~ 285 (361)
T PRK00950 218 GRTFSKVFGLAGLRIGYGFVPEWLIDYYMRA---------KTPFSLTRLSQAAAIAALS---DKEYIEKSIEHGIKSREY 285 (361)
T ss_pred EEeehHhhcCchhhcchhcCCHHHHHHHHHh---------cCCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHH
Confidence 2278999985448999999999998887632 1234456777777766664 233333333333344444
Q ss_pred Hhh-ccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-------CCEEEEecCCCCCH
Q 013204 348 VKA-FSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-------GDNIMMSPPFIMSP 419 (447)
Q Consensus 348 L~~-l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------g~~iR~~~~~~~t~ 419 (447)
+.+ +. +......|.++.+.+.. . ....+.+.|.++||.+.++ .+.+|++. .++
T Consensus 286 l~~~l~----~~~~~~~~~~i~~~~~~-~-----------~~~~~~~~l~~~gv~v~~~~~f~~~~~~~lRis~---~~~ 346 (361)
T PRK00950 286 LYNELP----FKVYPSEANFVLVDVTP-M-----------TAKEFCEELLKRGVIVRDCTSFRGLGDYYIRVSI---GTF 346 (361)
T ss_pred HHhhcC----eeECCCcceEEEEECCC-C-----------CHHHHHHHHHHCCEEEeeCCccCCCCCCeEEEEC---CCH
Confidence 322 21 11123345566666621 1 1456888999999999864 14699993 388
Q ss_pred HHHHHHHHHHHHHH
Q 013204 420 EEVDELISKYGKAL 433 (447)
Q Consensus 420 e~i~~~~~~l~~~l 433 (447)
+++++++++|++++
T Consensus 347 ~~~~~l~~~L~~il 360 (361)
T PRK00950 347 EENERFLEILKEIV 360 (361)
T ss_pred HHHHHHHHHHHHHh
Confidence 89999999998865
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.4e-20 Score=179.49 Aligned_cols=338 Identities=16% Similarity=0.141 Sum_probs=203.0
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhHHHHH
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEANDTQ 111 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA~~~A 111 (447)
..++||..+. ..+. .+|++.+++.+........+....+.......+++.+.+.+. ..+++++++++|+++|+..+
T Consensus 29 ~~~i~l~~g~--p~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~ 105 (384)
T PRK06348 29 PDIIDLSLGD--PDLI-TDESIINAAFEDAKKGHTRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLA 105 (384)
T ss_pred CCcEEcCCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHH
Confidence 3578987664 2344 367787766665543222222222222333444444433322 24678999999999999999
Q ss_pred HHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHH
Q 013204 112 VKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191 (447)
Q Consensus 112 l~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (447)
+..+. .+++.|++.+|.|.+........+.... .++..+. . .+ ..+++
T Consensus 106 ~~~~~--------~~gd~vlv~~p~y~~~~~~~~~~g~~~~-------------~~~~~~~-------~---~~-~~d~~ 153 (384)
T PRK06348 106 LQSIL--------DPGDEVIIHEPYFTPYKDQIEMVGGKPI-------------ILETYEE-------D---GF-QINVK 153 (384)
T ss_pred HHHhc--------CCCCEEEEeCCCCcchHHHHHHcCCEEE-------------EecCCcC-------c---CC-cCCHH
Confidence 98764 3357899999999887655544332211 1111000 0 00 01136
Q ss_pred HHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccccc-ccCCCCCCee-
Q 013204 192 NLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGC-DKYSIKPDLV- 269 (447)
Q Consensus 192 ~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~-~~~~~~~d~v- 269 (447)
++++.+. ++...++++.|.|++| ...+.+.+++|.++|++||+++|.||+|.++...+..... ...+....++
T Consensus 154 ~l~~~~~---~~~~~v~l~~p~NPtG--~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~ 228 (384)
T PRK06348 154 KLEALIT---SKTKAIILNSPNNPTG--AVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTIT 228 (384)
T ss_pred HHHHhhC---cCccEEEEeCCCCCCC--cCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEE
Confidence 7777664 2233455566655554 4568899999999999999999999999987433221111 1112222333
Q ss_pred --eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHHHHHHHHH
Q 013204 270 --SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQVNKIAPKFQ 345 (447)
Q Consensus 270 --~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~~~~~~l~ 345 (447)
+|||.++.+++|+|++++++++++.+.. +....+++.+++++.++..+++..+ .+.+.+.++++.+.+.
T Consensus 229 ~~SfSK~~~l~GlRiG~~v~~~~~~~~~~~-------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~ 301 (384)
T PRK06348 229 FGSFSKDFAMTGWRIGYVIAPDYIIETAKI-------INEGICFSAPTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAY 301 (384)
T ss_pred EecchhccCCccccceeeecCHHHHHHHHH-------HHHhccCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 6899998433999999999998887753 1222356667888887777775321 1234445555666666
Q ss_pred HhHhhccCCCceeeEeeeee-EEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEeeC-------CEEEEecCCC
Q 013204 346 DGVKAFSDSPIIGEIRGTGL-ILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVSG-------DNIMMSPPFI 416 (447)
Q Consensus 346 ~~L~~l~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~g-------~~iR~~~~~~ 416 (447)
+.|+.+ +........|. ++.+.++.... ....+.+.|+ +.||.+.++. +.+|++ +.
T Consensus 302 ~~L~~~---~~~~~~~p~gg~~~~~~~~~~~~----------~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~--~~ 366 (384)
T PRK06348 302 KRIESI---PNLSLHPPKGSIYAFINIKKTGL----------SSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLA--CT 366 (384)
T ss_pred HHHhcC---CCceeccCCeeEEEEEecccCCC----------CHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEE--ec
Confidence 666654 22222334444 55666653211 1345777776 5799998652 469999 45
Q ss_pred CCHHHHHHHHHHHHHH
Q 013204 417 MSPEEVDELISKYGKA 432 (447)
Q Consensus 417 ~t~e~i~~~~~~l~~~ 432 (447)
.+++++++++++|++.
T Consensus 367 ~~~~~l~~al~~l~~~ 382 (384)
T PRK06348 367 VGIEVLEEAFNRIEKM 382 (384)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 7899999999988653
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.3e-20 Score=180.23 Aligned_cols=355 Identities=12% Similarity=0.054 Sum_probs=209.3
Q ss_pred EEeCCCCEEEecCCccccccCC--CCCHHHHHHHHHHHhcCC-cccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeC
Q 013204 27 VYDVNGKKYLDSLAGLWCTALG--GSEPRLVAAATAQLNTLP-FYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTN 102 (447)
Q Consensus 27 ~~d~dg~~~lD~~~~~~~~~lG--~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~ 102 (447)
+...+|+..+++.-|.. ..+| -.+|.+.+++.+.+.... ..|....+..+....+++.+.+.+. ...++++++++
T Consensus 26 ~~~~~~~~~i~l~~G~p-~~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~ 104 (409)
T PLN00143 26 FNEDDHRLAISFGFGDP-SCFECFRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTL 104 (409)
T ss_pred cccCCCCceeeCCCCCC-CCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEec
Confidence 33456788999877632 2112 167888899988886532 1122222344444445555444321 24668999999
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCCh
Q 013204 103 SGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETE 182 (447)
Q Consensus 103 sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (447)
|+++++..+++... ..++.|++.+|+|++............. .++.... .
T Consensus 105 G~~~al~~~~~~l~--------~~gd~v~v~~P~y~~~~~~~~~~g~~~~-------------~~~~~~~-------~-- 154 (409)
T PLN00143 105 GCKHAAEIIIKVLA--------RPEANILLPRPGFPDVETYAIFHHLEIR-------------HFDLLPE-------K-- 154 (409)
T ss_pred ChHHHHHHHHHHHc--------CCCCEEEEcCCCCcCHHHHHHHcCCEEE-------------EEeccCC-------C--
Confidence 99999999998763 3357899999999887544433221111 1111000 0
Q ss_pred hHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-cccc
Q 013204 183 EEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-GCDK 261 (447)
Q Consensus 183 ~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~~~~ 261 (447)
.+ ..+++++++++. ++...+++++|.|++| ...+.+.+++|.++|++|++++|.||+|..+...+..+ ....
T Consensus 155 -~~-~~d~~~l~~~~~---~~~~~~~~~nP~NPTG--~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~ 227 (409)
T PLN00143 155 -GW-EVDLDAVEAIAD---ENTIAMVIINPGNPCG--SVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGL 227 (409)
T ss_pred -CC-cCCHHHHHHhcc---cCCEEEEEECCCCCCC--CccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhh
Confidence 00 001366766553 3456778888877666 56688999999999999999999999999875444321 1111
Q ss_pred CCCCCCee---eecccCCCcccceeEEEeC-h-hHH------HHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-
Q 013204 262 YSIKPDLV---SFAKALSSAYMPIGAILVS-P-EVS------EVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK- 329 (447)
Q Consensus 262 ~~~~~d~v---~~sK~l~gg~~~~g~~~~~-~-~~~------~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~- 329 (447)
+.-...++ +|||.++.+++|+|+++++ + .++ +.+.. ......+ .+.+++.++.++|+...
T Consensus 228 ~~~~~~vi~~~SfSK~f~~pGlRvG~~v~~~p~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~q~a~~~~l~~~~~ 299 (409)
T PLN00143 228 FASIVPVITLGSISKRWMIPGWGLGWLVTCDPSGLLQICEIADSIKK-------ALNPAPF-PPTFIQAAIPEILEKTTE 299 (409)
T ss_pred hcccCcEEEEccchhhcCCCccceEEEEeeCchhhhhhHHHHHHHHH-------HHhccCC-CCchHHHHHHHHHhcChH
Confidence 21112233 5899876655999999983 3 332 22221 1111122 35567776666664210
Q ss_pred --hhcHHHHHHHHHHHHHHhHhhccCCCcee-eEee-eeeEEEEEeecCCCCCCCCCCCcchHHHHH-HHHHHcCceEEe
Q 013204 330 --ERNIVEQVNKIAPKFQDGVKAFSDSPIIG-EIRG-TGLILGTEFADNKSPNEPFPPEWGIGAYFG-AQCEKHGMLVRV 404 (447)
Q Consensus 330 --~~~~~~~~~~~~~~l~~~L~~l~~~~~~~-~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~Gi~~~~ 404 (447)
-++..+.+++..+.+.+.|+++ +... ...+ -|.++++++....... . .....+. +.+.++||.+.+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~L~~~---~~~~~~~~p~gg~f~w~~l~~~~~~~--~----~~~~~~~~~ll~~~gV~v~p 370 (409)
T PLN00143 300 DFFSKTINILRAALAFCYDKLKEI---PCIMCPQKAEGAFFALVKLNLLLLED--I----EDDMEFCLKLAKEESLIILP 370 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC---CCCCCCCCCCeeEEEEEecchhhcCC--C----CCHHHHHHHHHHhCCEEEeC
Confidence 1223444555555555555554 2211 1122 3567777775310000 0 0022344 455789999998
Q ss_pred eC-----CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 405 SG-----DNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 405 ~g-----~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
+. +.+|++ +..+++++++++++|.+.+.+..+
T Consensus 371 g~~f~~~~~iRi~--~~~~~~~l~~al~rl~~~l~~~~~ 407 (409)
T PLN00143 371 GVTVGLKNWLRIT--FAVEQSSLEDGLGRLKSFCGRHAK 407 (409)
T ss_pred ccccCCCCeEEEE--EcCCHHHHHHHHHHHHHHHHHhcc
Confidence 63 579999 567899999999999998876543
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-20 Score=179.48 Aligned_cols=340 Identities=17% Similarity=0.176 Sum_probs=218.1
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCCc-cc----ccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhH
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPF-YH----SFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEA 107 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA 107 (447)
-.|+|..++ ++.+..+.+++.+....... .+ ......+....+..+.+++++.-.+.++|+|+++.|+|
T Consensus 23 ~vylD~aa~------~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~a 96 (405)
T COG0520 23 LVYLDNAAT------SQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEA 96 (405)
T ss_pred eEEecCccc------ccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHH
Confidence 468997655 34788999999998754221 11 11111233455666777777643335899999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhc---ccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhH
Q 013204 108 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAAS---LSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEE 184 (447)
Q Consensus 108 ~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (447)
+.......... ...++.||+..-.+|....--.. ..|... ..++..+...
T Consensus 97 ln~va~~l~~~-----~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v------------~~i~~~~~g~---------- 149 (405)
T COG0520 97 LNLVARGLGRS-----LKPGDEIVVSDLEHHSNIVPWQELAKRTGAKV------------RVIPLDDDGL---------- 149 (405)
T ss_pred HHHHHHHhhhh-----hcCCCEEEEccCcchhhHHHHHHHHHhcCcEE------------EEEecCCCCC----------
Confidence 99988865211 02347888877777776322111 112211 1122111100
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCC
Q 013204 185 YSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSI 264 (447)
Q Consensus 185 ~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~ 264 (447)
.+.+++++++. +++.+|.+..+.+..|.+.| +++|.++||++|+++++|-+|+ ++.. .++.-.+
T Consensus 150 ---~~~~~~~~~i~----~~Tklvais~vSn~tG~~~p----v~~I~~la~~~ga~v~VDaaq~-~~h~----~idv~~l 213 (405)
T COG0520 150 ---LDLDALEKLIT----PKTKLVALSHVSNVTGTVNP----VKEIAELAHEHGALVLVDAAQA-AGHL----PIDVQEL 213 (405)
T ss_pred ---cCHHHHHHhcC----CCceEEEEECccccccccch----HHHHHHHHHHcCCEEEEECccc-cCcc----CCCchhc
Confidence 01356666443 57889999999999999988 9999999999999999999987 4322 2333345
Q ss_pred CCCeeeec--ccCCCcccceeEEEeChhHHHHhhhccCCCCccC-----cCC----------CCCCcHHHHHHHHHHHHH
Q 013204 265 KPDLVSFA--KALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFS-----HGF----------TYSGHPVSCAVAIEALKI 327 (447)
Q Consensus 265 ~~d~v~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~----------t~~~~~~~~~aa~a~l~~ 327 (447)
..|+++|| |.|.|+ -++|++++++++++.+.+.....+... ... .-+++..+..+..++++.
T Consensus 214 ~~Df~afsgHKwl~gP-~GiGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~ 292 (405)
T COG0520 214 GCDFLAFSGHKWLLGP-TGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDY 292 (405)
T ss_pred CCCEEEEcccccccCC-CceEEEEEchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHH
Confidence 68999998 789887 599999999999988733110000000 000 112234444444556665
Q ss_pred Hhh---hcHHHHHHHHHHHHHHhHhhccCCCceeeEe-eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEE
Q 013204 328 YKE---RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIR-GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR 403 (447)
Q Consensus 328 ~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~ 403 (447)
+++ +++.++.+++.+++.+.|++++...+...-. ..+.++.+.+.... ...+...|.++||.++
T Consensus 293 ~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~~------------~~dv~~~L~~~gI~vr 360 (405)
T COG0520 293 LLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGIH------------PHDVATLLDEKGIAVR 360 (405)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCCCC------------HHHHHHHHHhCCeEEE
Confidence 554 4566777778888888887774333222221 34555556555432 4568899999998887
Q ss_pred eeC-------------CEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 404 VSG-------------DNIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 404 ~~g-------------~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
.+. ..+|+|+.+++|+||||++++.|++..+
T Consensus 361 ~g~~ca~p~~~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 361 AGHHCAQPLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred eccccccHHHHhcCCCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence 652 2399999999999999999999998764
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-20 Score=180.82 Aligned_cols=351 Identities=12% Similarity=0.054 Sum_probs=206.5
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCC-cccccCcCCChHHHHHHHHHHHhcC-c-CCCC-eEEEeCChhh
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP-FYHSFWNRTTKPSLDLAKELLEMFT-A-SKMA-KVFFTNSGSE 106 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~-~-~~~~-~v~~~~sGse 106 (447)
.|+.++|+..+. ..++ .+|.+.+++.+.+.... ..++. .+.......+++.+.+.+. . .+++ +|++++|+.+
T Consensus 42 ~~~~~i~L~~g~--p~~~-~~~~~~~~l~~~~~~~~~~~Y~~-~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~ 117 (410)
T PRK06290 42 PDMELIDMGVGE--PDEM-ADESVVEVLCEEAKKPENRGYAD-NGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKP 117 (410)
T ss_pred CCCCeEEcCCCC--CCCC-CCHHHHHHHHHHHhCCCCCCCCC-CCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHH
Confidence 477899998775 4555 46788888887664321 11221 2333444445555444332 1 3444 7999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHH
Q 013204 107 ANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYS 186 (447)
Q Consensus 107 A~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (447)
++..++.... ..++.|++.+|+|.+....+...+... ..++..... .+
T Consensus 118 al~~~~~~~~--------~~gd~Vlv~~P~y~~~~~~~~~~g~~v-------------~~v~~~~~~----------~~- 165 (410)
T PRK06290 118 ALAMLPSCFI--------NPGDVTLMTVPGYPVTGTHTKYYGGEV-------------YNLPLLEEN----------NF- 165 (410)
T ss_pred HHHHHHHHhC--------CCCCEEEEeCCCCccHHHHHHHcCCEE-------------EEEecCCCc----------CC-
Confidence 9999888663 335789999999988754443322211 111111000 00
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccccc-ccCCCC
Q 013204 187 TRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGC-DKYSIK 265 (447)
Q Consensus 187 ~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~-~~~~~~ 265 (447)
..+++++++.+. ++...+++++|.|++| .+.+.+.+++|.++|++||++||.||+|..+...+....+ +..+..
T Consensus 166 ~~d~~~l~~~~~---~~~k~i~l~nP~NPTG--~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~ 240 (410)
T PRK06290 166 LPDLDSIPKDIK---EKAKLLYLNYPNNPTG--AVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAK 240 (410)
T ss_pred cCCHHHHHHhhc---ccceEEEEECCCCCCC--cCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCcc
Confidence 001355655553 2233444455766665 5568899999999999999999999999876433321111 111111
Q ss_pred -CCe--eeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHHHHHHHH
Q 013204 266 -PDL--VSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVEQVNKIA 341 (447)
Q Consensus 266 -~d~--v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~~~~~~~ 341 (447)
.++ -+|||.++.+++|+|++++++++++.+... ......+.+.+++.++.++|+..+ .++..+.++++.
T Consensus 241 ~~~I~i~SfSK~~g~~GlRiG~ii~~~~l~~~l~~~-------~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~ 313 (410)
T PRK06290 241 EVGVEIHSLSKAYNMTGWRLAFVVGNELIVKAFATV-------KDNNDSGQFIAIQKAGIYALDHPEITEKIREKYSRRL 313 (410)
T ss_pred ccEEEEeechhhcCCchhheEeEEeCHHHHHHHHHH-------HhccccCCcHHHHHHHHHHhhCcHHHHHHHHHHHHHH
Confidence 123 268999975559999999999998887632 111223334456666666664211 123455566666
Q ss_pred HHHHHhHhhccCCCceeeEeeeeeE-EEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEE-ee---CCEEEEecC-C
Q 013204 342 PKFQDGVKAFSDSPIIGEIRGTGLI-LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR-VS---GDNIMMSPP-F 415 (447)
Q Consensus 342 ~~l~~~L~~l~~~~~~~~~~~~g~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~-~~---g~~iR~~~~-~ 415 (447)
+.+.+.|+++ ++ ....+.|.+ +++.++......... .....+.++|+++|+++. ++ ++.+||+.. .
T Consensus 314 ~~l~~~L~~~---g~-~~~~p~g~f~l~v~lp~~~~~~~~~----~~~~~~~~~Ll~~~~v~~~p~~~~~~~lRi~~~~~ 385 (410)
T PRK06290 314 DKLVKILNEV---GF-KAEMPGGTFYLYVKAPKGTKSGIKF----ENAEEFSQYLIKEKLISTVPWDDAGHFLRFSVTFE 385 (410)
T ss_pred HHHHHHHHhC---CC-eecCCCeeeEEEEECCCccccCCCC----CCHHHHHHHHHHhCCEEEECCccccCeEEEEEEcc
Confidence 6677777664 22 222344444 445655321100000 014568889998875554 43 357999933 1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 013204 416 IMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 416 ~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
..++|+.++++++|++.|..++
T Consensus 386 ~~~~~~~~~~~~~l~~~~~~~~ 407 (410)
T PRK06290 386 AKDEEEEDRILEEIKRRLSDVE 407 (410)
T ss_pred cccccchhHHHHHHHHHHhhcc
Confidence 2489999999999999987764
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.5e-20 Score=179.37 Aligned_cols=337 Identities=13% Similarity=0.053 Sum_probs=198.6
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCc-ccccCcCCChHHHHHHHHHHHhcC-cCCCC-eEEEeCChhhH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPF-YHSFWNRTTKPSLDLAKELLEMFT-ASKMA-KVFFTNSGSEA 107 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~-~v~~~~sGseA 107 (447)
.|..++||..+ ++-...+|.+.+++.+.+..... .++...+..+....+++.+.+.+. ...++ ++++++|++++
T Consensus 30 ~~~~~i~l~~~---~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~ 106 (389)
T PRK08068 30 EGHDVINLGQG---NPDQPTPEHIVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAG 106 (389)
T ss_pred cCCCeEEecCC---CCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHH
Confidence 34568999777 33344678899998888764211 121112233344444444443322 13555 79999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 108 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 108 ~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
+..++.... .+++.|++.+|+|..+.......+.... .++..... .+ .
T Consensus 107 l~~~~~~~~--------~~gd~vlv~~P~y~~~~~~~~~~g~~~~-------------~i~~~~~~----------~~-~ 154 (389)
T PRK08068 107 LVELPQCLM--------NPGDTILVPDPGYPDYLSGVALARAQFE-------------TMPLIAEN----------NF-L 154 (389)
T ss_pred HHHHHHHhC--------CCCCEEEEcCCCCcchHHHHHhcCCEEE-------------Eeeccccc----------CC-C
Confidence 998877653 2347899999999777544433222111 11110000 00 0
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc-ccc-cccCCCC
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT-MFG-CDKYSIK 265 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~-~~~-~~~~~~~ 265 (447)
.+++++++.+. .+...+++++|.|++| ...+.+.+++|.++|++|++++|+||+|..+...+. ... ....+..
T Consensus 155 ~d~~~l~~~~~---~~~~~v~l~~P~NPTG--~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~ 229 (389)
T PRK08068 155 PDYTKIPEEVA---EKAKLMYLNYPNNPTG--AVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAK 229 (389)
T ss_pred CCHHHHHHhcc---ccceEEEEECCCCCCC--CcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCcc
Confidence 01255555443 2233455555765655 566889999999999999999999999987755442 111 1222222
Q ss_pred CC---eeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHHHH
Q 013204 266 PD---LVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQVNKI 340 (447)
Q Consensus 266 ~d---~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~~~ 340 (447)
+. +-+|||.++.+++|+|++++++++++.+.... .....+..+..+.++.+++..-. -+...+.++++
T Consensus 230 ~~~i~~~S~SK~~g~~GlRiG~~~~~~~l~~~l~~~~-------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 302 (389)
T PRK08068 230 DVGIELYTLSKTFNMAGWRVAFAVGNESVIEAINLLQ-------DHLFVSLFGAIQDAAIEALLSDQSCVAELVARYESR 302 (389)
T ss_pred CCEEEEecchhccCCccceeEeEecCHHHHHHHHHHH-------hhccCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 22 23689999754499999999999988886421 11122233334444445453111 12345666666
Q ss_pred HHHHHHhHhhccCCCceeeEeeeee-EEEEEeecCCCCCCCCCCCcchHHHHHHHHHH-cCceEEee-------CCEEEE
Q 013204 341 APKFQDGVKAFSDSPIIGEIRGTGL-ILGTEFADNKSPNEPFPPEWGIGAYFGAQCEK-HGMLVRVS-------GDNIMM 411 (447)
Q Consensus 341 ~~~l~~~L~~l~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~-------g~~iR~ 411 (447)
.+.+.+.|+++ ++ ....+.|. ++.+.+.... ....+.+.|++ +||.+.++ .+.+||
T Consensus 303 r~~~~~~L~~~---g~-~~~~~~g~~~~~v~~~~~~-----------~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi 367 (389)
T PRK08068 303 RNAFISACREI---GW-EVDAPKGSFFAWMPVPKGY-----------TSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRV 367 (389)
T ss_pred HHHHHHHHHHC---CC-cccCCCeeEEEEEECCCCC-----------CHHHHHHHHHHhCCEEEecchHhCccCCCeEEE
Confidence 67777777665 22 22334454 4566665321 13468888886 69999874 247999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q 013204 412 SPPFIMSPEEVDELISKYGK 431 (447)
Q Consensus 412 ~~~~~~t~e~i~~~~~~l~~ 431 (447)
+ +..+++.+.+++++|.+
T Consensus 368 ~--~~~~~~~l~~al~~l~~ 385 (389)
T PRK08068 368 G--LLTDEERLREAVERIGK 385 (389)
T ss_pred E--EcCCHHHHHHHHHHHHH
Confidence 9 45677777777777764
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.5e-20 Score=178.92 Aligned_cols=337 Identities=14% Similarity=0.093 Sum_probs=202.7
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc-CC-CCeEEEeCChhhHHH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA-SK-MAKVFFTNSGSEAND 109 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~-~~~v~~~~sGseA~~ 109 (447)
...++||..|.. .++ .++.+.+++.+.+......+....+..+....+++.+.+.+.. .. .+++++++|+++|+.
T Consensus 28 ~~~~i~l~~g~p--~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~ 104 (384)
T PRK12414 28 QHDALNLSQGAP--NFA-PDPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLY 104 (384)
T ss_pred hCCeEEcCCCCC--CCC-CCHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHH
Confidence 346788877753 344 4788899988877643222222233445566677776666532 12 257999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (447)
.+++.+. .++++|++.+++|..........+... ..++... +.+ ..+
T Consensus 105 ~~~~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~g~~~-------------~~v~~~~-----------~~~-~~d 151 (384)
T PRK12414 105 AAISALV--------HPGDEVIYFEPSFDSYAPIVRLQGATP-------------VAIKLSP-----------EDF-RVN 151 (384)
T ss_pred HHHHHhc--------CCCCEEEEeCCCccchHHHHHHcCCEE-------------EEEecCc-----------ccc-ccC
Confidence 9988653 345789999999977654433322111 1111100 000 011
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-cc-ccCCCCCC
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-GC-DKYSIKPD 267 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~~-~~~~~~~d 267 (447)
++++++.+. ++...++++.|.|+ +|. ..+.+.+++|.++|++||+++|+||+|..+...+... .. ...+....
T Consensus 152 ~~~l~~~l~---~~~~~v~i~~p~NP-TG~-~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~ 226 (384)
T PRK12414 152 WDEVAAAIT---PRTRMIIVNTPHNP-SAT-VFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAER 226 (384)
T ss_pred HHHHHhhcC---cccEEEEEcCCCCC-CCc-CCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCc
Confidence 366666553 23333444445455 453 4578889999999999999999999998764444221 11 11122222
Q ss_pred ee---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHHHHHHHHHH
Q 013204 268 LV---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVEQVNKIAPK 343 (447)
Q Consensus 268 ~v---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~~~~~~~~~ 343 (447)
++ +|||.++.+++|+|++++++++++.+... ....+++.+.+++.++.+.|+.-. ..+..+.++++.+.
T Consensus 227 ~i~~~SfSK~~~~pGlRiG~~v~~~~l~~~l~~~-------~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~ 299 (384)
T PRK12414 227 SVIVSSFGKSYHVTGWRVGYCLAPAELMDEIRKV-------HQFMVFSADTPMQHAFAEALAEPASYLGLGAFYQRKRDL 299 (384)
T ss_pred EEEEecccccccCccceEEEEecCHHHHHHHHHH-------HhheecCCCcHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 33 58999974449999999999998887632 222345566777777766664210 11244566666667
Q ss_pred HHHhHhhccCCCceeeEeeeee-EEEEEeecCCCCCCCCCCCcchHHHHH-HHHHHcCceEEeeC---------CEEEEe
Q 013204 344 FQDGVKAFSDSPIIGEIRGTGL-ILGTEFADNKSPNEPFPPEWGIGAYFG-AQCEKHGMLVRVSG---------DNIMMS 412 (447)
Q Consensus 344 l~~~L~~l~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~Gi~~~~~g---------~~iR~~ 412 (447)
+.+.|++. + ....+..|. ++.+.+...... ....+. +.+.++||.+.++. +.+|++
T Consensus 300 l~~~L~~~---g-~~~~~~~gg~~~~~~~~~~~~~---------~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis 366 (384)
T PRK12414 300 LARELAGS---R-FELLPSEGSFFMLARFRHFSDE---------SDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLS 366 (384)
T ss_pred HHHHHHhC---C-CeecCCCcceEEEEcccccCCC---------CHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEE
Confidence 77777664 2 222334454 444455421100 022344 56678899998752 469999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 013204 413 PPFIMSPEEVDELISKYGK 431 (447)
Q Consensus 413 ~~~~~t~e~i~~~~~~l~~ 431 (447)
+..+++++++++++|.+
T Consensus 367 --~~~~~~~~~~~~~rl~~ 383 (384)
T PRK12414 367 --FSKDDATLVEGARRLCS 383 (384)
T ss_pred --ecCCHHHHHHHHHHHhh
Confidence 55689999999998864
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6e-20 Score=180.95 Aligned_cols=339 Identities=14% Similarity=0.126 Sum_probs=208.9
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcc-ccc-C---cCCChHHHHHHHHHHHhcCcCCCCeEEEeCChh
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY-HSF-W---NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGS 105 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~~-~---~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGs 105 (447)
++..|||-.+. |..++.+.+++.+.+.+.... ++. . ....+...++.+.+++++...+.++|+|++|++
T Consensus 18 ~~~~yld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t 91 (401)
T PRK10874 18 DAGVYLDSAAT------ALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTT 91 (401)
T ss_pred CceEEEeCCcc------cCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHH
Confidence 35689997544 446789999999888653211 110 0 011334556777888887432677999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchh---hhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCCh
Q 013204 106 EANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTL---IAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETE 182 (447)
Q Consensus 106 eA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (447)
+++..+++.+... ...++++||+.++.|++... ......|... ..++.+..+.
T Consensus 92 ~~i~~~~~~~~~~----~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v------------~~v~~~~~~~-------- 147 (401)
T PRK10874 92 ESINLVAQSYARP----RLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKV------------VKLPLGADRL-------- 147 (401)
T ss_pred HHHHHHHHHhhhc----cCCCcCEEEECCcchHHHHHHHHHHHHHhCCEE------------EEEecCCCCc--------
Confidence 9999998865210 00234788988888876421 1111122111 1111111000
Q ss_pred hHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccC
Q 013204 183 EEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKY 262 (447)
Q Consensus 183 ~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~ 262 (447)
.+++++++.+. +++.+|++..+++.+|.+.+ +++|.++|+++|+++|+|++|+ +|.. . ....
T Consensus 148 -----~d~~~l~~~i~----~~t~lv~i~~~~n~tG~~~~----~~~i~~l~~~~g~~~ivD~a~~-~g~~--~--~~~~ 209 (401)
T PRK10874 148 -----PDVDLLPELIT----PRTRILALGQMSNVTGGCPD----LARAITLAHQAGMVVMVDGAQG-AVHF--P--ADVQ 209 (401)
T ss_pred -----CCHHHHHHhcC----cCcEEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEECCcc-cccc--c--CCch
Confidence 11366776664 34567777777777887877 8999999999999999999996 4332 1 1222
Q ss_pred CCCCCeeeec--ccCCCcccceeEEEeChhHHHHhhhccCC-----------------CCccCcCCCCCCcHHHHHHHHH
Q 013204 263 SIKPDLVSFA--KALSSAYMPIGAILVSPEVSEVIHSQSNT-----------------LGSFSHGFTYSGHPVSCAVAIE 323 (447)
Q Consensus 263 ~~~~d~v~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~t~~~~~~~~~aa~a 323 (447)
.+.+|++++| |.+ |+ .++|++++++++++.+...... +..+. ..+.+..++++..+
T Consensus 210 ~~~~d~~~~s~~K~~-gp-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e---~Gt~~~~~~~al~~ 284 (401)
T PRK10874 210 ALDIDFYAFSGHKLY-GP-TGIGVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFE---AGTPNVAGVIGLSA 284 (401)
T ss_pred hcCCCEEEEeccccc-CC-CccEEEEEchHHHhcCCCeecCCcceEeeccCccCCCCChhhcc---CCCcCHHHHHHHHH
Confidence 3457888766 955 43 4679999999988766421000 00011 11345556666666
Q ss_pred HHHHHhhh---cHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCc
Q 013204 324 ALKIYKER---NIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGM 400 (447)
Q Consensus 324 ~l~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 400 (447)
+++.+.+. ...++.+++.+++++.|++++...... ...+.++.+.+.... ...+.+.|.++||
T Consensus 285 al~~l~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~--~~~~~i~~~~~~~~~------------~~~~~~~L~~~gI 350 (401)
T PRK10874 285 ALEWLADIDINQAESWSRSLATLAEDALAKLPGFRSFR--CQDSSLLAFDFAGVH------------HSDLVTLLAEYGI 350 (401)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeC--CCCCcEEEEEECCcC------------HHHHHHHHHHCCc
Confidence 67665443 345566666777777776653221111 122334455543211 3457788899999
Q ss_pred eEEee-------------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 401 LVRVS-------------GDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 401 ~~~~~-------------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.++++ .+.+|+++...+|++||++++++|+++++.+
T Consensus 351 ~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~edid~ll~al~~~~~~~ 399 (401)
T PRK10874 351 ALRAGQHCAQPLLAALGVTGTLRASFAPYNTQSDVDALVNAVDRALELL 399 (401)
T ss_pred EEeccccchHHHHHHhCCCCEEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence 98763 2469999999999999999999999988754
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.2e-20 Score=176.23 Aligned_cols=322 Identities=16% Similarity=0.164 Sum_probs=204.5
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHH
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQV 112 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al 112 (447)
.+++||..+. +++| .+|.+.+++.+.+.....+ +.....++.+.+++++ ...++++++++|+++++..++
T Consensus 19 ~~~~~l~~~~--~~~~-~p~~~~~a~~~~~~~~~~Y------~~~~~~~lr~~ia~~~-~~~~~~i~it~Ga~~~l~~~~ 88 (354)
T PRK06358 19 NMILDFSANI--NPLG-VPESLKQAITENLDKLVEY------PDPDYLELRKRIASFE-QLDLENVILGNGATELIFNIV 88 (354)
T ss_pred cceEEecCCC--CCCC-CCHHHHHHHHHHHHhhhcC------CCccHHHHHHHHHHHh-CCChhhEEECCCHHHHHHHHH
Confidence 4579997654 5566 3789999998877543222 2233567888888886 457789999999999999888
Q ss_pred HHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHH
Q 013204 113 KLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 192 (447)
Q Consensus 113 ~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (447)
+.. .+ +.|++.+|.|+.+.......+.. . ..+++... +.+. .+ ++
T Consensus 89 ~~~---------~~-~~v~i~~P~y~~~~~~~~~~g~~-~------------~~~~~~~~----------~~~~-~d-~~ 133 (354)
T PRK06358 89 KVT---------KP-KKVLILAPTFAEYERALKAFDAE-I------------EYAELTEE----------TNFA-AN-EI 133 (354)
T ss_pred HHh---------CC-CcEEEecCChHHHHHHHHHcCCe-e------------EEEeCccc----------cCCC-cc-HH
Confidence 764 22 47889999998776444332211 1 01111000 0000 00 12
Q ss_pred HHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-ccccCCCCCCee--
Q 013204 193 LEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-GCDKYSIKPDLV-- 269 (447)
Q Consensus 193 le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~~~~~~~~~d~v-- 269 (447)
+.+.+. ++...++++.|.|++| ...+.+.+++|.++|++|++++|+||+|..|...+... ........+.++
T Consensus 134 ~~~~~~---~~~~~v~~~~P~NPtG--~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~ 208 (354)
T PRK06358 134 VLEEIK---EEIDLVFLCNPNNPTG--QLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIII 208 (354)
T ss_pred HHHhhc---cCCCEEEEeCCCCCCC--CccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEE
Confidence 222222 2233345777866665 45688999999999999999999999999875443211 111122223333
Q ss_pred -eecccCCCcccceeEEEeC-hhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHH
Q 013204 270 -SFAKALSSAYMPIGAILVS-PEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE-RNIVEQVNKIAPKFQD 346 (447)
Q Consensus 270 -~~sK~l~gg~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-~~~~~~~~~~~~~l~~ 346 (447)
+|||.++.+++|+|+++++ +.+++.+... . ..+..+.+++.++.++++.-+. ++..+.++++.+.+.+
T Consensus 209 ~S~SK~~gl~G~RiG~lv~~~~~~~~~~~~~-------~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~ 279 (354)
T PRK06358 209 RAFTKFFAIPGLRLGYGLTSNKNLAEKLLQM-------R--EPWSINTFADLAGQTLLDDKEYIKKTIQWIKEEKDFLYN 279 (354)
T ss_pred EechhhccCcchhheeeecCCHHHHHHHHHh-------C--CCCcchHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 5899988433999999985 6777777531 1 2455667777777777742111 2334455556666666
Q ss_pred hHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-------CEEEEecCCCCCH
Q 013204 347 GVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-------DNIMMSPPFIMSP 419 (447)
Q Consensus 347 ~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-------~~iR~~~~~~~t~ 419 (447)
.|+++ +......+.|.++.+.+.+ ...+.+.|+++||.+.++. +.+|++ ..++
T Consensus 280 ~L~~~---~~~~~~~~~g~f~~~~~~~--------------~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRls---~~~~ 339 (354)
T PRK06358 280 GLSEF---KGIKVYKPSVNFIFFKLEK--------------PIDLRKELLKKGILIRSCSNYRGLDENYYRVA---VKSR 339 (354)
T ss_pred HHhcC---CCcEEcCCcceEEEEEcCc--------------hHHHHHHHHHCCeEEEECCCCCCCCCCEEEEE---eCCH
Confidence 66654 2222334566776666542 1357888999999999752 459999 6788
Q ss_pred HHHHHHHHHHHHHH
Q 013204 420 EEVDELISKYGKAL 433 (447)
Q Consensus 420 e~i~~~~~~l~~~l 433 (447)
++.++++++|++.+
T Consensus 340 ~~~~~l~~~l~~~~ 353 (354)
T PRK06358 340 EDNKKLLKALEVIL 353 (354)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998765
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.7e-20 Score=180.36 Aligned_cols=340 Identities=14% Similarity=0.080 Sum_probs=208.9
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcc-cc-c---CcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhh
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY-HS-F---WNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSE 106 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~-~---~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGse 106 (447)
+..|||..+. |..++.+++++.+........ ++ . .....+...++.+.+++++...+.++++|++|+++
T Consensus 23 ~~iYld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~ 96 (406)
T PRK09295 23 PLAYLDSAAS------AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTE 96 (406)
T ss_pred ceEEEeCccc------ccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHH
Confidence 4589998655 346789999999888653211 11 0 00112345567778888774335679999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh--h-cccCCccccCCCCCCCCcceecCCCCcccCCCCCCChh
Q 013204 107 ANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA--A-SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEE 183 (447)
Q Consensus 107 A~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (447)
++..+++...... . .++++||+.+..||...... + ...|... ..++....+.
T Consensus 97 ~l~~~~~~~~~~~---~-~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v------------~~v~~~~~~~--------- 151 (406)
T PRK09295 97 GINLVANSWGNSN---V-RAGDNIIISEMEHHANIVPWQMLCARVGAEL------------RVIPLNPDGT--------- 151 (406)
T ss_pred HHHHHHHHhhhhc---C-CCcCEEEECcchhhHHHHHHHHHHHHcCcEE------------EEEecCCCCC---------
Confidence 9998887542100 1 23467888877777652211 1 1111111 1111111000
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCC
Q 013204 184 EYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYS 263 (447)
Q Consensus 184 ~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~ 263 (447)
.+++++++.+. +++.+|++..+++..|.+.+ +++|.++|+++|+++++|++|+ +|.. .... ..
T Consensus 152 ----~d~~~l~~~i~----~~t~lv~l~~~~n~tG~~~~----~~~i~~~~~~~~~~vivD~a~~-~g~~--~~~~--~~ 214 (406)
T PRK09295 152 ----LQLETLPALFD----ERTRLLAITHVSNVLGTENP----LAEMIALAHQHGAKVLVDGAQA-VMHH--PVDV--QA 214 (406)
T ss_pred ----CCHHHHHHhcC----CCcEEEEEecchhcccccCC----HHHHHHHHHHcCCEEEEEcccc-cCcc--ccCc--hh
Confidence 01366776664 24567777788788888877 8999999999999999999996 5433 2222 23
Q ss_pred CCCCeeeec--ccCCCcccceeEEEeChhHHHHhhhccCCC---Cc--c----------CcCCCCCCcHHHHHHHHHHHH
Q 013204 264 IKPDLVSFA--KALSSAYMPIGAILVSPEVSEVIHSQSNTL---GS--F----------SHGFTYSGHPVSCAVAIEALK 326 (447)
Q Consensus 264 ~~~d~v~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~~~~---~~--~----------~~~~t~~~~~~~~~aa~a~l~ 326 (447)
..+|++++| |.+ |+ .++|+++.++++++.+....... .. . ....+-+.+..++.+..++++
T Consensus 215 ~~~D~~~~s~~K~~-gp-~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~ 292 (406)
T PRK09295 215 LDCDFYVFSGHKLY-GP-TGIGILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALD 292 (406)
T ss_pred cCCCEEEeehhhcc-CC-CCcEEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHH
Confidence 457888766 944 44 46899999998876653110000 00 0 000122456677777788888
Q ss_pred HHhh---hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEE
Q 013204 327 IYKE---RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR 403 (447)
Q Consensus 327 ~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~ 403 (447)
.+.+ +...++.+++.+++++.|+++....+.... ....++.+.+.... ...+.+.|.++||.++
T Consensus 293 ~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~-~~~~iv~~~~~~~~------------~~~~~~~L~~~gI~v~ 359 (406)
T PRK09295 293 YVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQ-NRLGVIAFNLGKHH------------AYDVGSFLDNYGIAVR 359 (406)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC-CCceEEEEEECCcC------------HHHHHHHHHhCCeEEe
Confidence 7665 335567777777887777765322222211 12344455543211 3457778889999987
Q ss_pred eeC-------------CEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 404 VSG-------------DNIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 404 ~~g-------------~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
.+. +.+|+++++.+|++|||+++++|++...
T Consensus 360 ~g~~c~~~~~~~~~~~~~iRiS~~~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 360 TGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred ccccchHHHHHHHCCCCEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 531 3699999999999999999999988643
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-19 Score=178.72 Aligned_cols=338 Identities=13% Similarity=0.062 Sum_probs=202.7
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-c-CCC-CeEEEeCChhhH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-A-SKM-AKVFFTNSGSEA 107 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~-~~~-~~v~~~~sGseA 107 (447)
.|+.++||..+. ..++ .++.+.+++.+.+..... |+...+..+....+++.+.+.+. . ..+ ++|++++|+++|
T Consensus 27 ~~~~~i~l~~~~--p~~~-~~~~~~~~~~~~~~~~~~-Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~a 102 (396)
T PRK09147 27 ADLPPISLSIGE--PKHP-TPAFIKDALAANLDGLAS-YPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREA 102 (396)
T ss_pred cCCCeEecCCCC--CCCC-CCHHHHHHHHHHhhhhcC-CCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHH
Confidence 488999998775 3344 467888888876654322 22222334445555555554432 1 344 489999999999
Q ss_pred HHHHHHHHHHHHHhcCCC--CcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHH
Q 013204 108 NDTQVKLVWYYNNALGRP--NKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEY 185 (447)
Q Consensus 108 ~~~Al~~~~~~~~~~~~~--~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (447)
+..+++.+. . + .++.|++.+|+|.+........+... ..+++... +.+
T Consensus 103 l~~~~~~l~------~-~~~~gd~vlv~~P~y~~~~~~~~~~g~~~-------------~~vp~~~~----------~~~ 152 (396)
T PRK09147 103 LFAFAQTVI------D-RDGPGPLVVCPNPFYQIYEGAALLAGAEP-------------YFLNCDPA----------NNF 152 (396)
T ss_pred HHHHHHHHc------C-CCCCCCEEEEcCCCccchHHHHHhcCCEE-------------EEeccCcc----------ccC
Confidence 999998764 1 2 14679999999988754443322211 11221100 000
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc--ccc-cc--
Q 013204 186 STRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT--MFG-CD-- 260 (447)
Q Consensus 186 ~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~--~~~-~~-- 260 (447)
..+++.+++.+. ++...+++++|.|++| ...+.+.+++|.++|++|++++|.||+|..+...+. ... ..
T Consensus 153 -~~d~~~l~~~~~---~~~k~i~l~nP~NPTG--~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 226 (396)
T PRK09147 153 -APDFDAVPAEVW---ARTQLLFVCSPGNPTG--AVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAA 226 (396)
T ss_pred -ccCHHHHHHHHh---hccEEEEEcCCCCCcC--ccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhc
Confidence 011355655543 2334455566666665 566889999999999999999999999987643331 111 10
Q ss_pred -cCCC--CCCee---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcH
Q 013204 261 -KYSI--KPDLV---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNI 333 (447)
Q Consensus 261 -~~~~--~~d~v---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~ 333 (447)
..+. .+.++ +|||.++.+++++|++++++++++.+... ....+++.+++++.++.+.+..-. -.+.
T Consensus 227 ~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~~~~~~l~~~~~~~-------~~~~~~~~~~~~q~a~~~~~~~~~~~~~~ 299 (396)
T PRK09147 227 AELGRDDFKRLVVFHSLSKRSNVPGLRSGFVAGDAALLKKFLLY-------RTYHGCAMPPAVQAASIAAWNDEAHVREN 299 (396)
T ss_pred cccCccccccEEEEeccccccCCccceeeeecCCHHHHHHHHHH-------hhhcccCCCHHHHHHHHHHhcchhHHHHH
Confidence 1111 12233 58998766559999999999998887531 112244566777777666653100 0122
Q ss_pred HHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEee-------
Q 013204 334 VEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVS------- 405 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~------- 405 (447)
.+.++++.+.+.+.|++. ... .....|.++++++.. . ...+.+.|+ ++||.+.++
T Consensus 300 ~~~~~~~~~~~~~~L~~~--~~~--~~p~~g~f~~~~~~~-~------------~~~~~~~ll~~~gv~v~pg~~f~~~~ 362 (396)
T PRK09147 300 RALYREKFDAVTPILAPV--LDV--QLPDAGFYLWAKVPG-D------------DTEFARRLYADYNVTVLPGSYLAREA 362 (396)
T ss_pred HHHHHHHHHHHHHHHHHh--cCC--CCCCeeEEEEEECCC-C------------HHHHHHHHHHhCCEEEeCCccccccc
Confidence 344444445555555442 111 123346677777651 1 234667765 679998764
Q ss_pred ------CCEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 406 ------GDNIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 406 ------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
.+.+|++ +..+++++++++++|.+.+.
T Consensus 363 ~~~~~~~~~iRi~--~~~~~~~l~~~l~rl~~~~~ 395 (396)
T PRK09147 363 HGVNPGAGRVRIA--LVAPLAECVEAAERIVDFCR 395 (396)
T ss_pred cCCCCCCCeEEEE--ecCCHHHHHHHHHHHHHHhc
Confidence 1469999 56789999999999988763
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-19 Score=176.12 Aligned_cols=353 Identities=14% Similarity=0.081 Sum_probs=207.9
Q ss_pred CCCCEEEecCCcccccc-CCCCCHHHHHHHHHHHhcCC-cccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhh
Q 013204 30 VNGKKYLDSLAGLWCTA-LGGSEPRLVAAATAQLNTLP-FYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSE 106 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~-lG~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGse 106 (447)
..|+.+++|..|..... .-..++.+++++.+.+.... ..+....+..+....+++.+...++ ...++++++++|+++
T Consensus 28 ~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 107 (409)
T PLN02656 28 ENGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQ 107 (409)
T ss_pred ccCCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHH
Confidence 46789999977643211 12357889999988876521 1222112233333444444443321 235679999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHH
Q 013204 107 ANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYS 186 (447)
Q Consensus 107 A~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (447)
|+..++.... ..++.|++.++.|..........+.... .++.... .. +
T Consensus 108 al~~~~~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~-------------~i~~~~~-------~~---~- 155 (409)
T PLN02656 108 AIDVALSMLA--------RPGANILLPRPGFPIYELCAAFRHLEVR-------------YVDLLPE-------KG---W- 155 (409)
T ss_pred HHHHHHHHHh--------CCCCeEEEeCCCCCcHHHHHHHcCCEEE-------------EEeCCCc-------CC---C-
Confidence 9999988763 3347899999999766433332221111 1111000 00 0
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-ccccCCCC
Q 013204 187 TRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-GCDKYSIK 265 (447)
Q Consensus 187 ~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~~~~~~~~ 265 (447)
..+++++++.+. +++..++++.|.|++| ...+.+.+++|.++|++||+++|+||+|.+|...+..+ ....++-.
T Consensus 156 ~~d~~~l~~~~~---~~~~~v~l~~P~NPtG--~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~ 230 (409)
T PLN02656 156 EVDLDAVEALAD---QNTVALVIINPGNPCG--NVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSI 230 (409)
T ss_pred CCCHHHHHHHhc---cCceEEEEECCCCCCC--CCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhccc
Confidence 001366666554 3456677778866665 44578889999999999999999999999875544322 11111111
Q ss_pred CCee---eecccCCCcccceeEEEeC--------hhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh---hh
Q 013204 266 PDLV---SFAKALSSAYMPIGAILVS--------PEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK---ER 331 (447)
Q Consensus 266 ~d~v---~~sK~l~gg~~~~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~---~~ 331 (447)
..++ +|||.++.+++|+|+++++ +++++.+... .. ...+.+.+++.++.++|+... -.
T Consensus 231 ~~vi~~~SfSK~f~~pGlRiG~~i~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~s~~~q~a~~~~l~~~~~~~~~ 302 (409)
T PLN02656 231 VPVLTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPKIVERIKKY-------FD-ILGGPATFIQAAVPTILEQTDESFFK 302 (409)
T ss_pred CcEEEEcccchhccCcceeEEEEEEeCcccccccHHHHHHHHHH-------Hh-hhcCCCHHHHHHHHHHHhcCcHHHHH
Confidence 1222 5899866655999999983 5677776531 11 112346677777777775211 12
Q ss_pred cHHHHHHHHHHHHHHhHhhccCCCcee-eEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC---
Q 013204 332 NIVEQVNKIAPKFQDGVKAFSDSPIIG-EIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--- 406 (447)
Q Consensus 332 ~~~~~~~~~~~~l~~~L~~l~~~~~~~-~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g--- 406 (447)
+..+.++++.+.+.+.|+.+ +... ...+. |.++++++....... ... ....+.+.+.++||.+.|+.
T Consensus 303 ~~~~~~~~~r~~~~~~L~~~---~~~~~~~~p~gg~~~w~~l~~~~~~~--~~~---~~~~~~~~l~~~gV~v~pg~~fg 374 (409)
T PLN02656 303 KTINILKQSSDICCDRIKEI---PCITCPHKPEGSMAVMVKLNLSLLED--ISD---DIDFCFKLAREESVIILPGTAVG 374 (409)
T ss_pred HHHHHHHHHHHHHHHHHhhC---CCCcCCcCCCeEEEEEEecchhhcCC--CCC---HHHHHHHHHHhCCEEEecchhcC
Confidence 23345555555666666554 2111 12333 455666664221000 000 11234567788999999863
Q ss_pred --CEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 407 --DNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 407 --~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
+.+|++ +..+++++++++++|++++....
T Consensus 375 ~~~~iRi~--~~~~~e~l~eal~rl~~~~~~~~ 405 (409)
T PLN02656 375 LKNWLRIT--FAADPSSLEEALGRIKSFYLRHS 405 (409)
T ss_pred CCCeEEEE--eCCCHHHHHHHHHHHHHHHHHhc
Confidence 579999 55689999999999999886543
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.4e-20 Score=176.79 Aligned_cols=327 Identities=15% Similarity=0.126 Sum_probs=201.2
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHH
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEAND 109 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~ 109 (447)
.+++.++|++.|- +++| .+|.+.+++.+.+.....+ +.....++.+.+++.+ ..+++++++++|+++++.
T Consensus 17 ~~~~~~i~l~~~~--~~~~-~p~~~~~a~~~~~~~~~~y------~~~~~~~lr~~ia~~~-~~~~~~i~it~Ga~~~l~ 86 (356)
T PRK08056 17 ISPDQLLDFSANI--NPLG-MPVSLKRAIIDNLDCAERY------PDVEYRHLHQALARHH-QVPASWILAGNGETESIF 86 (356)
T ss_pred CChhhEEEecccc--CCCC-CCHHHHHHHHHHHHhcccC------cCccHHHHHHHHHHHh-CcChhhEEECCCHHHHHH
Confidence 4567899997653 6677 6888999998877653222 2223677888888886 456789999999999998
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (447)
.+++.+. ++ .+++.+|+|..+....... |... ..++......+ ..+
T Consensus 87 ~~~~~l~--------~g--~viv~~P~y~~~~~~~~~~-g~~~------------~~v~~~~~~~~-----~~~------ 132 (356)
T PRK08056 87 AVVSGLK--------PR--RAMIVTPGFAEYRRALQQV-GCEI------------RRYSLREADGW-----QLT------ 132 (356)
T ss_pred HHHHHhC--------CC--CEEEeCCCcHHHHHHHHHc-CCeE------------EEEecccccCC-----Ccc------
Confidence 8887541 32 4677889987665433322 2111 11111000000 000
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV 269 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v 269 (447)
+++.+.+. ++...+++..|.|++| ...+.+.+++|.++|++|++++|+||+|.+|...+.............++
T Consensus 133 -~~~~~~~~---~~~k~v~l~~p~NPTG--~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~ 206 (356)
T PRK08056 133 -DAILEALT---PDLDCLFLCTPNNPTG--LLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWV 206 (356)
T ss_pred -HHHHHhcc---CCCCEEEEeCCcCCCC--CCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCCEEE
Confidence 12223232 2333444556656655 36688999999999999999999999998874433211100111112233
Q ss_pred --eecccCCCcccceeEEEeC-hhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHH
Q 013204 270 --SFAKALSSAYMPIGAILVS-PEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVEQVNKIAPKFQ 345 (447)
Q Consensus 270 --~~sK~l~gg~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~~~~~~~~~l~ 345 (447)
+|||.++..++++|+++++ +++++.+... ...+..+.+++.++.++++.-. ..+..+.++++.+++.
T Consensus 207 ~~S~SK~~~~~G~RiG~~v~~~~~~~~~l~~~---------~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~ 277 (356)
T PRK08056 207 LRSLTKFYAIPGLRLGYLVNSDDAAVARMRRQ---------QMPWSINAFAALAGEVILQDRAYQQATWQWLAEEGARFY 277 (356)
T ss_pred EEechhhccCcchhheeeecCCHHHHHHHHHh---------CCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 5899988444899999984 6777777531 1234556667766666664110 1233455566666676
Q ss_pred HhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-------CEEEEecCCCCC
Q 013204 346 DGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-------DNIMMSPPFIMS 418 (447)
Q Consensus 346 ~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-------~~iR~~~~~~~t 418 (447)
+.|+.+.. +...+..|.++.+.+..+ ...+.+.|+++||.+.++. +.+|++ ..+
T Consensus 278 ~~L~~~~~---~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis---~~~ 338 (356)
T PRK08056 278 QALCALPL---LTVWPGRANYLFLRCERP-------------DIDLQRALLTQRILIRSCANYPGLDSRYYRVA---IRS 338 (356)
T ss_pred HHHhcCCC---cEEcCCCCcEEEEEcCCC-------------hHHHHHHHHHCCeEEEECCCCCCCCCCEEEEE---EcC
Confidence 77765522 222344566666665421 2357888999999988652 469999 457
Q ss_pred HHHHHHHHHHHHHHHH
Q 013204 419 PEEVDELISKYGKALK 434 (447)
Q Consensus 419 ~e~i~~~~~~l~~~l~ 434 (447)
+++.+.+++.|+++++
T Consensus 339 ~~~~~~l~~~l~~~~~ 354 (356)
T PRK08056 339 AAENERLLAALRNVLT 354 (356)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 8999999999987653
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.6e-20 Score=178.24 Aligned_cols=335 Identities=17% Similarity=0.127 Sum_probs=197.6
Q ss_pred EEEecCCccccccCCCCCHHHHHHHHHH-HhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHH
Q 013204 34 KYLDSLAGLWCTALGGSEPRLVAAATAQ-LNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQV 112 (447)
Q Consensus 34 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al 112 (447)
+++||+++... ..+|.+.+++.+. ..... .++.+...++++.+++++ +.+.++++++|++++..++
T Consensus 6 ~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~------~~~~~~~~~l~~~la~~~---~~~~~~~~~~Gs~a~~~~l 72 (353)
T PLN02721 6 RVVDLRSDTVT----KPTDAMRAAMANAEVDDDV------LGYDPTALRLEEEMAKIF---GKEAALFVPSGTMGNLISV 72 (353)
T ss_pred hhhhhhccccc----CCCHHHHHHHHhccCCCcc------cCCCHHHHHHHHHHHHHh---CCceeEEecCccHHHHHHH
Confidence 56788888654 2578999998764 22111 124556789999999997 3446788999999998887
Q ss_pred HHHHHHHHhcCCCCcceEEEEcCCCccchhh--hhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHH
Q 013204 113 KLVWYYNNALGRPNKKKFIARQKSYHGSTLI--AASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190 (447)
Q Consensus 113 ~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (447)
.... . .+++.|++.+++|...... .....|... ..++....+ ..++
T Consensus 73 ~~~~------~-~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~------------~~v~~~~~~-------------~~d~ 120 (353)
T PLN02721 73 LVHC------D-VRGSEVILGDNSHIHLYENGGISTLGGVHP------------RTVKNNEDG-------------TMDL 120 (353)
T ss_pred HHHc------c-CCCCeEEEcCccceehhcccchhhhcCcee------------EecCCCcCC-------------CcCH
Confidence 7653 1 1347788888876332211 111111100 111110000 0114
Q ss_pred HHHHHHHHhhC---CCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc-ccccccCCCCC
Q 013204 191 NNLEDLILKEG---PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT-MFGCDKYSIKP 266 (447)
Q Consensus 191 ~~le~~l~~~~---~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~-~~~~~~~~~~~ 266 (447)
+++++.+.... .+++++|++++++++.|...++.+.+++|.++|++||+++|+||+|. ++.... ...........
T Consensus 121 ~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~-~~~~~~~~~~~~~~~~~~ 199 (353)
T PLN02721 121 DAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARI-FNASVALGVPVHRLVKAA 199 (353)
T ss_pred HHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhh-hcchhhhCCCHHHHhhhC
Confidence 77777775321 13567888888755543466688899999999999999999999986 422110 00001001123
Q ss_pred C--eeeecccCCCcccceeE-EEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 013204 267 D--LVSFAKALSSAYMPIGA-ILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPK 343 (447)
Q Consensus 267 d--~v~~sK~l~gg~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~ 343 (447)
| +++++|++++ ++|+ +++++++++.+..... ...+... .....+++++.+++... +..++..++.++
T Consensus 200 d~~~~s~sK~l~~---~~G~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~ 269 (353)
T PLN02721 200 DSVSVCLSKGLGA---PVGSVIVGSKSFIRKAKRLRK----TLGGGMR-QVGVLAAAALVALQENV--PKLEDDHKKAKL 269 (353)
T ss_pred CEEEEecccccCC---ceeeEEecCHHHHHhHHHHHH----hcCCCee-hhHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 4 3468899874 4565 6678888776543111 0111111 11122333344443221 122333556677
Q ss_pred HHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEEEecCCCCCHHHH
Q 013204 344 FQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIMMSPPFIMSPEEV 422 (447)
Q Consensus 344 l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR~~~~~~~t~e~i 422 (447)
+.+.|+++..... ......+.++.+.+...... ....+.++|.++||.+.+.+ ..+|+++++.++++++
T Consensus 270 l~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~L~~~gi~v~~~~~~~lR~~~~~~~~~~~i 339 (353)
T PLN02721 270 LAEGLNQIKGLRV-NVAAVETNIVYFDITDGSRI---------TAEKLCKSLEEHGVLLMPGNSSRIRVVTHHQISDSDV 339 (353)
T ss_pred HHHHHHhCCCcEE-ecCCccceEEEEEccCCccc---------cHHHHHHHHHhCCcEEecCCCceEEEEecCcCCHHHH
Confidence 7787776632211 01123345666666431100 14568899999999999886 5699999989999999
Q ss_pred HHHHHHHHHHHH
Q 013204 423 DELISKYGKALK 434 (447)
Q Consensus 423 ~~~~~~l~~~l~ 434 (447)
++++++|++++.
T Consensus 340 ~~~~~~l~~~~~ 351 (353)
T PLN02721 340 QYTLSCFQQAAL 351 (353)
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-20 Score=180.66 Aligned_cols=324 Identities=16% Similarity=0.137 Sum_probs=194.7
Q ss_pred ecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHH
Q 013204 37 DSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVW 116 (447)
Q Consensus 37 D~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~ 116 (447)
||+|. +++| .+|++++++.+...... ..++.+...++++.+++.+. .++++++++|++|+..+++..+
T Consensus 1 ~~~~~---~~~~-~~~~v~~a~~~~~~~~~-----~~~~~~~~~~l~~~~a~~~g---~~~~~~~~~gt~a~~~~~~~l~ 68 (338)
T cd06502 1 DFRSD---TVTG-PTPEMLEAMAAANVGDD-----VYGEDPTTAKLEARAAELFG---KEAALFVPSGTAANQLALAAHT 68 (338)
T ss_pred Ccccc---cCCC-CCHHHHHHHHhcccCCc-----ccCCCHHHHHHHHHHHHHhC---CCeEEEecCchHHHHHHHHHhc
Confidence 67666 7788 78999999988653221 12355678899999999874 5688999999999999998763
Q ss_pred HHHHhcCCCCcceEEEEcCCCccchhh--hhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHH
Q 013204 117 YYNNALGRPNKKKFIARQKSYHGSTLI--AASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLE 194 (447)
Q Consensus 117 ~~~~~~~~~~~~~vi~~~~~yhg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le 194 (447)
.+++.|++..+.|...... .....|... ..++... + ..+.++++
T Consensus 69 --------~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~------------~~v~~~~-~-------------~~d~~~l~ 114 (338)
T cd06502 69 --------QPGGSVICHETAHIYTDEAGAPEFLSGVKL------------LPVPGEN-G-------------KLTPEDLE 114 (338)
T ss_pred --------CCCCeEEEecCcceeeecCCcHHHHcCceE------------EeecCCC-C-------------cCCHHHHH
Confidence 2346677655544222211 011112111 1111100 0 01136777
Q ss_pred HHHHhhC---CCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCC--CccccccccccCCCCCCee
Q 013204 195 DLILKEG---PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF--GRLGTMFGCDKYSIKPDLV 269 (447)
Q Consensus 195 ~~l~~~~---~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~--g~~g~~~~~~~~~~~~d~v 269 (447)
+++.... ..++++|++++.++.||.. +.+.+++|.++|++||+++|+||+|..+ +..|. ........+|++
T Consensus 115 ~~i~~~~~~~~~~~~~v~l~~p~n~g~~~--~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~--~~~~~~~~~d~~ 190 (338)
T cd06502 115 AAIRPRDDIHFPPPSLVSLENTTEGGTVY--PLDELKAISALAKENGLPLHLDGARLANAAAALGV--ALKTYKSGVDSV 190 (338)
T ss_pred HHhhccCCCcCCcceEEEEEeecCCcccc--CHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCC--CHHHHHhcCCEE
Confidence 7765311 1245666666665555533 7788999999999999999999987411 11121 111112245655
Q ss_pred --eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHh
Q 013204 270 --SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDG 347 (447)
Q Consensus 270 --~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~ 347 (447)
+++|.++.. ..+++++++++++.+..... ..++++..+++.++++.++|+.-...+..+++.++.+++.+.
T Consensus 191 ~~s~sK~~~~~--~g~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~ 263 (338)
T cd06502 191 SFCLSKGGGAP--VGAVVVGNRDFIARARRRRK-----QAGGGMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEA 263 (338)
T ss_pred EEeccccCCCc--cceEEECCHHHHHHHHHHHH-----HhCCChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 567988753 22345578888887763210 112344556667777777775311233456777777888888
Q ss_pred HhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH---HcCceEEeeC-CEEEEecCCCCCHHHHH
Q 013204 348 VKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE---KHGMLVRVSG-DNIMMSPPFIMSPEEVD 423 (447)
Q Consensus 348 L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~Gi~~~~~g-~~iR~~~~~~~t~e~i~ 423 (447)
|+++. .. .....+.+..+.+.... .....+.+.+. ++|+++.+.+ +.+|++|++.+++++++
T Consensus 264 L~~~~-~~---~~~~~~~~~~v~~~~~~----------~~~~~l~~~l~~~~~~gi~~~~~~~~~lRi~~~~~~~~~~i~ 329 (338)
T cd06502 264 LEELG-GL---ESEVQTNIVLLDPVEAN----------AVFVELSKEAIERRGEGVLFYAWGEGGVRFVTHWDTTEEDVD 329 (338)
T ss_pred HHhcC-CC---cccccCCeEEEecCCcc----------HHHHHHHHHHHHhhhCCEEEEecCCCeEEEEeecCCCHHHHH
Confidence 87762 11 11233444444432111 01223334443 6899998765 67999999999999999
Q ss_pred HHHHHHHH
Q 013204 424 ELISKYGK 431 (447)
Q Consensus 424 ~~~~~l~~ 431 (447)
+++++|++
T Consensus 330 ~~~~~l~~ 337 (338)
T cd06502 330 ELLSALKA 337 (338)
T ss_pred HHHHHHhc
Confidence 99999865
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.5e-20 Score=177.85 Aligned_cols=327 Identities=16% Similarity=0.122 Sum_probs=198.3
Q ss_pred ccccCCCCCHHHHHHHHHH-HhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhHHHHHHHHHHHHHH
Q 013204 43 WCTALGGSEPRLVAAATAQ-LNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEANDTQVKLVWYYNN 120 (447)
Q Consensus 43 ~~~~lG~~~p~v~~a~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA~~~Al~~~~~~~~ 120 (447)
+..++. .+|.++.++.+. .......+....+..+....+++.+...+. ....+.+++++||++|+..+++.+.
T Consensus 6 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~---- 80 (350)
T cd00609 6 GEPDFP-PPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALL---- 80 (350)
T ss_pred CCCCCC-CCHHHHHHHHHHhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhC----
Confidence 335555 456666665541 111111111112223333344444443321 1236689999999999999998773
Q ss_pred hcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhh
Q 013204 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE 200 (447)
Q Consensus 121 ~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~ 200 (447)
..+++|++..++|++........... +..++..+.... . .. .+.+++.
T Consensus 81 ----~~g~~vl~~~~~~~~~~~~~~~~~~~-------------~~~i~~~~~~~~-----~-~~-----~~~~~~~---- 128 (350)
T cd00609 81 ----NPGDEVLVPDPTYPGYEAAARLAGAE-------------VVPVPLDEEGGF-----L-LD-----LELLEAA---- 128 (350)
T ss_pred ----CCCCEEEEcCCCchhHHHHHHHCCCE-------------EEEEecccccCC-----c-cC-----HHHHHhh----
Confidence 23467888888877665433322211 111221111000 0 00 0222222
Q ss_pred CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccc-cccCC-CCCCee--eecccCC
Q 013204 201 GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFG-CDKYS-IKPDLV--SFAKALS 276 (447)
Q Consensus 201 ~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~-~~~~~-~~~d~v--~~sK~l~ 276 (447)
..+++++|++++.++..|.+ .+.+.+++|.++|+++|+++|+||++++++..+.... ....+ ...|++ +++|.++
T Consensus 129 ~~~~~~~v~i~~~~~~tG~~-~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~ 207 (350)
T cd00609 129 KTPKTKLLYLNNPNNPTGAV-LSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFG 207 (350)
T ss_pred cCccceEEEEECCCCCCCcc-cCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccC
Confidence 23567889998888888864 5678899999999999999999999998765443321 01111 123444 5789998
Q ss_pred -CcccceeEEEeCh-hHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHH--hhhcHHHHHHHHHHHHHHhHhhcc
Q 013204 277 -SAYMPIGAILVSP-EVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIY--KERNIVEQVNKIAPKFQDGVKAFS 352 (447)
Q Consensus 277 -gg~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~--~~~~~~~~~~~~~~~l~~~L~~l~ 352 (447)
+| .++|++++++ ++++.+... ....++..+..++.++..+++.. ..+...+++.++.+++++.|++..
T Consensus 208 ~~g-~~~G~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 279 (350)
T cd00609 208 LPG-LRIGYLIAPPEELLERLKKL-------LPYTTSGPSTLSQAAAAAALDDGEEHLEELRERYRRRRDALLEALKELG 279 (350)
T ss_pred Ccc-cceEEEecCHHHHHHHHHHH-------HHhcccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45 7999999999 788887642 22235667777888777777765 234456677778888888887762
Q ss_pred CCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-------CCEEEEecCCCCCHHHHHHH
Q 013204 353 DSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-------GDNIMMSPPFIMSPEEVDEL 425 (447)
Q Consensus 353 ~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------g~~iR~~~~~~~t~e~i~~~ 425 (447)
.... .....|.+..+.+.... ....+.+.|.+.|+.+.+. +..+|++++.. ++||+++
T Consensus 280 ~~~~--~~~~~g~~~~~~~~~~~-----------~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~--~~~i~~~ 344 (350)
T cd00609 280 PLVV--VKPSGGFFLWLDLPEGD-----------DEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP--EEELEEA 344 (350)
T ss_pred Cccc--cCCCccEEEEEecCCCC-----------hHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC--HHHHHHH
Confidence 1111 23344666666654321 1344666777889998865 25799998866 9999999
Q ss_pred HHHHH
Q 013204 426 ISKYG 430 (447)
Q Consensus 426 ~~~l~ 430 (447)
+++|+
T Consensus 345 ~~al~ 349 (350)
T cd00609 345 LERLA 349 (350)
T ss_pred HHHhh
Confidence 99886
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-19 Score=177.24 Aligned_cols=342 Identities=15% Similarity=0.132 Sum_probs=204.5
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCC-cccccCcCCChHHHHHHHHHHHhcC-cCCCC-eEEEeCChhhHH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP-FYHSFWNRTTKPSLDLAKELLEMFT-ASKMA-KVFFTNSGSEAN 108 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~-~v~~~~sGseA~ 108 (447)
|+.++||..+ ++.+..+|.+.+++.+.+.... ..+....+..+....+++.+.+.+. ...++ ++++++|+++++
T Consensus 28 ~~~~i~l~~g---~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l 104 (395)
T PRK08175 28 GEDIIDFSMG---NPDGPTPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGL 104 (395)
T ss_pred CCCeEEcCCC---CCCCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHH
Confidence 6788999876 4445456778888887764321 1122212233344444444443322 13444 699999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHH
Q 013204 109 DTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188 (447)
Q Consensus 109 ~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (447)
..++.... ..+++|++.+|+|..........+... ..++.... + .
T Consensus 105 ~~~~~~~~--------~~gd~Vlv~~P~y~~~~~~~~~~g~~~-------------~~v~~~~~------~----~---- 149 (395)
T PRK08175 105 AHLMLATL--------DHGDTVLVPNPSYPIHIYGAVIAGAQV-------------RSVPLVEG------V----D---- 149 (395)
T ss_pred HHHHHHhC--------CCCCEEEEcCCCCcchHHHHHHcCCeE-------------EEEecccC------C----C----
Confidence 88877553 234789999999977654443322111 11111000 0 0
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEc-cccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-c-cccCCCC
Q 013204 189 LANNLEDLILKEGPETIAAFIAE-PVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-G-CDKYSIK 265 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~e-pv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~-~~~~~~~ 265 (447)
..+++++++....+ .++++++. |.|++ | ...+.+.+++|.++|++||+++|+||+|..+...+... . ....+.
T Consensus 150 ~~~~l~~~l~~~~~-~~~~v~i~~p~NPt-G-~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~- 225 (395)
T PRK08175 150 FFNELERAIRESYP-KPKMMILGFPSNPT-A-QCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGA- 225 (395)
T ss_pred cHHHHHHHHhhccC-CceEEEEeCCCCCC-C-CCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCc-
Confidence 13677777764333 34455555 55554 4 56688899999999999999999999998764333211 1 111111
Q ss_pred CC----eeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHHH
Q 013204 266 PD----LVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQVNK 339 (447)
Q Consensus 266 ~d----~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~~ 339 (447)
.| +-+|||.++.+++++|++++++++++.+... .....++.+..++.++.++++..+ -+.+.+.+++
T Consensus 226 ~~~~i~~~S~SK~~g~pGlRiG~~~~~~~l~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 298 (395)
T PRK08175 226 KDVAVEFFTLSKSYNMAGWRIGFMVGNPELVSALARI-------KSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKR 298 (395)
T ss_pred ccCEEEEeeccccccCcchhheeeeCCHHHHHHHHHH-------HhhcccCCCcHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 23 2368999975558999999999998887632 111233444455665666664211 1223455556
Q ss_pred HHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEeeC-------CEEEE
Q 013204 340 IAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVSG-------DNIMM 411 (447)
Q Consensus 340 ~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~g-------~~iR~ 411 (447)
+.+.+.+.|+.+ ++.......|.++.+.+.+..... ....+.++++ +.||.+.++. +.+|+
T Consensus 299 ~~~~~~~~L~~~---~~~~~~p~~g~~i~i~l~~~~~~~--------~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRi 367 (395)
T PRK08175 299 RRDVLVKGLHEA---GWMVEMPKASMYVWAKIPEPYAAM--------GSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRF 367 (395)
T ss_pred HHHHHHHHHHHc---CCcccCCCEEEEEEEECCcccCCC--------CHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEE
Confidence 666666767664 221112234667777776432100 1345777665 6899998751 46999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 412 SPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 412 ~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+ +..+++.+.+++++|.+.+.+
T Consensus 368 s--~~~~~~~~~~al~~l~~~l~~ 389 (395)
T PRK08175 368 A--LIENRDRIRQAIRGIKAMFRA 389 (395)
T ss_pred E--eCCCHHHHHHHHHHHHHHHHh
Confidence 9 456899999999999888853
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-19 Score=177.73 Aligned_cols=346 Identities=14% Similarity=0.107 Sum_probs=202.2
Q ss_pred CCEEEecCCccccccCC--CCCHHHHHHHHHHHhcCCc-ccccCcCCChHHHHHHHHHHHhcC-----cCCCCeEEEeCC
Q 013204 32 GKKYLDSLAGLWCTALG--GSEPRLVAAATAQLNTLPF-YHSFWNRTTKPSLDLAKELLEMFT-----ASKMAKVFFTNS 103 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG--~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~~v~~~~s 103 (447)
|+.++++..|.. ..++ -.+|++.+++.+++..... .++. .....++.+.+++++. ..+.++|++++|
T Consensus 51 ~~~~i~l~~G~P-~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~----~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G 125 (430)
T PLN00145 51 PRPVLPLGHGDP-SAFPCFRTAPEAEDAVAAALRSGKYNSYST----CVGLLPARRAIAEYLSRDLPYELSTDDIYLTAG 125 (430)
T ss_pred CCCeeeCCCCCC-CCCCCCCCCHHHHHHHHHHHHcCcCCCCCC----CccCHHHHHHHHHHHhhccCCCCChhhEEEeCC
Confidence 788999876632 1122 1467899999988865321 1221 2223444455554441 235679999999
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChh
Q 013204 104 GSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEE 183 (447)
Q Consensus 104 GseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (447)
+++|+..+++... .++++|++.+|+|..+............ .+++... .
T Consensus 126 ~~~al~l~~~~l~--------~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~-------------~~~~~~~-------~--- 174 (430)
T PLN00145 126 CAQAIEIIMSVLA--------QPGANILLPRPGYPLYEARAVFSGLEVR-------------HFDLLPE-------R--- 174 (430)
T ss_pred HHHHHHHHHHHhc--------CCCCEEEEcCCCCccHHHHHHHcCCEEE-------------EeeCCcc-------c---
Confidence 9999999998763 2347899999999886544433222111 1111000 0
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccc-cccC
Q 013204 184 EYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFG-CDKY 262 (447)
Q Consensus 184 ~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~-~~~~ 262 (447)
.+ ..+++++++++. +++.+++++.|.|++| .+.+.+.+++|.++|++||+++|+||+|..+...+..+. ...+
T Consensus 175 ~~-~~d~~~l~~~~~---~~~~~i~i~~P~NPtG--~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~ 248 (430)
T PLN00145 175 GW-EVDLEGVEALAD---ENTVAMVIINPNNPCG--SVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVF 248 (430)
T ss_pred CC-cCCHHHHHHHhC---cCceEEEEeCCCCCCC--CCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhh
Confidence 00 011366766554 3456778888866665 566889999999999999999999999987754332221 1111
Q ss_pred CCCCCee---eecccCCCcccceeEEEe--ChhHHH------HhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh-
Q 013204 263 SIKPDLV---SFAKALSSAYMPIGAILV--SPEVSE------VIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE- 330 (447)
Q Consensus 263 ~~~~d~v---~~sK~l~gg~~~~g~~~~--~~~~~~------~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~- 330 (447)
+-...++ +|||.++..++|+|++++ ++.+++ .+.. +.. .....+.+.+.++..+|+.-.+
T Consensus 249 ~~~~~vi~~~S~SK~~~~pG~RlG~iv~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~Q~a~~~~l~~~~~~ 320 (430)
T PLN00145 249 GEVAPVLTLGSISKRWVVPGWRLGWIATCDPNGILKETKVVDSIRN-------YLN-ISTDPATFVQGAIPQIIANTKEE 320 (430)
T ss_pred cccCcEEEEeccccccCCCCeeEEEEEEecchhhhhhhHHHHHHHH-------Hhc-ccCCCCHHHHHHHHHHHhcCHHH
Confidence 1112233 589986665599999997 333332 2221 111 1223456677777666652111
Q ss_pred --hcHHHHHHHHHHHHHHhHhhccCCCceee-Eeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHH-HHHcCceEEee
Q 013204 331 --RNIVEQVNKIAPKFQDGVKAFSDSPIIGE-IRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQ-CEKHGMLVRVS 405 (447)
Q Consensus 331 --~~~~~~~~~~~~~l~~~L~~l~~~~~~~~-~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~Gi~~~~~ 405 (447)
++..+.++++.+.+.+.|+++ +.+.. ..+. |.++.+.+....... .. ....+..+ +.++||++.|+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~L~~~---~g~~~~~~P~ga~y~~v~l~~~~~~~--~~----~~~~~~~~ll~~~gV~v~pG 391 (430)
T PLN00145 321 FFTKTLGLLKETADICYEKIKEI---KCITCPHKPEGSMFVMVKLDLSCLSG--IK----DDMDFCCKLAKEESVVVLPG 391 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC---CCCCCCcCCCeeeEEEeccChhhcCC--CC----CHHHHHHHHHHhCCEEEeCc
Confidence 123344444555555555443 32222 2344 445555554211000 00 12335544 45679999876
Q ss_pred C-----CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 406 G-----DNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 406 g-----~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
. +.+|++ +..+++++++++++|.+.+.+.++
T Consensus 392 ~~fg~~~~lRis--~~~~~~~l~~al~rl~~~~~~~~~ 427 (430)
T PLN00145 392 SALGMKNWLRIT--FAIDPPSLEDGLERLKSFCLRHAK 427 (430)
T ss_pred cccCCCCeEEEE--eCCCHHHHHHHHHHHHHHHHHhcc
Confidence 2 679999 567899999999999999977654
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.9e-20 Score=177.45 Aligned_cols=332 Identities=14% Similarity=0.142 Sum_probs=199.6
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc-------CCCCeEEEeCChh
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA-------SKMAKVFFTNSGS 105 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-------~~~~~v~~~~sGs 105 (447)
+.++|+.+|. ++++ .+|.+.+++.+.+....... ..+.....+|.+.+++++.. ...++|++++|++
T Consensus 28 ~~~~~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~---~Y~~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~ 101 (374)
T PRK02610 28 IQLDRLDTNE--FPYD-LPPDLKQKLAWLYQQGIESN---RYPDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSD 101 (374)
T ss_pred cceeEecCCC--CCCC-CCHHHHHHHHHHHhhccccc---CCCCCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChH
Confidence 4588887774 4555 57899999988766521100 11222345566666666531 4667899999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHH
Q 013204 106 EANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEY 185 (447)
Q Consensus 106 eA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (447)
+++..++.... .++++.|++.+|+|.++.......+.... .++.... .+
T Consensus 102 ~al~~~~~~~~-------~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~-------------~~~~~~~-----------~~ 150 (374)
T PRK02610 102 ELIRSLLIATC-------LGGEGSILVAEPTFSMYGILAQTLGIPVV-------------RVGRDPE-----------TF 150 (374)
T ss_pred HHHHHHHHHHc-------CCCCCeEEEcCCChHHHHHHHHHcCCEEE-------------EecCCcc-----------cC
Confidence 99987776432 13334799999999887654443322111 1111000 00
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCC
Q 013204 186 STRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIK 265 (447)
Q Consensus 186 ~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~ 265 (447)
. .++++|++.+......++++|++.+.++.+| ...+.+.++.+.++| +++++|.||+|..|.... . .....-.
T Consensus 151 ~-~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG-~~~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~~-~--~~~~~~~ 223 (374)
T PRK02610 151 E-IDLAAAQSAIEQTQNPPVRVVFVVHPNSPTG-NPLTAAELEWLRSLP--EDILVVIDEAYFEFSQTT-L--VGELAQH 223 (374)
T ss_pred C-CCHHHHHHHHHhhcCCCceEEEEeCCCCCCC-CCCCHHHHHHHHhcc--CCcEEEEeccccccCccc-h--HHHHhcC
Confidence 0 1136777766532112455554444455555 445777888888887 499999999998773211 1 1111112
Q ss_pred CCee---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHH---
Q 013204 266 PDLV---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNK--- 339 (447)
Q Consensus 266 ~d~v---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~--- 339 (447)
+.++ +|||.++.+++|+|++++++++++.+... . ..+..+.+++.++.++++.. +.+.+.+++
T Consensus 224 ~~~ivi~SfSK~~g~~GlRiG~~v~~~~l~~~l~~~-------~--~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~ 292 (374)
T PRK02610 224 PNWVILRTFSKAFRLAAHRVGYAIGHPELIAVLEKV-------R--LPYNLPSFSQLAAQLALEHR--QELLAAIPEILQ 292 (374)
T ss_pred CCEEEEEecchhccCcccceeeeecCHHHHHHHHHh-------c--CCCCCCHHHHHHHHHHhcCH--HHHHHHHHHHHH
Confidence 3333 68999975559999999999999888642 1 13445667777777776532 222222222
Q ss_pred HHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeCCEEEEecCCCCCH
Q 013204 340 IAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSP 419 (447)
Q Consensus 340 ~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g~~iR~~~~~~~t~ 419 (447)
..+.+.+.|+.+ +.+...+..|.++.+.+.... ....+.+.|.++||.+.+..+.+|++ +. ++
T Consensus 293 ~r~~l~~~L~~~---~~~~~~p~~g~f~~~~l~~~~-----------~~~~~~~~l~~~gi~v~~~~~~lRls--~~-~~ 355 (374)
T PRK02610 293 ERDRLYQALQEL---PQLRVWPSAANFLYLRLSQDA-----------ALAALHQALKAQGTLVRHTGGGLRIT--IG-TP 355 (374)
T ss_pred HHHHHHHHHHhC---CCcEeCCCcceEEEEeCCCCC-----------CHHHHHHHHHHCCEEEEeCCCeEEEe--CC-CH
Confidence 233444444443 222223445667677665321 13457888999999998877789999 33 46
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013204 420 EEVDELISKYGKALKAT 436 (447)
Q Consensus 420 e~i~~~~~~l~~~l~~~ 436 (447)
+++++++++|++++.++
T Consensus 356 ~~~~~~l~~l~~~l~~~ 372 (374)
T PRK02610 356 EENQRTLERLQAALTQL 372 (374)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 78899999999888654
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.4e-20 Score=177.87 Aligned_cols=325 Identities=16% Similarity=0.132 Sum_probs=194.7
Q ss_pred CCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcc
Q 013204 49 GSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKK 128 (447)
Q Consensus 49 ~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~ 128 (447)
+.+|.+++++.+++......+..+........++++++++++. .+...+++++||++|+..+++.++.. ...+++
T Consensus 31 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g-~~~~~~~~~~ggt~a~~~a~~~~~~~----~~~~~~ 105 (371)
T PRK13520 31 EPHPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLH-LPDAYGYITSGGTEANIQAVRAARNL----AKAEKP 105 (371)
T ss_pred CchHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhC-CCCCCeEEecCcHHHHHHHHHHHHhh----ccCCCc
Confidence 5789999999998875322222222233344678888888874 34446889999999999999987533 111245
Q ss_pred eEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEE
Q 013204 129 KFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAF 208 (447)
Q Consensus 129 ~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~v 208 (447)
+|++.++.+..+.. .....|.. +..++.+..+ ..++++|++.+.. ++..++
T Consensus 106 ~vl~~~~~h~s~~~-~~~~~g~~------------~~~v~~~~~~-------------~~d~~~l~~~i~~---~~~~vi 156 (371)
T PRK13520 106 NIVVPESAHFSFDK-AADMLGVE------------LRRAPLDDDY-------------RVDVKAVEDLIDD---NTIGIV 156 (371)
T ss_pred eEEecCcchHHHHH-HHHHcCce------------EEEecCCCCC-------------cCCHHHHHHHHhh---CCEEEE
Confidence 77776665433322 22111211 1112221100 0124778877752 333344
Q ss_pred EEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc----cccccccccCCCCCCeeeec--ccCCCcccce
Q 013204 209 IAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR----LGTMFGCDKYSIKPDLVSFA--KALSSAYMPI 282 (447)
Q Consensus 209 i~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~----~g~~~~~~~~~~~~d~v~~s--K~l~gg~~~~ 282 (447)
++.+ ++++|.+.| +++|.++|++||+++++||+|+++.. .+..+.... ...|.++++ |...+| .|+
T Consensus 157 ~~~~-~~~tG~~~~----l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~--~~vd~~~~s~~K~~~a~-~~~ 228 (371)
T PRK13520 157 GIAG-TTELGQVDP----IPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSL--PGVDSITIDPHKMGLAP-IPA 228 (371)
T ss_pred EEcC-CcCCcccCC----HHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccC--CCCceEEECCccccCcc-CCc
Confidence 4444 456677776 99999999999999999999986521 110111111 235666553 533334 688
Q ss_pred eEEEe-ChhHHHHhhhccCCC-C--ccCcCCCCCCcHHHHHHHHHHHHHHhhhc---HHHHHHHHHHHHHHhHhhccCCC
Q 013204 283 GAILV-SPEVSEVIHSQSNTL-G--SFSHGFTYSGHPVSCAVAIEALKIYKERN---IVEQVNKIAPKFQDGVKAFSDSP 355 (447)
Q Consensus 283 g~~~~-~~~~~~~~~~~~~~~-~--~~~~~~t~~~~~~~~~aa~a~l~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~ 355 (447)
|+++. ++++++.+....... . .+...+| .++..++++.++++.+..++ ..++..++.+++++.|+++ +..
T Consensus 229 G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt--~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~ 305 (371)
T PRK13520 229 GGILFRDESYLDALAVDTPYLTSKKQATLTGT--RSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKER-GFE 305 (371)
T ss_pred eEEEEcCHHHHHhhcccCccccCCCCcceEee--ccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhC-CCE
Confidence 87776 555776654211000 0 0000112 23345666777787654433 5677777888888888775 322
Q ss_pred ceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC--CEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 356 IIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--DNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 356 ~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g--~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
+ .......++.+.+.. ...+.++|.++||.+..++ +.+|++++..+|++||+++++.|++++
T Consensus 306 ~--~~~~~~~~v~~~~~~--------------~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~ 369 (371)
T PRK13520 306 P--VIEPVLNIVAFDDPN--------------PDEVREKLRERGWRVSVTRCPEALRIVCMPHVTREHIENFLEDLKEVK 369 (371)
T ss_pred E--ecCCCceEEEEecCC--------------HHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHHHHh
Confidence 1 112233455554431 3468888999999998764 569999888899999999999999876
Q ss_pred H
Q 013204 434 K 434 (447)
Q Consensus 434 ~ 434 (447)
+
T Consensus 370 ~ 370 (371)
T PRK13520 370 K 370 (371)
T ss_pred h
Confidence 4
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.2e-20 Score=184.61 Aligned_cols=349 Identities=13% Similarity=0.118 Sum_probs=205.9
Q ss_pred CCCCEEEecCCccccccCCC-CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhH
Q 013204 30 VNGKKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEA 107 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA 107 (447)
..|+.+++|..|.- +++|. .++++.+++.+.+..... |+...+..+....+++.+..... ...+++|++++|++++
T Consensus 143 ~~g~~~i~l~~G~p-~~~~~~~p~~~~~~~~~~~~~~~~-Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~ea 220 (517)
T PRK13355 143 AAGTHILKLNIGNP-APFGFRTPDEVVYDMAQQLTDTEG-YSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSEL 220 (517)
T ss_pred HcCCCeEEecCcCC-CcCCCCCCHHHHHHHHHHhhcCCC-CCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHH
Confidence 35788999987643 44564 477899999888764322 22222233333444444332221 2467899999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 108 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 108 ~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
+..+++... ..++.|++.+|.|..+...+...++.... +++..... | .
T Consensus 221 l~~~~~~l~--------~~Gd~Vli~~P~y~~y~~~~~~~g~~~v~-------------~~~~~~~~----------~-~ 268 (517)
T PRK13355 221 INLSMSALL--------DDGDEVLIPSPDYPLWTACVNLAGGTAVH-------------YRCDEQSE----------W-Y 268 (517)
T ss_pred HHHHHHHhC--------CCCCEEEEcCCCCcCHHHHHHHCCCEEEE-------------eecCcccC----------C-C
Confidence 999988663 33578999999998887555444332211 11100000 0 0
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCC
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPD 267 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d 267 (447)
.+++++++.+. +++.+++++.|.|++| ...+.+.+++|.++|++||+++|+||+|..|...+..+. ......++
T Consensus 269 ~d~~~l~~~~~---~~~k~i~i~nP~NPTG--~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~-s~~~~~~~ 342 (517)
T PRK13355 269 PDIDDIRSKIT---SRTKAIVIINPNNPTG--ALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHT-SIASLAPD 342 (517)
T ss_pred CCHHHHHHhcC---cCceEEEEECCCCCCC--cCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcc-cHHHhCCC
Confidence 01366666553 3445567777766665 455789999999999999999999999997754443211 00111234
Q ss_pred e--e---eecccCCCcccceeEEEe--ChhH----HHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh-hcHH-
Q 013204 268 L--V---SFAKALSSAYMPIGAILV--SPEV----SEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE-RNIV- 334 (447)
Q Consensus 268 ~--v---~~sK~l~gg~~~~g~~~~--~~~~----~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-~~~~- 334 (447)
. + +|||.++..++++|+++. ++++ ++.+.. .....++.+.+++.++.++|+.... ++..
T Consensus 343 ~~vi~~~S~SK~~~~~G~RiG~~i~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~ 414 (517)
T PRK13355 343 LFCVTFSGLSKSHMIAGYRIGWMILSGNKRIAKDYIEGLNM--------LANMRLCSNVPAQSIVQTALGGHQSVKDYLV 414 (517)
T ss_pred CeEEEEecchhhccCcccceEEEEeeCchhhHHHHHHHHHH--------HhcCcCCcChHHHHHHHHHhcCCccHHHHHH
Confidence 2 2 479987654499999984 3443 333321 0111234566777777777742100 1111
Q ss_pred --HHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEE-EEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-----
Q 013204 335 --EQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILG-TEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG----- 406 (447)
Q Consensus 335 --~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g----- 406 (447)
.+..++.+++.+.|+++ +.+....+.|.++. +.+...... ... ....+.+.|.++||.+.++.
T Consensus 415 ~~~~~~~~r~~l~~~L~~~---~g~~~~~p~g~fy~~~~l~~~~~~---~~~---~~~~~~~ll~~~gV~v~pg~~F~~~ 485 (517)
T PRK13355 415 PGGRVYEQRELVYNALNAI---PGISAVKPKAAFYIFPKIDVKKFN---IHD---DEQFALDLLHDKKVLIVQGTGFNWD 485 (517)
T ss_pred HHHHHHHHHHHHHHHHhcC---CCcccCCCCeeeEEEeecCcccCC---CCC---HHHHHHHHHHhCCEEEeCcchhCCC
Confidence 12233345555555544 33334455666543 355421100 000 12234466778999998751
Q ss_pred --CEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 407 --DNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 407 --~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
+.+|++ +..++++|++++++|.+.++..+
T Consensus 486 ~~~~~Ris--~~~~~~~l~~a~~rl~~~~~~~~ 516 (517)
T PRK13355 486 KPDHFRVV--YLPRLEDLEDAMDRLADFFSYYR 516 (517)
T ss_pred CcCEEEEE--eCCCHHHHHHHHHHHHHHHHHhh
Confidence 569999 67899999999999999987643
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-19 Score=177.54 Aligned_cols=337 Identities=12% Similarity=0.064 Sum_probs=203.4
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc-CCCC-eEEEeCChhhHHH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA-SKMA-KVFFTNSGSEAND 109 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~-~v~~~~sGseA~~ 109 (447)
++.++||..|.. .++ .+|.+.+++.+.++.....+....+..+....+++.+.+.+.. .+.+ ++++++|+++|+.
T Consensus 29 ~~~~i~l~~g~~--~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~ 105 (386)
T PRK09082 29 EHGAINLSQGFP--DFD-GPPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALF 105 (386)
T ss_pred hCCEEEecCCCC--CCC-CCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHH
Confidence 456789877642 333 4788999998887653222222234455566777777666532 2333 7999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (447)
.++.... .+++.|++.+++|.+........ |... ..++... +.+ ..+
T Consensus 106 ~~~~~~~--------~~gd~Vli~~p~y~~~~~~~~~~-g~~~------------~~~~~~~-----------~~~-~~d 152 (386)
T PRK09082 106 AAILALV--------RPGDEVIVFDPSYDSYAPAIELA-GGRA------------VRVALQP-----------PDF-RVD 152 (386)
T ss_pred HHHHHHc--------CCCCEEEEeCCCchhhHHHHHHc-CCEE------------EEEecCc-----------ccc-cCC
Confidence 9998663 33578999999887764433332 2111 1111100 000 011
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc--ccccCCCCCC
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF--GCDKYSIKPD 267 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~--~~~~~~~~~d 267 (447)
++++++.+. + ++.+|++...++..| ..++.+.+++|.++|++||+++|+||+|..+...+..+ .....+....
T Consensus 153 ~~~l~~~~~---~-~~~~v~l~~p~NPtG-~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~ 227 (386)
T PRK09082 153 WQRFAAAIS---P-RTRLIILNTPHNPSG-TVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRER 227 (386)
T ss_pred HHHHHHhcC---c-cceEEEEeCCCCCCC-cCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCc
Confidence 356666654 2 344444444444445 34577899999999999999999999998764433221 1122222223
Q ss_pred ee---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHHHHHH
Q 013204 268 LV---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQVNKIAP 342 (447)
Q Consensus 268 ~v---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~~~~~ 342 (447)
++ +|||.++.+++|+|++++++++++.+... .....++.+.+++.++.+.++... -+++...++++.+
T Consensus 228 ~i~~~S~SK~~~~~G~RiG~iv~~~~l~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 300 (386)
T PRK09082 228 AFVVSSFGKTYHVTGWKVGYCVAPAALSAEFRKV-------HQYNTFTVNTPAQLALADYLRAEPEHYLELPAFYQAKRD 300 (386)
T ss_pred EEEEeechhhccchhhhhhhhhCCHHHHHHHHHH-------HhhhcCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 33 68999975449999999999998887642 122345566667666555554111 1223445566666
Q ss_pred HHHHhHhhccCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHH-HHcCceEEeeC---------CEEEE
Q 013204 343 KFQDGVKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQC-EKHGMLVRVSG---------DNIMM 411 (447)
Q Consensus 343 ~l~~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~g---------~~iR~ 411 (447)
.+.+.|++. .+ ...... |.++.+.+++.... ....+.+.| .++||.+.++. +.+|+
T Consensus 301 ~~~~~L~~~---~~-~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri 367 (386)
T PRK09082 301 RFRAALANS---RF-KLLPCEGTYFQLVDYSAISDL---------DDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRL 367 (386)
T ss_pred HHHHHHHhC---CC-cccCCCeeEEEEEeccccCCC---------CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEE
Confidence 676766653 21 122233 44556676531110 134577765 57799988752 46999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q 013204 412 SPPFIMSPEEVDELISKYGK 431 (447)
Q Consensus 412 ~~~~~~t~e~i~~~~~~l~~ 431 (447)
+ +..+++++++++++|++
T Consensus 368 ~--~~~~~~~l~~~~~rl~~ 385 (386)
T PRK09082 368 C--FAKQEETLDAAAERLCQ 385 (386)
T ss_pred E--ecCCHHHHHHHHHHHhh
Confidence 9 56689999999998864
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.8e-20 Score=178.12 Aligned_cols=317 Identities=16% Similarity=0.235 Sum_probs=195.5
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDT 110 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~ 110 (447)
.+.+++||+.+. ++++ .+|.+.+++.+.+.....+ +.....+|.+.+++.+ ...++++++++|+++++..
T Consensus 28 ~~~~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~Y------~~~~~~~lr~~ia~~~-~~~~~~I~it~G~~~al~~ 97 (357)
T PRK14809 28 DPDDLVKLSSNE--NPHG-PSPAAVEAIREAAERVHSY------PKASHADLTAALADRW-DVSPEQVWLANGGDGALDY 97 (357)
T ss_pred CccceeEecCCC--CCCC-CCHHHHHHHHHHHhhhhcC------CCCCHHHHHHHHHHHh-CCCcceEEECCCHHHHHHH
Confidence 467899998764 5566 5788999988877542211 2223557888888876 4577899999999999999
Q ss_pred HHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHH
Q 013204 111 QVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190 (447)
Q Consensus 111 Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (447)
+++... ..++.|++.+|+|..+.......+... ..++++.. +.+. .+.
T Consensus 98 ~~~~~~--------~~gd~V~v~~P~y~~~~~~~~~~g~~~-------------~~~~l~~~----------~~~~-~~~ 145 (357)
T PRK14809 98 LARAML--------DPGDTVLVPDPGFAYYGMSARYHHGEV-------------REYPVSKA----------DDFE-QTA 145 (357)
T ss_pred HHHHhc--------CCCCEEEEeCCChHHHHHHHHHcCCeE-------------EEEecccC----------cCCC-cCH
Confidence 988653 334789999999865543322211111 11111100 0000 001
Q ss_pred HHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCC---
Q 013204 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPD--- 267 (447)
Q Consensus 191 ~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d--- 267 (447)
+++++.. ++...+++++|.|++ | ...+.+.+++|+++|++ ++++|.||+|..|...+... ........
T Consensus 146 ~~~~~~~----~~~k~i~l~~p~NPT-G-~~~s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~~~~--~~~~~~~~vi~ 216 (357)
T PRK14809 146 DTVLDAY----DGERIVYLTSPHNPT-G-SEIPLDEVEALAERTDE-ETLVVVDEAYGEFAERPSAV--ALVEERDDVAV 216 (357)
T ss_pred HHHHHhh----cCCcEEEEeCCCCCC-C-cCCCHHHHHHHHHhCcc-CcEEEEechhhhccCCchhH--HHHhhCCCEEE
Confidence 3333322 122345555555554 4 44567778888888875 78999999999875432211 11111122
Q ss_pred eeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHH----HHHHHHHHH
Q 013204 268 LVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIV----EQVNKIAPK 343 (447)
Q Consensus 268 ~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~----~~~~~~~~~ 343 (447)
+-+|||.++..++++|++++++++++.+... ..++..+.+++.++.++++ .+++. +.++++.+.
T Consensus 217 ~~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~ 284 (357)
T PRK14809 217 LRTFSKAYGLAGLRLGYAVVPEEWADAYARV---------NTPFAASELACRAGLAALD---DDEHVERTVETARWAREY 284 (357)
T ss_pred EecchhHhcCcchhheeeecCHHHHHHHHHh---------CCCCCCCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHH
Confidence 2368999974348999999999998888631 1255667788777777764 22333 333333333
Q ss_pred HHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-----CEEEEecCCCCC
Q 013204 344 FQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-----DNIMMSPPFIMS 418 (447)
Q Consensus 344 l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-----~~iR~~~~~~~t 418 (447)
+.+.|+. .. .+..|.++.+.+.+ ...+.+.|.++||.+.++. +.+|++ + .+
T Consensus 285 l~~~L~~---~~----~~~~g~f~~~~~~~--------------~~~~~~~l~~~gv~v~~g~~f~~~~~iRls--~-~~ 340 (357)
T PRK14809 285 IREELDA---PT----WESAGNFVLAEVGD--------------ASAVAEAAQERGVIVRDCTSFGLPECIRIT--C-GT 340 (357)
T ss_pred HHHHhcC---cc----CCCCCCEEEEECCC--------------HHHHHHHHHHCCEEEEECccCCCCCeEEEe--c-CC
Confidence 4444432 11 13456677666531 2357788899999999763 569999 3 36
Q ss_pred HHHHHHHHHHHHHHHH
Q 013204 419 PEEVDELISKYGKALK 434 (447)
Q Consensus 419 ~e~i~~~~~~l~~~l~ 434 (447)
++++++++++|+++++
T Consensus 341 ~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 341 REETERAVEVLNEVLA 356 (357)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8999999999988764
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-19 Score=179.02 Aligned_cols=352 Identities=14% Similarity=0.071 Sum_probs=206.1
Q ss_pred CCCEEEecCCccccccCC--CCCHHHHHHHHHHHhcCCc-ccccCcCCChHHHHHHHHHHHhcC-----cCCCCeEEEeC
Q 013204 31 NGKKYLDSLAGLWCTALG--GSEPRLVAAATAQLNTLPF-YHSFWNRTTKPSLDLAKELLEMFT-----ASKMAKVFFTN 102 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG--~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~~v~~~~ 102 (447)
+++.++++..+.. ..+. -.++++.+++.+.+..... .+. +.....++.+.+++++. ...+++|++++
T Consensus 64 ~~~~vi~l~~Gdp-~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~----~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~ 138 (462)
T PLN02187 64 VNKTILPLGHGDP-SVYPCFRTCIEAEDAVVDVLRSGKGNSYG----PGAGILPARRAVADYMNRDLPHKLTPEDIFLTA 138 (462)
T ss_pred CCCCeEECCCCCC-CCCCCCCCCHHHHHHHHHHHhCCCCCCCC----CCCChHHHHHHHHHHHHHhcCCCCCcccEEEeC
Confidence 3566777655411 1111 1345788888888765321 111 22233444455554431 24678999999
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCCh
Q 013204 103 SGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETE 182 (447)
Q Consensus 103 sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (447)
|+++|+..+++... ..++.|++.+|+|.++...+...+. .. ..++.... .
T Consensus 139 G~~~al~~~~~~l~--------~pGd~Vlv~~P~y~~y~~~~~~~g~-~~------------~~~~l~~~-------~-- 188 (462)
T PLN02187 139 GCNQGIEIVFESLA--------RPNANILLPRPGFPHYDARAAYSGL-EV------------RKFDLLPE-------K-- 188 (462)
T ss_pred CHHHHHHHHHHHhc--------CCCCEEEEeCCCCccHHHHHHHcCC-EE------------EEEeCccc-------c--
Confidence 99999999999763 3357899999999887544333221 11 11111000 0
Q ss_pred hHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-cccc
Q 013204 183 EEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-GCDK 261 (447)
Q Consensus 183 ~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~~~~ 261 (447)
.+ ..+++++++.+. +.+.+++++.|.|++| .+.+.+.+++|.++|++||+++|.||+|..+...+..+ ....
T Consensus 189 -~~-~~d~~~l~~~~~---~~~~~v~i~nP~NPTG--~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~ 261 (462)
T PLN02187 189 -EW-EIDLEGIEAIAD---ENTVAMVVINPNNPCG--NVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGK 261 (462)
T ss_pred -CC-ccCHHHHHHhcC---CCcEEEEEeCCCCCCC--CccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHH
Confidence 00 011366666553 3456788888877766 56688999999999999999999999999864444322 1111
Q ss_pred C-CCCCCee--eecccCCCcccceeEEEeC-hh-H---HHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh---h
Q 013204 262 Y-SIKPDLV--SFAKALSSAYMPIGAILVS-PE-V---SEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK---E 330 (447)
Q Consensus 262 ~-~~~~d~v--~~sK~l~gg~~~~g~~~~~-~~-~---~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~---~ 330 (447)
+ +..+-++ +|||.++.+++|+|++++. ++ + ++.+.... ... ..+.+.+.+++.++.++|+.-. -
T Consensus 262 ~~~~~~vi~l~SfSK~f~~pGlRiG~~v~~~p~~~~~~~~~~~~~~----~~~-~~~~~~s~~~Q~a~~~~L~~~~~~~l 336 (462)
T PLN02187 262 FASIVPVLTLAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIK----QNL-DVTPDPATIIQAALPAILEKADKNFF 336 (462)
T ss_pred hccCCcEEEEecchhhcCCccceeEEEEecCchhHHHHHHHHHHHH----Hhc-cccCCCCHHHHHHHHHHHhcCcHHHH
Confidence 1 1112222 5899977666999999983 32 2 23332110 101 1122346777777777775211 1
Q ss_pred hcHHHHHHHHHHHHHHhHhhccCCCcee-eEee-eeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC--
Q 013204 331 RNIVEQVNKIAPKFQDGVKAFSDSPIIG-EIRG-TGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-- 406 (447)
Q Consensus 331 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~-~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-- 406 (447)
++..+.++++.+.+.+.|+++ +... ...+ .|.++.+.+....... +. .....+.+.+.++||.+.++.
T Consensus 337 ~~~~~~l~~~r~~l~~~L~~~---~~~~~~~~P~gg~fl~~~l~~~~~~~--~~---~~~~~~~~ll~~~gV~v~pG~~f 408 (462)
T PLN02187 337 AKKNKILKHNVDLVCDRLKDI---PCVVCPKKPESCTYLLTKLELSLMDN--IK---DDIDFCVKLAREENLVFLPGDAL 408 (462)
T ss_pred HHHHHHHHHHHHHHHHHHhhC---CCCcCCCCCCEeEEEEeecChhhCCC--CC---CHHHHHHHHHhhCCEEEECcccc
Confidence 223445555666666666654 3221 1123 3566666654211000 00 012223455688999999763
Q ss_pred ---CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013204 407 ---DNIMMSPPFIMSPEEVDELISKYGKALKATEER 439 (447)
Q Consensus 407 ---~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 439 (447)
+.+|++ +..+++.+++++++|.++++...++
T Consensus 409 g~~~~iRis--~~~~~e~l~~al~rL~~~l~~~~~~ 442 (462)
T PLN02187 409 GLKNWMRIT--IGVEAHMLEDALERLKGFCTRHAKK 442 (462)
T ss_pred CCCCeEEEE--eCCCHHHHHHHHHHHHHHHHHhhhc
Confidence 579999 6678999999999999999876653
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-19 Score=176.55 Aligned_cols=341 Identities=16% Similarity=0.154 Sum_probs=200.5
Q ss_pred ccCCCCCHHHHHHHHHHHhcCCc----ccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHH
Q 013204 45 TALGGSEPRLVAAATAQLNTLPF----YHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120 (447)
Q Consensus 45 ~~lG~~~p~v~~a~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~ 120 (447)
.-+|.-++.+++|+.+....... .+.......+...++.+.+++++ +.+.++|++||++|+..+++.+.
T Consensus 27 ~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~---g~~~~~~~~g~t~a~~~al~~l~---- 99 (387)
T PRK09331 27 QRGGILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFL---GMDEARVTHGAREGKFAVMHSLC---- 99 (387)
T ss_pred hcCCCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHh---CCCcEEEeCCHHHHHHHHHHHhc----
Confidence 45778899999999998743221 11222234556788999999987 44578999999999999998763
Q ss_pred hcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhh
Q 013204 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE 200 (447)
Q Consensus 121 ~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~ 200 (447)
.++++|++..+++.+.. .++...|... ..++.+.... ...+++++++.+...
T Consensus 100 ----~~gd~Vlv~~~~h~s~~-~~~~~~G~~~------------~~v~~~~~~~-----------~~~d~~~l~~~l~~~ 151 (387)
T PRK09331 100 ----KKGDYVVLDGLAHYTSY-VAAERAGLNV------------REVPKTGYPE-----------YKITPEAYAEKIEEV 151 (387)
T ss_pred ----CCCCEEEECCCchHHHH-HHHHHcCCEE------------EEEeCccCcC-----------CCcCHHHHHHHHHHh
Confidence 23466776554443333 2232222211 1111100000 001247777777542
Q ss_pred ---CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee--eecccC
Q 013204 201 ---GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKAL 275 (447)
Q Consensus 201 ---~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l 275 (447)
..+++++|+++.++++.|.+.+ +++|.++|++||+++|+|++|+ +|..+ +....++ .|++ +++|++
T Consensus 152 ~~~~~~~~~lV~l~~~~~~tG~~~~----l~~I~~la~~~g~~livD~a~~-~g~~~--~~~~~~g--~D~~~~s~~K~l 222 (387)
T PRK09331 152 KEETGKPPALALLTHVDGNYGNLAD----AKKVAKVAHEYGIPFLLNGAYT-VGRMP--VDGKKLG--ADFIVGSGHKSM 222 (387)
T ss_pred hhccCCCCEEEEEECCCCCCccccc----HHHHHHHHHHcCCEEEEECCcc-cCCcC--CCHHHcC--CCEEEeeCcccc
Confidence 1135778888888888888777 9999999999999999999997 44332 1222233 4655 467999
Q ss_pred CCcccceeEEEeChhHHHHhhhccCCCC--ccC-cCCCCCCcHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHhHhhc
Q 013204 276 SSAYMPIGAILVSPEVSEVIHSQSNTLG--SFS-HGFTYSGHPVSCAVAIEALKIYKE-RNIVEQVNKIAPKFQDGVKAF 351 (447)
Q Consensus 276 ~gg~~~~g~~~~~~~~~~~~~~~~~~~~--~~~-~~~t~~~~~~~~~aa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l 351 (447)
+++ .++|++++++++++.+........ ... .+++. .+....+++++++.+.+ .+..++..++.+++++.|+++
T Consensus 223 ~~~-~~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~l 299 (387)
T PRK09331 223 AAS-APSGVLATTEEYADKVFRTSRKFGVKEVELLGCTL--RGAPLVTLMASFPHVVERVKRWDEEVKKARWFVDELEKI 299 (387)
T ss_pred cCC-CCEEEEEECHHHHhhcccccCCCcccceeeeceec--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 876 589999999998887653211000 000 11121 22233444555554332 233455566777888888877
Q ss_pred cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CE-EEEecCCCCCHHHHHHHHHHH
Q 013204 352 SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DN-IMMSPPFIMSPEEVDELISKY 429 (447)
Q Consensus 352 ~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~-iR~~~~~~~t~e~i~~~~~~l 429 (447)
++..+...-.....++.++........ ......+..+.+.|.++||...+.+ +. +|+. +..++++++++++++|
T Consensus 300 ~g~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~L~~~gI~~~~~~~~~i~ri~-~~g~t~~di~~l~~aL 375 (387)
T PRK09331 300 EGFKQLGEKPRNHDLMKFETPSFDEIA---KKHKRRGFFLYEELKKRGIHGIKPGATKEFKLS-TYGLTWEQVEYVADAF 375 (387)
T ss_pred CCEEEeccCcCcCCeEEEeCCchhHHh---hhccccchhHHHHHHHcCceEEccCCceEEEEE-eccCCHHHHHHHHHHH
Confidence 433322111122333333322100000 0000013458889999999854443 34 5555 4568999999999999
Q ss_pred HHHHHHH
Q 013204 430 GKALKAT 436 (447)
Q Consensus 430 ~~~l~~~ 436 (447)
+++++++
T Consensus 376 ~~i~~~~ 382 (387)
T PRK09331 376 KEIAEKY 382 (387)
T ss_pred HHHHHhc
Confidence 9887653
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.7e-20 Score=176.85 Aligned_cols=318 Identities=14% Similarity=0.083 Sum_probs=198.9
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHH
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQV 112 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al 112 (447)
+.++++..+. ++++ .+|.+.+++.+.+.....| +.....+|.+.+++.+ ..++++|++++|+++++..++
T Consensus 43 ~~~i~l~~~~--~~~~-~~~~~~~a~~~~~~~~~~Y------~~~~~~~Lr~aia~~~-~v~~e~I~it~Gs~~ai~~~~ 112 (370)
T PRK09105 43 EGAVFLNANE--CPLG-PSPAARDAAARSAALSGRY------DLELEDDLRTLFAAQE-GLPADHVMAYAGSSEPLNYAV 112 (370)
T ss_pred CCcEEecCCC--CCCC-CCHHHHHHHHHHHHHhcCC------CCchHHHHHHHHHHHh-CcChhhEEEcCChHHHHHHHH
Confidence 4567776553 4555 5889999998877543222 2223678888888876 357789999999999999999
Q ss_pred HHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHH
Q 013204 113 KLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 192 (447)
Q Consensus 113 ~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (447)
.... ..+++|++.+|+|..+...+...+.. . ..++....+. .++++
T Consensus 113 ~~l~--------~~gd~Vli~~P~y~~~~~~~~~~g~~-~------------~~v~~~~~~~-------------~d~~~ 158 (370)
T PRK09105 113 LAFT--------SPTAGLVTADPTYEAGWRAADAQGAP-V------------AKVPLRADGA-------------HDVKA 158 (370)
T ss_pred HHHc--------CCCCEEEEeCCChHHHHHHHHHcCCe-E------------EEecCCCCCC-------------CCHHH
Confidence 8663 23478999999998876544432221 1 1111110000 01244
Q ss_pred HHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee---
Q 013204 193 LEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--- 269 (447)
Q Consensus 193 le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--- 269 (447)
+++. .+++..+++++|.|++| ...+.+.++++.+.|+ +++++|+||+|..|+.. .......+..++++
T Consensus 159 l~~~----~~~~~~v~l~nP~NPTG--~~~~~~~l~~l~~~~~-~~~~lIvDEaY~~f~~~--~s~~~~~~~~~~vi~~~ 229 (370)
T PRK09105 159 MLAA----DPNAGLIYICNPNNPTG--TVTPRADIEWLLANKP-AGSVLLVDEAYIHFSDA--PSVVDLVAQRKDLIVLR 229 (370)
T ss_pred HHhc----CCCCCEEEEeCCCCCCC--cCcCHHHHHHHHHhCC-CCcEEEEECchHHhccC--cchHHHHhhCCCEEEEe
Confidence 4432 12334456667766655 4567788888888764 59999999999866421 11112222234544
Q ss_pred eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHhH
Q 013204 270 SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVEQVNKIAPKFQDGV 348 (447)
Q Consensus 270 ~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~~~~~~~~~l~~~L 348 (447)
+|||.++..++|+|++++++++++.+.. . ..+..+..++.++.++++..+ -++..+.++++.+++.+.|
T Consensus 230 SfSK~~g~~GlRiG~~v~~~~~i~~l~~-------~---~~~~~~~~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L 299 (370)
T PRK09105 230 TFSKLYGMAGMRLGLAAARPDLLAKLAR-------F---GHNPLPVPAAAAGLASLRDPKLVPQRRAENAAVREDTIAWL 299 (370)
T ss_pred cccHhhcCCccceeeeecCHHHHHHHHh-------c---CCCCcCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899987544999999999999988863 1 123355666777777665211 1223345555666666666
Q ss_pred hhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEe-e---CCEEEEecCCCCCHHHHHH
Q 013204 349 KAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV-S---GDNIMMSPPFIMSPEEVDE 424 (447)
Q Consensus 349 ~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~-~---g~~iR~~~~~~~t~e~i~~ 424 (447)
+++ +.. ...+.|.++.+.+.. ....+.+.|+++||.+.. . .+.+|++ ..+++++++
T Consensus 300 ~~~-g~~---~~~~~~~f~~~~~~~-------------~~~~l~~~L~~~gI~v~~~~~~~~~~~Ris---~~~~~~~~~ 359 (370)
T PRK09105 300 KKK-GYK---CTPSQANCFMVDVKR-------------PAKAVADAMAKQGVFIGRSWPIWPNWVRVT---VGSEEEMAA 359 (370)
T ss_pred HHC-CCC---cCCCCCcEEEEeCCC-------------CHHHHHHHHHHCCcEEecCCCCCCCeEEEE---cCCHHHHHH
Confidence 654 222 223456665554431 134588899999999842 1 3579999 347888999
Q ss_pred HHHHHHHHH
Q 013204 425 LISKYGKAL 433 (447)
Q Consensus 425 ~~~~l~~~l 433 (447)
++++|++.+
T Consensus 360 l~~al~~~~ 368 (370)
T PRK09105 360 FRSAFAKVM 368 (370)
T ss_pred HHHHHHHHh
Confidence 999988764
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-19 Score=175.91 Aligned_cols=342 Identities=13% Similarity=0.123 Sum_probs=203.2
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhHHHH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEANDT 110 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA~~~ 110 (447)
|..++||..+.. .++ .+|.+.+++.+.+......+....+..+....+++.+...+. ...++++++++|+++|+..
T Consensus 29 ~~~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~ 105 (388)
T PRK07337 29 GRDIIHMGIGEP--DFT-APEPVVEAAARALRRGVTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLL 105 (388)
T ss_pred CCCEEEeCCcCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHH
Confidence 456788866642 233 468889998887754222222212233344444444443332 2366789999999999988
Q ss_pred HHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHH
Q 013204 111 QVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190 (447)
Q Consensus 111 Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (447)
++.... ..++.|++.+|+|.+............. .++...... + ..++
T Consensus 106 ~~~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~-------------~~~~~~~~~----------~-~~~~ 153 (388)
T PRK07337 106 ACLALV--------ERGDEVLMPDPSYPCNRHFVAAAEGRPV-------------LVPSGPAER----------F-QLTA 153 (388)
T ss_pred HHHHhc--------CCCCEEEEeCCCchhhHHHHHHcCCEEE-------------EeecCCccC----------C-cCCH
Confidence 887653 3357899999999877543333222111 111100000 0 0013
Q ss_pred HHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee-
Q 013204 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV- 269 (447)
Q Consensus 191 ~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v- 269 (447)
+++++.+. +++..++++.|.|++| ...+.+.+++|.++|++|++++|+||+|.++...+.... .....++++
T Consensus 154 ~~l~~~~~---~~~~~v~l~~p~NPtG--~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~--~~~~~~~vi~ 226 (388)
T PRK07337 154 ADVEAAWG---ERTRGVLLASPSNPTG--TSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVS--ALSLGDDVIT 226 (388)
T ss_pred HHHHhhcC---ccceEEEEECCCCCCC--cCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcC--hhhccCCEEE
Confidence 56666553 3445566667766655 556788999999999999999999999987754432111 112234544
Q ss_pred --eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHH--h-hhcHHHHHHHHHHHH
Q 013204 270 --SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIY--K-ERNIVEQVNKIAPKF 344 (447)
Q Consensus 270 --~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~--~-~~~~~~~~~~~~~~l 344 (447)
+|||.++.+++++|++++++++++.+... ......+.+.+++.++.++++.- . -.+..+.++++.+.+
T Consensus 227 ~~S~SK~~~~~G~RiG~~~~~~~l~~~l~~~-------~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~ 299 (388)
T PRK07337 227 INSFSKYFNMTGWRLGWLVVPEALVGTFEKL-------AQNLFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFI 299 (388)
T ss_pred EEechhhcCCchhheeeeecCHHHHHHHHHH-------HHHhccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHH
Confidence 57998875448999999999988877532 11123345666766666665410 0 122344555566666
Q ss_pred HHhHhhccCCCceee-EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHH-HHHcCceEEee--------CCEEEEecC
Q 013204 345 QDGVKAFSDSPIIGE-IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQ-CEKHGMLVRVS--------GDNIMMSPP 414 (447)
Q Consensus 345 ~~~L~~l~~~~~~~~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~Gi~~~~~--------g~~iR~~~~ 414 (447)
.+.|+++ +.... ....|.++.+++.....+.. .....+... +.++||.+.++ .+.+|++
T Consensus 300 ~~~L~~~---~~~~~~~p~~g~f~~~~~~~~~~~~~------~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~-- 368 (388)
T PRK07337 300 VPALESL---GFKVPVMPDGAFYVYADCRGVAHPAA------GDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLS-- 368 (388)
T ss_pred HHHHHhc---CCccccCCCeeEEEEEecccccCCCC------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEE--
Confidence 6666654 22111 22346677777753210000 013446666 45789999764 1469999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 013204 415 FIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 415 ~~~t~e~i~~~~~~l~~~l 433 (447)
+..+++++++++++|.+.+
T Consensus 369 ~~~~~~~l~~~l~rl~~~l 387 (388)
T PRK07337 369 YATSMSRLEEAVARLGKLF 387 (388)
T ss_pred ecCCHHHHHHHHHHHHHHh
Confidence 5568999999999998764
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-19 Score=176.55 Aligned_cols=337 Identities=12% Similarity=0.080 Sum_probs=195.6
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCC-cccccCcCCChHHHHHHHHHHHhcCc-CCCC-eEEEeCChhhH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP-FYHSFWNRTTKPSLDLAKELLEMFTA-SKMA-KVFFTNSGSEA 107 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~-~v~~~~sGseA 107 (447)
.|..++|+..+. ..++ .+|.+.+++.+.+.... ..++...+..+....+++.+.+.+.. .+.+ .+++++|++++
T Consensus 29 ~~~~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~ 105 (385)
T PRK09276 29 RGVDVISLGIGD--PDLP-TPDHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEG 105 (385)
T ss_pred cCCCEEEecCCC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHH
Confidence 456789988774 2343 46788999888875421 11221112233334444444433221 2444 58888999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 108 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 108 ~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
+..+++... ..++.|++.+|+|..........+.... .++..... .+.
T Consensus 106 i~~~~~~~~--------~~gd~Vl~~~P~y~~~~~~~~~~g~~~~-------------~v~~~~~~----------g~~- 153 (385)
T PRK09276 106 IAHIPLAFV--------NPGDVVLVPDPGYPVYKIGTIFAGGEPY-------------FMPLKEEN----------GFL- 153 (385)
T ss_pred HHHHHHHhC--------CCCCEEEEcCCCCcChHHHHHHcCCEEE-------------EEecCCCC----------CCc-
Confidence 999988763 3357899999999887554443222111 11110000 000
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-c-cccCCC-
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-G-CDKYSI- 264 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~-~~~~~~- 264 (447)
.+++++++.+. ++...++++.|.|++| ...+.+.+++|.++|++||+++|+||+|..+...+... . ....+.
T Consensus 154 ~d~~~l~~~~~---~~~~~v~l~~p~NPtG--~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~ 228 (385)
T PRK09276 154 PDLDAIPEDVA---KKAKLMFINYPNNPTG--AVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAK 228 (385)
T ss_pred CCHHHHHHhcc---ccceEEEEeCCCCCCC--CCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCc
Confidence 01255555443 2233344444655554 45688999999999999999999999998774333211 1 111111
Q ss_pred --CCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHHHH
Q 013204 265 --KPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQVNKI 340 (447)
Q Consensus 265 --~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~~~ 340 (447)
...+-+|||.++..++++|++++++++++.+.... .....+.+++.+.++.++++... -++..+.++++
T Consensus 229 ~~~i~~~S~SK~~g~~GlRiG~~i~~~~l~~~~~~~~-------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 301 (385)
T PRK09276 229 DVGIEFHSLSKTYNMTGWRIGFAVGNADLIAGLGKVK-------SNVDSGVFQAIQEAGIAALNGPQEVVEELRKIYQER 301 (385)
T ss_pred CCEEEEecchhhcCCcchhheeeeCCHHHHHHHHHHH-------hhccCCCCHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 12233789999754489999999999988886421 11122334555666666664211 12334555556
Q ss_pred HHHHHHhHhhccCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEee-------CCEEEE
Q 013204 341 APKFQDGVKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVS-------GDNIMM 411 (447)
Q Consensus 341 ~~~l~~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------g~~iR~ 411 (447)
.+.+.+.|+++ ... ...+. |.++.+.+.... ....+.++|+ ++||.+.++ .+.+|+
T Consensus 302 ~~~l~~~L~~~-~~~---~~~~~~~~~~~v~~~~~~-----------~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ri 366 (385)
T PRK09276 302 RDILVEGLRKL-GLE---VEPPKATFYVWAPVPKGY-----------TSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRI 366 (385)
T ss_pred HHHHHHHHHhC-CCc---ccCCCcceEEEEECCCCC-----------CHHHHHHHHHHhCCEEECCchhhCCCCCCeEEE
Confidence 66666666654 221 12233 444566664321 1345777776 579999875 146999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q 013204 412 SPPFIMSPEEVDELISKYGK 431 (447)
Q Consensus 412 ~~~~~~t~e~i~~~~~~l~~ 431 (447)
+ +..+++++.+++++|.+
T Consensus 367 s--~~~~~~~l~~~l~~l~~ 384 (385)
T PRK09276 367 A--LTVPDERIEEAVERIKK 384 (385)
T ss_pred E--eCCCHHHHHHHHHHHhh
Confidence 9 55688888888888753
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.6e-19 Score=173.52 Aligned_cols=339 Identities=15% Similarity=0.130 Sum_probs=199.6
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCC-eEEEeCChhhHHHH
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMA-KVFFTNSGSEANDT 110 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~-~v~~~~sGseA~~~ 110 (447)
..++|+..+... ++ .++.+.+++.+.+++....+....+..+...++++.+.+.+. ...++ ++++++|+++|+..
T Consensus 28 ~~~i~l~~~~p~--~~-~~~~~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~ 104 (387)
T PRK07683 28 DNLISLTIGQPD--FP-TPSHVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDI 104 (387)
T ss_pred CCeEEecCCCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHH
Confidence 467888777422 33 367889999998875322222112233344444444433321 13555 89999999999999
Q ss_pred HHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHH
Q 013204 111 QVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190 (447)
Q Consensus 111 Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (447)
+++... ..++.|++.++.|.++.......+.... .++.... +.. .+.
T Consensus 105 ~~~~l~--------~~gd~Vl~~~p~y~~~~~~~~~~g~~~~-------------~~~~~~~------~~~------~~~ 151 (387)
T PRK07683 105 AFRTIL--------EPGTEVILPAPIYPGYEPIIRLCGAKPV-------------FIDTRST------GFR------LTA 151 (387)
T ss_pred HHHHhC--------CCCCEEEEcCCCccchHHHHHHcCCEEE-------------EeecCcc------cCC------CCH
Confidence 988653 2347899999999887544433221111 1111000 000 012
Q ss_pred HHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccc-cccCCCCCCee
Q 013204 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFG-CDKYSIKPDLV 269 (447)
Q Consensus 191 ~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~-~~~~~~~~d~v 269 (447)
+++++.+. ++...+++..|.|++ | ...+.+.+++|.++|+++|+++|.||+|..+...+.... ....+....++
T Consensus 152 ~~l~~~~~---~~~~~i~i~~p~NPt-G-~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi 226 (387)
T PRK07683 152 EALENAIT---EKTRCVVLPYPSNPT-G-VTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTI 226 (387)
T ss_pred HHHHHhcC---cCceEEEEeCCCCCC-C-cCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeE
Confidence 55666553 233334455555554 4 455788999999999999999999999997743332211 12212222222
Q ss_pred ---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHHHHHHHH
Q 013204 270 ---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQVNKIAPKF 344 (447)
Q Consensus 270 ---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~~~~~~l 344 (447)
+|||.++.+++++|++++++++++.+... ......+.+.+++.++.+.|+.-. .+...+.++++.+.+
T Consensus 227 ~~~s~SK~~~~pGlRiG~i~~~~~l~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 299 (387)
T PRK07683 227 VINGLSKSHSMTGWRIGFLFAPSYLAKHILKV-------HQYNVTCASSISQYAALEALTAGKDDAKMMRHQYKKRRDYV 299 (387)
T ss_pred EEeeccccccCccceeEEEEcCHHHHHHHHHH-------HHhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 58999984449999999999998887632 111123345566766666664211 123345556666666
Q ss_pred HHhHhhccCCCceeeEeeeee-EEEEEeecCCCCCCCCCCCcchHHHHHHH-HHHcCceEEeeC-------CEEEEecCC
Q 013204 345 QDGVKAFSDSPIIGEIRGTGL-ILGTEFADNKSPNEPFPPEWGIGAYFGAQ-CEKHGMLVRVSG-------DNIMMSPPF 415 (447)
Q Consensus 345 ~~~L~~l~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~Gi~~~~~g-------~~iR~~~~~ 415 (447)
.+.|+++ + +....+.|. ++.+.+.....+ ...+... +.++||.+.++. +.+||+ +
T Consensus 300 ~~~l~~~---~-~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~--~ 363 (387)
T PRK07683 300 YNRLISM---G-LDVEKPTGAFYLFPSIGHFTMS----------SFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLS--Y 363 (387)
T ss_pred HHHHHHc---C-CcccCCCeeEEEEEecccCCCC----------HHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEE--e
Confidence 6666654 2 112233444 444444321100 2235544 567899998752 579999 5
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 013204 416 IMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 416 ~~t~e~i~~~~~~l~~~l~~ 435 (447)
..+++++.+++++|.+.+.+
T Consensus 364 ~~~~~~~~~al~~l~~~l~~ 383 (387)
T PRK07683 364 AYSIETLKEGLDRLEAFLQQ 383 (387)
T ss_pred cCCHHHHHHHHHHHHHHHHh
Confidence 56899999999999988753
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-19 Score=174.00 Aligned_cols=304 Identities=13% Similarity=0.081 Sum_probs=194.9
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQ 111 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~A 111 (447)
..+++|++++. +++|...+.+.+ ..+..+ +.. ..+|.+.+++.+ +.++|++++|+.+|+..+
T Consensus 19 ~~~~i~l~~ne--~p~~~~~~~~~~---~~~~~y---------p~~-~~~Lr~~ia~~~---~~~~I~it~Gs~~al~~~ 80 (330)
T PRK05664 19 LADWLDLSTGI--APWPWPVPAIPA---DAWARL---------PET-DDGLEAAARAYY---GAPQLLPVAGSQAAIQAL 80 (330)
T ss_pred HHHheeecCCc--CCCCCCCcccCH---HHHHhC---------CCC-hHHHHHHHHHHh---CCCCEEECcCHHHHHHHH
Confidence 34679998776 677765444432 222221 111 257888888887 457899999999998876
Q ss_pred HHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHH
Q 013204 112 VKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191 (447)
Q Consensus 112 l~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (447)
+.+ ..+++|++.+|+|.+....+...+.... .++ .+
T Consensus 81 ~~~----------~~gd~v~v~~P~y~~~~~~~~~~g~~~~-------------~v~---------------------~~ 116 (330)
T PRK05664 81 PRL----------RAPGRVGVLSPCYAEHAHAWRRAGHQVR-------------ELD---------------------EA 116 (330)
T ss_pred HHc----------cCCCEEEEcCCChHHHHHHHHHcCCeEE-------------Eec---------------------hh
Confidence 531 2347899999999888655444332211 111 13
Q ss_pred HHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee--
Q 013204 192 NLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV-- 269 (447)
Q Consensus 192 ~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v-- 269 (447)
++++.+. +...+++++|.|++| ...+.+.+++|.++|+++|+++|.||+|.++... .. ...+.-.+.++
T Consensus 117 ~~~~~~~----~~~~v~l~nP~NPTG--~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~-~s--~~~~~~~~~vi~~ 187 (330)
T PRK05664 117 EVEAALD----SLDVLVVVNPNNPTG--RRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQ-HS--LAACAHRPGLIVL 187 (330)
T ss_pred hHhhhhc----CCCEEEEeCCcCCCC--CccCHHHHHHHHHHHHhcCCEEEEECCcccCCCc-cc--ccccccCCCEEEE
Confidence 4444443 223578888987766 4557788999999999999999999999866321 11 11111123333
Q ss_pred -eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHh
Q 013204 270 -SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVEQVNKIAPKFQDG 347 (447)
Q Consensus 270 -~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~~~~~~~~~l~~~ 347 (447)
+|||.++.+++++|++++++++++.+... ..++..+.+++.++.++|+... .+...+.++++.+++.+.
T Consensus 188 ~SfSK~~gl~GlRiG~~v~~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~ 258 (330)
T PRK05664 188 RSFGKFFGLAGARLGFVLAEPALLRALAEL---------LGPWTVSGPTRWLAQAALADTPWQRRQRERLLAASQRLAAL 258 (330)
T ss_pred eeccccccCCCcceEEEEeCHHHHHHHHHh---------cCCCCCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 68999984449999999999998888631 1234456677777777775322 133456666666777777
Q ss_pred HhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC--CEEEEecCCCCCHHHHHHH
Q 013204 348 VKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--DNIMMSPPFIMSPEEVDEL 425 (447)
Q Consensus 348 L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g--~~iR~~~~~~~t~e~i~~~ 425 (447)
|+++ ++ ....+.+.++.+.+. . ...+.+.|+++||.+...+ +.+|++ +..++++++++
T Consensus 259 L~~~---~~-~~~~~~~~f~~~~~~--~------------~~~~~~~l~~~gi~v~~f~~~~~iRis--~~~~~~~~~~l 318 (330)
T PRK05664 259 LRRH---GL-TPAGGCALFQWVRTE--D------------AAALHEFLARRGILTRLFEQPASLRFG--LPADEADWARL 318 (330)
T ss_pred HHHC---CC-cccCCcceEEEEecC--C------------HHHHHHHHHHCCeEEEECCCCCeEEEE--CCCCHHHHHHH
Confidence 7665 21 111222344444432 1 3468888999999998754 679999 44478888888
Q ss_pred HHHHHHHHHH
Q 013204 426 ISKYGKALKA 435 (447)
Q Consensus 426 ~~~l~~~l~~ 435 (447)
.+.|++..++
T Consensus 319 ~~al~~~~~~ 328 (330)
T PRK05664 319 DQALLAYRKE 328 (330)
T ss_pred HHHHHHHHhh
Confidence 8888776554
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-19 Score=175.16 Aligned_cols=337 Identities=14% Similarity=0.100 Sum_probs=197.4
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCC-cccccCcCCChHHHHHHHHHHHhcCc-CCCC-eEEEeCChhhH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP-FYHSFWNRTTKPSLDLAKELLEMFTA-SKMA-KVFFTNSGSEA 107 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~-~v~~~~sGseA 107 (447)
.|..++||..+. ..++ .++.+.+++.+.+.... ..++...+..+....+++.+.+.+.. ...+ .+++++|++++
T Consensus 27 ~~~~~~~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~ 103 (383)
T TIGR03540 27 EGVDVISLGIGD--PDLP-TPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEG 103 (383)
T ss_pred cCCCeEEeCCCC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHH
Confidence 467889998774 3445 47788999888775421 11221122223344444444433221 2344 68899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 108 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 108 ~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
+..+++... ..++.|++.+|+|.++.......+.... .++..... .+ .
T Consensus 104 l~~~~~~~~--------~~gd~vlv~~P~y~~~~~~~~~~G~~v~-------------~v~~~~~~----------g~-~ 151 (383)
T TIGR03540 104 IAHIPLAFV--------NPGDIVLVPDPGYPVYRIGTLFAGGEPY-------------EMPLKEEN----------GF-L 151 (383)
T ss_pred HHHHHHHhC--------CCCCEEEEeCCCCcchHHHHHhcCCEEE-------------EEecCccc----------CC-c
Confidence 999988663 3357899999999887655444332211 11110000 00 0
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-cc-ccCCCC
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-GC-DKYSIK 265 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~~-~~~~~~ 265 (447)
.+++++++.+. ++...++++.|.|++ | ..++.+.+++|.++|++||+++|+||+|..+...+... .. ...+..
T Consensus 152 ~d~~~l~~~~~---~~~~~v~i~~P~NPt-G-~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~ 226 (383)
T TIGR03540 152 PDFDAIPEDIA---KKAKLMFINYPNNPT-G-AVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAK 226 (383)
T ss_pred cCHHHHHhhcc---ccceEEEEeCCCCCc-C-ccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcc
Confidence 01355655543 223334444465554 4 56688999999999999999999999998764433211 11 111111
Q ss_pred ---CCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHHHH
Q 013204 266 ---PDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQVNKI 340 (447)
Q Consensus 266 ---~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~~~ 340 (447)
..+-+|||.++..++|+|++++++++++.+... ......+.+.+.+.++.++++... -++..+.++++
T Consensus 227 ~~~i~~~SfSK~~g~~GlRiG~~i~~~~l~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 299 (383)
T TIGR03540 227 DVGIEFHSLSKTYNMTGWRIGMAVGNADLIAGLGKV-------KTNVDSGVFQAIQYAAIAALNGPQDVVKEIRKIYQRR 299 (383)
T ss_pred cCEEEEEecccccCCccceeeEEeCCHHHHHHHHHH-------HHhcccCCChHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 223378999975448999999999998877632 111122334455666666664211 12334555566
Q ss_pred HHHHHHhHhhccCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEee-------CCEEEE
Q 013204 341 APKFQDGVKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVS-------GDNIMM 411 (447)
Q Consensus 341 ~~~l~~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------g~~iR~ 411 (447)
.+.+.+.|++. ++ ...... |.++.+.+.+.. ....+...|+ ++||.+.++ .+.+||
T Consensus 300 ~~~~~~~L~~~---~~-~~~~~~~~~~~~~~l~~~~-----------~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ri 364 (383)
T TIGR03540 300 RDLLLEALKKI---GI-DVEKPKATFYVWVPVPEGY-----------TSAEFAARLLEETGVVVTPGVGFGEYGEGYIRI 364 (383)
T ss_pred HHHHHHHHHhC---CC-EecCCCcceEEEEECCCCC-----------CHHHHHHHHHHHCCEEEecchhhCccCCCeEEE
Confidence 66666666654 22 222333 445666664321 1345777765 689999875 146999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q 013204 412 SPPFIMSPEEVDELISKYGK 431 (447)
Q Consensus 412 ~~~~~~t~e~i~~~~~~l~~ 431 (447)
+ +..+++++.+++++|.+
T Consensus 365 s--~~~~~~~l~~~l~~l~~ 382 (383)
T TIGR03540 365 S--LTVPDERLEEAVARIKK 382 (383)
T ss_pred E--ecCCHHHHHHHHHHHhh
Confidence 9 55788888888887754
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-19 Score=175.91 Aligned_cols=354 Identities=14% Similarity=0.083 Sum_probs=211.6
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc-CCCCeEEEeCChhhHHH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA-SKMAKVFFTNSGSEAND 109 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~v~~~~sGseA~~ 109 (447)
.|.+.+|+..+.. .++ .+|.+.+++.+.+......+....+..+....+++.+.+.+.. ...+++++++|+++|+.
T Consensus 31 ~~~~~i~l~~g~p--~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 107 (402)
T PRK06107 31 AGRSIVDLTVGEP--DFD-TPDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIF 107 (402)
T ss_pred ccCCEEEcCCCCC--CCC-CCHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHH
Confidence 3567889877753 233 4788999988888643222332234445666677777665432 35678999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (447)
.+++... ..++.|++.++.|.++........+.. ..++++.... +. .+
T Consensus 108 ~~~~~~~--------~~gd~vl~~~p~y~~y~~~~~~~~~~~-------------~~v~~~~~~~----------~~-~~ 155 (402)
T PRK06107 108 LALMATL--------EAGDEVIIPAPYWVSYPDMVLANDGTP-------------VIVACPEEQG----------FK-LT 155 (402)
T ss_pred HHHHHhc--------CCCCEEEEecCCCcCHHHHHHHcCCEE-------------EEecCCcccC----------CC-CC
Confidence 9987543 335788999998877754333322211 1111110000 00 01
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhc-CCEEEEehhhcCCCccccccc-c-cc-CCCC
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKY-DILFIADEVICAFGRLGTMFG-C-DK-YSIK 265 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~-g~~li~DEv~~g~g~~g~~~~-~-~~-~~~~ 265 (447)
++++++.+. ++..+++++.|.|++| ..++.+.+++|+++|++| ++++|+||+|..+...+..+. . .. .+..
T Consensus 156 ~~~l~~~~~---~~~~~v~l~~p~NPtG--~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~ 230 (402)
T PRK06107 156 PEALEAAIT---PRTRWLILNAPSNPTG--AVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELR 230 (402)
T ss_pred HHHHHhhcC---cCceEEEEECCCCCCC--cCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCcc
Confidence 256666553 3344566666766665 566889999999999998 999999999987644442211 1 11 1122
Q ss_pred CCee---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHHHH
Q 013204 266 PDLV---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQVNKI 340 (447)
Q Consensus 266 ~d~v---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~~~ 340 (447)
..++ +|||.++..++++|++++++++++.+... ....+++.+.+++.++...|+.-. -++..+.++++
T Consensus 231 ~~vi~~~S~SK~~~~pGlRiG~~~~~~~~~~~~~~~-------~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 303 (402)
T PRK06107 231 DRVLVTNGVSKTYAMTGWRIGYAAGPADLIAAINKL-------QSQSSSCPSSISQAAAAAALNGDQSFVTESVAVYKQR 303 (402)
T ss_pred CCEEEEeccchhhcCcccceeeeecCHHHHHHHHHH-------HHhcccCCChHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 2344 46899874448999999999998887632 222345667778877777764110 12233455555
Q ss_pred HHHHHHhHhhccCCCceeeEeeee-eEEEEEeecCCCCCCCCCCCcchHHHHHHH-HHHcCceEEeeC-----CEEEEec
Q 013204 341 APKFQDGVKAFSDSPIIGEIRGTG-LILGTEFADNKSPNEPFPPEWGIGAYFGAQ-CEKHGMLVRVSG-----DNIMMSP 413 (447)
Q Consensus 341 ~~~l~~~L~~l~~~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~Gi~~~~~g-----~~iR~~~ 413 (447)
.+.+.+.|+++ +.+....+.| .++++.+..-.....+..........+... +.++||.+.++. +.+|++
T Consensus 304 ~~~~~~~L~~~---~g~~~~~p~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis- 379 (402)
T PRK06107 304 RDYALALLNAI---PGLSCLVPDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLS- 379 (402)
T ss_pred HHHHHHHHhcC---CCCcccCCCcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEE-
Confidence 55666666554 2222233334 445555531100000000000012345544 457899998762 569999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q 013204 414 PFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 414 ~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+..++|++++++++|.+.++++
T Consensus 380 -~~~~~e~l~~~l~~l~~~l~~~ 401 (402)
T PRK06107 380 -IATSLETLEEACARIERAVAAL 401 (402)
T ss_pred -eCCCHHHHHHHHHHHHHHHHhc
Confidence 6678999999999999988765
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-19 Score=178.24 Aligned_cols=344 Identities=14% Similarity=0.088 Sum_probs=208.3
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcc-cccCc----CCChHHHHHHHHHHHhcCcCCCCeEEEeCChhh
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY-HSFWN----RTTKPSLDLAKELLEMFTASKMAKVFFTNSGSE 106 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~~~~----~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGse 106 (447)
+..|||..+. |..++.+.+++.+.+.+.... ++... ...+...++.+.+++++...+.++|+|++|+++
T Consensus 32 ~~iyLd~a~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~ 105 (424)
T PLN02855 32 KLVYLDNAAT------SQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATE 105 (424)
T ss_pred CeEEeeCccc------cCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHH
Confidence 3578887433 446788999998887653211 11000 011234567778888774333579999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhh---cccCCccccCCCCCCCCcceecCCCCcccCCCCCCChh
Q 013204 107 ANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAA---SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEE 183 (447)
Q Consensus 107 A~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (447)
++..+++..... .-..+++|++..+.|++...... ...|... ..++.....
T Consensus 106 al~~i~~~~~~~----~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v------------~~v~~~~~~---------- 159 (424)
T PLN02855 106 AINLVAYTWGLA----NLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVL------------KFVGLTPDE---------- 159 (424)
T ss_pred HHHHHHHHhhhh----cCCCcCEEEECCCccHHHHHHHHHHHHHcCCEE------------EEEecCCCC----------
Confidence 999988753100 00234678887777765421111 1112111 111111000
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCC
Q 013204 184 EYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYS 263 (447)
Q Consensus 184 ~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~ 263 (447)
..+++++++.+. .++.+|++..+++..|.+.+ +++|.++|+++|+++++|++|. +|.. . +....
T Consensus 160 ---~~~~~~l~~~i~----~~t~lv~i~~~~n~tG~~~~----~~~I~~l~~~~g~~vivD~a~~-~g~~--~--~~~~~ 223 (424)
T PLN02855 160 ---VLDVEQLKELLS----EKTKLVATHHVSNVLGSILP----VEDIVHWAHAVGAKVLVDACQS-VPHM--P--VDVQT 223 (424)
T ss_pred ---CcCHHHHHHHhc----cCceEEEEeCccccccccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCc--C--CCchh
Confidence 011366777664 25677888888888888887 8999999999999999999996 4432 1 22223
Q ss_pred CCCCeeee--cccCCCcccceeEEEeChhHHHHhhhccCCCCc----c---------Cc-CCCCCCcHHHHHHHHHHHHH
Q 013204 264 IKPDLVSF--AKALSSAYMPIGAILVSPEVSEVIHSQSNTLGS----F---------SH-GFTYSGHPVSCAVAIEALKI 327 (447)
Q Consensus 264 ~~~d~v~~--sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~----~---------~~-~~t~~~~~~~~~aa~a~l~~ 327 (447)
..+|++++ .| +.|+ .++|++++++++++.+......... + .. ....+.+..++++..++++.
T Consensus 224 ~~~d~~~~s~~K-~~gp-~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~ 301 (424)
T PLN02855 224 LGADFLVASSHK-MCGP-TGIGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDY 301 (424)
T ss_pred cCCCEEEeeccc-ccCC-CccEEEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHH
Confidence 34788754 58 5554 4689999999887766421000000 0 00 01112455566666677776
Q ss_pred Hhh---hcHHHHHHHHHHHHHHhHhhccCCCceeeE----eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc-C
Q 013204 328 YKE---RNIVEQVNKIAPKFQDGVKAFSDSPIIGEI----RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH-G 399 (447)
Q Consensus 328 ~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~----~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-G 399 (447)
+.+ ++..++..++.+++++.|+++.+..+.... ...+.++.+.+.... ...+.+.|.++ |
T Consensus 302 ~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~~------------~~~v~~~L~~~~g 369 (424)
T PLN02855 302 LSEIGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEGIH------------PTDLSTFLDQQHG 369 (424)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEECCcC------------HHHHHHHhcccCC
Confidence 654 345567777778888877765332222211 122445555554211 34577888777 9
Q ss_pred ceEEeeC-------------CEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 400 MLVRVSG-------------DNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 400 i~~~~~g-------------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
|.++.+. ..+|+++++.+|++||+++++.|+++++.++
T Consensus 370 I~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~~~ 420 (424)
T PLN02855 370 VAIRSGHHCAQPLHRYLGVNASARASLYFYNTKEEVDAFIHALKDTIAFFS 420 (424)
T ss_pred EEEechhhhhHHHHHHhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence 9887431 4699999999999999999999999887753
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-19 Score=179.81 Aligned_cols=326 Identities=13% Similarity=0.073 Sum_probs=199.5
Q ss_pred EEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc--CCCCeEEEeCChhhHHHHH
Q 013204 34 KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA--SKMAKVFFTNSGSEANDTQ 111 (447)
Q Consensus 34 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~v~~~~sGseA~~~A 111 (447)
..+||..+ .+.....|.+.+++.+....... ++ +.....+|.+.+++++.. ...++|++++|+.+|+..+
T Consensus 86 ~~i~L~~g---~p~~~~~p~~~~~~~~~~~~~~~-Y~----~~~g~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~ 157 (431)
T PRK15481 86 PLHDLAGG---NPDPQRLPDLSRYFARLSRTPRL-YG----DAPVSPELHAWAARWLRDDCPVAFEIDLTSGAIDAIERL 157 (431)
T ss_pred hhhhhhcC---CCChhHhHHHHHHHHHhhhhhhh-cC----CcCCCHHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHH
Confidence 34566554 22222346667777665443211 11 122234455566655421 2345899999999999999
Q ss_pred HHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHH
Q 013204 112 VKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191 (447)
Q Consensus 112 l~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (447)
++.+. ..++.|++.+|+|.+........+.... .++..+. + .+++
T Consensus 158 ~~~l~--------~pgd~Vlv~~P~y~~~~~~~~~~g~~~~-------------~v~~~~~------g--------~~~~ 202 (431)
T PRK15481 158 LCAHL--------LPGDSVAVEDPCFLSSINMLRYAGFSAS-------------PVSVDAE------G--------MQPE 202 (431)
T ss_pred HHHhC--------CCCCEEEEeCCCcHHHHHHHHHcCCeEE-------------eeccCCC------C--------CCHH
Confidence 98763 3357899999999888655544332211 1111000 0 0136
Q ss_pred HHHHHHHhhCCCcEEEEEE-ccccCCCCCccCChhHHHHHHHHHHhc-CCEEEEehhhcCCCccccccccccCCCCCCee
Q 013204 192 NLEDLILKEGPETIAAFIA-EPVIGAGGVIPPPATYFEKVQAVVKKY-DILFIADEVICAFGRLGTMFGCDKYSIKPDLV 269 (447)
Q Consensus 192 ~le~~l~~~~~~~~a~vi~-epv~~~~G~~~~~~~~l~~l~~l~~~~-g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v 269 (447)
++++.+.. +..+++++ +|.|++| ...+.+.+++|.++|++| ++++|.||+|..|...+...... ...+.++
T Consensus 203 ~l~~~~~~---~~k~i~~~p~p~NPTG--~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~--~~~~~vi 275 (431)
T PRK15481 203 KLERALAQ---GARAVILTPRAHNPTG--CSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIP--QTTQRWA 275 (431)
T ss_pred HHHHHHhc---CCCEEEECCCCCCCCC--ccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCc--CCCCCEE
Confidence 77777652 22234444 4556665 455788899999999999 99999999998774322111111 1123333
Q ss_pred ---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh----hcHHHHHHHHHH
Q 013204 270 ---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE----RNIVEQVNKIAP 342 (447)
Q Consensus 270 ---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~----~~~~~~~~~~~~ 342 (447)
+|||.++.| +++|++++++++++.+... ....+++.+.+++.++.++|+.-.- .+..+.++++.+
T Consensus 276 ~~~SfSK~~~~G-lRiG~~i~~~~~~~~~~~~-------~~~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~ 347 (431)
T PRK15481 276 LIRSVSKALGPD-LRLAFVASDSATSARLRLR-------LNSGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQ 347 (431)
T ss_pred EEeeeccccCCC-ceeEEEeCCHHHHHHHHHH-------HhccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 689999954 9999999999998887531 1112345677888888777753111 123455555566
Q ss_pred HHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC--------CEEEEecC
Q 013204 343 KFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--------DNIMMSPP 414 (447)
Q Consensus 343 ~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g--------~~iR~~~~ 414 (447)
.+.+.|++. ++....+..|.++++.+... ...+.+.|.++||.+.++. +.+|++..
T Consensus 348 ~~~~~L~~~---~~~~~~p~gg~f~~~~l~~~-------------~~~~~~~l~~~gV~v~pg~~f~~~~~~~~iRis~~ 411 (431)
T PRK15481 348 KLARALQQY---GIAIPSPGDGLNLWLPLDTD-------------SQATALTLAKSGWLVREGEAFGVSAPSHGLRITLS 411 (431)
T ss_pred HHHHHHHHc---CCccccCCCeEEEEEECCCC-------------HHHHHHHHHHCCcEEecCCccccCCCCCeEEEEcC
Confidence 666666554 22111234566777776531 2357788889999998741 36999954
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 013204 415 FIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 415 ~~~t~e~i~~~~~~l~~~l~ 434 (447)
. .+++++++++++|.+++.
T Consensus 412 ~-~~~~~i~~~~~~l~~~~~ 430 (431)
T PRK15481 412 T-LNDAEINRLAADLHQALN 430 (431)
T ss_pred C-CChHHHHHHHHHHHHHhc
Confidence 2 579999999999998864
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-19 Score=171.82 Aligned_cols=332 Identities=14% Similarity=0.099 Sum_probs=196.0
Q ss_pred EEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCC-eEEEeCChhhHHHHHH
Q 013204 35 YLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMA-KVFFTNSGSEANDTQV 112 (447)
Q Consensus 35 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~-~v~~~~sGseA~~~Al 112 (447)
.+||.++.. .++ .+|++.+++.+.......| +...+..+....+++.+.+.+. ..+.+ +|++++|+++|+..++
T Consensus 2 ~~~~~~g~p--~~~-~~~~~~~~~~~~~~~~~~Y-~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~ 77 (350)
T TIGR03537 2 LFDFGTGDP--KEP-TPPFIRKALIDAVPEVSQY-PSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFP 77 (350)
T ss_pred eEeccCCCC--CCC-CCHHHHHHHHHHHhccCCC-CCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHH
Confidence 578877753 344 4788999988876543222 2112233444445555543322 23555 8999999999998888
Q ss_pred HHHHHHHHhcCCCC--cceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHH
Q 013204 113 KLVWYYNNALGRPN--KKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190 (447)
Q Consensus 113 ~~~~~~~~~~~~~~--~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (447)
..+. .++ ++.|++.+|+|.++.......+.... .++.... . .+ ..++
T Consensus 78 ~~~~-------~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~~-------------~v~~~~~-------~---~~-~~d~ 126 (350)
T TIGR03537 78 LVFI-------DPEEDRRRVIFGTPGYPVYERGALFAGGEPT-------------AVKLKKE-------D---GF-LLRL 126 (350)
T ss_pred HHHc-------CCCCCCceEEEcCCCCcchHHHHHhcCCEEE-------------EcccCcc-------c---CC-ccCH
Confidence 7653 122 26899999999888655544332211 1111000 0 00 0113
Q ss_pred HHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee-
Q 013204 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV- 269 (447)
Q Consensus 191 ~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v- 269 (447)
+++++.+.. +...++++.|.|++ | ...+.+.+++|.++|++||+++|+||+|..+...+........+. +.++
T Consensus 127 ~~l~~~~~~---~~~~i~i~~p~NPt-G-~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~i~ 200 (350)
T TIGR03537 127 EKVEKSILE---ETKIVWINYPHNPT-G-ATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEVGI-ENVLA 200 (350)
T ss_pred HHHHHhhhh---ccEEEEEeCCCCCc-C-cccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhhcCc-CCEEE
Confidence 667766642 23334445454554 4 556889999999999999999999999976522222211111111 2222
Q ss_pred --eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHH
Q 013204 270 --SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVEQVNKIAPKFQD 346 (447)
Q Consensus 270 --~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~~~~~~~~~l~~ 346 (447)
++||.++.+++++|++++++++++.+... ....+.+.+++++.++.+++..-+ ..+.+..++++.+.+.+
T Consensus 201 ~~s~SK~~g~~GlRiG~~~~~~~~~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~r~~l~~~~~~~~~ 273 (350)
T TIGR03537 201 FHSLSKRSGMTGYRSGFVAGDEKLISFLRKL-------RANFGVASPDFVQAAAKAAWSDDNHVLERRKIFKRKRDLFIE 273 (350)
T ss_pred EeecccccCCccccceeeecCHHHHHHHHHH-------HHhhccCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence 57999865458999999999988877632 111233444456665655553100 12234455555555555
Q ss_pred hHhhccCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-------CCEEEEecCCCCC
Q 013204 347 GVKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-------GDNIMMSPPFIMS 418 (447)
Q Consensus 347 ~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------g~~iR~~~~~~~t 418 (447)
.|++. ++ ...... |.++.+.++... ....+.+.|.++||.+.++ .+.+|++ +..+
T Consensus 274 ~l~~~---g~-~~~~~~g~~~~~~~~~~~~-----------~~~~l~~~L~~~gv~v~~g~~f~~~~~~~~Ri~--~~~~ 336 (350)
T TIGR03537 274 FFNKV---GL-EYLYPDATFYLWVKVPSGI-----------DAKDYALRLLENGIVVAPGENFGSGEEGYVRVA--LVPT 336 (350)
T ss_pred HHHHC---CC-cccCCCeEEEEEEECCCCC-----------CHHHHHHHHHHCCEEEcCchhhCCCCCCEEEEE--ecCC
Confidence 55553 22 122333 445566665321 1346888899999999864 2569999 4578
Q ss_pred HHHHHHHHHHHHH
Q 013204 419 PEEVDELISKYGK 431 (447)
Q Consensus 419 ~e~i~~~~~~l~~ 431 (447)
++++++++++|++
T Consensus 337 ~~~~~~~l~~~~~ 349 (350)
T TIGR03537 337 LEECEEALRLWER 349 (350)
T ss_pred HHHHHHHHHHHhc
Confidence 8999999998875
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-19 Score=175.12 Aligned_cols=336 Identities=12% Similarity=0.097 Sum_probs=194.5
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCC-cccccCcCCChHHHHHHHHHHHhcC-cCCCC-eEEEeCChhhH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP-FYHSFWNRTTKPSLDLAKELLEMFT-ASKMA-KVFFTNSGSEA 107 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~-~v~~~~sGseA 107 (447)
.|+.++||..+ ++....++++.+++.+.+.... ..++...+..+....+++.+.+.+. ...++ .+++++|+++|
T Consensus 33 ~g~~~i~l~~g---~p~~~~p~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~a 109 (394)
T PRK05942 33 QGLDLIDLGMG---NPDGAAPQPVIEAAIAALADPQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEG 109 (394)
T ss_pred cCCCeEEcCCC---CCCCCCCHHHHHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHH
Confidence 36678999766 4444456678888777765321 1122212223344444554443322 13455 58889999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 108 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 108 ~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
+..++.... ..+++|++.+|+|.+........+. .. ..++.... . .+ .
T Consensus 110 l~~~~~~~~--------~~gd~Vlv~~P~y~~~~~~~~~~g~-~~------------~~v~~~~~-------~---~~-~ 157 (394)
T PRK05942 110 LTHLALAYV--------NPGDVVLVPSPAYPAHFRGPLIAGA-QI------------YPIILKPE-------N---DW-L 157 (394)
T ss_pred HHHHHHHhC--------CCCCEEEEcCCCCcchHHHHHHcCC-EE------------EEeecCCc-------c---CC-c
Confidence 999888653 3457899999999887544333221 11 11111000 0 00 0
Q ss_pred HHHHHHHHHHHhhCCCcEEEEE-EccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-cc-ccCC-
Q 013204 188 RLANNLEDLILKEGPETIAAFI-AEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-GC-DKYS- 263 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi-~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~~-~~~~- 263 (447)
.+++++++.+. + ++.+|+ +.|.|++| ...+.+.+++|.++|++||+++|+||+|..+...+... .. ...+
T Consensus 158 ~d~~~l~~~~~---~-~~k~i~l~~P~NPtG--~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~ 231 (394)
T PRK05942 158 IDLSSIPEEVA---Q-QAKILYFNYPSNPTT--ATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGA 231 (394)
T ss_pred cCHHHHHHhcc---c-cceEEEEcCCCCCCC--CcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCc
Confidence 11356666553 2 344455 44756555 55688999999999999999999999998764433211 11 1111
Q ss_pred --CCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHHH
Q 013204 264 --IKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQVNK 339 (447)
Q Consensus 264 --~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~~ 339 (447)
....+-+|||.++.+++++|++++++++++.+... .....++.+.+++.++.++++..+ .++..+.+++
T Consensus 232 ~~~~i~~~SfSK~~~~~GlRiG~i~~~~~l~~~l~~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 304 (394)
T PRK05942 232 KDIGVEFHTLSKTYNMAGWRVGFVVGNRHIIQGLRTL-------KTNLDYGIFSALQKAAETALQLPDSYLQQVQERYRT 304 (394)
T ss_pred cccEEEEecchhccCChhhheeeeecCHHHHHHHHHH-------HhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 11223468998875448999999999999888632 111234445566666666665321 1234556666
Q ss_pred HHHHHHHhHhhccCCCceeeEeeeee-EEEEEeecCCCCCCCCCCCcchHHHHHHH-HHHcCceEEee-------CCEEE
Q 013204 340 IAPKFQDGVKAFSDSPIIGEIRGTGL-ILGTEFADNKSPNEPFPPEWGIGAYFGAQ-CEKHGMLVRVS-------GDNIM 410 (447)
Q Consensus 340 ~~~~l~~~L~~l~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~Gi~~~~~-------g~~iR 410 (447)
+.+.+.+.|+++ ++ ....+.|. ++.+.+..... ...+..+ +.++||.+.++ .+.+|
T Consensus 305 ~~~~~~~~L~~~---~~-~~~~~~~~~f~~~~~~~~~~-----------~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iR 369 (394)
T PRK05942 305 RRDFLIQGLGEL---GW-NIPPTKATMYLWVPCPVGMG-----------STDFALNVLQKTGVVVTPGNAFGEGGEGYVR 369 (394)
T ss_pred HHHHHHHHHHHC---CC-eecCCCeeeEEEEECCCCCC-----------HHHHHHHHHHHCCEEEeCChhhCcCCCCeEE
Confidence 666677766654 22 12233344 56666643211 2235544 55789998764 25799
Q ss_pred EecCCCCCHHHHHHHHHHHHH
Q 013204 411 MSPPFIMSPEEVDELISKYGK 431 (447)
Q Consensus 411 ~~~~~~~t~e~i~~~~~~l~~ 431 (447)
++. ..+.+.+.+++++|.+
T Consensus 370 is~--~~~~~~l~~~l~~l~~ 388 (394)
T PRK05942 370 ISL--IADCDRLGEALDRLKQ 388 (394)
T ss_pred EEe--cCCHHHHHHHHHHHHH
Confidence 995 4555666666665543
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-19 Score=174.86 Aligned_cols=320 Identities=12% Similarity=0.021 Sum_probs=194.8
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC--cCCCCeEEEeCChhhHH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT--ASKMAKVFFTNSGSEAN 108 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~v~~~~sGseA~ 108 (447)
.+..++|+.++. +....+|.+.+++.+...... +....+..+...++++.+.+.+. +.+.+++++++|+++++
T Consensus 19 ~~~~~i~l~~~~---p~~~~~~~~~~~~~~~~~~~~--Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i 93 (357)
T TIGR03539 19 HPDGIVDLSVGT---PVDPVPPLIRAALAAAADAPG--YPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELV 93 (357)
T ss_pred CCCCeEEccCCC---CCCCCCHHHHHHHHHHHhhCC--CCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHH
Confidence 466789998874 323357888888877654321 22222334555566666655433 24678999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHH
Q 013204 109 DTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188 (447)
Q Consensus 109 ~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (447)
..++.++. . ..++.|++.+++|.+........+... +.+++
T Consensus 94 ~~~~~~l~------~-~~gd~Vl~~~p~y~~~~~~~~~~g~~~---------------~~v~~----------------- 134 (357)
T TIGR03539 94 AWLPTLLG------L-GPGDTVVIPELAYPTYEVGALLAGATP---------------VAADD----------------- 134 (357)
T ss_pred HHHHHHHc------C-CCCCEEEECCCCcHHHHHHHHhcCCEE---------------eccCC-----------------
Confidence 88777541 1 335789999999987754433222111 00100
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccccc-cc--CC-C
Q 013204 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGC-DK--YS-I 264 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~-~~--~~-~ 264 (447)
.+.++ ++++++|+++..++.+| ...+.+.+++|.++|++||+++|.||+|..+...+..... .. .+ .
T Consensus 135 -~~~l~-------~~~~~~v~~~~p~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 205 (357)
T TIGR03539 135 -PTELD-------PVGPDLIWLNSPGNPTG-RVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGD 205 (357)
T ss_pred -hhhcC-------ccCccEEEEeCCCCCcC-ccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCc
Confidence 02111 12345555554444444 4567788999999999999999999999877544432111 10 01 1
Q ss_pred CCC-ee--eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHHHHHHH
Q 013204 265 KPD-LV--SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVEQVNKI 340 (447)
Q Consensus 265 ~~d-~v--~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~~~~~~ 340 (447)
... ++ +|||.++.+++++|++++++++++.+... .....++.+.+++.++.++|+... .......++++
T Consensus 206 ~~~vi~~~S~SK~~~~~G~R~G~~i~~~~~~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 278 (357)
T TIGR03539 206 HTGLLAVHSLSKRSNLAGYRAGFVAGDPALVAELLTV-------RKHAGLMVPAPVQAAMVAALGDDGHVAEQKARYAAR 278 (357)
T ss_pred cccEEEEeccccccCCCceeEEEEecCHHHHHHHHHH-------HhhcccCCCHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 112 33 68998865449999999999988877532 122345567777777777664211 12234555566
Q ss_pred HHHHHHhHhhccCCCceeeEeeeee-EEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-------CEEEEe
Q 013204 341 APKFQDGVKAFSDSPIIGEIRGTGL-ILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-------DNIMMS 412 (447)
Q Consensus 341 ~~~l~~~L~~l~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-------~~iR~~ 412 (447)
.+.+.+.|++. ... ...+.|. ++.+.+.. . ...+.+.|.++||.+.++. +.+|++
T Consensus 279 ~~~~~~~L~~~-g~~---~~~p~~~~~~~~~~~~-~------------~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis 341 (357)
T TIGR03539 279 RAQLKPALEKA-GFR---IDHSEAGLYLWATRGE-D------------AWDTVDRLAELGILVAPGDFYGPAGSQHVRVA 341 (357)
T ss_pred HHHHHHHHHHc-CCC---CcCCCccEEEEEECCC-C------------HHHHHHHHHhCCEEECCccccCCCCCCeEEEE
Confidence 66666666654 211 1223344 44444321 1 3357788899999998752 569999
Q ss_pred cCCCCCHHHHHHHHHHH
Q 013204 413 PPFIMSPEEVDELISKY 429 (447)
Q Consensus 413 ~~~~~t~e~i~~~~~~l 429 (447)
+..++++|++++++|
T Consensus 342 --~~~~~~~i~~~~~~l 356 (357)
T TIGR03539 342 --LTATDERIAAAVARL 356 (357)
T ss_pred --ecCCHHHHHHHHHhh
Confidence 556889999999876
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-19 Score=173.97 Aligned_cols=339 Identities=14% Similarity=0.084 Sum_probs=196.4
Q ss_pred EEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCC-eEEEeCChhhHHHHH
Q 013204 34 KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMA-KVFFTNSGSEANDTQ 111 (447)
Q Consensus 34 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~-~v~~~~sGseA~~~A 111 (447)
.++|+..+..... .++.+.+++.+.+......+....+.......+++.+.+.+. ...++ ++++++||++|+..+
T Consensus 25 ~~i~l~~g~p~~~---~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~ 101 (387)
T PRK07777 25 GAVNLGQGFPDED---GPPEMLEAAQEAIAGGVNQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAA 101 (387)
T ss_pred CeEEccCCCCCCC---CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHH
Confidence 5788877753322 357788887777654222222212233334444444444432 12333 699999999999998
Q ss_pred HHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHH
Q 013204 112 VKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191 (447)
Q Consensus 112 l~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (447)
+.... .++++|++..+.|++........+.... .+++.+. +. .+ ..+++
T Consensus 102 ~~~~~--------~~gd~vli~~p~y~~~~~~~~~~g~~~~-------------~~~~~~~------~~---~~-~~d~~ 150 (387)
T PRK07777 102 VLGLV--------EPGDEVLLIEPYYDSYAAVIAMAGAHRV-------------PVPLVPD------GR---GF-ALDLD 150 (387)
T ss_pred HHHhc--------CCCCEEEEeCCCchhhHHHHHHCCCEEE-------------EeecCCc------cC---CC-cCCHH
Confidence 87542 3347899999999877533332221110 1111000 00 00 01136
Q ss_pred HHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-ccc-cCCCCCC-e
Q 013204 192 NLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-GCD-KYSIKPD-L 268 (447)
Q Consensus 192 ~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~~~-~~~~~~d-~ 268 (447)
++++.+. + ++.+|++++.++.+|. ..+.+.+++|.++|++|++++|+||+|.++...+..+ ... ..+...+ +
T Consensus 151 ~l~~~~~---~-~~~~v~l~~p~NPtG~-~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i 225 (387)
T PRK07777 151 ALRAAVT---P-RTRALIVNSPHNPTGT-VLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTV 225 (387)
T ss_pred HHHHhcC---c-ccEEEEEcCCCCCCCc-cCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEE
Confidence 6666553 2 3445555555555664 4478899999999999999999999998775433211 111 1122112 2
Q ss_pred --eeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHHHHHHHH
Q 013204 269 --VSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQVNKIAPKF 344 (447)
Q Consensus 269 --v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~~~~~~l 344 (447)
.+|||.++.+++++|++++++++++.+... ....++..+.+.+.++..+++..+ .+...+.++++.+.+
T Consensus 226 ~~~S~SK~~g~~GlRiG~~~~~~~l~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l 298 (387)
T PRK07777 226 TISSAAKTFNVTGWKIGWACGPAPLIAAVRAA-------KQYLTYVGGAPFQPAVAHALDHEDAWVAALRDSLQAKRDRL 298 (387)
T ss_pred EEeechhhccCcCceeEEEecCHHHHHHHHHH-------HhhcccCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 358999985448999999999988877632 121234334444444444443211 123456667777777
Q ss_pred HHhHhhccCCCceeeEeeeee-EEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEeeC----------CEEEEe
Q 013204 345 QDGVKAFSDSPIIGEIRGTGL-ILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVSG----------DNIMMS 412 (447)
Q Consensus 345 ~~~L~~l~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~g----------~~iR~~ 412 (447)
.+.|+++ ... ...+.|. ++.+.+...... ....+.+.|+ ++||.+.++. +.+|++
T Consensus 299 ~~~L~~~-~~~---~~~~~g~~~~~~~~~~~~~~---------~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~ 365 (387)
T PRK07777 299 AAGLAEA-GFE---VHDSAGTYFLCADPRPLGYD---------DGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFA 365 (387)
T ss_pred HHHHHhC-CCC---ccCCCcceEEEecccccCCC---------CHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEE
Confidence 7777664 222 1223333 444554321100 1346888886 5799997652 369999
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q 013204 413 PPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 413 ~~~~~t~e~i~~~~~~l~~~l 433 (447)
+..+++++++++++|.+..
T Consensus 366 --~~~~~~~l~~~l~~l~~~~ 384 (387)
T PRK07777 366 --FCKRDDTLDEAIRRLRALR 384 (387)
T ss_pred --ecCCHHHHHHHHHHHHHHh
Confidence 5568999999999997654
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-19 Score=176.08 Aligned_cols=341 Identities=15% Similarity=0.125 Sum_probs=199.3
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhHHHHH
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEANDTQ 111 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA~~~A 111 (447)
..++||..+. ..++. ++.+.+++.+.+......+....+..+....+++.+.+.+. ...++++++++|+++|+..+
T Consensus 33 ~~~i~l~~~~--~~~~~-~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~ 109 (391)
T PRK08361 33 ENVISLGIGE--PDFDT-PKNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLA 109 (391)
T ss_pred cCeEEcCCCC--CCCCC-CHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHH
Confidence 4578887664 33443 67888888887765322221112233333344444433322 24567999999999999999
Q ss_pred HHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHH
Q 013204 112 VKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191 (447)
Q Consensus 112 l~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (447)
++... ..++.|++.+++|.+....... .|... ..++...... + ..+++
T Consensus 110 ~~~l~--------~~g~~Vlv~~p~y~~~~~~~~~-~g~~~------------~~v~~~~~~~----------~-~~d~~ 157 (391)
T PRK08361 110 FESLL--------EEGDEVIIPDPAFVCYVEDAKI-AEAKP------------IRIPLREENE----------F-QPDPD 157 (391)
T ss_pred HHHhc--------CCCCEEEEcCCCCcccHHHHHH-cCCEE------------EEEecCCccC----------C-CCCHH
Confidence 88663 2347899999999776543332 22111 1111110000 0 01136
Q ss_pred HHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccc-cccccCCCCCCee-
Q 013204 192 NLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTM-FGCDKYSIKPDLV- 269 (447)
Q Consensus 192 ~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~-~~~~~~~~~~d~v- 269 (447)
++++.+. ++...++++.|.|+ +| ...+.+.+++|.++|+++++++|+||+|..+...+.. ..........+++
T Consensus 158 ~l~~~i~---~~~~~v~i~~p~NP-tG-~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~ 232 (391)
T PRK08361 158 ELLELIT---KRTRMIVINYPNNP-TG-ATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILA 232 (391)
T ss_pred HHHHhcc---cccEEEEEeCCCCC-CC-cCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEE
Confidence 6666654 22334445556454 45 4557788999999999999999999999876433221 1111111112233
Q ss_pred -eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh----hcHHHHHHHHHHHH
Q 013204 270 -SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE----RNIVEQVNKIAPKF 344 (447)
Q Consensus 270 -~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~----~~~~~~~~~~~~~l 344 (447)
++||.++..++++|++++++++++.+... ....+++.+.+.+.++.++|+.-.. ++..+.++++.+.+
T Consensus 233 ~s~SK~~~~~GlRiG~~~~~~~~~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 305 (391)
T PRK08361 233 NSFSKTFAMTGWRLGFVIAPEQVIKDMIKL-------HAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLV 305 (391)
T ss_pred ecCchhcCCcHhhhhhhccCHHHHHHHHHH-------HhhhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHH
Confidence 58999874448999999999988876531 1112344566667766666642111 22334445555555
Q ss_pred HHhHhhccCCCceeeEeeee-eEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEeeC-------CEEEEecCC
Q 013204 345 QDGVKAFSDSPIIGEIRGTG-LILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVSG-------DNIMMSPPF 415 (447)
Q Consensus 345 ~~~L~~l~~~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~g-------~~iR~~~~~ 415 (447)
.+.|+++ +.+......| .++.+.+..... ....+.+.|+ ++||.+.++. +.+|++ +
T Consensus 306 ~~~L~~~---~~~~~~~p~g~~~~~~~l~~~~~----------~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~--~ 370 (391)
T PRK08361 306 LKRLKEM---PHIKVFEPKGAFYVFANIDETGM----------SSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRIS--Y 370 (391)
T ss_pred HHHHHhC---CCCeecCCCEEEEEEEECCCCCC----------CHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEE--e
Confidence 6666554 2223333444 445556642111 1335677776 5799998741 469999 5
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 013204 416 IMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 416 ~~t~e~i~~~~~~l~~~l~~ 435 (447)
..+++++++++++|++.+++
T Consensus 371 ~~~~~~l~~al~~l~~~l~~ 390 (391)
T PRK08361 371 ATSKEKLIEAMERMEKALEE 390 (391)
T ss_pred cCCHHHHHHHHHHHHHHHhc
Confidence 56888999999999888754
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.8e-19 Score=172.19 Aligned_cols=337 Identities=17% Similarity=0.203 Sum_probs=198.9
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC----cCCCCeEEEeCChhhH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT----ASKMAKVFFTNSGSEA 107 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~v~~~~sGseA 107 (447)
|..++||..+. ..++ .++.+.+++.+.......+ . +.....++.+.+++++. +.+.+++++++|+++|
T Consensus 29 ~~~~i~l~~~~--~~~~-~~~~~~~a~~~~~~~~~~Y-~----~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~a 100 (397)
T PRK07568 29 GIKVYHLNIGQ--PDIK-TPEVFFEAIKNYDEEVLAY-S----HSQGIPELREAFAKYYKKWGIDVEPDEILITNGGSEA 100 (397)
T ss_pred CCCEEEecCCC--CCCC-CCHHHHHHHHHHhcCCcCc-C----CCCCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHH
Confidence 44578886664 2233 3678888877655432212 1 12223444444444431 2466799999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 108 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 108 ~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
+..++.... ..+++|++.++.|......... .|... ..++..... + +..
T Consensus 101 l~~~~~~l~--------~~gd~Vl~~~p~y~~~~~~~~~-~g~~~------------~~v~~~~~~-----g-----~~~ 149 (397)
T PRK07568 101 ILFAMMAIC--------DPGDEILVPEPFYANYNGFATS-AGVKI------------VPVTTKIEE-----G-----FHL 149 (397)
T ss_pred HHHHHHHhc--------CCCCEEEEecCCCccHHHHHHH-cCCEE------------EEeecCccc-----C-----CCC
Confidence 999887653 2347899989988765432222 12111 111110000 0 000
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-c-cccCCCC
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-G-CDKYSIK 265 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~-~~~~~~~ 265 (447)
.+++++++.+. ++...++++.|.|++ | ...+.+.+++|.++|+++|+++|+||+|.+|...+... . ....+..
T Consensus 150 ~~~~~l~~~~~---~~~~~v~i~~p~NPt-G-~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~ 224 (397)
T PRK07568 150 PSKEEIEKLIT---PKTKAILISNPGNPT-G-VVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLE 224 (397)
T ss_pred CCHHHHHHhcC---ccceEEEEECCCCCC-C-ccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCc
Confidence 01255666553 233344455665555 4 45677889999999999999999999999885554321 1 1222223
Q ss_pred CCee---eecccCCCcccceeEEEeC-hhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHHH
Q 013204 266 PDLV---SFAKALSSAYMPIGAILVS-PEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQVNK 339 (447)
Q Consensus 266 ~d~v---~~sK~l~gg~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~~ 339 (447)
+.++ +|||.++..++++|+++++ +++++.+... .. .+++.+.+++.++.++++..+ -+++.+.+++
T Consensus 225 ~~~i~~~S~SK~~~~~G~R~G~~~~~~~~~~~~~~~~-------~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~ 296 (397)
T PRK07568 225 DRVIIIDSVSKRYSACGARIGCLISKNKELIAAAMKL-------CQ-ARLSPPTLEQIGAAALLDTPESYFDEVREEYKK 296 (397)
T ss_pred CCEEEEecchhhccCCCcceEEEecCCHHHHHHHHHH-------hh-ccCCCCcHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 3444 6899998634899999985 6787766421 11 134556667776666665211 1234455666
Q ss_pred HHHHHHHhHhhccCCCceeeEeeeee-EEEEEeecCCCCCCCCCCCcchHHHHHHHHHH------cCceEEee-------
Q 013204 340 IAPKFQDGVKAFSDSPIIGEIRGTGL-ILGTEFADNKSPNEPFPPEWGIGAYFGAQCEK------HGMLVRVS------- 405 (447)
Q Consensus 340 ~~~~l~~~L~~l~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~Gi~~~~~------- 405 (447)
+.+.+.+.|+++ +.+....+.|. ++.+.+.... ...+.+.|++ +||.+.++
T Consensus 297 ~~~~l~~~L~~~---~~~~~~~p~g~~~~~~~l~~~~------------~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~ 361 (397)
T PRK07568 297 RRDILYEELNKI---PGVVCEKPKGAFYIIAKLPVDD------------AEDFAKWLLTDFNYNGETVMVAPASGFYATP 361 (397)
T ss_pred HHHHHHHHHhcC---CCceecCCCcceEEEEecCCCC------------HHHHHHHHHhhcccccceEEEeCchHhcCCC
Confidence 666676666654 22222334444 4556654311 3346666664 58998864
Q ss_pred ---CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 406 ---GDNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 406 ---g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
.+.+|++ +..+++++++++++|.+++++..
T Consensus 362 ~~~~~~iRls--~~~~~~~~~~~~~~l~~~l~~~~ 394 (397)
T PRK07568 362 GLGKNEIRIA--YVLNEEDLKRAMEILKEALEKYN 394 (397)
T ss_pred CCCCCeEEEE--EeCCHHHHHHHHHHHHHHHHHhh
Confidence 1469999 55788999999999999887644
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5e-20 Score=170.07 Aligned_cols=279 Identities=14% Similarity=0.115 Sum_probs=178.6
Q ss_pred CHHHHHHHHHHHhcC-CcccccCcCCChHHHHHHHHHHHhcCc--CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCc
Q 013204 51 EPRLVAAATAQLNTL-PFYHSFWNRTTKPSLDLAKELLEMFTA--SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNK 127 (447)
Q Consensus 51 ~p~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~ 127 (447)
+..|.+++++.+... ...++...+.......|++++...+.. ...++|++++|+.+|+..++.... ..+
T Consensus 46 P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~--------~~G 117 (420)
T KOG0257|consen 46 PKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLL--------NPG 117 (420)
T ss_pred cHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHc--------CCC
Confidence 446778888888763 222222234566677777887775532 355689999999999999988765 456
Q ss_pred ceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEE
Q 013204 128 KKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAA 207 (447)
Q Consensus 128 ~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~ 207 (447)
+.||+++|.|..+.......++.+.+...- ..... ...+ .|. .+.+++|..+. +++.++
T Consensus 118 DeVii~eP~fd~Y~~~~~maG~tpv~v~~~-~~~g~-~~s~---~~~-------------~D~~~le~~~t---~kTk~I 176 (420)
T KOG0257|consen 118 DEVIVFEPFFDCYIPQVVMAGGTPVFVPLK-PKEGN-VSSS---DWT-------------LDPEELESKIT---EKTKAI 176 (420)
T ss_pred CEEEEecCcchhhhhHHhhcCCcceeeccc-ccccc-ccCc---ccc-------------CChHHHHhhcc---CCccEE
Confidence 999999999999988888888776654322 11111 0001 111 11377887776 345567
Q ss_pred EEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc---ccccccCCCCCC---eeeecccCCCcccc
Q 013204 208 FIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT---MFGCDKYSIKPD---LVSFAKALSSAYMP 281 (447)
Q Consensus 208 vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~---~~~~~~~~~~~d---~v~~sK~l~gg~~~ 281 (447)
+++.|.|+.| .+.+++.|++|+++|++||+++|+||||.-+-..|. .++.. .|+... +-.+||.++--+|+
T Consensus 177 i~ntPhNPtG--kvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~asl-Pgm~ertitvgS~gKtf~~TGWr 253 (420)
T KOG0257|consen 177 ILNTPHNPTG--KVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASL-PGMYERTITVGSFGKTFGVTGWR 253 (420)
T ss_pred EEeCCCCCcC--cccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecC-CchhheEEEeccccceeeeeeee
Confidence 7777777776 677999999999999999999999999987766664 22222 333322 33578977653499
Q ss_pred eeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh----------hhcHHHHHHHHHHHHHHhHhhc
Q 013204 282 IGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK----------ERNIVEQVNKIAPKFQDGVKAF 351 (447)
Q Consensus 282 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~----------~~~~~~~~~~~~~~l~~~L~~l 351 (447)
+|++++++.++...... ..-..+..+...+.|..+++..-. ..++...++++++.+.+.|+++
T Consensus 254 lGW~igp~~L~~~~~~v-------h~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~l 326 (420)
T KOG0257|consen 254 LGWAIGPKHLYSALFPV-------HQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEEL 326 (420)
T ss_pred eeeeechHHhhhhHHHH-------hhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999988887776531 122233333223333333332211 1235567788888888888887
Q ss_pred cCCCceeeEeeeee-EEEEEee
Q 013204 352 SDSPIIGEIRGTGL-ILGTEFA 372 (447)
Q Consensus 352 ~~~~~~~~~~~~g~-~~~i~~~ 372 (447)
+.++ .-++|. ++..++.
T Consensus 327 -g~~v---~~p~gayyl~adfs 344 (420)
T KOG0257|consen 327 -GLKV---TGPEGAYYLWADFS 344 (420)
T ss_pred -CCcc---ccCCCceEEEEecc
Confidence 3332 223444 4455665
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.2e-19 Score=173.63 Aligned_cols=342 Identities=13% Similarity=0.099 Sum_probs=201.8
Q ss_pred CCEEEecCCccccc--cCCCCCHHHHHHHHHHHhcCCc-ccccCcCCChHHHHHHHHHHHhcC----cCCCCeEEEeCCh
Q 013204 32 GKKYLDSLAGLWCT--ALGGSEPRLVAAATAQLNTLPF-YHSFWNRTTKPSLDLAKELLEMFT----ASKMAKVFFTNSG 104 (447)
Q Consensus 32 g~~~lD~~~~~~~~--~lG~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~v~~~~sG 104 (447)
|+.++++..+.... .++ .++.+.+++.+.+..... .+. +.....++.+.+++++. ....+++++++|+
T Consensus 30 ~~~~i~l~~g~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~Y~----~~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~ 104 (401)
T TIGR01264 30 EKPMIKLSIGDPTVFGNLP-TDPEVMQAMKDSLDSGKYNGYA----PTVGALSAREAIASYYHNPDGPIEADDVVLCSGC 104 (401)
T ss_pred CCCeeecCCCCCCCcCCCC-CCHHHHHHHHHHHhccCCCCCC----CCCCCHHHHHHHHHHHhhcCCCCCHHHEEECcCh
Confidence 57889987764321 244 478899998887765211 121 22233455555555542 1356789999999
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhH
Q 013204 105 SEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEE 184 (447)
Q Consensus 105 seA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (447)
++|+..++.... .+++.|++.+|+|..+.......+. .. ..++++....
T Consensus 105 ~~al~~~~~~l~--------~~gd~v~i~~P~y~~~~~~~~~~g~-~v------------~~~~~~~~~~---------- 153 (401)
T TIGR01264 105 SHAIEMCIAALA--------NAGQNILVPRPGFPLYETLAESMGI-EV------------KLYNLLPDKS---------- 153 (401)
T ss_pred HHHHHHHHHHhC--------CCCCEEEEeCCCChhHHHHHHHcCC-EE------------EEeecCCccC----------
Confidence 999999998663 2346899999999776543332221 11 0111100000
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCC
Q 013204 185 YSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSI 264 (447)
Q Consensus 185 ~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~ 264 (447)
+ ..+++.+++.+. .+...++++.|.|++| ...+.+.+++|.++|+++|+++|+||+|.+|...+..+. ....+
T Consensus 154 ~-~~d~~~l~~~~~---~~~~~v~~~~p~NPtG--~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~-~~~~~ 226 (401)
T TIGR01264 154 W-EIDLKQLESLID---EKTAALIVNNPSNPCG--SVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFE-PLASL 226 (401)
T ss_pred C-CCCHHHHHHHhc---cCceEEEEcCCCCCCC--CCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccc-cHHHc
Confidence 0 001356666553 2233344455655554 355788999999999999999999999998755443211 11112
Q ss_pred CCC--ee---eecccCCCcccceeEEEeCh------hHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh---
Q 013204 265 KPD--LV---SFAKALSSAYMPIGAILVSP------EVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE--- 330 (447)
Q Consensus 265 ~~d--~v---~~sK~l~gg~~~~g~~~~~~------~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~--- 330 (447)
.++ ++ +|||.++.+++|+|++++++ ++++.+.. +.. ..+..+++++.++.+.|+...+
T Consensus 227 ~~~~~vi~~~SfSK~~~~~GlRiG~iv~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~q~a~~~~l~~~~~~~l 298 (401)
T TIGR01264 227 SSTVPILSCGGLAKRWLVPGWRLGWIIIHDRRGILRDIRDGLVK-------LSQ-RILGPCTIVQGALPSILLRTPQEYF 298 (401)
T ss_pred CCCCcEEEEccCcccCCCccceEEEEEecCcchhHHHHHHHHHH-------Hhh-ccCCCCcHHHHHHHHHHHhCcHHHH
Confidence 222 33 58998666559999999864 34444431 111 1344566777777776653111
Q ss_pred hcHHHHHHHHHHHHHHhHhhccCCCceee-EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEeeC--
Q 013204 331 RNIVEQVNKIAPKFQDGVKAFSDSPIIGE-IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVSG-- 406 (447)
Q Consensus 331 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~g-- 406 (447)
++..+.++++.+.+.+.|+++. .+.. .+..|.++.+.+.....+.. . ....+.+.++ ++||++.++.
T Consensus 299 ~~~~~~~~~~r~~l~~~L~~~~---~~~~~~p~~g~f~~~~~~~~~~~~~--~----~~~~~~~~l~~~~gI~v~pg~~f 369 (401)
T TIGR01264 299 DGTLSVLESNAMLCYGALAAVP---GLRPVMPSGAMYMMVGIEMEHFPEF--K----NDVEFTERLVAEQSVFCLPGSCF 369 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC---CCcccCCCeeeEEEEEecccccCCC--C----CHHHHHHHHHHhCCEEEeCchhc
Confidence 2234455555566666666542 1222 23456677777653210000 0 1345667765 7899998753
Q ss_pred ---CEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 407 ---DNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 407 ---~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+.+|++ +..+++++++++++|.+.+++
T Consensus 370 ~~~~~iRis--~~~~~~~l~~~l~rl~~~~~~ 399 (401)
T TIGR01264 370 EYPGFFRVV--LTVPVVMMEEACSRIQEFCER 399 (401)
T ss_pred CCCCeEEEE--EcCCHHHHHHHHHHHHHHHhc
Confidence 579999 566899999999999988764
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.1e-19 Score=173.46 Aligned_cols=339 Identities=14% Similarity=0.111 Sum_probs=201.8
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCC-eEEEeCChhhHHHH
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMA-KVFFTNSGSEANDT 110 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~-~v~~~~sGseA~~~ 110 (447)
...+||..+... ++ .+|++.+++.+.+......+....+..+....+++.+.+.+. ...++ ++++++|+++|+..
T Consensus 26 ~~~i~l~~g~p~--~~-~p~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~ 102 (387)
T PRK08912 26 HGAINLGQGFPD--DP-GPEDVRRAAADALLDGSNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAA 102 (387)
T ss_pred CCeEEccCCCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHH
Confidence 457888877532 33 478888888877654222222222233444445555444332 23555 89999999999988
Q ss_pred HHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC-cccCCCCCCChhHHHHHH
Q 013204 111 QVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH-YWRYAHPGETEEEYSTRL 189 (447)
Q Consensus 111 Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 189 (447)
++.... .+++.|++.+++|..........+.. . ..++++. .+. .+
T Consensus 103 ~~~~~~--------~~gd~Vlv~~p~y~~~~~~~~~~g~~-~------------~~~~~~~~~~~-------------~~ 148 (387)
T PRK08912 103 ALLALV--------EPGDEVVLFQPLYDAYLPLIRRAGGV-P------------RLVRLEPPHWR-------------LP 148 (387)
T ss_pred HHHHhc--------CCCCEEEEeCCCchhhHHHHHHcCCE-E------------EEEecCcccCc-------------CC
Confidence 888653 23478999999998775444332211 1 1111110 000 01
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc--ccccCCCCC-
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF--GCDKYSIKP- 266 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~--~~~~~~~~~- 266 (447)
++++++.+. ++...++++.|.|++| ...+.+.+++|.++|++|++++|+||+|..+...+..+ .....+...
T Consensus 149 ~~~l~~~~~---~~~~~v~l~~p~NPtG--~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~ 223 (387)
T PRK08912 149 RAALAAAFS---PRTKAVLLNNPLNPAG--KVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRER 223 (387)
T ss_pred HHHHHHHhC---ccceEEEEeCCCCCcC--cccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCc
Confidence 366666654 2334455566656555 45577889999999999999999999998664333211 112222222
Q ss_pred Cee--eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHHHHHH
Q 013204 267 DLV--SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQVNKIAP 342 (447)
Q Consensus 267 d~v--~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~~~~~ 342 (447)
+++ ++||.++-+++++|++++++++++.+... .....++.++..+.++.+++.... -++..+.++++.+
T Consensus 224 ~i~~~S~SK~~g~~GlRiG~~~~~~~~~~~l~~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 296 (387)
T PRK08912 224 TVKIGSAGKIFSLTGWKVGFVCAAPPLLRVLAKA-------HQFLTFTTPPNLQAAVAYGLGKPDDYFEGMRADLARSRD 296 (387)
T ss_pred eEEEeechhhccCcCceeEEEecCHHHHHHHHHH-------HhhccccCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 233 57999883338999999999998887632 111234445555555555553111 1234566666777
Q ss_pred HHHHhHhhccCCCceeeEeeee-eEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEeeC---------CEEEE
Q 013204 343 KFQDGVKAFSDSPIIGEIRGTG-LILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVSG---------DNIMM 411 (447)
Q Consensus 343 ~l~~~L~~l~~~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~g---------~~iR~ 411 (447)
.+.+.|+.+ +.. .....| .++.+.+....... ....+.+.|+ ++||.+.++. +.+|+
T Consensus 297 ~l~~~L~~~-g~~---~~~~~g~~~l~~~l~~~~~~~--------~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl 364 (387)
T PRK08912 297 RLAAGLRRI-GFP---VLPSQGTYFLTVDLAPLGLAE--------DDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRF 364 (387)
T ss_pred HHHHHHHhC-CCc---ccCCCcceEEEecccccCCCC--------CHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEE
Confidence 777777664 222 222333 45556665311000 1345777765 5799988741 46999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHH
Q 013204 412 SPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 412 ~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
+ +..+++.+++++++|.+.++
T Consensus 365 ~--~~~~~~~l~~~l~rl~~~l~ 385 (387)
T PRK08912 365 C--FAKRDATLDEAVERLAAARR 385 (387)
T ss_pred E--EeCCHHHHHHHHHHHHHHHh
Confidence 9 55679999999999988775
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.8e-19 Score=173.74 Aligned_cols=356 Identities=12% Similarity=0.058 Sum_probs=206.5
Q ss_pred cEEEeCCCCEEEecCCcccccc--CCCCCHHHHHHHHHHHhcCC-cccccCcCCChHHHHHHHHHHHhcC-------cCC
Q 013204 25 SYVYDVNGKKYLDSLAGLWCTA--LGGSEPRLVAAATAQLNTLP-FYHSFWNRTTKPSLDLAKELLEMFT-------ASK 94 (447)
Q Consensus 25 ~~~~d~dg~~~lD~~~~~~~~~--lG~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~-------~~~ 94 (447)
..+.+..|+.++||..+..... +- .++.+.+++.+.+.... ..|+...+..+....+++.+.+.+. ..+
T Consensus 25 ~~~~~~~~~~~i~l~~g~p~~~~~~~-p~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~ 103 (412)
T PTZ00433 25 NAKPSPSPKSIIKLSVGDPTLDGNLL-TPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIK 103 (412)
T ss_pred hhccCCCCCCeeecCCcCCCCcCCCC-CCHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCC
Confidence 3445568899999987743210 22 46788888888776421 1122111223333334444433211 145
Q ss_pred CCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCccc
Q 013204 95 MAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWR 174 (447)
Q Consensus 95 ~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (447)
++++++++|+++|+..+++... .+++.|++.+|+|..+.......+... ..++.....
T Consensus 104 ~~~i~it~G~~~al~~~~~~~~--------~~gd~vlv~~P~y~~~~~~~~~~g~~~-------------~~i~~~~~~- 161 (412)
T PTZ00433 104 KDNVVLCSGVSHAILMALTALC--------DEGDNILVPAPGFPHYETVCKAYGIEM-------------RFYNCRPEK- 161 (412)
T ss_pred hhhEEEeCChHHHHHHHHHHhc--------CCCCEEEEccCCcccHHHHHHHcCCEE-------------EEEecCccc-
Confidence 6899999999999999998763 334789999999988754443322211 111110000
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccc
Q 013204 175 YAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLG 254 (447)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g 254 (447)
.+ ..+++++++.+. ++...++++.|.|++| ...+.+.+++|.++|++||+++|.||+|.+|...+
T Consensus 162 ---------~~-~~d~~~l~~~~~---~~~~~i~~~~p~NPtG--~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~ 226 (412)
T PTZ00433 162 ---------DW-EADLDEIRRLVD---DRTKALIMTNPSNPCG--SNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNG 226 (412)
T ss_pred ---------cC-cCCHHHHHHHhc---cCceEEEEeCCCCCCC--cccCHHHHHHHHHHHHHcCCeEEEeccccccccCC
Confidence 00 011356666554 2233445556655555 45578899999999999999999999999875443
Q ss_pred ccc-ccccCC-CCCCee--eecccCCCcccceeEEEe------ChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHH
Q 013204 255 TMF-GCDKYS-IKPDLV--SFAKALSSAYMPIGAILV------SPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEA 324 (447)
Q Consensus 255 ~~~-~~~~~~-~~~d~v--~~sK~l~gg~~~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~ 324 (447)
..+ ....+. -.+-++ +|||.++.+++|+|++++ .+++++.+... . ...++.+++++.++.+.
T Consensus 227 ~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~-------~-~~~~~~~~~~q~a~~~~ 298 (412)
T PTZ00433 227 ATFTSVADFDTTVPRVILGGTAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRL-------G-MLVCGPCSVVQAALGEA 298 (412)
T ss_pred CCccchhhccCCCceEEEccchhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHH-------h-hccCCCChHHHHHHHHH
Confidence 221 111111 112232 589998655599999996 24566665421 1 12345677777777666
Q ss_pred HHHH---hhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcC
Q 013204 325 LKIY---KERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHG 399 (447)
Q Consensus 325 l~~~---~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G 399 (447)
++.- .-++..+.++++.+.+.+.|++. ..+...... |.++.+.+....... . .....+.+.|+ ++|
T Consensus 299 l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~---~~~~~~~p~gg~f~~~~l~~~~~~~--~----~~~~~~~~~ll~~~g 369 (412)
T PTZ00433 299 LLNTPQEHLEQIVAKLEEGAMVLYNHIGEC---IGLSPTMPRGSMFLMSRLDLEKFRD--I----KSDVEFYEKLLEEEN 369 (412)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHHHhcC---CCCcccCCCeeEEEEEEechhhcCC--C----CCHHHHHHHHHHhcC
Confidence 6521 01223344555555555555543 112223343 556666665321000 0 01345777877 579
Q ss_pred ceEEeeC-----CEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 400 MLVRVSG-----DNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 400 i~~~~~g-----~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
|.+.++. +.+|++ +...++++++++++|.++++..+
T Consensus 370 V~v~pg~~f~~~~~iRis--~~~~~e~l~~al~~l~~~~~~~~ 410 (412)
T PTZ00433 370 VQVLPGEIFHMPGFTRLT--ISRPVEVLREAVERIKAFCERHK 410 (412)
T ss_pred EEEeCccccCCCCeEEEE--ecCCHHHHHHHHHHHHHHHHHhc
Confidence 9998763 579999 55678999999999999887544
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.4e-19 Score=171.82 Aligned_cols=340 Identities=14% Similarity=0.093 Sum_probs=203.7
Q ss_pred EEEecCCccccccCCCCCHHHHHHHHHHHhcCCc-ccccCcCCChHHHHHHHHHHHhcCc-CC-CCeEEEeCChhhHHHH
Q 013204 34 KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPF-YHSFWNRTTKPSLDLAKELLEMFTA-SK-MAKVFFTNSGSEANDT 110 (447)
Q Consensus 34 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~-~~-~~~v~~~~sGseA~~~ 110 (447)
..+|+..|. ..+. .++.+.+++.+.+..... .+....+..+....+++.+.+.+.. .. .+.+++++|+++++..
T Consensus 28 ~~~~l~~g~--~~~~-~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~ 104 (389)
T PRK05957 28 GTISLGQGV--VSYP-PPPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMN 104 (389)
T ss_pred CeEEccCCC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHH
Confidence 357776554 2344 577888998887654321 2222334455666777777766532 12 5689999999999988
Q ss_pred HHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHH
Q 013204 111 QVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190 (447)
Q Consensus 111 Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (447)
++.... .+++.|++.+|.|......... .|... ..++..+.+. .++
T Consensus 105 ~~~~~~--------~~gd~Vlv~~P~y~~~~~~~~~-~g~~~------------~~v~~~~~~~-------------~d~ 150 (389)
T PRK05957 105 AILAIT--------DPGDEIILNTPYYFNHEMAITM-AGCQP------------ILVPTDDNYQ-------------LQP 150 (389)
T ss_pred HHHHhc--------CCCCEEEEeCCCCcCHHHHHHh-cCCEE------------EEeecCCCCC-------------cCH
Confidence 887653 3347889889998665433222 22111 1111111000 113
Q ss_pred HHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-c-cccCCCCCC-
Q 013204 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-G-CDKYSIKPD- 267 (447)
Q Consensus 191 ~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~-~~~~~~~~d- 267 (447)
+++++.+. ++...++++.| ++.+| ...+.+.+++|.++|++||+++|+||+|..+...+... . ....+....
T Consensus 151 ~~l~~~i~---~~~klv~~~~p-~NPtG-~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~ 225 (389)
T PRK05957 151 EAIEQAIT---PKTRAIVTISP-NNPTG-VVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHT 225 (389)
T ss_pred HHHHHhcC---cCceEEEEeCC-CCCCC-cCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcE
Confidence 66776654 23334444555 44455 45577889999999999999999999998774433211 1 111122222
Q ss_pred --eeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHHHHHHH
Q 013204 268 --LVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQVNKIAPK 343 (447)
Q Consensus 268 --~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~~~~~~ 343 (447)
+-+|||.++.+++++|++++++++++.+... ......+.+.+++.++..+|+.-. -++..+.++++.+.
T Consensus 226 i~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~ 298 (389)
T PRK05957 226 ISLYSLSKAYGFASWRIGYMVIPIHLLEAIKKI-------QDTILICPPVVSQYAALGALQVGKSYCQQHLPEIAQVRQI 298 (389)
T ss_pred EEEecchhhccCccceeEEEecCHHHHHHHHHH-------HhhcccCCCcHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 3368999875448999999999999888642 111233445566666666664210 12233455666666
Q ss_pred HHHhHhhccCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEeeC-------CEEEEecC
Q 013204 344 FQDGVKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVSG-------DNIMMSPP 414 (447)
Q Consensus 344 l~~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~g-------~~iR~~~~ 414 (447)
+.+.|+++... ....... |.++.+.+.... ....+.++|+ ++||.+.++. +.+|++..
T Consensus 299 l~~~L~~~~~~--~~~~~~~gg~~~~~~~~~~~-----------~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~ 365 (389)
T PRK05957 299 LLKSLGQLQDR--CTLHPANGAFYCFLKVNTDL-----------NDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYG 365 (389)
T ss_pred HHHHHHhcCCC--ccccCCCeeEEEEEeCCCCC-----------ChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEe
Confidence 66666654211 1112233 455566654321 1345778876 5899999752 36999943
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 013204 415 FIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 415 ~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
..+++++++++++|.+.++++
T Consensus 366 -~~~~~~l~~~~~~l~~~~~~~ 386 (389)
T PRK05957 366 -ALQKATAKEGIERLVQGLKTI 386 (389)
T ss_pred -cCCHHHHHHHHHHHHHHHHhh
Confidence 358999999999998887663
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-19 Score=172.50 Aligned_cols=306 Identities=15% Similarity=0.116 Sum_probs=197.8
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHH
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQV 112 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al 112 (447)
.+++||+++- +++|...+.+.. ..+.. .+... .+|.+.+++.+.-...++|++++|+++++....
T Consensus 24 ~~~i~ls~Ne--np~~~~~~~~~~---~~~~~---------Yp~~~-~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~ 88 (339)
T PRK06959 24 DAWLDLSTGI--NPHGYPVPPVPA---DAWRR---------LPEDD-DGLAACAARYYGAPDAAHVLPVAGSQAAIRALP 88 (339)
T ss_pred hhhceeccCC--CCCCCCCCCCCH---HHHHh---------CCCch-HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHH
Confidence 5789998887 888865333321 12222 13333 789999999875434579999999999987554
Q ss_pred HHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHH
Q 013204 113 KLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 192 (447)
Q Consensus 113 ~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (447)
.+. .+ ..|++.+|+|.++.......+.... .++.. . +.
T Consensus 89 ~~~---------~~-g~v~v~~P~y~~y~~~~~~~g~~~~-------------~v~~~-------------~------~~ 126 (339)
T PRK06959 89 ALL---------PR-GRVGIAPLAYSEYAPAFARHGHRVV-------------PLDEA-------------A------DT 126 (339)
T ss_pred Hhc---------CC-CeEEEcCCCcHHHHHHHHHCCCEEE-------------eeccc-------------c------hh
Confidence 332 22 2488899999887655543322110 01110 0 11
Q ss_pred HHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee---
Q 013204 193 LEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--- 269 (447)
Q Consensus 193 le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--- 269 (447)
+.+ ....+++++|.|++| ...+.+.++++.+.|+++++++|+||+|..|... .. ...... .++++
T Consensus 127 ~~~-------~~~~v~l~nPnNPTG--~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~-~s-~~~~~~-~~~vi~l~ 194 (339)
T PRK06959 127 LPA-------ALTHLIVVNPNNPTA--ERLPAARLLRWHAQLAARGGTLIVDEAFADTLPA-AS-LAAHTD-RPGLVVLR 194 (339)
T ss_pred ccc-------cCCEEEEeCCCCCCC--CCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCc-cc-chhccC-CCCEEEEe
Confidence 111 122578888877666 4557788999999999999999999999977321 11 111111 23333
Q ss_pred eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHhH
Q 013204 270 SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVEQVNKIAPKFQDGV 348 (447)
Q Consensus 270 ~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~~~~~~~~~l~~~L 348 (447)
+|||.++.+++|+|++++++++++.+... . ..+..+.+++.++.++|+.-. .+...+.+++.++++.+.|
T Consensus 195 SfSK~~gl~GlRiGy~v~~~~li~~l~~~-------~--~~~~vs~~~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L 265 (339)
T PRK06959 195 SVGKFFGLAGVRAGFVLAAPALLAALRDA-------L--GAWTVSGPARHAVRAAFADAAWQAAMRERLAADGARLAALL 265 (339)
T ss_pred cChhhcCCcchheEEEecCHHHHHHHHHh-------c--CCCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999984449999999999999988742 1 245557778888888775211 1334566666777777777
Q ss_pred hhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC--CEEEEecCCCCCHHHHHHHH
Q 013204 349 KAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--DNIMMSPPFIMSPEEVDELI 426 (447)
Q Consensus 349 ~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g--~~iR~~~~~~~t~e~i~~~~ 426 (447)
+++ +.... ..+.++.+.+.+ ...+.+.|+++||.++.++ +.+|++ +..+++++++++
T Consensus 266 ~~~-g~~~~----~~~~f~~~~~~~--------------~~~l~~~l~~~GI~vr~~~~~~~lRis--i~~~~~e~~~l~ 324 (339)
T PRK06959 266 RAH-GFAVH----ATPLFSWTDDPR--------------AAALHAALARRGIWTRYFAPPPSVRFG--LPADEAEWQRLE 324 (339)
T ss_pred HHC-CCCcc----CcceEEEEeCCC--------------HHHHHHHHHhCCeEEEECCCCCeEEEE--CCCCHHHHHHHH
Confidence 775 22221 234554554421 3458889999999998765 579999 446889999999
Q ss_pred HHHHHHHHHHH
Q 013204 427 SKYGKALKATE 437 (447)
Q Consensus 427 ~~l~~~l~~~~ 437 (447)
++|++.++.+.
T Consensus 325 ~al~~~~~~~~ 335 (339)
T PRK06959 325 DALAECVPTLA 335 (339)
T ss_pred HHHHHHHHHHh
Confidence 99988877654
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-19 Score=172.83 Aligned_cols=323 Identities=15% Similarity=0.216 Sum_probs=196.8
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCC-CCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcc
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASK-MAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKK 128 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~ 128 (447)
-+|.+.+++...... .... ..+...++.+.+++.+.-.+ ...+++++||+++++.++..+. .+++
T Consensus 10 ~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~--------~~~~ 75 (355)
T TIGR03301 10 TSATVRDAMLVDWCH---WDSE---FNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLV--------PRDG 75 (355)
T ss_pred CCHHHHHHhhhhccC---CCHH---HHHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhcc--------CCCC
Confidence 356666666652211 1111 12566778888888774222 2368889999999999998763 2346
Q ss_pred eEEEEcCCCccchhh-hhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEE
Q 013204 129 KFIARQKSYHGSTLI-AASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAA 207 (447)
Q Consensus 129 ~vi~~~~~yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~ 207 (447)
++++.++.+++.... .....|.+. ..++.++.+. .+.+++++.+... + .+..
T Consensus 76 ~vi~~~~~~~~~~~~~~a~~~g~~~------------~~i~~~~~~~-------------~d~~~l~~~l~~~-~-~~~~ 128 (355)
T TIGR03301 76 KLLVLINGAYGERLAKICEYLGIPH------------TDLNFSEYEP-------------PDLNRIEEALAAD-P-DITH 128 (355)
T ss_pred eEEEECCCchhhHHHHHHHHcCCce------------EEEecCCCCC-------------CCHHHHHHHHHhC-C-CceE
Confidence 778777777775322 111112111 1111111000 0137788877642 2 3445
Q ss_pred EEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCcccceeEE
Q 013204 208 FIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSAYMPIGAI 285 (447)
Q Consensus 208 vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg~~~~g~~ 285 (447)
+++..+++.+|.+.+ +++|.++|++||+++|+|++++ +|.. .+....+ ..|++ +++|+++|+ .++|++
T Consensus 129 v~~~~~~~~~G~~~~----~~~i~~l~~~~~~~livD~~~s-~g~~--~~~~~~~--~~d~~~~s~~K~l~~~-~G~g~~ 198 (355)
T TIGR03301 129 VATVHHETTTGILNP----LEAIAKVARSHGAVLIVDAMSS-FGAI--PIDIEEL--DVDALIASANKCLEGV-PGFGFV 198 (355)
T ss_pred EEEEecCCcccchhH----HHHHHHHHHHcCCEEEEEeccc-cCCc--ccchhhc--CccEEEecCCcccccC-CceeEE
Confidence 554445556677766 8999999999999999999887 5432 2222333 35655 567998775 578999
Q ss_pred EeChhHHHHhhhccCCCC-cc---------CcCCCCCCcHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHhHhhc
Q 013204 286 LVSPEVSEVIHSQSNTLG-SF---------SHGFTYSGHPVSCAVAIEALKIYKER----NIVEQVNKIAPKFQDGVKAF 351 (447)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~-~~---------~~~~t~~~~~~~~~aa~a~l~~~~~~----~~~~~~~~~~~~l~~~L~~l 351 (447)
++++++++.+........ .+ .....++.+...+.++.++++.+.++ +..++++++.+++++.|+++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~ 278 (355)
T TIGR03301 199 IARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRAL 278 (355)
T ss_pred EECHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999887752110000 00 01123456777777777788766443 34566777788888888775
Q ss_pred cCCCceee-EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC----CEEEEecCCCCCHHHHHHHH
Q 013204 352 SDSPIIGE-IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG----DNIMMSPPFIMSPEEVDELI 426 (447)
Q Consensus 352 ~~~~~~~~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g----~~iR~~~~~~~t~e~i~~~~ 426 (447)
+..++.. ....+.++.+.++..... ....+.++|.++||++.+++ +.+||+++..++++++++++
T Consensus 279 -g~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~gi~i~~~~~~~~~~iRis~~~~~~~~~i~~~~ 348 (355)
T TIGR03301 279 -GFQPLLPERWQSPIIVSFLYPDDPDF---------DFDDFYQELKERGFVIYPGKLTLADTFRIGTIGEIDAADIERLL 348 (355)
T ss_pred -CCeeecCCCCCCCcEEEEECCCCCcc---------hHHHHHHHHHHCCEEEECCccccccEEEEecCCCCCHHHHHHHH
Confidence 2222211 122334445555431100 13458889999999998764 57999998889999999999
Q ss_pred HHHHHHH
Q 013204 427 SKYGKAL 433 (447)
Q Consensus 427 ~~l~~~l 433 (447)
+.|++++
T Consensus 349 ~~l~~~~ 355 (355)
T TIGR03301 349 EAIKDAL 355 (355)
T ss_pred HHHHhhC
Confidence 9998753
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-18 Score=174.56 Aligned_cols=344 Identities=14% Similarity=0.074 Sum_probs=199.5
Q ss_pred CHHHHHHHHHHHhcCC---cccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCC
Q 013204 51 EPRLVAAATAQLNTLP---FYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPN 126 (447)
Q Consensus 51 ~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~ 126 (447)
+..+.+++.+.++... ..|+...+..+....+++.+.+... ...+++|++++|+++|+..+++.+.. ..
T Consensus 90 P~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~-------~~ 162 (481)
T PTZ00377 90 PADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIG-------DP 162 (481)
T ss_pred CHHHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhcc-------CC
Confidence 4467777776655421 1122222333344444444443321 24678999999999999999987630 13
Q ss_pred cceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhC--CCc
Q 013204 127 KKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEG--PET 204 (447)
Q Consensus 127 ~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~--~~~ 204 (447)
++.|++.+|.|.++.......+..... +++..... + ..++++|++.+.... ..+
T Consensus 163 gD~Vlv~~P~y~~y~~~~~~~g~~~v~-------------v~~~~~~~----------~-~~d~~~l~~~l~~~~~~~~~ 218 (481)
T PTZ00377 163 SDGVMIPIPQYPLYSAAITLLGGKQVP-------------YYLDEEKG----------W-SLDQEELEEAYEQAVRNGIT 218 (481)
T ss_pred CCEEEECCCCchhHHHHHHHcCCEEEE-------------EEeccccC----------C-CCCHHHHHHHHHHHHhcCCC
Confidence 478999999999886555443332211 11100000 0 001377777775321 113
Q ss_pred E-EEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccc-ccc-cc-cc-CCCCC------Cee---e
Q 013204 205 I-AAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLG-TMF-GC-DK-YSIKP------DLV---S 270 (447)
Q Consensus 205 ~-a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g-~~~-~~-~~-~~~~~------d~v---~ 270 (447)
+ +++++.|.|++| .+.+.+.+++|.++|++||+++|.||+|..+...+ ..+ .+ .. .++.+ .++ +
T Consensus 219 ~k~l~l~~P~NPTG--~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S 296 (481)
T PTZ00377 219 PRALVVINPGNPTG--QVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHS 296 (481)
T ss_pred eeEEEEECCCCCCC--cCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEec
Confidence 4 466777766665 56688999999999999999999999998764422 122 11 00 11211 233 4
Q ss_pred ecccC-CCcccceeEEEe---ChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHH----------H-h-hhcHH
Q 013204 271 FAKAL-SSAYMPIGAILV---SPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKI----------Y-K-ERNIV 334 (447)
Q Consensus 271 ~sK~l-~gg~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~----------~-~-~~~~~ 334 (447)
|||.+ +-.++|+|++++ ++++++.+... . ...++.+.+++.++.++++. . . .....
T Consensus 297 ~SK~~~~~~GlRiG~~~~~~~p~~li~~l~~~-------~-~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 368 (481)
T PTZ00377 297 TSKGIIGECGRRGGYFELTNIPPEVREQIYKL-------A-SINLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIF 368 (481)
T ss_pred CCcccccCCcCceEEEEEeCCCHHHHHHHHHH-------h-heecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHH
Confidence 79985 423399999986 88888888632 1 12345677788887777741 0 0 01122
Q ss_pred HHHHHHHHHHHHhHhhccCCCceeeEeeeee-EEEEEeecCCCCCCCCCC-CcchHHH-HHHHHHHcCceEEeeC-----
Q 013204 335 EQVNKIAPKFQDGVKAFSDSPIIGEIRGTGL-ILGTEFADNKSPNEPFPP-EWGIGAY-FGAQCEKHGMLVRVSG----- 406 (447)
Q Consensus 335 ~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~~Gi~~~~~g----- 406 (447)
..++++.+.+.+.|+++ +.+......|. ++.+++..+......... ....... +...+.++||.+.++.
T Consensus 369 ~~~~~rr~~l~~~L~~~---~g~~~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~ 445 (481)
T PTZ00377 369 TSLKRRAELLTDELNKI---EGVSCQPVEGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQK 445 (481)
T ss_pred HHHHHHHHHHHHHHhcC---CCcEeecCCeeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCC
Confidence 23455555566666554 33444455554 444444311100000000 0000122 3455667899998752
Q ss_pred ---CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 013204 407 ---DNIMMSPPFIMSPEEVDELISKYGKALKATEERV 440 (447)
Q Consensus 407 ---~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~ 440 (447)
+.+|++ +..+++++++++++|.+++++..+++
T Consensus 446 ~~~~~~Rls--~~~~~e~l~~~l~rl~~~~~~~~~~~ 480 (481)
T PTZ00377 446 PGTYHFRIT--ILPPEEQIEEMVKKIKEFHESFMKKY 480 (481)
T ss_pred CCCCEEEEE--ECCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 369999 56788999999999999998877664
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7e-19 Score=171.40 Aligned_cols=328 Identities=11% Similarity=-0.007 Sum_probs=194.0
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhHHH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEAND 109 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA~~ 109 (447)
.|+.++||..|. ..++ .++.+.+++.+....... ++...+..+....+++.+.+.+. ...+++|++++|+++|+.
T Consensus 22 ~~~~~i~l~~~~--p~~~-~~~~~~~a~~~~~~~~~~-Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~ 97 (374)
T PRK05839 22 KEYKGLDLTIGE--PQFE-TPKFIQDALKNNAHLLNK-YPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLF 97 (374)
T ss_pred CCCCeEEcCCCC--CCCC-CCHHHHHHHHHHhhccCC-CCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHH
Confidence 488999998775 3455 467888888776543222 22222333445556666655542 246789999999999998
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (447)
.++++.. ..++.+.|++.+|+|..+.......+.. . ..++......+.. +
T Consensus 98 ~~~~~~~------~~~~gd~vlv~~P~y~~~~~~~~~~g~~-v------------~~v~~~~~~~~~~-----d------ 147 (374)
T PRK05839 98 NFPQFVL------FDKQNPTIAYPNPFYQIYEGAAIASRAK-V------------LLMPLTKENDFTP-----S------ 147 (374)
T ss_pred HHHHHHh------cCCCCCEEEECCCCchhhHHHHHhcCCE-E------------EEeecccccCCcC-----C------
Confidence 8877542 1123578889999998876555432221 1 1111110000000 0
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccccc-ccC---C--
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGC-DKY---S-- 263 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~-~~~---~-- 263 (447)
+.+ ..+ .+...+++++|.|++| ...+.+.+++|.++|++||+++|.||+|..+...+..... ... +
T Consensus 148 ~~~--~~~----~~~k~v~i~nP~NPTG--~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~ 219 (374)
T PRK05839 148 LNE--KEL----QEVDLVILNSPNNPTG--RTLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNE 219 (374)
T ss_pred cch--hhh----ccccEEEEeCCCCCcC--cccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCcc
Confidence 011 111 1233455666666665 4557899999999999999999999999877322221111 110 0
Q ss_pred CCCCee---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcH----HHH
Q 013204 264 IKPDLV---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNI----VEQ 336 (447)
Q Consensus 264 ~~~d~v---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~----~~~ 336 (447)
..+.++ +|||.++.+++|+|++++++++++.+... ....+++.+.+++.++.+++. .++. .+.
T Consensus 220 ~~~~vi~~~SfSK~~~~~GlRiG~ii~~~~~~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~ 289 (374)
T PRK05839 220 SFKNVLVINSISKRSSAPGLRSGFIAGDASILKKYKAY-------RTYLGCASPLPLQKAAAVAWL---DDEHAEFFRNI 289 (374)
T ss_pred ccCcEEEEeccccccCCccceeEEEecCHHHHHHHHHH-------HhhcCCCCChHHHHHHHHHhc---cchHHHHHHHH
Confidence 112333 58998766559999999999998887532 111233445556665555553 2222 233
Q ss_pred HHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHH-cCceEEee---------C
Q 013204 337 VNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEK-HGMLVRVS---------G 406 (447)
Q Consensus 337 ~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~---------g 406 (447)
++++.+.+.+.| +.. ....|.++.+.+.+ ...+.++|++ +||.+.++ .
T Consensus 290 ~~~~~~~~~~~l----~~~----~p~gg~fi~~~~~~--------------~~~~~~~l~~~~gi~v~pg~~f~~~~~~~ 347 (374)
T PRK05839 290 YAKNLKLAREIL----GIT----IPPATFYVWLPVDN--------------DEEFTKKLYQNEGIKVLPGSFLGRNGIGK 347 (374)
T ss_pred HHHHHHHHHHhc----CCC----CCCeeEEEEEeCCC--------------hHHHHHHHHHHCCEEEeCchhhCCCCCCC
Confidence 333333333222 111 23345666666542 2347777764 99999874 1
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 407 DNIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 407 ~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
+.+|++ +..+++++.+++++|.+.++
T Consensus 348 ~~iRis--~~~~~~~~~~~l~~l~~~l~ 373 (374)
T PRK05839 348 GYVRIA--LVYDTPKLEKALEIIKTYLE 373 (374)
T ss_pred CeEEEE--ecCCHHHHHHHHHHHHHHhh
Confidence 569999 45689999999999988764
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-19 Score=171.31 Aligned_cols=321 Identities=15% Similarity=0.160 Sum_probs=202.2
Q ss_pred EecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc--CCCCeE
Q 013204 21 KSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA--SKMAKV 98 (447)
Q Consensus 21 ~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~v 98 (447)
++.|.+-+..+|+..+|+..|- ++++ .+|.+++++.+.+...... ..+.....+|.+.+++++.. .+.++|
T Consensus 7 ~~~~~~~~~~~~~~~i~l~~~~--~~~~-~p~~~~~~~~~~~~~~~~~----~Y~~~~~~~Lr~aia~~~~~~~~~~~~i 79 (335)
T PRK14808 7 IAKRAYPYETEKRDRTYLALNE--NPFP-FPEDLVDEVFRRLNSDTLR----IYYDSPDEELIEKILSYLDTDFLSKNNV 79 (335)
T ss_pred hhccCcCCCCCCCceeEecCCC--CCCC-CCHHHHHHHHHHhhhhhhh----cCCCCChHHHHHHHHHHhCCCCCCcceE
Confidence 3455555656888999997764 5676 6889999998877532111 01222456777777777631 457899
Q ss_pred EEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCC
Q 013204 99 FFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHP 178 (447)
Q Consensus 99 ~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (447)
++++|+++++..+++.. +.|++.+|+|.+....+...+.... .++....+. .
T Consensus 80 ~it~Ga~~~i~~~~~~~------------d~v~v~~P~y~~~~~~~~~~g~~~~-------------~v~~~~~~~--~- 131 (335)
T PRK14808 80 SVGNGADEIIYVMMLMF------------DRSVFFPPTYSCYRIFAKAVGAKFL-------------EVPLTKDLR--I- 131 (335)
T ss_pred EEcCCHHHHHHHHHHHh------------CcEEECCCCHHHHHHHHHHcCCeEE-------------EecCCCcCC--C-
Confidence 99999999999988754 3589999999888665555433211 111111000 0
Q ss_pred CCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccc
Q 013204 179 GETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFG 258 (447)
Q Consensus 179 ~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~ 258 (447)
++. . + . .+...++.+|.|++|. ..+.+.+++| + ++++++|.||+|..|. +....
T Consensus 132 ------------~~~-~-~---~-~~~~i~i~nP~NPTG~--~~s~~~l~~l---~-~~~~~ii~DE~Y~~f~--~~~~~ 185 (335)
T PRK14808 132 ------------PEV-N-V---G-EGDVVFIPNPNNPTGH--VFEREEIERI---L-KTGAFVALDEAYYEFH--GESYV 185 (335)
T ss_pred ------------Chh-H-c---c-CCCEEEEeCCCCCCCC--CcCHHHHHHH---H-hcCCEEEEECchhhhc--CCchH
Confidence 101 0 1 1 2334566666676663 3455555554 4 4799999999999873 21111
Q ss_pred cccCCCCCCee---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh-hcHH
Q 013204 259 CDKYSIKPDLV---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE-RNIV 334 (447)
Q Consensus 259 ~~~~~~~~d~v---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-~~~~ 334 (447)
....-.+.++ +|||.++..++|+|++++++++++.+... . .+++.+.+++.++.++++..+. .+..
T Consensus 186 -~~~~~~~~vi~~~S~SK~~~l~GlRvG~~v~~~~~~~~l~~~-------~--~~~~~~~~~q~a~~~~l~~~~~~~~~~ 255 (335)
T PRK14808 186 -DLLKKYENLAVIRTFSKAFSLAAQRIGYVVSSEKFIDAYNRV-------R--LPFNVSYVSQMFAKVALDHREIFEERT 255 (335)
T ss_pred -HHHHhCCCEEEEEechhhccCcccceEEEEeCHHHHHHHHHh-------c--CCCCCCHHHHHHHHHHHhCHHHHHHHH
Confidence 1011112333 68999984339999999999999988632 1 2345566777777777753211 2223
Q ss_pred HHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeCCEEEEecC
Q 013204 335 EQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPP 414 (447)
Q Consensus 335 ~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g~~iR~~~~ 414 (447)
+.+.+..+.+.+.|+++ + .....+.|.++.+.+.... ...+.++|+++||.+....+.+|++
T Consensus 256 ~~~~~~r~~l~~~L~~~---g-~~~~~~~g~f~~~~l~~~~------------~~~~~~~l~~~Gi~V~~~~~~~Ris-- 317 (335)
T PRK14808 256 KFIVEERERMKSALREM---G-YRITDSRGNFVFIFMEKEE------------KERLLEHLRAKNIAVRSFREGVRIT-- 317 (335)
T ss_pred HHHHHHHHHHHHHHHHC---C-CEECCCCCeEEEEeCCCcc------------HHHHHHHHHHCCeEEEECCCCeEEe--
Confidence 44445555666666654 2 2233457888777765321 3457889999999999887789999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 013204 415 FIMSPEEVDELISKYGK 431 (447)
Q Consensus 415 ~~~t~e~i~~~~~~l~~ 431 (447)
..+.++.+++++.|++
T Consensus 318 -i~~~~~~~~~~~~l~~ 333 (335)
T PRK14808 318 -IGKREENDMILKELEV 333 (335)
T ss_pred -cCCHHHHHHHHHHHHh
Confidence 5678999999998875
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-19 Score=173.75 Aligned_cols=321 Identities=13% Similarity=0.017 Sum_probs=193.2
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC--cCCCCeEEEeCChhhHH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT--ASKMAKVFFTNSGSEAN 108 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~v~~~~sGseA~ 108 (447)
++..++||..+. +....+|.+.+++.+..... .++...+.......+++.+.+.+. +..++++++++|+++++
T Consensus 25 ~~~~~i~l~~~~---p~~~~~~~~~~~~~~~~~~~--~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i 99 (364)
T PRK07865 25 HPDGIVDLSVGT---PVDPVPPVIQEALAAAADAP--GYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELV 99 (364)
T ss_pred cCCCEEEcCCCC---CCCCCCHHHHHHHHHHHhhC--CCCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHH
Confidence 455688998773 33434688888887665432 222222334455566666655433 14578999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHH
Q 013204 109 DTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188 (447)
Q Consensus 109 ~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (447)
..++.++. . ..++.|++.+++|.+........+... +.++.
T Consensus 100 ~~~~~~l~------~-~~gd~Vl~~~p~y~~~~~~~~~~g~~~---------------~~~~~----------------- 140 (364)
T PRK07865 100 AWLPTLLG------L-GPGDVVVIPELAYPTYEVGARLAGATV---------------VRADS----------------- 140 (364)
T ss_pred HHHHHHHc------C-CCCCEEEECCCCcccHHHHHHhcCCEE---------------EecCC-----------------
Confidence 88766541 1 234789999999987754433222111 00100
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccc-ccc--CCCC
Q 013204 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFG-CDK--YSIK 265 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~-~~~--~~~~ 265 (447)
+++++. ..+.+|++++.++.+| ...+.+.+++|.++|++||+++|.||+|..+...+.... ... .+..
T Consensus 141 -~~~l~~-------~~~~~v~~~~p~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 211 (364)
T PRK07865 141 -LTELGP-------QRPALIWLNSPSNPTG-RVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGD 211 (364)
T ss_pred -hhhCCc-------ccceEEEEcCCCCCCC-ccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCc
Confidence 122221 2344555554445555 445778999999999999999999999997754442211 111 0111
Q ss_pred -CCee---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHHHHHHH
Q 013204 266 -PDLV---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVEQVNKI 340 (447)
Q Consensus 266 -~d~v---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~~~~~~ 340 (447)
..++ +|||.++..++++|++++++++++.+... .....++.+.+.+.++.++++..+ .++..+.++++
T Consensus 212 ~~~~i~~~S~SK~~~~~GlRiG~i~~~~~~~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 284 (364)
T PRK07865 212 HTGLLAVHSLSKQSNLAGYRAGFVAGDPALVAELLEV-------RKHAGMMVPAPVQAAMVAALGDDAHVREQRERYARR 284 (364)
T ss_pred cceEEEEeechhccCCCceeeEEEecCHHHHHHHHHH-------HHhcCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 2222 58999865448999999999998887632 111234556677776666664211 12234455555
Q ss_pred HHHHHHhHhhccCCCceeeEeeeee-EEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-------CCEEEEe
Q 013204 341 APKFQDGVKAFSDSPIIGEIRGTGL-ILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-------GDNIMMS 412 (447)
Q Consensus 341 ~~~l~~~L~~l~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------g~~iR~~ 412 (447)
.+.+.+.|++. ++ ....+.|. ++.+.+.. . ...+.+.|.++||.+.++ .+.+|++
T Consensus 285 ~~~l~~~L~~~---g~-~~~~~~~~~~~~~~~~~-~------------~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~ 347 (364)
T PRK07865 285 RAVLRPALEAA---GF-RVDHSEAGLYLWATRGE-D------------CWDTVAWLAERGILVAPGDFYGPAGAQHVRVA 347 (364)
T ss_pred HHHHHHHHHHc---CC-cccCCCccEEEEEeCCC-C------------HHHHHHHHHHCCEEEeCccccCcCCCCEEEEE
Confidence 66666666553 21 12233443 44454421 1 234678889999999864 2469999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 013204 413 PPFIMSPEEVDELISKYG 430 (447)
Q Consensus 413 ~~~~~t~e~i~~~~~~l~ 430 (447)
+..+++++++++++|+
T Consensus 348 --~~~~~~~~~~~~~~l~ 363 (364)
T PRK07865 348 --LTATDERIAAAVERLA 363 (364)
T ss_pred --ecCCHHHHHHHHHHhh
Confidence 5458999999999885
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.5e-19 Score=173.95 Aligned_cols=326 Identities=13% Similarity=0.127 Sum_probs=198.0
Q ss_pred CCCCCHHHHHHHHHHHhcCCcc-cc-cC---cCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHh
Q 013204 47 LGGSEPRLVAAATAQLNTLPFY-HS-FW---NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNA 121 (447)
Q Consensus 47 lG~~~p~v~~a~~~~~~~~~~~-~~-~~---~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~ 121 (447)
.|..+|.+.+++.+..+..... ++ .+ ....+...++.+.+++.+.....+++++++|+++|+..+++.+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~~--- 84 (373)
T cd06453 8 TSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGRA--- 84 (373)
T ss_pred ccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhhc---
Confidence 4567899999998887553221 11 10 0112334567778888874322568999999999999999876410
Q ss_pred cCCCCcceEEEEcCCCccchhh---hhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHH
Q 013204 122 LGRPNKKKFIARQKSYHGSTLI---AASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLIL 198 (447)
Q Consensus 122 ~~~~~~~~vi~~~~~yhg~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~ 198 (447)
..++++|++.++.|.+.... .....|.. +..++....+ ..+++++++.+.
T Consensus 85 --~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~-------------~~d~~~l~~~l~ 137 (373)
T cd06453 85 --NKPGDEIVTSVMEHHSNIVPWQQLAERTGAK------------LKVVPVDDDG-------------QLDLEALEKLLT 137 (373)
T ss_pred --CCCCCEEEECcchhHHHHHHHHHHHhhcCcE------------EEEeecCCCC-------------CcCHHHHHHHhc
Confidence 01346788777666553211 11111111 1112211100 011377777764
Q ss_pred hhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec--ccCC
Q 013204 199 KEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALS 276 (447)
Q Consensus 199 ~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l~ 276 (447)
+++++|++..+++..|.+.+ +++|.++|++||+++++|++++ +|... .......+|++++| |.++
T Consensus 138 ----~~~~~v~~~~~~~~tG~~~~----~~~i~~~~~~~~~~li~D~a~~-~~~~~----~~~~~~~~d~~~~s~~K~~~ 204 (373)
T cd06453 138 ----ERTKLVAVTHVSNVLGTINP----VKEIGEIAHEAGVPVLVDGAQS-AGHMP----VDVQDLGCDFLAFSGHKMLG 204 (373)
T ss_pred ----CCceEEEEeCcccccCCcCC----HHHHHHHHHHcCCEEEEEhhhh-cCcee----eeccccCCCEEEeccccccC
Confidence 25667777777777787766 8999999999999999999987 43321 12223457999888 9887
Q ss_pred CcccceeEEEeChhHHHHhhhccCCC---Cc-------c----CcCCCCCCcHHHHHHHHHHHHHHhhhc---HHHHHHH
Q 013204 277 SAYMPIGAILVSPEVSEVIHSQSNTL---GS-------F----SHGFTYSGHPVSCAVAIEALKIYKERN---IVEQVNK 339 (447)
Q Consensus 277 gg~~~~g~~~~~~~~~~~~~~~~~~~---~~-------~----~~~~t~~~~~~~~~aa~a~l~~~~~~~---~~~~~~~ 339 (447)
+ .++|++++++++++.+....... .. + ......+.+..++.+..++++.+.+.+ ..++.++
T Consensus 205 ~--~g~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~ 282 (373)
T cd06453 205 P--TGIGVLYGKEELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHE 282 (373)
T ss_pred C--CCcEEEEEchHHhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 6 57899999999887765311000 00 0 000011334445555566677666543 4556666
Q ss_pred HHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-------------C
Q 013204 340 IAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-------------G 406 (447)
Q Consensus 340 ~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------------g 406 (447)
+.+++++.|+++....++......+.++.+.+... ....+.++|.++||.+.++ .
T Consensus 283 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~ 350 (373)
T cd06453 283 LTAYALERLSEIPGVRVYGDAEDRAGVVSFNLEGI------------HPHDVATILDQYGIAVRAGHHCAQPLMRRLGVP 350 (373)
T ss_pred HHHHHHHHHhcCCCeEEeCCccccCCeEEEEECCc------------CHHHHHHHHHHCCEEeccCccchhHHHHHhCCC
Confidence 66777777766532222222222355556655321 1446888999999988642 2
Q ss_pred CEEEEecCCCCCHHHHHHHHHHH
Q 013204 407 DNIMMSPPFIMSPEEVDELISKY 429 (447)
Q Consensus 407 ~~iR~~~~~~~t~e~i~~~~~~l 429 (447)
+.+|++++..+|++|+|+++++|
T Consensus 351 ~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 351 GTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred CeEEEEecCCCCHHHHHHHHhhC
Confidence 56999999999999999999864
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-18 Score=168.90 Aligned_cols=319 Identities=14% Similarity=0.125 Sum_probs=195.4
Q ss_pred EEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHH
Q 013204 34 KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVK 113 (447)
Q Consensus 34 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~ 113 (447)
..+|+..|. +.++ .+|.+.+++.+.+...... ..+.....++.+.+++++ ...++++++++|+++++..+++
T Consensus 23 ~~~~l~~~~--~~~~-~p~~~~~a~~~~~~~~~~~----~y~~~~~~~lr~~ia~~~-~~~~~~i~it~G~~~~l~~~~~ 94 (351)
T PRK14807 23 YKYKMDANE--TPFE-LPEEVIKNIQEIVKSSQVN----IYPDPTAEKLREELARYC-SVVPTNIFVGNGSDEIIHLIML 94 (351)
T ss_pred ceeEccCCC--CCCC-CCHHHHHHHHHHhhcCccc----CCCCccHHHHHHHHHHHh-CCCcccEEEecCHHHHHHHHHH
Confidence 347776654 3555 6789999998877532111 112233567888888886 3466799999999999988888
Q ss_pred HHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHH
Q 013204 114 LVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNL 193 (447)
Q Consensus 114 ~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 193 (447)
... ..+++|++.+|+|..+....... |... ..++..+.+. .+++++
T Consensus 95 ~l~--------~~gd~Vlv~~p~y~~~~~~~~~~-g~~~------------~~v~~~~~~~-------------~d~~~l 140 (351)
T PRK14807 95 AFI--------NKGDVVIYPHPSFAMYSVYSKIA-GAVE------------IPVKLKEDYT-------------YDVGSF 140 (351)
T ss_pred Hhc--------CCCCEEEEeCCChHHHHHHHHHc-CCeE------------EEeecCCCCC-------------CCHHHH
Confidence 653 33578999999998654433322 2111 1111111000 013667
Q ss_pred HHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee---e
Q 013204 194 EDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV---S 270 (447)
Q Consensus 194 e~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v---~ 270 (447)
++.+.. .++++|++...++.+|...+ .+++.++|++++.++|+||+|.++. +.... ......+.++ +
T Consensus 141 ~~~~~~---~~~k~v~l~~p~NPtG~~~~----~~~l~~l~~~~~~~~ivDe~y~~~~--~~~~~-~~~~~~~~vi~~~S 210 (351)
T PRK14807 141 IKVIEK---YQPKLVFLCNPNNPTGSVIE----REDIIKIIEKSRGIVVVDEAYFEFY--GNTIV-DVINEFENLIVLRT 210 (351)
T ss_pred HHHhhc---cCCCEEEEeCCCCCCCCCCC----HHHHHHHHHhCCCEEEEeCcchhhc--ccchH-HHhhhCCCEEEEec
Confidence 666642 23444444444555565555 6777888888888999999998762 32111 1111113333 5
Q ss_pred ecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhh
Q 013204 271 FAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA 350 (447)
Q Consensus 271 ~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~ 350 (447)
|||.++-+++|+|++++++++++.+... . ..+..+.+++.++.+.++.-.-++..+.++++.+.+.+.|++
T Consensus 211 ~SK~~~~~GlRiG~~v~~~~~~~~~~~~-------~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l~~ 281 (351)
T PRK14807 211 LSKAFGLAGLRVGYAVANENILKYLNLV-------K--SPYNINSLSQVIALKVLRTGVLKERVNYILNERERLIKELSK 281 (351)
T ss_pred chHhcccchhceeeeecCHHHHHHHHHc-------c--CCCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999874339999999999999888632 1 124456777777777665311122334455555566666654
Q ss_pred ccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC------CEEEEecCCCCCHHHHHH
Q 013204 351 FSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG------DNIMMSPPFIMSPEEVDE 424 (447)
Q Consensus 351 l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g------~~iR~~~~~~~t~e~i~~ 424 (447)
+.+ +....+.|.++.+.+.+ ...+.+.|+++||.+.+++ +.+|++ ..+.++.++
T Consensus 282 ~~g---~~~~~~~~~~~~i~~~~--------------~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis---~~~~~~~~~ 341 (351)
T PRK14807 282 IPG---IKVYPSKTNFILVKFKD--------------ADYVYQGLLERGILVRDFSKVEGLEGALRIT---VSSCEANDY 341 (351)
T ss_pred CCC---cEECcCCccEEEEEcCC--------------HHHHHHHHHHCCEEEEECCCCCCCCCeEEEE---cCCHHHHHH
Confidence 422 22234456666666642 3457888999999997642 469999 346788899
Q ss_pred HHHHHHHHH
Q 013204 425 LISKYGKAL 433 (447)
Q Consensus 425 ~~~~l~~~l 433 (447)
+++.|++.+
T Consensus 342 l~~~l~~~~ 350 (351)
T PRK14807 342 LINGLKELL 350 (351)
T ss_pred HHHHHHHhh
Confidence 998887653
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-19 Score=173.55 Aligned_cols=319 Identities=15% Similarity=0.128 Sum_probs=195.6
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQ 111 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~A 111 (447)
+...+|+..|. +++| .+|.+.+++.+. .....+ +.....++.+.+++.+. .++++|++++|+++++..+
T Consensus 51 ~~~~i~l~~n~--~p~~-~~~~v~~a~~~~-~~~~~Y------p~~~~~~lr~~ia~~~~-~~~~~I~~t~Ga~~~i~~~ 119 (380)
T PLN03026 51 PEDIVKLDANE--NPYG-PPPEVLEALGNM-KFPYVY------PDPESRRLRAALAEDSG-LESENILVGCGADELIDLL 119 (380)
T ss_pred ccceEEccCCC--CCCC-CCHHHHHHHHhh-HhhccC------CCCCHHHHHHHHHHHhC-cChhhEEEcCCHHHHHHHH
Confidence 56889987764 5666 578888887642 111111 22335678888888873 5677899999999999998
Q ss_pred HHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHH
Q 013204 112 VKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191 (447)
Q Consensus 112 l~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (447)
++... ..+++|++.+|.|..+....... |... ..++....+. .+++
T Consensus 120 ~~~~~--------~~gd~Vlv~~P~y~~y~~~~~~~-g~~~------------~~v~~~~~~~-------------~d~~ 165 (380)
T PLN03026 120 MRCVL--------DPGDKIIDCPPTFGMYVFDAAVN-GAEV------------IKVPRTPDFS-------------LDVP 165 (380)
T ss_pred HHHhc--------CCCCEEEEcCCChHHHHHHHHHc-CCEE------------EEeecCCCCC-------------cCHH
Confidence 87653 23478999999997554333222 2111 0111110000 0136
Q ss_pred HHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee--
Q 013204 192 NLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV-- 269 (447)
Q Consensus 192 ~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v-- 269 (447)
++++.+.. .++++|++++.++.+|.+.+ .+++.++++.. +++|+||+|..|...+.. .....-.+.++
T Consensus 166 ~l~~~~~~---~~~~~v~l~~P~NPTG~~~~----~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~--~~~~~~~~~viv~ 235 (380)
T PLN03026 166 RIVEAVET---HKPKLLFLTSPNNPDGSIIS----DDDLLKILELP-ILVVLDEAYIEFSTQESR--MKWVKKYDNLIVL 235 (380)
T ss_pred HHHHHHhc---cCCcEEEEeCCCCCCCCCCC----HHHHHHHHhcC-CEEEEECcchhhcCCcch--HHHHHhCCCEEEE
Confidence 66666532 23445554455555565554 45555666543 899999999877432211 11111123333
Q ss_pred -eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHh
Q 013204 270 -SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVEQVNKIAPKFQDG 347 (447)
Q Consensus 270 -~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~~~~~~~~~l~~~ 347 (447)
+|||.++-.++|+|++++++++++.+... . ..+..+.+++.++.++|+..+ -++..+.++++++++.+.
T Consensus 236 ~SfSK~~glaGlRiGy~~~~~~~i~~l~~~-------~--~~~~~~~~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~ 306 (380)
T PLN03026 236 RTFSKRAGLAGLRVGYGAFPLSIIEYLWRA-------K--QPYNVSVAAEVAACAALSNPKYLEDVKNALVEERERLFGL 306 (380)
T ss_pred ecchHhhcCccccceeeecCHHHHHHHHHh-------c--CCCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 68998874449999999999998888632 1 134566777777777775211 123445566666677777
Q ss_pred HhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-----CEEEEecCCCCCHHHH
Q 013204 348 VKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-----DNIMMSPPFIMSPEEV 422 (447)
Q Consensus 348 L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-----~~iR~~~~~~~t~e~i 422 (447)
|+++ +.....+..|.++.+.+.... ....+.+.|+++||.+.++. +.+||+ ..+++++
T Consensus 307 L~~~---~~~~~~p~~~~f~~~~~~~~~-----------~~~~~~~~l~~~gI~v~~~~~~~~~~~lRis---~~~~~~~ 369 (380)
T PLN03026 307 LKEV---PFLEPYPSDANFILCRVTSGR-----------DAKKLKEDLAKMGVMVRHYNSKELKGYIRVS---VGKPEHT 369 (380)
T ss_pred HHHC---CCCeECCCCCeEEEEECCCCC-----------CHHHHHHHHHHCCeEEEECCCCCCCCEEEEe---cCCHHHH
Confidence 7665 222223445666666654211 13458888999999998752 569999 3478889
Q ss_pred HHHHHHHHH
Q 013204 423 DELISKYGK 431 (447)
Q Consensus 423 ~~~~~~l~~ 431 (447)
+++++.|++
T Consensus 370 ~~l~~al~~ 378 (380)
T PLN03026 370 DALMEALKQ 378 (380)
T ss_pred HHHHHHHHH
Confidence 999998875
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-19 Score=173.12 Aligned_cols=308 Identities=14% Similarity=0.126 Sum_probs=178.8
Q ss_pred hHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCC
Q 013204 77 KPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQK 156 (447)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 156 (447)
+...++.+.+++++ +.+.+.+++||++++..++.... .+++.|++..+.++... ......|....
T Consensus 51 ~~~~~~~e~lA~~~---g~~~~~i~~g~~~a~~~~~~~l~--------~~gd~Vl~~~~~h~s~~-~~~~~~g~~~~--- 115 (370)
T TIGR02539 51 PPIHDFLEDLAEFL---GMDEARVTHGAREGKFAVMHALC--------KEGDWVVLDGLAHYTSY-VAAERAGLNVK--- 115 (370)
T ss_pred hHHHHHHHHHHHHh---CCCceEEECChHHHHHHHHHHhh--------CCCCEEEECCcccHHHH-HHHHHcCCEEE---
Confidence 45677888888886 44568889999999999988664 23466666545544333 33332332211
Q ss_pred CCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhC---CCcEEEEEEccccCCCCCccCChhHHHHHHHH
Q 013204 157 FDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEG---PETIAAFIAEPVIGAGGVIPPPATYFEKVQAV 233 (447)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~---~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l 233 (447)
.++.... .....+++++++.+.... .+.+.+|+++.+++..|.+.+ +++|.++
T Consensus 116 ---------~~~~~~~-----------~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~----l~~i~~l 171 (370)
T TIGR02539 116 ---------EVPHTGH-----------PEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD----AGKVAKV 171 (370)
T ss_pred ---------EEecCCc-----------ccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC----HHHHHHH
Confidence 1111000 000012477777775311 124567777777777787776 9999999
Q ss_pred HHhcCCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCC-
Q 013204 234 VKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFT- 310 (447)
Q Consensus 234 ~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t- 310 (447)
|++||+++|+||+|+ +|..+... ....+|++ +++|+++++ .|+|++++++++++.+....... .+.....
T Consensus 172 a~~~~~~livDea~~-~g~~~~~~----~~~~~di~v~s~sK~~~~~-g~~G~l~~~~~~i~~l~~~~~~~-~~~~~~~~ 244 (370)
T TIGR02539 172 CREKGVPLLLNCAYT-VGRMPVSA----KEIGADFIVGSGHKSMAAS-GPCGVLGMSEEWEDIVLRKSRYS-PVKEVELL 244 (370)
T ss_pred HHHcCCeEEEECccc-cCCcCCCH----HHcCCCEEEeeCcccccCC-CCEEEEEECHHHHhhhcccccCC-ccceeeee
Confidence 999999999999998 44322111 11235765 578999876 58999999999998886432111 0000000
Q ss_pred -CCCcHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchH
Q 013204 311 -YSGHPVSCAVAIEALKIYKE-RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIG 388 (447)
Q Consensus 311 -~~~~~~~~~aa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~ 388 (447)
......++.++.++++...+ -+...+..++.+++++.|+++ +..++........++.+.++..... ...+....
T Consensus 245 ~~~~~~~~~~~~~~al~~~~~~l~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~s~t~~v~~~~~~~~~~---~~~~~~~~ 320 (370)
T TIGR02539 245 GCTSRGAPIVTMMASFPHVVERVKRWDEEVKKTRWFVAELEDI-GFIQLGQKPKEHDLVKFETPGFHEI---AQKHKRRG 320 (370)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CcEEEccCCCcCceEEEECCchhHH---hhhhcccc
Confidence 01111244455556653211 111222333456788888876 2222111233445555544311000 00000013
Q ss_pred HHHHHHHHHcCce-EEeeC-CEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 389 AYFGAQCEKHGML-VRVSG-DNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 389 ~~~~~~l~~~Gi~-~~~~g-~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
..+.++|+++||+ +++.. +.+|++.. .++++++++++++|++.+++
T Consensus 321 ~~~~~~L~e~GI~~ir~~~~~~iRis~~-~~t~e~i~~l~~~L~~~~~~ 368 (370)
T TIGR02539 321 YFLYEELKKRGIHGIRSGQTKYFKLSVY-GLTKEQVEYVVDSFEEIVEE 368 (370)
T ss_pred HHHHHHHHhCCCccccCCcceEEEEEec-CCCHHHHHHHHHHHHHHHHh
Confidence 4588999999997 65543 47999973 68999999999999988765
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-18 Score=170.24 Aligned_cols=340 Identities=12% Similarity=0.076 Sum_probs=201.5
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCC-cccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhHHH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP-FYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEAND 109 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA~~ 109 (447)
|..++||.++... +. .++.+.+++.+.+.... ..+....+..+....+++.+.+... ...++++++++|+++|+.
T Consensus 28 ~~~~i~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~ 104 (386)
T PRK07550 28 DGPLIDLSQAVPG--YP-PPPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFW 104 (386)
T ss_pred CCCeEEeCCCCCC--CC-CCHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHH
Confidence 5678999877532 22 36778888877664311 1122222334444555555554432 235679999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (447)
.++++.. ..++.|++.+|+|.+....... .|... ..++......+ . .+
T Consensus 105 ~~~~~l~--------~~gd~Vlv~~p~y~~~~~~~~~-~g~~~------------~~v~~~~~~~~-----~------~~ 152 (386)
T PRK07550 105 AAMVTLA--------GAGDEVILPLPWYFNHKMWLDM-LGIRP------------VYLPCDEGPGL-----L------PD 152 (386)
T ss_pred HHHHHhc--------CCCCEEEEcCCCCcchHHHHHh-cCCEE------------EEEecCCCcCC-----C------CC
Confidence 8888763 2357799999999776433322 12111 11111000000 0 01
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc-cc-ccccCCCCCC
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT-MF-GCDKYSIKPD 267 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~-~~-~~~~~~~~~d 267 (447)
.+++++.+.. +..+++++.|.|++| ...+.+.+++|.++|++||+++|.||+|.+|...+. .. .....+...+
T Consensus 153 ~~~l~~~~~~---~~~~v~~~~P~NPtG--~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~ 227 (386)
T PRK07550 153 PAAAEALITP---RTRAIALVTPNNPTG--VVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDT 227 (386)
T ss_pred HHHHHHHhcc---cCcEEEEeCCCCCCC--cccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCcccc
Confidence 3667776652 334556677766554 345788999999999999999999999987732211 11 1111111222
Q ss_pred e---eeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh--hcHHHHHHHHHH
Q 013204 268 L---VSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE--RNIVEQVNKIAP 342 (447)
Q Consensus 268 ~---v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~--~~~~~~~~~~~~ 342 (447)
+ .+|||.++.+++++|++++++++++.+... ....+.+.+.+++.++..+++.+.+ ++..+.++++.+
T Consensus 228 ~i~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~-------~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 300 (386)
T PRK07550 228 LVHLYSFSKSYALTGHRVGAVVASPARIAEIEKF-------MDTVAICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRD 300 (386)
T ss_pred EEEEecchhhccCcccceEeeecCHHHHHHHHHH-------HhhcccCCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3 368999973338999999999988877631 2223445566676666666653221 233455566666
Q ss_pred HHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEee-------CCEEEEecC
Q 013204 343 KFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVS-------GDNIMMSPP 414 (447)
Q Consensus 343 ~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------g~~iR~~~~ 414 (447)
.+.+.|+.... +......|.+..+.+..... ....+..+|+ ++||.+.++ .+.+|++..
T Consensus 301 ~l~~~L~~~~~---~~~~~~g~~~~~~~~~~~~~----------~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~ 367 (386)
T PRK07550 301 AFRAVFARLPG---WELLASGAYFAYVRHPFPDR----------PSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFA 367 (386)
T ss_pred HHHHHHHhCCC---ceeCCCceEEEEecCCCCCC----------CHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEee
Confidence 66666665411 11112234455555543111 1445777765 679999875 246999964
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 013204 415 FIMSPEEVDELISKYGKA 432 (447)
Q Consensus 415 ~~~t~e~i~~~~~~l~~~ 432 (447)
..+++++++++++|.+.
T Consensus 368 -~~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 368 -NADVAGIGELVERLRAF 384 (386)
T ss_pred -cCCHHHHHHHHHHHHhh
Confidence 25799999999998764
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-19 Score=174.71 Aligned_cols=321 Identities=16% Similarity=0.173 Sum_probs=195.3
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQ 111 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~A 111 (447)
++.++||..+. ++++ .+|.+.+++.+.+......+ +.....++.+.+++.+. .+++++++++|+++++..+
T Consensus 23 ~~~~i~l~~~~--~~~~-~~~~~~~a~~~~~~~~~~~y-----~~~~~~~lr~aia~~~~-~~~~~I~it~G~~~al~~~ 93 (353)
T PRK05387 23 LAKLIKLNTNE--NPYP-PSPKVLEAIRAALGDDLRLY-----PDPNADALRQAIAAYYG-LDPEQVFVGNGSDEVLAHA 93 (353)
T ss_pred ccceeeccCCC--CCCC-CCHHHHHHHHHHhhhhhhcC-----CCCcHHHHHHHHHHHhC-CCHHHEEEcCCHHHHHHHH
Confidence 45789998775 4455 47899999988775421111 22234678888888873 5678999999999999999
Q ss_pred HHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHH
Q 013204 112 VKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191 (447)
Q Consensus 112 l~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (447)
++.+. ..++.|++.+|.|..+....... |... ..++..+.+. . +++
T Consensus 94 ~~~l~--------~~gd~vlv~~P~y~~~~~~~~~~-g~~~------------~~v~~~~~~~-----~--------d~~ 139 (353)
T PRK05387 94 FLAFF--------NHDRPLLFPDITYSFYPVYAGLY-GIPY------------EEIPLDDDFS-----I--------DVE 139 (353)
T ss_pred HHHhc--------CCCCEEEEeCCCHHHHHHHHHHc-CCEE------------EEeecCCCCC-----C--------CHH
Confidence 98764 33578999999996554332221 2111 1111111110 0 023
Q ss_pred HHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCC-ee-
Q 013204 192 NLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPD-LV- 269 (447)
Q Consensus 192 ~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d-~v- 269 (447)
++++ ....++++.|.|++| .+ .+.+.+.+|.+.++ ++++|+||+|..|+.. .. .......+. ++
T Consensus 140 ~l~~-------~~~~v~~~~P~NPtG-~~-~~~~~~~~l~~~~~--~~~livDe~y~~~~~~--~~-~~~~~~~~~~i~~ 205 (353)
T PRK05387 140 DYLR-------PNGGIIFPNPNAPTG-IA-LPLAEIERILAANP--DSVVVIDEAYVDFGGE--SA-IPLIDRYPNLLVV 205 (353)
T ss_pred HHHh-------cCCEEEEeCCCCCCC-CC-CCHHHHHHHHHhCC--CcEEEEeCcccccCCc--ch-HHHHhhCCCEEEE
Confidence 3332 123456777766665 34 34455555554432 9999999999876421 11 111111122 33
Q ss_pred -eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHh
Q 013204 270 -SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVEQVNKIAPKFQDG 347 (447)
Q Consensus 270 -~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~~~~~~~~~l~~~ 347 (447)
+|||.++-.++++|++++++++++.+.... ....+++.+.+++.++.++++..+ -++..+++.++.+.+.+.
T Consensus 206 ~S~SK~~~~~GlR~G~~~~~~~~~~~l~~~~------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 279 (353)
T PRK05387 206 QTFSKSRSLAGLRVGFAIGHPELIEALNRVK------NSFNSYPLDRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEE 279 (353)
T ss_pred EehhHhhcchhhhceeeecCHHHHHHHHHhh------ccCCCCCcCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 589988743389999999999988876321 111245567778777777774211 123455566666677777
Q ss_pred HhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-----CEEEEecCCCCCHHHH
Q 013204 348 VKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-----DNIMMSPPFIMSPEEV 422 (447)
Q Consensus 348 L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-----~~iR~~~~~~~t~e~i 422 (447)
|+++ ++ ......|.++.+.+... ....+.++|+++||.+...+ +.+|++. .+++++
T Consensus 280 L~~~---g~-~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~gi~v~~~~~~~~~~~iRis~---~~~~~~ 340 (353)
T PRK05387 280 LEAL---GF-EVLPSKANFVFARHPSH------------DAAELAAKLRERGIIVRHFNKPRIDQFLRITI---GTDEEM 340 (353)
T ss_pred HHHC---CC-eECCCcCcEEEEECCCC------------CHHHHHHHHHHCCEEEEECCCCCCCCeEEEEe---CCHHHH
Confidence 7665 22 11233455555544321 14468888999999987553 4699993 378999
Q ss_pred HHHHHHHHHHHH
Q 013204 423 DELISKYGKALK 434 (447)
Q Consensus 423 ~~~~~~l~~~l~ 434 (447)
++++++|++++.
T Consensus 341 ~~~~~~L~~~~~ 352 (353)
T PRK05387 341 EALVDALKEILA 352 (353)
T ss_pred HHHHHHHHHHhh
Confidence 999999988754
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.3e-19 Score=168.49 Aligned_cols=283 Identities=12% Similarity=0.055 Sum_probs=178.5
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 154 (447)
+.+...+|.+.+++.+ ....++|++++|+++++..++++. .+ .++++.+|+|..+...+...+....
T Consensus 38 p~~~~~~lr~~ia~~~-~~~~~~I~it~Gs~~~l~~~~~~~---------~~-~~vv~~~P~y~~y~~~~~~~G~~v~-- 104 (332)
T PRK06425 38 PEISYTDIEDQIKIYT-QGLKIKVLIGPGLTHFIYRLLSYI---------NV-GNIIIVEPNFNEYKGYAFTHGIRIS-- 104 (332)
T ss_pred cCcCHHHHHHHHHHHh-CCCcceEEECCCHHHHHHHHHHHh---------CC-CcEEEeCCChHHHHHHHHHcCCeEE--
Confidence 4556788999999886 456788999999999999888642 22 3577779999888665554432211
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
.+++.. + .. +.+.++ .. +...+++++|.|++| ...+.+.+++|.++|
T Consensus 105 -----------~vp~~~-~-----~~--------~~~~l~----~~--~~k~v~l~nP~NPTG--~~~s~~~~~~l~~~a 151 (332)
T PRK06425 105 -----------ALPFNL-I-----NN--------NPEILN----NY--NFDLIFIVSPDNPLG--NLISRDSLLTISEIC 151 (332)
T ss_pred -----------EEeCCc-c-----cC--------cHHHHh----hc--CCCEEEEeCCCCCcC--CccCHHHHHHHHHHH
Confidence 111110 0 00 012222 11 233456667777666 456789999999999
Q ss_pred HhcCCEEEEehhhcCCCccccccccccCCCCCCee---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCC
Q 013204 235 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTY 311 (447)
Q Consensus 235 ~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 311 (447)
++||+++|.||+|..|...+.........-.+.++ +|||.++-+++|+|++++++++++.+... . .++
T Consensus 152 ~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~~~li~~l~~~-------~--~~~ 222 (332)
T PRK06425 152 RKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDDYNMKISRKI-------T--EPW 222 (332)
T ss_pred HHcCCEEEEecchhccccccchhHHHHhccCCCEEEEeecHHhcCCchhhheeeecCHHHHHHHHHc-------C--CCC
Confidence 99999999999999884333111111111123333 68998883338999999999999888631 1 123
Q ss_pred CCcHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHH
Q 013204 312 SGHPVSCAVAIEALKIYK-ERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAY 390 (447)
Q Consensus 312 ~~~~~~~~aa~a~l~~~~-~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~ 390 (447)
..+.+++.+ +.....-. .++..+.++++.+++.+.|+++ ++.....+.|.++.+.+.+ ...
T Consensus 223 ~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~---g~~~~~~~~g~f~~~~~~~--------------~~~ 284 (332)
T PRK06425 223 SVCDPAIDF-IRSIDLDYVAKHSLDIMENERSYLINNLEAM---GFRAAGDPSANFITFMIPD--------------AHD 284 (332)
T ss_pred ccCHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHC---CCEECCCCCceEEEEEcCC--------------HHH
Confidence 333333322 22211100 1234556666667777777665 2211113457777776541 345
Q ss_pred HHHHHHHcCceEEeeC-------CEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 391 FGAQCEKHGMLVRVSG-------DNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 391 ~~~~l~~~Gi~~~~~g-------~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
+.+.|+++||.+.++. +.+|++ ..++++.++++++|++.+
T Consensus 285 ~~~~l~~~gi~v~~~~~f~~~~~~~iRis---~~~~~~~~~l~~al~~~~ 331 (332)
T PRK06425 285 FYSYLLKNGILVRLLDDYECLGEQYIRIA---IRRRSFNIKLVNALRNFL 331 (332)
T ss_pred HHHHHHHCCeEEEECCCCCCCCCCEEEEE---eCCHHHHHHHHHHHHHHh
Confidence 8889999999998752 469999 568899999999998765
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-18 Score=170.51 Aligned_cols=337 Identities=12% Similarity=0.066 Sum_probs=200.4
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc---CCC-CeEEEeCChh
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA---SKM-AKVFFTNSGS 105 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~-~~v~~~~sGs 105 (447)
..|+.++||..|. ..++ .++.+.+++.+.+.....| ....+..+....+++.+.+.+.. .+. +++++++|++
T Consensus 25 ~~~~~~i~l~~~~--p~~~-~~~~~~~a~~~~~~~~~~Y-~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~ 100 (393)
T TIGR03538 25 PASKPPIALSIGE--PKHP-TPAFVLEALRENLHGLSTY-PTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTR 100 (393)
T ss_pred hcCCCeEEecCCC--CCCC-CCHHHHHHHHHHhhccCCC-CCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcH
Confidence 4688999998775 3444 4788999988876543222 22223344455555555544321 245 3799999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCc-ceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhH
Q 013204 106 EANDTQVKLVWYYNNALGRPNK-KKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEE 184 (447)
Q Consensus 106 eA~~~Al~~~~~~~~~~~~~~~-~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (447)
+|+..+++++. +++. ..|++.+|+|.+....+...+... ..+++.....+.
T Consensus 101 ~al~~~~~~l~-------~~gd~~~vlv~~P~y~~~~~~~~~~g~~~-------------~~v~~~~~~~~~-------- 152 (393)
T TIGR03538 101 EALFAFAQAVI-------NPGQAPLVVMPNPFYQIYEGAALLAGAEP-------------YFLNCTAENGFL-------- 152 (393)
T ss_pred HHHHHHHHHHc-------CCCCcceEEecCCCCcchHHHHHhcCCeE-------------EEeeccccCCCC--------
Confidence 99999998763 1333 248888999987754433322211 111110000000
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc-cc-c-c--
Q 013204 185 YSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT-MF-G-C-- 259 (447)
Q Consensus 185 ~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~-~~-~-~-- 259 (447)
.+++++++.+.. +..++++++|.|++| .+.+.+.+++|.++|++|++++|.||+|..+...+. .. . .
T Consensus 153 ---~d~~~l~~~~~~---~~k~i~l~~p~NPtG--~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~ 224 (393)
T TIGR03538 153 ---PDFDAVPESVWR---RCQLLFVCSPGNPTG--AVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQA 224 (393)
T ss_pred ---CCHHHHHHHHhh---cceEEEEeCCCCCcC--cccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHh
Confidence 013566665542 233455666666665 456889999999999999999999999987643321 11 1 1
Q ss_pred -ccCCC--CCCee---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhc
Q 013204 260 -DKYSI--KPDLV---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERN 332 (447)
Q Consensus 260 -~~~~~--~~d~v---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~ 332 (447)
...+. .+.++ +|||.++.+++++|++++++++++.+... ....+++.+++.+.++.+++..-+ -..
T Consensus 225 ~~~~~~~~~~~vi~i~S~SK~~~~~GlRvG~~i~~~~l~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~ 297 (393)
T TIGR03538 225 AAQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGDAEILKAFLRY-------RTYHGCAMPIPTQLASIAAWNDEQHVRE 297 (393)
T ss_pred cccccccccccEEEEecchhhcCCcccceEEEecCHHHHHHHHHH-------HHhhccCcCHHHHHHHHHHhcChHHHHH
Confidence 11111 12233 58998765559999999999998877531 111234556677777666663110 112
Q ss_pred HHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEeeC-----
Q 013204 333 IVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVSG----- 406 (447)
Q Consensus 333 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~g----- 406 (447)
..+.++++.+.+.+.|++. ..+ .....|.++.+.++. . ...+.+.++ ++||.+.++.
T Consensus 298 ~~~~~~~~~~~~~~~L~~~--~~~--~~p~gg~f~~~~~~~-~------------~~~~~~~l~~~~gV~v~pg~~f~~~ 360 (393)
T TIGR03538 298 NRALYREKFAAVLEILGQV--LDL--ELPDAGFYLWPKVPG-D------------DEAFARALYEEENVTVLPGRFLARE 360 (393)
T ss_pred HHHHHHHHHHHHHHHHHhh--Ccc--cCCCeeEEEEEECCC-C------------HHHHHHHHHHHCCEEEeCCcccccc
Confidence 2344455555555555543 111 123346667777651 1 234777765 5799986541
Q ss_pred --------CEEEEecCCCCCHHHHHHHHHHHHHH
Q 013204 407 --------DNIMMSPPFIMSPEEVDELISKYGKA 432 (447)
Q Consensus 407 --------~~iR~~~~~~~t~e~i~~~~~~l~~~ 432 (447)
+.+|++ +..+++++++++++|.+.
T Consensus 361 ~~~~~~~~~~~Ris--~~~~~~~l~~~l~~l~~~ 392 (393)
T TIGR03538 361 AEGVNPGEGRVRIA--LVAPLEECVEAAERIRSF 392 (393)
T ss_pred ccCCCCCCCEEEEE--ecCCHHHHHHHHHHHHHh
Confidence 469999 556899999999998764
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.6e-19 Score=173.50 Aligned_cols=335 Identities=18% Similarity=0.168 Sum_probs=200.7
Q ss_pred EEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccc-c--Cc-CCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHH
Q 013204 34 KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS-F--WN-RTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEAND 109 (447)
Q Consensus 34 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~--~~-~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~ 109 (447)
.|+|..+. |..++.+++++.+.........+ . .+ ...+...++.+.+++++. .+.++++|++|+++++.
T Consensus 2 ~yld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g-~~~~~i~~~~g~t~a~~ 74 (381)
T PRK02948 2 IYLDYAAT------TPMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIG-GEEQGIYFTSGGTESNY 74 (381)
T ss_pred EeccCCCC------CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEeCcHHHHHH
Confidence 47776443 45789999999988865321111 0 00 112345567778887763 45678999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhh---cccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAA---SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYS 186 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (447)
.++..+.... . .+++.|+ .+...|.+..... ...|... ..++....+
T Consensus 75 ~~~~~~~~~~---~-~~g~~vv-~~~~~h~s~~~~~~~~~~~g~~v------------~~v~~~~~~------------- 124 (381)
T PRK02948 75 LAIQSLLNAL---P-QNKKHII-TTPMEHASIHSYFQSLESQGYTV------------TEIPVDKSG------------- 124 (381)
T ss_pred HHHHHHHHhc---c-CCCCEEE-ECCcccHHHHHHHHHHHhCCCEE------------EEEeeCCCC-------------
Confidence 9988664210 0 1224444 4555555432221 1112111 111111100
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCC
Q 013204 187 TRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKP 266 (447)
Q Consensus 187 ~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~ 266 (447)
..+++++++.+. +.+.+|+++.+++++|.+.+ +++|.++|+++|+++++|++++ +|..+ ..... ...
T Consensus 125 ~~d~~~l~~~l~----~~~~lv~~~~~~n~tG~~~~----~~~I~~l~~~~~~~vivD~~~~-~g~~~--~~~~~--~~~ 191 (381)
T PRK02948 125 LIRLVDLERAIT----PDTVLASIQHANSEIGTIQP----IAEIGALLKKYNVLFHSDCVQT-FGKLP--IDVFE--MGI 191 (381)
T ss_pred CCCHHHHHHhcC----CCCEEEEEECCcCCcEeehh----HHHHHHHHHHcCCEEEEEChhh-ccccc--cCccc--CCC
Confidence 111366776654 24568888888888888877 8999999999999999999886 65432 22222 236
Q ss_pred Ceee--ecccCCCcccceeEEEeChhH-HHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh--hcHHHHHHHHH
Q 013204 267 DLVS--FAKALSSAYMPIGAILVSPEV-SEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE--RNIVEQVNKIA 341 (447)
Q Consensus 267 d~v~--~sK~l~gg~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~--~~~~~~~~~~~ 341 (447)
|+++ ++|.++ + .++|+++.++++ +..+.......+. ...++.+..+++++.++++.+.+ ++..++.++++
T Consensus 192 d~~~~s~~K~~g-p-~G~G~l~~~~~~~~~~~~~~~~~~~~---~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~ 266 (381)
T PRK02948 192 DSLSVSAHKIYG-P-KGVGAVYINPQVRWKPVFPGTTHEKG---FRPGTVNVPGIAAFLTAAENILKNMQEESLRFKELR 266 (381)
T ss_pred CEEEecHHhcCC-C-CcEEEEEEcCCCCCCCcccCCCCCCC---cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7664 569665 3 458898888775 1111110000111 12345677788888888876432 34567778888
Q ss_pred HHHHHhHhhccCCCceeeE-e--eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-------------
Q 013204 342 PKFQDGVKAFSDSPIIGEI-R--GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS------------- 405 (447)
Q Consensus 342 ~~l~~~L~~l~~~~~~~~~-~--~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------------- 405 (447)
+++++.|+++ ...+.... . ....++.+.+..- ....+...|.++||.++.+
T Consensus 267 ~~l~~~L~~~-~~~v~~~~~~~~~~~~i~~~~~~~~------------~~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~ 333 (381)
T PRK02948 267 SYFLEQIQTL-PLPIEVEGHSTSCLPHIIGVTIKGI------------EGQYTMLECNRRGIAISTGSACQVGKQEPSKT 333 (381)
T ss_pred HHHHHHHhcC-CCCEEEeCCCccCcCCEEEEEeCCC------------CHHHHHHhcccCCEEEEchHhcCCCCCCCCHH
Confidence 8888888776 22221110 0 0111222222210 1334666788899999842
Q ss_pred -----------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 406 -----------GDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 406 -----------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
++.+|+++...+|++|++++++.|+++++++
T Consensus 334 ~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 375 (381)
T PRK02948 334 MLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETIGNQF 375 (381)
T ss_pred HHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 2469999999999999999999999987654
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.7e-19 Score=170.68 Aligned_cols=320 Identities=14% Similarity=0.093 Sum_probs=196.7
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQ 111 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~A 111 (447)
++.++|+..+. ++++ .+|++.+++.+.+...... .++.....++.+.+++++.-...+++++++|+++++..+
T Consensus 25 ~~~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~----~Y~~~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~ 97 (356)
T PRK04870 25 ATGMVKLDAME--NPYR-LPAELRAELGERLAEVALN----RYPDPRAAALKAALRAAMGVPAGADVLLGNGSDELIQLL 97 (356)
T ss_pred CCCceeCcCCC--CCCC-CCHHHHHHHHHHhhccccc----cCCCCCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHH
Confidence 56788986664 5666 5889999999888642211 112223467888888887422224799999999999888
Q ss_pred HHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHH
Q 013204 112 VKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191 (447)
Q Consensus 112 l~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (447)
++++. ..++.|++.+|+|.++...+...+.... .++..+.+. .+++
T Consensus 98 ~~~~~--------~~gd~vlv~~P~y~~~~~~~~~~g~~~~-------------~i~~~~~~~-------------~d~~ 143 (356)
T PRK04870 98 ALACA--------KPGATVLAPEPGFVMYRMSAKLAGLEFV-------------GVPLTADFT-------------LDLP 143 (356)
T ss_pred HHHhc--------CCCCEEEECCCCHHHHHHHHHHcCCEEE-------------EecCCCCCC-------------CCHH
Confidence 88653 3357899999999876544333222111 111110000 0136
Q ss_pred HHHHHHHhhCCCcEEEE-EEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee-
Q 013204 192 NLEDLILKEGPETIAAF-IAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV- 269 (447)
Q Consensus 192 ~le~~l~~~~~~~~a~v-i~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v- 269 (447)
++++.+.. .++++| ++.|.|++ | ...+.+.+++|.++| ++++|+||+|..|.... +. ....-.+.++
T Consensus 144 ~l~~~~~~---~~~~~v~l~~p~NPt-G-~~~~~~~~~~i~~~~---~~~ii~De~y~~~~~~~--~~-~~~~~~~~vi~ 212 (356)
T PRK04870 144 AMLAAIAE---HRPALVFLAYPNNPT-G-NLFDDADVERIIEAA---PGLVVVDEAYQPFAGDS--WL-PRLARFPNLLV 212 (356)
T ss_pred HHHHHhhc---CCCCEEEEcCCCCCC-C-CCCCHHHHHHHHHHC---CCEEEEECCchhhcCcc--hH-HHHhhCCCEEE
Confidence 67776653 233444 44465554 4 344667777777777 78999999998774221 11 0011112332
Q ss_pred --eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHH
Q 013204 270 --SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVEQVNKIAPKFQD 346 (447)
Q Consensus 270 --~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~~~~~~~~~l~~ 346 (447)
+||| ++..++|+|++++++++++.+... . ..+..+.+++.++..+++..+ -++..+.++++.+.+.+
T Consensus 213 ~~S~SK-~~~~GlRiG~~i~~~~~i~~~~~~-------~--~~~~~~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ 282 (356)
T PRK04870 213 MRTVSK-LGLAGLRLGYLAGHPAWIAELDKV-------R--PPYNVNVLTQATALFALEHVDVLDAQAAQLRAERTRLAA 282 (356)
T ss_pred Eecchh-hhhHHHhhhhhhCCHHHHHHHHHc-------c--CCCcCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 5899 655448999999999998888632 1 234456677766666665221 12334555666666666
Q ss_pred hHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-------CEEEEecCCCCCH
Q 013204 347 GVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-------DNIMMSPPFIMSP 419 (447)
Q Consensus 347 ~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-------~~iR~~~~~~~t~ 419 (447)
.|+++.+ +......|.++.+.+.. ...+.+.|.++||.+.++. +.+|++ ..+.
T Consensus 283 ~L~~~~~---~~~~~~~~~~~~~~~~~--------------~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis---~~~~ 342 (356)
T PRK04870 283 ALAALPG---VTVFPSAANFILVRVPD--------------AAAVFDGLKTRGVLVKNLSGMHPLLANCLRVT---VGTP 342 (356)
T ss_pred HHHhCCC---cEECCCCCeEEEEECCC--------------HHHHHHHHHHCCEEEEECCCCCCCCCCeEEEe---CCCH
Confidence 6665522 22233455666665541 2357788999999998652 469999 3488
Q ss_pred HHHHHHHHHHHHHH
Q 013204 420 EEVDELISKYGKAL 433 (447)
Q Consensus 420 e~i~~~~~~l~~~l 433 (447)
+++++++++|++++
T Consensus 343 ~~~~~l~~al~~~~ 356 (356)
T PRK04870 343 EENAQFLAALKAAL 356 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998753
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-18 Score=170.86 Aligned_cols=357 Identities=13% Similarity=0.089 Sum_probs=199.2
Q ss_pred CCCEEEecCCccccccCCC-CCHHHHHHHHHHHhcCC-cccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhH
Q 013204 31 NGKKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLP-FYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEA 107 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA 107 (447)
.|+..+++..|.. ...+. .++.+.+++.+.+.+.. ..+....+..+....+++.+.+.+. ..++++|++++|+.+|
T Consensus 30 ~g~~~~~~~~G~p-~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~a 108 (433)
T PRK06855 30 LGVKITWENIGDP-IAKGEKIPDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDA 108 (433)
T ss_pred ccccccccccCCC-cccCCCCCHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHH
Confidence 3556677654421 11133 46677778877764421 1222223344445555555544322 2467799999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 108 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 108 ~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
+..++.++ ..++.|++.+|+|+++........+.... .++.... . .+ .
T Consensus 109 l~~~~~l~---------~~Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v------------~v~~~~~-------~---~~-~ 156 (433)
T PRK06855 109 IAKIYGLL---------RREARVIGPSPAYSTHSSAEAAHAGYPPV------------TYRLDPE-------N---NW-Y 156 (433)
T ss_pred HHHHHHhc---------CCCCeEEEeCCCCchHHHHHHHhcCCeEE------------EEecccc-------c---CC-C
Confidence 98887532 33578999999999865332221121110 0111000 0 00 0
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-cc-ccCCCC
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-GC-DKYSIK 265 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~~-~~~~~~ 265 (447)
.++++|++.+... ++..+++++.|.|++| ...+.+.+++|.++|++||+++|.||+|..+...+..+ .. ....-.
T Consensus 157 ~d~~~l~~~~~~~-~~~~~i~l~~P~NPTG--~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~ 233 (433)
T PRK06855 157 PDLDDLENKVKYN-PSIAGILLINPDNPTG--AVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDV 233 (433)
T ss_pred CCHHHHHHHHhcC-CCceEEEEECCCCCCC--cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcC
Confidence 0137788777531 2234567778877776 56788999999999999999999999999885444321 11 111101
Q ss_pred CCee--eecccCCCcccceeEEEeC-----h---hHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh----hh
Q 013204 266 PDLV--SFAKALSSAYMPIGAILVS-----P---EVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK----ER 331 (447)
Q Consensus 266 ~d~v--~~sK~l~gg~~~~g~~~~~-----~---~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~----~~ 331 (447)
..++ +|||.++.+++++|+++++ + .+++.+.. ... ...+.+.+++.++.++++.-. -+
T Consensus 234 ~~I~~~S~SK~~~~pGlRiG~ii~p~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~Q~a~~~~l~~~~~~~~~~ 305 (433)
T PRK06855 234 PGIALKGISKELPWPGSRCGWIEVYNADKDEVFKKYINSILN-------AKM-IEVCSTTLPQMAIPRIMSHPEYKNYLK 305 (433)
T ss_pred CeEEEecCccccCCCcceEEEEEEeCCchhhHHHHHHHHHHH-------hhc-cccCCChHHHHHHHHhhcCCcHHHHHH
Confidence 1122 5899997444999999972 2 23333321 011 123456677777766664211 01
Q ss_pred cHHHHHHHHHHHHHHhHhhccCCCceeeEeeee-eEEEEEeecCCC---CCCCCCC-C-c-----------chHHHHH-H
Q 013204 332 NIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTG-LILGTEFADNKS---PNEPFPP-E-W-----------GIGAYFG-A 393 (447)
Q Consensus 332 ~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g-~~~~i~~~~~~~---~~~~~~~-~-~-----------~~~~~~~-~ 393 (447)
+....++++.+.+.+.|+++ +......+.| .++++.++.... ....+.. + . .....+. .
T Consensus 306 ~~~~~~~~r~~~~~~~L~~~---~~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (433)
T PRK06855 306 ERNKRYEKRSNIAYEKLKDV---PGLKVNRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYY 382 (433)
T ss_pred HHHHHHHHHHHHHHHHHhcC---CCeeccCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHH
Confidence 23344455555555555443 2233334444 566676654210 0000000 0 0 0022344 4
Q ss_pred HHHHcCceEEeeC------CEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 394 QCEKHGMLVRVSG------DNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 394 ~l~~~Gi~~~~~g------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
.+.+.||.+.|+. +.+|++... .++++|++++++|.+.+++
T Consensus 383 l~~~~gV~v~PG~~F~~~~~~~Rls~~~-~~~~~i~~~~~~l~~~~~~ 429 (433)
T PRK06855 383 LLASTGICVVPLSSFCTELNGFRVTLLE-RDEEKFEWIYQTLAEKIEE 429 (433)
T ss_pred HHHHcCEEEecCCcCCCCCCceEEEECC-CcHHHHHHHHHHHHHHHHH
Confidence 4678899998762 359999432 5899999999999999865
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-19 Score=172.70 Aligned_cols=320 Identities=16% Similarity=0.175 Sum_probs=194.3
Q ss_pred EEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHH
Q 013204 34 KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVK 113 (447)
Q Consensus 34 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~ 113 (447)
.++|+..+. ..+| .+|.+.+++.+.+.....+ +.....++.+.+++++. .+++++++++|.++++..++.
T Consensus 23 ~~i~l~~~~--~~~~-~~~~~~~a~~~~~~~~~~y------~~~g~~~lr~~ia~~~~-~~~~~I~~~~G~~~~l~~~~~ 92 (352)
T PRK03321 23 GAIKLSSNE--TPFG-PLPSVRAAIARAAAGVNRY------PDMGAVELRAALAEHLG-VPPEHVAVGCGSVALCQQLVQ 92 (352)
T ss_pred cceeccCCC--CCCC-CCHHHHHHHHHHHHhcCcC------CCCcHHHHHHHHHHHhC-cCHHHEEECCCHHHHHHHHHH
Confidence 478887664 3455 4678999988876543222 23346678888888873 456789999888888887776
Q ss_pred HHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHH
Q 013204 114 LVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNL 193 (447)
Q Consensus 114 ~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 193 (447)
... .+++.|++..++|..+...... .|... ..++....+. .+++++
T Consensus 93 ~~~--------~~gd~Vli~~p~y~~~~~~~~~-~g~~~------------~~v~~~~~~~-------------~~~~~l 138 (352)
T PRK03321 93 ATA--------GPGDEVIFAWRSFEAYPILVQV-AGATP------------VQVPLTPDHT-------------HDLDAM 138 (352)
T ss_pred Hhc--------CCCCEEEeCCCCHHHHHHHHHH-cCCEE------------EEccCCCCCC-------------CCHHHH
Confidence 543 3347788888887544222211 12111 1111110000 013666
Q ss_pred HHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHh--cCCEEEEehhhcCCCccccc-cccccCCCCCCee-
Q 013204 194 EDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKK--YDILFIADEVICAFGRLGTM-FGCDKYSIKPDLV- 269 (447)
Q Consensus 194 e~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~--~g~~li~DEv~~g~g~~g~~-~~~~~~~~~~d~v- 269 (447)
++.+. + ++.+|+++..++.+|.+.+ .+++.++|+. +++++|+||+|.+|...+.. .........++++
T Consensus 139 ~~~~~---~-~~~~v~l~~p~NPtG~~~~----~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~ 210 (352)
T PRK03321 139 AAAIT---D-RTRLIFVCNPNNPTGTVVT----PAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVV 210 (352)
T ss_pred HHhhc---c-CCCEEEEeCCCCCcCCCcC----HHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEE
Confidence 66654 2 3344444444555565554 4455555554 69999999999877544321 1122222234555
Q ss_pred --eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHH
Q 013204 270 --SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE-RNIVEQVNKIAPKFQD 346 (447)
Q Consensus 270 --~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-~~~~~~~~~~~~~l~~ 346 (447)
+|||.++.+++|+|++++++++++.+... ..+++.+.+++.++.++++..+. .+..+.+.+..+.+.+
T Consensus 211 ~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~---------~~~~~~s~~~q~~a~~~l~~~~~~~~~~~~~~~~r~~~~~ 281 (352)
T PRK03321 211 LRTFSKAYGLAGLRVGYAVGHPEVIAALRKV---------AVPFSVNSLAQAAAIASLAAEDELLERVDAVVAERDRVRA 281 (352)
T ss_pred EecchHHhhhHHHhhhhhcCCHHHHHHHHHh---------cCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 58999984338999999999999988631 13566788888888777752111 1112223333344555
Q ss_pred hHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEEEecCCCCCHHHHHHH
Q 013204 347 GVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIMMSPPFIMSPEEVDEL 425 (447)
Q Consensus 347 ~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR~~~~~~~t~e~i~~~ 425 (447)
.|++. +.. .....|.++.+.+... ...+.+.|.++||.+.+.+ +.+|++ ..+.++++++
T Consensus 282 ~L~~~---~~~-~~~~~g~~i~i~l~~~-------------~~~~~~~l~~~gI~v~~~~~~~iRi~---~~~~~~~~~~ 341 (352)
T PRK03321 282 ALRAA---GWT-VPPSQANFVWLPLGER-------------TADFAAAAAEAGVVVRPFAGEGVRVT---IGAPEENDAF 341 (352)
T ss_pred HHHHC---CCc-cCCCCCCEEEEeCCCC-------------HHHHHHHHHHCCEEEEccCCCcEEEe---eCCHHHHHHH
Confidence 55543 221 1233467766665321 3458888999999999875 469999 4799999999
Q ss_pred HHHHHHHHH
Q 013204 426 ISKYGKALK 434 (447)
Q Consensus 426 ~~~l~~~l~ 434 (447)
+++|++++.
T Consensus 342 ~~al~~~~~ 350 (352)
T PRK03321 342 LRAARAWRA 350 (352)
T ss_pred HHHHHHHhc
Confidence 999988754
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-18 Score=168.56 Aligned_cols=321 Identities=15% Similarity=0.124 Sum_probs=189.3
Q ss_pred CCHHHHHHHHHHH-hcCCc---ccccCcCCChHHHHHHH----HHHHhcCcCCCCeEE-EeCChhhHHHHHHHHHHHHHH
Q 013204 50 SEPRLVAAATAQL-NTLPF---YHSFWNRTTKPSLDLAK----ELLEMFTASKMAKVF-FTNSGSEANDTQVKLVWYYNN 120 (447)
Q Consensus 50 ~~p~v~~a~~~~~-~~~~~---~~~~~~~~~~~~~~l~~----~l~~~~~~~~~~~v~-~~~sGseA~~~Al~~~~~~~~ 120 (447)
-||.+++++...+ .++.. +++..++ ++...++++ ++++++ +.+.++ +++||+.||..++....
T Consensus 40 ~~p~v~~a~~~~~~~~~~~g~~gsr~~~G-~~~~~~lE~~~~~~la~l~---g~~~alv~~~SG~~A~~~~l~al~---- 111 (416)
T PRK13034 40 TSPAVMEAQGSVLTNKYAEGYPGKRYYGG-CEFVDEVEALAIERAKQLF---GCDYANVQPHSGSQANGAVYLALL---- 111 (416)
T ss_pred CCHHHHHHhcchhhcCCCCCCCCCcccCC-ChHHHHHHHHHHHHHHHHh---CCCceEEecCCcHHHHHHHHHHhc----
Confidence 4899999999995 55433 2334344 577888888 888887 344664 56899999999998763
Q ss_pred hcCCCCcceEEEEcCCCccchhhhhccc-CCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHh
Q 013204 121 ALGRPNKKKFIARQKSYHGSTLIAASLS-GLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILK 199 (447)
Q Consensus 121 ~~~~~~~~~vi~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~ 199 (447)
.+++.|++...++.+........+ ....+. ....+... . ....+++++++.+..
T Consensus 112 ----~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~---------~~~~~~~~------~------~~~~d~~~le~~l~~ 166 (416)
T PRK13034 112 ----KPGDTILGMSLSHGGHLTHGAKVSLSGKWYN---------AVQYGVDR------L------TGLIDYDEVEELAKE 166 (416)
T ss_pred ----CCCCEEEEcCccceeeeecCCcceeccceee---------eEEccccc------c------cCCcCHHHHHHHHhh
Confidence 345677776655544221111100 000000 00000000 0 001124777777754
Q ss_pred hCCCcEEEEEE-ccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCC
Q 013204 200 EGPETIAAFIA-EPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALS 276 (447)
Q Consensus 200 ~~~~~~a~vi~-epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~ 276 (447)
. ++++|++ ++++++ ..+ +++|.++|++||++||+|++|+ +|..+.+......+ ..|+++ ++|.++
T Consensus 167 ~---~~klVi~~~~~~g~---~~d----l~~l~~la~~~g~~livD~Aha-~G~~~~g~~~~~~~-~~Di~~~s~~K~l~ 234 (416)
T PRK13034 167 H---KPKLIIAGFSAYPR---ELD----FARFREIADEVGALLMVDMAHI-AGLVAAGEHPNPFP-HAHVVTTTTHKTLR 234 (416)
T ss_pred c---CCeEEEECCCcccc---ccC----HHHHHHHHHHcCCEEEEeCccc-ccCcccCCCCCCCC-CceEEEEeCcccCC
Confidence 2 2456666 555543 333 8999999999999999999997 66555322111111 367664 579997
Q ss_pred CcccceeEEEeChh-HHHHhhhccCCCCccCcCCCCCCcHHHHH-HHHHHHHHHhh--hcHHHHHHHHHHHHHHhHhhcc
Q 013204 277 SAYMPIGAILVSPE-VSEVIHSQSNTLGSFSHGFTYSGHPVSCA-VAIEALKIYKE--RNIVEQVNKIAPKFQDGVKAFS 352 (447)
Q Consensus 277 gg~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~-aa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~ 352 (447)
|+ ..|+++++++ +.+.++. ....+.+....+...+ ++.+.++.+.. +++.+++.++.++|++.|+++
T Consensus 235 g~--~GG~v~~~~~~~~~~~~~------~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~- 305 (416)
T PRK13034 235 GP--RGGMILTNDEEIAKKINS------AVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKER- 305 (416)
T ss_pred CC--CCeEEEECcHHHHHHHHh------hcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHc-
Confidence 64 2366666554 4444432 1111111122233333 33444444422 345788999999999999876
Q ss_pred CCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-----------CCEEEEecCC----CC
Q 013204 353 DSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-----------GDNIMMSPPF----IM 417 (447)
Q Consensus 353 ~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----------g~~iR~~~~~----~~ 417 (447)
+.++... .....+..+.+.+.... ...+.++|.+.||++... ...+|++++. .+
T Consensus 306 G~~~~~~-~~~t~i~~v~~~~~~~~----------~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~ 374 (416)
T PRK13034 306 GYDLVSG-GTDNHLLLVDLRPKGLS----------GKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGF 374 (416)
T ss_pred CCEeccC-CCCCcEEEEEcCCCCCC----------HHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCC
Confidence 3333211 12344555666543211 334667888899999741 2469999888 78
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 013204 418 SPEEVDELISKYGKALKA 435 (447)
Q Consensus 418 t~e~i~~~~~~l~~~l~~ 435 (447)
+++||+++++.|++++.+
T Consensus 375 ~~~di~~l~~~l~~~~~~ 392 (416)
T PRK13034 375 GEAEFREIANWILDVLDD 392 (416)
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 899999999999988864
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-18 Score=169.12 Aligned_cols=340 Identities=17% Similarity=0.210 Sum_probs=195.7
Q ss_pred EEecCCccccccCCCCCHHHHHHHHHHHhcCCcc-cccCcCCChHHHHHHHHHHHhc---CcCCCCeEEEeCChhhHHHH
Q 013204 35 YLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY-HSFWNRTTKPSLDLAKELLEMF---TASKMAKVFFTNSGSEANDT 110 (447)
Q Consensus 35 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~---~~~~~~~v~~~~sGseA~~~ 110 (447)
|+|..++. ..++.|++++.+...+.... ++...........+.+.+.+.. ...++++++|++|+++++..
T Consensus 2 yld~aa~~------~~~~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~ 75 (382)
T TIGR03403 2 YLDNNATT------MLDPKVKELMDPFFCDIYGNPNSLHQFGTATHPAIAEALDKLYKGINARDLDDIIITSCATESNNW 75 (382)
T ss_pred cccCcCCC------CCCHHHHHHHHHHHHhcCcCCccccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHH
Confidence 67765552 36789999999988753221 1111111222334444433333 21256799999999999999
Q ss_pred HHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh--hcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHH
Q 013204 111 QVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA--ASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188 (447)
Q Consensus 111 Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (447)
+++.+..... .++++++|++....|+...... +...|.. +..++.++.+. .
T Consensus 76 ~~~~~~~~~~--~~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~------------v~~v~~~~~g~-------------~ 128 (382)
T TIGR03403 76 VLKGVYFDEI--LKGGKNHIITTEVEHPAVRATCAFLESLGVE------------VTYLPINEQGT-------------I 128 (382)
T ss_pred HHHHHHHhhc--ccCCCCEEEEcCCccHHHHHHHHHHHHCCCE------------EEEEecCCCCC-------------C
Confidence 9886521000 0123355666554443332211 1111111 11122211100 0
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCe
Q 013204 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDL 268 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~ 268 (447)
+++++++.+. +++++|++..+++.+|.+.+ +++|.++|++||+++++|++|. +|.. . .+.....+|+
T Consensus 129 d~~~l~~~i~----~~t~lv~~~~~~n~tG~~~~----~~~I~~la~~~g~~~ivD~a~~-~g~~--~--~~~~~~~~D~ 195 (382)
T TIGR03403 129 TAEQVREAIT----EKTALVSVMWANNETGMIFP----IKEIGEICKERGVLFHTDAVQA-IGKI--P--VDVQKAGVDF 195 (382)
T ss_pred CHHHHHHhcc----cCCeEEEEEcccCCCccccC----HHHHHHHHHHcCCEEEEechhh-cCCC--c--cCccccCCCE
Confidence 1366666664 24567778777778888877 8999999999999999999987 4322 1 2222345788
Q ss_pred eeec--ccCCCcccceeEEEeChhHH--HHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh--hcHHHHHHHHHH
Q 013204 269 VSFA--KALSSAYMPIGAILVSPEVS--EVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE--RNIVEQVNKIAP 342 (447)
Q Consensus 269 v~~s--K~l~gg~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~--~~~~~~~~~~~~ 342 (447)
+++| |.+ |+ .++|+++.+++.. ..+.. ...... ....+.+..++.++.++++...+ +...++.+.+.+
T Consensus 196 ~~~s~~K~~-gp-~G~g~l~vr~~~~~~p~~~g-~~~~~~---~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~ 269 (382)
T TIGR03403 196 LSFSAHKFH-GP-KGVGGLYIRKGVELTPLFHG-GEHMGG---RRSGTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRD 269 (382)
T ss_pred EEEcchhhC-CC-CceEEEEECCCCCCCCcccC-CCCCCC---cccCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 8887 953 43 4578888776531 11100 000001 12345666777666777765543 233466666777
Q ss_pred HHHHhHhhccCCCceeeEe-eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee----------------
Q 013204 343 KFQDGVKAFSDSPIIGEIR-GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS---------------- 405 (447)
Q Consensus 343 ~l~~~L~~l~~~~~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---------------- 405 (447)
++++.|+++....+..... ....++.+.+.... ...+.+.|.++||.++.+
T Consensus 270 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~ 337 (382)
T TIGR03403 270 RLEDALLELPDVFVVGDREHRVPNTILISIKGVE------------GEAMLWDLNKAGIAASTGSACASEDLEANPVMVA 337 (382)
T ss_pred HHHHHHhcCCCEEEECCCCCCcCCEEEEEeCCCC------------HHHHHHhhccCCEEEEchhccCCCCCCcCHHHHH
Confidence 7777776653222221110 11234444443211 345667788999999842
Q ss_pred --------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 406 --------GDNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 406 --------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
++.||++++..+|++|||+++++|++++++++.
T Consensus 338 ~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~~~~~ 378 (382)
T TIGR03403 338 IGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQRLRA 378 (382)
T ss_pred cCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 145999999999999999999999998887653
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.4e-19 Score=171.99 Aligned_cols=334 Identities=15% Similarity=0.166 Sum_probs=197.6
Q ss_pred EEEecCCccccccCCCCCHHHHHHHHHHHh---cCCcccccCcCCChHHHHHHHHHHHhcC-----cCCCC-eEEEeCCh
Q 013204 34 KYLDSLAGLWCTALGGSEPRLVAAATAQLN---TLPFYHSFWNRTTKPSLDLAKELLEMFT-----ASKMA-KVFFTNSG 104 (447)
Q Consensus 34 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~-~v~~~~sG 104 (447)
+.|||.++. ..++++||.+.+++.+..+ ..... ....+.....++.+.+++++. ....+ .+++++|.
T Consensus 2 ~~I~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~ 77 (363)
T PF00155_consen 2 DVINLGSNA--PLLLSQNPPPPAAIKAAIRGAATSSSF--LGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGA 77 (363)
T ss_dssp TEEESSSSS--TSSTTSSHHHHHHHHHHHHHHHHHTGC--TSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHH
T ss_pred CEEEEECCC--CCCcccccchHHHHHHHHHHhhccccc--ccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEeccc
Confidence 468887774 3344456655555444433 11100 112244456778888887764 13456 67777655
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhH
Q 013204 105 SEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEE 184 (447)
Q Consensus 105 seA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (447)
.+++..++.+.. . .+++.|++.+|.|.+........ |.....-.+ +..+.+
T Consensus 78 ~~~~~~~~~~~~------~-~~~~~vlv~~P~y~~~~~~~~~~-g~~~~~~~~----------~~~~~~----------- 128 (363)
T PF00155_consen 78 QAALFLLLRLLK------I-NPGDTVLVPDPCYPSYIEAARLL-GAEVIPVPL----------DSENDF----------- 128 (363)
T ss_dssp HHHHHHHHHHHH------S-STTSEEEEEESSSTHHHHHHHHT-TSEEEEEEE----------EETTTT-----------
T ss_pred ccchhhhhhccc------c-cccccceecCCcccccccccccc-Cceeeeccc----------cccccc-----------
Confidence 555555555442 1 34578999999998875444432 222111000 000000
Q ss_pred HHHHHHHHHHHHHHhhCCC--cEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccc--cc
Q 013204 185 YSTRLANNLEDLILKEGPE--TIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFG--CD 260 (447)
Q Consensus 185 ~~~~~~~~le~~l~~~~~~--~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~--~~ 260 (447)
+.++++|++.+.+..++ ++.+|+++..++.+| ...+.+.+++|.++|++||+++|+||+|.++......+. ..
T Consensus 129 --~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG-~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~ 205 (363)
T PF00155_consen 129 --HLDPEALEEALDELPSKGPRPKAVLICNPNNPTG-SVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRS 205 (363)
T ss_dssp --EETHHHHHHHHHTSHTTTETEEEEEEESSBTTTT-BB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHG
T ss_pred --cccccccccccccccccccccceeeecccccccc-cccccccccchhhhhcccccceeeeeceeccccCCCccCcccc
Confidence 11147888888764333 245666666666666 456889999999999999999999999997633322111 11
Q ss_pred cCCCCCCee---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-----hhc
Q 013204 261 KYSIKPDLV---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-----ERN 332 (447)
Q Consensus 261 ~~~~~~d~v---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-----~~~ 332 (447)
...-.++++ ++||.++..++++|++++++++++.+... .. ++..+.+.+.++.+.+.... -++
T Consensus 206 ~~~~~~~vi~~~S~SK~~g~~GlRvG~i~~~~~~~~~l~~~-------~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 276 (363)
T PF00155_consen 206 LLDEDDNVIVVGSLSKSFGLPGLRVGYIVAPPELIERLRRF-------QR--SGLSSSPMQAAAAAALSDPELVEKWLEE 276 (363)
T ss_dssp HHTTTSTEEEEEESTTTTTSGGGTEEEEEEEHHHHHHHHHH-------HH--HTTSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccceeeeeccccccccccccccccchhhhhhhhhhc-------cc--cccccchhhHHHHHhhhccccccccccc
Confidence 112223333 57899986559999999999998888642 11 22224455554444444222 133
Q ss_pred HHHHHHHHHHHHHHhHhhccCCCceeeEee-eeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc-CceEEeeC----
Q 013204 333 IVEQVNKIAPKFQDGVKAFSDSPIIGEIRG-TGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH-GMLVRVSG---- 406 (447)
Q Consensus 333 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~g---- 406 (447)
..+.++++.+++.+.|++. +.. ...+ .|.+..+.+... ....+.++|+++ ||.+.++.
T Consensus 277 ~~~~l~~~~~~l~~~L~~~---~~~-~~~~~~~~~~~~~~~~~------------~~~~l~~~L~~~~gi~v~pg~~~~~ 340 (363)
T PF00155_consen 277 LRERLRENRDLLREALEEI---GIT-VLPPEAGFFLWVRLDPN------------DAEELAQELLEEYGILVRPGSYFGV 340 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHT---TSE-EEHHSBSSEEEEEESHH------------HHHHHHHHHHHHHTEEEEEGGGGTS
T ss_pred chhhHHHHHHHHHHHHHHh---hhh-eeeccCccEEEEEcccc------------hHHHHHHHHHHhCCEEEEecCCCCC
Confidence 5566677777777777665 222 2222 344555555432 145688889988 99999853
Q ss_pred -CEEEEecCCCCCHHHHHHHHHHH
Q 013204 407 -DNIMMSPPFIMSPEEVDELISKY 429 (447)
Q Consensus 407 -~~iR~~~~~~~t~e~i~~~~~~l 429 (447)
+.+|++. ..++++++++++++|
T Consensus 341 ~~~iRi~~-a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 341 PGYIRISL-ASHSEEDLEEALERL 363 (363)
T ss_dssp TTEEEEEG-GCSCHHHHHHHHHHH
T ss_pred CCEEEEEe-ccCCHHHHHHHHhhC
Confidence 5799996 489999999999986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-18 Score=168.41 Aligned_cols=344 Identities=10% Similarity=0.036 Sum_probs=194.1
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCC-----cccccCcCCChHHHHHHHHHHHhc----C-cCCCCeEEEe
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP-----FYHSFWNRTTKPSLDLAKELLEMF----T-ASKMAKVFFT 101 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~----~-~~~~~~v~~~ 101 (447)
+..++|+..+. ..++ .+|.+.+++.+.+.... ..+. +.....+|.+.+++++ . ...+++|+++
T Consensus 33 ~~~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Y~----~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it 105 (409)
T PRK07590 33 EAKIIRLGIGD--VTQP-LPPAVIEAMHKAVDEMGTAETFRGYG----PEQGYDFLREKIAENDYQARGCDISADEIFIS 105 (409)
T ss_pred CCceEEecCcC--CCCC-CCHHHHHHHHHHHhcccccCCccCCC----CCCCCHHHHHHHHHHHHHhcCCcCChhhEEEC
Confidence 56789987764 3344 57888999988876521 1111 2222334444444442 1 3567899999
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCC
Q 013204 102 NSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGET 181 (447)
Q Consensus 102 ~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (447)
+|+.+++...+.++ .++++|++.+|+|.+........+.... ....+. ...+..++......
T Consensus 106 ~Ga~~al~~l~~~~---------~~gd~V~v~~P~Y~~~~~~~~~~g~~~~-~~~~~~-~~~~~~v~~~~~~~------- 167 (409)
T PRK07590 106 DGAKCDTGNILDIF---------GPDNTIAVTDPVYPVYVDTNVMAGRTGE-ANEDGR-YSGIVYLPCTAENN------- 167 (409)
T ss_pred CCHHHHHHHHHHhc---------CCCCEEEEeCCCCcchHHHHHHcCCccc-cccccc-ccceeEeecccccC-------
Confidence 99999988754322 2347899999999987654443332100 000000 00011122110000
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccc-ccc-
Q 013204 182 EEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTM-FGC- 259 (447)
Q Consensus 182 ~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~-~~~- 259 (447)
+ ..++++ ++..+++++.|.|++| ...+.+.+++|.++|++|++++|.||+|..|-..+.. ...
T Consensus 168 ---~----~~d~~~------~~~k~i~l~nP~NPTG--~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~ 232 (409)
T PRK07590 168 ---F----VPELPE------EKVDIIYLCFPNNPTG--TVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIY 232 (409)
T ss_pred ---C----cccCcc------cCceEEEEeCCCCCcC--CcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchh
Confidence 0 011111 1233455566766665 5668899999999999999999999999977433321 111
Q ss_pred ccCCCCCCee---eecccCCCcccceeEEEeChhHHHHhhhccC----CCCccCcCCCC-CCcHHHHHHHHHHHHH-H--
Q 013204 260 DKYSIKPDLV---SFAKALSSAYMPIGAILVSPEVSEVIHSQSN----TLGSFSHGFTY-SGHPVSCAVAIEALKI-Y-- 328 (447)
Q Consensus 260 ~~~~~~~d~v---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~t~-~~~~~~~~aa~a~l~~-~-- 328 (447)
...+....++ +|||.++.+++++|++++++++++.+..... .........++ +.+.+++.++.++++. .
T Consensus 233 ~~~~~~~~vi~~~SfSK~~~~pGlRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~ 312 (409)
T PRK07590 233 EIEGARECAIEFRSFSKTAGFTGTRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEGKA 312 (409)
T ss_pred hCCCcccceEEEecCccccCCcCceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCcHH
Confidence 1111111223 6899997444999999999998863210000 00000011122 3456677666666541 0
Q ss_pred hhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEeeC
Q 013204 329 KERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVSG 406 (447)
Q Consensus 329 ~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~g 406 (447)
.-++..+.++++.+.+.+.|++. + +....+. |.++++.+.... ....+...++ +.||++.++.
T Consensus 313 ~~~~~~~~~~~~r~~l~~~L~~~---~-~~~~~~~g~~f~wi~~~~~~-----------~~~~~~~~l~~~~gv~v~pg~ 377 (409)
T PRK07590 313 QIKELIDYYMENAKIIREGLESA---G-FEVYGGVNAPYIWVKTPDGM-----------SSWDFFDKLLQEANVVGTPGS 377 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc---C-CceecCCcceEEEEECCCCC-----------CHHHHHHHHHHHCCEEEeChh
Confidence 01233455566666666666654 2 1223333 456677765421 1334666666 5699988752
Q ss_pred -------CEEEEecCCCCCHHHHHHHHHHHHHH
Q 013204 407 -------DNIMMSPPFIMSPEEVDELISKYGKA 432 (447)
Q Consensus 407 -------~~iR~~~~~~~t~e~i~~~~~~l~~~ 432 (447)
+.+|++ +..+++++++++++|.++
T Consensus 378 ~f~~~~~~~iRi~--~~~~~~~l~~~l~rl~~~ 408 (409)
T PRK07590 378 GFGPSGEGYFRLS--AFGSRENVLEAMERIKKA 408 (409)
T ss_pred HhCCCCCCEEEEE--ccCCHHHHHHHHHHHHhh
Confidence 469999 567899999999999775
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-18 Score=168.30 Aligned_cols=322 Identities=18% Similarity=0.182 Sum_probs=194.7
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcce
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 129 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~ 129 (447)
.++++.+++.+.+.. +.. ....+...++++.+++.+.......+++++||++|+..++.... ..++.
T Consensus 10 ~~~~v~~a~~~~~~~----~~~-~~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~--------~~g~~ 76 (356)
T cd06451 10 VPPRVLKAMNRPMLG----HRS-PEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLL--------EPGDK 76 (356)
T ss_pred CCHHHHHHhCCCccC----CCC-HHHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhC--------CCCCE
Confidence 467777777544321 110 11234466788888888743233457899999999999987653 23467
Q ss_pred EEEEcCCCccch-hhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEE
Q 013204 130 FIARQKSYHGST-LIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAF 208 (447)
Q Consensus 130 vi~~~~~yhg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~v 208 (447)
|++..+++++.. .......|... ..++....+ ..+.+++++.+.. .++++|
T Consensus 77 vl~~~~~~~~~~~~~~~~~~g~~~------------~~v~~~~~~-------------~~~~~~l~~~i~~---~~~~~v 128 (356)
T cd06451 77 VLVGVNGVFGDRWADMAERYGADV------------DVVEKPWGE-------------AVSPEEIAEALEQ---HDIKAV 128 (356)
T ss_pred EEEecCCchhHHHHHHHHHhCCCe------------EEeecCCCC-------------CCCHHHHHHHHhc---cCCCEE
Confidence 888777666532 12221122111 111111000 0113677776652 245566
Q ss_pred EEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeee--cccCCCcccceeEEE
Q 013204 209 IAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF--AKALSSAYMPIGAIL 286 (447)
Q Consensus 209 i~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~--sK~l~gg~~~~g~~~ 286 (447)
++..+++..|.+.+ +++|.++|++||+++++|++|. +|.. ...... ..+|+++. +|.++++ .++|+++
T Consensus 129 ~i~~~~~~~G~~~~----~~~i~~~a~~~~~~li~D~~~~-~g~~--~~~~~~--~~~d~~~~s~~K~l~~p-~g~G~l~ 198 (356)
T cd06451 129 TLTHNETSTGVLNP----LEGIGALAKKHDALLIVDAVSS-LGGE--PFRMDE--WGVDVAYTGSQKALGAP-PGLGPIA 198 (356)
T ss_pred EEeccCCCcccccC----HHHHHHHHHhcCCEEEEeeehh-ccCc--cccccc--cCccEEEecCchhccCC-CCcceeE
Confidence 66666666777766 9999999999999999999986 5432 222222 23576654 6999986 5789999
Q ss_pred eChhHHHHhhhccCCCCcc---------Cc---CCCCCCcHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHhHhhc
Q 013204 287 VSPEVSEVIHSQSNTLGSF---------SH---GFTYSGHPVSCAVAIEALKIYKER---NIVEQVNKIAPKFQDGVKAF 351 (447)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~---------~~---~~t~~~~~~~~~aa~a~l~~~~~~---~~~~~~~~~~~~l~~~L~~l 351 (447)
.++++++.+...+...+.+ .. ....+.++..+.++.++++.+... ...++.+++.+++++.|+++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~ 278 (356)
T cd06451 199 FSERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEAL 278 (356)
T ss_pred ECHHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999887765200000000 00 112234555666667777765543 45567777888888888775
Q ss_pred cCCCceeeEee-eeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc-CceEEee-----CCEEEEecCCCCCHHHHHH
Q 013204 352 SDSPIIGEIRG-TGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH-GMLVRVS-----GDNIMMSPPFIMSPEEVDE 424 (447)
Q Consensus 352 ~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~-----g~~iR~~~~~~~t~e~i~~ 424 (447)
...+...... .+.+..+.+.... ....+.+.|.++ ||.+.++ ++.+|++++..+|++|+++
T Consensus 279 -g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~L~~~~gI~~~~g~~~~~~~~iRis~~~~~~~e~v~~ 346 (356)
T cd06451 279 -GLKLLAKPELRSPTVTAVLVPEGV-----------DGDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHMGEATREDVLG 346 (356)
T ss_pred -CCeeccCcccCCCceEEEECCCCC-----------CHHHHHHHHHHhCCEEEecccccccCCEEEEecCCCCCHHHHHH
Confidence 2222211111 1222223332111 144688899998 9998753 3579999999999999999
Q ss_pred HHHHHHHHHH
Q 013204 425 LISKYGKALK 434 (447)
Q Consensus 425 ~~~~l~~~l~ 434 (447)
++++|+++++
T Consensus 347 ~~~~l~~~~~ 356 (356)
T cd06451 347 VLSALEEALK 356 (356)
T ss_pred HHHHHHHHhC
Confidence 9999998763
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-18 Score=168.33 Aligned_cols=341 Identities=14% Similarity=0.134 Sum_probs=204.7
Q ss_pred EEEecCCccccccCCCCCHHHHHHHHHHHhcCCcc-cc-cC---cCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHH
Q 013204 34 KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY-HS-FW---NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEAN 108 (447)
Q Consensus 34 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~-~~---~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~ 108 (447)
.|+|..+. |..++.+.+++.+.+...... +. .. ........++.+.+++++.....++++|++|+++++
T Consensus 20 ~yld~~~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l 93 (403)
T TIGR01979 20 VYLDSAAT------SQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTESI 93 (403)
T ss_pred EEEeCccc------cCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHH
Confidence 68886433 446789999998877542111 11 00 001123456777888877433356899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhh---hhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHH
Q 013204 109 DTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLI---AASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEY 185 (447)
Q Consensus 109 ~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (447)
..++..+... ....++.||+.++.|+..... .....|... ..++....+.
T Consensus 94 ~~~~~~~~~~----~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~------------~~v~~~~~~~----------- 146 (403)
T TIGR01979 94 NLVAYSWGDS----NLKAGDEIVISEMEHHANIVPWQLLAERTGATL------------KFIPLDDDGT----------- 146 (403)
T ss_pred HHHHHHhhhh----cCCCCCEEEECcchhhHHHHHHHHHHHhcCcEE------------EEEecCCCCC-----------
Confidence 8888754210 002346777777766654321 111112111 1111111000
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCC
Q 013204 186 STRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIK 265 (447)
Q Consensus 186 ~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~ 265 (447)
.+++++++.+. +++++|++..+++..|.+.+ +++|.++|++||+++|+|++|+ +|.. .... ....
T Consensus 147 --~~~~~l~~~i~----~~~~lv~~~~~~~~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~g~~--~~~~--~~~~ 211 (403)
T TIGR01979 147 --LDLDDLEKLLT----EKTKLVAITHVSNVLGTVNP----VEEIAKLAHQVGAKVLVDGAQA-VPHM--PVDV--QALD 211 (403)
T ss_pred --CCHHHHHHHhc----cCCeEEEEEcccccccccCC----HHHHHHHHHHcCCEEEEEchhh-cCcc--ccCc--cccC
Confidence 01366666664 35667778877778888877 9999999999999999999986 4322 1112 2234
Q ss_pred CCeeee--cccCCCcccceeEEEeChhHHHHhhhccC---CCC-------cc----CcCCCCCCcHHHHHHHHHHHHHHh
Q 013204 266 PDLVSF--AKALSSAYMPIGAILVSPEVSEVIHSQSN---TLG-------SF----SHGFTYSGHPVSCAVAIEALKIYK 329 (447)
Q Consensus 266 ~d~v~~--sK~l~gg~~~~g~~~~~~~~~~~~~~~~~---~~~-------~~----~~~~t~~~~~~~~~aa~a~l~~~~ 329 (447)
+|++++ +|.++ + .++|++++++++++.+..... ... .+ .....-+.+..+++++.++++.+.
T Consensus 212 ~d~~~~s~~K~~g-p-~G~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~ 289 (403)
T TIGR01979 212 CDFYVFSGHKMYG-P-TGIGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLE 289 (403)
T ss_pred CCEEEEecccccC-C-CCceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHH
Confidence 787754 59664 3 468999999887776531100 000 00 000011345556666677777665
Q ss_pred h---hcHHHHHHHHHHHHHHhHhhccCCCceeeE--eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEe
Q 013204 330 E---RNIVEQVNKIAPKFQDGVKAFSDSPIIGEI--RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV 404 (447)
Q Consensus 330 ~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~--~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~ 404 (447)
+ +...++..++.+++++.|+++....+.... ...+.++.+.+.... ...+.+.|.++||.++.
T Consensus 290 ~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~~~~------------~~~~~~~L~~~gI~v~~ 357 (403)
T TIGR01979 290 AIGLENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIISFNVEGVH------------PHDVGTILDEEGIAVRS 357 (403)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEEEEeCCcC------------HHHHHHHHhhCCEEEcc
Confidence 4 345677777778888777765322222111 122456666654211 33577888899998875
Q ss_pred e-------------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 405 S-------------GDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 405 ~-------------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+ .+.+|+++++.+|++|+++++++|+++++.+
T Consensus 358 g~~~~~~~~~~~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~~ 402 (403)
T TIGR01979 358 GHHCAQPLMRRFGVPATCRASFYIYNTEEDIDALVEALKKVRKFF 402 (403)
T ss_pred hhhhhHHHHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 3 2569999999999999999999999877653
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-18 Score=171.02 Aligned_cols=332 Identities=13% Similarity=0.082 Sum_probs=195.4
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcc----cccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHH
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY----HSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEAN 108 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~ 108 (447)
..|+|..+. |..++.+++++.+.+...... +.......+...++.+.+++++. .+.+.+++++|+++++
T Consensus 18 ~~yl~~~~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~-~~~~~v~~~~~~t~~l 90 (397)
T TIGR01976 18 RVFFDNPAG------TQIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLN-ADPPEVVFGANATSLT 90 (397)
T ss_pred eEEecCCcc------CCCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcC-CCCCeEEEeCCHHHHH
Confidence 478887433 346889999999988653211 10001112345678888888874 3445799999999998
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCCccchh---hhhcccCCccccCCCCCCCCcceecCCCC-cccCCCCCCChhH
Q 013204 109 DTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTL---IAASLSGLPALHQKFDLPAPFVLHTDCPH-YWRYAHPGETEEE 184 (447)
Q Consensus 109 ~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 184 (447)
..++...... . .++++|++.++.|++... ......|.... .++.+. .+
T Consensus 91 ~~~~~~~~~~----~-~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~------------~~~~~~~~~----------- 142 (397)
T TIGR01976 91 FLLSRAISRR----W-GPGDEVIVTRLDHEANISPWLQAAERAGAKVK------------WARVDEATG----------- 142 (397)
T ss_pred HHHHHHHHhc----C-CCCCEEEEcCCchHhHHHHHHHHHHhcCCEEE------------EEeccccCC-----------
Confidence 8777654211 1 234678887777655421 11111222111 111110 00
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCC
Q 013204 185 YSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSI 264 (447)
Q Consensus 185 ~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~ 264 (447)
..+.+++++.+. +++.+|+++.+++..|.+.+ +++|.++|++||+++|+||+|. .|.. .. .....
T Consensus 143 --~~~~~~l~~~i~----~~~~lv~i~~~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~~~--~~--~~~~~ 207 (397)
T TIGR01976 143 --ELHPDDLASLLS----PRTRLVAVTAASNTLGSIVD----LAAITELVHAAGALVVVDAVHY-APHG--LI--DVQAT 207 (397)
T ss_pred --CcCHHHHHHhcC----CCceEEEEeCCCCCCCccCC----HHHHHHHHHHcCCEEEEehhhh-cccc--CC--CHHHc
Confidence 011366776664 34667888888778887776 9999999999999999999986 3211 11 22223
Q ss_pred CCCeee--ecccCCCcccceeEEEeChhHHHHhhhccCC--CCccCc-CCCCCCcHHHHHHHHHHHHHHhhhc-------
Q 013204 265 KPDLVS--FAKALSSAYMPIGAILVSPEVSEVIHSQSNT--LGSFSH-GFTYSGHPVSCAVAIEALKIYKERN------- 332 (447)
Q Consensus 265 ~~d~v~--~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~-~~t~~~~~~~~~aa~a~l~~~~~~~------- 332 (447)
.+|+++ ++|.++ +++|++++++++++.+...... ...... ....+.+...+++..++++.+.+.+
T Consensus 208 ~~d~~~~s~~K~~g---~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~ 284 (397)
T TIGR01976 208 GADFLTCSAYKFFG---PHMGILWGRPELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSR 284 (397)
T ss_pred CCCEEEEechhhcC---CceEEEEEcHHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccch
Confidence 468775 568773 5789999999988776532110 000000 0011234445555556666554321
Q ss_pred ----------HHHHHHHHHHHHHHhHhhccCCCceee--EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCc
Q 013204 333 ----------IVEQVNKIAPKFQDGVKAFSDSPIIGE--IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGM 400 (447)
Q Consensus 333 ----------~~~~~~~~~~~l~~~L~~l~~~~~~~~--~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 400 (447)
..++..++.+++++.|+++....+... ....+.++.+.+... ....+.++|.++||
T Consensus 285 ~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~L~~~gI 352 (397)
T TIGR01976 285 RERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVPTVSFTVHGL------------PPQRVVRRLADQGI 352 (397)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCceEEEEeCCc------------CHHHHHHHHHHCCe
Confidence 234445566666666665522222211 111334444444321 13458889999999
Q ss_pred eEEee----------------CCEEEEecCCCCCHHHHHHHHHHH
Q 013204 401 LVRVS----------------GDNIMMSPPFIMSPEEVDELISKY 429 (447)
Q Consensus 401 ~~~~~----------------g~~iR~~~~~~~t~e~i~~~~~~l 429 (447)
+++.+ ++.+|++++..+|++||+++++.|
T Consensus 353 ~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 353 DAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred EEEeCccchHHHHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence 99854 246999999999999999999864
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-18 Score=166.01 Aligned_cols=303 Identities=16% Similarity=0.172 Sum_probs=187.8
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQ 111 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~A 111 (447)
+.+.++|..+. ++++. | ..++..+.+.. .+.....++.+.+++++. ..++++++++|+++++..+
T Consensus 16 ~~~~~~~~~~~--~~~~~--~-~~~~~~~~~~~---------y~~~~~~~lr~~la~~~~-~~~~~i~~t~G~~~~i~~~ 80 (330)
T TIGR01140 16 PEDWLDFSTGI--NPLGP--P-VPPIPASAWAR---------YPDPEYDELRAAAAAYYG-LPAASVLPVNGAQEAIYLL 80 (330)
T ss_pred hhheeEccccC--CCCCC--C-hhhcchHHHhh---------CCCccHHHHHHHHHHHhC-CChhhEEECCCHHHHHHHH
Confidence 34678988776 44443 3 22221111111 122235788889988873 4567999999999998886
Q ss_pred HHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHH
Q 013204 112 VKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191 (447)
Q Consensus 112 l~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (447)
.+++ .++ +|++.+|+|+........ .|.. .+.++ +++
T Consensus 81 ~~~l---------~~g-~vl~~~p~y~~~~~~~~~-~g~~--------------~~~~~------------------d~~ 117 (330)
T TIGR01140 81 PRLL---------APG-RVLVLAPTYSEYARAWRA-AGHE--------------VVELP------------------DLD 117 (330)
T ss_pred HHHh---------CCC-eEEEeCCCcHHHHHHHHH-cCCE--------------EEEeC------------------CHH
Confidence 5543 223 688889999887543322 1111 11111 136
Q ss_pred HHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee--
Q 013204 192 NLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV-- 269 (447)
Q Consensus 192 ~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v-- 269 (447)
++++.+. +..+++++.|.|++| ..++.+.+++|+++|++||+++|+||+|.++...... ....+..++++
T Consensus 118 ~l~~~~~----~~~~v~i~~p~NPtG--~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~--~~~~~~~~~~i~~ 189 (330)
T TIGR01140 118 RLPAALE----ELDVLVLCNPNNPTG--RLIPPETLLALAARLRARGGWLVVDEAFIDFTPDASL--APQAARFPGLVVL 189 (330)
T ss_pred HHHhhcc----cCCEEEEeCCCCCCC--CCCCHHHHHHHHHHhHhcCCEEEEECcccccCCccch--hhHhccCCCEEEE
Confidence 6666653 223566777766555 4568899999999999999999999999877432111 11111123333
Q ss_pred -eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHh
Q 013204 270 -SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVEQVNKIAPKFQDG 347 (447)
Q Consensus 270 -~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~~~~~~~~~l~~~ 347 (447)
++||.++.+++|+|++++++++++.+... . ..+..+++++.++.+.++.-. ..+..++++++.+.+++.
T Consensus 190 ~S~SK~~g~~G~R~G~i~~~~~~~~~l~~~-------~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 260 (330)
T TIGR01140 190 RSLTKFFGLAGLRLGFVVAHPALLARLREA-------L--GPWTVNGPARAAGRAALADTAWQAATRARLAAERARLAAL 260 (330)
T ss_pred EecchhhcCchhhhhheeCCHHHHHHHHhc-------C--CCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Confidence 68999984448999999999998888632 1 245556777777766665211 122345556666666666
Q ss_pred HhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-------CEEEEecCCCCCHH
Q 013204 348 VKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-------DNIMMSPPFIMSPE 420 (447)
Q Consensus 348 L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-------~~iR~~~~~~~t~e 420 (447)
|+++ +.+....+.|.+..+.+.. ...+.++|+++||.+.++. +.+|++ +....+
T Consensus 261 L~~~---~~~~~~~~~~~f~~~~~~~--------------~~~l~~~l~~~gi~v~pg~~f~~~~~~~iRi~--~~~~~~ 321 (330)
T TIGR01140 261 LARL---GGLEVVGGTALFLLVRTPD--------------AAALHEALARRGILIRDFDNFPGLDPRYLRFA--LPTDEE 321 (330)
T ss_pred HHhC---CCceECCCCCeEEEEEcCC--------------HHHHHHHHHHCCEEEEECCCCCCCCCCEEEEE--ecCHHH
Confidence 6654 3222234456666666542 2358899999999999752 469999 444445
Q ss_pred HHHHHHHHH
Q 013204 421 EVDELISKY 429 (447)
Q Consensus 421 ~i~~~~~~l 429 (447)
+ +.++.+|
T Consensus 322 ~-~~~~~~l 329 (330)
T TIGR01140 322 N-DRLEEAL 329 (330)
T ss_pred H-HHHHHhh
Confidence 5 7777665
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-18 Score=172.08 Aligned_cols=345 Identities=13% Similarity=0.106 Sum_probs=202.6
Q ss_pred CHHHHHHHHHHHhcCC----cccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCC
Q 013204 51 EPRLVAAATAQLNTLP----FYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRP 125 (447)
Q Consensus 51 ~p~v~~a~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~ 125 (447)
+.++++++.+.+.... ..|+...+..+....+++.+.+... +..+++|++++|+++|+..+++++.. .
T Consensus 142 p~~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~-------~ 214 (534)
T PLN02231 142 SADAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-------S 214 (534)
T ss_pred CHHHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhcc-------C
Confidence 4566766666665421 1122223344444445555444322 24678999999999999999997631 2
Q ss_pred CcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCC---
Q 013204 126 NKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGP--- 202 (447)
Q Consensus 126 ~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~--- 202 (447)
.++.|++..|.|.++.......++.... ++.... +.+. .++++|++.+....+
T Consensus 215 ~gd~Vli~~P~Y~~y~~~~~~~g~~~v~-------------~~l~~~----------~~~~-~d~~~Le~~l~~~~~~~~ 270 (534)
T PLN02231 215 EKDGILCPIPQYPLYSASIALHGGTLVP-------------YYLDEA----------TGWG-LEISELKKQLEDARSKGI 270 (534)
T ss_pred CCCEEEEeCCCChhHHHHHHHcCCEEEE-------------EecCcc----------cCCC-CCHHHHHHHHHHHhhcCC
Confidence 3578999999999886554443332111 111000 0000 013777777754221
Q ss_pred CcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcc-cccc-cccc----CCC---CCCee---e
Q 013204 203 ETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRL-GTMF-GCDK----YSI---KPDLV---S 270 (447)
Q Consensus 203 ~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~-g~~~-~~~~----~~~---~~d~v---~ 270 (447)
+..++++++|.|++| .+.+.+.+++|.++|++||++||.||+|..+... +..+ .+.. .+. ...++ +
T Consensus 271 ~~k~ivl~nP~NPTG--~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S 348 (534)
T PLN02231 271 TVRALVVINPGNPTG--QVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQS 348 (534)
T ss_pred CeEEEEEeCCCCCCC--cCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEec
Confidence 223456777766665 5678999999999999999999999999987543 2222 1111 111 11244 5
Q ss_pred ecccCCC-cccceeEEEe---ChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHH-------HH----h-hhcHH
Q 013204 271 FAKALSS-AYMPIGAILV---SPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALK-------IY----K-ERNIV 334 (447)
Q Consensus 271 ~sK~l~g-g~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~-------~~----~-~~~~~ 334 (447)
|||.+.| .++++|++++ ++++++.+... ...+.+.+.+++.++..+++ .. + .+++.
T Consensus 349 ~SK~~~g~pGlRiGy~~~~~~~~~l~~~l~k~--------~~~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~ 420 (534)
T PLN02231 349 VSKGYYGECGKRGGYMEVTGFTSDVREQIYKV--------ASVNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGIL 420 (534)
T ss_pred cCcccccCCccceEEEEEecCCHHHHHHHHHH--------HhhhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHH
Confidence 7998743 3399999986 67888877532 11233445566666555552 11 1 12345
Q ss_pred HHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEE-EeecCCCCCCCCCC-CcchHHHHHHHHH-HcCceEEeeC-----
Q 013204 335 EQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGT-EFADNKSPNEPFPP-EWGIGAYFGAQCE-KHGMLVRVSG----- 406 (447)
Q Consensus 335 ~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i-~~~~~~~~~~~~~~-~~~~~~~~~~~l~-~~Gi~~~~~g----- 406 (447)
+.++++.+.+.+.|+++ +.+......|.|+.+ .+..+......... .......++..|+ +.||.+.|+.
T Consensus 421 ~~~~~r~~~l~~~L~~~---~gi~~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~ 497 (534)
T PLN02231 421 SSLARRAKTLEDALNSL---EGVTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQV 497 (534)
T ss_pred HHHHHHHHHHHHHHhcC---CCceecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCC
Confidence 66777777777777665 334445566666544 33211100000000 0000223455555 6799998762
Q ss_pred ---CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 013204 407 ---DNIMMSPPFIMSPEEVDELISKYGKALKATEERVK 441 (447)
Q Consensus 407 ---~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~~ 441 (447)
..+|++ +..++++|++++++|.+.++++.++++
T Consensus 498 ~g~~~~Rit--~~~~~e~l~eal~RL~~~~~~~~~~~~ 533 (534)
T PLN02231 498 PGTWHFRCT--ILPQEDKIPAIVSRLTEFHKSFMDEFR 533 (534)
T ss_pred CCCCeEEEE--eCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 249999 678999999999999999988877653
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.4e-18 Score=166.36 Aligned_cols=337 Identities=17% Similarity=0.178 Sum_probs=194.2
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcc-cc-c--Cc-CCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhH
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY-HS-F--WN-RTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEA 107 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~-~--~~-~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA 107 (447)
+.|||..+. +..++.+++++.+.+...... +. . +. ...+...++.+.+++++. .+.++++|++|++++
T Consensus 4 ~~yld~aa~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g-~~~~~v~~~~g~t~a 76 (402)
T TIGR02006 4 PIYLDYAAT------TPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIG-ADSREIVFTSGATES 76 (402)
T ss_pred cEEeeCCcC------CCCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEeCCHHHH
Confidence 478998654 346899999998887532111 10 0 00 012345566777888763 456789999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhc---ccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhH
Q 013204 108 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAAS---LSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEE 184 (447)
Q Consensus 108 ~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (447)
+..+++.+.... . .+++.|++.. ..|.+...... ..|.. +..++....+.
T Consensus 77 ~~~~l~~l~~~~---~-~~g~~Vi~~~-~~h~s~~~~~~~~~~~g~~------------v~~v~~~~~~~---------- 129 (402)
T TIGR02006 77 NNLAIKGIAHFY---K-SKGNHIITSK-TEHKAVLDTCRYLEREGFE------------VTYLPPKSNGL---------- 129 (402)
T ss_pred HHHHHHHHHHhh---c-CCCCEEEECC-CccHHHHHHHHHHHhcCCE------------EEEEccCCCCc----------
Confidence 999988664211 1 2235566554 44554332221 11211 11122211100
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCC
Q 013204 185 YSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSI 264 (447)
Q Consensus 185 ~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~ 264 (447)
.+++++++.+. +++++|++..+++..|.+.+ +++|.++|++||+++++|++|+ +|.. + ++..+.
T Consensus 130 ---~d~~~l~~~l~----~~~~lv~v~~~~n~tG~~~~----~~~I~~l~~~~g~~livD~a~a-~g~~--~--~~~~~~ 193 (402)
T TIGR02006 130 ---IDLEELKAAIR----DDTILVSIMHVNNEIGVIQD----IAAIGEICRERKVFFHVDAAQS-VGKI--P--INVNEL 193 (402)
T ss_pred ---CCHHHHHHhcC----CCCEEEEEECCCcCceeccc----HHHHHHHHHHcCCEEEEEcchh-cCCc--c--cCcccc
Confidence 01366666654 24678888888888888877 9999999999999999999997 5433 1 223345
Q ss_pred CCCeeeec--ccCCCcccceeEEEeChhHHHHhhhc---cCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh--hcHHHHH
Q 013204 265 KPDLVSFA--KALSSAYMPIGAILVSPEVSEVIHSQ---SNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE--RNIVEQV 337 (447)
Q Consensus 265 ~~d~v~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~--~~~~~~~ 337 (447)
.+|++++| |.+ |+ .++|+++.+++....+... ....+.+. ..+.+...+.+..++++.+.. +...++.
T Consensus 194 ~~D~~~~s~~K~~-gp-~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~---~gt~~~~~~~al~~al~~~~~~~~~~~~~~ 268 (402)
T TIGR02006 194 KVDLMSISGHKIY-GP-KGIGALYVRRKPRVRLEALIHGGGHERGMR---SGTLPTHQIVGMGEAFRIAKEEMAQDTAHV 268 (402)
T ss_pred CCCEEEEehhhhc-CC-CceEEEEEccCCCCCCCceecCCCccCCcc---CCCccHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 68999988 955 34 5789998887644332211 00000111 223455555555577776543 2344666
Q ss_pred HHHHHHHHHhHhhccCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEe------------
Q 013204 338 NKIAPKFQDGVKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV------------ 404 (447)
Q Consensus 338 ~~~~~~l~~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~------------ 404 (447)
+++.+++++.|+++....+....... ...+.+.|.... ...+...+ +++.++.
T Consensus 269 ~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~~v~f~~~~------------~~~~~~~l--~~i~v~~G~~c~~~~~~~~ 334 (402)
T TIGR02006 269 LALRDRLLNGIKSIEEVYLNGDLEHRVPGNLNVSFNYVE------------GESLIMAL--KDLAVSSGSACTSASLEPS 334 (402)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEEeCcC------------HHHHHHhc--CCEEEechhhcCCCCCCcc
Confidence 77777777777665321111111100 011123333111 11232222 2443321
Q ss_pred ------------eCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 405 ------------SGDNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 405 ------------~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
..+.+|+++...+|++|||++++.|+++++.++.
T Consensus 335 ~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~~~ 380 (402)
T TIGR02006 335 YVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKLRE 380 (402)
T ss_pred HHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 1256999999999999999999999999887653
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.8e-18 Score=166.34 Aligned_cols=344 Identities=15% Similarity=0.163 Sum_probs=201.3
Q ss_pred CCCCEEEecCCccccccCCC-CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-----cCCCCeEEEeCC
Q 013204 30 VNGKKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-----ASKMAKVFFTNS 103 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~~v~~~~s 103 (447)
..|+..+||..|.- ++++. .+|++.+++.+.+..... ++. .....++.+.+++++. +..++++++++|
T Consensus 30 ~~~~~~i~l~~g~p-~~~~~~~~~~i~~~~~~~~~~~~~-Y~~----~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G 103 (404)
T PRK09265 30 EEGHKILKLNIGNP-APFGFEAPDEILRDVIRNLPTAQG-YSD----SKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNG 103 (404)
T ss_pred HcCCCeEEecCCCC-CcCCCCCCHHHHHHHHHHhhcCCC-CCC----CCCcHHHHHHHHHHHhccCCCCCCcccEEEeCC
Confidence 36778999987633 34454 567888888877654322 221 1122345555555541 346789999999
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChh
Q 013204 104 GSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEE 183 (447)
Q Consensus 104 GseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (447)
+++++..+++... .+++.|++.+++|..+.......+..... +++....
T Consensus 104 ~~~~l~~~~~~~~--------~~gd~Vlv~~p~y~~~~~~~~~~g~~~v~-------------~~~~~~~---------- 152 (404)
T PRK09265 104 VSELIVMAMQALL--------NNGDEVLVPAPDYPLWTAAVSLSGGKPVH-------------YLCDEEA---------- 152 (404)
T ss_pred hHHHHHHHHHHhC--------CCCCEEEEeCCCCcChHHHHHHcCCEEEE-------------Eeccccc----------
Confidence 9999999888653 33578999999998765444332221110 1110000
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCC
Q 013204 184 EYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYS 263 (447)
Q Consensus 184 ~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~ 263 (447)
.+ ..+.+++++.+. ++...++++.|.|++| ...+.+.+++|.++|++||+++|+||+|.++...+.... ....
T Consensus 153 ~~-~~d~~~l~~~~~---~~~~~v~l~~P~NPtG--~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~-~~~~ 225 (404)
T PRK09265 153 GW-FPDLDDIRSKIT---PRTKAIVIINPNNPTG--AVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHI-SIAS 225 (404)
T ss_pred CC-CCCHHHHHHhcc---ccceEEEEECCCCCCC--cCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcC-CHHH
Confidence 00 011366666553 2333456666655554 455778999999999999999999999987744332110 1011
Q ss_pred CCCC--ee---eecccCCCcccceeEEEe--ChhH----HHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh-h
Q 013204 264 IKPD--LV---SFAKALSSAYMPIGAILV--SPEV----SEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE-R 331 (447)
Q Consensus 264 ~~~d--~v---~~sK~l~gg~~~~g~~~~--~~~~----~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-~ 331 (447)
..++ ++ +|||.++.+++++|+++. ++++ ++.+.. ....+++.+.+++.++.++|...+. .
T Consensus 226 ~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~q~~~~~~l~~~~~~~ 297 (404)
T PRK09265 226 LAPDLLCVTFNGLSKAYRVAGFRVGWMVLSGPKKHAKGYIEGLDM--------LASMRLCANVPAQHAIQTALGGYQSIN 297 (404)
T ss_pred cCCCceEEEEecchhhccCcccceEEEEEeCchHHHHHHHHHHHH--------HhccccCCCcHHHHHHHHHhcCchhHH
Confidence 1122 22 479999664599999995 3433 333321 1112345566777777776642111 1
Q ss_pred cHH---HHHHHHHHHHHHhHhhccCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee--
Q 013204 332 NIV---EQVNKIAPKFQDGVKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-- 405 (447)
Q Consensus 332 ~~~---~~~~~~~~~l~~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-- 405 (447)
++. ..+.++.+.+.+.|+++. .+...... |.++.+.+....... . .....+.+.+.++||.+.++
T Consensus 298 ~~~~~~~~~~~~r~~~~~~L~~~~---~~~~~~p~~g~~l~~~~~~~~~~~---~---~~~~~~~~~l~~~gv~v~pg~~ 368 (404)
T PRK09265 298 ELILPGGRLYEQRDRAWELLNAIP---GVSCVKPKGALYAFPKLDPKVYPI---H---DDEQFVLDLLLQEKVLLVQGTG 368 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC---CCcccCCCcceEEEEEecccccCC---C---CHHHHHHHHHHhCCEEEECchh
Confidence 111 234444555556665542 22223333 556666665421000 0 01334667788999999865
Q ss_pred -----CCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 406 -----GDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 406 -----g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.+.+|++ +..+++++++++++|.++++..
T Consensus 369 F~~~~~~~~Ri~--~~~~~e~l~~~l~rl~~~l~~~ 402 (404)
T PRK09265 369 FNWPEPDHFRIV--TLPRVDDLEEAIGRIGRFLSGY 402 (404)
T ss_pred hCCCCCCeEEEE--eCCCHHHHHHHHHHHHHHHHHh
Confidence 1469999 5678999999999999988653
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.1e-18 Score=177.62 Aligned_cols=352 Identities=11% Similarity=0.050 Sum_probs=211.5
Q ss_pred EEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc-C-CCCeEEEeCC
Q 013204 26 YVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA-S-KMAKVFFTNS 103 (447)
Q Consensus 26 ~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~-~~~~v~~~~s 103 (447)
++.+.+|..++++..+- +.++ .+|.+++++.+.+.+... ..+..+....+++++.+.+.- . ..+++++++|
T Consensus 690 ~~~~~~g~~vI~LsinE--~d~p-pPp~V~eAi~eal~~~~~----s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~G 762 (1082)
T PLN02672 690 SVSGSQESSLIHMDVDE--SFLP-VPSAVKASIFESFVRQNI----SESETDPRPSILQFIKSNYGFPTDSCTEFVYGDT 762 (1082)
T ss_pred CCcccCCCCEEEEeCCC--CCCC-CCHHHHHHHHHHHhhcCC----CCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCC
Confidence 34555678899987664 5566 688999999987755322 122445677888888887532 1 2248999998
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC--cccCCCCCCC
Q 013204 104 GSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH--YWRYAHPGET 181 (447)
Q Consensus 104 GseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 181 (447)
..+++..+++... .+++.|++.+|+|..+...+...+.... .++... .|.
T Consensus 763 s~elL~lll~aLl--------~pGD~VLVp~PtY~~Y~~~a~~~Ga~vv-------------~Vpl~~e~gf~------- 814 (1082)
T PLN02672 763 SLALFNKLVLCCV--------QEGGTLCFPAGSNGTYVSAAKFLKANFR-------------RIPTKSSDGFK------- 814 (1082)
T ss_pred HHHHHHHHHHHHc--------CCCCEEEEeCCChHHHHHHHHHcCCEEE-------------EEecccccCCC-------
Confidence 8888888887663 3358899999999888655554332211 111100 000
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcEEEEEEccc-cCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc---
Q 013204 182 EEEYSTRLANNLEDLILKEGPETIAAFIAEPV-IGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF--- 257 (447)
Q Consensus 182 ~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv-~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~--- 257 (447)
.+++.+++.+... ....++++.|. |++| .+++.+.+++|.++|++||+++|.||+|.++-..+...
T Consensus 815 ------lD~d~Le~al~~~--~~~~I~L~nPnhNPTG--~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~ 884 (1082)
T PLN02672 815 ------LTAKTLASTLETV--KKPWVYISGPTINPTG--LLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGW 884 (1082)
T ss_pred ------CCHHHHHHHhccC--CCCEEEEECcCCCCcC--ccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCccc
Confidence 0136677766421 22467888887 6655 56789999999999999999999999999775554321
Q ss_pred ccc----cC-CCCC--Cee---eecccCCCcccceeEEEeCh-hHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHH
Q 013204 258 GCD----KY-SIKP--DLV---SFAKALSSAYMPIGAILVSP-EVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALK 326 (447)
Q Consensus 258 ~~~----~~-~~~~--d~v---~~sK~l~gg~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~ 326 (447)
.+. .+ ...+ .++ +|||.++.+++++|++++++ ++++.+.... . ....+..+..++.++++++.
T Consensus 885 sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLRIGylIap~~eLi~~l~~~~----~--~s~~~~~~q~Aaaaalall~ 958 (1082)
T PLN02672 885 DLKSILSRLKSSNPSFAVALLGGLSTELLSGGHEFGFLALNDSVLIDAFHSAP----G--LSRPHSTLKYTIKKLLGLKN 958 (1082)
T ss_pred chhhHHHHhccccCCceEEEEeCcHHhhccHHHHheeEEeCCHHHHHHHHHhh----h--hcCCCcHHHHHHHHHHHHHh
Confidence 010 11 1112 222 57998877669999999865 4888876310 0 01111223334443433331
Q ss_pred H-----Hh-hhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEE-EEEeecCC--CCCCCCCC----CcchHHHHHH
Q 013204 327 I-----YK-ERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLIL-GTEFADNK--SPNEPFPP----EWGIGAYFGA 393 (447)
Q Consensus 327 ~-----~~-~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~-~i~~~~~~--~~~~~~~~----~~~~~~~~~~ 393 (447)
. .. -.+..+.++++.+++.+.|++. ++ ....+.|.++ ++.+..-. ..+..... .......+.+
T Consensus 959 ~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~~---Gi-~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae 1034 (1082)
T PLN02672 959 QKSSDLLDGVAEQKKILKSRAERLKETLEAC---GW-DVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIRE 1034 (1082)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC-eEecCCcEEEEEEEccccccccccccccccccccCCCHHHHHH
Confidence 0 00 1123344666666666666654 22 2345555554 33332100 00000000 0001456888
Q ss_pred HHHHc-CceEEeeC-----CEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 394 QCEKH-GMLVRVSG-----DNIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 394 ~l~~~-Gi~~~~~g-----~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
.|+++ ||.+.++. +.+||+ +..+++++++++++|++.++
T Consensus 1035 ~LLee~GVaV~PGs~FG~~g~~RIs--fa~~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672 1035 AILKSTGLCINSSSWTGIPGYCRFS--FALEDSEFDRALKAIARFKE 1079 (1082)
T ss_pred HHHHcCCEEEecCcccCCCCeEEEE--ecCCHHHHHHHHHHHHHHHH
Confidence 88865 99998752 569999 66799999999999998654
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.4e-18 Score=167.10 Aligned_cols=342 Identities=16% Similarity=0.118 Sum_probs=196.5
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccc-cC-c--CC-ChHHHHHHHHHHHhcCcCCCCeEEEeCChh
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS-FW-N--RT-TKPSLDLAKELLEMFTASKMAKVFFTNSGS 105 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~-~--~~-~~~~~~l~~~l~~~~~~~~~~~v~~~~sGs 105 (447)
++..|||..+ +|..++.+.+++.+.+........ .. . .. .....++ +.+ +++ +.++++++|++|+|
T Consensus 26 ~~~iyld~~a------~g~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~-g~~~~~v~~~~~~t 96 (406)
T TIGR01814 26 NAVIYLDGNS------LGLMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESL-LKL-RLV-GAKEDEVVVMNTLT 96 (406)
T ss_pred CCcEEecCCC------cCcCcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhh-ccc-ccc-CCCCCcEEEeCCch
Confidence 3457777532 344578888998877654221110 00 0 01 1122222 334 554 34678999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhh----cccCCccccCCCCCCCCcceecCCCCcccCCCCCCC
Q 013204 106 EANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAA----SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGET 181 (447)
Q Consensus 106 eA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (447)
+++..+++.+.. .+ .++..|+ .+..-|.+....+ ...|.... .....++....+
T Consensus 97 ~~l~~~~~~~~~----~~-~~~~~i~-~~~~~~~s~~~~~~~~~~~~g~~~~--------~~~~~~~~~~~g-------- 154 (406)
T TIGR01814 97 INLHLLLASFYK----PT-PKRYKIL-LEAKAFPSDHYAIESQLQLHGLTVE--------ESMVQIEPREEE-------- 154 (406)
T ss_pred HHHHHHHHHhcC----Cc-CCccEEE-ecCCCCChHHHHHHHHHHhcCCCcc--------cceEEeccCCCC--------
Confidence 999999886521 01 1123444 4544444422221 11111100 000011110000
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccccccc
Q 013204 182 EEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDK 261 (447)
Q Consensus 182 ~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~ 261 (447)
..+++++++.+.... +++++|+++.+++..|.+.| +++|.++|++||+++++|++|+ +|.. ++....
T Consensus 155 -----~~~~~~l~~~~~~~~-~~t~lv~~~~v~~~tG~~~~----~~~i~~~~~~~g~~~~vD~aq~-~G~~--~id~~~ 221 (406)
T TIGR01814 155 -----TLRLEDILDTIEKNG-DDIAVILLSGVQYYTGQLFD----MAAITRAAHAKGALVGFDLAHA-VGNV--PLDLHD 221 (406)
T ss_pred -----ccCHHHHHHHHHhcC-CCeEEEEEeccccccceecC----HHHHHHHHHHcCCEEEEEcccc-cCCc--cccccc
Confidence 001366666665432 46889999999999999988 9999999999999999999998 5543 222332
Q ss_pred CCCCCCeeeec--ccCCCcccceeEEEeChhHHHHhhhccCC--CC----ccCcC----------CCCCCcHHHHHHHHH
Q 013204 262 YSIKPDLVSFA--KALSSAYMPIGAILVSPEVSEVIHSQSNT--LG----SFSHG----------FTYSGHPVSCAVAIE 323 (447)
Q Consensus 262 ~~~~~d~v~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~~~--~~----~~~~~----------~t~~~~~~~~~aa~a 323 (447)
..+|++++| |.|.|| .+ |+++..++....+...... .. .+... ...+++..++++..+
T Consensus 222 --~gvD~~~~s~hK~l~g~-pG-~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~ 297 (406)
T TIGR01814 222 --WGVDFACWCTYKYLNAG-PG-AGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRG 297 (406)
T ss_pred --CCCCEEEEcCccccCCC-CC-eEEEEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHH
Confidence 346877665 888776 35 5555544333222211000 00 00000 012345667777777
Q ss_pred HHHHHhh---hcHHHHHHHHHHHHHHhHhhccC----CCceee--EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHH
Q 013204 324 ALKIYKE---RNIVEQVNKIAPKFQDGVKAFSD----SPIIGE--IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQ 394 (447)
Q Consensus 324 ~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~----~~~~~~--~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (447)
+++.+.+ +...++.+.+.+++++.|+++.. ..+... ....+.++.+.+. .. ...+.+.
T Consensus 298 al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~-~~------------~~~~~~~ 364 (406)
T TIGR01814 298 SLDIFDQAGMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP-VP------------GKAVFQA 364 (406)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec-CC------------HHHHHHH
Confidence 8887754 34567777788888888766421 111211 1112445555544 11 3457888
Q ss_pred HHHcCceEEeeC-CEEEEec-CCCCCHHHHHHHHHHHHHHH
Q 013204 395 CEKHGMLVRVSG-DNIMMSP-PFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 395 l~~~Gi~~~~~g-~~iR~~~-~~~~t~e~i~~~~~~l~~~l 433 (447)
|.++||++...+ +.||++| ++.+|++||++++++|++.+
T Consensus 365 L~~~gi~v~~~~~~~iRiS~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 365 LIKRGVIGDKREPSVIRVAPVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred HHHCCEEEeccCCCeEEEechhccCCHHHHHHHHHHHHHHh
Confidence 999999987654 5799999 68999999999999998764
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.7e-18 Score=159.91 Aligned_cols=297 Identities=17% Similarity=0.168 Sum_probs=183.6
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHH
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEAND 109 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~ 109 (447)
.+...++||+.+. ++++ +|.+.+++.+.......+ + ....+.+++++.+. +++++++|+++|+.
T Consensus 5 ~~~~~~i~l~~~~--np~~--p~~~~~a~~~~~~~~~~y------p--~~~~l~~~ia~~~~----~~I~vt~G~~~al~ 68 (311)
T PRK08354 5 IREEGLIDFSASV--NPYP--PEWLDEMFERAKEISGRY------T--YYEWLEEEFSKLFG----EPIVITAGITEALY 68 (311)
T ss_pred CCccceeEecCCC--CCCC--CHHHHHHHHHHHHHhhcC------C--ChHHHHHHHHHHHC----CCEEECCCHHHHHH
Confidence 3455789998764 5654 688999988776542211 2 24567888888862 36999999999998
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (447)
.++.++ .+++.|++.+|+|.++...+...+..... .+. +
T Consensus 69 ~~~~~~---------~~gd~vlv~~P~y~~~~~~~~~~g~~~~~-------------~~~-------------------d 107 (311)
T PRK08354 69 LIGILA---------LRDRKVIIPRHTYGEYERVARFFAARIIK-------------GPN-------------------D 107 (311)
T ss_pred HHHHhh---------CCCCeEEEeCCCcHHHHHHHHHcCCEEee-------------cCC-------------------C
Confidence 776543 23478999999998886555443322110 000 0
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV 269 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v 269 (447)
.+.+++.+. +...++++.|.|++| ...+.+.+++|.++|++||+++|.||+|.+|...+.. .. .+.++
T Consensus 108 ~~~l~~~~~----~~~~vi~~~P~NPTG--~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~--~~----~~~vi 175 (311)
T PRK08354 108 PEKLEELVE----RNSVVFFCNPNNPDG--KFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPES--PE----GENII 175 (311)
T ss_pred HHHHHHhhc----CCCEEEEecCCCCCC--CccCHHHHHHHHHHhhhcCcEEEEeCcchhccccccc--cC----CCcEE
Confidence 256666554 233577888876665 5668899999999999999999999999987443211 11 22233
Q ss_pred ---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 013204 270 ---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQD 346 (447)
Q Consensus 270 ---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~ 346 (447)
+|||.++-+++|+|++++ +.+.+... . ..+..+.++.+++.+.++ +. .+.+++..+.+++
T Consensus 176 ~~~S~SK~~~l~GlRiG~~v~---~~~~l~~~-------~--~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~ 238 (311)
T PRK08354 176 KLRTFTKSYGLPGIRVGYVKG---FEEAFRSV-------R--MPWSIGSTGYAFLEFLIE----DD-FEHLRKTMPLIWR 238 (311)
T ss_pred EEeccHhhcCCccceeeeeee---hHHHHHHc-------C--CCccCCHHHHHHHHHHHH----hH-HHHHHHHHHHHHH
Confidence 589998843399999998 44444421 1 133344455544444333 11 1233333333333
Q ss_pred hHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-----CEEEEecCCCCCHHH
Q 013204 347 GVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-----DNIMMSPPFIMSPEE 421 (447)
Q Consensus 347 ~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-----~~iR~~~~~~~t~e~ 421 (447)
..+.+...- ...+.|.++.+.+.+ ...+.+.|+++||.+.++. +.+||+ ..+.++
T Consensus 239 ~~~~l~~~l---~~~~~~~~~~~~~~~--------------~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~---~~~~~~ 298 (311)
T PRK08354 239 EKERFEKAL---YVKSDANFFIKDVGD--------------AEKFVEFLKRNGILVRDCTSFGLPGYIRFS---VRDREE 298 (311)
T ss_pred HHHHHHHhc---CCCCCCcEEEEECCC--------------HHHHHHHHHHCCeEEEecccCCCCCeEEEE---eCCHHH
Confidence 333331111 123455555554321 2357888999999999863 579999 456677
Q ss_pred HHHHHHHHHHH
Q 013204 422 VDELISKYGKA 432 (447)
Q Consensus 422 i~~~~~~l~~~ 432 (447)
.+++++.|++.
T Consensus 299 ~~~l~~al~~~ 309 (311)
T PRK08354 299 NEKLIRALREW 309 (311)
T ss_pred HHHHHHHHHHh
Confidence 78888877764
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-17 Score=164.05 Aligned_cols=346 Identities=13% Similarity=0.093 Sum_probs=199.8
Q ss_pred CCCEEEecCCccccc-cCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc-----CCCCeEEEeCCh
Q 013204 31 NGKKYLDSLAGLWCT-ALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA-----SKMAKVFFTNSG 104 (447)
Q Consensus 31 dg~~~lD~~~~~~~~-~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~~v~~~~sG 104 (447)
.|..++|+..+.... +.=..++.+.+++.+.+...... . ..+.....++.+.+++++.. ...+++++++|+
T Consensus 29 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~~-~--Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~ 105 (403)
T TIGR01265 29 PEKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFN-G--YAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGC 105 (403)
T ss_pred cCCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCCC-C--CCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecCh
Confidence 467899997774321 11124688999988877542211 0 11223344555555555431 245789999999
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhH
Q 013204 105 SEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEE 184 (447)
Q Consensus 105 seA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (447)
++|+..+++... ..+++|++.++.|..+...+.... ... ..++.+.. . .
T Consensus 106 t~al~~~~~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~g-~~~------------~~~~~~~~-------~---~ 154 (403)
T TIGR01265 106 SQAIEICIEALA--------NPGANILVPRPGFPLYDTRAAFSG-LEV------------RLYDLLPE-------K---D 154 (403)
T ss_pred HHHHHHHHHHhC--------CCCCEEEEeCCCchhHHHHHHHcC-CEE------------EEecCCcc-------c---C
Confidence 999999999763 234679999999866543332211 111 11111000 0 0
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-ccccCC
Q 013204 185 YSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-GCDKYS 263 (447)
Q Consensus 185 ~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~~~~~~ 263 (447)
+ ..+++++++.+. ++...++++.|.|++| ...+.+.+++|.++|+++|+++|+||+|..|...+..+ ....+.
T Consensus 155 ~-~~d~~~l~~~~~---~~~~~v~i~~p~NPtG--~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 228 (403)
T TIGR01265 155 W-EIDLDGLEALAD---EKTVAIVVINPSNPCG--SVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFA 228 (403)
T ss_pred C-ccCHHHHHHHhC---cCccEEEEecCCCCCC--CCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhc
Confidence 0 011366666553 3344556666655554 45677889999999999999999999999885544322 111111
Q ss_pred CCCCee---eecccCCCcccceeEEEeC-h-h-----HHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh---h
Q 013204 264 IKPDLV---SFAKALSSAYMPIGAILVS-P-E-----VSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK---E 330 (447)
Q Consensus 264 ~~~d~v---~~sK~l~gg~~~~g~~~~~-~-~-----~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~---~ 330 (447)
-...++ +|||.++.+++++|++++. + + +++.+.. +. ..++..+.+++.++.++++... -
T Consensus 229 ~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~q~~~~~~l~~~~~~~~ 300 (403)
T TIGR01265 229 SIVPVLSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKN-------LL-QRILGPATIVQGALPDILENTPQEFF 300 (403)
T ss_pred cCCcEEEEeecccccCCCcceEEEEEEeCchhhhHHHHHHHHHH-------Hh-hhhcCCChHHHHHHHHHHHhChHHHH
Confidence 112233 5899876655999999974 2 2 3333321 11 1134456777777776665311 1
Q ss_pred hcHHHHHHHHHHHHHHhHhhccCCCceeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHH-HHcCceEEeeC--
Q 013204 331 RNIVEQVNKIAPKFQDGVKAFSDSPIIGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQC-EKHGMLVRVSG-- 406 (447)
Q Consensus 331 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~g-- 406 (447)
.+..+.++++.+.+.+.|+.+ +.+..+ +..|.++.+.+....... ......+...+ .++||.+.++.
T Consensus 301 ~~~~~~~~~~~~~l~~~L~~~---~~~~~~~p~~g~f~~~~~~~~~~~~------~~~~~~~~~~l~~~~gv~v~pg~~f 371 (403)
T TIGR01265 301 DGKISVLKSNAELCYEELKDI---PGLVCPKPEGAMYLMVKLELELFPE------IKDDVDFCEKLVREESVICLPGSAF 371 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhcC---CCceecCCCceeEEEEeccccccCC------CCCHHHHHHHHHHhCCEEEeCcccc
Confidence 223344455555555555543 222222 334667777765421100 00133466664 57899998753
Q ss_pred ---CEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 407 ---DNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 407 ---~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+.+|++ +..+++++++++++|.+.+++
T Consensus 372 ~~~~~iRis--~~~~~~~l~~~l~~l~~~~~~ 401 (403)
T TIGR01265 372 GLPNWVRIT--ITVPESMLEEACSRIKEFCER 401 (403)
T ss_pred CCCCeEEEE--ecCCHHHHHHHHHHHHHHHHh
Confidence 579999 556789999999999888754
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.4e-19 Score=169.32 Aligned_cols=285 Identities=14% Similarity=0.158 Sum_probs=178.4
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 154 (447)
+.....++.+.+++.+ +.++++|++++|+++++..+++... +++++.|++.+|+|..+...+... |...
T Consensus 55 p~~~~~~l~~~~a~~~-g~~~~~I~~~~Gs~e~i~~~~~~~~-------~~g~~~vli~~P~y~~y~~~~~~~-G~~~-- 123 (351)
T PRK01688 55 PECQPKAVIENYAAYA-GVKPEQVLVSRGADEGIELLIRAFC-------EPGKDAILYCPPTYGMYSVSAETI-GVEI-- 123 (351)
T ss_pred CCCChHHHHHHHHHHh-CCCHHHEEEcCCHHHHHHHHHHHhc-------CCCCCEEEEcCCCHHHHHHHHHHc-CCEE--
Confidence 4444578888888886 4577899999999999999988653 133478999999997665433322 2111
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
..++....+. .+++++++.+. +...+++++|.|++| ...+.+.+++|.+.|
T Consensus 124 ----------~~v~~~~~~~-------------~d~~~l~~~~~----~~~lv~l~nPnNPTG--~~~~~~~l~~l~~~~ 174 (351)
T PRK01688 124 ----------RTVPTLDNWQ-------------LDLPAIADNLD----GVKVVYVCSPNNPTG--NLINPQDLRTLLELT 174 (351)
T ss_pred ----------EEeecCCCCC-------------CCHHHHHHhcc----CCcEEEEeCCCCCCC--CCCCHHHHHHHHHhC
Confidence 1111111111 01255555441 333456666666665 455778889999988
Q ss_pred HhcCCEEEEehhhcCCCccccccccccCCCCCCee---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCC
Q 013204 235 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTY 311 (447)
Q Consensus 235 ~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 311 (447)
++ ++++|+||+|..|... ..........+.++ +|||.++-+++|+|++++++++++.+... . ..+
T Consensus 175 ~~-~~~vivDEay~~f~~~--~s~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~i~~~~~i~~l~~~-------~--~~~ 242 (351)
T PRK01688 175 RG-KAIVVADEAYIEFCPQ--ASLAGWLAEYPHLVILRTLSKAFALAGLRCGFTLANEEVINLLLKV-------I--APY 242 (351)
T ss_pred CC-CcEEEEECchhhcCCC--CChHHHHhhCCCEEEEecchHhhcCHHHHHhHHhCCHHHHHHHHhc-------c--CCC
Confidence 86 6889999999877421 11111112224544 68998874448999999999999888632 1 234
Q ss_pred CCcHHHHHHHHHHHHHH--h-hhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchH
Q 013204 312 SGHPVSCAVAIEALKIY--K-ERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIG 388 (447)
Q Consensus 312 ~~~~~~~~aa~a~l~~~--~-~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~ 388 (447)
..+.+++.++.++|+.. + -.+..+.+.+.++++.+.|+++.... ...+..+.++.+.+.+ .
T Consensus 243 ~v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~--~~~ps~~nfi~~~~~~--------------~ 306 (351)
T PRK01688 243 PLSTPVADIAAQALSPQGIAAMRERVAEINANRQWLIAALKEIPCVE--QVFDSETNYILARFTA--------------S 306 (351)
T ss_pred CCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--eECCCCCcEEEEEcCC--------------H
Confidence 45556666666666521 1 12223444555566666666552211 1223446666665531 3
Q ss_pred HHHHHHHHHcCceEEeeC------CEEEEecCCCCCHHHHHHHHHHHH
Q 013204 389 AYFGAQCEKHGMLVRVSG------DNIMMSPPFIMSPEEVDELISKYG 430 (447)
Q Consensus 389 ~~~~~~l~~~Gi~~~~~g------~~iR~~~~~~~t~e~i~~~~~~l~ 430 (447)
..+.+.|+++||.++.++ +.+|++ ..+++++++++++|+
T Consensus 307 ~~l~~~L~~~gi~vr~~~~~~~~~~~iRis---~~~~~e~~~l~~al~ 351 (351)
T PRK01688 307 SAVFKSLWDQGIILRDQNKQPGLSNCLRIT---IGTREECQRVIDALR 351 (351)
T ss_pred HHHHHHHHHCCeEEEECCCcCCCCCeEEEe---CCCHHHHHHHHHhhC
Confidence 458889999999998652 569999 448899999998873
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-18 Score=168.52 Aligned_cols=341 Identities=11% Similarity=0.046 Sum_probs=189.3
Q ss_pred EEEecCCccccccCCCCC--HHHHHHHHHHHhcCCc-ccccCcCCChHHHHHHHHHHHhcCc-CCCCeE--EEeCChhhH
Q 013204 34 KYLDSLAGLWCTALGGSE--PRLVAAATAQLNTLPF-YHSFWNRTTKPSLDLAKELLEMFTA-SKMAKV--FFTNSGSEA 107 (447)
Q Consensus 34 ~~lD~~~~~~~~~lG~~~--p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~v--~~~~sGseA 107 (447)
..+||..|....+-++.+ +.+.+++.+.+..... .|+...+..+....+++++.+.... ...+++ ++|+|+++|
T Consensus 27 ~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~a 106 (396)
T PRK09257 27 DKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGA 106 (396)
T ss_pred CcEecceeeEECCCCCEeccHHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHH
Confidence 568988775322222223 6777787776643211 1222233333344444443322111 146666 999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 108 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 108 ~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
+..++++.... ..++.|++.+|+|.++.......+.... .+++.+. +.+ .
T Consensus 107 l~~~~~~l~~~------~pGd~Vlv~~P~y~~~~~~~~~~g~~~v-------------~v~~~~~----------~~~-~ 156 (396)
T PRK09257 107 LRVGADFLKRA------FPDAKVWVSDPTWPNHRAIFEAAGLEVK-------------TYPYYDA----------ATK-G 156 (396)
T ss_pred HHHHHHHHHHh------CCCCeEEECCCCcccHHHHHHHcCCcEE-------------EEecccc----------ccC-c
Confidence 99998755311 2347899999999988655554333221 1111000 000 0
Q ss_pred HHHHHHHHHHHhhCCCcEEEEE-EccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcc-cc-cccc-ccCC
Q 013204 188 RLANNLEDLILKEGPETIAAFI-AEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRL-GT-MFGC-DKYS 263 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi-~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~-g~-~~~~-~~~~ 263 (447)
.+++++++.+....+.+ .+++ ..|.|++| ...+.+.+++|.++|++||+++|.||+|.++... +. .... ...+
T Consensus 157 ~d~~~l~~~~~~~~~~~-~~~i~~~p~NPTG--~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~ 233 (396)
T PRK09257 157 LDFDAMLADLSQAPAGD-VVLLHGCCHNPTG--ADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAA 233 (396)
T ss_pred cCHHHHHHHHHhCCCCC-EEEEeCCCCCCCC--CCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHh
Confidence 12477777766433323 3444 44455555 5668999999999999999999999999987532 11 1111 1111
Q ss_pred CCCCee---eecccCCCcccceeEEEe---ChhH----HHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHH-----
Q 013204 264 IKPDLV---SFAKALSSAYMPIGAILV---SPEV----SEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIY----- 328 (447)
Q Consensus 264 ~~~d~v---~~sK~l~gg~~~~g~~~~---~~~~----~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~----- 328 (447)
..+.++ +|||.++..++|+|++++ +++. +..+.. .........+++++.++.+.++.-
T Consensus 234 ~~~~vi~i~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~ 306 (396)
T PRK09257 234 AGLELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKA-------TIRTNYSNPPAHGAAIVATILNDPELRAE 306 (396)
T ss_pred cCCcEEEEEEcCCcCccccccceeEEEEeCCHHHHHHHHHHHHH-------HhhhhcCCCcHHHHHHHHHHhCCHHHHHH
Confidence 122333 689999862389999873 3443 333321 011122334566665555555311
Q ss_pred -h--hhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeee-eEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEe
Q 013204 329 -K--ERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTG-LILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV 404 (447)
Q Consensus 329 -~--~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~ 404 (447)
. -++..+.++++.+.+.+.|+++..-.........| .++++.+.+ ..+.+.+.+.||.+.+
T Consensus 307 ~~~~~~~~r~~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~~~w~~l~~---------------~~~~~l~~~~~V~~~p 371 (396)
T PRK09257 307 WEAELEEMRERIKAMRQLLVEALKAKGPSRDFDFIARQRGMFSYSGLTP---------------EQVDRLREEFGVYAVG 371 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccceEEEecCCCH---------------HHHHHHHHcCCEEEcC
Confidence 0 12244566666666666666651100122233444 444454421 2244555678998887
Q ss_pred eCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 405 SGDNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 405 ~g~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
.+ ||+.. ..++++|++++++|++++
T Consensus 372 ~~---ri~~~-~~~~~~i~~~~~~i~~~~ 396 (396)
T PRK09257 372 SG---RINVA-GLNESNIDYVAEAIAAVL 396 (396)
T ss_pred CC---eEEEe-eCCHHHHHHHHHHHHhhC
Confidence 54 88832 389999999999998753
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6e-18 Score=164.82 Aligned_cols=323 Identities=14% Similarity=0.116 Sum_probs=195.8
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQ 111 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~A 111 (447)
+..++||+.+. +++| .+|.+.+++.+.......| +.....++.+.+++.+. .+.+++++++|+++++..+
T Consensus 35 ~~~~i~l~~~~--~~~~-~~~~~~~al~~~~~~~~~Y------~~~~g~~lr~~ia~~~~-~~~~~i~~t~G~~~~l~~~ 104 (371)
T PRK05166 35 VPRIAKLGSNE--NPLG-PSPAVRRAFADIAELLRLY------PDPQGRALREAIAARTG-VPADRIILGNGSEDLIAVI 104 (371)
T ss_pred CcceEEcCCCC--CCCC-CCHHHHHHHHHHHHHhhcC------CCCcHHHHHHHHHHHhC-cCHHHEEEcCCHHHHHHHH
Confidence 44789998764 5566 5788888888755432222 11112368888888763 4667899999999999888
Q ss_pred HHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHH
Q 013204 112 VKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191 (447)
Q Consensus 112 l~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (447)
+.... ..++.|++.+|.|.......... |... ..++....+. .+++
T Consensus 105 ~~~~~--------~~gd~vli~~P~y~~~~~~~~~~-g~~~------------~~v~~~~~~~-------------~~~~ 150 (371)
T PRK05166 105 CRAVL--------RPGDRVVTLYPSFPLHEDYPTMM-GARV------------ERVTVTPDLG-------------FDLD 150 (371)
T ss_pred HHHhc--------CCCCEEEEcCCChHHHHHHHHHc-CCeE------------EEeecCCCCC-------------CCHH
Confidence 87653 33578899999997764333221 2111 1111110000 0136
Q ss_pred HHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc-ccccccC-CCCCCee
Q 013204 192 NLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT-MFGCDKY-SIKPDLV 269 (447)
Q Consensus 192 ~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~-~~~~~~~-~~~~d~v 269 (447)
++++.+.. +...+++.+|.|++ | ...+.+.+++|.++|++ ++++|+||+|..|...+. ....... ...+.++
T Consensus 151 ~l~~~~~~---~~~~v~l~~p~NPt-G-~~~~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi 224 (371)
T PRK05166 151 ALCAAVAR---APRMLMFSNPSNPV-G-SWLTADQLARVLDATPP-ETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWI 224 (371)
T ss_pred HHHHhhhc---CCCEEEEeCCCCCC-C-CCCCHHHHHHHHHhCCC-CcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEE
Confidence 66666642 22334455665555 4 45577788888888875 899999999987742221 1111111 1122333
Q ss_pred ---eecccCCCcccceeEEEe-ChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHH
Q 013204 270 ---SFAKALSSAYMPIGAILV-SPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVEQVNKIAPKF 344 (447)
Q Consensus 270 ---~~sK~l~gg~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~~~~~~~~~l 344 (447)
+|||.++.+++|+|+++. ++++++.+... . ..+..+.+++.++.+++..-+ -++..+.++++.+.+
T Consensus 225 ~i~SfSK~~~l~GlRiG~~i~~~~~l~~~~~~~-------~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l 295 (371)
T PRK05166 225 VLRTFSKAYGLAGLRVGYGLVSDPELVGLLDRV-------R--TPFNVNGAAQAAALAALDDEEHLAKGVALALAERERL 295 (371)
T ss_pred EEeechHhhhcchhheeeeecCCHHHHHHHHHh-------c--cCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 589999843389999775 67888877531 1 234557777776776664211 122334455555666
Q ss_pred HHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-----CEEEEecCCCCCH
Q 013204 345 QDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-----DNIMMSPPFIMSP 419 (447)
Q Consensus 345 ~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-----~~iR~~~~~~~t~ 419 (447)
.+.|++. ++ ...+..|.++.+.+..+ ...+.+.|+++||.+.++. +.+|++ ..+.
T Consensus 296 ~~~L~~~---g~-~~~p~~g~fl~~~~~~~-------------~~~l~~~l~~~gi~v~p~~~~~~~~~iRi~---~~~~ 355 (371)
T PRK05166 296 KKELAEM---GY-RIAPSRANFLFFDARRP-------------ASAVAEALLRQGVIVKPWKQPGFETFIRVS---IGSP 355 (371)
T ss_pred HHHHHHC---cC-eeCCCcCCEEEEeCCCC-------------HHHHHHHHHHCCeEEecCCCCCCCCeEEEE---cCCH
Confidence 6666654 22 12344566766654321 3458889999999998762 569999 3467
Q ss_pred HHHHHHHHHHHHHH
Q 013204 420 EEVDELISKYGKAL 433 (447)
Q Consensus 420 e~i~~~~~~l~~~l 433 (447)
++.+++.+.|++.+
T Consensus 356 ~~~~~l~~~l~~i~ 369 (371)
T PRK05166 356 EENDHFVAALDKVL 369 (371)
T ss_pred HHHHHHHHHHHHHh
Confidence 77888888887654
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-18 Score=165.64 Aligned_cols=323 Identities=13% Similarity=0.113 Sum_probs=189.1
Q ss_pred EEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHH
Q 013204 35 YLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKL 114 (447)
Q Consensus 35 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~ 114 (447)
.+||+|+.+. | .+|.+.+++.+....... .++.+...+|++.+++.+ +.+.+++++||++++..++..
T Consensus 1 ~~~~~~~~~~---~-p~~~~~~a~~~~~~~~~~-----Y~~~~~~~~L~~~la~~~---g~~~~~v~~~g~~a~~~~l~~ 68 (333)
T PRK10534 1 MIDLRSDTVT---R-PSRAMLEAMMAAPVGDDV-----YGDDPTVNALQDYAAELS---GKEAALFLPTGTQANLVALLS 68 (333)
T ss_pred CcccccccCC---C-CCHHHHHHHHhccCCCcc-----cCCCHHHHHHHHHHHHHh---CCCeEEEeCchHHHHHHHHHH
Confidence 3788888532 3 689999998775543221 125677889999999986 445678999999999888875
Q ss_pred HHHHHHhcCCCCcceEEEEcCCCccchh-h-hhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHH
Q 013204 115 VWYYNNALGRPNKKKFIARQKSYHGSTL-I-AASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 192 (447)
Q Consensus 115 ~~~~~~~~~~~~~~~vi~~~~~yhg~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (447)
.. ...++|++..++|.-... . .....+.. ...++....+. .++++
T Consensus 69 ~~--------~~gd~vi~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-------------~d~~~ 115 (333)
T PRK10534 69 HC--------ERGEEYIVGQAAHNYLYEAGGAAVLGSIQ------------PQPIDAAADGT-------------LPLDK 115 (333)
T ss_pred hc--------CCCCeeEEechhhhhHhcCCchHHhcCce------------EEeecCCCCCC-------------CCHHH
Confidence 42 223567765555421111 0 11111000 00111111111 01366
Q ss_pred HHHHHHhhC--CCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc-ccccccCCCCCC--
Q 013204 193 LEDLILKEG--PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT-MFGCDKYSIKPD-- 267 (447)
Q Consensus 193 le~~l~~~~--~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~-~~~~~~~~~~~d-- 267 (447)
|++.+.... ...+.+|+++..+ .|. +.+.+.+++|.++|++|+++|++||+|. |+..+. ........-.+|
T Consensus 116 l~~~i~~~~~~~~~~~lv~l~np~--~G~-v~~~~~l~~i~~~~~~~~~~lvvDEA~~-~~~~~~~~~~~~~~~~~~~~~ 191 (333)
T PRK10534 116 VAAKIKPDDIHFARTRLLSLENTH--NGK-VLPREYLKQAWEFTRERNLALHVDGARI-FNAVVAYGCELKEITQYCDSF 191 (333)
T ss_pred HHHhhcccCcCcccceEEEEecCC--CCe-ecCHHHHHHHHHHHHHcCCeEEeeHHHH-HHHHHHcCCCHHHHHhcCCEE
Confidence 666553210 0134555555322 354 4467889999999999999999999976 432110 000100001123
Q ss_pred eeeecccCCCccccee-EEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 013204 268 LVSFAKALSSAYMPIG-AILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQD 346 (447)
Q Consensus 268 ~v~~sK~l~gg~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~ 346 (447)
+++|||+++. ++| ++++++++++.+.... . .....+..+.++++++.++++.. .+..+...+.++++.+
T Consensus 192 ~~s~SK~~~~---~~G~~~~~~~~~i~~~~~~~----~-~~~~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~r~~l~~ 261 (333)
T PRK10534 192 TICLSKGLGT---PVGSLLVGNRDYIKRARRWR----K-MTGGGMRQAGILAAAGLYALKHN--VARLQEDHDNAAWLAE 261 (333)
T ss_pred EEEeEcCCCC---cccceEEcCHHHHHHHHHHH----H-HhCCchhhHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHH
Confidence 4579998764 467 5778999988876321 0 00112223345566666666531 2233344445667778
Q ss_pred hHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeCCEEEEecCCCCCHHHHHHHH
Q 013204 347 GVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELI 426 (447)
Q Consensus 347 ~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g~~iR~~~~~~~t~e~i~~~~ 426 (447)
.|+++ +..+ .++.+.++.+.+... ....+.+.|+++||++.++ ..+|++..+.+|++++++++
T Consensus 262 ~L~~~-g~~~---~~~~~nfv~~~~~~~------------~~~~~~~~l~~~gi~v~~~-~~~rl~~~~r~t~e~~~~~~ 324 (333)
T PRK10534 262 QLREA-GADV---MRQDTNMLFVRVGEE------------QAAALGEYMRERNVLINAS-PIVRLVTHLDVSREQLAEVV 324 (333)
T ss_pred HHHhC-CCcc---CCCCceEEEEECCch------------hHHHHHHHHHHcCeeecCC-ceEEEEEEeCCCHHHHHHHH
Confidence 88775 2222 233566766665421 1345778899999999875 46899876678999999999
Q ss_pred HHHHHHH
Q 013204 427 SKYGKAL 433 (447)
Q Consensus 427 ~~l~~~l 433 (447)
++|++.+
T Consensus 325 ~~l~~~~ 331 (333)
T PRK10534 325 AHWRAFL 331 (333)
T ss_pred HHHHHHh
Confidence 9998765
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-17 Score=162.67 Aligned_cols=341 Identities=14% Similarity=0.114 Sum_probs=196.1
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCC---cccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP---FYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEA 107 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA 107 (447)
+...+||..+... + ..++.+.+++.+...... ..+....+..+....+++.+...+. ..+++++++++|++++
T Consensus 32 ~~~~~~l~~g~p~--~-~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~a 108 (394)
T PRK06836 32 ADNVFDFSLGNPS--V-PPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGA 108 (394)
T ss_pred CCCeEEecCcCCC--C-CCCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHH
Confidence 4567899776321 2 246788888877765321 1111112223333344444443321 2356789999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 108 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 108 ~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
+..+++.+. ..++.|++.+++|.++...... .|... ..++..+. .+ .
T Consensus 109 l~~~~~~l~--------~~gd~Vli~~p~~~~~~~~~~~-~g~~v------------~~v~~~~~-----------~~-~ 155 (394)
T PRK06836 109 LNVALKAIL--------NPGDEVIVFAPYFVEYRFYVDN-HGGKL------------VVVPTDTD-----------TF-Q 155 (394)
T ss_pred HHHHHHHhc--------CCCCEEEEcCCCCccHHHHHHH-cCCEE------------EEEecCCc-----------cC-c
Confidence 999888653 2347899999999886543322 12111 11111100 00 0
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHh------cCCEEEEehhhcCCCcccccccccc
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKK------YDILFIADEVICAFGRLGTMFGCDK 261 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~------~g~~li~DEv~~g~g~~g~~~~~~~ 261 (447)
.+++++++.+. + ++++|++...++.+| ...+.+.+++|.++|++ ||+++|.||+|.++...+.... ..
T Consensus 156 ~d~~~l~~~~~---~-~~~~v~~~~p~NPtG-~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~-~~ 229 (394)
T PRK06836 156 PDLDALEAAIT---P-KTKAVIINSPNNPTG-VVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVP-YI 229 (394)
T ss_pred CCHHHHHhhcC---c-CceEEEEeCCCCCCC-cCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCC-Ch
Confidence 11366777664 2 344444444444445 45577889999999999 8999999999987744332111 00
Q ss_pred CCCCCCee---eecccCCCcccceeEEEeChhHHHH--hhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHH
Q 013204 262 YSIKPDLV---SFAKALSSAYMPIGAILVSPEVSEV--IHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQ 336 (447)
Q Consensus 262 ~~~~~d~v---~~sK~l~gg~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~ 336 (447)
....+.++ +|||.++.+++++|++++++++.+. +........ .....+..+++.+.++...++ +......
T Consensus 230 ~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~q~~~~~~l~---~~~~~~~ 304 (394)
T PRK06836 230 FKYYDNSIVVYSFSKSLSLPGERIGYIAVNPEMEDADDLVAALVFAN--RILGFVNAPALMQRVVAKCLD---ATVDVSI 304 (394)
T ss_pred HHccCcEEEEecchhhccCcceeeEEEecCHHHhhhHHHHHHHHHHh--hccccccCCHHHHHHHHHHhC---ChHHHHH
Confidence 11112333 4799998433899999998876332 110000000 001123445556665555443 2222345
Q ss_pred HHHHHHHHHHhHhhccCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-----CEEE
Q 013204 337 VNKIAPKFQDGVKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-----DNIM 410 (447)
Q Consensus 337 ~~~~~~~l~~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-----~~iR 410 (447)
++++.+.+.+.|++. +. ...... |.++.+.++... ...+.+.|.++||.+.++. +.+|
T Consensus 305 ~~~~r~~l~~~L~~~---g~-~~~~~~gg~~~~~~~~~~~------------~~~~~~~l~~~gv~v~~g~~f~~~~~iR 368 (394)
T PRK06836 305 YKRNRDLLYDGLTEL---GF-ECVKPQGAFYLFPKSPEED------------DVAFCEKAKKHNLLLVPGSGFGCPGYFR 368 (394)
T ss_pred HHHHHHHHHHHHHhC---CC-EeecCCceEEEEEeCCCCC------------HHHHHHHHHhCCEEEECchhcCCCCeEE
Confidence 555666666666554 22 223333 445555443211 3456788899999998863 5799
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 411 MSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 411 ~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
|+. ..+++++++++++|++.+++.+
T Consensus 369 i~~--~~~~~~~~~~i~~l~~~l~~~~ 393 (394)
T PRK06836 369 LSY--CVDTETIERSLPAFEKLAKEYK 393 (394)
T ss_pred EEe--cCCHHHHHHHHHHHHHHHHHhc
Confidence 995 4799999999999999987653
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-17 Score=161.87 Aligned_cols=302 Identities=14% Similarity=0.182 Sum_probs=186.0
Q ss_pred hHHHHHHHHHHHhcCcCC-CCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchh-hhhcccCCcccc
Q 013204 77 KPSLDLAKELLEMFTASK-MAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTL-IAASLSGLPALH 154 (447)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~-~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~-~~~~~~~~~~~~ 154 (447)
+...++.+.+++++...+ .+.+++++||+++++.++..+. .+++++|+..+++++... ......|..
T Consensus 35 ~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~--------~~~~~vlv~~~~~~~~~~~~~a~~~g~~--- 103 (363)
T TIGR02326 35 IVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAV--------PKDGKLLVVINGAYGARIVQIAEYLGIP--- 103 (363)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcC--------CCCCeEEEEeCChhhHHHHHHHHHcCCc---
Confidence 344566777887774222 2479999999999999998653 233567777777777642 211111211
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
+..++.+.... .+++++++.+... ..+.++.+..+.+.+|.+.+ +++|.++|
T Consensus 104 ---------~~~v~~~~~~~-------------~d~~~l~~~l~~~--~~~~~v~~~~~~~~tG~~~~----i~~I~~l~ 155 (363)
T TIGR02326 104 ---------HHVVDTGEVEP-------------PDVVEVEAILAAD--PAITHIALVHCETTTGILNP----IEAVAKLA 155 (363)
T ss_pred ---------eEEEeCCCCCC-------------CCHHHHHHHHhhC--CCccEEEEEeecCCccccCc----HHHHHHHH
Confidence 11122211000 0137778777642 23345555555666788877 89999999
Q ss_pred HhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCcccceeEEEeChhHHHHhhhccCCCC-c-------
Q 013204 235 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSAYMPIGAILVSPEVSEVIHSQSNTLG-S------- 304 (447)
Q Consensus 235 ~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~-~------- 304 (447)
++||+++|+|++|+ +|.. +..... +.+|+++ ++|++.|+ .++|+++++++.++.+........ .
T Consensus 156 ~~~g~~livD~~~~-~g~~--~~~~~~--~~~D~~~~s~~K~l~~p-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (363)
T TIGR02326 156 HRHGKVTIVDAMSS-FGGI--PIDIAE--LHIDYLISSANKCIQGV-PGFGFVIARQAELAACKGNARSLSLDLYDQWRC 229 (363)
T ss_pred HHcCCEEEEEcccc-ccCc--ccchhh--cCccEEEecCccccccC-CcceEEEECHHHHHHhhcCCCceeecHHHHHHH
Confidence 99999999999986 5543 222222 3468775 46999876 578999999988776542110000 0
Q ss_pred c---CcCCCCCCcHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHhHhhccCCCceeeE-eeeeeEEEEEeecCCC
Q 013204 305 F---SHGFTYSGHPVSCAVAIEALKIYKER----NIVEQVNKIAPKFQDGVKAFSDSPIIGEI-RGTGLILGTEFADNKS 376 (447)
Q Consensus 305 ~---~~~~t~~~~~~~~~aa~a~l~~~~~~----~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-~~~g~~~~i~~~~~~~ 376 (447)
+ .....|+.+...+.+..++++.+..+ +..++.+++.+++++.|+++ +...+... ...+.+..+.+.....
T Consensus 230 ~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 308 (363)
T TIGR02326 230 MEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRAL-GFEPLLDDEIQSPIITSFYSPEDPD 308 (363)
T ss_pred HhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCceEEEEECCCCCC
Confidence 0 01123455666677767777665432 35577778888888888776 22222111 1122333444433110
Q ss_pred CCCCCCCCcchHHHHHHHHHHcCceEEeeC----CEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 377 PNEPFPPEWGIGAYFGAQCEKHGMLVRVSG----DNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g----~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
. ....+.+.|.++||.++++. +.+|+++...++.+++++++++|++++
T Consensus 309 ~---------~~~~v~~~L~~~gi~v~~g~~~~~~~iRi~~~~~~~~edv~~~l~~l~~~l 360 (363)
T TIGR02326 309 Y---------RFADFYQRLKEQGFVIYPGKVSQVDCFRIGNIGEVDAADITRLLTAIGKAM 360 (363)
T ss_pred C---------CHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 0 13457788999999998762 579999877789999999999998876
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-17 Score=163.46 Aligned_cols=351 Identities=16% Similarity=0.094 Sum_probs=194.9
Q ss_pred EEEecCCccccccCCCC-CHHHHHHHHHHHhcCC-----cccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhh
Q 013204 34 KYLDSLAGLWCTALGGS-EPRLVAAATAQLNTLP-----FYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSE 106 (447)
Q Consensus 34 ~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGse 106 (447)
..+||..+... +-.. .+.+.+++.+.+.... ..++...+..+....+++.+.+.+. ...+++|++++|+.+
T Consensus 31 ~~i~l~~g~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~ 108 (416)
T PRK09440 31 GAIMLGGGNPA--HIPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQS 108 (416)
T ss_pred CceeccCCCCC--ccCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChHH
Confidence 46888765321 1101 1255666666554311 1122222233444455555544322 246789999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceEEE-EcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCc-ccCCCCCCChhH
Q 013204 107 ANDTQVKLVWYYNNALGRPNKKKFIA-RQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHY-WRYAHPGETEEE 184 (447)
Q Consensus 107 A~~~Al~~~~~~~~~~~~~~~~~vi~-~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 184 (447)
|+..++++.... .++..++.|++ .+|.|+++...+............. ++.+.. +.+.
T Consensus 109 al~~~~~~l~~~---~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~-------- 168 (416)
T PRK09440 109 AFFYLFNLFAGR---RADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNI---------ELLPEGQFKYH-------- 168 (416)
T ss_pred HHHHHHHHHhcc---ccCCCCCeEEEecCCCchhhHHHhhccCceeeccccc---------ccccccccccC--------
Confidence 999998866310 00012357888 6999998864332211000000000 000000 0000
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCC
Q 013204 185 YSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSI 264 (447)
Q Consensus 185 ~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~ 264 (447)
.+++.++ + .++....++++|.|++| ...+.+.+++|.++|++|++++|.||+|..+ .....+.......
T Consensus 169 ---~d~~~l~--~---~~~~~~i~l~~P~NPTG--~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~-~~~~~~~~~~~~~ 237 (416)
T PRK09440 169 ---VDFEHLH--I---DEDTGAICVSRPTNPTG--NVLTDEELEKLDALARQHNIPLLIDNAYGPP-FPGIIFSEATPLW 237 (416)
T ss_pred ---CCHHHcc--c---CCCceEEEEecCCCCCC--ccCCHHHHHHHHHHHHHcCCcEEEeCCcccc-CCCcchhhcCccc
Confidence 0124444 1 22334555666665555 4568899999999999999999999999633 1111110000011
Q ss_pred CCCee---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-----hhcHHHH
Q 013204 265 KPDLV---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-----ERNIVEQ 336 (447)
Q Consensus 265 ~~d~v---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-----~~~~~~~ 336 (447)
.+.++ +|||. +.+++++|++++++++++.+... ......+.+.+++.++.++++.-. ...+...
T Consensus 238 ~~~vI~~~SfSK~-~~pGlRiG~~i~~~~l~~~~~~~-------~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~ 309 (416)
T PRK09440 238 NPNIILCMSLSKL-GLPGVRCGIVIADEEIIEALSNM-------NGIISLAPGRLGPAIAAEMIESGDLLRLSETVIRPF 309 (416)
T ss_pred cCCeEEEeccccc-CCCcceEEEEeCCHHHHHHHHHH-------HHHhccCCCcHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 22333 68995 44449999999999998887632 112234556777777777664211 0112334
Q ss_pred HHHHHHHHHHhHhhc-cCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-----C---
Q 013204 337 VNKIAPKFQDGVKAF-SDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-----G--- 406 (447)
Q Consensus 337 ~~~~~~~l~~~L~~l-~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----g--- 406 (447)
++++.+.+++.|++. ...+ .....+. |.++++++..... ....+.+.|.++||.+.++ +
T Consensus 310 ~~~r~~~~~~~L~~~l~~~~-~~~~~p~gg~fiw~~~~~~~~----------~~~~~~~~l~~~gV~v~pg~~F~~~~~~ 378 (416)
T PRK09440 310 YRQKVQLAIALLRRYLPDEP-CLIHKPEGAIFLWLWFKDLPI----------TTEELYQRLKARGVLVVPGHYFFPGLDE 378 (416)
T ss_pred HHHHHHHHHHHHHHhcccCC-eEEecCCCceEEEEECCCCCC----------CHHHHHHHHHHCCEEEechHhhCCCCcc
Confidence 445555566666543 2222 2223444 5666777654110 1345778889999999874 1
Q ss_pred ------CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 407 ------DNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 407 ------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
+.+|++ +..+++++++++++|++++++..+
T Consensus 379 ~~~~~~~~iRis--~~~~~~~l~~~i~~l~~~~~~~~~ 414 (416)
T PRK09440 379 DWPHAHQCIRMN--YVQDDEEIEKGIAILAEEVEKAYA 414 (416)
T ss_pred ccCCcCceEEEE--ecCCHHHHHHHHHHHHHHHHHHhh
Confidence 269999 546899999999999999876543
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.4e-18 Score=166.12 Aligned_cols=310 Identities=12% Similarity=0.128 Sum_probs=181.9
Q ss_pred CCChHHHHHHHHHHHhcC---cCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCC
Q 013204 74 RTTKPSLDLAKELLEMFT---ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGL 150 (447)
Q Consensus 74 ~~~~~~~~l~~~l~~~~~---~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~ 150 (447)
+.......+++.+.+.+. +.+++++++++|+++|++.++..+. ..++.|++.+|.|.+.........+.
T Consensus 96 G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~--------~pGD~Vlv~~P~Y~~f~~~~~~~~g~ 167 (447)
T PLN02607 96 GLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILA--------DPGDALLVPTPYYPGFDRDLRWRTGV 167 (447)
T ss_pred chHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhC--------CCCCEEEEcCCCCcchHHHHHhcCCc
Confidence 344455566666655443 2467899999999999999887653 34588999999998875433221222
Q ss_pred ccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhh--CCCcEE-EEEEccccCCCCCccCChhHH
Q 013204 151 PALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE--GPETIA-AFIAEPVIGAGGVIPPPATYF 227 (447)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~a-~vi~epv~~~~G~~~~~~~~l 227 (447)
.. ..+++... +.| ..+++.+++.+... ...+++ +++++|.|+.| .+++++.+
T Consensus 168 ~v------------v~v~~~~~----------~~f-~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG--~~~s~e~l 222 (447)
T PLN02607 168 KI------------VPIHCDSS----------NNF-QVTPQALEAAYQEAEAANIRVRGVLITNPSNPLG--ATVQRSVL 222 (447)
T ss_pred EE------------EEEeCCCC----------CCC-cCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcC--cccCHHHH
Confidence 11 11111100 000 01136666666432 123444 55566666665 56788999
Q ss_pred HHHHHHHHhcCCEEEEehhhcCCCccccccc--cc---cCCC-C-CC-ee---eecccCCCcccceeEEEe-ChhHHHHh
Q 013204 228 EKVQAVVKKYDILFIADEVICAFGRLGTMFG--CD---KYSI-K-PD-LV---SFAKALSSAYMPIGAILV-SPEVSEVI 295 (447)
Q Consensus 228 ~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~--~~---~~~~-~-~d-~v---~~sK~l~gg~~~~g~~~~-~~~~~~~~ 295 (447)
++|.++|++|++++|+||+|.++...+..+. .+ ..+. . ++ ++ ++||.++..++|+|+++. ++++++.+
T Consensus 223 ~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~~l~~~~ 302 (447)
T PLN02607 223 EDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTA 302 (447)
T ss_pred HHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCcceEEEEEEcCHHHHHHH
Confidence 9999999999999999999987533322221 11 1111 1 23 22 589999854489999998 66777766
Q ss_pred hhccCCCCccCcCCCC-CCcHHHHHHHHHHHHHHhhhcH--------HHHHHHHHHHHHHhHhhccCCCceeeEee-eee
Q 013204 296 HSQSNTLGSFSHGFTY-SGHPVSCAVAIEALKIYKERNI--------VEQVNKIAPKFQDGVKAFSDSPIIGEIRG-TGL 365 (447)
Q Consensus 296 ~~~~~~~~~~~~~~t~-~~~~~~~~aa~a~l~~~~~~~~--------~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-~g~ 365 (447)
... ..+ ..+.+++.++.+.|+ ++++ .+++++..+.+.+.|++. ++. ..++ -|.
T Consensus 303 ~~~----------~~~~~~s~~~q~~~~~~L~---d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~---gi~-~~~~~ag~ 365 (447)
T PLN02607 303 RRM----------SSFTLVSSQTQHLLASMLS---DEEFTENYIRTNRERLRKRYEMIVQGLRRA---GIE-CLKGNAGL 365 (447)
T ss_pred HHH----------hhcCCCCHHHHHHHHHHhC---CchhHHHHHHHHHHHHHHHHHHHHHHHHhC---CCC-cccCCeeE
Confidence 421 112 234455555544443 2222 233334444455555543 221 2333 467
Q ss_pred EEEEEeecCCCCCCCCCCCcchHHHHHHHHHH-cCceEEeeC-------CEEEEecCCC-CCHHHHHHHHHHHHHHHHHH
Q 013204 366 ILGTEFADNKSPNEPFPPEWGIGAYFGAQCEK-HGMLVRVSG-------DNIMMSPPFI-MSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 366 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~g-------~~iR~~~~~~-~t~e~i~~~~~~l~~~l~~~ 436 (447)
++++++....... .. .....+.+++++ .||.+.|+. +.+|++ +. .+++++++++++|.+++++.
T Consensus 366 fvw~~L~~~~~~~-~~----~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~--fa~~~~~~l~~gl~Ri~~~l~~~ 438 (447)
T PLN02607 366 FCWMNLSPLLETP-TR----EGELALWDSILREVKLNISPGSSCHCSEPGWFRVC--FANMSEDTLEVALKRIHRFMDRR 438 (447)
T ss_pred EEEEEchHhhcCC-Cc----hhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEEE--eccCCHHHHHHHHHHHHHHHHHH
Confidence 7788875321000 00 012346666664 699998752 579999 56 48999999999999999765
Q ss_pred HHHH
Q 013204 437 EERV 440 (447)
Q Consensus 437 ~~~~ 440 (447)
+.+-
T Consensus 439 ~~~~ 442 (447)
T PLN02607 439 KTAS 442 (447)
T ss_pred Hhhh
Confidence 5443
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.82 E-value=5e-18 Score=165.53 Aligned_cols=327 Identities=17% Similarity=0.218 Sum_probs=208.5
Q ss_pred EEecCCccccccCCCCCHHHHHHHHHHHhcCCccc-ccCcC----CChHHHHHHHHHHHhcCcCCC-CeEEEeCChhhHH
Q 013204 35 YLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYH-SFWNR----TTKPSLDLAKELLEMFTASKM-AKVFFTNSGSEAN 108 (447)
Q Consensus 35 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~----~~~~~~~l~~~l~~~~~~~~~-~~v~~~~sGseA~ 108 (447)
|+|-.+. |..++.|.+++.+...+..... +.... ..+...+..+.+++++. .+. ++++|++|+++++
T Consensus 2 Yld~~~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg-~~~~~~v~~~~~~t~a~ 74 (371)
T PF00266_consen 2 YLDNAGT------GPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLG-APPDEEVVFTSNGTEAL 74 (371)
T ss_dssp EEBTSSS-------B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHT-SSTTEEEEEESSHHHHH
T ss_pred EeeCCCc------cCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcC-Cccccccccccccchhh
Confidence 6775433 4578999999999876532211 11011 12344566777777774 445 7899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCCccch--hhhhc-ccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHH
Q 013204 109 DTQVKLVWYYNNALGRPNKKKFIARQKSYHGST--LIAAS-LSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEY 185 (447)
Q Consensus 109 ~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (447)
+.++..+.... .++++|++....|++.. ...+. ..+... ..++.+.. ...+
T Consensus 75 ~~~~~~l~~~~-----~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v------------~~i~~~~~-------~~~~-- 128 (371)
T PF00266_consen 75 NAVASSLLNPL-----KPGDEVLVTSNEHPSNRYPWEEIAKRKGAEV------------RVIPADPG-------GSLD-- 128 (371)
T ss_dssp HHHHHHHHHHG-----TTTCEEEEEESSHHHHHHHHHHHHHHTTEEE------------EEEEEGTT-------SSCS--
T ss_pred hhhhhcccccc-----ccccccccccccccccccccccccccchhhh------------cccccccc-------chhh--
Confidence 99999773210 34578888888887765 22221 112111 11111000 0001
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCC
Q 013204 186 STRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIK 265 (447)
Q Consensus 186 ~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~ 265 (447)
++++++.+. +++.+|++..+.+..|.+.| +++|.++|+++|+++++|-+|+ +|.. . ++.....
T Consensus 129 ----~~~~~~~l~----~~~~lv~~~~~~~~tG~~~p----i~~I~~~~~~~~~~~~vD~~~~-~g~~--~--id~~~~~ 191 (371)
T PF00266_consen 129 ----LEDLEEALN----PDTRLVSISHVENSTGVRNP----IEEIAKLAHEYGALLVVDAAQS-AGCV--P--IDLDELG 191 (371)
T ss_dssp ----HHHHHHHHH----TTESEEEEESBETTTTBBSS----HHHHHHHHHHTTSEEEEE-TTT-TTTS--S----TTTTT
T ss_pred ----hhhhhhhhc----cccceEEeecccccccEEee----eceehhhhhccCCceeEechhc-cccc--c--ccccccc
Confidence 377777775 57889999999999998888 9999999999999999999987 5544 2 2333345
Q ss_pred CCeeeec--ccCCCcccceeEEEeChhHHHHhhhccCCCCcc-----------CcCC---CCCCcHHHHHHHHHHHHHHh
Q 013204 266 PDLVSFA--KALSSAYMPIGAILVSPEVSEVIHSQSNTLGSF-----------SHGF---TYSGHPVSCAVAIEALKIYK 329 (447)
Q Consensus 266 ~d~v~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~---t~~~~~~~~~aa~a~l~~~~ 329 (447)
+|++++| | |.|+ .++|+++.+++.++.+.......... .... .-+.+...+.+..++++.+.
T Consensus 192 ~D~~~~s~~K-l~gp-~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~ 269 (371)
T PF00266_consen 192 ADFLVFSSHK-LGGP-PGLGFLYVRPEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLE 269 (371)
T ss_dssp ESEEEEESTS-TTSS-STEEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHH
T ss_pred cceeeecccc-cCCC-CchhhheehhhhhhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhh
Confidence 7988876 8 8887 68999999999988885321111000 0000 01345556666667777764
Q ss_pred h---hcHHHHHHHHHHHHHHhHhhccCCCcee--eEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEe
Q 013204 330 E---RNIVEQVNKIAPKFQDGVKAFSDSPIIG--EIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV 404 (447)
Q Consensus 330 ~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~--~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~ 404 (447)
+ +++.++..++.+++++.|+++....+.. .....+.++.+.+.... ...+.+.|.++||.++.
T Consensus 270 ~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------~~~~~~~L~~~~I~~~~ 337 (371)
T PF00266_consen 270 EIGIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSIVSFNLPGSD------------ADDVVKYLEERGIAVST 337 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEEEEETTSS------------HHHHHHHHHHHTEEEEE
T ss_pred ccccccchhhhhhHHHHHHhhhhcCCceeEeeecccccccceEEEeecCCC------------HHHHHHHHhhcCEEEec
Confidence 3 4456778888888888888873222211 12334556666664322 45688889999999987
Q ss_pred e-------------CCEEEEecCCCCCHHHHHHH
Q 013204 405 S-------------GDNIMMSPPFIMSPEEVDEL 425 (447)
Q Consensus 405 ~-------------g~~iR~~~~~~~t~e~i~~~ 425 (447)
+ ++.+|++++..+|++|||++
T Consensus 338 G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 338 GSACAGPSLDILGMGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp STTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred cCcccHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence 3 16899999999999999975
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-17 Score=164.70 Aligned_cols=343 Identities=11% Similarity=0.021 Sum_probs=194.2
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccC-cCCChHHHHHHHHHHHhcC--cCCCCeEEEeCChhhH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFW-NRTTKPSLDLAKELLEMFT--ASKMAKVFFTNSGSEA 107 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~~~~~~v~~~~sGseA 107 (447)
.+..++|+..+. ..++ .+|.+.+++.+.+.+........ ..+.....++.+.+++++. ...++++++++|++++
T Consensus 31 ~~~~~i~l~~~~--~~~~-~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~~~~~d~I~it~Ga~~a 107 (402)
T TIGR03542 31 PSADIIRLGIGD--TTQP-LPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRGRIDPEEIFISDGAKCD 107 (402)
T ss_pred CCCCeEEcCCCC--CCCC-CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhcCCCHHHEEECCCcHHH
Confidence 367889987764 3333 47888999888876531100000 1123334456666665431 2567899999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 108 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 108 ~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
+.....+. .+++.|++.+|+|.++.......+. +.....-+. ...+..+++... +.+.
T Consensus 108 l~~l~~l~---------~~gd~Vlv~~P~y~~~~~~~~~~g~-~~~~~~~~~-~~~~~~v~~~~~----------~~~~- 165 (402)
T TIGR03542 108 VFRLQSLF---------GSDNTVAVQDPVYPAYVDSNVMAGR-AGVLDDDGR-YSKITYLPCTKE----------NNFI- 165 (402)
T ss_pred HHHHHHhc---------CCCCEEEEeCCCCcchHHHHHHcCC-ccccccccc-cceEEEeecchh----------hCCC-
Confidence 98753332 2346899999999988654443322 100000000 001111221100 0000
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc-cccc-ccCCCC
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT-MFGC-DKYSIK 265 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~-~~~~-~~~~~~ 265 (447)
.++++ .++..+++++.|.|++| .+.+.+.+++|.++|++|++++|.||+|..|...+. .... ...+..
T Consensus 166 ---~~~~~-----~~~~~~i~l~nP~NPTG--~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~ 235 (402)
T TIGR03542 166 ---PDLPE-----EPKIDIIYLCSPNNPTG--TVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAK 235 (402)
T ss_pred ---CCccc-----cCCceEEEEeCCCCCCC--ccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCc
Confidence 11111 02234455566655555 567889999999999999999999999998743331 1111 111111
Q ss_pred CCe---eeecccCCCcccceeEEEeChhHH--------HHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHH--Hh-hh
Q 013204 266 PDL---VSFAKALSSAYMPIGAILVSPEVS--------EVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKI--YK-ER 331 (447)
Q Consensus 266 ~d~---v~~sK~l~gg~~~~g~~~~~~~~~--------~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~--~~-~~ 331 (447)
..+ -+|||.++.+++|+|+++++++++ ..+.. . ......+.+.+++.++.+.++. .. -.
T Consensus 236 ~~vi~~~SfSK~~g~pGlRiG~~i~~~~l~~~~~~~~~~~~~~------~-~~~~~~~~s~~~q~~~~~~l~~~~~~~~~ 308 (402)
T TIGR03542 236 ECAIEFRSFSKTAGFTGVRLGWTVVPKELTYADGHSVIQDWER------R-QCTKFNGASYPVQRAAEAAYAGEGLQPIL 308 (402)
T ss_pred ccEEEEecCccccCCCCcceEEEEecHHHhhcchhhHHHHHHH------H-hhhcccCCCHHHHHHHHHHHcCcchhHHH
Confidence 122 268999975449999999998876 22211 0 0011123456677666555541 10 11
Q ss_pred cHHHHHHHHHHHHHHhHhhccCCCceeeEee-eeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEeeC---
Q 013204 332 NIVEQVNKIAPKFQDGVKAFSDSPIIGEIRG-TGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVSG--- 406 (447)
Q Consensus 332 ~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~g--- 406 (447)
+....++++.+.+.+.|++. + .....+ .|.++.+.+..... ...+...|+ +.||.+.++.
T Consensus 309 ~~~~~~~~~~~~~~~~L~~~---~-~~~~~~~~~~f~~v~l~~~~~-----------~~~l~~~l~~~~gv~v~pg~~f~ 373 (402)
T TIGR03542 309 EAISYYMENARILRKALEAA---G-FKVYGGEHAPYLWVKTPEGIS-----------SWDFFDFLLYQYHVVGTPGSGFG 373 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhc---C-ceecCCCceeEEEEECCCCCC-----------HHHHHHHHHHhCCEEEeCchhhC
Confidence 22344555556666666654 2 112233 35577777653211 234677766 5799998752
Q ss_pred ----CEEEEecCCCCCHHHHHHHHHHHHHH
Q 013204 407 ----DNIMMSPPFIMSPEEVDELISKYGKA 432 (447)
Q Consensus 407 ----~~iR~~~~~~~t~e~i~~~~~~l~~~ 432 (447)
+.+|++ +..+++++++++++|+++
T Consensus 374 ~~~~~~iRis--~~~~~~~l~~~l~~l~~~ 401 (402)
T TIGR03542 374 PSGEGFVRFS--AFGKRENIVEACERIKEA 401 (402)
T ss_pred CCCCCEEEEE--ecCCHHHHHHHHHHHHhh
Confidence 469999 556899999999999875
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-17 Score=160.90 Aligned_cols=324 Identities=14% Similarity=0.140 Sum_probs=191.5
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQ 111 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~A 111 (447)
....+||..+. ++++ .+|.+.+++.+.+.....+ +.....+|.+.+++++ ..++++|++++|+++++..+
T Consensus 21 ~~~~i~l~~~~--n~~~-~~~~~~~a~~~~~~~~~~Y------~~~~~~~Lr~aia~~~-~v~~~~I~it~G~~~~i~~~ 90 (360)
T PRK07392 21 PDAILDFSASI--NPLG-PPESVIAAIQSALSALRHY------PDPDYRELRLALAQHH-QLPPEWILPGNGAAELLTWA 90 (360)
T ss_pred cccEEEeCCcC--CCCC-CCHHHHHHHHHHHHHhhcC------CCcCHHHHHHHHHHHh-CcChhhEEECCCHHHHHHHH
Confidence 34678987553 5666 6789999988777542211 1122457778888876 45778999999999999988
Q ss_pred HHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHH
Q 013204 112 VKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191 (447)
Q Consensus 112 l~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (447)
++.+. + .+.|++.+|+|.+........+.... .++...... .+. + ..
T Consensus 91 ~~~l~--------~-g~~vlv~~P~y~~~~~~~~~~g~~~~-------------~v~~~~~~~--~~~-~--------~~ 137 (360)
T PRK07392 91 GRELA--------Q-LRAVYLITPAFGDYRRALRAFGATVK-------------ELPLPLDQP--SPG-L--------TL 137 (360)
T ss_pred HHHhC--------C-CCeEEEECCCcHHHHHHHHHcCCeEE-------------EEecccccC--Ccc-c--------cc
Confidence 87642 2 35899999999888655554332211 111100000 000 0 02
Q ss_pred HHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccc-cccCCCCCCee-
Q 013204 192 NLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFG-CDKYSIKPDLV- 269 (447)
Q Consensus 192 ~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~-~~~~~~~~d~v- 269 (447)
+++++.... +.....++++|.|++| .+. + .++|.++++++++ +|+||+|.+|...+.... .......+.++
T Consensus 138 ~~~~~~~~~-~~~~~~~l~nP~NPTG-~~~-~---~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~ 210 (360)
T PRK07392 138 RLQTLPPQL-TPNDGLLLNNPHNPTG-KLW-S---REAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLII 210 (360)
T ss_pred CHHHHHHhc-cCCCEEEEeCCCCCCC-CCc-C---HHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEE
Confidence 233333222 2334466666766655 444 3 4567777888885 666999998854442111 11112123333
Q ss_pred --eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHH
Q 013204 270 --SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVEQVNKIAPKFQD 346 (447)
Q Consensus 270 --~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~~~~~~~~~l~~ 346 (447)
+|||.++-+++++|++++++++++.+... . ..++.+.+++.++.++++... .+...+.++++.+++.+
T Consensus 211 i~S~SK~~~l~GlRiG~~v~~~~~~~~~~~~-------~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~ 281 (360)
T PRK07392 211 LRSLTKFYSLPGLRLGYAIAHPDRLQRWQQW-------R--DPWPVNGLAAAAAIAALADRDFQQQTWAWLPPAREALFQ 281 (360)
T ss_pred EEechhhhcCCchheeeeeCCHHHHHHHHhh-------C--CCCCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 68999883338999999999998887531 1 245667888888877775211 11223445555566666
Q ss_pred hHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHH-HHcCceEEeeC-------CEEEEecCCCCC
Q 013204 347 GVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQC-EKHGMLVRVSG-------DNIMMSPPFIMS 418 (447)
Q Consensus 347 ~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~g-------~~iR~~~~~~~t 418 (447)
.|+.+. .+....+.|.++.+.+.. . ...+.+.+ .++||.+.++. +.+|++ ..+
T Consensus 282 ~L~~~~---~~~~~~~~~~fl~~~~~~-~------------~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~---~~~ 342 (360)
T PRK07392 282 GLASLP---GLTPLPSAANFLLVQSQG-S------------ALQLQEKLLQQHRILIRDCLSFPELGDRYFRVA---VRT 342 (360)
T ss_pred HHHhCC---CcEECCCCCCEEEEEcCC-C------------HHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEE---eCC
Confidence 665542 222233456666665532 1 33466665 56799998762 469999 334
Q ss_pred HHHHHHHHHHHHHHH
Q 013204 419 PEEVDELISKYGKAL 433 (447)
Q Consensus 419 ~e~i~~~~~~l~~~l 433 (447)
.++.+++.+.|++.+
T Consensus 343 ~~~~~~l~~al~~~~ 357 (360)
T PRK07392 343 EAENQRLLEALAAIL 357 (360)
T ss_pred HHHHHHHHHHHHHHh
Confidence 555566666666544
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-17 Score=166.64 Aligned_cols=311 Identities=13% Similarity=0.098 Sum_probs=180.5
Q ss_pred ChHHHHHHHHHHHhcC---cCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcc
Q 013204 76 TKPSLDLAKELLEMFT---ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPA 152 (447)
Q Consensus 76 ~~~~~~l~~~l~~~~~---~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~ 152 (447)
.+....+++.+.+.+. ..++++|++++|+++|++.++..+. ..++.|++.+|.|.+.........|...
T Consensus 97 ~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~--------~pGD~Vlv~~P~Y~~~~~~~~~~~G~~v 168 (496)
T PLN02376 97 KKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLA--------DPGDVFLIPSPYYAAFDRDLRWRTGVEI 168 (496)
T ss_pred HHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhC--------CCCCEEEECCCCccchHHHHHhhCCCEE
Confidence 3444555555554432 1467899999999999999998763 3457899999999888643322222211
Q ss_pred ccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhh--CCCcEE-EEEEccccCCCCCccCChhHHHH
Q 013204 153 LHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE--GPETIA-AFIAEPVIGAGGVIPPPATYFEK 229 (447)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~a-~vi~epv~~~~G~~~~~~~~l~~ 229 (447)
..+++... +.+. .+++.+++.+... ...+++ +++++|.|++| .+.+.+.+++
T Consensus 169 ------------v~v~~~~~----------~~~~-~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG--~~~s~e~l~~ 223 (496)
T PLN02376 169 ------------IPVPCSSS----------DNFK-LTVDAADWAYKKAQESNKKVKGLILTNPSNPLG--TMLDKDTLTN 223 (496)
T ss_pred ------------EEEeCCCC----------ccCc-CCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCC--ccCCHHHHHH
Confidence 11222100 0000 0124555443221 112344 55566666665 5668899999
Q ss_pred HHHHHHhcCCEEEEehhhcCCCccccccc-c-cc---CC---CCCCe----eeecccCCCcccceeEEEeC-hhHHHHhh
Q 013204 230 VQAVVKKYDILFIADEVICAFGRLGTMFG-C-DK---YS---IKPDL----VSFAKALSSAYMPIGAILVS-PEVSEVIH 296 (447)
Q Consensus 230 l~~l~~~~g~~li~DEv~~g~g~~g~~~~-~-~~---~~---~~~d~----v~~sK~l~gg~~~~g~~~~~-~~~~~~~~ 296 (447)
|.++|++|++++|+||+|..+...+..+. . +. +. +.++. -+|||.++.+++++|++++. +.+.+.+.
T Consensus 224 L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~~~~~ 303 (496)
T PLN02376 224 LVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCAR 303 (496)
T ss_pred HHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECCHHHHHHHH
Confidence 99999999999999999998754443221 1 11 11 12342 26899987544999999984 55666543
Q ss_pred hccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh-hc----HHHHHHHHHHHHHHhHhhccCCCceeeEe-eeeeEEEEE
Q 013204 297 SQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE-RN----IVEQVNKIAPKFQDGVKAFSDSPIIGEIR-GTGLILGTE 370 (447)
Q Consensus 297 ~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-~~----~~~~~~~~~~~l~~~L~~l~~~~~~~~~~-~~g~~~~i~ 370 (447)
.. . .....+.+++.++.+.|+.-+- ++ ..++++++.+.+.+.|++. ++. ... .-|.+++++
T Consensus 304 ~~-------~--~~~~vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~---gi~-~~~~~aG~flwi~ 370 (496)
T PLN02376 304 KM-------S--SFGLVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKA---DIA-CLTSNAGLFAWMD 370 (496)
T ss_pred HH-------h--hcCCCCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCc-ccCCCceEEEEEE
Confidence 21 1 1112355666655555531110 11 1233444445555555543 221 222 345778888
Q ss_pred eecCCCCCCCCCCCcchHHHHHHHHHH-cCceEEeeC-------CEEEEecCCC-CCHHHHHHHHHHHHHHHHHHHH
Q 013204 371 FADNKSPNEPFPPEWGIGAYFGAQCEK-HGMLVRVSG-------DNIMMSPPFI-MSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~g-------~~iR~~~~~~-~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
+.........+ .....+.+.+++ .||.+.|+. +.+|++ +. .+++++++++++|++++.+.++
T Consensus 371 l~~~~~~~~~~----~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~--fa~~~~~~l~~al~rl~~~l~~~~~ 441 (496)
T PLN02376 371 LRHLLRDRNSF----ESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRIC--FANMDDDTLHVALGRIQDFVSKNKN 441 (496)
T ss_pred chhhhccCCch----hHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEEE--eeCCCHHHHHHHHHHHHHHHHHhhh
Confidence 75421110000 012346677765 599999852 469999 55 5889999999999999975543
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8e-18 Score=165.70 Aligned_cols=341 Identities=11% Similarity=0.049 Sum_probs=191.4
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcC-----CcccccCcCCChHHHHHHHHHHHhcCc-----CCCCeEEE-
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTL-----PFYHSFWNRTTKPSLDLAKELLEMFTA-----SKMAKVFF- 100 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~~v~~- 100 (447)
+...+|+..|.... +. .++.+.+++.+++... ...|. +.....++.+.+++++.. ..+++|++
T Consensus 28 ~~~~i~l~~g~~~~-~~-~~~~~~~~~~~a~~~~~~~~~~~~Y~----~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~ 101 (404)
T PTZ00376 28 SPSKVNLGIGAYRD-EN-GKPYVLESVRKAEKIIAEKNLDKEYL----PIEGLQSFIEAAQKLLFGEASYALAEKRIATV 101 (404)
T ss_pred CcccEecccceeEC-CC-CCEehhhHHHHHHHHhccccCCCCCC----CCCCCHHHHHHHHHHhcCCCccccccCeEEEe
Confidence 45678887664211 12 2334455555554211 11122 233344555555555421 25568884
Q ss_pred -eCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCC
Q 013204 101 -TNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPG 179 (447)
Q Consensus 101 -~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (447)
+++|++|...++.++... . ..++.|++.+|+|+++.......+.... .++..+.
T Consensus 102 ~t~G~~~al~~~~~~l~~~----~-~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~-------------~v~l~~~------- 156 (404)
T PTZ00376 102 QALSGTGALRLGFEFLKRF----L-PAGTTVYVSNPTWPNHVNIFKSAGLNVK-------------EYRYYDP------- 156 (404)
T ss_pred eccCcchHHHHHHHHHHHh----c-CCCCEEEEcCCCchhHHHHHHHcCCcee-------------eccccCc-------
Confidence 889999999887654322 1 2347899999999998655554333221 1111000
Q ss_pred CChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc--cc
Q 013204 180 ETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT--MF 257 (447)
Q Consensus 180 ~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~--~~ 257 (447)
+.+ ..+++.+++.+....+++...++.+|.|++| ...+.+.+++|.++|++|++++|.||+|.+|...+. ..
T Consensus 157 ---~~~-~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG--~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~ 230 (404)
T PTZ00376 157 ---KTK-GLDFDGMLEDLRTAPNGSVVLLHACAHNPTG--VDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDA 230 (404)
T ss_pred ---ccC-CcCHHHHHHHHHhCCCCCEEEEeCCCCCCCC--CCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHH
Confidence 000 0113667777654333334344455656665 566889999999999999999999999998754321 00
Q ss_pred -ccc-cCCCCCCee---eecccCCCcccceeEE---EeChhHHHHhhhccCCCCccCcCCCC-CCcHHHHHHHHHHHHHH
Q 013204 258 -GCD-KYSIKPDLV---SFAKALSSAYMPIGAI---LVSPEVSEVIHSQSNTLGSFSHGFTY-SGHPVSCAVAIEALKIY 328 (447)
Q Consensus 258 -~~~-~~~~~~d~v---~~sK~l~gg~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~t~-~~~~~~~~aa~a~l~~~ 328 (447)
... .....+.++ +|||.++..++|+|++ ++++++++.+...- ... ...++ +.+++++.++.++++.-
T Consensus 231 ~~~~~~~~~~~~vi~i~SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~---~~~-~~~~~~~~~~~~q~~~~~~l~~~ 306 (404)
T PTZ00376 231 YAIRLFAERGVEFLVAQSFSKNMGLYGERIGALHIVCANKEEAANVLSQL---KLI-IRPMYSSPPIHGARIADRILSDP 306 (404)
T ss_pred HHHHHHHhcCCcEEEEEeCCCcccccccccceEEEEeCCHHHHHHHHHHH---HHH-HhhhcCCCchHHHHHHHHHhCCH
Confidence 111 111112333 6899998433999998 56777555442110 000 11223 33556777776666421
Q ss_pred h--------hhcHHHHHHHHHHHHHHhHhhccCCC-ceeeEeeeeeE-EEEEeecCCCCCCCCCCCcchHHHHHHHHHHc
Q 013204 329 K--------ERNIVEQVNKIAPKFQDGVKAFSDSP-IIGEIRGTGLI-LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH 398 (447)
Q Consensus 329 ~--------~~~~~~~~~~~~~~l~~~L~~l~~~~-~~~~~~~~g~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 398 (447)
+ -.+..++++++.+.+.+.|+++ ..+ ......+.|.+ +++.+. ..+.++|+++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~~~~~p~gg~f~~~~~~----------------~~~~~~L~~~ 369 (404)
T PTZ00376 307 ELRAEWLSELKEMSGRIQNMRQLLYDELKAL-GSPGDWEHIINQIGMFSFTGLT----------------KEQVERLIEK 369 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCcccccccCceEEEecCCC----------------HHHHHHHHHh
Confidence 1 0122345566666676777665 211 11222344443 334331 2366777766
Q ss_pred -CceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 399 -GMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 399 -Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
||.+.+++ |++.. ..+++++++++++|++++.
T Consensus 370 ~~v~v~p~~---Ris~~-~~~~~~~~~~~~~l~~~~~ 402 (404)
T PTZ00376 370 YHIYLLDNG---RISVA-GLTSKNVDYVAEAIHDVVR 402 (404)
T ss_pred CCEeecCCC---eEEEe-ccCHHhHHHHHHHHHHHHh
Confidence 99988875 88832 2799999999999998865
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-17 Score=161.62 Aligned_cols=336 Identities=14% Similarity=0.126 Sum_probs=188.3
Q ss_pred CCCCHHHHHHHHHHHhcCCcccc----cCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcC
Q 013204 48 GGSEPRLVAAATAQLNTLPFYHS----FWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALG 123 (447)
Q Consensus 48 G~~~p~v~~a~~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~ 123 (447)
|+..|.+++++.+........+. ......+...++.+++++.+ +.+++++++|+++++..++....
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~---g~~~i~~~~g~t~al~~~l~~~~------- 80 (361)
T cd06452 11 GRLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFL---GMDEARVTPGAREGKFAVMHSLC------- 80 (361)
T ss_pred CCCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHc---CCceEEEeCCHHHHHHHHHHHhc-------
Confidence 56788999998887743222111 01112356788999999887 34789999999999999998653
Q ss_pred CCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCC-
Q 013204 124 RPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGP- 202 (447)
Q Consensus 124 ~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~- 202 (447)
.++++|++..++|.+.... ....|... ..++...... + ..+++++++.+.....
T Consensus 81 -~~gd~Vl~~~~~~~~~~~~-~~~~g~~~------------~~v~~~~~~~----------~-~~d~~~l~~~l~~~~~~ 135 (361)
T cd06452 81 -EKGDWVVVDGLAHYTSYVA-AERAGLNV------------REVPNTGHPE----------Y-HITPEGYAEVIEEVKDE 135 (361)
T ss_pred -CCCCEEEEcCCcchHHHHH-HHhcCCEE------------EEEecCCCCC----------c-ccCHHHHHHHHHHHhhc
Confidence 2346677766665544322 22222111 1111110000 0 0113667776653211
Q ss_pred --CcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCc
Q 013204 203 --ETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSA 278 (447)
Q Consensus 203 --~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg 278 (447)
.++++|+++..++..|...+ +++|.++|++||+++|+||+|. +|.. .+....++ .|++ +++|.++++
T Consensus 136 ~~~~~~lv~l~~p~n~tG~~~~----~~~i~~~~~~~~~~vivD~a~~-~g~~--~~~~~~~~--~d~~~~s~~K~l~~~ 206 (361)
T cd06452 136 FGKPPALALLTHVDGNYGNLHD----AKKIAKVCHEYGVPLLLNGAYT-VGRM--PVSGKELG--ADFIVGSGHKSMAAS 206 (361)
T ss_pred cCCCceEEEEECCCCCCeeecc----HHHHHHHHHHcCCeEEEECCcc-cCCc--CCCHHHcC--CCEEEecCCccccCC
Confidence 24566666666666676655 8999999999999999999997 4322 12222233 4655 567999876
Q ss_pred ccceeEEEeChhHHHHhhhccCCCCccCcCCCC--CCcHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHhHhhccCCC
Q 013204 279 YMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTY--SGHPVSCAVAIEALKIYKE-RNIVEQVNKIAPKFQDGVKAFSDSP 355 (447)
Q Consensus 279 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~~~aa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~ 355 (447)
.++|++++++++++.+........ ......+ +..+..+.+++++++...+ -+...+..++.+++++.|+++++..
T Consensus 207 -~~~G~l~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~l~g~~ 284 (361)
T cd06452 207 -APIGVLATTEEWADIVFRTSQMFK-IKEVELLGCTLRGAPLVTLMASFPHVKERVKRWDEEVEKARWFVAELEKIEGIK 284 (361)
T ss_pred -CCeEEEEECHHHHHHHhccccccc-cceeeeeccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 589999999999888754321100 0000001 1112233344455543321 1122222334567777777663322
Q ss_pred ceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC--CEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 356 IIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--DNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 356 ~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g--~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
++....+...++.++...-... ..........+.+.|+++||.....+ +.+|++.+ .+++++++.++++|++++
T Consensus 285 v~~~~~~~~n~~~~~~~~~~~~---~~~~~~~~~~~~~~L~~~gI~~~~~~~~~~~ri~~~-g~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 285 QLGEKPKNHDLMFFETPSFDEI---AKKHKRRGYFLYSELKKRGIHGIKPGLTRYFKLSTY-GLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred EECCCCCCCceEEEEcCCcchh---hhhccccchhHHHHHHHcCceEEcCCCceEEEEEec-CCCHHHHHHHHHHHHHHh
Confidence 2211122333444433210000 00000012358889999999965433 45888863 479999999999998654
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.2e-17 Score=147.21 Aligned_cols=330 Identities=16% Similarity=0.104 Sum_probs=200.3
Q ss_pred CHHHHHHHHHHHhcCCc-ccccCcCCChHHHHHHHHHHHhcCc-CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcc
Q 013204 51 EPRLVAAATAQLNTLPF-YHSFWNRTTKPSLDLAKELLEMFTA-SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKK 128 (447)
Q Consensus 51 ~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~ 128 (447)
.++..+|+.+++..+-+ +|....+......+.++.+.+.+.. ...++|+.|+|-++|++.|+.++- ..+.
T Consensus 80 s~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA--------~p~a 151 (447)
T KOG0259|consen 80 SQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLA--------NPGA 151 (447)
T ss_pred CHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhc--------CCCC
Confidence 34778888888865422 2222233445555666665555432 366799999999999999999652 3457
Q ss_pred eEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEE
Q 013204 129 KFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAF 208 (447)
Q Consensus 129 ~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~v 208 (447)
.|++..|+|.-+...+.. .+.... .+++ .|..+++ .+++.+|.++. .+++|.+
T Consensus 152 NILlPrPGfp~Y~~~a~~-~~lEVR--~ydl-----------------LPe~~we----IDL~~veal~D---ENT~Aiv 204 (447)
T KOG0259|consen 152 NILLPRPGFPLYDTRAIY-SGLEVR--YYDL-----------------LPEKDWE----IDLDGVEALAD---ENTVAIV 204 (447)
T ss_pred ceecCCCCCchHHHhhhh-cCceeE--eecc-----------------cCcccce----echHHHHHhhc---cCeeEEE
Confidence 899999999766433322 111111 1111 1112221 22466777665 4678899
Q ss_pred EEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccc-ccc-CCCCCCeee--ecccCCCcccceeE
Q 013204 209 IAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFG-CDK-YSIKPDLVS--FAKALSSAYMPIGA 284 (447)
Q Consensus 209 i~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~-~~~-~~~~~d~v~--~sK~l~gg~~~~g~ 284 (447)
|++|.|+.|+ +++.+-|++|+++|+++|+++|.||||..+.+-+.+|. ... ..+.|-+.+ +||+.--++|++|+
T Consensus 205 viNP~NPcGn--Vys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VPGWRlGW 282 (447)
T KOG0259|consen 205 VINPNNPCGN--VYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVPGWRLGW 282 (447)
T ss_pred EeCCCCCCcc--cccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeecccccccccCCceeee
Confidence 9999999884 56889999999999999999999999987755555543 222 234565543 67976665599999
Q ss_pred EEeChh--H------HHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcH----HHHHHHHHHHHHHhHhhcc
Q 013204 285 ILVSPE--V------SEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNI----VEQVNKIAPKFQDGVKAFS 352 (447)
Q Consensus 285 ~~~~~~--~------~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~----~~~~~~~~~~l~~~L~~l~ 352 (447)
++.... + .+.+.. +.+. +..+..+-++|.-..|+.- .+++ ...++.+.+.-.+.|+++
T Consensus 283 i~~hD~~gvf~~~~~~q~~~~-------~~~~-~~~p~TiiQ~AlP~IL~kT-p~efF~k~~~~lk~na~l~y~~Lk~I- 352 (447)
T KOG0259|consen 283 IALHDPRGVFRDTKVVQGIKN-------FLDI-IPGPATIIQGALPDILEKT-PEEFFDKKLSFLKSNADLCYSRLKDI- 352 (447)
T ss_pred EEEecccccccchHHHHHHHH-------HHhc-cCCccHhHHHHhHHHHHhC-hHHHHHHHHHHHHhhHHHHHHHHhcC-
Confidence 876431 2 223321 1111 2233334444333333311 1222 244455555555666665
Q ss_pred CCCcee-eEeeeeeEEE-EEeecCCCCCCCCCCCcchHHHHHHHH-HHcCceEEeeC-----CEEEEecCCCCCHHHHHH
Q 013204 353 DSPIIG-EIRGTGLILG-TEFADNKSPNEPFPPEWGIGAYFGAQC-EKHGMLVRVSG-----DNIMMSPPFIMSPEEVDE 424 (447)
Q Consensus 353 ~~~~~~-~~~~~g~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~g-----~~iR~~~~~~~t~e~i~~ 424 (447)
|.+. .++.+|.++. +.+.-. .+++... ...|+++| .++.+++-|+- +.+|++ +....+.+++
T Consensus 353 --P~l~cp~kPeg~mylmv~l~~s-----~~~~~~d-D~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~--i~~~~~~lee 422 (447)
T KOG0259|consen 353 --PCLTCPVKPEGCMYLMVKLNLS-----LFPDIED-DVDFCQKLAREESVICLPGQAFGLKNWLRIV--ITVEEEMLEE 422 (447)
T ss_pred --CCcccCcCCCcceEEEeccchh-----hhccccc-cHHHHHHHhhhcceEEeccccccCCCeEEEE--EccChHHHHH
Confidence 5444 5677777653 222111 1111111 22355555 56778887762 789999 8899999999
Q ss_pred HHHHHHHHHHHHH
Q 013204 425 LISKYGKALKATE 437 (447)
Q Consensus 425 ~~~~l~~~l~~~~ 437 (447)
+.+||++...+-.
T Consensus 423 a~~Rik~Fc~RH~ 435 (447)
T KOG0259|consen 423 AFSRIKEFCDRHS 435 (447)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999987654
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-17 Score=162.23 Aligned_cols=323 Identities=14% Similarity=0.166 Sum_probs=191.9
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcC-----CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCC
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNR-----TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGR 124 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~ 124 (447)
.++.+.+++.+.+.+.......... ......++.+.+++++.....++++|++|+++++..++....
T Consensus 12 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~-------- 83 (376)
T TIGR01977 12 KPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGLL-------- 83 (376)
T ss_pred CCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhcc--------
Confidence 4678999998888763211000000 124566788888888743334589999999999998887642
Q ss_pred CCcceEEEEcCCCccchhhh--h-cccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhC
Q 013204 125 PNKKKFIARQKSYHGSTLIA--A-SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEG 201 (447)
Q Consensus 125 ~~~~~vi~~~~~yhg~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~ 201 (447)
..++.|++....|+...... + ...|... ..++....+ ..+.+++++.+.
T Consensus 84 ~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~------------~~v~~~~~~-------------~~d~~~l~~~~~--- 135 (376)
T TIGR01977 84 KEGDHVITTPMEHNSVARPLECLKEQIGVEI------------TIVKCDNEG-------------LISPERIKRAIK--- 135 (376)
T ss_pred CCCCEEEECcchhhHHHHHHHHHHHHcCcEE------------EEEecCCCC-------------CcCHHHHHHhcC---
Confidence 23467777666654432111 1 1111111 111111000 011366776663
Q ss_pred CCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec--ccCCCcc
Q 013204 202 PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAY 279 (447)
Q Consensus 202 ~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l~gg~ 279 (447)
+++++|+++.+++.+|.+.+ +++|.++|++||+++|+|++++ +|... +... ...+|++++| |.++++
T Consensus 136 -~~~~~v~~~~~~n~tG~~~~----~~~i~~l~~~~~~~livD~a~~-~g~~~--~~~~--~~~~D~~~~s~~K~l~~p- 204 (376)
T TIGR01977 136 -TNTKLIVVSHASNVTGTILP----IEEIGELAQENGIFFILDAAQT-AGVIP--IDMT--ELAIDMLAFTGHKGLLGP- 204 (376)
T ss_pred -CCCeEEEEECCCCCccccCC----HHHHHHHHHHcCCEEEEEhhhc-cCccC--CCch--hcCCCEEEecccccccCC-
Confidence 24567777777777887777 8999999999999999999997 54432 2222 2347887665 988875
Q ss_pred cceeEEEeChhH-HHHhhhccCCCCc--cC-------cCCCCCCcHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHH
Q 013204 280 MPIGAILVSPEV-SEVIHSQSNTLGS--FS-------HGFTYSGHPVSCAVAIEALKIYKER---NIVEQVNKIAPKFQD 346 (447)
Q Consensus 280 ~~~g~~~~~~~~-~~~~~~~~~~~~~--~~-------~~~t~~~~~~~~~aa~a~l~~~~~~---~~~~~~~~~~~~l~~ 346 (447)
.+.|+++.+++. +..+......... +. .....+.+...+.+..++++.+.+. ...++.+++.+++++
T Consensus 205 ~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~ 284 (376)
T TIGR01977 205 QGTGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLN 284 (376)
T ss_pred CCceEEEEcCCcCcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 467777776653 2221110000000 00 0011134455666666778876653 356777778888888
Q ss_pred hHhhccCCCceee--EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc-CceEEee---------------CCE
Q 013204 347 GVKAFSDSPIIGE--IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH-GMLVRVS---------------GDN 408 (447)
Q Consensus 347 ~L~~l~~~~~~~~--~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~---------------g~~ 408 (447)
.|+++....+... ....+.++.+.+.... ...+.+.|.++ ||.+..+ .+.
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~ 352 (376)
T TIGR01977 285 GLREINKVKIYGPADPANRVGVVSFTVEGID------------SEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGT 352 (376)
T ss_pred HHhcCCCeEEeCCCCccccCCeEEEEECCCC------------HHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCe
Confidence 8876532222211 1112345555543211 34578888887 8887642 256
Q ss_pred EEEecCCCCCHHHHHHHHHHHHH
Q 013204 409 IMMSPPFIMSPEEVDELISKYGK 431 (447)
Q Consensus 409 iR~~~~~~~t~e~i~~~~~~l~~ 431 (447)
+|++++..+|++||++++++|++
T Consensus 353 iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 353 IRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred EEEecCCCCCHHHHHHHHHHHhh
Confidence 99999999999999999999975
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.7e-19 Score=159.22 Aligned_cols=355 Identities=19% Similarity=0.195 Sum_probs=237.3
Q ss_pred eEEEEecCcEEEeCCCCEEEecCCccccccCCC-CCHHHHHHHHHHHhcCCcc---cccCcCCChHHHHHHHHHHHhcCc
Q 013204 17 LVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLPFY---HSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 17 ~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
.++.+.-+..++ +||+.+++|.|. |.||. .++++.+.+...+.+++.+ .+.|.++-+.+.++++.+++.+
T Consensus 79 ~v~e~~~~~~~~-i~G~~~~N~aS~---NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~-- 152 (467)
T KOG1358|consen 79 PVLESVMLPHVT-IDGKDVLNFASA---NFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFM-- 152 (467)
T ss_pred cccccccCCceE-ecCceeecccch---hhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhh--
Confidence 447777778777 899999999877 55554 6899999999999886433 3345678889999999999997
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCc
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHY 172 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
+.++.++.+-|-.+++.++.+.. ++..|++.+-.-+-...-++.++.+..
T Consensus 153 -G~E~aivYs~gF~ti~S~ipafs---------KrGDIi~~de~~nfaIq~GlqlSRS~i-------------------- 202 (467)
T KOG1358|consen 153 -GTEDAIVYSYGFSTIESAIPAFS---------KRGDIIFVDEAVNFAIQKGLQLSRSTI-------------------- 202 (467)
T ss_pred -CCcceeeeccccchhhhcchhhh---------ccCcEEEEehhhhHHHHHHHhhhhhee--------------------
Confidence 55556667778889998888663 345666665544333333333332211
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHhhC------C---CcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEE
Q 013204 173 WRYAHPGETEEEYSTRLANNLEDLILKEG------P---ETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIA 243 (447)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~le~~l~~~~------~---~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~ 243 (447)
..|.+++++++|+++.... + .....|++|.++-+.|.++| +.+|.++..+|...+|.
T Consensus 203 ----------~~Fkhndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~p----l~~iv~lk~Kyk~Rvil 268 (467)
T KOG1358|consen 203 ----------SYFKHNDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICP----LPEIVKLKNKYKFRVIL 268 (467)
T ss_pred ----------EEecCCCHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccc----cHHHHHHHhhheEEEEE
Confidence 1244555677777653211 1 22568999999999999999 99999999999999999
Q ss_pred ehhhcCCCcccc--ccccccCCCC---CCeeeec--ccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHH
Q 013204 244 DEVICAFGRLGT--MFGCDKYSIK---PDLVSFA--KALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPV 316 (447)
Q Consensus 244 DEv~~g~g~~g~--~~~~~~~~~~---~d~v~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 316 (447)
||..+ ||..|. .+..+++++. .|+++.| -+++.++ |+.+++.-+.+ ... ..+.....+.+..|+
T Consensus 269 dEs~S-fG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas~G---gFc~G~~~i~~-hQr----LSg~~Y~fSAslPp~ 339 (467)
T KOG1358|consen 269 DESLS-FGVLGKTGRGVTEHFGVPITDIDIVTASMETALASGG---GFCAGKSFIAD-HQR----LSGSGYCFSASLPPY 339 (467)
T ss_pred ecccc-cccccccCccccccCCCCccceeeeeecccccccccC---ceeecceeeEe-eee----ccccceeeeccCchh
Confidence 99998 766665 4567888875 4677655 3555433 45556444322 211 111122234455677
Q ss_pred HHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHH
Q 013204 317 SCAVAIEALKIYKE-RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQC 395 (447)
Q Consensus 317 ~~~aa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l 395 (447)
...+|..+++++++ ++..+.++.....+...|+.... +.......+.+..+.+.....+ ...+.++.+.+...+
T Consensus 340 la~aa~~ai~i~~~~p~~~~~L~~k~~~~H~~l~~~s~--~~v~~~~~SPi~hl~l~~~~~s---~e~e~~lL~eivd~~ 414 (467)
T KOG1358|consen 340 LAGAAIKAILIEEWNPEIVQPLRAKVAKFHAALSSNSG--FIVSGSPESPIIHLQLERSYGS---REKEEKLLEEIVDKC 414 (467)
T ss_pred hhhhHHHHHHHHhhCcchhhhhhccccccchhhhcCCc--eEEecCcCCceeeeeecccccc---hHHHHHHHHHHHHHH
Confidence 77888888887764 45666777777777777765321 2222233455556666543322 122334556677777
Q ss_pred HHcCceEEee-----------CCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 396 EKHGMLVRVS-----------GDNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 396 ~~~Gi~~~~~-----------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+.+|+++... ...+|++....+++|||+++.+.++++...
T Consensus 415 i~~~~ll~~a~~~~~~e~~~~~pSiri~~~a~~seeel~ra~~~ik~~~~~ 465 (467)
T KOG1358|consen 415 IAEGVLLTRAKYLEKLERCPIPPSIRICVSAGMSEEELERAAELIKEVASA 465 (467)
T ss_pred HhhcceehhhhhhhhcccCCCCCcEEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 7778887643 247999999999999999999999988765
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-17 Score=161.99 Aligned_cols=305 Identities=13% Similarity=0.093 Sum_probs=191.9
Q ss_pred hHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhh-cccCCccccC
Q 013204 77 KPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAA-SLSGLPALHQ 155 (447)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~-~~~~~~~~~~ 155 (447)
+...++.+.+.+++.....+.+++++||+++++.++.... .++++|++.++.|++.....+ ...|...
T Consensus 42 ~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~--------~~Gd~Vlv~~~~~~~~~~~~~~~~~g~~v--- 110 (401)
T PLN02409 42 ALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTL--------SPGDKVVSFRIGQFSLLWIDQMQRLNFDV--- 110 (401)
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcC--------CCCCEEEEeCCCchhHHHHHHHHHcCCce---
Confidence 4555677777777643333578999999999999987653 345789998888876542211 1112111
Q ss_pred CCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHH--
Q 013204 156 KFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAV-- 233 (447)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l-- 233 (447)
..++.+.. .. .+.+++++.+......++++|++..+.+.+|.+.+ +++|.++
T Consensus 111 ---------~~v~~~~~-------~~------~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~----~~~i~~l~~ 164 (401)
T PLN02409 111 ---------DVVESPWG-------QG------ADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTND----LAGVRKLLD 164 (401)
T ss_pred ---------EEEECCCC-------CC------CCHHHHHHHHhhCcCCCccEEEEEeecccccccCC----HHHHHHHHh
Confidence 11111100 00 01377887776421124667777777667777776 8888888
Q ss_pred HHhcCCEEEEehhhcCCCccccccccccCCCCCCeeee--cccCCCcccceeEEEeChhHHHHhhhccCCCCcc------
Q 013204 234 VKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF--AKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSF------ 305 (447)
Q Consensus 234 ~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~--sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~------ 305 (447)
|+++|+++|+|++++ +|.. . ++...+..|++++ +|+++++ .++|+++.+++.++.+.........+
T Consensus 165 ~~~~g~~~vvD~v~s-~g~~--~--id~~~~~~D~~~~s~~K~l~~P-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (401)
T PLN02409 165 CAQHPALLLVDGVSS-IGAL--D--FRMDEWGVDVALTGSQKALSLP-TGLGIVCASPKALEASKTAKSPRVFFDWADYL 238 (401)
T ss_pred hhccCcEEEEEcccc-cCCc--c--ccccccCccEEEEcCccccCcC-CCcceeEECHHHHHHHhcCCCCCeecCHHHHH
Confidence 999999999999987 5322 2 2222334677754 5999887 58999999999888775421110000
Q ss_pred --CcCC---CCCCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHhHhhccCCCceeeE--eeeeeEEEEEeecCC
Q 013204 306 --SHGF---TYSGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQDGVKAFSDSPIIGEI--RGTGLILGTEFADNK 375 (447)
Q Consensus 306 --~~~~---t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~--~~~g~~~~i~~~~~~ 375 (447)
...+ .++++...+.+..++++.+.+ ++..++.+++.+++++.|+++ +..++... ...+.+..+.++...
T Consensus 239 ~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~-g~~~~~~~~~~~s~~v~~~~~p~~~ 317 (401)
T PLN02409 239 KFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAW-GLKLCTKKPEWRSDTVTAVVVPEGI 317 (401)
T ss_pred HHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcccceEEEeCCCCC
Confidence 0011 335555667777788887654 345677778888888888766 33222211 112233344443221
Q ss_pred CCCCCCCCCcchHHHHHHHHH-HcCceEEee-----CCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 376 SPNEPFPPEWGIGAYFGAQCE-KHGMLVRVS-----GDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-----g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
....+.+.+. +.|+.+..+ ++.+|+++...++++++..++++|++++.++
T Consensus 318 -----------~~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~ 373 (401)
T PLN02409 318 -----------DSAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGALAGVEMVLKDV 373 (401)
T ss_pred -----------CHHHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 1334665654 669988854 4679999999999999999999999999865
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.5e-17 Score=157.17 Aligned_cols=304 Identities=14% Similarity=0.152 Sum_probs=186.0
Q ss_pred hHHHHHHHHHHHhcCcCC-CCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchh-hhhcccCCcccc
Q 013204 77 KPSLDLAKELLEMFTASK-MAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTL-IAASLSGLPALH 154 (447)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~-~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~-~~~~~~~~~~~~ 154 (447)
+...++.+.+++++...+ .+.+++++||+++++.++..+. ..++++++..++|.+... ......|...
T Consensus 37 ~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~--------~~~~~vlv~~~~~~~~~~~~~~~~~g~~~-- 106 (368)
T PRK13479 37 ALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLV--------PRDGKVLVPDNGAYGARIAQIAEYLGIAH-- 106 (368)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhcc--------CCCCeEEEEeCCchHHHHHHHHHHcCCcE--
Confidence 466778888888874322 3568899999999999998763 234677777777766532 1111112111
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
..++.+..+. .+.+++++.+... .++.+|.+..+++..|...| +++|.++|
T Consensus 107 ----------~~i~~~~~~~-------------~d~~~l~~~l~~~--~~~~~v~~~~~~~~tG~~~~----~~~i~~l~ 157 (368)
T PRK13479 107 ----------VVLDTGEDEP-------------PDAAEVEAALAAD--PRITHVALVHCETTTGILNP----LDEIAAVA 157 (368)
T ss_pred ----------EEEECCCCCC-------------CCHHHHHHHHHhC--CCCcEEEEEcccCccccccC----HHHHHHHH
Confidence 1122111000 0137777776532 23445555555566677776 89999999
Q ss_pred HhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCcccceeEEEeChhHHHHhhhccCCCCcc-------
Q 013204 235 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSF------- 305 (447)
Q Consensus 235 ~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~------- 305 (447)
+++|+++|+|++++ +|.. .. ......+|+++ ++|.+.|+ .++|++++++++++.+...... ..+
T Consensus 158 ~~~~~~livDa~~~-~g~~--~~--~~~~~~~d~~v~s~~K~l~g~-~G~G~l~~~~~~~~~~~~~~~~-~~~~~~~~~~ 230 (368)
T PRK13479 158 KRHGKRLIVDAMSS-FGAI--PI--DIAELGIDALISSANKCIEGV-PGFGFVIARRSELEACKGNSRS-LSLDLYDQWA 230 (368)
T ss_pred HHcCCEEEEEcccc-cCCc--cc--cccccCceEEEecCccccccC-CCceEEEECHHHHHHhhcCCCC-eeecHHHHHh
Confidence 99999999998774 6532 22 22223467765 46988776 5789999999988877532110 000
Q ss_pred ----CcCCCCCCcHHHHHHHHHHHHHHhh----hcHHHHHHHHHHHHHHhHhhccCCCceee-EeeeeeEEEEEeecCCC
Q 013204 306 ----SHGFTYSGHPVSCAVAIEALKIYKE----RNIVEQVNKIAPKFQDGVKAFSDSPIIGE-IRGTGLILGTEFADNKS 376 (447)
Q Consensus 306 ----~~~~t~~~~~~~~~aa~a~l~~~~~----~~~~~~~~~~~~~l~~~L~~l~~~~~~~~-~~~~g~~~~i~~~~~~~ 376 (447)
.....++.+..++++..++++.+.+ ++..+++.++.+++++.|+++ +...+.. .........+.+.....
T Consensus 231 ~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 309 (368)
T PRK13479 231 YMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRAL-GFEPLLDAEIQSPIIVTFHAPADPA 309 (368)
T ss_pred hhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCcccCCchhcCceEEEEECCCCCC
Confidence 0111245566666666677776543 234567777778888888776 2222111 00111223333332210
Q ss_pred CCCCCCCCcchHHHHHHHHHHcCceEEeeC----CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 377 PNEPFPPEWGIGAYFGAQCEKHGMLVRVSG----DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g----~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
. ....+.+.|.++||+++++. +.+|++....++++++++++++|+++++++
T Consensus 310 ~---------~~~~l~~~L~~~gi~v~~g~~~~~~~iRis~~~~~t~edi~~~l~~L~~~l~~~ 364 (368)
T PRK13479 310 Y---------DFKEFYERLKEQGFVIYPGKLTQVDTFRIGCIGDVDAADIRRLVAAIAEALYWM 364 (368)
T ss_pred c---------CHHHHHHHHHHCCEEEecCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHHc
Confidence 0 13468889999999998752 479999766789999999999999988754
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.7e-17 Score=157.45 Aligned_cols=322 Identities=17% Similarity=0.140 Sum_probs=190.1
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcce
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 129 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~ 129 (447)
.+|.+.+++..................+...++.+.+++++. .+.+.+++++||++++..++..++.... .+ .+++.
T Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g-~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~-~~g~~ 108 (373)
T TIGR03812 32 PHPIAVKAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLH-LPDAYGYIVSGGTEANIQAVRAAKNLAR-EE-KRTPN 108 (373)
T ss_pred chHHHHHHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhC-CCCCCeEEeccHHHHHHHHHHHHHHHHh-cc-CCCcE
Confidence 577878888777544211111112233445678888888873 3445778899999999998876542210 01 12356
Q ss_pred EEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 013204 130 FIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFI 209 (447)
Q Consensus 130 vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi 209 (447)
|++.+++|..+.. .....|... ..++....+ ..+++++++.+.. +++++++
T Consensus 109 vl~~~~~h~~~~~-~~~~~G~~~------------~~v~~~~~~-------------~~d~~~l~~~l~~---~~~~vv~ 159 (373)
T TIGR03812 109 IIVPESAHFSFEK-AAEMLGLEL------------RYAPLDEDY-------------TVDVKDVEDLIDD---NTIGIVG 159 (373)
T ss_pred EEECCcchHHHHH-HHHHcCCeE------------EEEeeCCCC-------------CcCHHHHHHHHhh---CcEEEEE
Confidence 7777766654332 222222211 111211110 0114677777652 3455666
Q ss_pred EccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccc---c---ccccCCCCCCeeeec--ccCCCcccc
Q 013204 210 AEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTM---F---GCDKYSIKPDLVSFA--KALSSAYMP 281 (447)
Q Consensus 210 ~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~---~---~~~~~~~~~d~v~~s--K~l~gg~~~ 281 (447)
+.|. +..|.+.+ +++|.++|++||+++|+|++|.++ ..+.. . .....-...|.++++ |...++ .|
T Consensus 160 ~~~~-~~tG~~~~----~~~i~~l~~~~~~~livD~a~~~~-~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~-~~ 232 (373)
T TIGR03812 160 IAGT-TELGQIDD----IEELSKIALENGIYLHVDAAFGGF-VIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSP-IP 232 (373)
T ss_pred ECCC-CCCCccCC----HHHHHHHHHHcCCeEEEEcCchhH-HHHHHhcCCCCCCccccCCCCCEEEECccccCCCc-CC
Confidence 7764 55677766 999999999999999999999744 21100 0 011110124666554 632233 57
Q ss_pred eeEEE-eChhHHHHhhhccCCCCccCcCC-----CCCCcHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHhHhhcc
Q 013204 282 IGAIL-VSPEVSEVIHSQSNTLGSFSHGF-----TYSGHPVSCAVAIEALKIYKER---NIVEQVNKIAPKFQDGVKAFS 352 (447)
Q Consensus 282 ~g~~~-~~~~~~~~~~~~~~~~~~~~~~~-----t~~~~~~~~~aa~a~l~~~~~~---~~~~~~~~~~~~l~~~L~~l~ 352 (447)
.|+++ .++++.+.+.... .+.... ..+.++.+++++.++++.+.++ +..++..++.+++++.|+++
T Consensus 233 ~G~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~- 307 (373)
T TIGR03812 233 AGGILFRSKSYLKYLSVDA----PYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKI- 307 (373)
T ss_pred ceEEEEeCHHHHhhhcccC----cccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 77555 5777777664211 111110 1234456677777888876543 35678888888999888876
Q ss_pred CCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee--CCEEEEecCCCCCHHHHHHHHHHHH
Q 013204 353 DSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS--GDNIMMSPPFIMSPEEVDELISKYG 430 (447)
Q Consensus 353 ~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--g~~iR~~~~~~~t~e~i~~~~~~l~ 430 (447)
+...+ ..+...++.+.+.+ ...+.++|.++||+++.. ...+|++++..+|++|+++++++|+
T Consensus 308 g~~~~--~~~~~~~v~~~~~~--------------~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edid~l~~~L~ 371 (373)
T TIGR03812 308 GFEPV--IEPVLNIVAFEVDD--------------PEEVRKKLRDRGWYVSVTRCPKALRIVVMPHVTREHIEEFLEDLK 371 (373)
T ss_pred CCeEE--cCCCceEEEEEeCC--------------HHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHh
Confidence 22111 12233344443321 235788899999999876 3579999999999999999999997
Q ss_pred H
Q 013204 431 K 431 (447)
Q Consensus 431 ~ 431 (447)
+
T Consensus 372 ~ 372 (373)
T TIGR03812 372 E 372 (373)
T ss_pred h
Confidence 5
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-16 Score=154.48 Aligned_cols=328 Identities=14% Similarity=0.107 Sum_probs=188.2
Q ss_pred CEEEecCCccccccCCC--CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHH
Q 013204 33 KKYLDSLAGLWCTALGG--SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDT 110 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~ 110 (447)
+.+|+..+.+ +.||- .+++++++|.++.+++ ....+...++++++++++ +.+++++++|+++|+..
T Consensus 8 ~~~ina~g~~--t~~g~s~~~~~v~~a~~~~~~~~-------~~~~~~~~~~~~~~a~~~---g~~~~~~~~g~t~al~~ 75 (363)
T TIGR01437 8 KKVINASGKM--TILGVSTVSDEVADAQKRGAQNY-------FEIKELVNKTGEYIANLL---GVEDAVIVSSASAGIAQ 75 (363)
T ss_pred ceEEECCcEe--ecCCCCCCCHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHhh---CCCeEEEEcCHHHHHHH
Confidence 4567765554 66775 4899999999997653 124566778888888886 44589999999999999
Q ss_pred HHHHHHHHHHhcCC-----------CCcceEEEEcCCCccc---hhhhhcccCCccccCCCCCCCCcceecCCCCcccCC
Q 013204 111 QVKLVWYYNNALGR-----------PNKKKFIARQKSYHGS---TLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYA 176 (447)
Q Consensus 111 Al~~~~~~~~~~~~-----------~~~~~vi~~~~~yhg~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (447)
+++.+... |+ -.++.||+..+.|..+ ....+...|... ..+++..
T Consensus 76 al~al~~~----Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~------------v~v~~~~----- 134 (363)
T TIGR01437 76 SVAAVITR----GNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKV------------VEAGYAN----- 134 (363)
T ss_pred HHHHHhcC----CCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeE------------EEEcCCC-----
Confidence 99976411 11 0124677776555432 112222222111 1111100
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccc
Q 013204 177 HPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTM 256 (447)
Q Consensus 177 ~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~ 256 (447)
..+++++++.+. +++.++++++...+..|.+.+ +++|.++|++||+++|+|++|+ . ...
T Consensus 135 ----------~~d~~~le~ai~---~~t~ai~~v~~~~~~~g~~~~----~~~i~~~a~~~gi~vivD~a~~-~--~~~- 193 (363)
T TIGR01437 135 ----------ECSAEQLEAAIT---EKTAAILYIKSHHCVQKSMLS----VEDAAQVAQEHNLPLIVDAAAE-E--DLQ- 193 (363)
T ss_pred ----------CCCHHHHHHhcC---hhceEEEEEecCCCCcCCcCC----HHHHHHHHHHcCCeEEEECCCC-C--chH-
Confidence 011377888775 333334435443334455555 8999999999999999999996 2 110
Q ss_pred cccccCCCCCCeeeec--ccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh--hc
Q 013204 257 FGCDKYSIKPDLVSFA--KALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE--RN 332 (447)
Q Consensus 257 ~~~~~~~~~~d~v~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~--~~ 332 (447)
....++ .|++++| |.|+| +..|++++++++++.+.......+ ..+.....++++..++++.+.+ .+
T Consensus 194 -~~~~~g--~D~~~~S~~K~l~g--p~~G~l~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~gl~aAl~~~~~~~~~ 263 (363)
T TIGR01437 194 -KYYRLG--ADLVIYSGAKAIEG--PTSGLVLGKKKYIEWVKLQSKGIG-----RAMKVGKENILGLTAALEQYLSTGKE 263 (363)
T ss_pred -HHHHcC--CCEEEEeCCcccCC--CceEEEEEcHHHHHHHHhccCCCc-----ceeccCHHHHHHHHHHHHHHHccCcc
Confidence 011123 5888765 88876 468998888888776642111000 0111111223333445554432 23
Q ss_pred HHHHHHHHHHHHHHhHhhccCCCceeeEeeeee---EEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcC--ceEEe---
Q 013204 333 IVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGL---ILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHG--MLVRV--- 404 (447)
Q Consensus 333 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G--i~~~~--- 404 (447)
..+...++.+++++.|+++++..........+. ...+.+...... .....+.+.|.++| |.+++
T Consensus 264 ~~~~~~~~~~~l~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~~~~g--------~~~~~l~~~L~~~~~~I~~r~~~~ 335 (363)
T TIGR01437 264 SGAEMVAKLTPFIEALNTLKGVSASIVQDEAGRDIARAEIRFDESELG--------MTAADVVQALRQGEPAIYTRGYKA 335 (363)
T ss_pred cHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCCcCceEEEEEeccCCC--------CCHHHHHHHHhcCCCCEEEeeeee
Confidence 344444556678888877643222211111111 112333321000 01456888888777 66664
Q ss_pred eCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 405 SGDNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 405 ~g~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
..+.+|+.|.. .+++|++.++++|++.+
T Consensus 336 ~~~~~~l~~~~-~~~~e~~~~~~~l~~~~ 363 (363)
T TIGR01437 336 NEGIIEIDPRS-VTGGQLDIIVERIREIV 363 (363)
T ss_pred cCCeEEEEeec-CCHHHHHHHHHHHHHhC
Confidence 13569999884 67999999999998753
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.2e-17 Score=155.62 Aligned_cols=312 Identities=14% Similarity=0.154 Sum_probs=185.8
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQ 111 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~A 111 (447)
+..++||+.+. ++++ .++.+++++.+.+.....+ + +.....++.+.+++.+ ..+++++++++|+++|+..+
T Consensus 21 ~~~~~~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~Y-~----~~~g~~~lr~aia~~~-~~~~~~I~it~Ga~~al~~~ 91 (349)
T PRK07908 21 GPGLLDFAVNV--RHDT-PPEWLRERLAARLGDLAAY-P----STEDERRARAAVAARH-GRTPDEVLLLAGAAEGFALL 91 (349)
T ss_pred CCCeEEecCCC--CCCC-CCHHHHHHHHHHhhHhhcC-C----CccchHHHHHHHHHHh-CcChhhEEECCCHHHHHHHH
Confidence 67899998764 4455 5788999999887553222 1 2234566777888776 35778999999999999887
Q ss_pred HHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHH
Q 013204 112 VKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191 (447)
Q Consensus 112 l~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (447)
++ + .+ .++++..|+|......... .|.... .++....+. .+ .+
T Consensus 92 ~~-l---------~~-~~viv~~P~y~~~~~~~~~-~G~~i~------------~v~~~~~~~-----~d--------~~ 134 (349)
T PRK07908 92 AR-L---------RP-RRAAVVHPSFTEPEAALRA-AGIPVH------------RVVLDPPFR-----LD--------PA 134 (349)
T ss_pred Hh-c---------CC-CeEEEeCCCChHHHHHHHH-cCCEEE------------eeccCcccC-----cC--------hh
Confidence 76 3 22 4567788999776533322 222111 111110000 00 12
Q ss_pred HHHHHHHhhCCCcEEEEEE-ccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee-
Q 013204 192 NLEDLILKEGPETIAAFIA-EPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV- 269 (447)
Q Consensus 192 ~le~~l~~~~~~~~a~vi~-epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v- 269 (447)
.+ . ++++++++ .|.|+ +|.+.+ .++|.++|++ +.++|+||+|..+ ..+......... .++++
T Consensus 135 ~l----~----~~~~~i~l~np~NP-TG~~~~----~~~l~~l~~~-~~~iIvDe~y~~~-~~~~~~~l~~~~-~~~~i~ 198 (349)
T PRK07908 135 AV----P----DDADLVVIGNPTNP-TSVLHP----AEQLLALRRP-GRILVVDEAFADA-VPGEPESLAGDD-LPGVLV 198 (349)
T ss_pred Hh----c----cCCCEEEEcCCCCC-CCCCcC----HHHHHHHHhc-CCEEEEECcchhh-ccCCcccccccc-CCCEEE
Confidence 11 1 12334444 55544 455554 4567778864 7889999999876 233221211111 13433
Q ss_pred --eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHH--H-hhhcHHHHHHHHHHHH
Q 013204 270 --SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKI--Y-KERNIVEQVNKIAPKF 344 (447)
Q Consensus 270 --~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~--~-~~~~~~~~~~~~~~~l 344 (447)
+|||.++-+++++|++++++++++.+... . ..+..+++.++++.+.++- . .-++..++++++.+++
T Consensus 199 i~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l 269 (349)
T PRK07908 199 LRSLTKTWSLAGLRVGYALGAPDVLARLTRG-------R--AHWPVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEM 269 (349)
T ss_pred EeecccccCCccceeeeeecCHHHHHHHHhc-------C--CCCCccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 57998873338999999999998888632 1 1233445555444333320 0 0123345556666666
Q ss_pred HHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-------CCEEEEecCCCC
Q 013204 345 QDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-------GDNIMMSPPFIM 417 (447)
Q Consensus 345 ~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------g~~iR~~~~~~~ 417 (447)
.+.|+++ .+.......|.++.+.+.+ ...+.+.|.++||.+.++ .+.+|++. .
T Consensus 270 ~~~L~~~---~~~~~~p~~g~~~~~~~~~--------------~~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~---~ 329 (349)
T PRK07908 270 VAGLRAV---GARVVDPAAAPFVLVRVPD--------------AELLRKRLRERGIAVRRGDTFPGLDPDYLRLAV---R 329 (349)
T ss_pred HHHHHhC---CcEeccCCCceEEEEECCc--------------HHHHHHHHHhCCEEEEECCCCCCCCCCeEEEEe---C
Confidence 6666654 2211112346677776542 234778888999999874 25699994 5
Q ss_pred CHHHHHHHHHHHHHHHH
Q 013204 418 SPEEVDELISKYGKALK 434 (447)
Q Consensus 418 t~e~i~~~~~~l~~~l~ 434 (447)
+++++++++++|++.+.
T Consensus 330 ~~~~~~~l~~al~~~~~ 346 (349)
T PRK07908 330 PRAEVPVLVQALAEILK 346 (349)
T ss_pred CCccHHHHHHHHHHHHh
Confidence 88899999999988754
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-17 Score=159.69 Aligned_cols=321 Identities=17% Similarity=0.166 Sum_probs=187.5
Q ss_pred EEecCCccccccCCCCCHHHHHHHHHHHhcCCcc-cc----cCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHH
Q 013204 35 YLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY-HS----FWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEAND 109 (447)
Q Consensus 35 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~ 109 (447)
|||..+. +.-++++.+++.+.+...... +. ......+...++.+.+++++. .+.+.++|++|+++++.
T Consensus 2 Yld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g-~~~~~v~~t~~~t~a~~ 74 (364)
T PLN02651 2 YLDMQAT------TPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIG-ADPKEIIFTSGATESNN 74 (364)
T ss_pred cccCcCC------CCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEeCCHHHHHH
Confidence 6665433 346899999998887542111 10 000012335567778888763 45678999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh--hcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA--ASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
.++..+.... . .++++|++....|+...... +...+.. +..++....+.
T Consensus 75 ~~l~~~~~~~---~-~~g~~vl~~~~~h~s~~~~~~~~~~~g~~------------v~~v~~~~~~~------------- 125 (364)
T PLN02651 75 LAIKGVMHFY---K-DKKKHVITTQTEHKCVLDSCRHLQQEGFE------------VTYLPVKSDGL------------- 125 (364)
T ss_pred HHHHHHHHhc---c-CCCCEEEEcccccHHHHHHHHHHHhcCCE------------EEEEccCCCCc-------------
Confidence 9998664221 1 22356666554443322111 1111111 11122211000
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCC
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPD 267 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d 267 (447)
.+.+++++.+. ++++++++..+++..|.+.| +++|.++|++||+++++|.+|+ +|.. . ++...+.+|
T Consensus 126 ~d~~~l~~~i~----~~t~lv~v~~~~n~tG~~~~----l~~I~~~~~~~g~~~~vD~a~~-~g~~--~--~~~~~~~~D 192 (364)
T PLN02651 126 VDLDELAAAIR----PDTALVSVMAVNNEIGVIQP----VEEIGELCREKKVLFHTDAAQA-VGKI--P--VDVDDLGVD 192 (364)
T ss_pred CCHHHHHHhcC----CCcEEEEEECCCCCceeccc----HHHHHHHHHHcCCEEEEEcchh-hCCc--c--cCcccCCCC
Confidence 01367777664 34678888888888888887 9999999999999999999997 4432 2 222334579
Q ss_pred eeeec--ccCCCcccceeEEEeChhHHHHhhhccC---CCCccCcCCCCCCcHHHHHHHHHHHHHHhh--hcHHHHHHHH
Q 013204 268 LVSFA--KALSSAYMPIGAILVSPEVSEVIHSQSN---TLGSFSHGFTYSGHPVSCAVAIEALKIYKE--RNIVEQVNKI 340 (447)
Q Consensus 268 ~v~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~--~~~~~~~~~~ 340 (447)
++++| | +.|+ .++|+++.+++....+..... ....+. ..+.+..++.+..++|+.+.+ ++..++.+++
T Consensus 193 ~~~~s~hK-~~gp-~G~g~l~v~~~~~~~l~p~~~g~~~~~~~~---~GT~~~~~~~~l~~al~~~~~~~~~i~~~~~~l 267 (364)
T PLN02651 193 LMSISGHK-IYGP-KGVGALYVRRRPRVRLEPLMSGGGQERGRR---SGTENTPLVVGLGAACELAMKEMDYDEKHMKAL 267 (364)
T ss_pred EEEechhh-hCCC-CceEEEEEcCCCCCCCCccccCCCccCCcc---CCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99876 7 5554 579999999876554432100 000111 234555666666777776653 3345677777
Q ss_pred HHHHHHhHhh-ccCCCceeeE---eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-----------
Q 013204 341 APKFQDGVKA-FSDSPIIGEI---RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS----------- 405 (447)
Q Consensus 341 ~~~l~~~L~~-l~~~~~~~~~---~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----------- 405 (447)
.+++++.|++ +++..+.... .....++.+.+.... ...+.+.|.+ |.++.+
T Consensus 268 ~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~------------~~~~~~~L~~--i~v~~g~~c~~~~~~~~ 333 (364)
T PLN02651 268 RERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAYVE------------GESLLMGLKE--VAVSSGSACTSASLEPS 333 (364)
T ss_pred HHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeCCCC------------HHHHHHHhCC--EEEEchhhcCCCCCCcC
Confidence 7777777764 3332222211 112334555543211 3446666643 555422
Q ss_pred -------------CCEEEEecCCCCCHHHHH
Q 013204 406 -------------GDNIMMSPPFIMSPEEVD 423 (447)
Q Consensus 406 -------------g~~iR~~~~~~~t~e~i~ 423 (447)
.+.+|+|++..+|++|||
T Consensus 334 ~~~~~~g~~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 334 YVLRALGVPEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred HHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence 146999999999999985
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.8e-17 Score=156.17 Aligned_cols=310 Identities=17% Similarity=0.215 Sum_probs=184.9
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDT 110 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~ 110 (447)
++..++||..+. ++++ .+|.+.+++.+.+...... ..+.....++.+.+++++. .+.+++++++|+++++..
T Consensus 16 ~~~~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~----~Y~~~g~~~lr~~ia~~~~-~~~~~I~~t~G~~~~l~~ 87 (337)
T PRK03967 16 EGNYRIWLDKNE--NPFD-LPEELKEEIFEELKRVPFN----RYPHITSDPLREAIAEFYG-LDAENIAVGNGSDELISY 87 (337)
T ss_pred CCCceEEecCCC--CCCC-CCHHHHHHHHHHhhcCccc----cCCCCCHHHHHHHHHHHhC-cCcceEEEcCCHHHHHHH
Confidence 455678887764 4565 5789999998887532111 1123345678888888874 567899999999999877
Q ss_pred HHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHH
Q 013204 111 QVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190 (447)
Q Consensus 111 Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (447)
+++.. + ++.|++.+|.|..+...... .|... ..++..+.+. .++
T Consensus 88 ~~~~~---------~-gd~V~v~~P~y~~~~~~~~~-~g~~~------------~~v~~~~~~~-------------~d~ 131 (337)
T PRK03967 88 LVKLF---------E-GKHIVITPPTFGMYSFYAKL-NGIPV------------IDVPLKEDFT-------------IDG 131 (337)
T ss_pred HHHHh---------C-CCeEEEeCCChHHHHHHHHH-cCCeE------------EEeecCCCCC-------------cCH
Confidence 66543 2 36899999999765433222 22111 1111111000 012
Q ss_pred HHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee-
Q 013204 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV- 269 (447)
Q Consensus 191 ~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v- 269 (447)
+++++.. ++....+++.|.|++| .+. + .++|.++++ +++++|+||+|.+|. +... .......++++
T Consensus 132 ~~l~~~~----~~~~~v~~~~P~NPtG-~~~-~---~~~l~~i~~-~~~~ii~De~y~~~~--~~~~-~~~~~~~~~vi~ 198 (337)
T PRK03967 132 ERIAEKA----KNASAVFICSPNNPTG-NLQ-P---EEEILKVLE-TGKPVVLDEAYAEFS--GKSL-IGLIDEYPNLIL 198 (337)
T ss_pred HHHHHhc----cCCCEEEEeCCCCCCC-CCC-C---HHHHHHHHh-cCCEEEEECchhhhc--ccch-HHHHhhCCCEEE
Confidence 4555433 2233455666755555 444 4 456666674 799999999998773 2111 11111123443
Q ss_pred --eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHH
Q 013204 270 --SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE-RNIVEQVNKIAPKFQD 346 (447)
Q Consensus 270 --~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-~~~~~~~~~~~~~l~~ 346 (447)
+|||.++.+++++|++++++++++.+... . ..++.+.+++.++.++++..+. .+......+.++.+.+
T Consensus 199 l~S~SK~~~l~GlRiG~iv~~~~~i~~~~~~-------~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~ 269 (337)
T PRK03967 199 LRTFSKAFGLAGIRAGYAIANEEIIDALYRI-------K--PPFSLNILTMKIVRLALDHYDLIEERIDYIIKERERVRR 269 (337)
T ss_pred EecchHhhcchhhhheeeecCHHHHHHHHhh-------c--CCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 58999984349999999999998888632 1 2345567777777777752111 1122333334444444
Q ss_pred hHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC----CEEEEecCCCCCHHHH
Q 013204 347 GVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG----DNIMMSPPFIMSPEEV 422 (447)
Q Consensus 347 ~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g----~~iR~~~~~~~t~e~i 422 (447)
.|.+. . ..+.+.++.+.+. +.+.|+++||.+.+.+ +.+|++ ..+.++.
T Consensus 270 ~L~~~---~----~~~~~~~~~~~~~------------------~~~~l~~~gi~v~~~~~~~~~~~Ri~---~~~~~~~ 321 (337)
T PRK03967 270 ELGEY---A----YPSDANFLLLKLD------------------AYDYLLENGIVVRKLSGRLEGHIRVT---VGKREEN 321 (337)
T ss_pred HhccC---c----CCCCCcEEEEhHH------------------HHHHHHHCCEEEEeCCCCCCCeEEEe---cCCHHHH
Confidence 44432 1 1233455444331 5678889999997653 469999 4477888
Q ss_pred HHHHHHHHHHHH
Q 013204 423 DELISKYGKALK 434 (447)
Q Consensus 423 ~~~~~~l~~~l~ 434 (447)
+++++.|++..+
T Consensus 322 ~~l~~~l~~~~~ 333 (337)
T PRK03967 322 DEFIKALKEIKE 333 (337)
T ss_pred HHHHHHHHHHHH
Confidence 888888877654
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.9e-17 Score=161.18 Aligned_cols=308 Identities=16% Similarity=0.135 Sum_probs=179.6
Q ss_pred hHHHHHHHHHHHhcC---cCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccc
Q 013204 77 KPSLDLAKELLEMFT---ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPAL 153 (447)
Q Consensus 77 ~~~~~l~~~l~~~~~---~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 153 (447)
+....+++.+.+.+. ..++++|++++|+++++..++.... ..++.|++.+|.|.+.........|...
T Consensus 90 ~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~--------~pGd~Vlv~~P~Y~~~~~~~~~~~g~~~- 160 (468)
T PLN02450 90 AFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLA--------EPGDAFLLPTPYYPGFDRDLKWRTGVEI- 160 (468)
T ss_pred HHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhC--------CCCCEEEECCCCCCchHHHHhhcCCcEE-
Confidence 444445555544322 1367889999999999999888663 3457899999999887543332122211
Q ss_pred cCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhh--CCCcE-EEEEEccccCCCCCccCChhHHHHH
Q 013204 154 HQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE--GPETI-AAFIAEPVIGAGGVIPPPATYFEKV 230 (447)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~-a~vi~epv~~~~G~~~~~~~~l~~l 230 (447)
..+++... +.+. .+.+.+++.+... ...++ ++++++|.|++| .+.+.+.+++|
T Consensus 161 -----------v~v~~~~~----------~~~~-~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG--~~~s~e~l~~l 216 (468)
T PLN02450 161 -----------VPIHCSSS----------NGFQ-ITESALEEAYQQAQKLNLKVKGVLITNPSNPLG--TTTTRTELNLL 216 (468)
T ss_pred -----------EEEecCCc----------cCCc-CCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCC--cccCHHHHHHH
Confidence 11111100 0000 0125566655431 11234 455666766666 55688999999
Q ss_pred HHHHHhcCCEEEEehhhcCCCccccccc--cccC------C--CCCCee---eecccCCCcccceeEEEeChh-HHHHhh
Q 013204 231 QAVVKKYDILFIADEVICAFGRLGTMFG--CDKY------S--IKPDLV---SFAKALSSAYMPIGAILVSPE-VSEVIH 296 (447)
Q Consensus 231 ~~l~~~~g~~li~DEv~~g~g~~g~~~~--~~~~------~--~~~d~v---~~sK~l~gg~~~~g~~~~~~~-~~~~~~ 296 (447)
.++|++|++++|.||+|.++...+..+. .... + ....++ +|||.++.+++++|+++++++ +++.+.
T Consensus 217 l~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~ 296 (468)
T PLN02450 217 VDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAAT 296 (468)
T ss_pred HHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHHHHH
Confidence 9999999999999999997644443221 1111 1 112222 689998743499999999755 556554
Q ss_pred hccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-----hhcHHHHHHHHHHHHHHhHhhccCCCceeeEeee-eeEEEEE
Q 013204 297 SQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-----ERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGT-GLILGTE 370 (447)
Q Consensus 297 ~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-----~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~-g~~~~i~ 370 (447)
.. .. ....+.+++.++.+.|+.-. -.+..+.++++.+.+.+.|+++ ++ ...... |.++++.
T Consensus 297 ~~-------~~--~~~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~---gi-~~~~~~~g~flwi~ 363 (468)
T PLN02450 297 KM-------SS--FGLVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAA---GI-KCLKSNAGLFCWVD 363 (468)
T ss_pred HH-------hh--cCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc---CC-cccCCCceEEEEEE
Confidence 21 11 11235567776666664211 0122344555555555666554 22 122333 5577777
Q ss_pred eecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEeeC-------CEEEEecCCC-CCHHHHHHHHHHHHHHHHHHH
Q 013204 371 FADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVSG-------DNIMMSPPFI-MSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~g-------~~iR~~~~~~-~t~e~i~~~~~~l~~~l~~~~ 437 (447)
+....... .+ .....+...++ +.||.+.|+. +.+|++ +. .+++++++++++|++++.+..
T Consensus 364 l~~~~~~~-~~----~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~--f~~~~~~~l~~~l~ri~~~l~~~~ 432 (468)
T PLN02450 364 MRHLLKSN-TF----EAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVC--FANMSEETLDLAMKRLKSFVESDS 432 (468)
T ss_pred chHhcCcC-Cc----hHHHHHHHHHHHhCCEEEeCccccCCCCCCEEEEE--ecCCCHHHHHHHHHHHHHHHHhcc
Confidence 65321110 00 01123555655 5799998762 469999 55 489999999999999997765
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-17 Score=152.34 Aligned_cols=328 Identities=19% Similarity=0.188 Sum_probs=188.4
Q ss_pred EecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHH
Q 013204 36 LDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV 115 (447)
Q Consensus 36 lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~ 115 (447)
+||.|.+++ | .+|+++++|.++-...... .+..+...++++++++++ +...++|++|||.||..||...
T Consensus 2 ~~f~SDn~~---g-~~~~m~eam~~a~~~~~~~----YG~D~~~~~~e~~~ae~~---g~~a~~Fv~sGT~aN~lal~~~ 70 (342)
T COG2008 2 IDFRSDNVA---G-PTPEMREALAAANAVGDDV----YGEDPTTNALEQRIAELF---GKEAALFVPSGTQANQLALAAH 70 (342)
T ss_pred CccccCccC---C-CCHHHHHHHHhccccCCCC----CCCCHHHHHHHHHHHHHh---CCceEEEecCccHHHHHHHHHh
Confidence 578777554 3 6899999999876322211 346778888999999997 4489999999999999999977
Q ss_pred HHHHHhcCCCCcceEEEEcCCCccchh--hhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHH
Q 013204 116 WYYNNALGRPNKKKFIARQKSYHGSTL--IAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNL 193 (447)
Q Consensus 116 ~~~~~~~~~~~~~~vi~~~~~yhg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 193 (447)
. .+...||+ ...-|-++. ++...-+. ....+ ..+. .-+...++++
T Consensus 71 ~--------~~~~~vi~-~~~aHi~~~E~Ga~~~~~~-----~~~~~-------~~~g------------~~Gklt~e~v 117 (342)
T COG2008 71 C--------QPGESVIC-HETAHIYTDECGAPEFFGG-----GQKLP-------IVPG------------ADGKLTPEDV 117 (342)
T ss_pred c--------CCCCeEEE-eccccceecccCcHHHHcC-----Cceec-------cCCC------------CCCCcCHHHH
Confidence 4 22344444 555665431 11111110 00000 0000 0001114777
Q ss_pred HHHHHhh--CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccc-----cccccCCCCC
Q 013204 194 EDLILKE--GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTM-----FGCDKYSIKP 266 (447)
Q Consensus 194 e~~l~~~--~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~-----~~~~~~~~~~ 266 (447)
+..+... +...+..++.|...+++| .++|.++|++|.++||+||+.|++|-+ |...- -...-+.--.
T Consensus 118 ~~~i~~~d~~~~~~~~~~~e~~~te~G-tVy~l~el~~i~~~~k~~~l~LHmDGA-----R~~nA~valg~~~~~~~~~~ 191 (342)
T COG2008 118 EAAIRPDDIHHAPTPLAVLENTATEGG-TVYPLDELEAISAVCKEHGLPLHMDGA-----RLANALVALGVALKTIKSYV 191 (342)
T ss_pred HHhhcCCCcccCCCceEEEeeccCCCc-eecCHHHHHHHHHHHHHhCCceeechH-----HHHHHHHHcCCCHHHHHhhC
Confidence 7766531 112345666666655777 567899999999999999999999944 22110 0011111125
Q ss_pred Ceeee--cccCCCcccceeEEE-eChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 013204 267 DLVSF--AKALSSAYMPIGAIL-VSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPK 343 (447)
Q Consensus 267 d~v~~--sK~l~gg~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~ 343 (447)
|.++| +|+++ +|++.++ ++.++++.+.....+.+ +-+.-.-+-.++++..|+.--......+..++.++
T Consensus 192 D~v~~~~tK~g~---~~~gAiv~gn~~~~~~a~~~rK~~G-----gl~~k~r~laA~~~~~l~~~~~~~~~~Han~mA~~ 263 (342)
T COG2008 192 DSVSFCLTKGGG---APVGAIVFGNRDFAKRARRWRKRAG-----GLMRKARFLAAQGLYALEDDVWRLAADHANAMAAR 263 (342)
T ss_pred CEEEEecccCCc---ceeeeEEEcCHHHHHHHHHHHHHhc-----ccHhhhhHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 76655 56655 5666655 78888887764322222 22322233334444445411011112334444788
Q ss_pred HHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeCCEEEEecCCCCCHHHHH
Q 013204 344 FQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVD 423 (447)
Q Consensus 344 l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g~~iR~~~~~~~t~e~i~ 423 (447)
|.+.+++..+..+.. +.+.+++.+.+++... ........+...|++....+..+||..++.+++++|+
T Consensus 264 La~~~~~~~G~~~~~--~~~tN~vf~~l~~~~i----------~~l~~~~~~~~~~~~~~~~~~~vRfvts~a~~~edv~ 331 (342)
T COG2008 264 LAEGLEAKPGVKLAF--PVETNMVFVRLPESAI----------EALRLAGALFYRGVLIGAHGEIVRFVTSWATSEEDVD 331 (342)
T ss_pred HHHhhhhcCCceecc--CCcccEEEEECChHHH----------HHHHhhchhheeeeeccCCCceEEEEeeccCCHHHHH
Confidence 888887543333322 2455666666654210 0111223344445555444446999999999999999
Q ss_pred HHHHHHHHHH
Q 013204 424 ELISKYGKAL 433 (447)
Q Consensus 424 ~~~~~l~~~l 433 (447)
+++..+++.+
T Consensus 332 ~~~~~~~~~~ 341 (342)
T COG2008 332 ELVAAIKALL 341 (342)
T ss_pred HHHHHHHHhh
Confidence 9999988764
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.9e-16 Score=153.85 Aligned_cols=335 Identities=13% Similarity=0.115 Sum_probs=192.5
Q ss_pred HHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEE
Q 013204 53 RLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIA 132 (447)
Q Consensus 53 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~ 132 (447)
.+.+++.+++..+...|+ ......+|.+.+++++ +.+.+++++||++|+..++.... ++| + ||+
T Consensus 58 a~~~a~~~a~~~g~~~Y~----~~~g~~~Lreaia~~~---~~~~vv~t~ggt~A~~~~~~all-------~pG-D-Vii 121 (460)
T PRK13238 58 AMSDRQWAAMMRGDEAYA----GSRSYYRLEDAVKDIF---GYPYTIPTHQGRAAEQILFPVLI-------KKG-D-VVP 121 (460)
T ss_pred hhhHHHHHHHHhCCcccC----CCCCHHHHHHHHHHHh---CCCcEEECCCHHHHHHHHHHHhC-------CCC-C-EEc
Confidence 578888888765443322 3455778999999987 45679999999999999987653 133 4 777
Q ss_pred EcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHH-HHHHHHHHHHHHHhhCCCcEEEEEEc
Q 013204 133 RQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEY-STRLANNLEDLILKEGPETIAAFIAE 211 (447)
Q Consensus 133 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~le~~l~~~~~~~~a~vi~e 211 (447)
.++.|..+.......++.+.. +++..... + ...+.+ ...++++|++.+...+++++++|+++
T Consensus 122 ~~p~~~~~~~~i~~~G~~~v~-------------v~~~~~~~---~-~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~ 184 (460)
T PRK13238 122 SNYHFDTTRAHIELNGATAVD-------------LVIDEALD---T-GSRHPFKGNFDLEKLEALIEEVGAENVPFIVMT 184 (460)
T ss_pred cCCcccchHHHHHHcCCEEEE-------------Eecccccc---c-cccccccCCcCHHHHHHHHhhcCCCceeEEEEe
Confidence 777776554333333332221 11110000 0 000001 01225888888875544567777777
Q ss_pred cccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcC--CCcc-----cccc-ccc-c---CCCCCCeeeec-ccCCCc
Q 013204 212 PVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA--FGRL-----GTMF-GCD-K---YSIKPDLVSFA-KALSSA 278 (447)
Q Consensus 212 pv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g--~g~~-----g~~~-~~~-~---~~~~~d~v~~s-K~l~gg 278 (447)
..++.+|..+.+.+.+++|+++|++||++||.|+++.. .... |... ... . .+--.|++++| |..+.
T Consensus 185 ~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~- 263 (460)
T PRK13238 185 ITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAM- 263 (460)
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCC-
Confidence 66555544667889999999999999999999997741 1000 1000 000 0 01126777765 22222
Q ss_pred ccce-eEEEeC-hhHHHHhhhccCCCCccCcC-CCCCCcHHHHHHHH-HHHHHHhhhcHHHHHHHHHHHHHHhHhhccCC
Q 013204 279 YMPI-GAILVS-PEVSEVIHSQSNTLGSFSHG-FTYSGHPVSCAVAI-EALKIYKERNIVEQVNKIAPKFQDGVKAFSDS 354 (447)
Q Consensus 279 ~~~~-g~~~~~-~~~~~~~~~~~~~~~~~~~~-~t~~~~~~~~~aa~-a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~ 354 (447)
.|. |+++.+ +++++.+... ....++ .|+++.+..+.+|+ .+|+....++..+...++.++|.+.|++. +.
T Consensus 264 -~~~GG~i~~~d~~l~~~~~~~----~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~~~~~~~~~~~~~l~~~L~~~-G~ 337 (460)
T PRK13238 264 -VNIGGLLCFRDEDLFTECRTL----CILYEGFPTYGGLAGRDMEALAVGLYEGMDEDYLAYRIGQVEYLGEGLEEA-GV 337 (460)
T ss_pred -CcceeEEEcChHHHHHHhhhc----ccccCCcccccCcHHHHHHHHHhhHHHhhChHHHHHHHHHHHHHHHHHHHC-CC
Confidence 232 455556 5777777531 111122 36777665533333 35554334455555555678888888775 55
Q ss_pred CceeeEeeeeeEEEEEeecCCC--CCCCCCCCcchHHHHHHH-HHHcCceEEeeC------------------CEEEEec
Q 013204 355 PIIGEIRGTGLILGTEFADNKS--PNEPFPPEWGIGAYFGAQ-CEKHGMLVRVSG------------------DNIMMSP 413 (447)
Q Consensus 355 ~~~~~~~~~g~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~-l~~~Gi~~~~~g------------------~~iR~~~ 413 (447)
+++.. .-|.++.+++..-.. +...++ ...++.+ +.+.||.+.+.+ +.+||+.
T Consensus 338 ~~~~p--~Gg~~v~~d~~~~~~~~~~~~~~-----~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~ 410 (460)
T PRK13238 338 PIQTP--AGGHAVFVDAGKFLPHIPAEQFP-----AQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAI 410 (460)
T ss_pred CeEcc--CCceEEEEEchhcCCCCCCCCCc-----hHHHHHHHHHHcCeeeecccceecccCCCCccccCCccceEEEec
Confidence 54432 223444455533110 111111 2335544 557788887642 4699997
Q ss_pred CC-CCCHHHHHHHHHHHHHHHH
Q 013204 414 PF-IMSPEEVDELISKYGKALK 434 (447)
Q Consensus 414 ~~-~~t~e~i~~~~~~l~~~l~ 434 (447)
|- ..|.++++.+.++|.+..+
T Consensus 411 ~rr~~~~~~~~~~~~~l~~~~~ 432 (460)
T PRK13238 411 PRRVYTQSHMDYVAEALKAVKE 432 (460)
T ss_pred ccccCCHHHHHHHHHHHHHHHH
Confidence 73 3499999999999988663
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-16 Score=158.93 Aligned_cols=348 Identities=15% Similarity=0.139 Sum_probs=182.4
Q ss_pred CCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHh-cCc--CC--CCeEEEeCChhhHHHHHHHHHHHHHHhc
Q 013204 48 GGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEM-FTA--SK--MAKVFFTNSGSEANDTQVKLVWYYNNAL 122 (447)
Q Consensus 48 G~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~--~~--~~~v~~~~sGseA~~~Al~~~~~~~~~~ 122 (447)
|...|+.+.++.+.+.. .. |+...+..+....+++.+.+. ... .. .++|+.++|+++|+..++..+.... -
T Consensus 111 ~~~~~~~v~e~~~~~~~-~~-Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~~--l 186 (527)
T PRK09275 111 GFDADEFVYELVDGIIG-DN-YPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENG--L 186 (527)
T ss_pred CCCCCHHHHHHHHHHhc-CC-CCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhhh--c
Confidence 33445544446666632 22 332233344444454433322 111 12 3489999999999999888531100 0
Q ss_pred CCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC--CcccCCCCCCChhHHHHHHHHHHHHHHHhh
Q 013204 123 GRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP--HYWRYAHPGETEEEYSTRLANNLEDLILKE 200 (447)
Q Consensus 123 ~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~le~~l~~~ 200 (447)
. ..+++|++.+|.|..+...+........ ...++.. +.|. .+.+++++++.
T Consensus 187 l-~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~-----------~v~v~~~~~~~f~-------------~d~~~l~~~~~-- 239 (527)
T PRK09275 187 L-KAGDKIALMTPIFTPYLEIPELPRYDLE-----------VVHINADEENEWQ-------------YPDSELEKLRD-- 239 (527)
T ss_pred C-CCCCEEEEeCCChHHHHHHHHHcCCCeE-----------EEEeecCcccCCC-------------CCHHHHHhhcC--
Confidence 1 3458899999999888654433221110 0011110 0011 01256666543
Q ss_pred CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHh--cCCEEEEehhhcCCCccccccccccCCCCCC-ee---eeccc
Q 013204 201 GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKK--YDILFIADEVICAFGRLGTMFGCDKYSIKPD-LV---SFAKA 274 (447)
Q Consensus 201 ~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~--~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d-~v---~~sK~ 274 (447)
++..++++++|.|++| .+.+.+.+++|.++|++ +++++|.||+|..|.. .... .....|+ ++ +|||.
T Consensus 240 -~~tkai~l~nP~NPTG--~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~--~~~s--~~~~~~~~~I~v~SfSK~ 312 (527)
T PRK09275 240 -PSIKALFLVNPSNPPS--VAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVD--DFRS--LFAVLPYNTILVYSFSKY 312 (527)
T ss_pred -CCCCEEEEeCCcCCcC--CCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcc--cccC--HHHhCCCCEEEEeehhhh
Confidence 3344566678877776 56688999999999965 5999999999987742 1111 1111232 22 68998
Q ss_pred CCCcccceeEEEeChh-----HHHHh--------hhcc-----------------CCCCccCcCCCCCCcHHHHHH-H--
Q 013204 275 LSSAYMPIGAILVSPE-----VSEVI--------HSQS-----------------NTLGSFSHGFTYSGHPVSCAV-A-- 321 (447)
Q Consensus 275 l~gg~~~~g~~~~~~~-----~~~~~--------~~~~-----------------~~~~~~~~~~t~~~~~~~~~a-a-- 321 (447)
++..+|++|+++++++ +++.+ .... ...+.+....+.+.+...+.+ +
T Consensus 313 f~mtG~RlG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~ 392 (527)
T PRK09275 313 FGATGWRLGVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALF 392 (527)
T ss_pred ccCcHhHHhhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHH
Confidence 8754599999999876 33222 0000 000111222344444444443 2
Q ss_pred --HHHHHHHhhhcH----HHHHHHHHHHHHHhHhhccCCCceeeEeeeee-EEEEEeecCCC--CCCCCCC---CcchHH
Q 013204 322 --IEALKIYKERNI----VEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGL-ILGTEFADNKS--PNEPFPP---EWGIGA 389 (447)
Q Consensus 322 --~a~l~~~~~~~~----~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~-~~~i~~~~~~~--~~~~~~~---~~~~~~ 389 (447)
.+.++. .++. .+.++++.+.+.+.| +.+.. .....|. ++.+++..... ....+.. ......
T Consensus 393 ~~~all~~--~~~~~~~~~~~~~~Rr~~l~~~L----g~~~~-~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~ 465 (527)
T PRK09275 393 SLFALLDE--EDAYKKAMKDIIRRRYKALYEGL----GLPEP-EDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPV 465 (527)
T ss_pred HHHHHHhC--chHHHHHHHHHHHHHHHHHHHHc----CCCCc-CCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHH
Confidence 222331 1222 233333333333333 11211 1233444 44555543110 0000100 000123
Q ss_pred HHHHHHH-HcCceEEeeC------CEEEEecCCC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 013204 390 YFGAQCE-KHGMLVRVSG------DNIMMSPPFI-MSPEEVDELISKYGKALKATEERVKE 442 (447)
Q Consensus 390 ~~~~~l~-~~Gi~~~~~g------~~iR~~~~~~-~t~e~i~~~~~~l~~~l~~~~~~~~~ 442 (447)
.+..+|+ +.||.+.|+. ..+|++ +. .+++++.++.++|.+.+.+..++.+.
T Consensus 466 ~f~~~Ll~e~gV~v~PG~~Fg~~~~~vRis--~a~~~~~~~~~~~~rl~~~l~~y~~~~~~ 524 (527)
T PRK09275 466 DLLFRLAEETGVVLLPGGGFGGPEWSVRVS--LANLNEEDYAKIGKAIRKLLDEYYEEYKK 524 (527)
T ss_pred HHHHHHHhcCCEEEeCchhhCCCCCeEEEE--EecCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555 5699988762 469999 55 68899999999999999998887754
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.8e-17 Score=158.14 Aligned_cols=281 Identities=16% Similarity=0.173 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCC
Q 013204 78 PSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKF 157 (447)
Q Consensus 78 ~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~ 157 (447)
...+|.+.+++.+ +.++++|++++|+++++..+++... +++++.|++.+|.|..+...+...+. ..
T Consensus 61 ~~~~Lr~aia~~~-~~~~~~I~it~Gs~~~i~~~~~~~~-------~~g~d~vlv~~P~y~~y~~~~~~~g~-~v----- 126 (354)
T PRK04635 61 QPPELINAYSAYA-GVAPEQILTSRGADEAIELLIRAFC-------EPGQDSIACFGPTYGMYAISAETFNV-GV----- 126 (354)
T ss_pred CHHHHHHHHHHHh-CcCHHHEEEeCCHHHHHHHHHHHhc-------CCCCCeEEEcCCChHHHHHHHHHcCC-EE-----
Confidence 3567888888876 4577899999999999999988652 23447899999999776543332221 11
Q ss_pred CCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhc
Q 013204 158 DLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKY 237 (447)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~ 237 (447)
..++....+. . +.+.+++ + ++...++++.|.|++ |.+ .+.+.+++|.+.|+
T Consensus 127 -------~~v~~~~~~~-----~--------~~~~l~~-~----~~~~li~i~nP~NPT-G~~-~~~~~l~~l~~~~~-- 177 (354)
T PRK04635 127 -------KALPLTADYQ-----L--------PLDYIEQ-L----DGAKLVFICNPNNPT-GTV-IDRADIEQLIEMTP-- 177 (354)
T ss_pred -------EEEecCCCCC-----C--------CHHHHHh-c----cCCCEEEEeCCCCCC-Ccc-CCHHHHHHHHHhCC--
Confidence 1111111000 0 0133432 1 223334555555555 444 45666677766665
Q ss_pred CCEEEEehhhcCCCccccccccccCCCCCCee---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCc
Q 013204 238 DILFIADEVICAFGRLGTMFGCDKYSIKPDLV---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGH 314 (447)
Q Consensus 238 g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 314 (447)
++++|+||+|..|... .. ........+.++ +|||.++-+++|+|++++++++++.+... . ..++.+
T Consensus 178 ~~~vivDeay~~~~~~-~s-~~~~~~~~~~~iv~~S~SK~~~l~GlRlG~~i~~~~~~~~l~~~-------~--~~~~~~ 246 (354)
T PRK04635 178 DAIVVVDEAYIEFCPE-YS-VADLLASYPNLVVLRTLSKAFALAGARCGFTLANEELIEILMRV-------I--APYPVP 246 (354)
T ss_pred CcEEEEeCchHhhccC-cc-hHHHHhhCCCEEEEechHHHhhhhHHHHhhhhCCHHHHHHHHhh-------c--CCCCCC
Confidence 4999999999877421 11 111111123333 68999874338999999999998887531 1 134445
Q ss_pred HHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHH
Q 013204 315 PVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYF 391 (447)
Q Consensus 315 ~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~ 391 (447)
...+.++.++++.... .+..+.++++++.+.+.|+++ +.+...++.|.++.+.+.+ ...+
T Consensus 247 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~---~~~~~~~~~g~f~~~~~~~--------------~~~~ 309 (354)
T PRK04635 247 LPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAALSMY---GGAKVLEGNGNYVLAKFDD--------------VDAV 309 (354)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhC---CCceECCCCCcEEEEECCC--------------HHHH
Confidence 5566666666642111 122344555556666777665 2122234456666665541 2357
Q ss_pred HHHHHHcCceEEeeC-----CEEEEecCCCCCHHHHHHHHHHHHHH
Q 013204 392 GAQCEKHGMLVRVSG-----DNIMMSPPFIMSPEEVDELISKYGKA 432 (447)
Q Consensus 392 ~~~l~~~Gi~~~~~g-----~~iR~~~~~~~t~e~i~~~~~~l~~~ 432 (447)
.+.|.++||.++.++ +.+|++ ..+++++++++++|++.
T Consensus 310 ~~~l~~~gv~v~~~~~~~~~~~lRis---~~~~e~~~~l~~al~~~ 352 (354)
T PRK04635 310 FKALWDAGIVARAYKDPRLANCIRFS---FSNRAETDKLIGLIRNQ 352 (354)
T ss_pred HHHHHHCCEEEEECCCCCCCCeEEEE---eCCHHHHHHHHHHHHHh
Confidence 788999999997652 469999 46899999999998764
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-17 Score=155.02 Aligned_cols=315 Identities=17% Similarity=0.189 Sum_probs=197.4
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcce
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 129 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~ 129 (447)
+.+.+.+++...--.... +..-.+..+.+.++++..++.+ +.+..+.++-|...|..-+.... ++..
T Consensus 156 ca~~~~~~~~kygl~~cs-s~~e~G~~~~hkelE~l~A~f~---g~e~a~vF~mGf~TNs~~~p~l~---------~~gs 222 (519)
T KOG1357|consen 156 CAEASLKSFDKYGLSRCS-SRHEAGTTEEHKELEELVARFL---GVEDAIVFSMGFATNSMNIPSLL---------GKGS 222 (519)
T ss_pred CChHHHHHHHHhcccccc-cchhcccHHHHHHHHHHHHHhc---CCcceEEEeccccccccCcceee---------cCCc
Confidence 455555555443221111 1112357788999999999886 44455666667777766665442 2233
Q ss_pred EEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhh----C----
Q 013204 130 FIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE----G---- 201 (447)
Q Consensus 130 vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~----~---- 201 (447)
.|+-+.--|++......++|... --|.|+++.+||++|+.. .
T Consensus 223 LIiSDelNHaSi~~GaRLSgAti------------------------------RVfkHNdm~~LEr~Lrd~I~~gqP~Th 272 (519)
T KOG1357|consen 223 LIISDELNHASLITGARLSGATT------------------------------RVFRHNDMQGLERLLRDAIVYGQPKTH 272 (519)
T ss_pred ceeeccccchheeccccccCceE------------------------------EEEecCCHHHHHHHHHHHHhcCCCCcC
Confidence 44434455777544444444321 123455568888887642 1
Q ss_pred -CCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc--ccccccCCCCC---Cee--eecc
Q 013204 202 -PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT--MFGCDKYSIKP---DLV--SFAK 273 (447)
Q Consensus 202 -~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~--~~~~~~~~~~~---d~v--~~sK 273 (447)
|-+...||+|...++.|.++. |.++..++|+|.++|+.||+|+ .|..|. .+..+++++.| |++ +|.|
T Consensus 273 rp~kki~iivegiysmEg~iv~----Lp~vvalkkkykayl~lDEAHS-iGA~g~tGrgvce~~g~d~~dvDImMGtftK 347 (519)
T KOG1357|consen 273 RPWKKILICVEGIYSMEGTIVD----LPEVVALKKKYKAYLYLDEAHS-IGAMGATGRGVCEYFGVDPEDVDIMMGTFTK 347 (519)
T ss_pred CcchheeeeeccceeccCeecc----cHHHHHhhccccEEEEeecccc-ccccCCCCcceeeccCCCchhheeecceehh
Confidence 223558999999999999988 9999999999999999999998 344443 45678888764 444 6788
Q ss_pred cCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh-------hcHHHHHHHHHHHHHH
Q 013204 274 ALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE-------RNIVEQVNKIAPKFQD 346 (447)
Q Consensus 274 ~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-------~~~~~~~~~~~~~l~~ 346 (447)
++++++ |++.+++++++.++..+ . .+......+|..+...+.+++.+.- .+..+++.++..++|.
T Consensus 348 Sfga~G---Gyiagsk~lid~lrt~s---~--~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~ 419 (519)
T KOG1357|consen 348 SFGAAG---GYIAGSKELIDYLRTPS---P--SALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRW 419 (519)
T ss_pred hccccc---ceecCcHHHHhhhccCC---C--ceeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHH
Confidence 888654 78999999999886421 1 1212222344444556677777652 2345777888888888
Q ss_pred hHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC--------CEEEEecCCCCC
Q 013204 347 GVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--------DNIMMSPPFIMS 418 (447)
Q Consensus 347 ~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g--------~~iR~~~~~~~t 418 (447)
.|+.. .++..-........+-+..+. ....+.+.|+++++.+...+ .++|++.+..++
T Consensus 420 ~l~~~---gfivyG~~dSpVvplll~~~~-----------k~~~f~r~~l~~nigvVvvgfPatpl~e~r~R~c~Sa~ht 485 (519)
T KOG1357|consen 420 ELQKM---GFIVYGNNDSPVVPLLLYGPA-----------KIVAFSREMLERNIGVVVVGFPATPLLESRARFCLSASHT 485 (519)
T ss_pred hhhcC---cEEEecCCCCCcceeeecCcc-----------cccHHHHHHHhcCceEEEEeCCCchHHHhHHHhhhccccc
Confidence 88765 111100001111111111111 12347788999887766543 457999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 013204 419 PEEVDELISKYGKALK 434 (447)
Q Consensus 419 ~e~i~~~~~~l~~~l~ 434 (447)
.|+++++++.+++.=+
T Consensus 486 ~e~ld~~l~~i~~~g~ 501 (519)
T KOG1357|consen 486 KEDLDRALEVIDRVGD 501 (519)
T ss_pred HHHHHHHHHHHhhhch
Confidence 9999999999877643
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-16 Score=156.47 Aligned_cols=256 Identities=13% Similarity=0.055 Sum_probs=145.7
Q ss_pred cceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCC-C-CcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCc
Q 013204 127 KKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDC-P-HYWRYAHPGETEEEYSTRLANNLEDLILKEGPET 204 (447)
Q Consensus 127 ~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~ 204 (447)
++.|++.+|+|..+.......+..... +++ + +.+. .+++.+++.+....++.
T Consensus 142 Gd~Vlv~~P~y~~y~~~~~~~g~~~~~-------------v~l~~~~~~~-------------~d~~~l~~~l~~~~~~~ 195 (423)
T PLN02397 142 GSTIYIPNPTWGNHHNIFRDAGVPVRT-------------YRYYDPKTRG-------------LDFDGLLEDLKAAPDGS 195 (423)
T ss_pred CCEEEEeCCCchhHHHHHHHcCCeEEE-------------eecccCcCCc-------------cCHHHHHHHHHhCCCCC
Confidence 478999999998886555544433211 111 0 0000 01255555554332333
Q ss_pred EEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc--cc-cc-ccCCCCCCee---eecccCCC
Q 013204 205 IAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT--MF-GC-DKYSIKPDLV---SFAKALSS 277 (447)
Q Consensus 205 ~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~--~~-~~-~~~~~~~d~v---~~sK~l~g 277 (447)
...++..|.|++| ...+.+.+++|.++|++||+++|.||+|.+|...+. .. .. .......+++ +|||.++-
T Consensus 196 ~~i~~~~P~NPTG--~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~ 273 (423)
T PLN02397 196 FVLLHACAHNPTG--VDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGL 273 (423)
T ss_pred EEEEeCCCCCCCC--CCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCC
Confidence 4344444566665 566889999999999999999999999998854321 11 11 1111112233 68999885
Q ss_pred cccceeEEE--e-ChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--------hhcHHHHHHHHHHHHHH
Q 013204 278 AYMPIGAIL--V-SPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--------ERNIVEQVNKIAPKFQD 346 (447)
Q Consensus 278 g~~~~g~~~--~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--------~~~~~~~~~~~~~~l~~ 346 (447)
.++|+|+++ . ++++++.+...- .........+.+.+++.++.++|+.-. -++..+.++++++.+.+
T Consensus 274 ~G~RvG~~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~ 350 (423)
T PLN02397 274 YGERVGALSVVCKSADVAVRVKSQL---KLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYD 350 (423)
T ss_pred ccccceEEEEEeCCHHHHHHHHHHH---HHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 339999984 4 555544332100 011111122345556666655554210 12345577777777777
Q ss_pred hHhhccCCC-ceeeEeeeeeEE-EEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEeeCCEEEEecCCCCCHHHHH
Q 013204 347 GVKAFSDSP-IIGEIRGTGLIL-GTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVSGDNIMMSPPFIMSPEEVD 423 (447)
Q Consensus 347 ~L~~l~~~~-~~~~~~~~g~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~g~~iR~~~~~~~t~e~i~ 423 (447)
.|+++ ..+ ....+..+|.++ .+.+. ..++++|+ +.||.+.+.+ |++.. ..+++.++
T Consensus 351 ~L~~~-~~~~~~~~~~p~gg~fl~~~l~----------------~~~~~~Ll~~~~V~v~~~~---Ri~~~-~~~~~~i~ 409 (423)
T PLN02397 351 ALEAR-GSPGDWSHITKQIGMFSFTGLN----------------KEQVDRMTKEYHIYMTRDG---RISMA-GLSSKNVP 409 (423)
T ss_pred HHHhc-CCCCCCCcccCCceEEEecCCC----------------HHHHHHHHHhCCEEECCCC---eEEEe-eCCHHHHH
Confidence 77776 211 122334555544 33332 12556664 6699987544 88832 38999999
Q ss_pred HHHHHHHHHHH
Q 013204 424 ELISKYGKALK 434 (447)
Q Consensus 424 ~~~~~l~~~l~ 434 (447)
+++++|++++.
T Consensus 410 ~~~~~i~~~~~ 420 (423)
T PLN02397 410 YLADAIHAVVT 420 (423)
T ss_pred HHHHHHHHHHh
Confidence 99999999974
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-16 Score=154.93 Aligned_cols=289 Identities=15% Similarity=0.175 Sum_probs=173.7
Q ss_pred HHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCC
Q 013204 79 SLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFD 158 (447)
Q Consensus 79 ~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~ 158 (447)
..++.+.+++.+ ..+.++|++++|+++++..+++... .++++.|++.+|.|......... .|...
T Consensus 61 ~~~lr~~ia~~~-~~~~~~I~~t~G~~~~l~~~~~~~~-------~~g~~~vlv~~p~y~~~~~~~~~-~g~~~------ 125 (364)
T PRK04781 61 PPGLRSALAALY-GCAPEQLLIGRGSDEAIDLLVRALC-------VPGRDAVLVTPPVFGMYAVCARL-QNAPL------ 125 (364)
T ss_pred HHHHHHHHHHHh-CcChHHEEEeCCHHHHHHHHHHHhc-------CCCCCeEEEcCCChHHHHHHHHH-cCCEE------
Confidence 567888888876 3567899999999999999988653 13336788878877544332222 12111
Q ss_pred CCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcC
Q 013204 159 LPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYD 238 (447)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g 238 (447)
..++..+. . +.+. .+++++.+.+. .+ ++.+|++...++.+|.+ .+.+.++++.+.|+ ++
T Consensus 126 ------~~v~~~~~------~---~~~~-~d~~~l~~~~~--~~-~~~lv~l~~p~NPTG~~-~~~~~~~~l~~~~~-~~ 184 (364)
T PRK04781 126 ------VEVPLVDG------A---DGFH-ADVPAIVAAAL--AS-NAKLVFLCSPSNPAGSA-IALDQIERALQALQ-GK 184 (364)
T ss_pred ------EEEecCCC------c---cCCC-cCHHHHHHHHh--cc-CCeEEEEcCCCCCCCCC-cCHHHHHHHHHhCC-CC
Confidence 11111000 0 0000 00234333222 12 33444443444445544 46677777777775 47
Q ss_pred CEEEEehhhcCCCccccccccccCCCCCCee---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcH
Q 013204 239 ILFIADEVICAFGRLGTMFGCDKYSIKPDLV---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHP 315 (447)
Q Consensus 239 ~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~ 315 (447)
+++|+||+|..|.... ......+..+.++ +|||.++-+++|+|++++++++++.+... ...+..+.
T Consensus 185 ~~iI~Deay~~f~~~~--~~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v~~~~l~~~l~~~---------~~~~~~~~ 253 (364)
T PRK04781 185 ALVVVDEAYGEFSDVP--SAVGLLARYDNLAVLRTLSKAHALAAARIGSLIANAELIAVLRRC---------QAPYPVPT 253 (364)
T ss_pred cEEEEeCcchhhcCCc--chHHHHhhCCCEEEEecChhhcccccceeeeeeCCHHHHHHHHhc---------cCCCCCCH
Confidence 9999999999774321 1111112224444 68999884339999999999999988642 12455566
Q ss_pred HHHHHHHHHHHHHh---hhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHH
Q 013204 316 VSCAVAIEALKIYK---ERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFG 392 (447)
Q Consensus 316 ~~~~aa~a~l~~~~---~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 392 (447)
+++.++.++|+.-. -.+..+.++++.+.+.+.|+++.... ...+..|.++.+.+.+ ...+.
T Consensus 254 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~--~~~p~~g~f~~~~~~~--------------~~~~~ 317 (364)
T PRK04781 254 PCAALAEQALSAPALAVTARRVAEVRAERERLHAALAQLPGVR--RVYPSQGNFLLVRFDD--------------AEAAF 317 (364)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--eECCCCCcEEEEEcCC--------------HHHHH
Confidence 67776666665311 11223445556666667776652211 1234567777777642 23577
Q ss_pred HHHHHcCceEEeeC------CEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 393 AQCEKHGMLVRVSG------DNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 393 ~~l~~~Gi~~~~~g------~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
+.|.++||.+.++. +.+|++ ..++++.++++++|++..
T Consensus 318 ~~l~~~gI~v~~~~~~~~~~~~~Ris---~~~~~~~~~l~~al~~~~ 361 (364)
T PRK04781 318 QALLAAGVVVRDQRAAPRLSDALRIT---LGTPEQNDRVLAALQRTQ 361 (364)
T ss_pred HHHHHCCeEEeeCCCCCCCCCeEEEe---CCCHHHHHHHHHHHHHHH
Confidence 88999999998762 469999 457899999999998754
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-15 Score=150.81 Aligned_cols=345 Identities=18% Similarity=0.202 Sum_probs=214.2
Q ss_pred CCCCEEEecCCccccccCCC-CCHHHHHHHHHHHhcCC----cccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCC
Q 013204 30 VNGKKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLP----FYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNS 103 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~s 103 (447)
.+....+||..++.. + .. ....+.+++.+...+.. ..+....+..+....+++.+..... ...+++|++|+|
T Consensus 86 ~~~~~~i~f~~g~p~-~-~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G 163 (459)
T COG1167 86 EDDPSVIDFAGGLPD-P-SLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSG 163 (459)
T ss_pred cCCCceecCCCCCCC-c-ccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCC
Confidence 344678888777521 1 22 23455555555554321 1222222334444555555552221 246679999999
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChh
Q 013204 104 GSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEE 183 (447)
Q Consensus 104 GseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (447)
..+|++.++++.. ..++.|++=+|+|++........+- .. ..++..+ .+.
T Consensus 164 ~q~al~l~~~~l~--------~pGd~v~vE~PtY~~~~~~~~~~g~-~~------------~~vp~d~------~G~--- 213 (459)
T COG1167 164 AQQALDLLLRLLL--------DPGDTVLVEDPTYPGALQALEALGA-RV------------IPVPVDE------DGI--- 213 (459)
T ss_pred HHHHHHHHHHHhC--------CCCCEEEEcCCCcHHHHHHHHHcCC-cE------------EecCCCC------CCC---
Confidence 9999999998774 3458899999999997543332221 10 1111111 011
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEEccc-cCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-cccc
Q 013204 184 EYSTRLANNLEDLILKEGPETIAAFIAEPV-IGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-GCDK 261 (447)
Q Consensus 184 ~~~~~~~~~le~~l~~~~~~~~a~vi~epv-~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~~~~ 261 (447)
++++|++.+... +++++.+.|. ++..|.+ .+.+--++|.++|++||+++|=|+.+..|...+.+- ....
T Consensus 214 -----~~e~le~~~~~~---~~k~~y~~P~~qNPtG~t-ms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ 284 (459)
T COG1167 214 -----DPEALEEALAQW---KPKAVYVTPTFQNPTGVT-MSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKA 284 (459)
T ss_pred -----CHHHHHHHHhhc---CCcEEEECCCCCCCCCCc-cCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHh
Confidence 138888888753 5678888886 5666644 467778899999999999999999999885554332 1222
Q ss_pred CCCCCC----eeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHH--Hhh--hcH
Q 013204 262 YSIKPD----LVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKI--YKE--RNI 333 (447)
Q Consensus 262 ~~~~~d----~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~--~~~--~~~ 333 (447)
+.- ++ +-+|||.+.-| +++|++++++++++.+... .+..+.+.+.+.+.+...-+.. ..+ ..+
T Consensus 285 ld~-~~rViy~gSFSK~l~Pg-lRlG~vv~p~~~~~~~~~~-------k~~~~~~~s~~~Q~~la~~l~~G~~~~hl~~l 355 (459)
T COG1167 285 LDA-PGRVIYLGSFSKTLAPG-LRLGYVVAPPELIEKLLRL-------KQAADLGPSSLSQAALAAFLLSGHYDRHLRRL 355 (459)
T ss_pred hCC-CCCEEEEeeehhhcccc-cceeeeeCCHHHHHHHHHH-------HHHhcCCCChHHHHHHHHHHHcCCHHHHHHHH
Confidence 111 23 23799999877 8999999999988887632 2334566666766554444431 000 223
Q ss_pred HHHHHHHHHHHHHhHhhccCCCceeeEee-eeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC------
Q 013204 334 VEQVNKIAPKFQDGVKAFSDSPIIGEIRG-TGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG------ 406 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g------ 406 (447)
+..++++.+.+.+.|++.. .+......+ -|.++++.++.... ...+.+.++++|+.+.+.|
T Consensus 356 R~~y~~rr~~l~~~L~~~~-~~~~~~~~p~gG~flwl~l~~~~~-----------~~~l~~~a~~~gv~i~~~g~~f~~~ 423 (459)
T COG1167 356 RREYARRRDALLEALAEYL-PELATWTRPEGGLFLWLELPEGID-----------ARELLAAALEKGVVVTPLGSAFSAD 423 (459)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCCeeeecCCceEEEEEEcCCCCC-----------HHHHHHHHHHCCCEEEcCCccccCC
Confidence 3344444444444444431 123333333 36777888876431 4568899999999999832
Q ss_pred ----CEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 407 ----DNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 407 ----~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
+.+|++.. ..++++|++++++|.+++.+..
T Consensus 424 ~~~~~~~Rl~~s-~~~~e~i~~gi~~l~~~~~~~~ 457 (459)
T COG1167 424 GDPRNGLRLSFS-SPSEEEIEEGIKRLAALLREAA 457 (459)
T ss_pred CCCCCeEEEEcC-CCCHHHHHHHHHHHHHHHHHHh
Confidence 46999976 4569999999999999987753
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.7e-16 Score=152.37 Aligned_cols=287 Identities=11% Similarity=0.074 Sum_probs=169.2
Q ss_pred CeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC-Cccc
Q 013204 96 AKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP-HYWR 174 (447)
Q Consensus 96 ~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 174 (447)
+++++++|+++++..+++++. ..++.|++.+|+|...........|... ..++.. +.+
T Consensus 70 ~~I~it~G~~~al~~~~~~l~--------~~gd~Vlv~~P~y~~~~~~~~~~~g~~v------------v~v~~~~~~~- 128 (388)
T PRK08637 70 SLPIVTNALTHGLSLVADLFV--------DQGDTVLLPDHNWGNYKLTFNTRRGAEI------------VTYPIFDEDG- 128 (388)
T ss_pred ceeeEccchHHHHHHHHHHhc--------CCCCEEEEcCCCCccHHHHHHHhcCCEE------------EEecccCCCC-
Confidence 578999999999999988763 3347899999999887643222222211 111110 000
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh-CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHh-----cCCEEEEehhhc
Q 013204 175 YAHPGETEEEYSTRLANNLEDLILKE-GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKK-----YDILFIADEVIC 248 (447)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~le~~l~~~-~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~-----~g~~li~DEv~~ 248 (447)
. .+++++++.+... .+.+...++..|.|++| ...+.+.+++|.++|++ |++++|.||+|.
T Consensus 129 ---------~---~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG--~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~ 194 (388)
T PRK08637 129 ---------G---FDTDALKEALQAAYNKGKVIVILNFPNNPTG--YTPTEKEATAIVEAIKELADAGTKVVAVVDDAYF 194 (388)
T ss_pred ---------c---CCHHHHHHHHHhhccCCCEEEEEeCCCCCCC--CCCCHHHHHHHHHHHHHHHhcCCcEEEEecccch
Confidence 0 0146777766521 12233344455666666 56788999999999885 999999999999
Q ss_pred CCCcccccc-c-cc-cCCCCCCe--e---eecccCCCcccceeEEEeC------hhHHHHhhhccCCCCccCcCCCCCCc
Q 013204 249 AFGRLGTMF-G-CD-KYSIKPDL--V---SFAKALSSAYMPIGAILVS------PEVSEVIHSQSNTLGSFSHGFTYSGH 314 (447)
Q Consensus 249 g~g~~g~~~-~-~~-~~~~~~d~--v---~~sK~l~gg~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~t~~~~ 314 (447)
+|...+... . .. ..+....+ + ++||.++.+++|+|+++.+ +++++.+..... .......+..+
T Consensus 195 ~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~s 271 (388)
T PRK08637 195 GLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFGTKAGSSQTVKEALEKKVK---GLIRSNISNGP 271 (388)
T ss_pred hcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEccccCCcHHHHHHHHHHHH---HHhhcccCCCC
Confidence 885444321 1 11 11222232 2 5899877655999999854 577776642100 00111223556
Q ss_pred HHHHHHHHHHHHHHhhhcHHHH-------HHHHHHHHHHhHhhccCCCceeeEee-eeeEEEEEeecCCCCCCCCCCCcc
Q 013204 315 PVSCAVAIEALKIYKERNIVEQ-------VNKIAPKFQDGVKAFSDSPIIGEIRG-TGLILGTEFADNKSPNEPFPPEWG 386 (447)
Q Consensus 315 ~~~~~aa~a~l~~~~~~~~~~~-------~~~~~~~l~~~L~~l~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~ 386 (447)
.+++.++.+.++ ...+..+ ++++.+.+.+.|++....+.+...+. .|.++.+.+...
T Consensus 272 ~~~q~a~~~~l~---~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~~~------------ 336 (388)
T PRK08637 272 HPSQSAVLRALN---SPEFDKEKQEKFQILKERYEKTKEVLYDGKYDDAWQAYPFNSGYFMCLKLKGV------------ 336 (388)
T ss_pred cHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccccceEEEEecCChH------------
Confidence 778887777764 2222222 33333334444433210012222333 355666666421
Q ss_pred hHHHHHHHHH-HcCceEEeeC-CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 387 IGAYFGAQCE-KHGMLVRVSG-DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 387 ~~~~~~~~l~-~~Gi~~~~~g-~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
....+.+.|+ ++||.+...+ +.+||+... .+++++++++++|.++++.+
T Consensus 337 ~~~~l~~~l~~~~gv~~~~~~~~~iRi~~~~-~~~~~i~~~~~~l~~~~~~~ 387 (388)
T PRK08637 337 DAEELRVHLLEKYGIGTIALNETDLRIAFSC-VEEEDIPELFDSIYKAIKDL 387 (388)
T ss_pred HHHHHHHHHhhhcceEEEeccCCceEEEeec-CCHHHHHHHHHHHHHHHHhc
Confidence 1345778875 6799877654 469999543 68999999999999988764
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-15 Score=148.31 Aligned_cols=338 Identities=18% Similarity=0.183 Sum_probs=186.7
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHh--cC-Ccccc-c--CcC-CChHHHHHHHHHHHhcCcCCCCeEEEeCChh
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLN--TL-PFYHS-F--WNR-TTKPSLDLAKELLEMFTASKMAKVFFTNSGS 105 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~--~~-~~~~~-~--~~~-~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGs 105 (447)
+.|+|..+. +..++.+.+++.+... +. ...+. . +.. ..+...++++.+++++ +.+.+.++|++||+
T Consensus 4 ~iyld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~-g~~~~~v~~~~g~t 76 (404)
T PRK14012 4 PIYLDYSAT------TPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLI-GADPREIVFTSGAT 76 (404)
T ss_pred eEEecCcCC------CCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHc-CcCcCeEEEeCCHH
Confidence 468887544 4578999999988875 21 11110 0 000 1234556777888776 34567899999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcc--cCCccccCCCCCCCCcceecCCCCcccCCCCCCChh
Q 013204 106 EANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASL--SGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEE 183 (447)
Q Consensus 106 eA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (447)
+|+..+++.+.... .+.++.|++....|+......... .|.. +..++.++.+
T Consensus 77 ~al~~~l~~l~~~~----~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~------------~~~v~~~~~g---------- 130 (404)
T PRK14012 77 ESDNLAIKGAAHFY----QKKGKHIITSKTEHKAVLDTCRQLEREGFE------------VTYLDPQSNG---------- 130 (404)
T ss_pred HHHHHHHHHHHHhh----cCCCCEEEEecCccHHHHHHHHHHHhCCCE------------EEEEccCCCC----------
Confidence 99999988653210 022356766655554432211111 1211 1112211110
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCC
Q 013204 184 EYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYS 263 (447)
Q Consensus 184 ~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~ 263 (447)
..+++++++.+. .++++|++..+++.+|.+.+ +++|.++|++||+++|+|++|+ +|... +....
T Consensus 131 ---~~d~~~l~~~i~----~~t~lv~~~~~~n~tG~~~~----~~~I~~la~~~g~~vivD~a~~-~g~~~----~~~~~ 194 (404)
T PRK14012 131 ---IIDLEKLEAAMR----DDTILVSIMHVNNEIGVIQD----IAAIGEICRERGIIFHVDAAQS-VGKVP----IDLSK 194 (404)
T ss_pred ---cCCHHHHHHhcC----CCCEEEEEECcCCCccchhh----HHHHHHHHHHcCCEEEEEcchh-cCCcc----cCccc
Confidence 011367777664 34568888888888888877 8999999999999999999997 44331 11223
Q ss_pred CCCCeeeec--ccCCCcccceeEEEeChhHHHHhhhcc---CCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHH
Q 013204 264 IKPDLVSFA--KALSSAYMPIGAILVSPEVSEVIHSQS---NTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQ 336 (447)
Q Consensus 264 ~~~d~v~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~ 336 (447)
..+|++++| |.++ + .++|+++.+++....+.... .....+. ..+.+.....+..++++.+. .++..++
T Consensus 195 ~~~D~~~~s~~K~~g-p-~g~G~l~~~~~~~~~~~~~~~g~~~~~~~~---~gt~~~~~~~~l~~al~~~~~~~~~~~~~ 269 (404)
T PRK14012 195 LKVDLMSFSAHKIYG-P-KGIGALYVRRKPRVRLEAQMHGGGHERGMR---SGTLPTHQIVGMGEAARIAKEEMATENER 269 (404)
T ss_pred CCCCEEEEehhhccC-C-CceEEEEEecCCCCCCCceecCCCccCCcc---CCCcCHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 458998887 9554 3 36888888776432221100 0000011 11223333333334454432 2334566
Q ss_pred HHHHHHHHHHhHhhccCCCceeeEe-eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEE------------
Q 013204 337 VNKIAPKFQDGVKAFSDSPIIGEIR-GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR------------ 403 (447)
Q Consensus 337 ~~~~~~~l~~~L~~l~~~~~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~------------ 403 (447)
.+++.+++.+.|+++....+..... .......+.+.... ...+...|. ++.+.
T Consensus 270 ~~~l~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~--~~~i~~g~~~~~~~~~~ 335 (404)
T PRK14012 270 IRALRDRLWNGIKDIEEVYLNGDLEQRVPGNLNVSFNYVE------------GESLIMALK--DLAVSSGSACTSASLEP 335 (404)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCccccCCCEEEEEEeCcC------------HHHHHHhCC--CeEEEchhhhCCCCCCC
Confidence 6777777777776652211111100 11111112222111 112333332 22221
Q ss_pred ------------eeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 404 ------------VSGDNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 404 ------------~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
...+.||++++..+|++|+|++++.|+++++.++.
T Consensus 336 ~~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~~~ 382 (404)
T PRK14012 336 SYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRKSIGKLRE 382 (404)
T ss_pred CHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 11256999999999999999999999999887753
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-16 Score=157.34 Aligned_cols=351 Identities=13% Similarity=0.111 Sum_probs=179.1
Q ss_pred CCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHH-HHHHhcCc--CCCC--eEEEeCChhhHHHHHHHHHHHHHHhc
Q 013204 48 GGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAK-ELLEMFTA--SKMA--KVFFTNSGSEANDTQVKLVWYYNNAL 122 (447)
Q Consensus 48 G~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~~--~~~~--~v~~~~sGseA~~~Al~~~~~~~~~~ 122 (447)
+..+|+++.++.+.+.. ..+ +...+..+...++++ .+.+.+.. ...+ +|++++|+++|+..++..+.....
T Consensus 105 ~~~~~~~~~~~~~~~~~-~~Y-~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~~l-- 180 (521)
T TIGR03801 105 GFDPDAFLYEMCDGIIG-DNY-PVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKANEL-- 180 (521)
T ss_pred CCCCCHHHHHHHHHhhc-CCC-CCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHhhc--
Confidence 44567777887777632 222 211222233334433 22322211 2333 899999999999998875311100
Q ss_pred CCCCcceEEEEcCCCccchhhhhccc-CCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhC
Q 013204 123 GRPNKKKFIARQKSYHGSTLIAASLS-GLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEG 201 (447)
Q Consensus 123 ~~~~~~~vi~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~ 201 (447)
. ..+++|++.+|.|..+...+.... +... ..+++..... ....+ |. .+.+++++++.
T Consensus 181 l-~pGD~Vlv~~P~y~~y~~~~~l~~~g~~v------------v~i~~~~~~~--~g~~~---~~-~d~~~l~~~~~--- 238 (521)
T TIGR03801 181 L-KKGDKIALMTPIFTPYLEIPELPRYDFEV------------VRIKADEMTE--DGTHT---WQ-YPDKELEKLRD--- 238 (521)
T ss_pred C-CCCCEEEEeCCCcHHHHHHHHHhcCCcEE------------EEeecccccc--ccccc---CC-CCHHHHHHhcC---
Confidence 1 335889999999988754433221 1111 1111110000 00000 00 01255665443
Q ss_pred CCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhc--CCEEEEehhhcCCCccccccccccCCCCCC-ee---eecccC
Q 013204 202 PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKY--DILFIADEVICAFGRLGTMFGCDKYSIKPD-LV---SFAKAL 275 (447)
Q Consensus 202 ~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~--g~~li~DEv~~g~g~~g~~~~~~~~~~~~d-~v---~~sK~l 275 (447)
++..++++++|.|++| ...+.+.+++|.++|++| ++++|.||+|..|.. .... .....|+ ++ +|||.+
T Consensus 239 ~~~kai~l~nP~NPTG--~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~--~~~s--l~~~~~~~vI~v~SfSK~f 312 (521)
T TIGR03801 239 PSIKALFVVNPSNPPS--VAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD--DFRS--LFAELPYNTIGVYSFSKYF 312 (521)
T ss_pred CCCcEEEEeCCCCCCC--CCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc--cccc--hhhhCCCCEEEEEcchhhc
Confidence 3344566678887777 566889999999999987 999999999987742 1111 1111232 22 589988
Q ss_pred CCcccceeEEEeChh-HHH------------HhhhccC-----------------CCCccCcCCCCCCcHHHHH-----H
Q 013204 276 SSAYMPIGAILVSPE-VSE------------VIHSQSN-----------------TLGSFSHGFTYSGHPVSCA-----V 320 (447)
Q Consensus 276 ~gg~~~~g~~~~~~~-~~~------------~~~~~~~-----------------~~~~~~~~~t~~~~~~~~~-----a 320 (447)
+..+|++|+++++++ +++ .+..... ..+.+...++.+.+...+. +
T Consensus 313 g~~G~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a 392 (521)
T TIGR03801 313 GATGWRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFS 392 (521)
T ss_pred cCchhhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHH
Confidence 755599999999764 221 1110000 0001111123333322222 3
Q ss_pred HHHHHHHHhhhcHH----HHHHHHHHHHHHhHhhccCCCceeeEeee-eeEEEEEeecCCC--CCCCCCC---CcchHHH
Q 013204 321 AIEALKIYKERNIV----EQVNKIAPKFQDGVKAFSDSPIIGEIRGT-GLILGTEFADNKS--PNEPFPP---EWGIGAY 390 (447)
Q Consensus 321 a~a~l~~~~~~~~~----~~~~~~~~~l~~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~--~~~~~~~---~~~~~~~ 390 (447)
+.+.++. .+... +.++++.+.+.+.| +.+.. ..... +.++.+++..... ....|.. .......
T Consensus 393 ~~all~~--~~~y~~~~~~~~~~R~~~l~~~L----g~~~~-~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~ 465 (521)
T TIGR03801 393 LFALMDK--ENAYKAETKDICRRREKLLFRGL----GLPLQ-EDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVD 465 (521)
T ss_pred HHHHhcc--chhHHHHHHHHHHHHHHHHHHhc----CCCCc-CCCCCeEEEEEeehHHHHHHhcchHHHHHHhccCCHHH
Confidence 3344431 12222 23333333333333 11111 12233 4555666653110 0000000 0001234
Q ss_pred HHHHHH-HcCceEEeeC------CEEEEecCCC-CCHHHHHHHHHHHHHHHHHHHHH
Q 013204 391 FGAQCE-KHGMLVRVSG------DNIMMSPPFI-MSPEEVDELISKYGKALKATEER 439 (447)
Q Consensus 391 ~~~~l~-~~Gi~~~~~g------~~iR~~~~~~-~t~e~i~~~~~~l~~~l~~~~~~ 439 (447)
+..+|+ +.||.+.|+. ..+|++ +. .+++++.++.++|.+.+.+..++
T Consensus 466 ~~~~L~~e~gV~v~PG~~Fg~~~~~vRis--la~l~~~~~~~~~~rl~~~~~~~~~~ 520 (521)
T TIGR03801 466 VLFRLAEETGIVLLPGGGFGGPEWSVRVS--LANLNEYDYAEIGRAIRKILDEYYEA 520 (521)
T ss_pred HHHHHHHhCCEEEeCchhcCCCCCeEEEE--ecCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 555554 6699998863 469999 54 68999999999999999877653
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-16 Score=139.89 Aligned_cols=326 Identities=16% Similarity=0.126 Sum_probs=205.7
Q ss_pred EEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHH
Q 013204 34 KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVK 113 (447)
Q Consensus 34 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~ 113 (447)
...|+-|..-+.| -.+++++|.++.-.-.. .+..+-..+|+++.++++ +++..+|++|||.+|..||+
T Consensus 22 ~~vDLRSDTvT~P----TdeMr~am~eA~vgDdV-----yGeD~tt~rLE~~vA~l~---GKEAgLFv~SGTmgNllaIm 89 (384)
T KOG1368|consen 22 RSVDLRSDTVTVP----TDEMRRAMAEASVGDDV-----YGEDPTTNRLEQRVAELF---GKEAGLFVPSGTMGNLLAIM 89 (384)
T ss_pred eccccccccccCC----hHHHHHHHhhcccCccc-----ccCCccHHHHHHHHHHHh---CccceeeecccccccHHHHH
Confidence 4577777654332 45777787776532111 224556778999999997 77889999999999999998
Q ss_pred HHHHHHHhcCCCCcceEEEEcCCCccc--hhhhhc-ccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHH
Q 013204 114 LVWYYNNALGRPNKKKFIARQKSYHGS--TLIAAS-LSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190 (447)
Q Consensus 114 ~~~~~~~~~~~~~~~~vi~~~~~yhg~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (447)
.=+. .+...+|+ ....|-+ ..+.++ +++.. ..+..+ ++ -+..++
T Consensus 90 ~Hc~-------~rg~eii~-gd~~HI~~~E~gg~s~l~gv~--------------~~tv~~--------e~---dgtm~l 136 (384)
T KOG1368|consen 90 VHCH-------QRGSEIIV-GDRAHIHRYEQGGISQLAGVH--------------VRTVKN--------EN---DGTMDL 136 (384)
T ss_pred HHhc-------CCCceEEe-ccchheeehhccChhhhccce--------------eEeeee--------CC---CCeeeH
Confidence 6431 12344444 4444444 222222 11111 011100 00 011125
Q ss_pred HHHHHHHHh----hCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCC--
Q 013204 191 NNLEDLILK----EGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSI-- 264 (447)
Q Consensus 191 ~~le~~l~~----~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~-- 264 (447)
+++|+.+.. ++...+.+|.+|......|..+.|-+|+.++.++|++||+.|++|-+.- | .+....|+
T Consensus 137 edIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi-~------NAavasgV~v 209 (384)
T KOG1368|consen 137 EDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARI-F------NAAVASGVPV 209 (384)
T ss_pred HHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhh-h------hHHHHcCCCH
Confidence 888888763 2334678999999877767688899999999999999999999995422 1 11112222
Q ss_pred -----CCCe--eeecccCCCccccee-EEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHH
Q 013204 265 -----KPDL--VSFAKALSSAYMPIG-AILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQ 336 (447)
Q Consensus 265 -----~~d~--v~~sK~l~gg~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~ 336 (447)
..|- +|+||+|+. |+| ++++++++++..+..... .++-+-..-+-+++|+.+|+. ....+..
T Consensus 210 k~i~~~fDSVsiCLSKglgA---PVGSViVG~k~FI~kA~~~RKa-----lGGGmRQsGvLaaaaLval~~--~~~~L~~ 279 (384)
T KOG1368|consen 210 KKICSAFDSVSICLSKGLGA---PVGSVIVGSKDFIDKARHFRKA-----LGGGMRQSGVLAAAALVALDE--NVPLLRA 279 (384)
T ss_pred HHHHHhhhhhhhhhhccCCC---CcccEEEccHHHHHHHHHHHHH-----hcCchhHHHHHHHHHHHHhhc--chHHHHH
Confidence 2343 489999985 566 556788887765432111 122333344566777777763 2235667
Q ss_pred HHHHHHHHHHhHhhccCCCceeeEe-eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEEEecC
Q 013204 337 VNKIAPKFQDGVKAFSDSPIIGEIR-GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIMMSPP 414 (447)
Q Consensus 337 ~~~~~~~l~~~L~~l~~~~~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR~~~~ 414 (447)
..++...+.+.++...+.+ ..+. -+..++.+.+....- ..+.++..+.+.|+++.++. .++|+..+
T Consensus 280 dHk~A~~lAe~~~~~~~i~--v~v~a~etNiv~~~l~q~~~----------~~~~l~~~~~k~gi~lm~~~s~r~Rivlh 347 (384)
T KOG1368|consen 280 DHKRAKELAEYINTPEEIR--VEVPAVETNIVNMVLCQARL----------TAEELCKFLEKNGILLMGGASRRIRIVLH 347 (384)
T ss_pred HHHHHHHHHHHhcccccee--eecchhhcceeeeecccccC----------CHHHHHHHHHHCCeEEeeccccceEEEEE
Confidence 7777888888777653222 2332 344555655544331 25678999999999988764 45999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 013204 415 FIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 415 ~~~t~e~i~~~~~~l~~~l 433 (447)
.-.|+++++.++..|.+.+
T Consensus 348 ~Qvt~~~ve~~~~~~~k~~ 366 (384)
T KOG1368|consen 348 HQVTDEDVEYVKSVLSKKF 366 (384)
T ss_pred EecCHHHHHHHHHHHHHHH
Confidence 9999999999999995443
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-15 Score=148.75 Aligned_cols=333 Identities=15% Similarity=0.133 Sum_probs=183.1
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHh-cCCcccc---cCcCCChHHHHHHH----HHHHhcCcCCCCeEEEeCCh
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLN-TLPFYHS---FWNRTTKPSLDLAK----ELLEMFTASKMAKVFFTNSG 104 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~~~~~~---~~~~~~~~~~~l~~----~l~~~~~~~~~~~v~~~~sG 104 (447)
+..+++.++.. + -+|++.+++...+. ..+..+. ...+ .+...++++ .+++.+. .+...++ .+||
T Consensus 25 ~~~~~l~~~~n--~---~~~~v~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~la~~~g-~~~~~i~-~~sg 96 (416)
T PRK00011 25 EEHIELIASEN--F---VSPAVMEAQGSVLTNKYAEGYPGKRYYGG-CEYVDVVEQLAIDRAKELFG-AEYANVQ-PHSG 96 (416)
T ss_pred hcCeeeecccC--c---CCHHHHHHHhchhhcccccCCCCcccccc-chHHHHHHHHHHHHHHHHhC-CCceeee-cCCc
Confidence 56788876642 2 58999999877653 2211111 1111 122333433 5666653 3333444 4578
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhh--hhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCCh
Q 013204 105 SEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLI--AASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETE 182 (447)
Q Consensus 105 seA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (447)
++|+..+++.+. .++++|++..+.|.+.... .....+.. . .+..++....
T Consensus 97 t~al~~~l~~l~--------~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g-----~-----~~~~~~~~~~---------- 148 (416)
T PRK00011 97 SQANAAVYFALL--------KPGDTILGMDLAHGGHLTHGSPVNFSGKL-----Y-----NVVSYGVDEE---------- 148 (416)
T ss_pred hHHHHHHHHHhc--------CCCCEEEEeccccCCccccccccccccce-----e-----eEeecCcCcc----------
Confidence 999999888663 2347888888887554211 11111100 0 0011111000
Q ss_pred hHHHHHHHHHHHHHHHhhCCCcEEEEEE-ccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccccccc
Q 013204 183 EEYSTRLANNLEDLILKEGPETIAAFIA-EPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDK 261 (447)
Q Consensus 183 ~~~~~~~~~~le~~l~~~~~~~~a~vi~-epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~ 261 (447)
....+++++++.+... ++.+|++ .+++ |...+ +++|.++|++||+++|+|++|. +|..+.......
T Consensus 149 --~~~~d~~~l~~~i~~~---~~k~v~~~~~~~---~~~~~----~~~I~~la~~~~~~livD~a~~-~g~~~~g~~~~~ 215 (416)
T PRK00011 149 --TGLIDYDEVEKLALEH---KPKLIIAGASAY---SRPID----FKRFREIADEVGAYLMVDMAHI-AGLVAAGVHPSP 215 (416)
T ss_pred --cCCcCHHHHHHHHHhc---CCCEEEECCCcC---CCccC----HHHHHHHHHHcCCEEEEECcch-hcccccCccCCC
Confidence 0112247788777531 3345555 3333 33334 8999999999999999999985 333321110111
Q ss_pred CCCCCCee--eecccCCCcccceeEEEeC-hhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHH-HHHhh--hcHHH
Q 013204 262 YSIKPDLV--SFAKALSSAYMPIGAILVS-PEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEAL-KIYKE--RNIVE 335 (447)
Q Consensus 262 ~~~~~d~v--~~sK~l~gg~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l-~~~~~--~~~~~ 335 (447)
.+ ..|++ +++|+++| ++.|+++++ +++.+.+.... ..+...++....+++...++ +.+++ ++..+
T Consensus 216 ~~-~~di~~~S~~K~l~g--~~gg~i~~~~~~~~~~l~~~~------~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~ 286 (416)
T PRK00011 216 VP-HADVVTTTTHKTLRG--PRGGLILTNDEELAKKINSAV------FPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQ 286 (416)
T ss_pred CC-CCcEEEecCCcCCCC--CCceEEEeCCHHHHHHHHHHh------CccccCCccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 12 35766 46799965 678899985 68888776321 11111112222333333333 33221 44667
Q ss_pred HHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEe----e------
Q 013204 336 QVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV----S------ 405 (447)
Q Consensus 336 ~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~----~------ 405 (447)
+.+++.+++++.|+++ +..+.. -...+.++.+.+.+... ....+.+.|.++||.+.. .
T Consensus 287 ~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~i~~~~~~~----------~~~~~~~~L~~~GI~v~~~~~p~~~~~~~ 354 (416)
T PRK00011 287 QVVKNAKALAEALAER-GFRVVS-GGTDNHLVLVDLRSKGL----------TGKEAEAALEEANITVNKNAVPFDPRSPF 354 (416)
T ss_pred HHHHHHHHHHHHHHhC-CCeeee-cCCCCeEEEEeCcccCC----------CHHHHHHHHHHcCcEEccCcCCCCCCCCC
Confidence 8888888999988875 222211 01223455555532210 134577888899999873 1
Q ss_pred -CCEEEEecC----CCCCHHHHHHHHHHHHHHHHH
Q 013204 406 -GDNIMMSPP----FIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 406 -g~~iR~~~~----~~~t~e~i~~~~~~l~~~l~~ 435 (447)
...+|++.. ..++++|++++++.|++++..
T Consensus 355 ~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~~~ 389 (416)
T PRK00011 355 VTSGIRIGTPAITTRGFKEAEMKEIAELIADVLDN 389 (416)
T ss_pred CCCceEecCHHHhhcCcCHHHHHHHHHHHHHHHhc
Confidence 235898642 257899999999999988755
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-15 Score=150.26 Aligned_cols=333 Identities=19% Similarity=0.142 Sum_probs=182.0
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHh-cCCccc--ccCcCCChHH---HHHH-HHHHHhcCcCCCCeEEEeCChh
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLN-TLPFYH--SFWNRTTKPS---LDLA-KELLEMFTASKMAKVFFTNSGS 105 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~~~~~--~~~~~~~~~~---~~l~-~~l~~~~~~~~~~~v~~~~sGs 105 (447)
+++|.+..+.. .-+|++++++.+.+. ...... .......+.. .+.+ +.+.+++. .+...+ +.+||+
T Consensus 19 ~~~~~~~~~~~-----~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g-~~~~~v-~~~sgt 91 (402)
T cd00378 19 RETLELIASEN-----FTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFG-AEYANV-QPHSGS 91 (402)
T ss_pred HhCeeeeccCC-----cCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhC-CCceee-ecCCcH
Confidence 55777765542 248999999987652 321111 1111112222 2322 33445553 333334 445799
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh----hcccCCccccCCCCCCCCcceecCCCCcccCCCCCCC
Q 013204 106 EANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA----ASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGET 181 (447)
Q Consensus 106 eA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (447)
+|+..++..+. ..+++|++.++.|.+..... +...|.. +..++++.. +
T Consensus 92 ~a~~~~l~~l~--------~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~------------~~~~~~~~~-----~--- 143 (402)
T cd00378 92 QANLAVYFALL--------EPGDTIMGLDLSHGGHLTHGSFTKVSASGKL------------FESVPYGVD-----P--- 143 (402)
T ss_pred HHHHHHHHHhc--------CCCCEEEEecCccCcccccccccccccccee------------EEEecCCcC-----c---
Confidence 99999998764 23478999898886553211 1111100 011111100 0
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhh-cCCCcccc-cccc
Q 013204 182 EEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVI-CAFGRLGT-MFGC 259 (447)
Q Consensus 182 ~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~-~g~g~~g~-~~~~ 259 (447)
+ ....+++++++.+... +...++++.+.++ ...+ +++|.++|++||+++|+||+| .|+...|. ....
T Consensus 144 -~-~~~id~~~l~~~i~~~--~~~~v~~~~~~~~---~~~~----~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~ 212 (402)
T cd00378 144 -E-TGLIDYDALEKMALEF--KPKLIVAGASAYP---RPID----FKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPL 212 (402)
T ss_pred -c-cCCcCHHHHHHHHHhC--CCCEEEecCcccC---CCcC----HHHHHHHHHhcCCEEEEEccchhhhhhcccCCCcc
Confidence 0 0011247777777532 2223344455443 3333 899999999999999999996 44322221 1111
Q ss_pred ccCCCCCCee--eecccCCCcccceeEEEeCh-hHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh---hhcH
Q 013204 260 DKYSIKPDLV--SFAKALSSAYMPIGAILVSP-EVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK---ERNI 333 (447)
Q Consensus 260 ~~~~~~~d~v--~~sK~l~gg~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~---~~~~ 333 (447)
. ..|++ +++|+++| ++.|++++++ ++++.+.... ......+..+..++++..++.... -++.
T Consensus 213 ~----~~dv~~~s~sK~l~G--~~gg~i~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~ 280 (402)
T cd00378 213 P----GADVVTTTTHKTLRG--PRGGLILTRKGELAKKINSAV------FPGLQGGPHLHVIAAKAVALKEALEPEFKAY 280 (402)
T ss_pred c----CCcEEEeccccCCCC--CCceEEEeccHHHHHHHHHHh------CccccCCchHHHHHHHHHHHHHHhhHHHHHH
Confidence 1 34765 46799954 6889999876 8888775321 001111112223333233333222 2345
Q ss_pred HHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEe---------
Q 013204 334 VEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV--------- 404 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~--------- 404 (447)
.+++.++.+++++.|+++ +..+.. ....+.++.+.+..... ....+.+.|.++||.+.+
T Consensus 281 ~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~v~v~~~~~~~----------~~~~~~~~l~~~gI~v~~~~~p~~~~~ 348 (402)
T cd00378 281 AKQVVENAKALAEALKER-GFKVVS-GGTDNHLVLVDLRPKGI----------TGKAAEDALEEAGITVNKNTLPWDPSS 348 (402)
T ss_pred HHHHHHHHHHHHHHHHhC-CCeEee-cCCCCeEEEEeCCccCC----------CHHHHHHHHHHcCcEEcCCcCCCCCCC
Confidence 677778888888888775 322221 11235555666653211 123466778888999963
Q ss_pred --eCCEEEEecCCC----CCHHHHHHHHHHHHHHHHH
Q 013204 405 --SGDNIMMSPPFI----MSPEEVDELISKYGKALKA 435 (447)
Q Consensus 405 --~g~~iR~~~~~~----~t~e~i~~~~~~l~~~l~~ 435 (447)
....+|++++.. ++++||+++++.|++++++
T Consensus 349 ~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~~~ 385 (402)
T cd00378 349 PFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALKD 385 (402)
T ss_pred CCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence 124699987653 4799999999999998764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-15 Score=147.34 Aligned_cols=305 Identities=15% Similarity=0.149 Sum_probs=182.8
Q ss_pred HHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcC
Q 013204 56 AAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQK 135 (447)
Q Consensus 56 ~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~ 135 (447)
+++.+.+....+ ...+...++++.+++++. .+++++++||++|+..+++.+. . ..+++|++..+
T Consensus 3 ~~~~~~~~~~~~------~~~~~~~~~~~~la~~~~---~~~~~~~~sgt~al~~~l~~l~------~-~~gd~vl~~~~ 66 (352)
T cd00616 3 EAVEEVLDSGWL------TLGPKVREFEKAFAEYLG---VKYAVAVSSGTAALHLALRALG------I-GPGDEVIVPSF 66 (352)
T ss_pred HHHHHHHHcCCc------cCCHHHHHHHHHHHHHhC---CCeEEEECCHHHHHHHHHHHcC------C-CCCCEEEeCCc
Confidence 455555554322 134568899999999973 4579999999999999998762 1 23478888888
Q ss_pred CCccchhhhhcccCCccccCCCCCCCCcceecCCCC-cccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEcccc
Q 013204 136 SYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH-YWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVI 214 (447)
Q Consensus 136 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~ 214 (447)
.||+........ |... ..++... .+ ..+++++++.+. +++++|++.+.
T Consensus 67 ~~~~~~~~~~~~-g~~~------------~~~~~~~~~~-------------~~d~~~l~~~i~----~~~~~v~~~~~- 115 (352)
T cd00616 67 TFVATANAILLL-GATP------------VFVDIDPDTY-------------NIDPELIEAAIT----PRTKAIIPVHL- 115 (352)
T ss_pred chHHHHHHHHHc-CCeE------------EEEecCCCcC-------------CcCHHHHHHhcC----cCCeEEEEECC-
Confidence 888765433322 2111 1111110 00 011366666553 34566666543
Q ss_pred CCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec----ccCCCcccceeEEEeC-h
Q 013204 215 GAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA----KALSSAYMPIGAILVS-P 289 (447)
Q Consensus 215 ~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s----K~l~gg~~~~g~~~~~-~ 289 (447)
.|...+ +++|.++|++||+++|+|++|+ +|.... ....+...|+.++| |.+++| ..|+++.+ +
T Consensus 116 --~G~~~~----~~~i~~l~~~~~i~li~D~a~~-~g~~~~---~~~~~~~~d~~~~S~~~~K~~~~~--~gg~~~~~~~ 183 (352)
T cd00616 116 --YGNPAD----MDAIMAIAKRHGLPVIEDAAQA-LGATYK---GRKVGTFGDAGAFSFHPTKNLTTG--EGGAVVTNDE 183 (352)
T ss_pred --CCCcCC----HHHHHHHHHHcCCeEEEECCCC-CCCeEC---CEEcccCcceeEEcCCCCCCCccc--CceEEEECCH
Confidence 455554 8999999999999999999997 433211 11223335777765 988653 45666665 5
Q ss_pred hHHHHhhhccCCCC--------ccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEe
Q 013204 290 EVSEVIHSQSNTLG--------SFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIR 361 (447)
Q Consensus 290 ~~~~~~~~~~~~~~--------~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~ 361 (447)
++.+.+........ ....+.++..+++.++.++..++.+ ++..++.+++.+++++.|+++.+..++....
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~ 261 (352)
T cd00616 184 ELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQLEKL--DEIIARRREIAERYKELLADLPGIRLPDVPP 261 (352)
T ss_pred HHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHhcCCCCccCCCCCC
Confidence 77665542110000 0011123344566666666555433 4456777888888988888764433322211
Q ss_pred ---eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee----------------------------CCEEE
Q 013204 362 ---GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS----------------------------GDNIM 410 (447)
Q Consensus 362 ---~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----------------------------g~~iR 410 (447)
....++.+.+...... ....+.+.|.++||.+... .+.+|
T Consensus 262 ~~~~~~~~~~~~~~~~~~~---------~~~~v~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~ 332 (352)
T cd00616 262 GVKHSYHLYVIRLDPEAGE---------SRDELIEALKEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLS 332 (352)
T ss_pred CCceeeEEEEEEECCcCCC---------CHHHHHHHHHHCCCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeEE
Confidence 1233445555421000 1456888999999976521 03699
Q ss_pred EecCCCCCHHHHHHHHHHHH
Q 013204 411 MSPPFIMSPEEVDELISKYG 430 (447)
Q Consensus 411 ~~~~~~~t~e~i~~~~~~l~ 430 (447)
++++..+|++||++++++|+
T Consensus 333 l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 333 LPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred ccCCCCCCHHHHHHHHHHhC
Confidence 99999999999999999874
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.75 E-value=5e-16 Score=150.03 Aligned_cols=291 Identities=15% Similarity=0.098 Sum_probs=160.9
Q ss_pred ChHHHHHHHHHHHhcCcC-CCCeEEEeCChhhHHHHHHHHHHHHHHh----cC-CCCcceEEEEcCCCccchhhhhcccC
Q 013204 76 TKPSLDLAKELLEMFTAS-KMAKVFFTNSGSEANDTQVKLVWYYNNA----LG-RPNKKKFIARQKSYHGSTLIAASLSG 149 (447)
Q Consensus 76 ~~~~~~l~~~l~~~~~~~-~~~~v~~~~sGseA~~~Al~~~~~~~~~----~~-~~~~~~vi~~~~~yhg~~~~~~~~~~ 149 (447)
.+...++++++.+++... ....++|++||++|+..++..++..... .+ .++.+.+|+.+..+|.+........+
T Consensus 37 ~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~g 116 (345)
T cd06450 37 TEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLD 116 (345)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHHHHHh
Confidence 344445555666665322 3357999999999999999987642111 00 12234466667777776543333222
Q ss_pred CccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhh--CCCcEEEEEEccccCCCCCccCChhHH
Q 013204 150 LPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE--GPETIAAFIAEPVIGAGGVIPPPATYF 227 (447)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~a~vi~epv~~~~G~~~~~~~~l 227 (447)
... ..++....+ ..++++|++.+... ...++.+|++...++..|.+.+ +
T Consensus 117 ~~~------------~~v~~~~~~-------------~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~----~ 167 (345)
T cd06450 117 VKV------------RLVPVDEDG-------------RMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDP----L 167 (345)
T ss_pred cCe------------EEeeeCCCC-------------CcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCC----H
Confidence 111 112211100 11247777777531 1113445555544555666655 9
Q ss_pred HHHHHHHHhcCCEEEEehhhcCCCccccccccccCCC-CCCeee--ecccCCCcccceeEEEeChhHHHHhhhccCCCCc
Q 013204 228 EKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSI-KPDLVS--FAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGS 304 (447)
Q Consensus 228 ~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~-~~d~v~--~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~ 304 (447)
++|.++|++||+++|+|++|.++............+. ..|.++ ++|.++++ .++|+++.+
T Consensus 168 ~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p-~g~g~~~~~---------------- 230 (345)
T cd06450 168 EEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVP-LGCSAVLVR---------------- 230 (345)
T ss_pred HHHHHHHHHhCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCC-cchHHHHHH----------------
Confidence 9999999999999999999975422111100001111 357554 56977765 466655433
Q ss_pred cCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCC
Q 013204 305 FSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPE 384 (447)
Q Consensus 305 ~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~ 384 (447)
.+++.+++..+....-++..++..++.+++++.|+++....++ ....+.++.+.+.......
T Consensus 231 ----------~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~--~~~~~~iv~f~~~~~~~~~------ 292 (345)
T cd06450 231 ----------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELL--GEPNLSLVCFRLKPSVKLD------ 292 (345)
T ss_pred ----------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe--cCCceeEEEEEECCcchhh------
Confidence 2233333333322112345566677777888777765322221 1123445555554310000
Q ss_pred cchHHHHHHHHHHcCceEEee-----CCEEEEecCCCC-CHHHHHHHHHHHHH
Q 013204 385 WGIGAYFGAQCEKHGMLVRVS-----GDNIMMSPPFIM-SPEEVDELISKYGK 431 (447)
Q Consensus 385 ~~~~~~~~~~l~~~Gi~~~~~-----g~~iR~~~~~~~-t~e~i~~~~~~l~~ 431 (447)
.....+.++|.++|+++.+. +..+|+++...+ |++|++++++.|++
T Consensus 293 -~~~~~i~~~L~~~g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 293 -ELNYDLSDRLNERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred -HHHHHHHHHHHhcCCEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 02345888899986554432 256999998765 99999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.9e-15 Score=140.35 Aligned_cols=326 Identities=17% Similarity=0.218 Sum_probs=206.7
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcce
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 129 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~ 129 (447)
-+|+|++||.+..-. +.+.. -.....++.+.+...+...+.+-+++..||+.|+|+|+..+. .+.++
T Consensus 16 v~~~V~~am~~~~~~--h~s~~---F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~--------~pgdk 82 (383)
T COG0075 16 VPPRVLLAMARPMVG--HRSPD---FVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLV--------EPGDK 82 (383)
T ss_pred CCHHHHHHhcCCCCC--CCCHH---HHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhcc--------CCCCe
Confidence 467787777665432 11111 134456677777777743333567777899999999999764 44688
Q ss_pred EEEEcCCCccchhhhhccc-CCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEE
Q 013204 130 FIARQKSYHGSTLIAASLS-GLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAF 208 (447)
Q Consensus 130 vi~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~v 208 (447)
|+++.++..|..+.-+... |.... .+.++ | ++. .+++++++.+.+. +.+.+|
T Consensus 83 VLv~~nG~FG~R~~~ia~~~g~~v~------------~~~~~--w-----g~~------v~p~~v~~~L~~~--~~~~~V 135 (383)
T COG0075 83 VLVVVNGKFGERFAEIAERYGAEVV------------VLEVE--W-----GEA------VDPEEVEEALDKD--PDIKAV 135 (383)
T ss_pred EEEEeCChHHHHHHHHHHHhCCceE------------EEeCC--C-----CCC------CCHHHHHHHHhcC--CCccEE
Confidence 9998888888754444322 11110 01110 0 000 0138888888742 345556
Q ss_pred EEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCcccceeEEE
Q 013204 209 IAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSAYMPIGAIL 286 (447)
Q Consensus 209 i~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg~~~~g~~~ 286 (447)
.+-.+-.++|.+.| +++|+++|++||+++|+|-|-+ +|- ..+-.+.||+ |+++ -.|+++++ .++|++.
T Consensus 136 ~~vH~ETSTGvlnp----l~~I~~~~k~~g~l~iVDaVsS-~Gg--~~~~vd~wgi--Dv~itgSQK~l~~P-PGla~v~ 205 (383)
T COG0075 136 AVVHNETSTGVLNP----LKEIAKAAKEHGALLIVDAVSS-LGG--EPLKVDEWGI--DVAITGSQKALGAP-PGLAFVA 205 (383)
T ss_pred EEEeccCcccccCc----HHHHHHHHHHcCCEEEEEeccc-CCC--cccchhhcCc--cEEEecCchhccCC-CccceeE
Confidence 66666666777877 9999999999999999999876 543 2444555565 6654 45999998 7899999
Q ss_pred eChhHHHHhhhccCCCC--------ccC---cCCCCCCcHHHHHHHHHHHHHHhhhc---HHHHHHHHHHHHHHhHhhcc
Q 013204 287 VSPEVSEVIHSQSNTLG--------SFS---HGFTYSGHPVSCAVAIEALKIYKERN---IVEQVNKIAPKFQDGVKAFS 352 (447)
Q Consensus 287 ~~~~~~~~~~~~~~~~~--------~~~---~~~t~~~~~~~~~aa~a~l~~~~~~~---~~~~~~~~~~~l~~~L~~l~ 352 (447)
.+++..+.+.......- .+. ..+.++++.-.+.+..++|+.+.+++ ..++-+.+.+.+++.++++
T Consensus 206 ~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~al- 284 (383)
T COG0075 206 VSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEAL- 284 (383)
T ss_pred ECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-
Confidence 99999888876432200 001 22344444445566668888887765 4566677778888888877
Q ss_pred CCCceeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEee-----CCEEEEecCCCCCHHHHHHH
Q 013204 353 DSPIIGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVS-----GDNIMMSPPFIMSPEEVDEL 425 (447)
Q Consensus 353 ~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-----g~~iR~~~~~~~t~e~i~~~ 425 (447)
+.....+. ...-.+..+..+.... ...+...++ +.|+.+.++ |..+||...-..+.+++..+
T Consensus 285 Gl~~~~~~~~~s~tvta~~~P~g~~-----------~~~~~~~~~~~~g~~i~gg~~~l~gkifRIGhMG~~~~~dv~~~ 353 (383)
T COG0075 285 GLELFADPERRSPTVTAIKVPEGVD-----------DKKVRRALLKEYGVEIAGGQGPLKGKIFRIGHMGNVRPEDVLAA 353 (383)
T ss_pred CCccccCcccCCCceEEEECCCCCC-----------cHHHHHHHHHhCCEEecccccccCccEEEEecCccCCHHHHHHH
Confidence 32222211 2222344444443321 112333455 458877755 36799999999999999999
Q ss_pred HHHHHHHHHHHH
Q 013204 426 ISKYGKALKATE 437 (447)
Q Consensus 426 ~~~l~~~l~~~~ 437 (447)
+.+|+.+|.++.
T Consensus 354 l~ale~~L~~~g 365 (383)
T COG0075 354 LAALEAALRELG 365 (383)
T ss_pred HHHHHHHHHHcC
Confidence 999999998763
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-15 Score=149.26 Aligned_cols=250 Identities=15% Similarity=0.098 Sum_probs=154.3
Q ss_pred CChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccc
Q 013204 75 TTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPAL 153 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 153 (447)
..+....+++.+.+.+. ...+++|++++|+++++..++..+. . ..++.|++.+|+|..+.......++...
T Consensus 109 ~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~------~-~pGd~Vli~~P~Y~~y~~~~~~~g~~~v- 180 (407)
T PLN02368 109 LPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVI------R-GEKDGVLVPVPQYPLYSATISLLGGTLV- 180 (407)
T ss_pred CHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHc------C-CCCCEEEEeCCCCccHHHHHHHcCCEEE-
Confidence 34455555555544422 2467799999999999999988653 1 2357899999999988655544333221
Q ss_pred cCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCC---CcEEEEEEccccCCCCCccCChhHHHHH
Q 013204 154 HQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGP---ETIAAFIAEPVIGAGGVIPPPATYFEKV 230 (447)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~---~~~a~vi~epv~~~~G~~~~~~~~l~~l 230 (447)
.+++... +.+ ..+++++++.+..... +..++++++|.|++| .+.+.+.+++|
T Consensus 181 ------------~v~~~~~----------~~~-~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG--~v~s~e~l~~l 235 (407)
T PLN02368 181 ------------PYYLEES----------ENW-GLDVNNLRQSVAQARSKGITVRAMVIINPGNPTG--QCLSEANLREI 235 (407)
T ss_pred ------------EEecccc----------cCC-CCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCC--ccCCHHHHHHH
Confidence 1111000 000 0113777777653211 233467777866665 56689999999
Q ss_pred HHHHHhcCCEEEEehhhcCCCcccc-cc-c-cccC-CC------CCCee---eecccC-CCcccceeEEEe---ChhHHH
Q 013204 231 QAVVKKYDILFIADEVICAFGRLGT-MF-G-CDKY-SI------KPDLV---SFAKAL-SSAYMPIGAILV---SPEVSE 293 (447)
Q Consensus 231 ~~l~~~~g~~li~DEv~~g~g~~g~-~~-~-~~~~-~~------~~d~v---~~sK~l-~gg~~~~g~~~~---~~~~~~ 293 (447)
.++|++||+++|.||+|..+...+. .+ . .+.. ++ .+.++ +|||.+ +..++|+|++++ ++++++
T Consensus 236 ~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~ 315 (407)
T PLN02368 236 LKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVE 315 (407)
T ss_pred HHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHH
Confidence 9999999999999999998754442 22 1 1110 11 12333 579998 434499999984 788888
Q ss_pred HhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHH-----------Hhh-hcHHHHHHHHHHHHHHhHhhccCCCceeeEe
Q 013204 294 VIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKI-----------YKE-RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIR 361 (447)
Q Consensus 294 ~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~-----------~~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~ 361 (447)
.+... ...+++.+.+++.++.++++. .++ .++.+.++++.+.+.+.|+++ +.+....
T Consensus 316 ~~~~~--------~~~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~---~g~~~~~ 384 (407)
T PLN02368 316 EIYKV--------ASIALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSC---KNVVCNF 384 (407)
T ss_pred HHHHH--------hcccCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCeEeCC
Confidence 87631 112456677888888887752 111 224456666667777777665 3444556
Q ss_pred eeeeEEE
Q 013204 362 GTGLILG 368 (447)
Q Consensus 362 ~~g~~~~ 368 (447)
.+|.|+.
T Consensus 385 P~Gafy~ 391 (407)
T PLN02368 385 TEGAMYS 391 (407)
T ss_pred CCeeeEe
Confidence 6776654
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.3e-15 Score=146.65 Aligned_cols=345 Identities=14% Similarity=0.087 Sum_probs=190.9
Q ss_pred CCCHHHHHHHHHHHhcCCcccc-----cCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcC
Q 013204 49 GSEPRLVAAATAQLNTLPFYHS-----FWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALG 123 (447)
Q Consensus 49 ~~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~ 123 (447)
|.+|.+.+++.+...-. .++. ...+..+...++.+.+++++. .+ ...++.++|+.+...++.+++.+....|
T Consensus 81 ~~~p~i~~~~~~~~~~~-~~tpYq~e~~sqG~lel~~~~~~~la~l~G-~~-~~~l~~~~GA~a~~~~l~~~r~~~~~~G 157 (481)
T PRK04366 81 KYNPKINEKVARLPGFA-ELHPLQPEETVQGALELMYELQEWLKEITG-MD-AVTLQPAAGAHGELTGLLMIRAYHEARG 157 (481)
T ss_pred CCCHHHHHHHHhCcchh-cCCCCCChhhhhHHHHHHHHHHHHHHHHhC-CC-ceEEEeCcHHHHHHHHHHHHHHHhhccC
Confidence 46788888887752211 1111 122334555677778887763 22 2344446777777665554443322333
Q ss_pred CCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCC
Q 013204 124 RPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPE 203 (447)
Q Consensus 124 ~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~ 203 (447)
+.++++|++.++.|+.+. ......|.. +..+++...+. .++++|++.+. +
T Consensus 158 d~~~~~Vlv~~~~hp~~~-~~~~~~G~~------------vv~v~~~~~~~-------------~D~e~L~~~i~---~- 207 (481)
T PRK04366 158 DTKRTEVIVPDSAHGTNP-ASAAMAGFK------------VVEIPSNEDGL-------------VDLEALKAAVG---E- 207 (481)
T ss_pred cCCCCEEEEcCCccHhHH-HHHHHcCCE------------EEEeecCCCCC-------------cCHHHHHhhcc---c-
Confidence 324567888777554443 333222221 11222211111 11366766664 2
Q ss_pred cEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec--ccCC----C
Q 013204 204 TIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALS----S 277 (447)
Q Consensus 204 ~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l~----g 277 (447)
++++|++...++ .|.+ ...+++|.++|+++|+++++|+++. .+..|.. .... ...|+++++ |.|+ .
T Consensus 208 ~t~~V~v~~Pn~-tG~~---~~dl~eI~~~a~~~gal~iVD~a~~-~~~~g~~-~~~~--~GaD~~~~~~hK~l~~P~g~ 279 (481)
T PRK04366 208 DTAALMLTNPNT-LGLF---ERNILEIAEIVHEAGGLLYYDGANL-NAILGKA-RPGD--MGFDVVHLNLHKTFSTPHGG 279 (481)
T ss_pred CCeEEEEeCCCC-cccc---chHHHHHHHHHHHcCCEEEEEecCh-hhhcccC-Cccc--cCCCEEEEechhhcCCCCCC
Confidence 445555554444 4543 1239999999999999999999985 3223311 1122 236888763 8765 2
Q ss_pred cccceeEEEeChhHHHHhhhc-----cCC-------CCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHH---HHHHHHHH
Q 013204 278 AYMPIGAILVSPEVSEVIHSQ-----SNT-------LGSFSHGFTYSGHPVSCAVAIEALKIYKERNIV---EQVNKIAP 342 (447)
Q Consensus 278 g~~~~g~~~~~~~~~~~~~~~-----~~~-------~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~---~~~~~~~~ 342 (447)
|+..+|++.+++++.+.+... ... .......-.++++.+.+.+++..+..+..+++. ++...+.+
T Consensus 280 Ggp~~G~l~~~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~ 359 (481)
T PRK04366 280 GGPGSGPVGVKEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNAN 359 (481)
T ss_pred CCCCeeeeeehhhhHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336778888888877766311 000 000001112233445556666666666555443 44566788
Q ss_pred HHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEe------eCCEEEEecCCC
Q 013204 343 KFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV------SGDNIMMSPPFI 416 (447)
Q Consensus 343 ~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~------~g~~iR~~~~~~ 416 (447)
++++.|.++ ..+....... ..+.+.+..-.... .....+.++|.++|+.... ..+.+|+++...
T Consensus 360 ~l~~~L~~~--~~~~~~~~~~-~~~~~~~~~~~~~g-------~~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l~is~~e~ 429 (481)
T PRK04366 360 YLKARLKDI--YDLPYDRPCM-HEFVLSGKKLKETG-------VRTLDIAKRLLDYGFHPPTIYFPLIVPEALMIEPTET 429 (481)
T ss_pred HHHHHhHhh--CcccCCCCee-EEEEEECccccccC-------CCHHHHHHHHHHCCccCCccccccccCCeEEEcccCC
Confidence 889888875 1211110000 01112211000000 0145688999999998651 135799999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013204 417 MSPEEVDELISKYGKALKATEERVKELK 444 (447)
Q Consensus 417 ~t~e~i~~~~~~l~~~l~~~~~~~~~~~ 444 (447)
+|++|||++++.|+++.+++.++.+.+|
T Consensus 430 ~t~edid~l~~~l~~i~~~~~~~~~~~~ 457 (481)
T PRK04366 430 ESKETLDAFIAAMKQIAEEAKENPELVK 457 (481)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCcHhHh
Confidence 9999999999999999998887655544
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.7e-15 Score=129.87 Aligned_cols=311 Identities=16% Similarity=0.158 Sum_probs=178.4
Q ss_pred cCCChHHHHHHHHHHHhcCcC-CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCc
Q 013204 73 NRTTKPSLDLAKELLEMFTAS-KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLP 151 (447)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~-~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~ 151 (447)
.+.......+++.+.+.+.++ ....+.+|++.-.|.--+..+. .-.+..| +.+..++-+.|.|-|+....+.-.-..
T Consensus 74 QG~~~li~ala~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF-~G~~sdG-~~k~illPLaPeYiGY~d~~l~~d~fV 151 (417)
T COG3977 74 QGKAVLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLF-AGRRSDG-TEKKILLPLAPEYIGYADAGLEEDLFV 151 (417)
T ss_pred cchhHHHHHHHHHHHHHhCCCCccceeeecCCccchHHHHHHHh-cCccCCC-cceeEeeccChhhccccccccCcccee
Confidence 345566677888888887653 4457777775544443333332 1111112 123455557889988865544433233
Q ss_pred cccCCCCCCC--CcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHH
Q 013204 152 ALHQKFDLPA--PFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEK 229 (447)
Q Consensus 152 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~ 229 (447)
.+++.+.... .+-+++|+ +.|+- .+.+.+|++.-..+.+|. +.+++++.+
T Consensus 152 s~kP~iel~~~g~FKY~vDF---------------------~~l~i------~e~~g~ic~SRPtNPTGN-VlTdeE~~k 203 (417)
T COG3977 152 SAKPNIELLPAGQFKYHVDF---------------------EHLHI------GESTGAICVSRPTNPTGN-VLTDEELAK 203 (417)
T ss_pred eccCCcccccccceeeccCH---------------------HHccc------ccccceEEecCCCCCCCC-cccHHHHHH
Confidence 3443332221 11122221 32221 256778888766555554 568899999
Q ss_pred HHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee-e--ecc-cCCCcccceeEEEeChhHHHHhhhccCCCCcc
Q 013204 230 VQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV-S--FAK-ALSSAYMPIGAILVSPEVSEVIHSQSNTLGSF 305 (447)
Q Consensus 230 l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v-~--~sK-~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~ 305 (447)
|..++++||++||+|.+|. .-..+-.|.-...-..++++ | +|| ++.| .++|.+++++++++.+..-
T Consensus 204 ldalA~~~giPliIDnAYg-~PFP~iifsd~~~~w~~NiilC~SLSK~GLPG--~R~GIiIane~viqaitnm------- 273 (417)
T COG3977 204 LDALARQHGIPLIIDNAYG-VPFPGIIFSDATPLWNENIILCMSLSKLGLPG--SRCGIIIANEKVIQAITNM------- 273 (417)
T ss_pred HHHHhhhcCCcEEEecccC-CCCCceecccccccCCCCEEEEeehhhcCCCC--cceeEEEccHHHHHHHHhc-------
Confidence 9999999999999999874 32332222111111235554 4 467 6666 7999999999999988632
Q ss_pred CcCCCCCCcHHHHHHHHHHHH-----HHhhhcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeE-EEEEeecCCCCC
Q 013204 306 SHGFTYSGHPVSCAVAIEALK-----IYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLI-LGTEFADNKSPN 378 (447)
Q Consensus 306 ~~~~t~~~~~~~~~aa~a~l~-----~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~-~~i~~~~~~~~~ 378 (447)
....+..+..++.+.+...++ .+.++-++..++.+.+...+.|+.. +..+.. --+++|.+ +++.|.+-+-+
T Consensus 274 n~iisLap~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~~~~~-iHkpEGAIFlWLWf~dLPIt- 351 (417)
T COG3977 274 NGIISLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPEYRCL-IHKPEGAIFLWLWFKDLPIT- 351 (417)
T ss_pred cceeeecCCCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCcccee-eecCCcceeehhhhccCCCC-
Confidence 111222333333333333332 1111112233344444444444332 333322 22456654 44555543322
Q ss_pred CCCCCCcchHHHHHHHHHHcCceEEeeC--------------CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 379 EPFPPEWGIGAYFGAQCEKHGMLVRVSG--------------DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 379 ~~~~~~~~~~~~~~~~l~~~Gi~~~~~g--------------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.+.++++|+++|+++.|+. ..+|++ +.-++++|+..+.+|.+.+++.
T Consensus 352 ---------t~~LYq~LKa~Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn--~~~~~~~ie~Gva~lae~ve~~ 412 (417)
T COG3977 352 ---------TEELYQRLKARGVLMVPGHYFFPGLDKEWPHTHQCMRMN--YVPEPEKIEKGVAILAEEVERA 412 (417)
T ss_pred ---------HHHHHHHHHhCeEEEecccccCCCCCCCCCCccceEEEe--cCCCHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999762 569999 8999999999999998887654
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-15 Score=142.87 Aligned_cols=349 Identities=17% Similarity=0.180 Sum_probs=190.7
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCCc-cccc-CcCCChH-HHHHHHHHHHhcCcCCCCeEEEeCChhhHHH
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPF-YHSF-WNRTTKP-SLDLAKELLEMFTASKMAKVFFTNSGSEAND 109 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~-~~~~~~~-~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~ 109 (447)
-.|+|..+. |..+|.|.+|+.+....+.. .++. .+.-.+. ..+-.+.++++. +.+..+|+||+++||+|.
T Consensus 44 ~vyld~~at------~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklI-nAd~~dIiFts~ATEs~N 116 (428)
T KOG1549|consen 44 PVYLDNQAT------GPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLI-NADPSDIVFTSGATESNN 116 (428)
T ss_pred cEEEecCcC------CCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHh-CCCCCcEEEeCCchHHHH
Confidence 478887544 56899999999998876432 2222 1122233 333445555555 445556999999999999
Q ss_pred HHHHH-HHHHHHhcCCCCcceEEEEcCCCccchhh---hhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHH
Q 013204 110 TQVKL-VWYYNNALGRPNKKKFIARQKSYHGSTLI---AASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEY 185 (447)
Q Consensus 110 ~Al~~-~~~~~~~~~~~~~~~vi~~~~~yhg~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (447)
.+++. .|.++ +..++.||.+. .-|.+... ++...| ..+..+|+++.
T Consensus 117 lvl~~v~~~~~----~~~~k~iitl~-~eH~~v~~s~~~l~~~g------------~~Vt~lpv~~~------------- 166 (428)
T KOG1549|consen 117 LVLKGVARFFG----DKTKKHIITLQ-TEHPCVLDSCRALQEEG------------LEVTYLPVEDS------------- 166 (428)
T ss_pred HHHHHhhcccc----ccccceEEEec-ccCcchhHHHHHHHhcC------------eEEEEeccCcc-------------
Confidence 99994 44442 11123555554 44554322 222222 12233444321
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCC
Q 013204 186 STRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIK 265 (447)
Q Consensus 186 ~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~ 265 (447)
...+++.+++.+. .++.+|.+..++++.|...| +++|.++|+++++.+++|.+|. .|.. -.+.-.+.
T Consensus 167 ~~~d~~~~~~~i~----~~T~lv~I~~Vnn~~gv~~P----v~EI~~icr~~~v~v~~DaAQa-vG~i----~vDV~eln 233 (428)
T KOG1549|consen 167 GLVDISKLREAIR----SKTRLVSIMHVNNEIGVLQP----VKEIVKICREEGVQVHVDAAQA-VGKI----PVDVQELN 233 (428)
T ss_pred ccccHHHHHHhcC----CCceEEEEEecccCcccccc----HHHHHHHhCcCCcEEEeehhhh-cCCc----cccHHHcC
Confidence 1122466666665 47889999999999999999 9999999999999999999997 5543 23444567
Q ss_pred CCeeeec--ccCCCcccceeEEEeChh---HH-HHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh--cHHHHH
Q 013204 266 PDLVSFA--KALSSAYMPIGAILVSPE---VS-EVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER--NIVEQV 337 (447)
Q Consensus 266 ~d~v~~s--K~l~gg~~~~g~~~~~~~---~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~--~~~~~~ 337 (447)
+|+++++ |.++- .++|++++++. +. ......+.+.+.+..++.-.+..++.- ++.++.... .....+
T Consensus 234 ~D~~s~s~HK~ygp--~~iGaLYvr~~~~~~~~~p~~~GGgq~r~~rsGT~~~~~~~~~g---sA~e~~~~~~~~~~~~~ 308 (428)
T KOG1549|consen 234 ADFLSISAHKIYGP--PGIGALYVRRKRPRLRVEPPLSGGGQERGLRSGTVATPLAVGLG---SAAEFVNKEMAYDEAII 308 (428)
T ss_pred chheeeecccccCC--CcceEEEEccCCCcccccCcccCCccccccccCCcCchhhhhhH---HHHHHHHhhcchhHHHH
Confidence 8999887 76664 45999999872 11 111111112222232222233333333 334443321 122333
Q ss_pred HHHHHHHHHhHh-hccCCCceee-EeeeeeEEEEEee------------cCCCCCCCCCCCcchHHHHHHHHHHcCceEE
Q 013204 338 NKIAPKFQDGVK-AFSDSPIIGE-IRGTGLILGTEFA------------DNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR 403 (447)
Q Consensus 338 ~~~~~~l~~~L~-~l~~~~~~~~-~~~~g~~~~i~~~------------~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~ 403 (447)
.+....+...+. .+....+.+. ..-...+..+.+. .-..+..+.+.... ..-...++..|.-..
T Consensus 309 ~~~~~~ll~~i~~~~~~~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~s~~a~~~~~--~epsy~l~~~G~~~~ 386 (428)
T KOG1549|consen 309 KRLSEKLLMGIGQSLPEVTLNGSGKSRYPGLVSLSFPYVEGESLLMDLKDVALSSGSACTSAS--LEPSYVLRAIGVDED 386 (428)
T ss_pred HHHHHHHHHHHhhhCchhhccCCcccccccceeeecccccCcchhhhhhhhhhcccchhhcCC--CCcchhhhhcCcchh
Confidence 333344443332 1211000000 0001111122222 11111111110000 011233555666444
Q ss_pred eeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 404 VSGDNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 404 ~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
.....|||+.-..++++|++++++.+.+.++.++.
T Consensus 387 ~~~~~iRis~G~y~t~~di~~~~~~i~~~v~~~~~ 421 (428)
T KOG1549|consen 387 LAHSSIRISIGRYTTEEDIDYLVDAIKKLVSLLRE 421 (428)
T ss_pred hhcceeEEeeeeeCcHHHHHHHHHHHHHHHHhccc
Confidence 44577999999999999999999999988876543
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.6e-15 Score=146.67 Aligned_cols=346 Identities=14% Similarity=0.088 Sum_probs=191.7
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCC-ccc--ccCcCCChHHHHH----HHHHHHhcCcCCCCeEEEe---C
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP-FYH--SFWNRTTKPSLDL----AKELLEMFTASKMAKVFFT---N 102 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~--~~~~~~~~~~~~l----~~~l~~~~~~~~~~~v~~~---~ 102 (447)
++.|.+..+-. .-.|.+++++...+.+.. .++ +....-.+...++ .+++++++. .+.+++.++ +
T Consensus 34 ~~~l~l~~sen-----~~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~-a~~~~~~~~~~~~ 107 (452)
T PTZ00094 34 IEGLELIASEN-----FTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFG-LDPEEWGVNVQPY 107 (452)
T ss_pred HcCeeEecccc-----cCCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhC-CCcccceeecCCC
Confidence 35667655531 256999999988875422 111 1111111222233 246666663 455566666 7
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCCh
Q 013204 103 SGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETE 182 (447)
Q Consensus 103 sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (447)
||++||..++..+. ..+++|++ +..-||........-. ..........+...+++. .
T Consensus 108 sgt~an~~v~~al~--------~~gd~Ii~-~~~ehg~~l~~~~~l~----~~~~~~~~~~~~~~~~~~--------~-- 164 (452)
T PTZ00094 108 SGSPANFAVYTALL--------QPHDRIMG-LDLPSGGHLTHGFYTA----KKKVSATSIYFESLPYQV--------N-- 164 (452)
T ss_pred chHHHHHHHHHHhc--------CCCCEEEe-cccccCCccccccccc----ccccccceeeeeeeeccc--------C--
Confidence 99999999998763 22356666 3444554322110000 000000000000011100 0
Q ss_pred hHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccC
Q 013204 183 EEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKY 262 (447)
Q Consensus 183 ~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~ 262 (447)
..+..+.++|++++....+ ..|++. .+..|...+ +++|.++|+++|+++++|++|+ +|..+........
T Consensus 165 -~~g~id~~~L~~~l~~~~~---~lvi~~--~s~~g~~~d----i~~I~~i~~~~ga~l~vDaaq~-~G~i~~~~~~~~~ 233 (452)
T PTZ00094 165 -EKGLIDYDKLEELAKAFRP---KLIIAG--ASAYPRDID----YKRFREICDSVGAYLMADIAHT-SGLVAAGVLPSPF 233 (452)
T ss_pred -CCCCcCHHHHHHHHHHhCC---CEEEEe--CCCCCCccC----HHHHHHHHHHcCCEEEEeccch-hccccCCCCCCCC
Confidence 0022335888888864322 234442 334566666 9999999999999999999997 6665422111011
Q ss_pred CCCCCeeeec--ccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh---hcHHHHH
Q 013204 263 SIKPDLVSFA--KALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE---RNIVEQV 337 (447)
Q Consensus 263 ~~~~d~v~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~ 337 (447)
...|++++| |+|.|+ . .|+++.++++.+.+...... ........+.++..+++..++++.+.. ++..+++
T Consensus 234 -~~~D~l~~S~hK~l~GP-~-Gg~l~~~~~~~~~l~~~~~~--~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i 308 (452)
T PTZ00094 234 -PYADVVTTTTHKSLRGP-R-SGLIFYRKKVKPDIENKINE--AVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQV 308 (452)
T ss_pred -CCCcEEEcCCccCCCCC-C-ceEEEEecccchHHHHhhcc--ccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 147888765 999885 3 37777777654433221000 011111124456677777788887743 3466788
Q ss_pred HHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee----------CC
Q 013204 338 NKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS----------GD 407 (447)
Q Consensus 338 ~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----------g~ 407 (447)
.++.+++++.|++. +..+..... ......+.+..... ....+...|.++||++... .+
T Consensus 309 ~~l~~~l~~~L~~~-g~~v~~~~~-~~~~~~v~~~~~~~----------~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~ 376 (452)
T PTZ00094 309 LKNAKALAAALEKR-GYDLVTGGT-DNHLVLVDLRPFGI----------TGSKMEKLLDAVNISVNKNTIPGDKSALNPS 376 (452)
T ss_pred HHHHHHHHHHHHhC-CcEEecCCC-CCceEeecCCcCCC----------CHHHHHHHHHHCCcEEecccCCCCCcCCCCC
Confidence 88888888888764 322221100 01122333332211 1345667777789999622 25
Q ss_pred EEEEecCCCCC----HHHHHHHHHHHHHHHHH
Q 013204 408 NIMMSPPFIMS----PEEVDELISKYGKALKA 435 (447)
Q Consensus 408 ~iR~~~~~~~t----~e~i~~~~~~l~~~l~~ 435 (447)
.+|++++..++ ++||+++++.|.+.+..
T Consensus 377 ~vRis~~~~tt~g~~~~di~~l~~~l~~~~~~ 408 (452)
T PTZ00094 377 GVRLGTPALTTRGAKEKDFKFVADFLDRAVKL 408 (452)
T ss_pred eEEECCHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 79999976665 99999999999998874
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-14 Score=140.34 Aligned_cols=215 Identities=13% Similarity=0.108 Sum_probs=137.9
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccC-C-CCCC
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKY-S-IKPD 267 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~-~-~~~d 267 (447)
.+++++++.. .+. .|++....+.++ ..+ +++|+++|++||+++++|++|+ +|..|.......+ . ...|
T Consensus 209 ~d~l~~~~~~---~~p-lvii~g~S~~~~-~~d----l~~i~eia~~~gA~L~VD~AH~-~Gligg~~~~~~~~~~~~~D 278 (493)
T PRK13580 209 YDEIAALARE---FKP-LILVAGYSAYPR-RVN----FAKLREIADEVGAVLMVDMAHF-AGLVAGKVFTGDEDPVPHAD 278 (493)
T ss_pred HHHHHHHHhh---cCC-EEEEeCccccCC-CcC----HHHHHHHHHHcCCEEEEECchh-hceeccccchhhcCCCCCCc
Confidence 4778887764 223 444444433343 555 9999999999999999999997 6665522111111 1 1467
Q ss_pred eee--ecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh---cHHHHHHHHHH
Q 013204 268 LVS--FAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER---NIVEQVNKIAP 342 (447)
Q Consensus 268 ~v~--~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~---~~~~~~~~~~~ 342 (447)
+++ ++|+|.|+ ..|++++++++.+.+... .++.. +....| .++++..+++.+.++ +..+++.++.+
T Consensus 279 ~vtgT~hKaL~GP--~GG~I~~~~~l~~~L~~a----~P~i~--gg~l~p-~iAA~avAl~e~~~~ef~~y~~~l~~Na~ 349 (493)
T PRK13580 279 IVTTTTHKTLRGP--RGGLVLAKKEYADAVDKG----CPLVL--GGPLPH-VMAAKAVALAEARTPEFQKYAQQVVDNAR 349 (493)
T ss_pred EEEeCChhhccCC--CeEEEEecHHHHHHHhhC----CCccc--CCCccH-HHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 775 57999774 458889999988888421 12222 222233 333333345555433 36788999999
Q ss_pred HHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-----------CCEEEE
Q 013204 343 KFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-----------GDNIMM 411 (447)
Q Consensus 343 ~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----------g~~iR~ 411 (447)
+|++.|++. ++.++.. .....++.+++.+... ....+.+.|.+.||++... ..+|||
T Consensus 350 ~La~~L~~~-G~~vv~g-gTdshIV~V~lg~~~~----------~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRI 417 (493)
T PRK13580 350 ALAEGFLKR-GARLVTG-GTDNHLVLIDVTSFGL----------TGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRL 417 (493)
T ss_pred HHHHHHHhc-CCCccCC-CCCCCEEEEEeCCHHH----------HHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEe
Confidence 999999876 3333211 1234556666654321 1234667899999998731 256999
Q ss_pred ecCC----CCCHHHHHHHHHHHHHHHHH
Q 013204 412 SPPF----IMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 412 ~~~~----~~t~e~i~~~~~~l~~~l~~ 435 (447)
+++. .++++||+++++.|.++++.
T Consensus 418 g~~A~ttrg~teedi~~iad~l~~~l~~ 445 (493)
T PRK13580 418 GTPALTTLGMGSDEMDEVAELIVKVLSN 445 (493)
T ss_pred ccchhhhcCCCHHHHHHHHHHHHHHHHh
Confidence 9987 56799999999999888764
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.2e-16 Score=148.99 Aligned_cols=234 Identities=16% Similarity=0.142 Sum_probs=152.2
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhh---cccCCc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAA---SLSGLP 151 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~---~~~~~~ 151 (447)
..+...++++++++++ +.+.+++++||++|+..+++.+. .++++|++..+.|++...... ...|.
T Consensus 38 ~~p~~~~le~~la~l~---g~~~a~~~~sG~~Ai~~~l~~l~--------~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~- 105 (369)
T cd00614 38 GNPTVDALEKKLAALE---GGEAALAFSSGMAAISTVLLALL--------KAGDHVVASDDLYGGTYRLFERLLPKLGI- 105 (369)
T ss_pred CChhHHHHHHHHHHHH---CCCCEEEEcCHHHHHHHHHHHHc--------CCCCEEEECCCCcchHHHHHHHHHhhcCe-
Confidence 5677889999999986 34578889999999999998764 335678888888877642211 11111
Q ss_pred cccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHH
Q 013204 152 ALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 231 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~ 231 (447)
.+..++..+ ++++++.+. +++++|++|.++++.|.+.+ +++|.
T Consensus 106 -----------~~~~v~~~d------------------~~~l~~~i~----~~~~~v~~e~~~np~g~~~d----l~~i~ 148 (369)
T cd00614 106 -----------EVTFVDPDD------------------PEALEAAIK----PETKLVYVESPTNPTLKVVD----IEAIA 148 (369)
T ss_pred -----------EEEEeCCCC------------------HHHHHHhcC----CCCeEEEEECCCCCCCeecC----HHHHH
Confidence 011112110 366666664 35678899998888887776 99999
Q ss_pred HHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCcc-cceeEEEeCh-hHHHHhhhccCCCCccCc
Q 013204 232 AVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSAY-MPIGAILVSP-EVSEVIHSQSNTLGSFSH 307 (447)
Q Consensus 232 ~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg~-~~~g~~~~~~-~~~~~~~~~~~~~~~~~~ 307 (447)
++|++||+++|+|+++... .. .......+|++ +++|.++|++ ...|++++++ ++++.+.... .
T Consensus 149 ~la~~~g~~livD~t~~~~-~~-----~~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~-------~ 215 (369)
T cd00614 149 ELAHEHGALLVVDNTFATP-YL-----QRPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLR-------L 215 (369)
T ss_pred HHHHHcCCEEEEECCCcch-hc-----CChhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHH-------H
Confidence 9999999999999998622 21 11122346877 5679998742 5688899977 7777775321 1
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccC-----CCcee----------eEeeeeeEEEEEee
Q 013204 308 GFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD-----SPIIG----------EIRGTGLILGTEFA 372 (447)
Q Consensus 308 ~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~-----~~~~~----------~~~~~g~~~~i~~~ 372 (447)
......+|+.++.++..++.+ +...++..++.+++.+.|++.+. +|... ...+.|.++.+.+.
T Consensus 216 ~~g~~~~p~~a~~~l~~l~tl--~~r~~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~ 293 (369)
T cd00614 216 ALGTILSPFDAWLLLRGLKTL--PLRMERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELK 293 (369)
T ss_pred hhCCCCCHHHHHHHHcCCCCH--HHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeC
Confidence 123345677776666666532 22456667777788888776532 12110 12356888888875
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-14 Score=141.97 Aligned_cols=351 Identities=16% Similarity=0.177 Sum_probs=190.4
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHH
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEAND 109 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~ 109 (447)
.-|..|+||.+-.++ ..+.+++..++..+...| .......+|++.+++++ +.+.+++++||++|+.
T Consensus 17 ~~~~v~iDlltds~t-------~ams~~~~~a~~~gd~~Y----~~~~g~~~Leeaia~~~---g~~~vv~t~~Gt~Al~ 82 (431)
T cd00617 17 RSEDVYIDLLTDSGT-------GAMSDYQWAAMMLGDEAY----AGSKSFYDLEDAVQDLF---GFKHIIPTHQGRGAEN 82 (431)
T ss_pred CCCCcCCCCCCCCCc-------HHHHHHHHHHHHhCCCcc----CCCCCHHHHHHHHHHHH---CCCeEEEcCCHHHHHH
Confidence 457788999866543 455555566655433222 23445778999999997 5568999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (447)
.++.+.. ++| +.| ...+.|..+.......++.+.... ...... ..... .|+ ...+
T Consensus 83 la~~al~-------~pG-D~V-~~~~~f~~~~~~i~~~Ga~pv~v~-i~~~~~--~~~~~--pf~-----------gniD 137 (431)
T cd00617 83 ILFSILL-------KPG-RTV-PSNMHFDTTRGHIEANGAVPVDLV-IDEAHD--AQELI--PFK-----------GNID 137 (431)
T ss_pred HHHHHhC-------CCC-CEE-ccCCcccchHHHHHhCCCEeEEEe-cccccc--ccccc--CCC-----------CCcC
Confidence 9988652 133 444 455666555433333333332110 000000 00000 000 0112
Q ss_pred HHHHHHHHHhhCCCcEEEEEEcc-ccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCC----------Cccccccc
Q 013204 190 ANNLEDLILKEGPETIAAFIAEP-VIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF----------GRLGTMFG 258 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~ep-v~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~----------g~~g~~~~ 258 (447)
++.|++.+.....+.+++|+++. .|+.+| .+.+.+.+++|.++|++||++||.|+++.-. |..+....
T Consensus 138 ~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG-~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ 216 (431)
T cd00617 138 VAKLEKLIDEVGAENIPYIVLTITNNTAGG-QPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIA 216 (431)
T ss_pred HHHHHHHhCcccCCCccEEEEECCcCCCCC-ccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHH
Confidence 58888888644334466666654 455556 5678899999999999999999999996511 11111110
Q ss_pred ---cccCCCCCCeeeec--ccCCCcccce-eEEEeCh-hHHHHhhhccCCCCccCcCCCCCC-cHHHHHHHHHHHHHHhh
Q 013204 259 ---CDKYSIKPDLVSFA--KALSSAYMPI-GAILVSP-EVSEVIHSQSNTLGSFSHGFTYSG-HPVSCAVAIEALKIYKE 330 (447)
Q Consensus 259 ---~~~~~~~~d~v~~s--K~l~gg~~~~-g~~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~-~~~~~~aa~a~l~~~~~ 330 (447)
.+.+ --.|..++| |..+ .++ |++++++ ++++.++........+ .++++ +..-+++...+|+....
T Consensus 217 ei~~e~~-s~sd~~~mS~~K~~~---~~~GG~i~~~d~~l~~~~~~~~~~~~~~---~~~gG~~~r~~~A~A~gL~e~~~ 289 (431)
T cd00617 217 EIAREMF-SYADGCTMSAKKDGL---VNIGGFLALRDDELYEEARQRVVLYEGF---VTYGGMAGRDMEALAQGLREAVE 289 (431)
T ss_pred HHHHHhh-ccCCEEEEEeecCCC---CccceEEEeCcHHHHHHHHHhccccCCc---cccccccHHHHHHHHHHHHhccc
Confidence 0000 013444444 3322 233 4678876 5888876321001111 12222 22223322225543212
Q ss_pred hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCC--CCCCCCCCcchHHHHH-HHHHHcCceEEee--
Q 013204 331 RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKS--PNEPFPPEWGIGAYFG-AQCEKHGMLVRVS-- 405 (447)
Q Consensus 331 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~--~~~~~~~~~~~~~~~~-~~l~~~Gi~~~~~-- 405 (447)
.+..+...++.+++.+.|++. +.+++. +.-|.++.++...-.. +...+ -+..+. ..+.+.||.+...
T Consensus 290 ~~~l~~~~~~r~~l~~~L~~~-G~~v~~--P~Ggh~v~~d~~~~~~~~~~~~~-----~~~~la~~L~~e~gV~~~~~g~ 361 (431)
T cd00617 290 EDYLRHRVEQVRYLGDRLDEA-GVPIVE--PAGGHAVFIDAREFLPHIPQEQF-----PAQALAAELYLEAGVRAVELGI 361 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCCccC--CCcceEEEEEhHHhcCCCCcccC-----cHHHHHHHHHHHcCeeEEeecc
Confidence 233343344457777778776 334332 2233455555543111 00111 134455 4455667876531
Q ss_pred ---------C-------CEEEEecCC-CCCHHHHHHHHHHHHHHHHH
Q 013204 406 ---------G-------DNIMMSPPF-IMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 406 ---------g-------~~iR~~~~~-~~t~e~i~~~~~~l~~~l~~ 435 (447)
+ +.+|+..|- ..|.++++.+.+.|...++.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~ 408 (431)
T cd00617 362 FSAGRDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYER 408 (431)
T ss_pred eecccCCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHhh
Confidence 1 469999885 67999999999999988876
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.1e-15 Score=144.20 Aligned_cols=320 Identities=13% Similarity=0.054 Sum_probs=185.8
Q ss_pred CCHH-HHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeC-ChhhHHHHHHHHHHHHHHhcCCCCc
Q 013204 50 SEPR-LVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTN-SGSEANDTQVKLVWYYNNALGRPNK 127 (447)
Q Consensus 50 ~~p~-v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~-sGseA~~~Al~~~~~~~~~~~~~~~ 127 (447)
-+|+ |++++.+..-.. .|+. ........+..+.+.+++...+..+|+|+. |||++++.++..+. .+
T Consensus 23 ~~~~~v~~a~~~~~~~~--~hr~-~~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l~--------~~- 90 (378)
T PRK03080 23 KRPGWQLEALADALLGR--SHRQ-KPVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLL--------GA- 90 (378)
T ss_pred CChHHHHHHHHhhhccc--CcCC-HHHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhcC--------CC-
Confidence 4677 888887654311 1211 011344556667777776422345788886 99999999998653 21
Q ss_pred ceEEEEcCCCccchhhh-hc-ccCC-ccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCc
Q 013204 128 KKFIARQKSYHGSTLIA-AS-LSGL-PALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPET 204 (447)
Q Consensus 128 ~~vi~~~~~yhg~~~~~-~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~ 204 (447)
+++++...+.||..... +. ..+. . +..++.+.. ...+ +++++ .
T Consensus 91 ~~~~vi~~g~f~~~~~~~~~~~~g~~~------------v~~~~~~~g-------~~~d------~~~i~-------~-- 136 (378)
T PRK03080 91 RRVDHLAWESFGSKWATDVVKQLKLED------------PRVLEADYG-------SLPD------LSAVD-------F-- 136 (378)
T ss_pred CcceEEEeCHHHHHHHHHHHhhcCCCC------------ceEeccCCC-------CCCC------HhhcC-------C--
Confidence 12233334566664332 11 1111 1 011111100 0000 12211 1
Q ss_pred EEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec--ccCCCcccce
Q 013204 205 IAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMPI 282 (447)
Q Consensus 205 ~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l~gg~~~~ 282 (447)
+..|.+..+.+.+|.+.| +++|.+ ++||+++++|-+|+ +|.. ++..+ . .|++++| |.|+++ .++
T Consensus 137 ~~~V~~~h~~t~tG~~~p----i~~I~~--~~~g~~~vVDa~qs-~G~~--pidv~--~--iD~~~~s~~K~l~~P-~G~ 202 (378)
T PRK03080 137 DRDVVFTWNGTTTGVRVP----VARWIG--ADREGLTICDATSA-AFAL--PLDWS--K--LDVYTFSWQKVLGGE-GGH 202 (378)
T ss_pred CCCEEEEecCCccceecc----chhhcc--ccCCCeEEEecccc-cccC--CCCHH--H--CcEEEEehhhhCCCC-Cce
Confidence 224667777777788888 888888 78999999999987 5433 22222 2 4888776 899886 589
Q ss_pred eEEEeChhHHHHhhhccCCC---------------CccCcCCC-CCCcHHHHHHHHHHHHHHhhh-c---HHHHHHHHHH
Q 013204 283 GAILVSPEVSEVIHSQSNTL---------------GSFSHGFT-YSGHPVSCAVAIEALKIYKER-N---IVEQVNKIAP 342 (447)
Q Consensus 283 g~~~~~~~~~~~~~~~~~~~---------------~~~~~~~t-~~~~~~~~~aa~a~l~~~~~~-~---~~~~~~~~~~ 342 (447)
|+++.+++.++.+....... .......| ++++..++.+..++|+.+.+. + ..++.+++.+
T Consensus 203 g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~ 282 (378)
T PRK03080 203 GMAILSPRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANAS 282 (378)
T ss_pred EEEEECHHHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999887765321000 00011123 234445565667788877654 3 3456666777
Q ss_pred HHHHhHhhccCCCcee--eEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-----CCEEEEecCC
Q 013204 343 KFQDGVKAFSDSPIIG--EIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-----GDNIMMSPPF 415 (447)
Q Consensus 343 ~l~~~L~~l~~~~~~~--~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----g~~iR~~~~~ 415 (447)
++++.|+++....... .....+.++.+.+++.. + .....+...++++|+++..+ ++.+|++++.
T Consensus 283 ~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~~-~--------~~~~~~~~~l~~~~i~v~~g~~~~~~~~vRis~~~ 353 (378)
T PRK03080 283 VLYDWAEKTPWATPLVADPATRSNTSVTLDFVDAQ-A--------AVDAAAVAKLLRENGAVDIEPYRDAPNGLRIWCGP 353 (378)
T ss_pred HHHHHHHhCCCcccccCCccccCccEEEEEcCCch-H--------HHHHHHHHHHHHcCCeeccccccCCCCcEEEecCC
Confidence 8888887763222211 11112234555544310 0 01223566677888887643 2579999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 013204 416 IMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 416 ~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
.+|++||++++++|++++++++.
T Consensus 354 ~~t~~di~~l~~al~~~~~~~~~ 376 (378)
T PRK03080 354 TVEPADVEALTPWLDWAFERLKA 376 (378)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998887653
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-14 Score=142.61 Aligned_cols=327 Identities=13% Similarity=0.073 Sum_probs=184.7
Q ss_pred CCHHHHHHHHHHH-hcCCccc---ccCcCCChHHHHHHH----HHHHhcCcCCCCeEEE---eCChhhHHHHHHHHHHHH
Q 013204 50 SEPRLVAAATAQL-NTLPFYH---SFWNRTTKPSLDLAK----ELLEMFTASKMAKVFF---TNSGSEANDTQVKLVWYY 118 (447)
Q Consensus 50 ~~p~v~~a~~~~~-~~~~~~~---~~~~~~~~~~~~l~~----~l~~~~~~~~~~~v~~---~~sGseA~~~Al~~~~~~ 118 (447)
..|.+++++...+ .++..++ ++.++. ....++++ +.++.|. ...+...+ ..||+.||..++..+.
T Consensus 46 ~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~-~~~d~lE~~~~~~~~~~f~-~~~~~~~~nv~~~SG~~AN~av~~aL~-- 121 (475)
T PLN03226 46 TSRAVMEALGSCLTNKYSEGLPGARYYGGN-EYIDQIETLCQKRALEAFR-LDPEKWGVNVQPLSGSPANFAVYTALL-- 121 (475)
T ss_pred CCHHHHHHHhhHHhccccCCCCCCcCcCCC-hhHHHHHHHHHHHHHHHhC-CCcceeEEecCcCchHHHHHHHHHHhC--
Confidence 5689999998888 4433322 233333 24444443 2444442 22223223 3799999999998764
Q ss_pred HHhcCCCCcceEEEEcCC-----CccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHH
Q 013204 119 NNALGRPNKKKFIARQKS-----YHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNL 193 (447)
Q Consensus 119 ~~~~~~~~~~~vi~~~~~-----yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 193 (447)
.++++|+..+-. -|++.......+....+ ...+++.. ... ....++++|
T Consensus 122 ------~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~----------~~~~~y~~----~~~------~g~iD~d~L 175 (475)
T PLN03226 122 ------QPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIY----------FESMPYRL----DES------TGLIDYDKL 175 (475)
T ss_pred ------CCCCEEEECCCCcCcchhhhhhhcccccccceEE----------EEeeeeee----cCC------CCCcCHHHH
Confidence 345778775431 13332211111111100 00001100 000 001125888
Q ss_pred HHHHHhhCCCcEEEEEE-ccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeee--
Q 013204 194 EDLILKEGPETIAAFIA-EPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS-- 270 (447)
Q Consensus 194 e~~l~~~~~~~~a~vi~-epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~-- 270 (447)
++++....+ ..|++ +.++++ ..+ +++|+++|++||++|++|++|. +|..+........+ ..|+++
T Consensus 176 e~~l~~~~p---klIv~~~S~~s~---~~D----~a~i~~ia~~~ga~LlvD~AH~-~Gli~~~~~~~p~~-~~Div~~t 243 (475)
T PLN03226 176 EKKAMLFRP---KLIIAGASAYPR---DWD----YARMRKIADKVGALLMCDMAHI-SGLVAAQEAASPFE-YCDVVTTT 243 (475)
T ss_pred HHHHhhcCC---eEEEEecCcCCC---ccC----HHHHHHHHHHcCCEEEEEchhh-hCcccCCCCCCCCC-CCeEEEec
Confidence 888764332 34444 555543 333 7899999999999999999997 55554332111111 368775
Q ss_pred ecccCCCcccceeEEEeChhHH-----------HHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhc---HHHH
Q 013204 271 FAKALSSAYMPIGAILVSPEVS-----------EVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERN---IVEQ 336 (447)
Q Consensus 271 ~sK~l~gg~~~~g~~~~~~~~~-----------~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~---~~~~ 336 (447)
++|+|.|+ +.|++++++++. +.....+ . ......+.++++..+++..++++.+...+ +.++
T Consensus 244 ~hK~L~GP--~Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~-~--a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~ 318 (475)
T PLN03226 244 THKSLRGP--RGGMIFFRKGPKPPKGQGEGAVYDYEDKIN-F--AVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQ 318 (475)
T ss_pred CcccccCC--CceEEEEchhhcccccCCCccHHHHHHHhc-c--ccCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 56999874 347788887654 2211100 0 11112233456667777778888876443 5788
Q ss_pred HHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee----------C
Q 013204 337 VNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS----------G 406 (447)
Q Consensus 337 ~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----------g 406 (447)
+.++.++|++.|++. +..++..-. ...+..+++..... ....+.+.|.+.||++-.. .
T Consensus 319 ~~~na~~L~~~L~~~-G~~l~~~~t-~~hi~lv~~~~~gi----------~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~ 386 (475)
T PLN03226 319 VKANAAALANRLMSK-GYKLVTGGT-DNHLVLWDLRPLGL----------TGSRVEKVLDLAHITLNKNAVPGDSSALVP 386 (475)
T ss_pred HHHHHHHHHHHHHhC-CCEEEcCCC-CCCEEEEEccCCCC----------CHHHHHHHHHHCCCEECCCCCCCCcccCCC
Confidence 888999999988774 433332111 12444556532211 1345677788889887632 2
Q ss_pred CEEEEe----cCCCCCHHHHHHHHHHHHHHHHH
Q 013204 407 DNIMMS----PPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 407 ~~iR~~----~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
..+|+. .+..++++|++++.+.|.++++.
T Consensus 387 ~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~~ 419 (475)
T PLN03226 387 GGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVTI 419 (475)
T ss_pred CCcccCcHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 458883 34678999999999999998873
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.4e-15 Score=146.38 Aligned_cols=242 Identities=12% Similarity=0.139 Sum_probs=145.6
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 154 (447)
..+...+|++++++++ +.+.+++++||++|+..++..+. ..++.|++..+.|.+......... .
T Consensus 74 ~~Pt~~~LE~~lA~l~---g~~~~l~~~sG~~Ai~~al~al~--------~~GD~Vl~~~~~Y~~~~~~~~~~~-----~ 137 (418)
T PLN02242 74 FNPTVLNLGRQMAALE---GTEAAYCTASGMSAISSVLLQLC--------SSGGHVVASNTLYGGTHALLAHFL-----P 137 (418)
T ss_pred CChhHHHHHHHHHHHh---CCCeEEEEccHHHHHHHHHHHHh--------CCCCEEEEcCCcHHHHHHHHHHhh-----h
Confidence 4667889999999986 45678899999999999998664 334788888888855532111000 0
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
+..+. .+..++.. +++++++.+. +.++++|++|..++..|.+.+ +++|+++|
T Consensus 138 ~~~G~---~~~~~d~~------------------d~e~l~~~i~---~~~tklV~lesp~NPtG~v~d----l~~I~~la 189 (418)
T PLN02242 138 RKCNI---TTTFVDIT------------------DLEAVKKAVV---PGKTKVLYFESISNPTLTVAD----IPELARIA 189 (418)
T ss_pred hccCc---eEEEcCCC------------------CHHHHHHhcC---cCCCEEEEEecCCCCCCcccC----HHHHHHHH
Confidence 00010 01111111 1366776664 224678888888777777765 99999999
Q ss_pred HhcCCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCcccc-eeEEEeChhHHHHhhhccCCCCccCcCCCC
Q 013204 235 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSAYMP-IGAILVSPEVSEVIHSQSNTLGSFSHGFTY 311 (447)
Q Consensus 235 ~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 311 (447)
++||+++|+||+|+.+. .. ...++ .|++ ++||.+++++.+ .|++++++++++.+.... ... ...+
T Consensus 190 ~~~gi~livDea~~~~~-~~----~~~~g--~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~----~~~-~~~~ 257 (418)
T PLN02242 190 HEKGVTVVVDNTFAPMV-LS----PARLG--ADVVVHSISKFISGGADIIAGAVCGPAELVNSMMDLH----HGA-LMLL 257 (418)
T ss_pred HHhCCEEEEECCCCccC-CC----HHHcC--CcEEEEeCccccCCCCCceEEEEEcCHHHHHHHHHHh----hhh-hhcc
Confidence 99999999999997442 11 11123 4665 578999876566 488888998888776321 000 0111
Q ss_pred CCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhcc---CCCcee----------eE---eeeeeEEEEEee
Q 013204 312 SGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFS---DSPIIG----------EI---RGTGLILGTEFA 372 (447)
Q Consensus 312 ~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~---~~~~~~----------~~---~~~g~~~~i~~~ 372 (447)
+..+..+.|++..+..-.-+...++..++.+++.+.|++.. .+|... .. .|.|.++.+++.
T Consensus 258 g~~~~~~~A~l~~~~l~tl~~r~~~~~~~a~~la~~L~~~~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~ 334 (418)
T PLN02242 258 GPTMNPKVAFELSERLPHLSLRMKEHCRRAMEYAKRMKELGLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMD 334 (418)
T ss_pred CCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCCCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEEC
Confidence 22222333333333211112244667777888888887651 111100 01 367888888885
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.4e-15 Score=144.89 Aligned_cols=286 Identities=15% Similarity=0.106 Sum_probs=167.3
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 154 (447)
+.+...+|++.+++++. .+..++++||+.|+..++.... ..+++||+..+.|.+...........
T Consensus 59 ~~pt~~~Le~~lA~l~G---~~~al~~~sG~~Ai~~~l~al~--------~~Gd~Vv~~~~~y~~~~~~~~~~~~~---- 123 (386)
T PRK06767 59 GNPTVKLFEERMAVLEG---GEEALAFGSGMAAISATLIGFL--------KAGDHIICSNGLYGCTYGFLEVLEEK---- 123 (386)
T ss_pred CCcchHHHHHHHHHHhC---CCcEEEECCHHHHHHHHHHHHh--------CCCCEEEEcCCcHHHHHHHHHHHHhh----
Confidence 44557889999999973 4567888999999988886553 33467887777664442211111100
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
++. ....++.. +++++++.+. +++++|++|..++..|.+.+ +++|.++|
T Consensus 124 --~gi---~~~~~~~~------------------d~~~l~~~i~----~~tklV~lesp~NptG~v~d----l~~I~~la 172 (386)
T PRK06767 124 --FMI---THSFCDME------------------TEADIENKIR----PNTKLIFVETPINPTMKLID----LKQVIRVA 172 (386)
T ss_pred --cCe---EEEEeCCC------------------CHHHHHHhhC----cCceEEEEeCCCCCCceecC----HHHHHHHH
Confidence 000 01111111 1256666554 24667888877777777766 89999999
Q ss_pred HhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCcccce-eEEEeChhHHHHhhhccCCCCccCcCCCC
Q 013204 235 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSAYMPI-GAILVSPEVSEVIHSQSNTLGSFSHGFTY 311 (447)
Q Consensus 235 ~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 311 (447)
+++|+++|+||+|+ .+..+.+. ....|+++ ++|.++|.+.++ |+++++++.++.+.... +. ..+.
T Consensus 173 ~~~g~~vivD~a~a-~~~~~~pl-----~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~---~~-~~g~-- 240 (386)
T PRK06767 173 KRNGLLVIVDNTFC-SPYLQRPL-----ELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPM---RK-DIGG-- 240 (386)
T ss_pred HHcCCEEEEECCCc-ccccCCch-----hcCCcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHH---HH-HhCC--
Confidence 99999999999985 22222221 12347765 569998754564 78888888766543210 00 0111
Q ss_pred CCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCcee---------eEeeeeeEEEEEeecCCCCCCCCC
Q 013204 312 SGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIG---------EIRGTGLILGTEFADNKSPNEPFP 382 (447)
Q Consensus 312 ~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~---------~~~~~g~~~~i~~~~~~~~~~~~~ 382 (447)
..+|+.++.++..|+.+ +...++.+++..++.+.|++.+....+. ...+.|.++.+++.....
T Consensus 241 ~~~~~~a~l~~~~L~tl--~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~~------ 312 (386)
T PRK06767 241 IMAPFDAWLLLRGLKTL--AVRMDRHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGVISFSIKGGKE------ 312 (386)
T ss_pred CCCHHHHHHHHcCCCcH--HHHHHHHHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCceEEEEEcCCHH------
Confidence 23566555555555433 2345666778888888887764322211 123457778888753210
Q ss_pred CCcchHHHHHHHHHHcCceEEeeC----------------------------CEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 383 PEWGIGAYFGAQCEKHGMLVRVSG----------------------------DNIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 383 ~~~~~~~~~~~~l~~~Gi~~~~~g----------------------------~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
....|.+.|...++.++.+| +.|||+ +--|+.+.+++-|++++.
T Consensus 313 ----~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~s----vGlE~~~dl~~dl~~al~ 384 (386)
T PRK06767 313 ----ETQAFINDLHFITIAVSLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLS----VGLESWEDIVSDLEQALK 384 (386)
T ss_pred ----HHHHHHHhCCccEEecCCCCcCccccCCCccccccCCHHHHHhcCCCCCeEEEE----eccCCHHHHHHHHHHHHh
Confidence 13346666655544443221 357888 344567777777777765
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.7e-14 Score=148.77 Aligned_cols=352 Identities=13% Similarity=0.066 Sum_probs=209.9
Q ss_pred ecCCccccccCCCCCHHHHHHHHHHHhc---CCcccccC-----cCCChHHHHHHHHHHHhcCcCCCCeEEEeCChh---
Q 013204 37 DSLAGLWCTALGGSEPRLVAAATAQLNT---LPFYHSFW-----NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGS--- 105 (447)
Q Consensus 37 D~~~~~~~~~lG~~~p~v~~a~~~~~~~---~~~~~~~~-----~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGs--- 105 (447)
|++...+..+||-|--+...++....-. +...|++. .+..+...++.+.+++++ +.+.|.|+++++
T Consensus 520 ~~~~~~~~~plgsctmk~n~~~~~~~~~~~~~~~~hp~~p~~~~~g~~~~~~~~r~~la~i~---g~~~v~f~pnaga~g 596 (993)
T PLN02414 520 DLSLVHSMIPLGSCTMKLNATTEMMPVTWPEFANIHPFAPVDQAQGYQEMFEDLGDLLCEIT---GFDSFSLQPNAGAAG 596 (993)
T ss_pred ccccccCCccCcccccccCchhhhhhhcCcchhhcCCCCCHHHHHHHHHHHHHHHHHHHHHh---CCCeEEEcCCCcHHH
Confidence 4444444577887544444333333222 11122221 223344567888888886 568999998777
Q ss_pred -hHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhH
Q 013204 106 -EANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEE 184 (447)
Q Consensus 106 -eA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (447)
+|+..+++.. ...+|+.. .++++...+-||+........|.. +..++++..
T Consensus 597 e~a~~~vi~~~---~~~~Gd~~-r~~vli~~~aH~sn~a~a~~~G~~------------vv~v~~d~~------------ 648 (993)
T PLN02414 597 EYAGLMVIRAY---HLSRGDHH-RNVCIIPVSAHGTNPASAAMCGMK------------IVVVGTDAK------------ 648 (993)
T ss_pred HHHHHHHHHHH---HhccCCCC-CCEEEeCCCcCccCHHHHHHCCCE------------EEEeccCCC------------
Confidence 6777766655 33334333 345666779999976655543322 122332111
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCC
Q 013204 185 YSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSI 264 (447)
Q Consensus 185 ~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~ 264 (447)
+..++++|++++.... +++++|++...++.+|...+ +++|.++|+++|+++++|-++. .+..+ ...-..+
T Consensus 649 -G~vDle~L~~~i~~~~-~~ta~V~vt~pSn~gg~e~~----I~eI~~iah~~Galv~vDgAq~-~a~~~---l~~p~~~ 718 (993)
T PLN02414 649 -GNINIEELRKAAEAHK-DNLAALMVTYPSTHGVYEEG----IDEICDIIHDNGGQVYMDGANM-NAQVG---LTSPGFI 718 (993)
T ss_pred -CCcCHHHHHHHHhccC-CCeEEEEEECCCccccccch----HHHHHHHHHHcCCEEEEEecCH-HhccC---cCCcccc
Confidence 1122588888886322 36888989888888887776 9999999999999999999885 21111 1111224
Q ss_pred CCCeeeec--ccCC----CcccceeEEEeChhHHHHhhhcc--CC---CCccC--cCCCC----CCcHHHHHHHHHHHHH
Q 013204 265 KPDLVSFA--KALS----SAYMPIGAILVSPEVSEVIHSQS--NT---LGSFS--HGFTY----SGHPVSCAVAIEALKI 327 (447)
Q Consensus 265 ~~d~v~~s--K~l~----gg~~~~g~~~~~~~~~~~~~~~~--~~---~~~~~--~~~t~----~~~~~~~~aa~a~l~~ 327 (447)
..|+++++ |.|+ +|+.++|++.++++++..+-... .. .+... ..+|. .++.+.+.+++.-+..
T Consensus 719 GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~ 798 (993)
T PLN02414 719 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAM 798 (993)
T ss_pred CCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHH
Confidence 47998874 7554 45577999999998876654211 00 00001 11232 2333455555666666
Q ss_pred HhhhcH---HHHHHHHHHHHHHhHhhccCCCceeeEeeeee-E--EEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCce
Q 013204 328 YKERNI---VEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGL-I--LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGML 401 (447)
Q Consensus 328 ~~~~~~---~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~-~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~ 401 (447)
+..+++ .+....+..+++++|++........ ..+. + +.+++..-+.. . ......+.++|++.|++
T Consensus 799 lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~---~~~~~~hEfv~~~~~l~~~-~-----g~~~~di~krL~d~Gih 869 (993)
T PLN02414 799 MGSEGLTDASKIAILNANYMAKRLEGHYPVLFRG---KNGTCAHEFIIDLRPFKNT-A-----GIEPEDVAKRLMDYGFH 869 (993)
T ss_pred HCHhHHHHHHHHHHHHHHHHHHHHHhhCCccccC---CCCCeeeeEEEeccccccc-c-----CCCHHHHHHHHHHcCcE
Confidence 655665 5667778888888887631111111 0111 1 11222210000 0 00135688999999998
Q ss_pred EE----eeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 402 VR----VSGDNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 402 ~~----~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
.. |..+.+|++|.-..+++|||+++++|.+...+.++
T Consensus 870 apt~~~pv~~~lmiepTE~~skeelDrf~~al~~i~~e~~~ 910 (993)
T PLN02414 870 APTMSWPVPGTLMIEPTESESKAELDRFCDALISIREEIAD 910 (993)
T ss_pred EeeeccccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 65 33567999999999999999999999999888765
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-13 Score=134.18 Aligned_cols=345 Identities=13% Similarity=0.049 Sum_probs=199.7
Q ss_pred CCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCC-CeEEE--eCChhhHHHHHHHHHHHHHHh----
Q 013204 49 GSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKM-AKVFF--TNSGSEANDTQVKLVWYYNNA---- 121 (447)
Q Consensus 49 ~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~v~~--~~sGseA~~~Al~~~~~~~~~---- 121 (447)
..+|++.+++...+.+........+...+...+..+++++++..... +++.| ++||||||..|+..++.....
T Consensus 52 ~~~p~~~~~~~~~l~~~~~np~s~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~ 131 (431)
T TIGR01788 52 WMEPEARKLMDETINKNMIDKDEYPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEA 131 (431)
T ss_pred CCCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHh
Confidence 35889999998888643222111222335556666777777742212 34555 799999999999887643211
Q ss_pred cCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhC
Q 013204 122 LGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEG 201 (447)
Q Consensus 122 ~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~ 201 (447)
.|.......++.+..-|-++..+...-+.. +..++.... + ...++++|++.+.
T Consensus 132 ~g~~~~~~~ii~s~~~H~sv~ka~~~lg~~------------v~~i~~d~~------~------~~vd~~~L~~~i~--- 184 (431)
T TIGR01788 132 AGKPTDKPNLVMGSNVQVCWEKFARYFDVE------------LREVPMDPG------R------YVIDPEQVVEAVD--- 184 (431)
T ss_pred cCCCCCCcEEEEcCcchHHHHHHHHHcCce------------eEEEecCCC------c------eeeCHHHHHHHHh---
Confidence 121112346666778888765554332211 112222110 0 0112477888776
Q ss_pred CCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhc------CCEEEEehhhcCCCc---ccc-ccccccCCCCCCeeee
Q 013204 202 PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKY------DILFIADEVICAFGR---LGT-MFGCDKYSIKPDLVSF 271 (447)
Q Consensus 202 ~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~------g~~li~DEv~~g~g~---~g~-~~~~~~~~~~~d~v~~ 271 (447)
+.+.+|++..++++.|.+.| +++|.++|++| |+++++|-+|.|+-. .++ .+.+. ....|.+++
T Consensus 185 -~~t~lV~~t~g~t~tG~idp----i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~--~~~~DSis~ 257 (431)
T TIGR01788 185 -ENTIGVVCILGTTYTGEYED----VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFR--LPRVKSINV 257 (431)
T ss_pred -hCCeEEEEEeCCCCCcccCC----HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcC--CCCceEEEE
Confidence 24568888889999999988 99999999999 999999999986421 121 11111 124688888
Q ss_pred c--ccCCCcccceeEEEeChh--HHHHhhhccCCCCccCcCCCCCCc-H-HHHHHHHHHHHHHhhhc---HHHHHHHHHH
Q 013204 272 A--KALSSAYMPIGAILVSPE--VSEVIHSQSNTLGSFSHGFTYSGH-P-VSCAVAIEALKIYKERN---IVEQVNKIAP 342 (447)
Q Consensus 272 s--K~l~gg~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~t~~~~-~-~~~~aa~a~l~~~~~~~---~~~~~~~~~~ 342 (447)
+ |.+.++ .++|+++.+++ +.+.+.......+.-....+.... + ....+.+..|..+...+ ..++..++.+
T Consensus 258 s~HK~~~~P-~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~ 336 (431)
T TIGR01788 258 SGHKYGLVY-PGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVAR 336 (431)
T ss_pred CchhccCCC-CCcEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Confidence 7 655455 68899988764 333332111111110000112111 1 13333455555444433 4566667778
Q ss_pred HHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEE----ee---C-CEEEEecC
Q 013204 343 KFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR----VS---G-DNIMMSPP 414 (447)
Q Consensus 343 ~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~----~~---g-~~iR~~~~ 414 (447)
++.+.|++++...++... ....++.+.+....... .....+.++|.++|+.+. |. | ..+|++..
T Consensus 337 ~l~~~L~~~~~~el~~~~-~~~~iV~Fr~~~~~~~~-------~~~~~l~~~L~~~G~~~~~~~~p~~~~~~~~lR~~~~ 408 (431)
T TIGR01788 337 YLAEEIAKLGPFEIISDG-SGIPLVAFKLKDDADPG-------YTLYDLSHRLRERGWIVPAYTLPKNAEDIVVMRIVVR 408 (431)
T ss_pred HHHHHHHhCCCEEEeeCC-CCceEEEEEeCCCCCCC-------cCHHHHHHHHHHCCCcccCCCCCCccCCeEEEEEEec
Confidence 888888776333333221 12334445444321000 013458889999998642 21 2 24899876
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 013204 415 FIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 415 ~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.-++++.++.+++.|++++.++
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 409 EGFSRDLAELLIEDIEAALAYL 430 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHhh
Confidence 6789999999999999998765
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.5e-13 Score=130.26 Aligned_cols=297 Identities=17% Similarity=0.114 Sum_probs=181.1
Q ss_pred ChHHHHHHHHHHHhcCcCCCC-eEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc
Q 013204 76 TKPSLDLAKELLEMFTASKMA-KVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154 (447)
Q Consensus 76 ~~~~~~l~~~l~~~~~~~~~~-~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 154 (447)
.+...+..+.+++++...+.+ ..+|++||||||..|+..++.. .+ ...|+.+..-|.+...+...-+...
T Consensus 64 ~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~------~~-~~~ii~s~~~H~Sv~ka~~~lg~~~-- 134 (380)
T PRK02769 64 FDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLAREL------FP-DGTLYYSKDTHYSVSKIARLLRIKS-- 134 (380)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHh------CC-CcEEEeCCCceehHHHHHHHcCCCC--
Confidence 345556777778887432222 3589999999999998887643 11 2356667777777654443222211
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
..+++... ...++++|++.+... ...+.+|++...++..|.+.| +++|.++|
T Consensus 135 ----------~~V~~~~~-------------g~id~~~L~~~i~~~-~~~t~lvv~t~gtt~tG~idp----i~~I~~i~ 186 (380)
T PRK02769 135 ----------RVITSLPN-------------GEIDYDDLISKIKEN-KNQPPIIFANIGTTMTGAIDN----IKEIQEIL 186 (380)
T ss_pred ----------ceeccCCC-------------CcCcHHHHHHHHHhC-CCCcEEEEEEeCCCCCcccCC----HHHHHHHH
Confidence 11111110 012247788888654 234678888888999999988 99999999
Q ss_pred HhcC---CEEEEehhhcCCCcccc---ccccccCCCCCCeeeec--ccCCCcccceeEEEeChhHHHHhhhccCCCCccC
Q 013204 235 KKYD---ILFIADEVICAFGRLGT---MFGCDKYSIKPDLVSFA--KALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFS 306 (447)
Q Consensus 235 ~~~g---~~li~DEv~~g~g~~g~---~~~~~~~~~~~d~v~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 306 (447)
++|| +++++|-+|.|+ .... ...++... ..|.++++ |.++++ .++|+++.+++..+.+...........
T Consensus 187 ~~~g~~~~~lHVDaA~gg~-~~p~~~~~~~~d~~~-~vDsis~s~HK~~~~P-~g~G~l~~r~~~~~~~~~~~~yl~~~d 263 (380)
T PRK02769 187 KKIGIDDYYIHADAALSGM-ILPFVNNPPPFSFAD-GIDSIAISGHKFIGSP-MPCGIVLAKKKYVERISVDVDYIGSRD 263 (380)
T ss_pred HHhCCCceEEEEEecccce-eecccCccccCCccC-CCCEEEECCcccCCCC-CCcEEEEEehhhhhhcccCccccCCCC
Confidence 9998 699999999864 2210 00111111 47888887 666656 689999999887665532211111111
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHhhhc---HHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCC
Q 013204 307 HGFTYSGHPVSCAVAIEALKIYKERN---IVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPP 383 (447)
Q Consensus 307 ~~~t~~~~~~~~~aa~a~l~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~ 383 (447)
.....+.+..+.++.+++|+.+...+ ..++..++.+++.+.|++. +.. .........+. |..+.
T Consensus 264 ~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~~-g~~--~~~~p~~~~v~--f~~~~-------- 330 (380)
T PRK02769 264 QTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQAN-GIP--AWRNPNSITVV--FPCPS-------- 330 (380)
T ss_pred CCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC-CCE--EEcCCCceEEE--EcCCC--------
Confidence 11122233455666777787766544 4466677777888888664 222 12222223322 33221
Q ss_pred CcchHHHHHHHHHHcCceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 384 EWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 384 ~~~~~~~~~~~l~~~Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
..+ .+|..+.+..+.+|++...-++.+.||.+++-|.+.+..
T Consensus 331 -----~~~-----~~~w~l~~~~~~~hi~~~~~~~~~~~~~f~~dl~~~~~~ 372 (380)
T PRK02769 331 -----ERI-----WKKWHLATSGNQAHIITMPHHNKQQIDSLIDELIFDLKN 372 (380)
T ss_pred -----HHH-----HhCeeEcccCCEEEEEECCCCCHHHHHHHHHHHHHHHhc
Confidence 012 156766666677888877788999999999988887753
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-13 Score=127.15 Aligned_cols=306 Identities=15% Similarity=0.127 Sum_probs=177.7
Q ss_pred HHHHHHHHHHHhcC---cCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc
Q 013204 78 PSLDLAKELLEMFT---ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154 (447)
Q Consensus 78 ~~~~l~~~l~~~~~---~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 154 (447)
..+++++-|-.... ..++++++.+++++.||++....+. ..++..++.+|-|.|......-.+|....
T Consensus 126 frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLa--------dpgdafLvPtPyY~gfdrdl~~rTgveiv- 196 (471)
T KOG0256|consen 126 FRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLA--------DPGDAFLVPTPYYPGFDRDLRWRTGVEIV- 196 (471)
T ss_pred HHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhc--------CCCceeeecCCCCCcccccceeccCceEE-
Confidence 34444444444332 2377899999999999999887653 44588999999998874333332332110
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhh--CCCcEEEE-EEccccCCCCCccCChhHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE--GPETIAAF-IAEPVIGAGGVIPPPATYFEKVQ 231 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~a~v-i~epv~~~~G~~~~~~~~l~~l~ 231 (447)
..+....+-++ .+ .+.||+++.+. ...++++| |++|.|+-| ...+++.|..+.
T Consensus 197 ---------pv~c~Ss~~f~-----it--------v~alE~A~~~A~~~~~kVkGvlitNPsNPLG--~~~~~e~L~~ll 252 (471)
T KOG0256|consen 197 ---------PVHCSSSNGFQ-----IT--------VEALEAALNQARKLGLKVKGVLITNPSNPLG--TTLSPEELISLL 252 (471)
T ss_pred ---------EEEeecCCCcc-----cc--------HHHHHHHHHHHHHhCCceeEEEEeCCCCCCC--CccCHHHHHHHH
Confidence 01111111111 11 24455554331 23456655 455555555 445789999999
Q ss_pred HHHHhcCCEEEEehhhcCCCcccccccc--cc---CCCCCCee----eecccCCCcccceeEEEe-ChhHHHHhhhccCC
Q 013204 232 AVVKKYDILFIADEVICAFGRLGTMFGC--DK---YSIKPDLV----SFAKALSSAYMPIGAILV-SPEVSEVIHSQSNT 301 (447)
Q Consensus 232 ~l~~~~g~~li~DEv~~g~g~~g~~~~~--~~---~~~~~d~v----~~sK~l~gg~~~~g~~~~-~~~~~~~~~~~~~~ 301 (447)
.++.++++.+|+||||+|-......|-. +. ....+|-+ .+||-||-+++++|++.. ++++.....+-
T Consensus 253 ~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~km--- 329 (471)
T KOG0256|consen 253 NFASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATKM--- 329 (471)
T ss_pred HHHhhcceEEEeehhhcccccCccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHHH---
Confidence 9999999999999999865443332211 11 11245533 579988876699999997 55676666531
Q ss_pred CCccCcCCCCC-CcHHHHHHHHHHHH--HHhh---hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCC
Q 013204 302 LGSFSHGFTYS-GHPVSCAVAIEALK--IYKE---RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNK 375 (447)
Q Consensus 302 ~~~~~~~~t~~-~~~~~~~aa~a~l~--~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~ 375 (447)
. +|+ .++..+.-....|. .+.+ ++-..+++.+.+++.+.|+++ ++..-..+.|++.++++..--
T Consensus 330 ----s---sf~~vSs~tQ~~la~LLSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~l---gI~cl~s~AGlF~wvDlr~lL 399 (471)
T KOG0256|consen 330 ----S---SFGLVSSQTQYLLASLLSDEEFTREYLRENNKRLRIRHRYIVEGLKAL---GIPCLKSNAGLFCWVDLRKLL 399 (471)
T ss_pred ----h---hccCCcHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhHHhc---CCceeecCCeeEEEEEhHHhc
Confidence 1 221 12333332222222 1111 122345555566666777766 343344567889898876422
Q ss_pred CCCCCCCCCcchHHHHHHHHHHc-CceEEeeC-------CEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 376 SPNEPFPPEWGIGAYFGAQCEKH-GMLVRVSG-------DNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~g-------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
.+. .+.+ -..++++++++ ++.++|+. +.+|++.. +..++.++-+++||+..+.+
T Consensus 400 ~s~-tfe~----El~Lw~~i~~~vklnlSpG~s~~C~EpGWFRvcFA-n~~~~t~~~am~Ri~~~~~~ 461 (471)
T KOG0256|consen 400 TSL-TFEG----ELELWERILDNVKLNLSPGSSCHCHEPGWFRVCFA-NMSEETLEVAMRRLKQFLDS 461 (471)
T ss_pred CcC-ChHH----HHHHHHHHHHhhccccCCCCcceecCCCeEEEEec-cCCHHHHHHHHHHHHHHHHh
Confidence 111 1211 12366777776 99999874 67999932 34555555599999988874
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-14 Score=138.46 Aligned_cols=299 Identities=16% Similarity=0.117 Sum_probs=167.1
Q ss_pred CCCCHHHHHHHHHHHhcCCcc-cc-cC--c-CCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhc
Q 013204 48 GGSEPRLVAAATAQLNTLPFY-HS-FW--N-RTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNAL 122 (447)
Q Consensus 48 G~~~p~v~~a~~~~~~~~~~~-~~-~~--~-~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~ 122 (447)
|..++.+.+++.+.+.+.... +. .. . ...+...++.+++++++. .+.++++|++|+++|++.+++.+.....
T Consensus 8 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g-~~~~~v~~~~g~t~a~~~~l~~l~~~~~-- 84 (353)
T TIGR03235 8 TPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALG-ADTEEVIFTSGATESNNLAILGLARAGE-- 84 (353)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEeCCHHHHHHHHHHHHHHhcc--
Confidence 457899999999987542111 11 00 0 012345678888888863 4567899999999999999886642210
Q ss_pred CCCCcceEEEEcCCCccchhhhhcc---cCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHh
Q 013204 123 GRPNKKKFIARQKSYHGSTLIAASL---SGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILK 199 (447)
Q Consensus 123 ~~~~~~~vi~~~~~yhg~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~ 199 (447)
.++++.|++ ....|.+....... .|.. +..++....+ ..+++++++.+.
T Consensus 85 -~~g~~~vi~-~~~~~~s~~~~~~~~~~~G~~------------v~~v~~~~~~-------------~~d~~~l~~~l~- 136 (353)
T TIGR03235 85 -QKGKKHIIT-SAIEHPAVLEPIRALERNGFT------------VTYLPVDESG-------------RIDVDELADAIR- 136 (353)
T ss_pred -cCCCCeeeE-cccccHHHHHHHHHHHhcCCE------------EEEEccCCCC-------------cCCHHHHHHhCC-
Confidence 122244544 44555543222211 1111 1112211100 011366776664
Q ss_pred hCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec--ccCCC
Q 013204 200 EGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSS 277 (447)
Q Consensus 200 ~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l~g 277 (447)
+++++|+++.+++..|.+.+ +++|.++|++||+++|+|++|+ +|.. .+ +.....+|++++| |.+ |
T Consensus 137 ---~~~~lv~~~~~~n~tG~~~~----~~~I~~l~~~~~~~~ivD~a~~-~g~~--~~--~~~~~~~D~~~~s~~K~~-g 203 (353)
T TIGR03235 137 ---PDTLLVSIMHVNNETGSIQP----IREIAEVLEAHEAFFHVDAAQV-VGKI--TV--DLSADRIDLISCSGHKIY-G 203 (353)
T ss_pred ---CCCEEEEEEcccCCceeccC----HHHHHHHHHHcCCEEEEEchhh-cCCc--cc--cccccCCCEEEeehhhcC-C
Confidence 24678888888888888877 8999999999999999999987 5443 12 2222357888877 964 4
Q ss_pred cccceeEEEeChhHHHHhhhccCCC--CccCcCCCCCCcHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHhHhhccC
Q 013204 278 AYMPIGAILVSPEVSEVIHSQSNTL--GSFSHGFTYSGHPVSCAVAIEALKIYKE--RNIVEQVNKIAPKFQDGVKAFSD 353 (447)
Q Consensus 278 g~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~t~~~~~~~~~aa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~ 353 (447)
+ .++|+++.+++............ .........+.++..+.+..++++.+.. ++..++.+++.+++++.|+++ +
T Consensus 204 p-~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~-g 281 (353)
T TIGR03235 204 P-KGIGALVIRKRGKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQTL-G 281 (353)
T ss_pred C-CceEEEEEccCcccccccCceeeCCCCcCccccCCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC-C
Confidence 3 46899999887432211000000 0000011233455556666667776542 345677777778888777653 2
Q ss_pred CCceeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee
Q 013204 354 SPIIGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS 405 (447)
Q Consensus 354 ~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~ 405 (447)
..+...- .....++.+.+... ....+.+.|. ++|.++++
T Consensus 282 ~~~~~~~~~~~~~i~~~~~~~~------------~~~~v~~~L~-~~i~v~~g 321 (353)
T TIGR03235 282 VKLNGDPAETIPHILNFSIDGV------------NSEALIVNLR-ADAAVSTG 321 (353)
T ss_pred eEEeCCcccccCCEEEEEeCCc------------CHHHHHHHHh-CCeEEEch
Confidence 2222111 11122334433211 1345667775 48888755
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-14 Score=141.27 Aligned_cols=237 Identities=15% Similarity=0.167 Sum_probs=142.2
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 154 (447)
..+...++++.+++.+ +.+.+++++||++|+..+++... ..+++||+..+.| |.+...... ..
T Consensus 52 ~~p~~~~le~~la~l~---g~~~~~~~~sG~~Ai~~al~al~--------~~Gd~Vl~~~~~~-~~t~~~~~~-----~~ 114 (380)
T TIGR01325 52 ANPTVAAFEERIAALE---GAERAVATATGMSAIQAALMTLL--------QAGDHVVASRSLF-GSTVGFISE-----IL 114 (380)
T ss_pred CCchHHHHHHHHHHHh---CCCcEEEECCHHHHHHHHHHHHh--------CCCCEEEEecCCc-chHHHHHHH-----HH
Confidence 4566788999999886 33578899999999999998653 2346677765544 443221110 00
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
..++. .+..++..+ .+++++.+. +++++|++|.+++..|.+.+ +++|.++|
T Consensus 115 ~~~g~---~v~~v~~~d------------------~~~l~~~i~----~~tklV~le~p~np~g~~~d----l~~I~~la 165 (380)
T TIGR01325 115 PRFGI---EVSFVDPTD------------------LNAWEAAVK----PNTKLVFVETPSNPLGELVD----IAALAELA 165 (380)
T ss_pred HHhCC---EEEEECCCC------------------HHHHHHhcC----CCceEEEEECCCCCCCeeeC----HHHHHHHH
Confidence 00111 111222211 255665553 35678888888777777765 99999999
Q ss_pred HhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCcccce-eEEEeChhHHHHhhhccCCCCccCcCCCC
Q 013204 235 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSAYMPI-GAILVSPEVSEVIHSQSNTLGSFSHGFTY 311 (447)
Q Consensus 235 ~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 311 (447)
+++|+++|+||+++.. ... ......+|+++ ++|.++|++..+ |++++++++++.+..... .. ..
T Consensus 166 ~~~gi~livD~a~~~~-~~~-----~pl~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~-----~~--g~ 232 (380)
T TIGR01325 166 HAIGALLVVDNVFATP-VLQ-----QPLKLGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLR-----HT--GP 232 (380)
T ss_pred HHcCCEEEEECCCccc-ccC-----CchhhCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHHH-----hh--CC
Confidence 9999999999998632 111 11223468876 679998854555 677788888777653210 11 22
Q ss_pred CCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccC-----CCcee----------eEeeeeeEEEEEee
Q 013204 312 SGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD-----SPIIG----------EIRGTGLILGTEFA 372 (447)
Q Consensus 312 ~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~-----~~~~~----------~~~~~g~~~~i~~~ 372 (447)
..+|..+..++..++.+.. ..++..++..++.+.|++.+. +|... ...+.|.++.+++.
T Consensus 233 ~~~p~~a~~~l~~l~tl~~--r~~~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~ 306 (380)
T TIGR01325 233 AMSPFNAWVLLKGLETLSL--RMQKQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVA 306 (380)
T ss_pred CCCHHHHHHHHhccCcHHH--HHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEC
Confidence 3345555555555554432 245555566666666665421 22111 12356888888886
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.5e-13 Score=128.60 Aligned_cols=314 Identities=12% Similarity=0.068 Sum_probs=187.4
Q ss_pred CHHHHHHHHHHHhcC-CcccccC--c-CCChHHHHHHHHHHHhcCcCCCCeE--EEeCChhhHHHHHHHHHHHHHHhcCC
Q 013204 51 EPRLVAAATAQLNTL-PFYHSFW--N-RTTKPSLDLAKELLEMFTASKMAKV--FFTNSGSEANDTQVKLVWYYNNALGR 124 (447)
Q Consensus 51 ~p~v~~a~~~~~~~~-~~~~~~~--~-~~~~~~~~l~~~l~~~~~~~~~~~v--~~~~sGseA~~~Al~~~~~~~~~~~~ 124 (447)
++.+++++.+...+. +..++.. + ...+...+..+.+++++. .+.+.+ +||+||||||..|+..++.+.
T Consensus 36 ~~~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg-~~~~~~~G~fTsGGTEaNl~al~~ar~~~----- 109 (374)
T PLN03032 36 DYGELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWE-LEKDEYWGYITTCGTEGNLHGILVGREVF----- 109 (374)
T ss_pred ChHHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhC-CCCccCCEEEeCchHHHHHHHHHHHHHhC-----
Confidence 456777888777542 2111111 1 134455567777777774 344444 999999999999999887431
Q ss_pred CCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCc
Q 013204 125 PNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPET 204 (447)
Q Consensus 125 ~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~ 204 (447)
. ..+++....-|-+..-+...-+.. ...++..... ..++++|++.+.... ..
T Consensus 110 -~-~~~vi~s~~~H~Sv~kaa~~lg~~------------~~~V~~d~~g-------------~id~~~L~~~i~~~~-~~ 161 (374)
T PLN03032 110 -P-DGILYASRESHYSVFKAARMYRME------------AVKVPTLPSG-------------EIDYDDLERALAKNR-DK 161 (374)
T ss_pred -C-CcEEEeCCCceeHHHHHHHHcCCC------------CeEeeeCCCC-------------cCcHHHHHHHHHHcC-CC
Confidence 1 236777888888765554433321 1122221111 122588888886432 24
Q ss_pred EEEEEEccccCCCCCccCChhHHHHHHHHHHhcC-----CEEEEehhhcCCCcccc-----ccccccCCCCCCeeeec--
Q 013204 205 IAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYD-----ILFIADEVICAFGRLGT-----MFGCDKYSIKPDLVSFA-- 272 (447)
Q Consensus 205 ~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g-----~~li~DEv~~g~g~~g~-----~~~~~~~~~~~d~v~~s-- 272 (447)
+.+|++...+++.|.+.| +++|.++|++|| +++++|-++.|+ .... .+.+ ....|.++++
T Consensus 162 ~~lvv~tagtt~tG~idp----i~eI~~i~~~~g~~~~~~~lHvDaA~gg~-~~p~~~~~~~~~~---~~~vDSis~s~H 233 (374)
T PLN03032 162 PAILNVNIGTTVKGAVDD----LDRILRILKELGYTEDRFYIHCDGALFGL-MMPFVSRAPEVTF---RKPIGSVSVSGH 233 (374)
T ss_pred CEEEEEEecCcCCccCCC----HHHHHHHHHHhCCCCCCeeEEEEccchhh-hhhccCCCcccCC---CcCCcEEEECcc
Confidence 567777778888898988 999999999997 589999998754 2210 1111 1247888887
Q ss_pred ccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCC--cHHHHHHHHHHHHHHhhhcH---HHHHHHHHHHHHHh
Q 013204 273 KALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSG--HPVSCAVAIEALKIYKERNI---VEQVNKIAPKFQDG 347 (447)
Q Consensus 273 K~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~--~~~~~~aa~a~l~~~~~~~~---~~~~~~~~~~l~~~ 347 (447)
|.++.+ .++|+++.+++..+.+.........- ..|..+ +....++.+++|+.+..+++ .++..++.+++.+.
T Consensus 234 K~~g~P-~g~G~ll~r~~~~~~~~~~~~Yl~~~--d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~ 310 (374)
T PLN03032 234 KFLGCP-MPCGVALTRKKHVKALSQNVEYLNSR--DATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDR 310 (374)
T ss_pred cccCCC-cCeEEEEEEchhhHhhccCCcccCCC--CCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 544446 78999999987776554322111111 112322 33455667777777666554 45566677778787
Q ss_pred HhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeCCEEEEecCCCCCHHHHHHHHH
Q 013204 348 VKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELIS 427 (447)
Q Consensus 348 L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~ 427 (447)
|++. +.. ......... +-|..+. . .. ..+|..+....+.++++...-++.+.+|++++
T Consensus 311 l~~~-~~~--~~~~p~~~~--V~f~~~~------------~----~~-~~~~w~l~~~~~~~hi~vm~~~~~~~id~fi~ 368 (374)
T PLN03032 311 LTEA-GLT--CRLNELSST--VVFERPM------------D----EA-FIKKWQLACEGDIAHVVVMPNVTVEKLDEFVE 368 (374)
T ss_pred HHhC-CCc--EEECCCceE--EEEcCCC------------c----Hh-HhheeeecccCCEEEEEECCCCCHHHHHHHHH
Confidence 7764 222 122222222 2333321 0 11 22466666555677777776688999999998
Q ss_pred HHHH
Q 013204 428 KYGK 431 (447)
Q Consensus 428 ~l~~ 431 (447)
-|++
T Consensus 369 dl~~ 372 (374)
T PLN03032 369 ELVE 372 (374)
T ss_pred HHhc
Confidence 8765
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.1e-14 Score=138.93 Aligned_cols=235 Identities=17% Similarity=0.143 Sum_probs=146.7
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh---hcccCCc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA---ASLSGLP 151 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~---~~~~~~~ 151 (447)
..+...+++++++++. +.+.+++++||++|+..++.... ..++.||+..+.|++..... +...|..
T Consensus 62 ~~p~~~~le~~lA~l~---g~~~~i~~ssG~~Ai~~~l~all--------~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~ 130 (398)
T PRK08249 62 TNPTVQAFEEKVRILE---GAEAATAFSTGMAAISNTLYTFL--------KPGDRVVSIKDTYGGTNKIFTEFLPRMGVD 130 (398)
T ss_pred CChHHHHHHHHHHHHh---CCCeEEEeCChHHHHHHHHHHhc--------CCCCEEEEcCCchHHHHHHHHHHHhhCCeE
Confidence 5567788999999886 34578889999999999887553 33578999999997753211 1111111
Q ss_pred cccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHH
Q 013204 152 ALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 231 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~ 231 (447)
+..++.. +++++++.+. +++++|++|..++..|.+.+ +++|.
T Consensus 131 ------------v~~vd~~------------------d~e~l~~~i~----~~tklV~ie~p~NPtg~v~d----l~~I~ 172 (398)
T PRK08249 131 ------------VTLCETG------------------DHEQIEAEIA----KGCDLLYLETPTNPTLKIVD----IERLA 172 (398)
T ss_pred ------------EEEcCCC------------------CHHHHHHhcC----CCCeEEEEECCCCCCCccCC----HHHHH
Confidence 1111111 1366666664 24667888777677777776 99999
Q ss_pred HHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCcccce-eEEEeChhHHHHhhhccCCCCccCcC
Q 013204 232 AVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSAYMPI-GAILVSPEVSEVIHSQSNTLGSFSHG 308 (447)
Q Consensus 232 ~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (447)
++|++||+++|+|++|..+ ....+ .....|+++ ++|.++|.+-.+ |++++++++++.+... ...
T Consensus 173 ~la~~~gi~livD~t~a~~-~~~~~-----l~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~-------~~~ 239 (398)
T PRK08249 173 AAAKKVGALVVVDNTFATP-INQNP-----LALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHY-------REI 239 (398)
T ss_pred HHHHHcCCEEEEECCcCcc-ccCCc-----hhhCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHH-------HHh
Confidence 9999999999999998733 21111 123467664 579998732344 6677788888777532 112
Q ss_pred CCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhcc-----CCCcee----------eEeeeeeEEEEEeec
Q 013204 309 FTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFS-----DSPIIG----------EIRGTGLILGTEFAD 373 (447)
Q Consensus 309 ~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~~~----------~~~~~g~~~~i~~~~ 373 (447)
.....++..++.++..++.+. ...++..++.+.+.+.|++.+ .+|... ...|.|.++.+++..
T Consensus 240 ~g~~~s~~~a~l~l~~l~tL~--~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~ 317 (398)
T PRK08249 240 NGATMDPMSAYLILRGMKTLK--LRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKG 317 (398)
T ss_pred cCCCCCHHHHHHHHhCcchHH--HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEcC
Confidence 234567777776666666543 234555666677777776531 122111 123568888888863
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.3e-13 Score=139.80 Aligned_cols=315 Identities=11% Similarity=0.106 Sum_probs=188.0
Q ss_pred ChHHHHHHHHHHHhcCcCCCCeEEEeC-ChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc
Q 013204 76 TKPSLDLAKELLEMFTASKMAKVFFTN-SGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154 (447)
Q Consensus 76 ~~~~~~l~~~l~~~~~~~~~~~v~~~~-sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 154 (447)
.....++++.+++++ +++.+.+.+ +|+.++.+++..++.|+..+|++++++||+ ..+-||+........|..
T Consensus 542 lq~i~elq~~l~eLt---Gmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLI-p~saHgtNpasa~~~Gie--- 614 (954)
T PRK12566 542 RAMIDELEAWLCAIT---GFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLI-PSSAHGTNPASAQMAGMR--- 614 (954)
T ss_pred HHHHHHHHHHHHHHH---CCCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEe-cccccccCHHHHHHCCCE---
Confidence 344567888888886 677777776 899999999999999999999877766655 557777754443322221
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
+..+++... +..++++|++.+.... +++++|++...+..|+...+ +++|+++|
T Consensus 615 ---------Vv~Vp~D~~-------------G~iDle~L~a~I~~~~-~~laaVmiT~Pnt~Gv~e~~----V~eI~~ia 667 (954)
T PRK12566 615 ---------VVIVECDPD-------------GNVDLDDLKAKAAAAG-DRLSCLMITYPSTHGVYEEG----IREICEVV 667 (954)
T ss_pred ---------EEEeccCCC-------------CCcCHHHHHHHhhccC-CCEEEEEEEecCcCceecch----HHHHHHHH
Confidence 122222111 1122588888886433 46777777766655543322 99999999
Q ss_pred HhcCCEEEEehhhcCCCcccccccccc-CCCCCCeeeec--ccCC----CcccceeEEEeChhHHHHhhhcc--C----C
Q 013204 235 KKYDILFIADEVICAFGRLGTMFGCDK-YSIKPDLVSFA--KALS----SAYMPIGAILVSPEVSEVIHSQS--N----T 301 (447)
Q Consensus 235 ~~~g~~li~DEv~~g~g~~g~~~~~~~-~~~~~d~v~~s--K~l~----gg~~~~g~~~~~~~~~~~~~~~~--~----~ 301 (447)
+++|+++++|-++. .+.. .... -.+..|+++++ |.|+ +|++.+|.+..++.+...+...+ . .
T Consensus 668 h~~Galv~vDgA~~-~a~~----~l~~Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~ 742 (954)
T PRK12566 668 HQHGGQVYMDGANL-NAQV----GLARPADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPD 742 (954)
T ss_pred HHcCCEEEEEeeCh-hhcc----CCCChhhcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCC
Confidence 99999999998875 2111 1111 12457998876 8654 45566777777776666554321 0 0
Q ss_pred CCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHH---HHHHHHHHHHHhHhhccCCCceeeE-eee-eeEEEEEeecCCC
Q 013204 302 LGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVE---QVNKIAPKFQDGVKAFSDSPIIGEI-RGT-GLILGTEFADNKS 376 (447)
Q Consensus 302 ~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~---~~~~~~~~l~~~L~~l~~~~~~~~~-~~~-g~~~~i~~~~~~~ 376 (447)
.+........+++.+.+.+++.-+..+..+ +.+ ....+..+++++|.+. +++...- .+. ..-+.+++..-+.
T Consensus 743 ~r~ga~S~~~~gsa~~l~~A~~Yi~~lG~e-Lk~aa~~ailnAnYla~rL~~~--~~v~~~~~~~~~~hEfii~~~~l~~ 819 (954)
T PRK12566 743 PNNGAVSAAPWGSASILPISWMYIAMMGPQ-LADASEVAILSANYLANQLGGA--FPVLYRGRNERVAHECILDLRPLKA 819 (954)
T ss_pred CCCCceeecccchHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHhHhh--CCCCcCCCCCCeeeEEEEEcccccc
Confidence 110011112223333344444445544444 322 2234677888888653 2221110 001 0111223221110
Q ss_pred CCCCCCCCcchHHHHHHHHHHcCceEE----eeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 377 PNEPFPPEWGIGAYFGAQCEKHGMLVR----VSGDNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~l~~~Gi~~~----~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
... .....+.++|++.|++.. +..+.+|++|.-..+++|||+++++|++..+++++
T Consensus 820 ~~g------~~~~dvakRL~d~Gihapt~~fPv~~~LmIepTE~eskeEIDrf~eAL~~I~~e~~~ 879 (954)
T PRK12566 820 QTG------ISEEDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESKAELDRFVEAMLSIRAEIGK 879 (954)
T ss_pred ccC------CCHHHHHHHHHHCCcEEeEEeeccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 000 013568889999998865 33567999999999999999999999999888654
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.9e-14 Score=137.49 Aligned_cols=239 Identities=14% Similarity=0.081 Sum_probs=144.6
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 154 (447)
..+...+|+++++++. +.+.+++++||+.|+..++.... ..+++|++..+.|.+..........
T Consensus 57 ~~p~~~~le~~lA~l~---g~~~av~~~sG~~Ai~~~l~al~--------~~Gd~Vi~~~~~y~~t~~~~~~~~~----- 120 (391)
T TIGR01328 57 GNPTVSNLEGRIAFLE---GTEAAVATSSGMGAIAATLLTIL--------KAGDHLISDECLYGCTFALLEHALT----- 120 (391)
T ss_pred CCchHHHHHHHHHHHh---CCCcEEEECCHHHHHHHHHHHHh--------CCCCEEEEecCcchHHHHHHHHHHh-----
Confidence 4556788999999996 34468899999999998887653 3346788877777544321111000
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
.++ ..+..++.. +++++++.+. +++++|++|.+++..|.+.+ +++|.++|
T Consensus 121 -~~G---~~~~~vd~~------------------d~e~l~~~i~----~~tklV~le~p~Np~G~v~d----l~~I~~la 170 (391)
T TIGR01328 121 -KFG---IQVDFINMA------------------IPEEVKAHIK----DNTKIVYFETPANPTMKLID----MERVCRDA 170 (391)
T ss_pred -cCC---eEEEEECCC------------------CHHHHHHhhc----cCCeEEEEECCCCCCCcccC----HHHHHHHH
Confidence 000 001122221 1356666554 34668888877777776666 99999999
Q ss_pred HhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCcccc-eeEEEeChhHHHHhhhccCCCCccCcCCCC
Q 013204 235 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSAYMP-IGAILVSPEVSEVIHSQSNTLGSFSHGFTY 311 (447)
Q Consensus 235 ~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 311 (447)
+++|+++|+||++. .+..+.+ .+...|+++ ++|.+++.+.+ .|++++++++++.++.... ......
T Consensus 171 ~~~gi~livD~a~a-~~~~~~~-----~~~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~-----~~~~g~ 239 (391)
T TIGR01328 171 HSQGVKVIVDNTFA-TPMLTNP-----VALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGI-----KDMTGS 239 (391)
T ss_pred HHcCCEEEEECCCc-hhccCCc-----hhcCCCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHH-----HhCCCC
Confidence 99999999999986 2222222 123467765 56999874344 4777888888877753110 001123
Q ss_pred CCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccC-----CCcee----------eEeeeeeEEEEEee
Q 013204 312 SGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD-----SPIIG----------EIRGTGLILGTEFA 372 (447)
Q Consensus 312 ~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~-----~~~~~----------~~~~~g~~~~i~~~ 372 (447)
..+|..++.++..|+.+ +...++..++..++.+.|++.+. +|... ..++.|.++.+++.
T Consensus 240 ~l~~~~a~l~l~~L~tl--~~r~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~ 313 (391)
T TIGR01328 240 VISPFDAWLILRGLKTL--NIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELK 313 (391)
T ss_pred CCCcHHHHHHHhCcCcH--HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeC
Confidence 44666666666555433 22356666677777777765422 11110 12355778888885
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4e-13 Score=142.44 Aligned_cols=315 Identities=13% Similarity=0.105 Sum_probs=183.9
Q ss_pred hHHHHHHHHHHHhcCcCCCCeEEEeC-ChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccC
Q 013204 77 KPSLDLAKELLEMFTASKMAKVFFTN-SGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQ 155 (447)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~~v~~~~-sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 155 (447)
....++.+++++++ +++.+.+.. +|+.|+..++..++.+...+|+..+++ ++...+-|++........|..
T Consensus 542 ~~i~e~q~~l~elt---G~d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~-vlis~~aH~snp~sa~~~G~~---- 613 (954)
T PRK05367 542 ELIDQLEAWLAEIT---GYDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDV-CLIPSSAHGTNPASAVMAGMK---- 613 (954)
T ss_pred HHHHHHHHHHHHHH---CCCCEEECccHHHHHHHHHHHHHHHHhhccCCCCCCE-EEEEchhhhhhHHHHHHCCCE----
Confidence 45567888888886 455566665 778888888878887776666544444 555677888765544333321
Q ss_pred CCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHH
Q 013204 156 KFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVK 235 (447)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~ 235 (447)
+..+++... +..++++|++.+.... .++++|++......|+...+ +++|+++|+
T Consensus 614 --------vv~v~~d~~-------------G~iD~~~L~~~i~~~~-~~la~V~it~pst~G~~e~~----I~eI~~i~h 667 (954)
T PRK05367 614 --------VVVVACDEN-------------GNIDLDDLRAKAEEHA-DNLAAIMITYPSTHGVFEET----IREICEIVH 667 (954)
T ss_pred --------EEEECCCCC-------------CCcCHHHHHHHHhccC-CCeEEEEEEcCCCCeeecCC----HHHHHHHHH
Confidence 122222111 0112477887776422 35666666554444433344 999999999
Q ss_pred hcCCEEEEehhhcCCCccccccccccCCCCCCeeeec--ccCC----CcccceeEEEeChhHHHHhhhccCCCCccCc-C
Q 013204 236 KYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALS----SAYMPIGAILVSPEVSEVIHSQSNTLGSFSH-G 308 (447)
Q Consensus 236 ~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l~----gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~ 308 (447)
++|+++++|.++.+. ..+.. ..-.+..|+++++ |.|+ +|+..+|++.+++.+...+-...-....... .
T Consensus 668 ~~G~~v~VDgA~~~a-l~~l~---~pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~~~~~~~~ 743 (954)
T PRK05367 668 EHGGQVYLDGANMNA-QVGLA---RPGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQIAGGETGI 743 (954)
T ss_pred HcCCEEEEECcChhh-ccCCC---ChhhcCCCEEEecCcccCCCCcCCCCCceEEEeecccccccCCCCccCcCCCCCCc
Confidence 999999999998521 12110 1112347998876 8654 4557788888887766555322100000000 0
Q ss_pred CCCCCcHH----HHHHHHHHHHHHhhhcHHHHHH---HHHHHHHHhHhhccCCCcee---eEeeeeeEEEEEeecCCCCC
Q 013204 309 FTYSGHPV----SCAVAIEALKIYKERNIVEQVN---KIAPKFQDGVKAFSDSPIIG---EIRGTGLILGTEFADNKSPN 378 (447)
Q Consensus 309 ~t~~~~~~----~~~aa~a~l~~~~~~~~~~~~~---~~~~~l~~~L~~l~~~~~~~---~~~~~g~~~~i~~~~~~~~~ 378 (447)
++....+. .+..++..+..+..+++.+..+ .+.+++.++|++........ .+..+ +.+++...+...
T Consensus 744 g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~~~~~~~~~~~~~~~e---~i~~~~~~~~~~ 820 (954)
T PRK05367 744 GAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDHYPVLYTGANGRVAHE---CILDLRPLKEST 820 (954)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCCCcccc---eEEEeecccccC
Confidence 11121222 2222444455555566665555 68888888886641111110 01111 122332111000
Q ss_pred CCCCCCcchHHHHHHHHHHcCceEEee----CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 379 EPFPPEWGIGAYFGAQCEKHGMLVRVS----GDNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 379 ~~~~~~~~~~~~~~~~l~~~Gi~~~~~----g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
......+.++|.+.|+..... .+.+|++|.-..+++|||+++++|.+...++++
T Consensus 821 ------g~~~~di~krL~d~G~~~~t~~~pv~~~l~i~ptE~~s~~elDr~~~al~~i~~e~~~ 878 (954)
T PRK05367 821 ------GITVDDIAKRLIDYGFHAPTMSFPVAGTLMVEPTESESKAELDRFCDAMIAIRAEIDE 878 (954)
T ss_pred ------CCCHHHHHHHHHHCCCeEeecCCccCCEEEEEeeecCCHHHHHHHHHHHHHHHHHHHH
Confidence 002456899999999987642 467999999999999999999999998888765
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-13 Score=130.46 Aligned_cols=320 Identities=11% Similarity=0.023 Sum_probs=185.3
Q ss_pred CCHHHHHHHHHHHhcCCc----ccccCcCCC---hHHHHHHHHHHHhcCcCCCCeEEEeC-ChhhHHHHHHHHHHHHHHh
Q 013204 50 SEPRLVAAATAQLNTLPF----YHSFWNRTT---KPSLDLAKELLEMFTASKMAKVFFTN-SGSEANDTQVKLVWYYNNA 121 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~----~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~~v~~~~-sGseA~~~Al~~~~~~~~~ 121 (447)
.|..|++++.+...+... .+....... +...+..+.+.+++......+|+|++ |||+|++.++..+.
T Consensus 3 ~p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~----- 77 (349)
T TIGR01364 3 LPEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLL----- 77 (349)
T ss_pred CCHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcC-----
Confidence 466889999988874321 111111122 44556677788777422234677775 49999999998663
Q ss_pred cCCCCcceEEEEcCCCccchhhhhccc-CCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhh
Q 013204 122 LGRPNKKKFIARQKSYHGSTLIAASLS-GLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE 200 (447)
Q Consensus 122 ~~~~~~~~vi~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~ 200 (447)
.+.++++++..++.|.....+... |... .+..++...+ .+ ..++++...+
T Consensus 78 ---~~~~~~l~i~~G~fg~r~~~~a~~~g~~~-------------~~~~~~~~~~---~~---------~~~~~~~~~~- 128 (349)
T TIGR01364 78 ---AEGKVADYIVTGAWSKKAAKEAKKYGVVN-------------VVASGKEGNY---TK---------IPDPSTWEIS- 128 (349)
T ss_pred ---CCCCeEEEEECCHHHHHHHHHHHHhCCcE-------------EEeccccCCC---CC---------CCCHHhcCCC-
Confidence 234677777777767644333211 1100 0010000000 00 0112211111
Q ss_pred CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec--ccCCCc
Q 013204 201 GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSA 278 (447)
Q Consensus 201 ~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l~gg 278 (447)
.++.+|.+..+-+++|...+ ++++.+++++++|-+++ +|.. +...+. -|++++| |.++ +
T Consensus 129 --~~~~~v~~th~ETstGv~~~---------~l~~~~~~l~iVDavss-~g~~--~id~~~----~d~~~~ssqK~lg-P 189 (349)
T TIGR01364 129 --EDAAYVHYCANETIHGVEFR---------ELPDVKNAPLVADMSSN-ILSR--PIDVSK----FGLIYAGAQKNIG-P 189 (349)
T ss_pred --CCCCEEEEcCCCCcccEecc---------eecccCCCeEEEEcccc-ccCc--cCCHHH----ccEEEEecccccC-C
Confidence 24556777676666676543 66777899999999987 4322 222222 2477665 8885 5
Q ss_pred ccceeEEEeChhHHHHhhhccCCCCc----cCcCCC-CCCcHHHHHHHHHHHHHHhhh-c---HHHHHHHHHHHHHHhHh
Q 013204 279 YMPIGAILVSPEVSEVIHSQSNTLGS----FSHGFT-YSGHPVSCAVAIEALKIYKER-N---IVEQVNKIAPKFQDGVK 349 (447)
Q Consensus 279 ~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~t-~~~~~~~~~aa~a~l~~~~~~-~---~~~~~~~~~~~l~~~L~ 349 (447)
.++|+++.++++.+.+......... .....+ ++++...+.+..++|+.+.+. + +.++.+++.+++++.|+
T Consensus 190 -~Glg~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~ 268 (349)
T TIGR01364 190 -AGLTVVIVRKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTID 268 (349)
T ss_pred -CceEEEEECHHHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999988776432110000 001122 355556666677888887665 3 44666677778888888
Q ss_pred hccCCCce-ee-EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC---CEEEEecCCCCCHHHHHH
Q 013204 350 AFSDSPII-GE-IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG---DNIMMSPPFIMSPEEVDE 424 (447)
Q Consensus 350 ~l~~~~~~-~~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g---~~iR~~~~~~~t~e~i~~ 424 (447)
++.+.... .. ......++.+.++... +...+...+.++|+++.++. +.+|+++...+|+|||++
T Consensus 269 ~~~gl~~~~~~~~~rs~~v~sf~~~~~~-----------~~~~~~~~~~~~Gi~~~~~~~~~g~vRvS~~~~nt~edid~ 337 (349)
T TIGR01364 269 NSNGFYRNPVDPRNRSRMNVVFTLGNEE-----------LEKRFLKEAEERGLVSLKGHRSVGGMRASIYNAMPLEGVQA 337 (349)
T ss_pred hCCCeeccCCCHHHcCCeEEEEecCChh-----------HhHHHHHHHHHCCCcccCCccccCeeEEECcCCCCHHHHHH
Confidence 77322111 11 0111233444443221 22446678889999655442 569999999999999999
Q ss_pred HHHHHHHHHH
Q 013204 425 LISKYGKALK 434 (447)
Q Consensus 425 ~~~~l~~~l~ 434 (447)
++++|++.++
T Consensus 338 l~~al~~~~~ 347 (349)
T TIGR01364 338 LVDFMKEFQK 347 (349)
T ss_pred HHHHHHHHHH
Confidence 9999998664
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.2e-14 Score=138.47 Aligned_cols=214 Identities=13% Similarity=0.109 Sum_probs=135.1
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh---hcccCCc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA---ASLSGLP 151 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~---~~~~~~~ 151 (447)
+.+...+|++++++++. .+.+++++||+.|+..++.... ..+++||+..+.|....... +...|..
T Consensus 62 ~~p~~~~Le~~iA~~~g---~~~~l~~~sG~~Ai~~al~~ll--------~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~ 130 (400)
T PRK06234 62 GNPTSTEVENKLALLEG---GEAAVVAASGMGAISSSLWSAL--------KAGDHVVASDTLYGCTFALLNHGLTRYGVE 130 (400)
T ss_pred CCccHHHHHHHHHHHhC---CCcEEEEcCHHHHHHHHHHHHh--------CCCCEEEEecCccchHHHHHHHHHhhCCeE
Confidence 45667899999999973 3468999999999998887543 33467888777765543221 1111111
Q ss_pred cccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHH
Q 013204 152 ALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 231 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~ 231 (447)
+..++.. +++++++.+. +++++|++|.+++..|.+.+ +++|.
T Consensus 131 ------------v~~vd~~------------------d~e~l~~~i~----~~tklI~iesP~NPtG~v~d----l~~I~ 172 (400)
T PRK06234 131 ------------VTFVDTS------------------NLEEVRNALK----ANTKVVYLETPANPTLKVTD----IKAIS 172 (400)
T ss_pred ------------EEEECCC------------------CHHHHHHHhc----cCCeEEEEECCCCCCCCcCC----HHHHH
Confidence 1111111 1366777664 24567888877777777766 99999
Q ss_pred HHHHhc--CCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCcccce-eEEEeChhHHHHhhhccCCCCccC
Q 013204 232 AVVKKY--DILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSAYMPI-GAILVSPEVSEVIHSQSNTLGSFS 306 (447)
Q Consensus 232 ~l~~~~--g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg~~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 306 (447)
++|+++ |+++|+||+|... ..+.+ .+...|+++ ++|.++|.+.++ |++++++++++.+.... ..
T Consensus 173 ~la~~~~~~i~livDea~~~~-~~~~~-----l~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~-----~~ 241 (400)
T PRK06234 173 NIAHENNKECLVFVDNTFCTP-YIQRP-----LQLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFG-----IK 241 (400)
T ss_pred HHHHhcCCCCEEEEECCCCch-hcCCc-----hhhCCcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHH-----HH
Confidence 999997 9999999998632 22211 122467765 579998744554 88889998877765210 01
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhh
Q 013204 307 HGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA 350 (447)
Q Consensus 307 ~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~ 350 (447)
...+...+|..++.++..++-+ +...++..++..++.+.|++
T Consensus 242 ~~~g~~l~p~~a~l~~~~l~tl--~~r~~~~~~na~~~a~~L~~ 283 (400)
T PRK06234 242 DMTGSVIGPFEAFLIIRGMKTL--QIRMEKHCKNAMKVAKFLES 283 (400)
T ss_pred HhcCCCCCHHHHHHHHhccCcH--HHHHHHHHHHHHHHHHHHHc
Confidence 1123455777776666666533 22345555666777777765
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.7e-14 Score=134.78 Aligned_cols=235 Identities=16% Similarity=0.144 Sum_probs=139.0
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchh---hhhcccCCc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTL---IAASLSGLP 151 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~---~~~~~~~~~ 151 (447)
..+...+++++++++.. .+..+.++||++|+..++.... ..+++|++..+.|.+... ..+...|..
T Consensus 43 ~~p~~~~L~~~lA~l~g---~~~~v~~~sG~~ai~~~l~al~--------~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~ 111 (376)
T PRK06460 43 ANPTVLELTKKIVELEN---AEMGVAFSSGMGAISTTALALL--------KPGNSVLVHRDMFGRSYRFFTDYLKNWGVN 111 (376)
T ss_pred CCccHHHHHHHHHHHhC---CCcEEEeCCHHHHHHHHHHHHh--------CCCCEEEEecCCcCcHHHHHHHHHHhhCcE
Confidence 45667889999998863 2335566889999998887653 334678887766644321 111111111
Q ss_pred cccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHH
Q 013204 152 ALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 231 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~ 231 (447)
+..++. .+ .+.+++++. +++++|+++.+++..|.+.+ +++|.
T Consensus 112 ------------v~~~~~----------~~--------~~~l~~~~~----~~tklV~l~sp~NPtG~v~d----~~~I~ 153 (376)
T PRK06460 112 ------------VDASNP----------GS--------DNIIEKAKS----KRYDVVFVENITNPLLRVVD----ITELS 153 (376)
T ss_pred ------------EEEECC----------CC--------HHHHHHhcC----CCceEEEEECCCCCCCcccC----HHHHH
Confidence 111111 00 022333322 35667888888777787776 78999
Q ss_pred HHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCc-ccceeEEEeChhHHHHhhhccCCCCccCcC
Q 013204 232 AVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSA-YMPIGAILVSPEVSEVIHSQSNTLGSFSHG 308 (447)
Q Consensus 232 ~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (447)
++|++||+++|+||+|... ... .......|++ +++|.++|. ...+|++++++++++.+... ...
T Consensus 154 ~la~~~g~~vivDea~~~~-~~~-----~~l~~~~divv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~-------~~~ 220 (376)
T PRK06460 154 KVCKENGSILIVDATFSTP-INQ-----KPLELGADIVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQM-------RRT 220 (376)
T ss_pred HHHHHcCCEEEEECCcCcc-ccC-----ChhhcCCCEEEeecceeccCCCCceEEEEecCHHHHHHHHHH-------HHh
Confidence 9999999999999998632 111 1111225666 478998752 13588999999988877532 111
Q ss_pred CCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccC-----CCcee----------eEeeeeeEEEEEeec
Q 013204 309 FTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD-----SPIIG----------EIRGTGLILGTEFAD 373 (447)
Q Consensus 309 ~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~-----~~~~~----------~~~~~g~~~~i~~~~ 373 (447)
...+.+|..+..++..++.++ ...++..++.+++.+.|++.+. +|... ...+.|.++.+++..
T Consensus 221 ~g~~~~~~~a~~~l~~~~~l~--~r~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~ 298 (376)
T PRK06460 221 LGTSLDPHAAYLTLRGIKTLK--IRMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNG 298 (376)
T ss_pred cCCCCCHHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC
Confidence 123345544444444444432 3456677777888777775421 12111 123678888888863
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=8e-14 Score=136.04 Aligned_cols=234 Identities=15% Similarity=0.144 Sum_probs=138.8
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh---hcccCCc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA---ASLSGLP 151 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~---~~~~~~~ 151 (447)
..+...++++++++++ +.+.+++++||++|+..++..+. .++++||+..+.|.+..... +...|..
T Consensus 59 ~~p~~~~le~~la~l~---g~~~~v~~ssG~~Ai~~al~al~--------~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~ 127 (390)
T PRK08133 59 TNPTVTMFQERLAALE---GAEACVATASGMAAILAVVMALL--------QAGDHVVSSRSLFGSTVSLFEKIFARFGIE 127 (390)
T ss_pred CChHHHHHHHHHHHHh---CCCcEEEECCHHHHHHHHHHHHh--------CCCCEEEEccCcchhHHHHHHHHHHHcCcE
Confidence 4566788999999886 34568999999999999988653 33467888776665543211 1111111
Q ss_pred cccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHH
Q 013204 152 ALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 231 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~ 231 (447)
+..++..+ .+++++.+. +++++|++|.+++..|.+.+ +++|.
T Consensus 128 ------------v~~vd~~d------------------~~~l~~~i~----~~tklV~ie~p~NptG~v~d----l~~I~ 169 (390)
T PRK08133 128 ------------TTFVDLTD------------------LDAWRAAVR----PNTKLFFLETPSNPLTELAD----IAALA 169 (390)
T ss_pred ------------EEEECCCC------------------HHHHHHhcC----cCCeEEEEECCCCCCCCcCC----HHHHH
Confidence 11122111 266666664 35667888777777777765 89999
Q ss_pred HHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCcccce-eEEEeChhHHHHhhhccCCCCccCcC
Q 013204 232 AVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSAYMPI-GAILVSPEVSEVIHSQSNTLGSFSHG 308 (447)
Q Consensus 232 ~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (447)
++|++||+++|+|+++... ....+ .....|+++ ++|.+++.+.++ |++++++++++.+... ...
T Consensus 170 ~la~~~gi~livD~t~~~~-~~~~p-----l~~g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~-------~~~ 236 (390)
T PRK08133 170 EIAHAAGALLVVDNCFCTP-ALQQP-----LKLGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGF-------LRT 236 (390)
T ss_pred HHHHHcCCEEEEECCCccc-ccCCc-----hhhCCcEEEeecceeecCCcceEeEEEEcCHHHHHHHHHH-------HHH
Confidence 9999999999999998522 11111 112357765 579998755666 5666777766655421 111
Q ss_pred CCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccC-----CCcee----------eEeeeeeEEEEEee
Q 013204 309 FTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD-----SPIIG----------EIRGTGLILGTEFA 372 (447)
Q Consensus 309 ~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~-----~~~~~----------~~~~~g~~~~i~~~ 372 (447)
.....++..+..++..++.+. ...++..++...+.+.|++.+. +|... ...|.|.++.+++.
T Consensus 237 ~g~~~~~~~a~~~l~gl~tl~--~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~ 313 (390)
T PRK08133 237 AGPTLSPFNAWVFLKGLETLS--LRMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVK 313 (390)
T ss_pred hCCCCCHHHHHHHHcccchHH--HHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEc
Confidence 123345555555544444322 1234444555566666654321 12111 12466888888885
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.9e-13 Score=135.31 Aligned_cols=287 Identities=14% Similarity=0.159 Sum_probs=160.2
Q ss_pred HHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcc----cCCcccc
Q 013204 79 SLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASL----SGLPALH 154 (447)
Q Consensus 79 ~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~----~~~~~~~ 154 (447)
..++.+.+++++ +.+.+.+.+++||+++++.++...+. .++++|++.++.| ++....+.. .|..
T Consensus 114 ~~e~~~~la~l~-g~~~~~v~~~~g~t~~~~~~~~a~~~-------~~g~~Vlv~~~~~-~~~~~~~~~~~~~~G~~--- 181 (447)
T PRK00451 114 IFEYQTMICELT-GMDVANASMYDGATALAEAALMAVRI-------TKRKKVLVSGAVH-PEYREVLKTYLKGQGIE--- 181 (447)
T ss_pred HHHHHHHHHHHh-CCCcceEEecCcHHHHHHHHHHHHHh-------cCCCEEEEeCccC-HHHHHHHHHHHHhCCcE---
Confidence 344556667776 34556889999999988877765421 1346777766544 443322211 1111
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
+..+++... ..+++++++.+. +++++|++... +..|.+.+ +++|.++|
T Consensus 182 ---------~~~v~~~~~--------------~~d~~~l~~~i~----~~t~~v~l~~p-n~tG~v~~----l~~I~~~a 229 (447)
T PRK00451 182 ---------VVEVPYEDG--------------VTDLEALEAAVD----DDTAAVVVQYP-NFFGVIED----LEEIAEIA 229 (447)
T ss_pred ---------EEEecCCCC--------------CCCHHHHHHhcC----CCeEEEEEECC-CCCCeeCC----HHHHHHHH
Confidence 111221100 011366776664 34666666655 44677765 99999999
Q ss_pred HhcCCEEEE--ehhhcCCCccccccccccCCCCCCeeee-----cccCCCcccceeEEEeChhHHHHhhhc---------
Q 013204 235 KKYDILFIA--DEVICAFGRLGTMFGCDKYSIKPDLVSF-----AKALSSAYMPIGAILVSPEVSEVIHSQ--------- 298 (447)
Q Consensus 235 ~~~g~~li~--DEv~~g~g~~g~~~~~~~~~~~~d~v~~-----sK~l~gg~~~~g~~~~~~~~~~~~~~~--------- 298 (447)
+++|+++++ |.+..|+ ... . .....|++++ ||.+..|++++|+++.++++++.+...
T Consensus 230 ~~~~~~~iv~~d~~~~g~--~~~---~--~~~~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~ 302 (447)
T PRK00451 230 HAGGALFIVGVDPVSLGL--LKP---P--GEYGADIVVGEGQPLGIPLSFGGPYLGFFATRKKLVRQMPGRLVGETVDAD 302 (447)
T ss_pred HHCCCEEEEEcChHHhcc--CCC---c--ccCCCCEEEECCCcCCCCCCCCCCCchHHHhhHHHHhhCCCCEeeeecccC
Confidence 999999998 6553222 111 1 1234687754 454433337899999999888764210
Q ss_pred c-----------CCCCccCcCC-CCCCc-HHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHhHhhccCCCceeeEee
Q 013204 299 S-----------NTLGSFSHGF-TYSGH-PVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRG 362 (447)
Q Consensus 299 ~-----------~~~~~~~~~~-t~~~~-~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~ 362 (447)
. .....+.+.. +.+.+ ++...++..+++.+.+ ++..++..++.+++++.|+++....+ ..+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~---~~~ 379 (447)
T PRK00451 303 GKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIGGVEL---FDG 379 (447)
T ss_pred CCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcCCEEe---cCC
Confidence 0 0000111111 11111 1221223333443322 34556777788888888876622211 111
Q ss_pred eeeE--EEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEE----ee----CCEEEEecCCCCCHHHHHHHHHHHHHH
Q 013204 363 TGLI--LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR----VS----GDNIMMSPPFIMSPEEVDELISKYGKA 432 (447)
Q Consensus 363 ~g~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~----~~----g~~iR~~~~~~~t~e~i~~~~~~l~~~ 432 (447)
..+ +.+.+. . ....+.++|+++|++.. +. .+.+|++++..+|+++|+++++.|++.
T Consensus 380 -~~~~~~~v~~~--~-----------~~~~~~~~L~~~gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~ 445 (447)
T PRK00451 380 -PFFNEFVVRLP--K-----------PAEEVNEALLEKGILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEV 445 (447)
T ss_pred -CeEEEEEEecC--C-----------CHHHHHHHHHhcCCCCCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 111 123331 1 13468899999988743 11 247999999889999999999999876
Q ss_pred H
Q 013204 433 L 433 (447)
Q Consensus 433 l 433 (447)
+
T Consensus 446 ~ 446 (447)
T PRK00451 446 L 446 (447)
T ss_pred h
Confidence 4
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-13 Score=135.51 Aligned_cols=240 Identities=14% Similarity=0.108 Sum_probs=145.3
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhh---cccCCc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAA---SLSGLP 151 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~---~~~~~~ 151 (447)
+.+....|++.++++. +.+.+++++||+.|+..++..+. ..++.|++.++.|.+...... ...|..
T Consensus 81 ~~Pt~~~Le~~lA~le---g~~~~iv~~sG~~Ai~~~l~al~--------~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~ 149 (427)
T PRK07049 81 NHPNSEIVEDRLAVYE---GAESAALFSSGMSAIATTLLAFV--------RPGDVILHSQPLYGGTETLLAKTFRNFGVG 149 (427)
T ss_pred CCcCHHHHHHHHHHHh---CCCcEEEEccHHHHHHHHHHHHh--------CCCCEEEEcCCCcccHHHHHHHHHHhcCcE
Confidence 4555778999999886 34578999999999998887654 345789999999988743321 111211
Q ss_pred cccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhh-CCCcEEEEEEccccCCCCCccCChhHHHHH
Q 013204 152 ALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE-GPETIAAFIAEPVIGAGGVIPPPATYFEKV 230 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~-~~~~~a~vi~epv~~~~G~~~~~~~~l~~l 230 (447)
. +.+++ ..+ .+++++.+... ...++++|++|..++..|.+. + ++++
T Consensus 150 ~--------------v~~~~-------~~d--------~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~-d---~~~l 196 (427)
T PRK07049 150 A--------------VGFAD-------GLS--------EAAIGAAAEAAAAKGRVSLILIETPANPTNSLV-D---VAAV 196 (427)
T ss_pred E--------------EEEeC-------CCC--------HHHHHHHHHhhccCCCceEEEEECCCCCCCccc-C---HHHH
Confidence 0 11110 000 24555555321 123566777777777777555 4 4555
Q ss_pred HHHHHh------cCCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCC-cccceeEEEeChhHHHHhhhccCC
Q 013204 231 QAVVKK------YDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSS-AYMPIGAILVSPEVSEVIHSQSNT 301 (447)
Q Consensus 231 ~~l~~~------~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~g-g~~~~g~~~~~~~~~~~~~~~~~~ 301 (447)
.++++. +++++|+||++.+..... + . ....|++ ++||.++| +++++|++++++++++.+...
T Consensus 197 ~~la~~~~~~~~~~~~vvvDety~~~~~~~-p--l---~~g~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~~--- 267 (427)
T PRK07049 197 RRVADAIEARQGHRPIIACDNTLLGPVFQK-P--L---EHGADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRAL--- 267 (427)
T ss_pred HHHHHHhhhcccCCCEEEEECCccccccCC-c--c---ccCCCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHHH---
Confidence 555554 799999999976432111 1 1 1124666 57899995 458999999999988877632
Q ss_pred CCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccC-----CC-ce-e----------eEeeee
Q 013204 302 LGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD-----SP-II-G----------EIRGTG 364 (447)
Q Consensus 302 ~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~-----~~-~~-~----------~~~~~g 364 (447)
........++..+..++..++.+. ...++..++...+.+.|++.+. +| .. . ...|.|
T Consensus 268 ----~~~~g~~ls~~~a~l~~r~L~tl~--~R~~~~~~~a~~la~~L~~~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g 341 (427)
T PRK07049 268 ----RSAIGTQLDPHSCWMLGRSLETLV--LRMERANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYKRQCTGAG 341 (427)
T ss_pred ----HHhcCCCCCHHHHHHHHcCCChHH--HHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCCCccHHHHHhhCCCCc
Confidence 111234456777777776665432 2234556666777777765422 22 10 0 113567
Q ss_pred eEEEEEeec
Q 013204 365 LILGTEFAD 373 (447)
Q Consensus 365 ~~~~i~~~~ 373 (447)
.++.+++..
T Consensus 342 ~~~s~~~~~ 350 (427)
T PRK07049 342 STFSFDIKG 350 (427)
T ss_pred cEEEEEEcC
Confidence 788888853
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.9e-12 Score=124.41 Aligned_cols=317 Identities=15% Similarity=0.118 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEE
Q 013204 52 PRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFI 131 (447)
Q Consensus 52 p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi 131 (447)
++-.+++.+.+...... ..+...++++.+++++ +.++.++++||++|+..+++.+. -.+++.||
T Consensus 10 ~~~~~~v~~~~~~~~~~------~g~~~~~le~~la~~~---g~~~~v~~~sgt~al~~~l~al~-------~~~Gd~Vi 73 (380)
T TIGR03588 10 QDDIDAVVEVLKSDFLT------QGPTVPAFEEALAEYV---GAKYAVAFNSATSALHIACLALG-------VGPGDRVW 73 (380)
T ss_pred HHHHHHHHHHHhcCCcc------CChhHHHHHHHHHHHH---CCCeEEEEcCHHHHHHHHHHHcC-------CCCCCEEE
Confidence 45577777777654221 2344678889999887 33467778899999999998651 13347899
Q ss_pred EEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEc
Q 013204 132 ARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAE 211 (447)
Q Consensus 132 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~e 211 (447)
+..+.|++........+..+. .++.... . ...+++++++.+....++++.+|++.
T Consensus 74 v~~~~~~~~~~~~~~~G~~~~-------------~~~~~~~-----------~-~~~d~~~l~~~i~~~~~~~t~~v~~~ 128 (380)
T TIGR03588 74 TTPITFVATANCALYCGAKVD-------------FVDIDPD-----------T-GNIDEDALEKKLAAAKGKLPKAIVPV 128 (380)
T ss_pred eCCcchHHHHHHHHHcCCEEE-------------EEecCCC-----------c-CCcCHHHHHHHhhcccCCCceEEEEe
Confidence 888888776433332222111 1111000 0 00113777777753211244555532
Q ss_pred cccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCC--CCCeeeec----ccCCCcccceeEE
Q 013204 212 PVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSI--KPDLVSFA----KALSSAYMPIGAI 285 (447)
Q Consensus 212 pv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~--~~d~v~~s----K~l~gg~~~~g~~ 285 (447)
. ..|...+ +++|.++|++||+++|.|++|+ +|.. +.....|. ..|+.++| |.++.| ..|++
T Consensus 129 ~---~~G~~~~----~~~i~~l~~~~~~~lI~D~a~a-~g~~---~~~~~~g~~~~~d~~~~S~~~~K~~~~~--~GG~v 195 (380)
T TIGR03588 129 D---FAGKSVD----MQAIAALAKKHGLKIIEDASHA-LGAE---YGGKPVGNCRYADATVFSFHPVKIITTA--EGGAV 195 (380)
T ss_pred C---CCCccCC----HHHHHHHHHHcCCEEEEECCCc-ccCc---cCCEeCCCccccceEEEecCCCCccccc--CceEE
Confidence 2 2455544 8999999999999999999998 4321 11122233 34888776 777654 34555
Q ss_pred Ee-ChhHHHHhhhccCC-----C----------Ccc---CcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 013204 286 LV-SPEVSEVIHSQSNT-----L----------GSF---SHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQD 346 (447)
Q Consensus 286 ~~-~~~~~~~~~~~~~~-----~----------~~~---~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~ 346 (447)
+. ++++.+.++..... . ..+ ..+..+..+.+..+.+++.|+.+ ++..++.+++.+++.+
T Consensus 196 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l--~~~~~~r~~~~~~~~~ 273 (380)
T TIGR03588 196 TTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKKL--DRFVAKRREIAARYDR 273 (380)
T ss_pred EECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 54 56676655421000 0 000 00112233445555555555543 4556777788888888
Q ss_pred hHhhccCCCceeeE---eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee--------------C---
Q 013204 347 GVKAFSDSPIIGEI---RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS--------------G--- 406 (447)
Q Consensus 347 ~L~~l~~~~~~~~~---~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--------------g--- 406 (447)
.|..+......... ...-.+..+.+...... ....+.+.|.++||.+... +
T Consensus 274 ~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------~r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~ 344 (380)
T TIGR03588 274 LLKDLPYFTPLTIPLGSKSAWHLYPILLDQEFGC---------TRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGD 344 (380)
T ss_pred HhcCCCCccCCCCCCCCEeEEEEEEEEECCcCCC---------CHHHHHHHHHHCCCCcccCCcccccChhhhccCCcCC
Confidence 88776322211110 01112223333321100 1456888899999876511 0
Q ss_pred ---------CEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 407 ---------DNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 407 ---------~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
..+++..+...|++|++.+++.|++++
T Consensus 345 ~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~~~ 380 (380)
T TIGR03588 345 LPSAENFYLAEISLPLHPALTLEQQQRVVETLRKVL 380 (380)
T ss_pred CcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHHHhC
Confidence 347777777889999999999998764
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-13 Score=132.26 Aligned_cols=318 Identities=14% Similarity=0.095 Sum_probs=183.4
Q ss_pred CCHHHHHHHHHHHhcCC-cccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEe-CChhhHHHHHHHHHHHHHHhcCCCCc
Q 013204 50 SEPRLVAAATAQLNTLP-FYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFT-NSGSEANDTQVKLVWYYNNALGRPNK 127 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~-~sGseA~~~Al~~~~~~~~~~~~~~~ 127 (447)
-+|+|++++.+...... ..|+. ....+...+..+.+.+++.-.+..+|+|+ .|||.+++.++..+. .
T Consensus 14 ~~~~v~~a~~~~~~~~~~~~hr~-~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~--------~-- 82 (361)
T TIGR01366 14 VRLEQLQALTTTAASLFGTSHRQ-APVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLI--------E-- 82 (361)
T ss_pred CCHHHHHHHHhcCccccccCcCC-hHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhcc--------c--
Confidence 47889988775432211 12221 11234556677788888743233478886 679999999998652 1
Q ss_pred ceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEE
Q 013204 128 KKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAA 207 (447)
Q Consensus 128 ~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~ 207 (447)
++++++..+.+|.......... +... .+..++++.. +.++..+ ..++++
T Consensus 83 ~~~l~i~~G~~~~~~~~~a~~~-~~~~--------~~~~~~~~~~------------------~~~~~~~----~~~~~l 131 (361)
T TIGR01366 83 KKSLHLSFGEFSSKFAKAVKLA-PWLG--------EPIIVTADPG------------------SAPEPQA----DPGVDV 131 (361)
T ss_pred ccccEEecCHHHHHHHHHHHhh-hccC--------CceEEecCCC------------------CCCCCcc----CCCCCE
Confidence 1344444565665433332111 0000 0111121110 0011111 235778
Q ss_pred EEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec--ccCCCcccceeEE
Q 013204 208 FIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMPIGAI 285 (447)
Q Consensus 208 vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l~gg~~~~g~~ 285 (447)
|.+..+.+..|.+.| +++| ++++|+++|+|-+++ +|.. +...+ ..|++++| |.+++. .+++++
T Consensus 132 V~~~h~et~tG~~~p----i~~I---~~~~g~~~iVDavqs-~g~~--~idv~----~~D~~~~s~~K~lg~~-~Gl~~~ 196 (361)
T TIGR01366 132 IAWAHNETSTGVAVP----VRRP---EGSDDALVVIDATSG-AGGL--PVDIA----ETDVYYFAPQKNFASD-GGLWLA 196 (361)
T ss_pred EEEcccCCccceecc----cccc---cccCCCeEEEEcCcc-ccCC--CCCHH----HCCEEEEEchhhcCCC-CceEEE
Confidence 888888888888887 5555 689999999999998 5322 22222 15888876 888764 356677
Q ss_pred EeChhHHHHhhhccCC------C--------CccCcCCCCCCcHHHHHHHHHHHHHHhhh-c---HHHHHHHHHHHHHHh
Q 013204 286 LVSPEVSEVIHSQSNT------L--------GSFSHGFTYSGHPVSCAVAIEALKIYKER-N---IVEQVNKIAPKFQDG 347 (447)
Q Consensus 286 ~~~~~~~~~~~~~~~~------~--------~~~~~~~t~~~~~~~~~aa~a~l~~~~~~-~---~~~~~~~~~~~l~~~ 347 (447)
+.++++++.+...... . ......+.++++...+.+..++++.+.+. + ..++.+++.+++++.
T Consensus 197 ~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~ 276 (361)
T TIGR01366 197 IMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSW 276 (361)
T ss_pred EECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 7899887766521100 0 00001222333444444566778877654 2 346667777788888
Q ss_pred HhhccCCC-ceeeEe-eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-----CCEEEEecCCCCCHH
Q 013204 348 VKAFSDSP-IIGEIR-GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-----GDNIMMSPPFIMSPE 420 (447)
Q Consensus 348 L~~l~~~~-~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----g~~iR~~~~~~~t~e 420 (447)
++++.... ...... .......+.+.+.. ....+.+.|.++||.+.+. ++.+|+++...+|++
T Consensus 277 l~~~~~~~~~~~~~~~~s~~v~~v~~~~g~-----------~~~~v~~~L~~~gI~i~~~~~~l~~~~vRis~~~~~t~~ 345 (361)
T TIGR01366 277 AQERPYATPFVTDPGKRSQVVGTIDFVDDI-----------DAATVAKILRANGIVDTEPYRKLGRNQLRVAMFPAIDPD 345 (361)
T ss_pred HHhCCCcccCCCChhhcccceEEEECCCcc-----------CHHHHHHHHHHCCCeeccCccccCCCcEEEEcCCCCCHH
Confidence 87773221 211110 11122234443211 1445788888999998754 246999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 013204 421 EVDELISKYGKALKA 435 (447)
Q Consensus 421 ~i~~~~~~l~~~l~~ 435 (447)
||++++++|++++++
T Consensus 346 di~~l~~al~~~~~~ 360 (361)
T TIGR01366 346 DVEALTECVDWVVER 360 (361)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998765
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-13 Score=133.18 Aligned_cols=234 Identities=12% Similarity=0.106 Sum_probs=142.6
Q ss_pred ChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh---hcccCCcc
Q 013204 76 TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA---ASLSGLPA 152 (447)
Q Consensus 76 ~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~---~~~~~~~~ 152 (447)
++....|+++++++. +.+.+++++||++|+..++..+. ..+++||+.++.|++..... ....+..
T Consensus 49 nPt~~~lE~~lA~l~---g~~~~~~~~sG~~Ai~~al~all--------~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~- 116 (377)
T TIGR01324 49 TLTHFALQDAMCELE---GGAGCYLYPSGLAAVTNSILAFV--------KAGDHVLMVDSAYEPTRYFCDIVLKRMGVD- 116 (377)
T ss_pred CccHHHHHHHHHHHh---CCCcEEEECcHHHHHHHHHHHhc--------CCCCEEEEcCCCcHHHHHHHHHHHHhcCcE-
Confidence 455678999999885 34579999999999999998653 33578888899998764321 1111110
Q ss_pred ccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHH
Q 013204 153 LHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQA 232 (447)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~ 232 (447)
+..++.. . .+.+++.+. +++++|++|.+.+..|.+.+ +++|++
T Consensus 117 -----------v~~~d~~----------~--------~e~l~~~i~----~~tklV~lesp~Np~g~~~d----l~~I~~ 159 (377)
T TIGR01324 117 -----------ITYYDPL----------I--------GEDIATLIQ----PNTKVLFLEAPSSITFEIQD----IPAIAK 159 (377)
T ss_pred -----------EEEECCC----------C--------HHHHHHhcC----CCceEEEEECCCCCCCcHHH----HHHHHH
Confidence 0111100 0 145565553 35678888887777776655 999999
Q ss_pred HHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeee--cccCCCc-ccceeEEEeChhHHHHhhhccCCCCccCcCC
Q 013204 233 VVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF--AKALSSA-YMPIGAILVSPEVSEVIHSQSNTLGSFSHGF 309 (447)
Q Consensus 233 l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~--sK~l~gg-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (447)
+|++||+++|+|++|+ .|....+ ....+|+++. +|.++|. ..-.|+++++++.++.+... ....
T Consensus 160 la~~~g~~livD~t~a-~g~~~~p-----l~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~-------~~~~ 226 (377)
T TIGR01324 160 AARNPGIVIMIDNTWA-AGLLFKP-----LEHGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREH-------SYLM 226 (377)
T ss_pred HHHHcCCEEEEECCCc-cccccCc-----cccCceEEEecCceeccCCCCceEEEEEeCHHHHHHHHHH-------HHHh
Confidence 9999999999999997 3333222 2234688765 7999863 13467788888876665421 1112
Q ss_pred CCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhcc-----CCCcee----------eEeeeeeEEEEEeec
Q 013204 310 TYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFS-----DSPIIG----------EIRGTGLILGTEFAD 373 (447)
Q Consensus 310 t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~~~----------~~~~~g~~~~i~~~~ 373 (447)
....+|..+...+..++.+. -..++..++..++.+.|++.+ .+|... ...+.|.++.+.+..
T Consensus 227 G~~l~p~~a~~~~rgl~tl~--~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~ 303 (377)
T TIGR01324 227 GQMVDADDAYTTLRGLRTLG--VRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQR 303 (377)
T ss_pred CCCCCHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECC
Confidence 23445665555555555332 124455555556666665431 112111 123567788888853
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.2e-12 Score=122.60 Aligned_cols=312 Identities=13% Similarity=0.071 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEE
Q 013204 52 PRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFI 131 (447)
Q Consensus 52 p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi 131 (447)
++..+++.+.+..+... +..+...++++.+++.+ +.+++++++||++|+..+++.+ +-.+++.||
T Consensus 11 ~~e~~a~~~~~~~~~~~-----~~g~~~~~~e~~la~~~---g~~~~v~~~sgt~aL~~~l~al-------~~~pGd~Vi 75 (376)
T TIGR02379 11 GQELEYIAEAISEGKLS-----GDGPFSRRCETWLENRT---GTKKALLTPSCTAALEMAALLL-------DIQPGDEVI 75 (376)
T ss_pred HHHHHHHHHHHHcCCcc-----CCcHHHHHHHHHHHHHh---CCCeEEEeCCHHHHHHHHHHHc-------CCCCcCEEE
Confidence 55677888877654221 13456788889988886 5568999999999999888764 113457899
Q ss_pred EEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEc
Q 013204 132 ARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAE 211 (447)
Q Consensus 132 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~e 211 (447)
+..+.|.+........+..+. .++.... .-+ .+++++++.+. + ++++|+
T Consensus 76 v~~~t~~~~~~~~~~~G~~~v-------------~vd~d~~------~~~------~d~~~le~~i~---~-~tk~Ii-- 124 (376)
T TIGR02379 76 MPSYTFVSTANAFVLRGAKIV-------------FVDIRPD------TMN------IDETLIESAIT---H-RTKAIV-- 124 (376)
T ss_pred ECCCCcHHHHHHHHHcCCEEE-------------EEecCCC------cCC------CCHHHHHHhcC---c-CceEEE--
Confidence 988888776544433222211 1221110 000 01366776664 2 455555
Q ss_pred cccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec----ccCCCcccceeEEEe
Q 013204 212 PVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA----KALSSAYMPIGAILV 287 (447)
Q Consensus 212 pv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s----K~l~gg~~~~g~~~~ 287 (447)
|++. .|...+ +++|.++|++||+++|.|++|+ +|.. +.....+...|+.+|| |.++.| .+.|+++.
T Consensus 125 p~~~-~G~~~d----~~~I~~la~~~~i~vIeDaa~~-~g~~---~~~~~~g~~~~~~~fSf~~~K~l~~g-~~gG~v~~ 194 (376)
T TIGR02379 125 PVHY-AGVACD----MDTIMALANKHQLFVIEDAAQG-VMST---YKGRALGSIGHLGTFSFHETKNYTSG-GEGGALLI 194 (376)
T ss_pred EeCC-CCCccC----HHHHHHHHHHCCCEEEEECccc-cCCc---cCCcccCCCCCEEEEeCCCCCcCccc-CCceEEEE
Confidence 4444 344554 8999999999999999999997 4321 1111223335788888 888766 36677766
Q ss_pred C-hhHHHHhhhccCCCC---c-----------cCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhcc
Q 013204 288 S-PEVSEVIHSQSNTLG---S-----------FSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFS 352 (447)
Q Consensus 288 ~-~~~~~~~~~~~~~~~---~-----------~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~ 352 (447)
+ +++.+.+......-. . ...+..+-.+.+.++.+++.|+.++ +..++.+++.++..+.|+.+.
T Consensus 195 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l~--~~~~~r~~~~~~y~~~L~~~~ 272 (376)
T TIGR02379 195 NDQAFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQAD--RINQDRLATWQLYQDALKPLE 272 (376)
T ss_pred CCHHHHHHHHHHHHhCCCCccccccCCCcceeeeecccCCccHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHhccCC
Confidence 5 777776653211000 0 0012233344555555666666543 344555556666666665542
Q ss_pred C-----CCc-eeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee--------------------
Q 013204 353 D-----SPI-IGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-------------------- 405 (447)
Q Consensus 353 ~-----~~~-~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------------------- 405 (447)
. .+. .... +... ++.+.+.... ....+.+.|.++||.+...
T Consensus 273 ~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~-----------~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~ 340 (376)
T TIGR02379 273 EKGIIELPSIPNGCQHNAH-MFYIKLKDED-----------DRNELIKYLKEQEIMAVFHYVPLHSSPAGRYFGRFHGED 340 (376)
T ss_pred cCCeeeCCCCCCCCeeeeE-EEEEEECCcC-----------CHHHHHHHHHHCCCCccccCcCCCcchhHHhhCCCCCCC
Confidence 1 111 1011 1111 2234443211 1456888999999986621
Q ss_pred -------CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 406 -------GDNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 406 -------g~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
.+.+.+-.+...+++|++++++.|++++
T Consensus 341 p~~~~~~~~~l~LP~~~~l~~~~~~~i~~~i~~~~ 375 (376)
T TIGR02379 341 IYTTKESERLVRLPLYYGLSKEDQARVIQTICDYL 375 (376)
T ss_pred hHHHHHHhceEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 0235555556689999999999998764
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-13 Score=133.48 Aligned_cols=234 Identities=17% Similarity=0.158 Sum_probs=137.9
Q ss_pred CCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccc
Q 013204 74 RTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPAL 153 (447)
Q Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 153 (447)
.+.+...+|+++++++. +.+..++++||++|+..++.++ ..+++||+.++.|++.........
T Consensus 49 ~~~pt~~~le~~la~l~---g~~~~~~~~sG~~ai~~~~~ll---------~~Gd~Vl~~~~~y~~t~~~~~~~~----- 111 (366)
T PRK08247 49 TGNPTRGVLEQAIADLE---GGDQGFACSSGMAAIQLVMSLF---------RSGDELIVSSDLYGGTYRLFEEHW----- 111 (366)
T ss_pred CCCchHHHHHHHHHHHh---CCCcEEEEcCHHHHHHHHHHHh---------CCCCEEEEecCCcCcHHHHHHHHh-----
Confidence 35566888999999986 3345688999999998776433 234789999999987532111100
Q ss_pred cCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHH
Q 013204 154 HQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAV 233 (447)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l 233 (447)
..++. .+..++.. +++++++.+. + ++++|++|..++..+.. ..+++|.++
T Consensus 112 -~~~G~---~v~~vd~~------------------d~~~l~~~i~---~-~tklv~le~P~NP~~~~----~dl~~I~~l 161 (366)
T PRK08247 112 -KKWNV---RFVYVNTA------------------SLKAIEQAIT---P-NTKAIFIETPTNPLMQE----TDIAAIAKI 161 (366)
T ss_pred -hccCc---eEEEECCC------------------CHHHHHHhcc---c-CceEEEEECCCCCCCcH----HHHHHHHHH
Confidence 00010 01112211 1366776664 2 45666766555444433 449999999
Q ss_pred HHhcCCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCc-ccceeEEEeC-hhHHHHhhhccCCCCccCcCC
Q 013204 234 VKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSA-YMPIGAILVS-PEVSEVIHSQSNTLGSFSHGF 309 (447)
Q Consensus 234 ~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg-~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~ 309 (447)
|++||+++|+||+|.. +....+ .....|++ +++|.++|. ....|+++++ +++.+.+... ....
T Consensus 162 a~~~g~~lIvD~t~~~-~~~~~p-----~~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~-------~~~~ 228 (366)
T PRK08247 162 AKKHGLLLIVDNTFYT-PVLQRP-----LEEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYY-------QNAA 228 (366)
T ss_pred HHHcCCEEEEECCCcc-ccccCc-----hhcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHH-------HHhc
Confidence 9999999999999841 111111 11235665 478998862 2356778876 5676666421 1112
Q ss_pred CCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceee--EeeeeeEEEEEee
Q 013204 310 TYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGE--IRGTGLILGTEFA 372 (447)
Q Consensus 310 t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~--~~~~g~~~~i~~~ 372 (447)
....+|..+..+...++.+. ...++.+++.+.+.+.|++. +.+.. .++.|.++.+.+.
T Consensus 229 g~~~s~~~a~l~~~~l~tl~--~r~~~~~~~a~~l~~~L~~~---p~v~~v~~P~~gg~~sf~~~ 288 (366)
T PRK08247 229 GAVLSPFDSWLLIRGMKTLA--LRMRQHEENAKAIAAFLNEQ---PGVTDVLYPGRGGMLSFRLQ 288 (366)
T ss_pred CCCCChHHHHHHHhccCcHH--HHHHHHHHHHHHHHHHHHhC---CCeeEEecCCcCcEEEEEEC
Confidence 33456666666666565332 23345566667777777654 33322 3446888877764
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=8e-13 Score=127.99 Aligned_cols=273 Identities=16% Similarity=0.123 Sum_probs=162.6
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhh---cccCCc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAA---SLSGLP 151 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~---~~~~~~ 151 (447)
+.+...+|+++++++. . +++++++||++|+..++.... ..+++||+.++.|++...... ...|..
T Consensus 49 ~~p~~~~Le~~lA~l~---~-~~~v~~~sG~~Ai~~~l~all--------~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~ 116 (366)
T PRK07582 49 SNPTWRALEAALGELE---G-AEALVFPSGMAAITAVLRALL--------RPGDTVVVPADGYYQVRALAREYLAPLGVT 116 (366)
T ss_pred CCccHHHHHHHHHHHc---C-CCEEEECCHHHHHHHHHHHhc--------CCCCEEEEeCCCcHhHHHHHHHHHhcCeEE
Confidence 5667888999999885 2 357778889999998887543 334789999999988754321 111111
Q ss_pred cccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHH
Q 013204 152 ALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 231 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~ 231 (447)
+..++..+ +.+. +. +++.+|++|..++.+|.+.+ +++|.
T Consensus 117 ------------v~~v~~~~--------------------~~~~-~~----~~t~lV~le~p~NPtg~v~d----i~~I~ 155 (366)
T PRK07582 117 ------------VREAPTAG--------------------MAEA-AL----AGADLVLAETPSNPGLDVCD----LAALA 155 (366)
T ss_pred ------------EEEECCCC--------------------hHHH-hc----cCceEEEEECCCCCCCCccC----HHHHH
Confidence 11122110 0111 11 24567777777766776655 99999
Q ss_pred HHHHhcCCEEEEehhhc-CCCccccccccccCCCCCCeee--ecccCCC-cccceeEEEeC-hhHHHHhhhccCCCCccC
Q 013204 232 AVVKKYDILFIADEVIC-AFGRLGTMFGCDKYSIKPDLVS--FAKALSS-AYMPIGAILVS-PEVSEVIHSQSNTLGSFS 306 (447)
Q Consensus 232 ~l~~~~g~~li~DEv~~-g~g~~g~~~~~~~~~~~~d~v~--~sK~l~g-g~~~~g~~~~~-~~~~~~~~~~~~~~~~~~ 306 (447)
++|+++|+++++||+|. .++.. + ....+|+++ ++|.++| +..++|+++++ +++.+.+... .
T Consensus 156 ~~a~~~g~~lvVD~t~~~~~~~~--p-----~~~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~-------~ 221 (366)
T PRK07582 156 AAAHAAGALLVVDNTTATPLGQR--P-----LELGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERW-------R 221 (366)
T ss_pred HHHHHcCCEEEEECCCCCccccC--c-----hhcCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHH-------H
Confidence 99999999999999984 22211 1 123357775 5799876 33678988874 6777766531 1
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCC-----Cceee----------EeeeeeEEEEEe
Q 013204 307 HGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-----PIIGE----------IRGTGLILGTEF 371 (447)
Q Consensus 307 ~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~-----~~~~~----------~~~~g~~~~i~~ 371 (447)
.......+|+.+..+...++.+ +-..++..++...+.+.|++.+.. |.... ..+.|.++.+.+
T Consensus 222 ~~~g~~~~~~~a~l~~r~l~tl--~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~ 299 (366)
T PRK07582 222 LLAGAIPGPFEAWLAHRSLGTL--GLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFEL 299 (366)
T ss_pred HHhCCCCCHHHHHHHHhccccH--HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEe
Confidence 1112344677666555555532 223466667777788777765322 21111 124688888888
Q ss_pred ecCCCCCCCCCCCcchHHHHHHHHHHcCceEEe--------------------eCCEEEEecCCCCCHHHHHHHHHHHH
Q 013204 372 ADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV--------------------SGDNIMMSPPFIMSPEEVDELISKYG 430 (447)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~--------------------~g~~iR~~~~~~~t~e~i~~~~~~l~ 430 (447)
.+. ....+.+.+.+++... ..+.||++..+-.+++.|+.+.++|+
T Consensus 300 ~~~--------------~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~liR~svGlE~~~dli~dl~~al~ 364 (366)
T PRK07582 300 ADA--------------AAAERFVAASRLVVAATSFGGVHTSADRRARWGDAVPEGFVRLSCGIEDTDDLVADLERALD 364 (366)
T ss_pred CCH--------------HHHHHHHHhCCcceecccCCCccchhhhHHHcCCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Confidence 521 1233444444444320 01469999777666666666655554
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.6e-13 Score=132.67 Aligned_cols=237 Identities=13% Similarity=0.115 Sum_probs=143.4
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 154 (447)
+.+...++++++++++ +.+....++||+.|+..++.... ..+++|++..+.|.+......... .
T Consensus 63 ~~p~~~~Le~~lA~l~---G~~~~~~~~sG~~Ai~~~l~~~l--------~~Gd~Vl~~~~~y~~~~~~~~~~~--~--- 126 (398)
T PRK07504 63 SNPTVDMFEKRMCALE---GAEDARATASGMAAVTAAILCQV--------KAGDHVVAARALFGSCRYVVETLL--P--- 126 (398)
T ss_pred CCchHHHHHHHHHHHh---CCCeeeEecCHHHHHHHHHHHHh--------CCCCEEEEcCCchhHHHHHHHHHH--h---
Confidence 4556788999999886 34456678899999988776443 234788888888877532211100 0
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
.++. .+..++.. +++++++.+. +++++|++|.+++..|.+.+ +++|.++|
T Consensus 127 -~~G~---~v~~vd~~------------------d~e~l~~ai~----~~tklV~lesp~NptG~v~d----l~~I~~la 176 (398)
T PRK07504 127 -RYGI---ESTLVDGL------------------DLDNWEKAVR----PNTKVFFLESPTNPTLEVID----IAAVAKIA 176 (398)
T ss_pred -hcCe---EEEEECCC------------------CHHHHHHhcC----cCceEEEEECCCCCCcEecC----HHHHHHHH
Confidence 0000 01111110 1366666654 34667888877777777766 99999999
Q ss_pred HhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCccccee-EEEeChhHHH-HhhhccCCCCccCcCCC
Q 013204 235 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSAYMPIG-AILVSPEVSE-VIHSQSNTLGSFSHGFT 310 (447)
Q Consensus 235 ~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg~~~~g-~~~~~~~~~~-~~~~~~~~~~~~~~~~t 310 (447)
+++|+++|+||+|+.. ....+ .....|+++ ++|.++|.+.++| +++++++.+. .+... .....
T Consensus 177 ~~~gi~lvvD~a~a~~-~~~~~-----~~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~-------~~~~g 243 (398)
T PRK07504 177 NQAGAKLVVDNVFATP-LFQKP-----LELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDY-------FRHTG 243 (398)
T ss_pred HHcCCEEEEECCcccc-ccCCc-----hhhCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHH-------HHHhC
Confidence 9999999999998722 21111 122367775 5799987547775 5666776554 23210 01112
Q ss_pred CCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccC-----CCcee----------eEeeeeeEEEEEee
Q 013204 311 YSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD-----SPIIG----------EIRGTGLILGTEFA 372 (447)
Q Consensus 311 ~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~-----~~~~~----------~~~~~g~~~~i~~~ 372 (447)
...+|+.++.++..|+.+. ...++..++.+++.+.|++.+. +|... ..+|.|.++.+++.
T Consensus 244 ~~~s~~~A~~~l~~L~tl~--~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~ 318 (398)
T PRK07504 244 PSLSPFNAWTLLKGLETLP--VRVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELK 318 (398)
T ss_pred CCCCHHHHHHHHhccchHH--HHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeC
Confidence 3457777777777777543 2345555677777777765421 22111 12355888888885
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.8e-13 Score=132.51 Aligned_cols=235 Identities=14% Similarity=0.118 Sum_probs=142.3
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh---hcccCCc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA---ASLSGLP 151 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~---~~~~~~~ 151 (447)
..+...++++.++++. +.+.+++++||+.|+..++.... ..+++||+....|.+..... +...|..
T Consensus 68 ~~p~~~~le~~lA~l~---g~~~al~~~sG~~Ai~~~l~all--------~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~ 136 (403)
T PRK07810 68 GNPTVSMFEERLRLIE---GAEACFATASGMSAVFTALGALL--------GAGDRLVAARSLFGSCFVVCNEILPRWGVE 136 (403)
T ss_pred CCchHHHHHHHHHHHh---CCCcEEEECChHHHHHHHHHHHh--------CCCCEEEEccCCcchHHHHHHHHHHHcCcE
Confidence 4556788999999986 34578999999999999887653 33467777665554432111 1111111
Q ss_pred cccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHH
Q 013204 152 ALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 231 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~ 231 (447)
+..++.. +++++++.+. +++++|++|.+.+..|.+.+ +++|.
T Consensus 137 ------------v~~vd~~------------------d~~~l~~ai~----~~tklV~~esp~Nptg~v~d----l~~I~ 178 (403)
T PRK07810 137 ------------TVFVDGE------------------DLSQWEEALS----VPTQAVFFETPSNPMQSLVD----IAAVS 178 (403)
T ss_pred ------------EEEECCC------------------CHHHHHHhcC----cCceEEEEECCCCCCCeecC----HHHHH
Confidence 1111111 1366777664 24678888887777777766 99999
Q ss_pred HHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCcccce-eEEEeChhHHH-HhhhccCCCCccCc
Q 013204 232 AVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSAYMPI-GAILVSPEVSE-VIHSQSNTLGSFSH 307 (447)
Q Consensus 232 ~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg~~~~-g~~~~~~~~~~-~~~~~~~~~~~~~~ 307 (447)
++|+++|+++|+||++. .+....+ . ....|+++ ++|.++|.+..+ |+++++++.+. .+... ..
T Consensus 179 ~la~~~g~~vivD~a~a-~~~~~~~--~---~~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~-------~~ 245 (403)
T PRK07810 179 ELAHAAGAKVVLDNVFA-TPLLQRG--L---PLGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKL-------MR 245 (403)
T ss_pred HHHHHcCCEEEEECCCC-ccccCCh--h---hcCCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHH-------HH
Confidence 99999999999999986 2222111 1 12358776 469898733455 67777777544 23210 11
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCC-----Cceee----------EeeeeeEEEEEee
Q 013204 308 GFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-----PIIGE----------IRGTGLILGTEFA 372 (447)
Q Consensus 308 ~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~-----~~~~~----------~~~~g~~~~i~~~ 372 (447)
......+|..++.++..|+.+. ...++..++..++.+.|++.+.. |.... ..+.|.++.+.+.
T Consensus 246 ~~g~~~s~~~a~l~l~~L~tl~--~R~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~ 323 (403)
T PRK07810 246 HTGPALSAFNAWVLLKGLETLA--LRVRHSNASALRIAEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELD 323 (403)
T ss_pred HhCCCCCHHHHHHHHhccCcHH--HHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEc
Confidence 1123457777777777776442 23455566666666666654221 11111 1266888888886
Q ss_pred c
Q 013204 373 D 373 (447)
Q Consensus 373 ~ 373 (447)
.
T Consensus 324 ~ 324 (403)
T PRK07810 324 A 324 (403)
T ss_pred C
Confidence 4
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.9e-12 Score=122.76 Aligned_cols=314 Identities=14% Similarity=0.170 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEE
Q 013204 52 PRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFI 131 (447)
Q Consensus 52 p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi 131 (447)
++-.+++.+.+...... ..+...++++++++++ +.+.+++++||++|+..+++.+ +-..+++||
T Consensus 14 ~~e~~~~~~~l~~~~~~------~g~~~~~le~~la~~~---g~~~~v~~~sgt~al~lal~al-------~~~~Gd~Vi 77 (379)
T PRK11658 14 DEELAAVKEVLRSGWIT------TGPKNQALEQAFCQLT---GNQHAIAVSSATAGMHITLMAL-------GIGPGDEVI 77 (379)
T ss_pred HHHHHHHHHHHHcCCcc------CCHhHHHHHHHHHHHh---CCCeEEEECCHHHHHHHHHHHc-------CCCCCCEEE
Confidence 55677777777654321 2345788999999987 3457899999999999999865 113357899
Q ss_pred EEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEc
Q 013204 132 ARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAE 211 (447)
Q Consensus 132 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~e 211 (447)
+..+.|.+........+..+ ..++.... .. ..+++++++.+. + ++++|+
T Consensus 78 v~~~~~~~~~~~~~~~G~~~-------------v~vd~~~~------~~------~~d~~~l~~~i~---~-~tkav~-- 126 (379)
T PRK11658 78 TPSLTWVSTLNMIVLLGATP-------------VMVDVDRD------TL------MVTPEAIEAAIT---P-RTKAII-- 126 (379)
T ss_pred ECCCcHHHHHHHHHHcCCEE-------------EEEecCCC------cC------CcCHHHHHHhcc---c-CCeEEE--
Confidence 98888877654333222111 11221100 00 001366777664 2 345555
Q ss_pred cccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-CCCccccccccccCCCCCCeeeec--ccCCCcccceeEEEe-
Q 013204 212 PVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-AFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMPIGAILV- 287 (447)
Q Consensus 212 pv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-g~g~~g~~~~~~~~~~~~d~v~~s--K~l~gg~~~~g~~~~- 287 (447)
|++. .|...+ +++|.++|++||+++|.|++|+ |....|.. ...++. ++.+|+ |.+++| ..|+++.
T Consensus 127 ~~~~-~G~~~d----~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~--~g~~g~--~~~Sf~~~K~l~~g--~GG~v~~~ 195 (379)
T PRK11658 127 PVHY-AGAPAD----LDAIRAIGERYGIPVIEDAAHAVGTYYKGRH--IGARGT--AIFSFHAIKNITCA--EGGLVVTD 195 (379)
T ss_pred EeCC-CCCcCC----HHHHHHHHHHcCCeEEEECCCccCCeECCee--cCCCCC--EEEeCCCCCcCccc--CceEEEEC
Confidence 3433 455544 8999999999999999999997 32222211 112232 566665 677764 5566666
Q ss_pred ChhHHHHhhhccCC---CCc--------------cCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhh
Q 013204 288 SPEVSEVIHSQSNT---LGS--------------FSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA 350 (447)
Q Consensus 288 ~~~~~~~~~~~~~~---~~~--------------~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~ 350 (447)
++++.+.++..... ... +..+..+..+.+.++.++..++.+ ++..++.+++.+++++.|++
T Consensus 196 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~l--~~~~~~r~~~a~~~~~~L~~ 273 (379)
T PRK11658 196 DDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQLAKL--EALNARRREIAARYLQALAD 273 (379)
T ss_pred CHHHHHHHHHHHHcCCCcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcC
Confidence 46776665432100 000 001112223334444444444332 44567777777788888876
Q ss_pred ccCCCceeeE-eeee--eEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee----------------------
Q 013204 351 FSDSPIIGEI-RGTG--LILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS---------------------- 405 (447)
Q Consensus 351 l~~~~~~~~~-~~~g--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---------------------- 405 (447)
+....+.... .... .++.+.+....... ....+.+.|.++||-+...
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~r~~~~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~ 345 (379)
T PRK11658 274 LPFQPLSLPAWPHQHAWHLFIIRVDEERCGI--------SRDALMEALKERGIGTGLHFRAAHTQKYYRERFPTLSLPNT 345 (379)
T ss_pred CCCccCcCCCCCCceeEEEEEEEECCccccC--------CHHHHHHHHHHCCCCCcccCcCcccChhhhccCCCCCChHH
Confidence 5211111100 0111 12233332211000 1456888899999875510
Q ss_pred ----CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 406 ----GDNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 406 ----g~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
...+.+-.+...|+++++++++.|++++
T Consensus 346 ~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~ 377 (379)
T PRK11658 346 EWNSERICSLPLFPDMTDADVDRVITALQQIA 377 (379)
T ss_pred HHHHhCeEEccCCCCCCHHHHHHHHHHHHHHH
Confidence 0335555556689999999999998865
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.9e-13 Score=131.50 Aligned_cols=235 Identities=15% Similarity=0.158 Sum_probs=141.0
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh--h-cccCCc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA--A-SLSGLP 151 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~--~-~~~~~~ 151 (447)
..+...+|+++++++.. .+..++++||++|+..++.... ..+++|++..+.|++..... . ...+..
T Consensus 58 ~~p~~~~Le~~lA~l~g---~~~~v~~~sG~~Ai~~~l~all--------~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~ 126 (405)
T PRK08776 58 GNPTRDLLGEALAELEG---GAGGVITATGMGAINLVLNALL--------QPGDTLVVPHDAYGGSWRLFNALAKKGHFA 126 (405)
T ss_pred CChHHHHHHHHHHHHhC---CCceEEEcCHHHHHHHHHHHHh--------CCCCEEEEccCCchHHHHHHHHHHHhcCcE
Confidence 45566789999998853 2356778889999988887653 33477888899998743211 1 111110
Q ss_pred cccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHH
Q 013204 152 ALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 231 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~ 231 (447)
+..++.. +.+++++.+. + ++++|+++..++..|.+.. +++|.
T Consensus 127 ------------v~~v~~~------------------d~~~l~~~i~---~-~tklV~l~~P~NPtG~v~d----l~~I~ 168 (405)
T PRK08776 127 ------------LITADLT------------------DPRSLADALA---Q-SPKLVLIETPSNPLLRITD----LRFVI 168 (405)
T ss_pred ------------EEEECCC------------------CHHHHHHhcC---c-CCeEEEEECCCCCCCccCC----HHHHH
Confidence 1111111 1266666664 2 4556666666555666644 99999
Q ss_pred HHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeee--cccCCCc-ccceeEEEe-ChhHHHHhhhccCCCCccCc
Q 013204 232 AVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF--AKALSSA-YMPIGAILV-SPEVSEVIHSQSNTLGSFSH 307 (447)
Q Consensus 232 ~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~--sK~l~gg-~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~ 307 (447)
++|++||+++|+||+|..... -.+. ....|++++ +|.++|. ....|+++. ++++.+.+... ..
T Consensus 169 ~la~~~gi~vIvD~a~a~~~~-~~pl-----~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~-------~~ 235 (405)
T PRK08776 169 EAAHKVGALTVVDNTFLSPAL-QKPL-----EFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWW-------AN 235 (405)
T ss_pred HHHHHcCCEEEEECCCccccc-CCcc-----cccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHH-------HH
Confidence 999999999999999863211 1111 123577765 5988763 234677666 56676666421 11
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccC-----CCcee----------eEeeeeeEEEEEee
Q 013204 308 GFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD-----SPIIG----------EIRGTGLILGTEFA 372 (447)
Q Consensus 308 ~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~-----~~~~~----------~~~~~g~~~~i~~~ 372 (447)
...+..+|+.+..+...++.+ +...++..++...+.+.|++.+. +|... ...|.|.++.+++.
T Consensus 236 ~~g~~~s~~~a~l~~~gl~tl--~~r~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~ 313 (405)
T PRK08776 236 ALGLTGSPFDAFLTLRGLRTL--DARLRVHQENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELE 313 (405)
T ss_pred hcCCCCCHHHHHHHHhhhCcH--HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEc
Confidence 112346788887777666644 23456666677777777765421 12111 12467888888885
Q ss_pred c
Q 013204 373 D 373 (447)
Q Consensus 373 ~ 373 (447)
.
T Consensus 314 ~ 314 (405)
T PRK08776 314 G 314 (405)
T ss_pred C
Confidence 3
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-12 Score=115.04 Aligned_cols=289 Identities=13% Similarity=0.106 Sum_probs=170.2
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcc
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYW 173 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
...-.++..||+.+.|.|+-... .+.++|+++..+--|.....+... .++.+ +.+.. .+
T Consensus 67 n~~tf~isgsGh~g~E~al~N~l--------ePgd~vLv~~~G~wg~ra~D~~~r------~ga~V-----~~v~~--~~ 125 (385)
T KOG2862|consen 67 NAQTFVISGSGHSGWEAALVNLL--------EPGDNVLVVSTGTWGQRAADCARR------YGAEV-----DVVEA--DI 125 (385)
T ss_pred CCceEEEecCCcchHHHHHHhhc--------CCCCeEEEEEechHHHHHHHHHHh------hCcee-----eEEec--Cc
Confidence 34467788899999999988553 234667776554444432222211 11110 01110 00
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcc
Q 013204 174 RYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRL 253 (447)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~ 253 (447)
+. ...++++++.+..+ ++.+|.+....+++|...+ .++...++|++|++++++|.|-+ +|
T Consensus 126 -----G~------~~~le~i~~~lsqh---~p~~vfv~hgdsSTgV~q~---~~~~~g~lc~k~~~lllVD~VaS-lg-- 185 (385)
T KOG2862|consen 126 -----GQ------AVPLEEITEKLSQH---KPKAVFVTHGDSSTGVLQD---LLAISGELCHKHEALLLVDTVAS-LG-- 185 (385)
T ss_pred -----cc------CccHHHHHHHHHhc---CCceEEEEecCccccccch---HHHHHHHHhhcCCeEEEEechhh-cC--
Confidence 00 11147788888764 3467777777777777654 37778899999999999999987 54
Q ss_pred ccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCc----CCCC-----------CCcHH-H
Q 013204 254 GTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSH----GFTY-----------SGHPV-S 317 (447)
Q Consensus 254 g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~t~-----------~~~~~-~ 317 (447)
|..|.++.+|+..-+..-.|+++++ .+++.+..++..++.++.+..++..+.. ..+| ...|+ .
T Consensus 186 gt~F~mDewgVDvaytgSQKaL~aP-~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~l 264 (385)
T KOG2862|consen 186 GTEFEMDEWGVDVAYTGSQKALGAP-AGLSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQL 264 (385)
T ss_pred CccceehhhcccEEEecchhhcCCC-CCcceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHH
Confidence 4477778877643333456999987 6888889999998888765432221110 0011 11233 3
Q ss_pred HHHHHHHHHHHhhhc---HHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHH
Q 013204 318 CAVAIEALKIYKERN---IVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGA 393 (447)
Q Consensus 318 ~~aa~a~l~~~~~~~---~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 393 (447)
.-+..++|+.+-+++ ..++-++++++++..|+++ -+.-...+....-....+..+... ...++..
T Consensus 265 ly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~GLq~fv~~e~~rlptvttv~vp~gv-----------Dw~dVv~ 333 (385)
T KOG2862|consen 265 LYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEALGLQLFVVDEELRLPTVTTVKVPYGV-----------DWKDVVA 333 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceecChhhccCcceeeecCCCC-----------CHHHHHH
Confidence 334446676665544 4566677888898888886 111111111111222222222111 1345777
Q ss_pred HHHHcCceEEee------CCEEEEecCC-CCCHHHHHHHHHHHHHHHHH
Q 013204 394 QCEKHGMLVRVS------GDNIMMSPPF-IMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 394 ~l~~~Gi~~~~~------g~~iR~~~~~-~~t~e~i~~~~~~l~~~l~~ 435 (447)
++.+++.+...+ |..+||...- +.+-|.|+..++.|+.++.+
T Consensus 334 ~~~~~~~vei~gglg~~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~ 382 (385)
T KOG2862|consen 334 YAMSHYVVEIGGGLGPTVGKVFRIGLLGCNANVEYIDNVVELLKLALQR 382 (385)
T ss_pred HHHHhcCEEeccccCCCcccEEEEEEeeccCCcHHHHHHHHHHHHHHhh
Confidence 877775443332 3679998542 34788899999888888765
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.5e-13 Score=127.35 Aligned_cols=320 Identities=12% Similarity=0.034 Sum_probs=185.3
Q ss_pred CCHHHHHHHHHHHhcC----CcccccCcCCC---hHHHHHHHHHHHhcCcCCCCeEEEe-CChhhHHHHHHHHHHHHHHh
Q 013204 50 SEPRLVAAATAQLNTL----PFYHSFWNRTT---KPSLDLAKELLEMFTASKMAKVFFT-NSGSEANDTQVKLVWYYNNA 121 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~----~~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~~v~~~-~sGseA~~~Al~~~~~~~~~ 121 (447)
-+++|++|+.+.+.+. ...+....... +...+..+.+++++......+++|+ .||+.|+|+++....
T Consensus 14 ~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~----- 88 (360)
T PRK05355 14 LPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLL----- 88 (360)
T ss_pred CCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcC-----
Confidence 5799999999887432 01111111122 4566777888888742122345555 799999999988653
Q ss_pred cCCCCcceEEEEcCCCccchhhhhccc-CCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHH-HHHh
Q 013204 122 LGRPNKKKFIARQKSYHGSTLIAASLS-GLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLED-LILK 199 (447)
Q Consensus 122 ~~~~~~~~vi~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~-~l~~ 199 (447)
...++++++..+..|.....+... |... .+..+..+. .+ . ..++++ .+.
T Consensus 89 ---~~g~~~l~i~~G~fg~r~~~~a~~~g~~~-------------~~~~~~~~g--~~-~---------~~~~~~~~l~- 139 (360)
T PRK05355 89 ---GGGKKADYVDTGSWSKKAIKEAKKYGEVN-------------VAASSEDDG--FT-Y---------IPPLDEWQLS- 139 (360)
T ss_pred ---CCCCeEEEEECCHHHHHHHHHHHHhCCce-------------EEecccccC--CC-C---------CCChhhccCC-
Confidence 223566766666666644332211 1110 011100000 00 0 012222 332
Q ss_pred hCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec--ccCCC
Q 013204 200 EGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSS 277 (447)
Q Consensus 200 ~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l~g 277 (447)
+ ++.+|.+..+-.++|...++ +++| ||+++++|-+++ +|.. +...+.+ |++++| |.++
T Consensus 140 --~-~~~~V~~th~eTstGv~~~~---i~~i------~g~l~vVDavss-~g~~--~idv~~~----d~~~~ssqK~lg- 199 (360)
T PRK05355 140 --D-DAAYVHYTSNETIDGTEFHE---LPDT------GDVPLVADMSSD-ILSR--PIDVSKF----GLIYAGAQKNIG- 199 (360)
T ss_pred --C-CCCEEEEccCCCcceEecCc---cccc------CCCcEEEEcCcc-ccCc--cCCHHHc----cEEEEecccccc-
Confidence 2 35567777776777777532 4444 899999999998 4322 2222322 577765 8884
Q ss_pred cccceeEEEeChhHHHHhhhccCCC---C--ccCcCCCCCCcHHHHHHHHHHHHHHhhh-c---HHHHHHHHHHHHHHhH
Q 013204 278 AYMPIGAILVSPEVSEVIHSQSNTL---G--SFSHGFTYSGHPVSCAVAIEALKIYKER-N---IVEQVNKIAPKFQDGV 348 (447)
Q Consensus 278 g~~~~g~~~~~~~~~~~~~~~~~~~---~--~~~~~~t~~~~~~~~~aa~a~l~~~~~~-~---~~~~~~~~~~~l~~~L 348 (447)
+ .++|+++.++++.+.+....... . .......++++...+.+..++|+.+.+. + ..++.+++.+++++.|
T Consensus 200 P-~Glg~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l 278 (360)
T PRK05355 200 P-AGLTIVIVREDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAI 278 (360)
T ss_pred C-CceEEEEECHHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence 5 67999999999887765310000 0 0001112345566677777888887765 3 4567777778888888
Q ss_pred hhccCCCceee-EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC---CEEEEecCCCCCHHHHHH
Q 013204 349 KAFSDSPIIGE-IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG---DNIMMSPPFIMSPEEVDE 424 (447)
Q Consensus 349 ~~l~~~~~~~~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g---~~iR~~~~~~~t~e~i~~ 424 (447)
+++.-+..... -...+..+.+.++... ....+...+.++|+++.... +.+|+++...+|.+||++
T Consensus 279 ~~~~~~~~~~~~~~rs~~v~sf~~~~~~-----------~~~~~~~~~~~~Gi~~~~~~~~~g~vRiS~~~~nt~eei~~ 347 (360)
T PRK05355 279 DSSDFYRNPVAPEDRSRMNVPFTLADEE-----------LDKKFLAEAKAAGLVGLKGHRSVGGMRASIYNAMPLEGVQA 347 (360)
T ss_pred HhCCCcccCCChhhcCCcEEEEEcCChH-----------HHHHHHHHHHHCCCcccCCCCccCcEEEECCCCCCHHHHHH
Confidence 87731111111 1112234445443320 22456678889999985442 569999999999999999
Q ss_pred HHHHHHHHHHH
Q 013204 425 LISKYGKALKA 435 (447)
Q Consensus 425 ~~~~l~~~l~~ 435 (447)
+++.|++.+..
T Consensus 348 l~~~l~~~~~~ 358 (360)
T PRK05355 348 LVDFMKEFERR 358 (360)
T ss_pred HHHHHHHHHHh
Confidence 99999997653
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.5e-13 Score=130.22 Aligned_cols=238 Identities=16% Similarity=0.178 Sum_probs=144.5
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 154 (447)
+.+...++++.++++.. .+.+++++||++|+..++.... .++++|++..+.|.+...............
T Consensus 49 ~~p~~~~le~~lA~l~g---~~~v~~~~gg~~Ai~~~l~all--------~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~ 117 (382)
T TIGR02080 49 GNPTRDLLQQALAELEG---GAGAVVTNTGMSAIHLVTTALL--------GPDDLLVAPHDCYGGTYRLLNALAKKGCFR 117 (382)
T ss_pred CCchHHHHHHHHHHHhC---CCcEEEEcCHHHHHHHHHHHHc--------CCCCEEEEcCCCcHHHHHHHHHHHhhcCeE
Confidence 55667889999998863 4679999999999999998663 345789999999976532211111100000
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
+..++.. +.+++++.+. +++++|+++..++..|.+.+ +++|.++|
T Consensus 118 ---------v~~~d~~------------------d~~~l~~ai~----~~tklV~l~~p~NPtG~~~d----l~~I~~la 162 (382)
T TIGR02080 118 ---------VLFVDQG------------------DEQALRAALA----QKPKLVLIETPSNPLLRVVD----IAKICHLA 162 (382)
T ss_pred ---------EEEECCC------------------CHHHHHHhcC----cCceEEEEECCCCCCCEecC----HHHHHHHH
Confidence 0001100 1366666664 24567777776666666665 89999999
Q ss_pred HhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCC-cccceeEEEe-ChhHHHHhhhccCCCCccCcCCC
Q 013204 235 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSS-AYMPIGAILV-SPEVSEVIHSQSNTLGSFSHGFT 310 (447)
Q Consensus 235 ~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~g-g~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~t 310 (447)
+++|+++|+||+|..+ ....+ .....|+++ ++|.++| +.+..|+++. ++++.+.+... .....
T Consensus 163 ~~~g~~vvvD~a~~~~-~~~~p-----l~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~-------~~~~g 229 (382)
T TIGR02080 163 KAVGAVVVVDNTFLSP-ALQNP-----LALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWW-------ANNLG 229 (382)
T ss_pred HHcCCEEEEECCCccc-ccCCc-----hhhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHH-------HHccC
Confidence 9999999999998632 11111 112357764 6798875 3346777766 56777666421 12224
Q ss_pred CCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhcc-----CCCcee----------eEeeeeeEEEEEeec
Q 013204 311 YSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFS-----DSPIIG----------EIRGTGLILGTEFAD 373 (447)
Q Consensus 311 ~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~~~----------~~~~~g~~~~i~~~~ 373 (447)
...+|+.+..++..++-+.. ..++..++...+.+.|++.+ .+|... ...|.|.++.+++..
T Consensus 230 ~~~sp~~a~l~lr~l~tl~~--R~~~~~~na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 305 (382)
T TIGR02080 230 VTGGAFDSYLTLRGLRTLVA--RMRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKG 305 (382)
T ss_pred CCCCHHHHHHHHcccchHHH--HHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecC
Confidence 45678777766666654432 24455566666666666431 112111 123668888888863
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.7e-13 Score=132.31 Aligned_cols=162 Identities=18% Similarity=0.206 Sum_probs=107.2
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 154 (447)
..+...+|+++++++. +.+.+++++||++|+..++..+. ...++|++..+.|++........ .+
T Consensus 56 ~~pt~~~Le~~lA~l~---g~~~~l~~ssG~~Ai~~al~al~--------~~Gd~Vl~~~~~Y~~t~~~~~~~--l~--- 119 (425)
T PRK06084 56 MNPTNDVLEQRVAALE---GGVGALAVASGMAAITYAIQTIA--------EAGDNIVSVAKLYGGTYNLLAHT--LP--- 119 (425)
T ss_pred CCchHHHHHHHHHHHh---CCCceeEehhHHHHHHHHHHHHh--------CCCCEEEEeCCCcchHHHHHHHh--cc---
Confidence 4455678999999886 33467889999999999998664 23478999999998754322110 00
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
.++. .+..++.. +++++++.+. +++++|++|++++..|.+.+ +++|.++|
T Consensus 120 -~~gi---~v~~~d~~------------------d~e~le~ai~----~~tklV~lesp~NPtG~v~d----l~~I~~la 169 (425)
T PRK06084 120 -RIGI---ETRFAAHD------------------DIAALEALID----ERTKAVFCESIGNPAGNIID----IQALADAA 169 (425)
T ss_pred -ccee---EEEEECCC------------------CHHHHHHHhc----cCCcEEEEeCCCCCCCeecC----HHHHHHHH
Confidence 0010 01111111 1367777765 24567888887777777766 89999999
Q ss_pred HhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCcccceeEEEeC
Q 013204 235 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSAYMPIGAILVS 288 (447)
Q Consensus 235 ~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg~~~~g~~~~~ 288 (447)
++||+++|+|++++ .+... ......+|+++ ++|.++|.+..+|.++..
T Consensus 170 ~~~~i~vVvD~a~a-~~~~~-----~p~~~gaDivv~S~tK~l~G~g~~~gG~v~~ 219 (425)
T PRK06084 170 HRHGVPLIVDNTVA-TPVLC-----RPFEHGADIVVHSLTKYIGGHGTSIGGIVVD 219 (425)
T ss_pred HHcCCEEEEECCCc-ccccC-----ChhhcCCCEEEECchhcccccccceeEEEEe
Confidence 99999999999986 32221 11233478774 579998855677776653
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.2e-13 Score=129.77 Aligned_cols=234 Identities=14% Similarity=0.070 Sum_probs=138.0
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhh---hhcccCCc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLI---AASLSGLP 151 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~---~~~~~~~~ 151 (447)
..+...+++++++++. +.+..++++||+.|+..++.... ..+++||+..+.|++.... .+...|..
T Consensus 61 ~~p~~~~le~~lA~l~---g~~~av~~~sG~~Ai~~al~al~--------~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~ 129 (389)
T PRK05968 61 DNPTVRAFEEMLAKLE---GAEDARGFASGMAAISSTVLSFV--------EPGDRIVAVRHVYPDAFRLFETILKRMGVE 129 (389)
T ss_pred CChhHHHHHHHHHHHh---CCCcEEEECCHHHHHHHHHHHHh--------CCCCEEEEeCCCchHHHHHHHHHHHHcCce
Confidence 4455778999999886 33456777999999998887543 3347888888888775311 11111111
Q ss_pred cccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHH
Q 013204 152 ALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 231 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~ 231 (447)
+..++.. +.+++++.+. ++.+|++|...+..+. ...+++|.
T Consensus 130 ------------v~~vd~~------------------d~~~l~~~i~-----~tklV~ie~pt~~~~~----~~dl~~i~ 170 (389)
T PRK05968 130 ------------VDYVDGR------------------DEEAVAKALP-----GAKLLYLESPTSWVFE----LQDVAALA 170 (389)
T ss_pred ------------EEEeCCC------------------CHHHHHHhcc-----cCCEEEEECCCCCCCc----HHHHHHHH
Confidence 1111111 1256666542 3456777765444433 34599999
Q ss_pred HHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCc-ccceeEEEeChhHHHHhhhccCCCCccCcC
Q 013204 232 AVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSA-YMPIGAILVSPEVSEVIHSQSNTLGSFSHG 308 (447)
Q Consensus 232 ~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (447)
++|++||+++|+|+++... ....+. . +| .|+++ ++|.++|+ ....|++++++++++.+..... .. .+
T Consensus 171 ~la~~~gi~vivD~a~a~~-~~~~p~--~-~g--~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~---~~-~g 240 (389)
T PRK05968 171 ALAKRHGVVTMIDNSWASP-VFQRPI--T-LG--VDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAY---PY-LG 240 (389)
T ss_pred HHHHHcCCEEEEECCCcch-hccCch--h-cC--CcEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHH---Hh-CC
Confidence 9999999999999998632 211111 1 23 47665 56999873 2346788888888777653110 00 11
Q ss_pred CCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceee----------EeeeeeEEEEEee
Q 013204 309 FTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGE----------IRGTGLILGTEFA 372 (447)
Q Consensus 309 ~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~----------~~~~g~~~~i~~~ 372 (447)
...+++.++.++..|+.+ +...++..++.+++.+.|++.+....+.. ..+.|.++.+++.
T Consensus 241 --~~~~~~~A~~~l~~L~tl--~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~ 310 (389)
T PRK05968 241 --AKLSPFEAWLLLRGLRTL--PLRMKAHEASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFR 310 (389)
T ss_pred --CCCChHHHHHHHcccCcH--HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEEC
Confidence 234566666666666544 23345555567777777776532211110 1255677788875
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.5e-13 Score=129.72 Aligned_cols=215 Identities=13% Similarity=0.095 Sum_probs=131.9
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh---hcccCCc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA---ASLSGLP 151 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~---~~~~~~~ 151 (447)
..+...++++.++++.. .+..+.++||+.|+..+++... ..+++||+..+.|.+..... +...|.
T Consensus 63 ~~p~~~~le~~lA~l~g---~~~~i~~~sG~~Al~~~l~~ll--------~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~- 130 (403)
T PRK07503 63 SNPTLALLEQRMASLEG---GEAAVALASGMGAITATLWTLL--------RPGDEVIVDQTLYGCTFAFLHHGLGEFGV- 130 (403)
T ss_pred CCchHHHHHHHHHHHhC---CCcEEEEcCHHHHHHHHHHHHc--------CCCCEEEEccCccchHHHHHHHHHhhCCE-
Confidence 45567889999998863 3456788899999999987543 33467888777764332111 111111
Q ss_pred cccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHH
Q 013204 152 ALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 231 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~ 231 (447)
.+..++..+ ++++++.+. + ++++|++|..++..|.+.+ +++|.
T Consensus 131 -----------~v~~vd~~d------------------~~~l~~~i~---~-~tklV~le~p~NPtG~~~d----i~~I~ 173 (403)
T PRK07503 131 -----------TVRHVDLTD------------------PAALKAAIS---D-KTRMVYFETPANPNMRLVD----IAAVA 173 (403)
T ss_pred -----------EEEEeCCCC------------------HHHHHHhcC---c-cCcEEEEeCCCCCCCeeeC----HHHHH
Confidence 011122111 366776664 2 4567777776666676665 99999
Q ss_pred HHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCC-cccceeEEEeChhHHHHhhhccCCCCccCcC
Q 013204 232 AVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSS-AYMPIGAILVSPEVSEVIHSQSNTLGSFSHG 308 (447)
Q Consensus 232 ~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~g-g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (447)
++|++||+++|+|++|... ..+.+ .+...|+++ ++|.+++ |....|+++.++++++.++... ....
T Consensus 174 ~la~~~gi~lIvD~a~a~~-~~~~~-----l~~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~-----~~~~ 242 (403)
T PRK07503 174 EIAHGAGAKVVVDNTYCTP-YLQRP-----LELGADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEG-----LKDM 242 (403)
T ss_pred HHHHHcCCEEEEECCCccc-ccCCc-----hhhCCCEEEccccccccCCCceeEEEEEcCHHHHHHHHhhh-----HHhC
Confidence 9999999999999999732 22222 123467765 5799987 3356788888888877775210 0111
Q ss_pred CCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc
Q 013204 309 FTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF 351 (447)
Q Consensus 309 ~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l 351 (447)
.....+++.++.++..|+.+. ...++..++...+.+.|++.
T Consensus 243 ~g~~~s~~~a~l~l~~L~tl~--~r~~~~~~na~~~a~~L~~~ 283 (403)
T PRK07503 243 TGAVMSPFDAFLLMRGLKTLA--LRMDRHCASAQAVAEWLARH 283 (403)
T ss_pred cCCCCCHHHHHHHHcCcchHH--HHHHHHHHHHHHHHHHHHhC
Confidence 234557777776666665442 22344445566666666543
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.8e-13 Score=128.28 Aligned_cols=238 Identities=16% Similarity=0.172 Sum_probs=141.8
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 154 (447)
+.+...+|+++++++.. .+.+++++||++|+..++.... ..+++|++.++.|++...............
T Consensus 50 ~~pt~~~L~~~lA~l~g---~~~~i~~~sg~~Ai~~~l~~l~--------~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~ 118 (386)
T PRK08045 50 GNPTRDVVQRALAELEG---GAGAVLTNTGMSAIHLVTTVFL--------KPGDLLVAPHDCYGGSYRLFDSLAKRGCYR 118 (386)
T ss_pred CCccHHHHHHHHHHHhC---CCeEEEECCHHHHHHHHHHHHc--------CCCCEEEEcCCCcHHHHHHHHHHHhhCCeE
Confidence 55667889999999863 3479999999999999988553 345789999999986432211111000000
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
+..++.. +.+++++.+. +++++|+++..++..|.+.+ +++|.++|
T Consensus 119 ---------v~~vd~~------------------d~e~l~~~l~----~~tklV~l~sP~NPtG~v~d----i~~I~~ia 163 (386)
T PRK08045 119 ---------VLFVDQG------------------DEQALRAALA----EKPKLVLVESPSNPLLRVVD----IAKICHLA 163 (386)
T ss_pred ---------EEEeCCC------------------CHHHHHHhcc----cCCeEEEEECCCCCCCEecC----HHHHHHHH
Confidence 0001100 0256666654 24567777777766776665 89999999
Q ss_pred HhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCc-ccceeEEEe-ChhHHHHhhhccCCCCccCcCCC
Q 013204 235 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSA-YMPIGAILV-SPEVSEVIHSQSNTLGSFSHGFT 310 (447)
Q Consensus 235 ~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg-~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~t 310 (447)
+++|+++|+||+|... ....+ .....|+++ ++|.++|. ....|+++. ++++.+.+... .....
T Consensus 164 ~~~g~~vivDeay~~~-~~~~p-----l~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~-------~~~~g 230 (386)
T PRK08045 164 REAGAVSVVDNTFLSP-ALQNP-----LALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWW-------ANNIG 230 (386)
T ss_pred HHcCCEEEEECCCCcc-ccCCc-----hhhCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHH-------HHhcC
Confidence 9999999999998633 11111 222357764 67988762 134677766 56676665421 11123
Q ss_pred CCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccC-----CCcee----------eEeeeeeEEEEEeec
Q 013204 311 YSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD-----SPIIG----------EIRGTGLILGTEFAD 373 (447)
Q Consensus 311 ~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~-----~~~~~----------~~~~~g~~~~i~~~~ 373 (447)
...+|+.+..++..|+-+. -..++..++...+.+.|++-+. +|... ...|.|.++.+++..
T Consensus 231 ~~~~p~~~~l~~rgl~tl~--~R~~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~ 306 (386)
T PRK08045 231 VTGGAFDSYLLLRGLRTLV--PRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG 306 (386)
T ss_pred CCCCHHHHHHHHhhhccHH--HHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecC
Confidence 4467777776666665332 1234555555566666654311 11111 123668888888853
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.5e-13 Score=129.33 Aligned_cols=237 Identities=16% Similarity=0.140 Sum_probs=137.7
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 154 (447)
..+...+|+++++++. +.+.+++++||++|+..++.... ..+++|++.++.|.+.......... .
T Consensus 51 ~npt~~~Le~~lA~le---g~e~ivvt~gg~~Ai~~~l~all--------~~Gd~Il~~~~~y~~~~~~~~~~~~----~ 115 (388)
T PRK08861 51 GNPNRGLLEQTLSELE---SGKGAVVTNCGTSALNLWVSALL--------GPDDLIVAPHDCYGGTYRLFNTRAN----K 115 (388)
T ss_pred CCchHHHHHHHHHHHh---CCCeEEEECCHHHHHHHHHHHHc--------CCCCEEEEcCCchHHHHHHHHHHHh----c
Confidence 4556788999999886 45799999999999999998653 3357788888888664321111000 0
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
.+. .+..++.. +++++++.+. +++.+|++|.+++..|.+.+ +++|.++|
T Consensus 116 --~gi---~v~~vd~~------------------d~e~l~~~i~----~~tklV~lesP~NPtG~v~d----l~~I~~la 164 (388)
T PRK08861 116 --GDF---KVQFVDQS------------------DAAALDAALA----KKPKLILLETPSNPLVRVVD----IAELCQKA 164 (388)
T ss_pred --CCe---EEEEECCC------------------CHHHHHHhcC----cCCeEEEEECCCCCCCcccC----HHHHHHHH
Confidence 000 00111110 1366666554 24567777776666776766 89999999
Q ss_pred HhcCCEEEEehhhcCCCccccccccccCCCCCCeeee--cccCCCc-ccceeEEEeC-hhHHHHhhhccCCCCccCcCCC
Q 013204 235 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF--AKALSSA-YMPIGAILVS-PEVSEVIHSQSNTLGSFSHGFT 310 (447)
Q Consensus 235 ~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~--sK~l~gg-~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~t 310 (447)
+++|+++|+||+|... ....+ .....|+++. +|.++|. ....|+++++ +++.+.+... .....
T Consensus 165 ~~~gi~vIvDea~~~~-~~~~p-----l~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~-------~~~~G 231 (388)
T PRK08861 165 KAVGALVAVDNTFLTP-VLQKP-----LELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWW-------GNCIG 231 (388)
T ss_pred HHcCCEEEEECCcccc-ccCCC-----cccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHH-------HhccC
Confidence 9999999999998621 11111 2234688765 5988873 1335666664 5566655421 11112
Q ss_pred CCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhcc-----CCCcee----------eEeeeeeEEEEEee
Q 013204 311 YSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFS-----DSPIIG----------EIRGTGLILGTEFA 372 (447)
Q Consensus 311 ~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~~~----------~~~~~g~~~~i~~~ 372 (447)
...+|..+...+..|+-+. -..++..+++..+.+.|++-+ .+|... ...+.|.++.+++.
T Consensus 232 ~~~~p~~a~l~~rgl~Tl~--lR~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~ 306 (388)
T PRK08861 232 ATGTPFDSYMTLRGIRTLG--ARMRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFA 306 (388)
T ss_pred CCCChHHHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeC
Confidence 3445666655444443221 112444445555555555431 112111 12467888888886
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.8e-13 Score=130.84 Aligned_cols=234 Identities=13% Similarity=0.093 Sum_probs=142.1
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcc--cCCcc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASL--SGLPA 152 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~--~~~~~ 152 (447)
..+...++++++++++ +.+.+++++||+.|+..++.... ..++.|++..+.|++........ .+...
T Consensus 51 ~np~~~~lE~~lA~l~---g~~~~l~~~sG~~Ai~~~l~~ll--------~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v 119 (385)
T PRK08574 51 ENPTLRPLEEALAKLE---GGVDALAFNSGMAAISTLFFSLL--------KAGDRVVLPMEAYGTTLRLLKSLEKFGVKV 119 (385)
T ss_pred CCccHHHHHHHHHHHh---CCCcEEEeCCHHHHHHHHHHHHh--------CCCCEEEEcCCCchhHHHHHHHhhccCcEE
Confidence 4456778999999997 34578888999999999988653 33578888888887754322111 11100
Q ss_pred ccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHH
Q 013204 153 LHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQA 232 (447)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~ 232 (447)
..++. +.+++++.+. +.++++|++|.+++..|.+.+ +++|.+
T Consensus 120 ------------~~~~~-------------------d~~~l~~~i~---~~~tklV~ie~p~NPtG~v~d----l~~I~~ 161 (385)
T PRK08574 120 ------------VLAYP-------------------STEDIIEAIK---EGRTKLVFIETMTNPTLKVID----VPEVAK 161 (385)
T ss_pred ------------EEECC-------------------CHHHHHHhcC---ccCceEEEEECCCCCCCEecC----HHHHHH
Confidence 00000 0266776664 225678888888777777776 899999
Q ss_pred HHHhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCcccc-eeEEE-eChhHHHHhhhccCCCCccCcC
Q 013204 233 VVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSAYMP-IGAIL-VSPEVSEVIHSQSNTLGSFSHG 308 (447)
Q Consensus 233 l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~ 308 (447)
+|++||+++|+|++++ .+....+. .+| .|+++ ++|.++|.+-. .|+++ .++++.+.++... ..
T Consensus 162 la~~~gi~livD~t~a-~~~~~~~l---~~G--aDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~-------~~ 228 (385)
T PRK08574 162 AAKELGAILVVDNTFA-TPLLYRPL---RHG--ADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWR-------RR 228 (385)
T ss_pred HHHHcCCEEEEECCCC-ccccCChh---hhC--CcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHH-------Hh
Confidence 9999999999999985 22211111 123 57765 57999863223 35344 4677777665221 11
Q ss_pred CCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccC-----CCceee----------E--eeeeeEEEEEe
Q 013204 309 FTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD-----SPIIGE----------I--RGTGLILGTEF 371 (447)
Q Consensus 309 ~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~-----~~~~~~----------~--~~~g~~~~i~~ 371 (447)
.....+|+.++.++..++.+. ...++..++..++.+.|++.+. +|...+ . .+.|.++.+++
T Consensus 229 ~g~~~~p~~a~l~l~~l~tL~--~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l 306 (385)
T PRK08574 229 LGTIMQPFEAYLVLRGLKTLE--VRFERQCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRV 306 (385)
T ss_pred cCCCCCHHHHHHHHcccCcHH--HHHHHHHHHHHHHHHHHHcCCCcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEe
Confidence 233455776666666665443 2345555566666666664421 221110 1 25788888888
Q ss_pred e
Q 013204 372 A 372 (447)
Q Consensus 372 ~ 372 (447)
.
T Consensus 307 ~ 307 (385)
T PRK08574 307 K 307 (385)
T ss_pred C
Confidence 6
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.1e-13 Score=129.77 Aligned_cols=237 Identities=14% Similarity=0.152 Sum_probs=139.7
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 154 (447)
+.+...+|+++++++. +.+..+.++||++|+..++.... ..+++||+..+.|.+..........
T Consensus 59 ~~p~~~~Le~~lA~~~---g~~~~i~~~sG~~Ai~~~l~all--------~~Gd~Vl~~~~~y~~t~~~~~~~~~----- 122 (388)
T PRK07811 59 GNPTRTALEEQLAALE---GGAYGRAFSSGMAATDCLLRAVL--------RPGDHIVIPNDAYGGTFRLIDKVFT----- 122 (388)
T ss_pred CCccHHHHHHHHHHHh---CCCceEEeCCHHHHHHHHHHHHh--------CCCCEEEEcCCCchHHHHHHHHhCc-----
Confidence 4556788999999886 33345677889999999998664 3457899989999765322111000
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
.++. .+..++.. +++++++.+. + ++++|++|..++..|...+ +++|.++|
T Consensus 123 -~~gi---~~~~~d~~------------------d~e~l~~~i~---~-~tklV~ie~p~NPtg~~~d----l~~I~~la 172 (388)
T PRK07811 123 -RWGV---EYTPVDLS------------------DLDAVRAAIT---P-RTKLIWVETPTNPLLSITD----IAALAELA 172 (388)
T ss_pred -CCCe---EEEEeCCC------------------CHHHHHHhcC---c-CCeEEEEECCCCCcceecC----HHHHHHHH
Confidence 0010 01111111 1366776664 2 4567777766666666554 99999999
Q ss_pred HhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCc-ccceeEEEeC-hhHHHHhhhccCCCCccCcCCC
Q 013204 235 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSA-YMPIGAILVS-PEVSEVIHSQSNTLGSFSHGFT 310 (447)
Q Consensus 235 ~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg-~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~t 310 (447)
++||+++|+||++... ..+.+ .+...|+++ ++|.++|. ....|+++++ +++.+.+... .....
T Consensus 173 ~~~gi~lIvD~a~a~~-~~~~p-----~~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~-------~~~~g 239 (388)
T PRK07811 173 HDAGAKVVVDNTFASP-YLQQP-----LALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFL-------QNGAG 239 (388)
T ss_pred HHcCCEEEEECCCCcc-ccCCc-----hhhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHH-------HHhcC
Confidence 9999999999998632 22222 123467775 56999873 2345777765 5666655421 11112
Q ss_pred CCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccC-----CCcee----------eEeeeeeEEEEEee
Q 013204 311 YSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD-----SPIIG----------EIRGTGLILGTEFA 372 (447)
Q Consensus 311 ~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~-----~~~~~----------~~~~~g~~~~i~~~ 372 (447)
...+|..+..++..|+.+ +...++..++...+.+.|++.+. +|... ...|.|.++.+++.
T Consensus 240 ~~~s~~~a~l~~~~L~tl--~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~ 314 (388)
T PRK07811 240 AVPGPFDAYLTLRGLKTL--AVRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLA 314 (388)
T ss_pred CCCCHHHHHHHHhccCcH--HHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeC
Confidence 234566555455545432 23345556667777777765421 12110 12356888888886
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-11 Score=123.92 Aligned_cols=333 Identities=11% Similarity=0.063 Sum_probs=186.9
Q ss_pred ChHHHHHHHHHHHhcCcCCC------CeEEEeCChhhHHHHHHHHHHHHHHh-cCCCC-cceEEEEcCCCccchhhhhcc
Q 013204 76 TKPSLDLAKELLEMFTASKM------AKVFFTNSGSEANDTQVKLVWYYNNA-LGRPN-KKKFIARQKSYHGSTLIAASL 147 (447)
Q Consensus 76 ~~~~~~l~~~l~~~~~~~~~------~~v~~~~sGseA~~~Al~~~~~~~~~-~~~~~-~~~vi~~~~~yhg~~~~~~~~ 147 (447)
+....++.+++++++..... ..-++++|||+||..|+.++|..... .|..+ ++-+++.+...|-+..-+...
T Consensus 121 ~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa~~ 200 (490)
T PLN02880 121 TELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKACQI 200 (490)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHHHHHH
Confidence 34455566777777632111 23688999999999999999865422 12222 234555566678876655554
Q ss_pred cCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhh--CCCcEEEEEEccccCCCCCccCChh
Q 013204 148 SGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE--GPETIAAFIAEPVIGAGGVIPPPAT 225 (447)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~a~vi~epv~~~~G~~~~~~~ 225 (447)
-|... ..+..++++....+ ..+.+.|++.+.+. ....+.+|+........|.+-|
T Consensus 201 lGlg~---------~~v~~Vp~d~~~~~-----------~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDp--- 257 (490)
T PLN02880 201 AGIHP---------ENCRLLKTDSSTNY-----------ALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDP--- 257 (490)
T ss_pred cCCCH---------HHEEEeecCCCcCC-----------cCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCc---
Confidence 44321 11222333210000 01147777777542 2234556666666666687877
Q ss_pred HHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCC-CCCeeeec--ccCCCcccceeEEEeChh--HHHHhhhccC
Q 013204 226 YFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSI-KPDLVSFA--KALSSAYMPIGAILVSPE--VSEVIHSQSN 300 (447)
Q Consensus 226 ~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~-~~d~v~~s--K~l~gg~~~~g~~~~~~~--~~~~~~~~~~ 300 (447)
+++|.++|++||+++++|-+|.|+...-..+-....|+ .+|.+++. |.+..+ .+.|+++.+.. +.+.+.....
T Consensus 258 -l~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P-~~~g~llvr~~~~l~~~~~~~~~ 335 (490)
T PLN02880 258 -LLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTN-FDCSLLWVKDRNALIQSLSTNPE 335 (490)
T ss_pred -HHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCC-ccEEEEEEeCHHHHHHHHccCHH
Confidence 99999999999999999999986532211111123454 58888865 888777 68888887642 2233321110
Q ss_pred CCCc-------cCcCCCC---CCcHHHHHHHHHHHHHHhhhcHHHHHH---HHHHHHHHhHhhccCCCceeeEeeeeeEE
Q 013204 301 TLGS-------FSHGFTY---SGHPVSCAVAIEALKIYKERNIVEQVN---KIAPKFQDGVKAFSDSPIIGEIRGTGLIL 367 (447)
Q Consensus 301 ~~~~-------~~~~~t~---~~~~~~~~aa~a~l~~~~~~~~~~~~~---~~~~~l~~~L~~l~~~~~~~~~~~~g~~~ 367 (447)
.... ......+ .+-.......+.+++.+..+++.+.++ ++.+++.+.|++..+..++.+ ....++
T Consensus 336 Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~--~~~~iv 413 (490)
T PLN02880 336 FLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTP--RIFSLV 413 (490)
T ss_pred HhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecC--CceEEE
Confidence 0000 0000001 111122334555677666677777777 788888887766533333222 223344
Q ss_pred EEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee----C-CEEEEecCCCC-CHHHHHHHHHHHHHHHHHHHH
Q 013204 368 GTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS----G-DNIMMSPPFIM-SPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 368 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----g-~~iR~~~~~~~-t~e~i~~~~~~l~~~l~~~~~ 438 (447)
.+.+....... .....+...+.++|.+.|-+.... | ..+|+++.... +++|++.+++.|.+...++.+
T Consensus 414 ~Fr~~~~~~~~---~~~~~~n~~l~~~l~~~g~~~v~~t~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~~~~ 487 (490)
T PLN02880 414 CFRLVPPKNNE---DNGNKLNHDLLDAVNSSGKIFISHTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEASKLLG 487 (490)
T ss_pred EEEEeCCCCCh---hhHHHHHHHHHHHHHhCCCEEEEEEEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45544211100 000113345667777666554322 2 35999876444 569999999999998877643
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.1e-11 Score=116.66 Aligned_cols=352 Identities=14% Similarity=0.142 Sum_probs=184.7
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHH
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEAND 109 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~ 109 (447)
.....|||+.+-.++ +.+.+++...+..+.-.+ .-.+...+|++.+++++ +.+.+++++||+.|+.
T Consensus 42 ~~~~v~IDLlSDS~T-------~aMs~~q~a~~~vGDd~Y----agd~s~~~LE~~vAe~l---G~e~aV~v~sGTaAl~ 107 (460)
T PRK13237 42 RSEDVYIDLLTDSGT-------NAMSDRQWAGMMIGDEAY----AGSRNFYHLEETVQEYY---GFKHVVPTHQGRGAEN 107 (460)
T ss_pred CcCcEEEECcccCCc-------hhccHHHHHHHhhcchhh----cCCCcHHHHHHHHHHHH---CCCeEEEeCCHHHHHH
Confidence 445689999988765 334444344443322211 12345678999999997 6678999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccch-hhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGST-LIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (447)
.+..+. .++| + ++ .+.+|-.+ ...+...|... .+............+.+. ...
T Consensus 108 ll~~l~-------v~pG-d-~V--p~n~~f~Tt~ahI~~~Ga~f----vDi~~d~a~~~~~~~p~t-----------gnl 161 (460)
T PRK13237 108 LLSRIA-------IKPG-Q-YV--PGNMYFTTTRYHQELNGGIF----VDIIIDEAHDAQSDHPFK-----------GNV 161 (460)
T ss_pred HHHHhC-------CCCc-C-EE--CCccchHhhHHHHHhCCcEE----EeeecccccccccCCCCC-----------CCc
Confidence 864322 1122 3 32 44444432 22132222210 000000000000000000 112
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCC-----------cccccc
Q 013204 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG-----------RLGTMF 257 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g-----------~~g~~~ 257 (447)
+++.|++.+...++..++.+.++-..+..|..+.+.+.++++.++|++||+.||.|-++. +| ..|...
T Consensus 162 D~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra-~gna~fI~~re~~y~~~~i 240 (460)
T PRK13237 162 DLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRC-VENAYFIKEREEGYQDKSI 240 (460)
T ss_pred CHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcch-hcChhhhcccccccCCCcH
Confidence 258888888754444555555555444444466677789999999999999999998886 43 111110
Q ss_pred c--cccCCCCCCeeeec--ccCCCcccceeEEEe-ChhHHHHhhhccCCCCccCcCCCCCCcHH-HHHHHHHHHHHHhhh
Q 013204 258 G--CDKYSIKPDLVSFA--KALSSAYMPIGAILV-SPEVSEVIHSQSNTLGSFSHGFTYSGHPV-SCAVAIEALKIYKER 331 (447)
Q Consensus 258 ~--~~~~~~~~d~v~~s--K~l~gg~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~aa~a~l~~~~~~ 331 (447)
. .....-..|.++|| |.++.+ . .|+++. ++++.+.++...- .+....|+.+-.- -+.+....|....+.
T Consensus 241 ~ei~~e~~s~aD~~t~S~~K~~~~~-~-GG~i~t~D~eL~~~~r~~~~---~~eG~~tygg~~grd~~alAvgl~E~~~~ 315 (460)
T PRK13237 241 KEIVHEMFSYADGCTMSGKKDCLVN-I-GGFLAMNDEELFDEAKELVV---VYEGMPSYGGMAGRDMEAMAIGIEESVQY 315 (460)
T ss_pred hHHhhhccCcCcEEEEeCCCCCCCC-C-ceEEEECCHHHHHHHHHhcc---ccCCCcCCCChhhhHHHHHHhHHHhhchH
Confidence 0 00001136888776 655432 1 244554 5678887764211 1112224443211 222222234444445
Q ss_pred cHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecC--CCCCCCCCCCcchHHHHHHH-HHHcCceEEeeC--
Q 013204 332 NIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADN--KSPNEPFPPEWGIGAYFGAQ-CEKHGMLVRVSG-- 406 (447)
Q Consensus 332 ~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~-l~~~Gi~~~~~g-- 406 (447)
+...+.-...++|.+.|++. +.|++....| .-+.++...- .-+..-|+ +..+.-. .++.||-....|
T Consensus 316 ~y~~~ri~~~~~l~~~L~~~-Gvpv~~p~gg--H~v~vda~~~lph~~~~~~p-----~~al~~~ly~~~GiR~~e~g~~ 387 (460)
T PRK13237 316 EYIEHRVGQVRYLGEKLLAA-GVPIVEPVGG--HAVFLDARRFLPHLPQDQFP-----AQALAAELYIESGVRSMERGIV 387 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCceecCCCc--eEEEEEhHHhCCCCCcccCh-----HHHHHHHHHHHhCcCeEeecce
Confidence 66666666778888888775 5565544333 3333443321 11112222 2333333 345565543111
Q ss_pred ----------------CEEEEecCC-CCCHHHHHHHHHHHHHHHHH
Q 013204 407 ----------------DNIMMSPPF-IMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 407 ----------------~~iR~~~~~-~~t~e~i~~~~~~l~~~l~~ 435 (447)
+.+|+..|- .-|.+++|.+.++|....+.
T Consensus 388 ~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~ 433 (460)
T PRK13237 388 SAGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKH 433 (460)
T ss_pred ecccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHHh
Confidence 458998774 45999999999998887755
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.7e-11 Score=126.56 Aligned_cols=315 Identities=14% Similarity=0.133 Sum_probs=190.4
Q ss_pred hHHHHHHHHHHHhcCcCCCC-eEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccC
Q 013204 77 KPSLDLAKELLEMFTASKMA-KVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQ 155 (447)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~-~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 155 (447)
....++.+++++++ +++ -.++.++|+.|..+++.++|.|+..+|+.+++ +++...+.||+........|..
T Consensus 530 q~i~elq~~l~elt---Gmd~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~-~vlip~saHgtnPasa~~~G~~---- 601 (939)
T TIGR00461 530 ELIAQLEKWLCSIT---GFDAISLQPNSGAQGEYAGLRVIRSYHESRGENHRN-ICLIPVSAHGTNPASAAMAGMQ---- 601 (939)
T ss_pred HHHHHHHHHHHHHH---CCCCcccCCchHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEccccCcCHHHHHHCCCE----
Confidence 45568888999886 444 34455688888888999999988888875554 4555678898864443333321
Q ss_pred CCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHH
Q 013204 156 KFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVK 235 (447)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~ 235 (447)
+..+++... +..++++|++.+...+ +++++|++...++. |.+.++ +++|+++|+
T Consensus 602 --------Vv~V~~d~~-------------G~iDle~L~~~i~~~~-~~taaV~iT~pst~-G~~e~~---I~eI~~iah 655 (939)
T TIGR00461 602 --------VVPVNCDQD-------------GNIDLVDLKNKAEQHG-DELAAVMVTYPSTH-GVFEPT---IQHACDIVH 655 (939)
T ss_pred --------EEEeccCCC-------------CCcCHHHHHHHHhhcC-CceEEEEEEeCCcC-ceeccc---HHHHHHHHH
Confidence 122332111 1122588888886533 46777777665554 545433 999999999
Q ss_pred hcCCEEEEehhhcCCCccccccccccCCCCCCeeeec--ccCC----CcccceeEEEeChhHHHHhhhcc--C------C
Q 013204 236 KYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALS----SAYMPIGAILVSPEVSEVIHSQS--N------T 301 (447)
Q Consensus 236 ~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l~----gg~~~~g~~~~~~~~~~~~~~~~--~------~ 301 (447)
++|.++++|-++..- ..+ ....-.+..|+++++ |.|+ +|+..+|++.+++++...+-... . +
T Consensus 656 ~~G~~v~VDgAq~~a-l~~---l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~t~d~~gr 731 (939)
T TIGR00461 656 SFGGQVYLDGANMNA-QVG---LTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSMITGIGG 731 (939)
T ss_pred HcCCEEEEEecChhh-CCC---CCCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCcccccccCCCC
Confidence 999999999888521 111 011112457999885 8666 34478999999988665543210 0 0
Q ss_pred CCccCcCC-CCCCcHHHHHHHHHHHHHHhhhcHH---HHHHHHHHHHHHhHhhccCCCceeeEeeeee-E--EEEEeecC
Q 013204 302 LGSFSHGF-TYSGHPVSCAVAIEALKIYKERNIV---EQVNKIAPKFQDGVKAFSDSPIIGEIRGTGL-I--LGTEFADN 374 (447)
Q Consensus 302 ~~~~~~~~-t~~~~~~~~~aa~a~l~~~~~~~~~---~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~-~--~~i~~~~~ 374 (447)
...+...+ ..+++...+..++..+..+..+++. +..-.+..++.++|++. ++++... ..+. + +.+++...
T Consensus 732 eq~Iga~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~~--~~~l~~~-~~~~~~hEfv~~~~~~ 808 (939)
T TIGR00461 732 SKSIGSVSAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKDH--YPILFVG-TLKHVAHECILDLRPL 808 (939)
T ss_pred ccccccccccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcc--CcccccC-CCCceeEEEEEeccch
Confidence 00001111 2344445555666667777666554 33444677888888652 2222110 0111 1 12333311
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHcCceEEee----CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 375 KSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS----GDNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
+.. .......+.++|++.|++.... .+.+.+.|.-..+++|||+++++|.+..+++++
T Consensus 809 ~~~------~g~~~~dIakrL~d~G~hapt~~~pv~g~lmiepTE~eskeelD~f~~al~~I~~e~~~ 870 (939)
T TIGR00461 809 KAK------TGIEAIDVAKRLQDYGFHAPTLSFPVPGTLMVEPTESESLEELDRFCDAMIAIKEEINA 870 (939)
T ss_pred hhh------cCCCHHHHHHHHHhCCeeccccCCccCCeEEEEeeccCCHHHHHHHHHHHHHHHHHHHH
Confidence 100 0012567999999999986432 246777777899999999999999888877765
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-12 Score=129.51 Aligned_cols=160 Identities=18% Similarity=0.192 Sum_probs=110.0
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh---hcccCCc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA---ASLSGLP 151 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~---~~~~~~~ 151 (447)
..+...+|+++++++. +.+.+++++||++|+..++..+. ..+++||+..+.|++..... +...|..
T Consensus 55 ~~p~~~~le~~lA~l~---g~~~~v~~~sG~~Ai~~al~~l~--------~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~ 123 (418)
T TIGR01326 55 MNPTTDVLEQRIAALE---GGVAALAVASGQAAITYAILNLA--------QAGDNIVSSSYLYGGTYNLFKHTLKRLGIE 123 (418)
T ss_pred CChhHHHHHHHHHHHh---CCCeEEEEccHHHHHHHHHHHHh--------CCCCEEEEECCCcHHHHHHHHHHHHHcCcE
Confidence 4566789999999996 34578999999999999998664 33478899899997753221 1111111
Q ss_pred cccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHH
Q 013204 152 ALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 231 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~ 231 (447)
+..++.. +++++++.+. +++++|++|.+++..|.+.+ +++|.
T Consensus 124 ------------v~~v~~~------------------d~~~l~~~l~----~~t~~V~le~p~NPtg~v~d----l~~I~ 165 (418)
T TIGR01326 124 ------------VRFVDPD------------------DPEEFEKAID----ENTKAVFAETIGNPAINVPD----IEAIA 165 (418)
T ss_pred ------------EEEECCC------------------CHHHHHHhcC----cCCeEEEEECCCCCCCeecC----HHHHH
Confidence 1111110 1366776664 34667888887777777665 99999
Q ss_pred HHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCcccceeEEEeCh
Q 013204 232 AVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSAYMPIGAILVSP 289 (447)
Q Consensus 232 ~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg~~~~g~~~~~~ 289 (447)
++|++||+++|+||++. .+.. .......+|++ +++|.++|.+.++|+++.++
T Consensus 166 ~la~~~~i~livD~t~~-~~~~-----~~~l~~g~Divv~S~sK~l~g~G~~lGg~v~~~ 219 (418)
T TIGR01326 166 EVAHAHGVPLIVDNTFA-TPYL-----CRPIDHGADIVVHSATKYIGGHGTAIGGVIVDG 219 (418)
T ss_pred HHHHHcCCEEEEECCCc-hhhc-----CCchhcCCeEEEECccccccCCccceEEEEEec
Confidence 99999999999999986 2211 12222346877 46899998558999988854
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-12 Score=125.37 Aligned_cols=231 Identities=17% Similarity=0.115 Sum_probs=139.9
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 154 (447)
..+...+|+++++++. +.+.++.++||++|+..++.++ ..+++||+..+.|.+......... +
T Consensus 52 ~~p~~~~le~~lA~le---g~~~~v~~~sG~aAi~~~l~~l---------~~GD~VI~~~~~yg~~~~~~~~~~--~--- 114 (364)
T PRK07269 52 KNPTRAKLEETLAAIE---SADYALATSSGMSAIVLAFSVF---------PVGSKVVAVRDLYGGSFRWFNQQE--K--- 114 (364)
T ss_pred CCccHHHHHHHHHHHh---CCCeEEEeCCHHHHHHHHHHHh---------CCCCEEEEecCCcCchHHHHHHHH--h---
Confidence 4556788999999986 5668999999999999988543 234788888888866532111100 0
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
.... .+++. .+.+++++.+. + ++++|++|..++..|.... +++|+++|
T Consensus 115 -~~~~------~~~~~-----------------~d~~~l~~~i~---~-~TklV~lesP~NPtg~~~d----i~~I~~la 162 (364)
T PRK07269 115 -EGRF------HFTYA-----------------NTEEELIAAIE---E-DTDIVYIETPTNPLMVEFD----IEKVAKLA 162 (364)
T ss_pred -cCcE------EEEec-----------------CCHHHHHHhcC---c-CceEEEEECCCCCCCeeeC----HHHHHHHH
Confidence 0000 00000 01266666664 2 4556766666555565554 99999999
Q ss_pred HhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec--ccCCCcc-cceeEEEe-ChhHHHHhhhccCCCCccCcCCC
Q 013204 235 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAY-MPIGAILV-SPEVSEVIHSQSNTLGSFSHGFT 310 (447)
Q Consensus 235 ~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l~gg~-~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~t 310 (447)
+++|+++|+||++... .. ....+.-.|++++| |.++|.+ .-.|+++. ++++.+.+... .....
T Consensus 163 ~~~gi~vvvD~t~~~~-~~-----~~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~-------~~~~G 229 (364)
T PRK07269 163 HAKGAKVIVDNTFYSP-IY-----QRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYN-------LNTTG 229 (364)
T ss_pred HHcCCEEEEECCCccc-cc-----CCchhhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHH-------HHHhC
Confidence 9999999999996411 11 12234457888764 8887621 11355666 46676666421 11112
Q ss_pred CCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCcee--eEeeeeeEEEEEee
Q 013204 311 YSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIG--EIRGTGLILGTEFA 372 (447)
Q Consensus 311 ~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~--~~~~~g~~~~i~~~ 372 (447)
...+|+.++.++..|+-+ +...++..++..++.+.|++. |.+. ..++.|.++.+.+.
T Consensus 230 ~~~s~~~a~l~~~~L~tL--~~r~~~~~~na~~~a~~L~~~---p~v~~v~ypg~gg~~sf~~~ 288 (364)
T PRK07269 230 AVLSPFDSYLLMRGLKTL--SLRMERSTANAQEVVAFLKKS---PAVKEVLYTGKGGMISFKVA 288 (364)
T ss_pred CCCCHHHHHHHHcCCCcH--HHHHHHHHHHHHHHHHHHHhC---CCccEEeCCCcCcEEEEEEC
Confidence 345777777666666543 223455566666776666643 4222 22577888888874
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-11 Score=130.96 Aligned_cols=358 Identities=15% Similarity=0.125 Sum_probs=195.0
Q ss_pred CCCEEEecCCccccccCCCCCHHHH-HHHHHHHhcCC-cccc---cCcCCChHHHHHHHHHHHhcCcCCCC-eEEEeCCh
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLV-AAATAQLNTLP-FYHS---FWNRTTKPSLDLAKELLEMFTASKMA-KVFFTNSG 104 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~-~a~~~~~~~~~-~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~-~v~~~~sG 104 (447)
++..|||..+.. .-.|..+ +++.+...+.. ..++ ......+...+..+.+++++.....+ .|+|++++
T Consensus 33 ~~~iYLD~Aatt------~~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsna 106 (805)
T PLN02724 33 KGVVYLDHAGAT------LYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGA 106 (805)
T ss_pred CCCEeEeCCCCC------CCCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCCh
Confidence 346899986552 2244444 44444544321 1111 11112344556667777777433334 58999999
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhH
Q 013204 105 SEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEE 184 (447)
Q Consensus 105 seA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (447)
|+|+..+..... - .+++.||+ ...-|.+....+.... +.+.. +..++.+.... .+......
T Consensus 107 T~alnlva~~l~------~-~~gd~Iv~-t~~eH~svl~~~~~a~----~~G~~-----v~~v~~~~~~~--~~~~~~g~ 167 (805)
T PLN02724 107 TAALKLVGETFP------W-SSESHFCY-TLENHNSVLGIREYAL----EKGAA-----AIAVDIEEAAN--QPTNSQGS 167 (805)
T ss_pred HHHHHHHHHHCC------C-CCCCeEEE-eeccccchHHHHHHHH----HcCCe-----EEeccchhccc--cccccccc
Confidence 999998866531 1 22355655 5566665433322110 01110 11111110000 00000000
Q ss_pred HHHHHHHHHHHHHH----h--hCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhc--------CCEEEEehhhcCC
Q 013204 185 YSTRLANNLEDLIL----K--EGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKY--------DILFIADEVICAF 250 (447)
Q Consensus 185 ~~~~~~~~le~~l~----~--~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~--------g~~li~DEv~~g~ 250 (447)
. ....+++++.+. . ...+++.+|.+..+.+..|.+.| ++.+..+++.. ++++++|-+|+ +
T Consensus 168 ~-~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~p----i~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~-~ 241 (805)
T PLN02724 168 V-VVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFP----LDLVKLIKDNQHSNFSKSGRWMVLLDAAKG-C 241 (805)
T ss_pred c-ccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCC----HHHHHHHHHhcccccccCcceEEEeehhhh-c
Confidence 0 000133444321 1 11235578999999999999988 66665545432 36899999997 5
Q ss_pred CccccccccccCCCCCCeeeec--ccCCCcccceeEEEeChhHHHHhhhccCCCC--------------------ccCcC
Q 013204 251 GRLGTMFGCDKYSIKPDLVSFA--KALSSAYMPIGAILVSPEVSEVIHSQSNTLG--------------------SFSHG 308 (447)
Q Consensus 251 g~~g~~~~~~~~~~~~d~v~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~--------------------~~~~~ 308 (447)
|.. + ++...+.+|++++| |.++++ .++|++++++++.+.+.......+ .+.
T Consensus 242 g~~--p--iDv~~~~~Dfl~~S~HK~~GgP-~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE-- 314 (805)
T PLN02724 242 GTS--P--PDLSRYPADFVVVSFYKIFGYP-TGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFE-- 314 (805)
T ss_pred CCC--C--CChhhcCCCEEEEecceeccCC-CCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhc--
Confidence 432 1 23334568999988 877665 579999999988766542100000 011
Q ss_pred CCCCCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHhHhhccC---CCceeeE---------eeeeeEEEEEeec
Q 013204 309 FTYSGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQDGVKAFSD---SPIIGEI---------RGTGLILGTEFAD 373 (447)
Q Consensus 309 ~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~---~~~~~~~---------~~~g~~~~i~~~~ 373 (447)
.-+.|..++++..++++.+.+ +...++.+.+.+++.+.|+++.. .+.+.-. ...+.++.+.+..
T Consensus 315 -~GT~n~~~i~~l~aal~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~ 393 (805)
T PLN02724 315 -DGTISFLSIAALRHGFKLLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKR 393 (805)
T ss_pred -CCCcchhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEc
Confidence 113455666666677776654 45667888889999999988731 1122111 1245566666654
Q ss_pred CCCCCCCCCCCcchHHHHHHHHHHcCceEEee----------------------------------------CCEEEEec
Q 013204 374 NKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS----------------------------------------GDNIMMSP 413 (447)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----------------------------------------g~~iR~~~ 413 (447)
.....- ....+...+.++||.++.+ .+.+|+|+
T Consensus 394 ~~~~~v-------~~~~v~~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~ 466 (805)
T PLN02724 394 ADGSWV-------GHREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSF 466 (805)
T ss_pred CCCCEe-------CHHHHHHHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEc
Confidence 321110 0112233334556666521 14599999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 013204 414 PFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 414 ~~~~t~e~i~~~~~~l~~~l~ 434 (447)
.+.+|.+|||++++.|++..-
T Consensus 467 g~ynt~eDvd~lv~~l~~~~~ 487 (805)
T PLN02724 467 GYMSTFEDCQKFIDFIISSFV 487 (805)
T ss_pred CccCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999764
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.7e-11 Score=116.40 Aligned_cols=311 Identities=12% Similarity=0.087 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEE
Q 013204 52 PRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFI 131 (447)
Q Consensus 52 p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi 131 (447)
++-.+++.+.+..+.. .+..+...++++++++.+ +.+++++++||++|+..++..+. -..+++||
T Consensus 11 ~~~~~~~~~~l~~~~~-----~g~~~~~~~~e~~la~~~---g~~~~v~~~sgt~al~~~l~~~~-------~~~Gd~Vi 75 (375)
T PRK11706 11 GTELDYIQQAMSSGKL-----CGDGGFTRRCQQWLEQRF---GSAKVLLTPSCTAALEMAALLLD-------IQPGDEVI 75 (375)
T ss_pred HHHHHHHHHHHHcCCc-----cCCCHHHHHHHHHHHHHh---CCCeEEEECCHHHHHHHHHHHhC-------CCCCCEEE
Confidence 3446677777765422 123455678888888886 45689999999999988887541 12357899
Q ss_pred EEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEc
Q 013204 132 ARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAE 211 (447)
Q Consensus 132 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~e 211 (447)
+..+.|..........+..+. .++.... . -..+++++++.+. + ++++|++.
T Consensus 76 v~~~t~~~~~~~~~~~G~~~v-------------~~d~d~~-----------~-~~~d~~~le~~i~---~-~tk~i~~~ 126 (375)
T PRK11706 76 MPSYTFVSTANAFVLRGAKIV-------------FVDIRPD-----------T-MNIDETLIEAAIT---P-KTRAIVPV 126 (375)
T ss_pred ECCCCcHHHHHHHHHcCCEEE-------------EEecCCC-----------c-CCcCHHHHHHhcC---C-CCeEEEEe
Confidence 988888776544433222221 1111100 0 0011367777664 2 34455532
Q ss_pred cccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc--cccccccccCCCCCCeeeec----ccCCCcccceeEE
Q 013204 212 PVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR--LGTMFGCDKYSIKPDLVSFA----KALSSAYMPIGAI 285 (447)
Q Consensus 212 pv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~--~g~~~~~~~~~~~~d~v~~s----K~l~gg~~~~g~~ 285 (447)
+ ..|...+ +++|.++|++||+++|.|++|+ +|. .|.. .+--.|+.+|| |.++.| .+.+++
T Consensus 127 --~-~~G~~~~----~~~i~~la~~~~i~vIeD~a~a-~g~~~~~~~-----~g~~~~~~~~Sf~~~K~l~~g-~gG~~~ 192 (375)
T PRK11706 127 --H-YAGVACE----MDTIMALAKKHNLFVVEDAAQG-VMSTYKGRA-----LGTIGHIGCFSFHETKNYTAG-EGGALL 192 (375)
T ss_pred --C-CCCCccC----HHHHHHHHHHcCCEEEEECccc-cccccCCee-----eecCcCEEEEeCCCCcccccc-CCeEEE
Confidence 2 2454444 8999999999999999999997 433 1211 12224777888 988765 455666
Q ss_pred EeChhHHHHhhhccCCC--C-c-----------cCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc
Q 013204 286 LVSPEVSEVIHSQSNTL--G-S-----------FSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF 351 (447)
Q Consensus 286 ~~~~~~~~~~~~~~~~~--~-~-----------~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l 351 (447)
+.++++.+.+......- + . ...+.++-.+.+.++.+++-++.+ ++..++.+++.+++++.|..+
T Consensus 193 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l--~~~~~~R~~~~~~~~~~L~~~ 270 (375)
T PRK11706 193 INDPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQLEAA--DRINQRRLALWQRYYDALAPL 270 (375)
T ss_pred ECCHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCC
Confidence 66778776543221100 0 0 001223333445555555555543 344566666777777777665
Q ss_pred cCCCcee------eEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-----------------C--
Q 013204 352 SDSPIIG------EIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-----------------G-- 406 (447)
Q Consensus 352 ~~~~~~~------~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----------------g-- 406 (447)
...+.+. .......++.+.+.... ....+.+.|.++||.++.. +
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~ 339 (375)
T PRK11706 271 AEAGRIELPSIPDDCKHNAHMFYIKLRDLE-----------DRSALINFLKEAGIMAVFHYIPLHSSPAGERFGRFHGED 339 (375)
T ss_pred CcCCeeecCCCCCCCceeeEEEEEEECCcC-----------CHHHHHHHHHHCCCCccccCCccCcchhhHhcCCCCCCC
Confidence 3111110 11111223334443211 1456888999999985411 0
Q ss_pred --------CEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 407 --------DNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 407 --------~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
..+.+-.....+++|++..++.|++++
T Consensus 340 p~a~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~ 374 (375)
T PRK11706 340 RYTTKESERLLRLPLFYNLTDVEQRTVIDTILEFF 374 (375)
T ss_pred hHHHHHHhCcEeccCCCCCCHHHHHHHHHHHHHHh
Confidence 224444445578999999999998764
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.9e-12 Score=125.47 Aligned_cols=235 Identities=11% Similarity=0.134 Sum_probs=137.2
Q ss_pred hHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCC
Q 013204 77 KPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQK 156 (447)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 156 (447)
+...+|+++++++. +.+.+++++||++|+..++.... ..+++||+.++.|.+........- ..
T Consensus 61 pt~~~Le~~iA~le---~~~~~~~~~sG~~Ai~~~l~all--------~~GD~Vvv~~~~Y~~t~~l~~~~l------~~ 123 (394)
T PRK09028 61 PTHFAFQAAIVELE---GGAGTALYPSGAAAISNALLSFL--------KAGDHLLMVDSCYEPTRDLCDKIL------KG 123 (394)
T ss_pred chHHHHHHHHHHHh---CCCcEEEECCHHHHHHHHHHHHh--------CCCCEEEEECCCcHHHHHHHHHhh------hh
Confidence 34568889999884 33468999999999999987653 345789999999976643211100 00
Q ss_pred CCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHh
Q 013204 157 FDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKK 236 (447)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~ 236 (447)
++.. +..++.. + .+++++.+. +++++|++|.+.+..|.+.+ +++|+++|++
T Consensus 124 ~Gi~---v~~v~~~----------~--------~e~l~~~l~----~~TklV~lespsNPtg~v~d----l~~I~~la~~ 174 (394)
T PRK09028 124 FGIE---TTYYDPM----------I--------GEGIRELIR----PNTKVLFLESPGSITMEVQD----VPTLSRIAHE 174 (394)
T ss_pred cceE---EEEECCC----------C--------HHHHHHhcC----cCceEEEEECCCCCCCcHHH----HHHHHHHHHH
Confidence 1110 0011100 0 145666553 35678888887777666654 9999999999
Q ss_pred cCCEEEEehhhcCCCccccccccccCCCCCCeeee--cccCCCc-ccceeEEEeChhHHHHhhhccCCCCccCcCCCCCC
Q 013204 237 YDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF--AKALSSA-YMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSG 313 (447)
Q Consensus 237 ~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~--sK~l~gg-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 313 (447)
||+++++|++|+. +. .+.-..+-+|+++. .|.++|. -.-.|+++.++++.+.+.... ...-...
T Consensus 175 ~g~~lvvD~t~a~-p~-----~~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~-------~~~G~~~ 241 (394)
T PRK09028 175 HDIVVMLDNTWAS-PI-----NSRPFEMGVDISIQAATKYIVGHSDVMLGTATANEKHWDQLREHS-------YLMGQCT 241 (394)
T ss_pred cCCEEEEECCccc-cc-----cCCccccCceEEEEeCCeEecCCCCEEEEEEECCHHHHHHHHHHH-------HhcCCCC
Confidence 9999999999962 11 12222344788864 5988773 233466666777666554211 0111234
Q ss_pred cHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccC-----CCcee----------eEeeeeeEEEEEee
Q 013204 314 HPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD-----SPIIG----------EIRGTGLILGTEFA 372 (447)
Q Consensus 314 ~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~-----~~~~~----------~~~~~g~~~~i~~~ 372 (447)
+|..+.-.+..|+-+. -..++..++...+.+.|++-+. +|... ...|.|.++.+.+.
T Consensus 242 ~p~~a~l~~rgl~TL~--lR~~~~~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~ 313 (394)
T PRK09028 242 SPDDVYLAMRGLRTLG--VRLAQHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLK 313 (394)
T ss_pred CHHHHHHHHcccCcHH--HHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhccCCCceEEEEEC
Confidence 5666555444444221 1234445555666666654321 12111 12356888888886
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.7e-12 Score=123.62 Aligned_cols=213 Identities=15% Similarity=0.119 Sum_probs=125.7
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh---hcccCCc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA---ASLSGLP 151 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~---~~~~~~~ 151 (447)
+.+...+|+++++++. +.+.+++++||++|+..++.... .++++||+.++.|.+..... ....|..
T Consensus 63 ~~pt~~~Le~~lA~l~---g~~~~l~~~sgt~Ai~~~l~al~--------~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~ 131 (394)
T PRK07050 63 ATPTSLALAQRLAEIE---GGRHALLQPSGLAAISLVYFGLV--------KAGDDVLIPDNAYGPNRDHGEWLARDFGIT 131 (394)
T ss_pred CCHHHHHHHHHHHHHh---CCCeEEEeccHHHHHHHHHHHHh--------CCCCEEEEecCCcccHHHHHHHHHHhcCeE
Confidence 5666788999999886 45689999999999999998663 34578999999997654211 1111111
Q ss_pred cccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHH
Q 013204 152 ALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 231 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~ 231 (447)
+..++..+ .+++++.+. +++++|++|...+..|.. ..+++|.
T Consensus 132 ------------v~~vd~~~------------------~~~l~~~i~----~~tklV~le~p~Np~~~~----~di~~I~ 173 (394)
T PRK07050 132 ------------VRFYDPLI------------------GAGIADLIQ----PNTRLIWLEAPGSVTMEV----PDVPAIT 173 (394)
T ss_pred ------------EEEECCCC------------------HHHHHHhcC----CCCeEEEEECCCCCCccH----hhHHHHH
Confidence 01111100 145666554 345677777665555433 3499999
Q ss_pred HHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCc-ccceeEEEe-ChhHHHHhhhccCCCCccCc
Q 013204 232 AVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSA-YMPIGAILV-SPEVSEVIHSQSNTLGSFSH 307 (447)
Q Consensus 232 ~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg-~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~ 307 (447)
++|+++|+++|+|++|. .+.. +.-.....|+++ ++|.++|+ ..+.|+++. ++++.+.++.. ..
T Consensus 174 ~ia~~~gi~livD~a~a-~~~~-----~~~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~-------~~ 240 (394)
T PRK07050 174 AAARARGVVTAIDNTYS-AGLA-----FKPFEHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLA-------RM 240 (394)
T ss_pred HHHHHcCCEEEEECCcc-cccc-----cCHHHcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHH-------HH
Confidence 99999999999999986 2211 111112357664 67988764 235676665 66777766531 11
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc
Q 013204 308 GFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF 351 (447)
Q Consensus 308 ~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l 351 (447)
....+.+|..+..++..++-+. ...++..++..++.+.|++.
T Consensus 241 ~~G~~~~~~~a~l~lr~l~tl~--~Rl~~~~~~a~~la~~L~~~ 282 (394)
T PRK07050 241 RLGIGVSADDCSLVLRGLPSLQ--VRLAAHDRSALEVAEWLKAR 282 (394)
T ss_pred hcCCCCCHHHHHHHHcCCCcHH--HHHHHHHHHHHHHHHHHHhC
Confidence 1122445555443433332221 12344444555566666543
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.8e-12 Score=121.79 Aligned_cols=321 Identities=12% Similarity=0.032 Sum_probs=174.7
Q ss_pred CCHHHHHHHHHHHhcCCcccc----cCcC---CChHHHHHHHHHHHhcCcCCCCeEEEeCC-hhhHHHHHHHHHHHHHHh
Q 013204 50 SEPRLVAAATAQLNTLPFYHS----FWNR---TTKPSLDLAKELLEMFTASKMAKVFFTNS-GSEANDTQVKLVWYYNNA 121 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~----~~~~---~~~~~~~l~~~l~~~~~~~~~~~v~~~~s-GseA~~~Al~~~~~~~~~ 121 (447)
.++.|++|+.+.+.+....++ .... ..+...+..+.+++++.....++++|++| ||+|++.++..+..
T Consensus 10 ~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~---- 85 (355)
T cd00611 10 LPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLLG---- 85 (355)
T ss_pred CCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCC----
Confidence 579999999998854221111 1100 11445677788888875334568999976 99999999986631
Q ss_pred cCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccC-CCCCCChhHHHHHHHHHHHHHHHhh
Q 013204 122 LGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRY-AHPGETEEEYSTRLANNLEDLILKE 200 (447)
Q Consensus 122 ~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~le~~l~~~ 200 (447)
.+ ++..+| ..+.|..+........|.. +..+++++...+ +.+ +..+..+
T Consensus 86 ~~--~~~~~i-~~g~~~~~~~~~a~~~g~~------------~~~~~~~~~g~~~~~~------------~~~~~~~--- 135 (355)
T cd00611 86 DK--GTADYV-VTGAWSAKAAKEAKRYGGV------------VVIVAAKEEGKYTKIP------------DVETWDL--- 135 (355)
T ss_pred CC--CeEEEE-ECCHHHHHHHHHHHhcCCC------------cEEEecccccCCCCCC------------CHhhcCC---
Confidence 01 112222 2333322111111111111 111111110000 000 1111111
Q ss_pred CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeecccCCCccc
Q 013204 201 GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYM 280 (447)
Q Consensus 201 ~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~ 280 (447)
. +++.+|.+..+.+..|.+. .++++.||+++++|-+|+ +|.. +.-.+.+++ ++...-|.+ |+ .
T Consensus 136 ~-~~~~lV~~~h~~t~tG~~~---------~~i~~~~g~~~~VDa~qs-~g~~--~idv~~~~~--~~ss~~K~l-GP-~ 198 (355)
T cd00611 136 A-PDAAYVHYCSNETIHGVEF---------DEVPDTGGVPLVADMSSN-ILSR--PIDVSKFGV--IYAGAQKNL-GP-A 198 (355)
T ss_pred C-CCCCEEEEeCCcccccEEc---------ceecccCCCeEEEEcccc-ccCC--CCCHHHhCE--EEeeccccc-CC-C
Confidence 1 3455677777666666652 245566999999999998 5432 222333331 221233766 45 6
Q ss_pred ceeEEEeChhHHHHhhhccCCC---Cc-cCcCC-CCCCcHHHHHHHHHHHHHHhhh-c---HHHHHHHHHHHHHHhHhhc
Q 013204 281 PIGAILVSPEVSEVIHSQSNTL---GS-FSHGF-TYSGHPVSCAVAIEALKIYKER-N---IVEQVNKIAPKFQDGVKAF 351 (447)
Q Consensus 281 ~~g~~~~~~~~~~~~~~~~~~~---~~-~~~~~-t~~~~~~~~~aa~a~l~~~~~~-~---~~~~~~~~~~~l~~~L~~l 351 (447)
++|+++.++++.+.+....... .. ..... .++++..++.+..++++.+.+. + +.++.+++.+++++.|+++
T Consensus 199 G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~ 278 (355)
T cd00611 199 GVTVVIVRKDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNS 278 (355)
T ss_pred ceEEEEECHHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 7999999999887654321000 00 00111 2345556777777888887655 3 4566677788888888877
Q ss_pred cCC-Cceee-EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC---CEEEEecCCCCCHHHHHHHH
Q 013204 352 SDS-PIIGE-IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG---DNIMMSPPFIMSPEEVDELI 426 (447)
Q Consensus 352 ~~~-~~~~~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g---~~iR~~~~~~~t~e~i~~~~ 426 (447)
++. ..... ....+..+.+.+... .+...+...+.++|++..... +.+|+++...+|++||++++
T Consensus 279 ~gl~~~~~~~~~rs~~vvsf~~~~~-----------~l~~~~~~~~~r~G~~~~~~~~~~g~vR~S~~~~nt~edi~~l~ 347 (355)
T cd00611 279 NGFYRGPVDKRARSRMNVPFRLGKE-----------ELEKEFLKEAEAAGMIGLKGHRSVGGIRASIYNALSLEGVQALA 347 (355)
T ss_pred ccccccCCCHHHcCceEEEEEcCCh-----------hhhHHHHHHHHHCCCcccCCCcccCeEEEEccCCCCHHHHHHHH
Confidence 432 11111 011123344444331 012335467888999844331 56999999999999999999
Q ss_pred HHHHHH
Q 013204 427 SKYGKA 432 (447)
Q Consensus 427 ~~l~~~ 432 (447)
+.|++.
T Consensus 348 ~al~~~ 353 (355)
T cd00611 348 DFMKEF 353 (355)
T ss_pred HHHHHH
Confidence 999874
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.6e-12 Score=115.78 Aligned_cols=311 Identities=14% Similarity=0.156 Sum_probs=198.5
Q ss_pred hHHHHHHHHHHHhcCcCCCCeEEEeC-ChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccC
Q 013204 77 KPSLDLAKELLEMFTASKMAKVFFTN-SGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQ 155 (447)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~~v~~~~-sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 155 (447)
+...+|.++|+++ .+++.|.+-+ +|+++-.+.|.+++.|+..+|...|+.+|+ ..+.||..-......|..+
T Consensus 109 ~li~~Lq~~L~~I---TG~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LI-P~SAHGTNPASAam~G~~V--- 181 (496)
T COG1003 109 ELIYELQEWLKEI---TGMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLI-PDSAHGTNPASAAMAGFKV--- 181 (496)
T ss_pred HHHHHHHHHHHHh---cCCceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEe-eccccCCChhhHhhcCceE---
Confidence 3445677777777 4888888875 999999999999999999999776665555 5699998665555454332
Q ss_pred CCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHH
Q 013204 156 KFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVK 235 (447)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~ 235 (447)
..++|.+. +..++++|++.+. ++++++++...+.-| +. .+-+.+|+++.+
T Consensus 182 ---------V~V~~~~~-------------G~VDlddLk~k~~----~~~AalMiTnPsT~G--vF--E~~I~ei~~ivH 231 (496)
T COG1003 182 ---------VVVKCDEN-------------GNVDLDDLRAKAE----DNLAALMITNPSTLG--VF--EEDIREICEIVH 231 (496)
T ss_pred ---------EEEecCCC-------------CCccHHHHHHHhc----cceeEEEeccCcccc--cc--hhhHHHHHHHHH
Confidence 33444322 2234688888775 577777776554433 32 244889999999
Q ss_pred hcCCEEEEehh----hcCCCcccccc-ccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhc----cC------
Q 013204 236 KYDILFIADEV----ICAFGRLGTMF-GCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQ----SN------ 300 (447)
Q Consensus 236 ~~g~~li~DEv----~~g~g~~g~~~-~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~----~~------ 300 (447)
++|..|+.|-+ +.|..|.|..+ -..++++.- ||+-.-|||+.+.|-+..++++...+-.. ..
T Consensus 232 ~~Gg~vY~DGANlNA~vG~~rPGd~G~DV~HlNLHK---TF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~ 308 (496)
T COG1003 232 EAGGQVYYDGANLNAIVGLARPGDMGFDVVHLNLHK---TFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLD 308 (496)
T ss_pred HcCCEEEecCcchhhhhccccccccccceEEeeccc---ccccCCCCCCCCCCceehHhhccccCCCCcccCCCcccccc
Confidence 99999999965 33555555422 233333322 56666777777888888887776655320 00
Q ss_pred --CCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHH---HHHHHHHHHHHHhHhhccCCCceeeEeeee-eE--EEEEee
Q 013204 301 --TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIV---EQVNKIAPKFQDGVKAFSDSPIIGEIRGTG-LI--LGTEFA 372 (447)
Q Consensus 301 --~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~---~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g-~~--~~i~~~ 372 (447)
...+......+.++..-...+++-+..+..+++. +..--+..++..+|+.- ++++. .+.. .. +.++..
T Consensus 309 ~~~~~s~g~~~a~~Gs~~il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~~--y~~~y--~~~~~~~HE~ild~r 384 (496)
T COG1003 309 YDGKKSIGVSAAPYGSASILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKGY--YPVPY--TGENRVAHECILDAR 384 (496)
T ss_pred CCCCccceeeccccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhhc--Ccccc--CCCCcceeEEEeech
Confidence 0111222345556666666677777777666554 33334667888888752 22211 1111 00 112222
Q ss_pred ---cCCCCCCCCCCCcchHHHHHHHHHHcCceEE----e--eCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 013204 373 ---DNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR----V--SGDNIMMSPPFIMSPEEVDELISKYGKALKATEERV 440 (447)
Q Consensus 373 ---~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~----~--~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~ 440 (447)
..... -..++.++|++.|++.- | ..+.+.+-|.-.-+++++|+++++|.++.++.++..
T Consensus 385 ~l~~~~Gv---------~~~DvAKrLlD~GfHaPT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~~~~ 452 (496)
T COG1003 385 PLKKETGV---------RALDVAKRLLDYGFHAPTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIREEADAVP 452 (496)
T ss_pred HhHhhcCC---------cHHHHHHHHHhcCCCCCcccCccccccceeecCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 11111 25679999999999854 2 347799999999999999999999999998877643
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.5e-11 Score=115.28 Aligned_cols=351 Identities=15% Similarity=0.165 Sum_probs=186.5
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHH
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEAND 109 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~ 109 (447)
.....|||+.+-.++ +.+.++-...+..+.-.+ .-++...+|++.+++++ +.+.+++++||+.|..
T Consensus 35 ~~~~v~iDLltDsgT-------~aMs~~q~a~~~~GDe~y----ag~~s~~~lE~~va~~~---G~~~av~v~sGT~Al~ 100 (450)
T TIGR02618 35 NSEDVYIDLLTDSGT-------NAMSDKQWAGLMMGDEAY----AGSRNFYHLERTVRELY---GFKYVVPTHQGRGAEN 100 (450)
T ss_pred ccCceEEEcccCCCc-------HHHHHHHHHHhhhcchhh----cCCCcHHHHHHHHHHHH---CCCeEEEcCCHHHHHH
Confidence 445689999987654 556555233333222211 13445778999999997 6778999999999977
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCC--cceecCCCCcccCCCCCCChhHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAP--FVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
.+..+. -++ ++.| ..+.|...+.......|... .+.+.. .-...+.| ++ ..
T Consensus 101 ll~~l~-------l~p-GDeV--psn~~f~Tt~ahIe~~Gav~----vDi~~dea~~~~~~~p--~~-----------Gn 153 (450)
T TIGR02618 101 LLSQIA-------IKP-GDYV--PGNMYFTTTRYHQEKNGATF----VDIIIDEAHDAQLNIP--FK-----------GN 153 (450)
T ss_pred HHHHhC-------CCC-cCEE--CCceeHHHHHHHHHhCCeEE----EeeecccccccccCCC--CC-----------CC
Confidence 643221 112 2433 33333233333232222210 011000 00000000 00 11
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc---ccccCCC
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF---GCDKYSI 264 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~---~~~~~~~ 264 (447)
.+++.|++.+...+...++.|.++...+..|..+.+.+.++++.++|++||+.||.|-++. ++- +... .-.+.+.
T Consensus 154 iD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~-~gN-A~~I~~re~g~~~~ 231 (450)
T TIGR02618 154 VDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRC-VEN-AYFIKEREQGYEDK 231 (450)
T ss_pred cCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccch-hhC-hhhhhcccccccCC
Confidence 1247888888753333455666666555544467778899999999999999999998875 311 0000 0001111
Q ss_pred -----------CCCeeeecccCCCcccceeEEEe--ChhHHHHhhhccCCCCccCcCCCCCCcH-HHHHHHHHHHHHHhh
Q 013204 265 -----------KPDLVSFAKALSSAYMPIGAILV--SPEVSEVIHSQSNTLGSFSHGFTYSGHP-VSCAVAIEALKIYKE 330 (447)
Q Consensus 265 -----------~~d~v~~sK~l~gg~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~aa~a~l~~~~~ 330 (447)
..|.+++| +.--++.|+|.+++ ++++++.++......+.+ .++.+-. -.+.+...+|+...+
T Consensus 232 ~i~ei~~e~~~~aD~~~~S-~~Kd~~~~~GG~l~~~d~~l~~k~r~~~~~~eG~---~tyGgla~r~~~ala~gL~e~~~ 307 (450)
T TIGR02618 232 SIAEILKEMMSYADGCTMS-GKKDCLVNIGGFLCMNDDEMFQSAKELVVVFEGM---PSYGGLAGRDMEAMAIGIREAVD 307 (450)
T ss_pred CHHHHHHHHhccCcEEEEe-eccCCCCCCceEEEeCCHHHHHHHHHHhhhcCCc---cccCchhhhhHHHHHHHHHHhhh
Confidence 24665544 32111146555554 677888776431111111 1333211 123333334554444
Q ss_pred hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecC--CCCCCCCCCCcchHHHHHHH-HHHcCceEEeeC-
Q 013204 331 RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADN--KSPNEPFPPEWGIGAYFGAQ-CEKHGMLVRVSG- 406 (447)
Q Consensus 331 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~-l~~~Gi~~~~~g- 406 (447)
....++.....++|.+.|++. +.+++.. ..|..+.++...- .-+...|+ +..+.-. .++.||-....|
T Consensus 308 ~~y~~~r~~~a~~La~~L~~~-Gvpv~~p--~ggh~V~vda~~~lph~~~~~~p-----~~al~~~ly~~~gir~~e~g~ 379 (450)
T TIGR02618 308 YEYIEHRVKQVRYLGDKLKAA-GVPIVEP--VGGHAVFLDARRFLPHIPQDQFP-----AQSLAASIYVETGVRSMERGI 379 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCcccCC--CCcceEEEEhHHhCCCCChhhCh-----HHHHHHHHHHHhCccEEeecc
Confidence 455566666788999999887 5555433 3445555555431 11222222 2233333 345565443211
Q ss_pred -----------------CEEEEecCC-CCCHHHHHHHHHHHHHHHHH
Q 013204 407 -----------------DNIMMSPPF-IMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 407 -----------------~~iR~~~~~-~~t~e~i~~~~~~l~~~l~~ 435 (447)
+.+|+..|- .-|.+++|.+.++|....+.
T Consensus 380 ~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~ 426 (450)
T TIGR02618 380 VSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKH 426 (450)
T ss_pred eecccCCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence 458998774 45999999999998887765
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.9e-11 Score=116.83 Aligned_cols=300 Identities=14% Similarity=0.134 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHH-HhcCCCCcceEEEEcCCCccchhhhhcccCCccccCC
Q 013204 78 PSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYN-NALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQK 156 (447)
Q Consensus 78 ~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~-~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 156 (447)
...++++++++++ +.+++++++||++|+..|+..+.... ...+-.+++.||+..++|.+........+..+.
T Consensus 64 ~~~~fe~~lA~~~---g~~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv---- 136 (438)
T PRK15407 64 FNDAFEKKLAEFL---GVRYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPV---- 136 (438)
T ss_pred hHHHHHHHHHHHh---CCCeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEE----
Confidence 4678999999887 44579999999999999998653110 000112347899989998776544433222111
Q ss_pred CCCCCCcceecCCC-CcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHH
Q 013204 157 FDLPAPFVLHTDCP-HYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVK 235 (447)
Q Consensus 157 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~ 235 (447)
.++.. ..+. .+++++++.+. +++++|++.+..+ ... .+++|.++|+
T Consensus 137 ---------~vdvd~~~~~-------------id~~~le~~i~----~~tkaVi~~~~~G---~p~----dl~~I~~la~ 183 (438)
T PRK15407 137 ---------FVDVELPTYN-------------IDASLLEAAVS----PKTKAIMIAHTLG---NPF----DLAAVKAFCD 183 (438)
T ss_pred ---------EEecCCCcCC-------------cCHHHHHHHcC----cCCeEEEEeCCCC---Chh----hHHHHHHHHH
Confidence 11111 0000 01366776654 3566777776533 222 3899999999
Q ss_pred hcCCEEEEehhhcCCCccccccccccCCCCCCeeeec----ccCCCcccceeEEEeC-hhHHHHhhhccCCC--------
Q 013204 236 KYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA----KALSSAYMPIGAILVS-PEVSEVIHSQSNTL-------- 302 (447)
Q Consensus 236 ~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s----K~l~gg~~~~g~~~~~-~~~~~~~~~~~~~~-------- 302 (447)
+||++||.|++|+ +|..-.. ...|-..|+.+|| |.++.| ..|+++.+ +++.+.+......-
T Consensus 184 ~~gi~vIeDaa~a-~G~~~~g---~~~G~~gd~~~fSf~~~k~~~~g--eGG~l~t~d~~l~~~~~~~~~~G~~~~~~~~ 257 (438)
T PRK15407 184 KHNLWLIEDNCDA-LGSTYDG---RMTGTFGDIATLSFYPAHHITMG--EGGAVFTNDPLLKKIIESFRDWGRDCWCAPG 257 (438)
T ss_pred HCCCEEEEECccc-hhhhcCC---eeeeccCceEEEeCCCCCCcccc--CceEEEECCHHHHHHHHHHHHhCcccccccc
Confidence 9999999999997 4322111 1122224777765 667654 23677765 44554433211000
Q ss_pred ---------------------Ccc---CcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccC-CCce
Q 013204 303 ---------------------GSF---SHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD-SPII 357 (447)
Q Consensus 303 ---------------------~~~---~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~-~~~~ 357 (447)
..+ ..+..+..+.+.++.+++-|+.+ ++..++.+++.+++.+.|..+.. ...+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~rmsel~AAig~~qL~~l--~~~~~~R~~~a~~y~~~L~~~~~~~~~~ 335 (438)
T PRK15407 258 CDNTCGKRFGWQLGELPFGYDHKYTYSHLGYNLKITDMQAAIGLAQLEKL--PGFIEARKANFAYLKEGLASLEDFLILP 335 (438)
T ss_pred cccccccccccccccccccccccccccccccccCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCccccC
Confidence 000 12334445667777777777655 44567777777888888876531 1111
Q ss_pred eeEee-eee--EEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-------------------C---------
Q 013204 358 GEIRG-TGL--ILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-------------------G--------- 406 (447)
Q Consensus 358 ~~~~~-~g~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------------------g--------- 406 (447)
....+ ... .+.+.+...... ....+.+.|.++||-+... +
T Consensus 336 ~~~~~~~~~~~~~~i~~~~~~~~---------~Rd~l~~~L~~~GI~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ae~~~ 406 (438)
T PRK15407 336 EATPNSDPSWFGFPITVKEDAGF---------TRVELVKYLEENKIGTRLLFAGNLTRQPYFKGVKYRVVGELTNTDRIM 406 (438)
T ss_pred cCCCCCeeEEEEEEEEECCcCCC---------CHHHHHHHHHHCCCCccccCCCccccChhhhhcCCCCCCCChHHHHHH
Confidence 11011 112 223333321100 1356888999999865411 0
Q ss_pred -CEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 407 -DNIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 407 -~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
..+-+-.+...|+++++++++.|+++++
T Consensus 407 ~~~l~LP~~~~l~~~~v~~i~~~i~~~~~ 435 (438)
T PRK15407 407 NDTFWIGVYPGLTEEMLDYVIEKIEEFFG 435 (438)
T ss_pred hCeEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 1233333455799999999999998874
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.5e-12 Score=124.44 Aligned_cols=211 Identities=16% Similarity=0.176 Sum_probs=128.6
Q ss_pred ChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh---hcccCCcc
Q 013204 76 TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA---ASLSGLPA 152 (447)
Q Consensus 76 ~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~---~~~~~~~~ 152 (447)
.+...+++++++++. +.+.+++++||..|+..++.++ ..+++||+.++.|.+..... +...|...
T Consensus 132 npt~~aLE~~lA~le---g~e~ai~~~SG~aAi~~il~ll---------~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v 199 (464)
T PLN02509 132 NPTRDALESLLAKLD---KADRAFCFTSGMAALSAVTHLI---------KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVV 199 (464)
T ss_pred CHHHHHHHHHHHHHh---CCCEEEEeCcHHHHHHHHHHHh---------CCCCEEEEcCCchhhHHHHHHHHHHHCCeEE
Confidence 356788999998885 4557788899998876555432 33578999899987753111 11111110
Q ss_pred ccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHH
Q 013204 153 LHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQA 232 (447)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~ 232 (447)
..++.. +++++++.+. +++++|++|.+.+..|.+.+ +++|++
T Consensus 200 ------------~~vd~~------------------d~e~l~~ai~----~~TklV~lesPsNPtG~i~D----l~~I~~ 241 (464)
T PLN02509 200 ------------KRVNTT------------------NLDEVAAAIG----PQTKLVWLESPTNPRQQISD----IRKIAE 241 (464)
T ss_pred ------------EEeCCC------------------CHHHHHHhCC----cCCeEEEEECCCCCCCCHHH----HHHHHH
Confidence 111110 1256666553 34678888888777776654 999999
Q ss_pred HHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeee--cccCCCc-ccceeEEEeC-hhHHHHhhhccCCCCccCcC
Q 013204 233 VVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF--AKALSSA-YMPIGAILVS-PEVSEVIHSQSNTLGSFSHG 308 (447)
Q Consensus 233 l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~--sK~l~gg-~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~ 308 (447)
+|++||+++|+|+++. .+..+.+ .+...|++++ +|.++|. ..-.|+++++ +.+.+.+.... ..
T Consensus 242 lAk~~g~~lIVD~A~a-~~~~~~p-----l~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~-------~~ 308 (464)
T PLN02509 242 MAHAQGALVLVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQ-------NS 308 (464)
T ss_pred HHHHcCCEEEEECCcc-ccccCCh-----hhcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHH-------Hh
Confidence 9999999999999985 3232222 2234688764 6999873 2224566654 44444432110 00
Q ss_pred CCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc
Q 013204 309 FTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF 351 (447)
Q Consensus 309 ~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l 351 (447)
.....+|..++.++..|+.+. ...++..++.+++.+.|++.
T Consensus 309 ~g~~l~p~~A~l~lr~L~tL~--~R~~r~~~nA~~la~~L~~~ 349 (464)
T PLN02509 309 EGSGLAPFDCWLCLRGIKTMA--LRIEKQQENARKIAMYLSSH 349 (464)
T ss_pred cCCCcCHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHhcC
Confidence 112246777777777777553 34566667777777777654
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.1e-12 Score=125.32 Aligned_cols=158 Identities=20% Similarity=0.209 Sum_probs=106.1
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh---hcccCCc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA---ASLSGLP 151 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~---~~~~~~~ 151 (447)
..+...+|+++++++. +.+.+++++||+.|+..+++.+. ..+++||+..+.|++..... +...|..
T Consensus 61 ~~p~~~~le~~lA~l~---g~~~al~~~SG~~Ai~~al~all--------~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~ 129 (427)
T PRK05994 61 TNPTNAVLEERVAALE---GGTAALAVASGHAAQFLVFHTLL--------QPGDEFIAARKLYGGSINQFGHAFKSFGWQ 129 (427)
T ss_pred CCccHHHHHHHHHHHh---CCCcEEEEcCHHHHHHHHHHHHh--------CCCCEEEEecCcchhHHHHHHHHHHhcCcE
Confidence 3455778999999886 33468899999999999998664 33578999899998763211 1111110
Q ss_pred cccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHH
Q 013204 152 ALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 231 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~ 231 (447)
+..++.. +.+++++.+. +++++|++|.+++..|.+.+ +++|.
T Consensus 130 ------------v~~vd~~------------------d~~~l~~ai~----~~tklV~vesp~NptG~v~d----l~~I~ 171 (427)
T PRK05994 130 ------------VRWADAD------------------DPASFERAIT----PRTKAIFIESIANPGGTVTD----IAAIA 171 (427)
T ss_pred ------------EEEECCC------------------CHHHHHHhcC----cCCeEEEEECCCCCCCeecC----HHHHH
Confidence 1112211 1366676664 35678888888888887776 99999
Q ss_pred HHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCcccceeEEEe
Q 013204 232 AVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSAYMPIGAILV 287 (447)
Q Consensus 232 ~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg~~~~g~~~~ 287 (447)
++|++||+++|+|++++ .+. ........+|+++ ++|.++|.+-.+|.++.
T Consensus 172 ~la~~~gi~livD~a~a-~~~-----~~~pl~~gaDivv~S~tK~lgg~~~~~gG~v~ 223 (427)
T PRK05994 172 EVAHRAGLPLIVDNTLA-SPY-----LIRPIEHGADIVVHSLTKFLGGHGNSMGGIIV 223 (427)
T ss_pred HHHHHcCCEEEEECCcc-ccc-----cCCccccCCcEEEEcCccccCCCCCcEEEEEE
Confidence 99999999999999986 211 1223345688876 56988873235665554
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.5e-12 Score=125.03 Aligned_cols=165 Identities=19% Similarity=0.233 Sum_probs=104.7
Q ss_pred ChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh---hcccCCcc
Q 013204 76 TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA---ASLSGLPA 152 (447)
Q Consensus 76 ~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~---~~~~~~~~ 152 (447)
.+...++++++++++. .+.+++++||+.|+..++.++ ..+++||+.++.|.+..... ....|..
T Consensus 46 ~p~~~~le~~la~l~g---~~~~l~~~sG~~al~~~l~ll---------~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~- 112 (378)
T TIGR01329 46 NPTRTALESLLAKLDK---ADRAFAFSSGMAALDVITRLL---------NNGDEIIAGDDLYGGTDRLLTQVVPRSGVV- 112 (378)
T ss_pred ChHHHHHHHHHHHHhC---CCcEEEECCHHHHHHHHHHHh---------CCCCEEEEcCCCchHHHHHHHHHHHHcCcE-
Confidence 3457789999998863 357888899999888766532 33467888888886653211 1111111
Q ss_pred ccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHH
Q 013204 153 LHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQA 232 (447)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~ 232 (447)
+..++.. +.+++++.+. +++++|++|.+.+..|.+.+ +++|.+
T Consensus 113 -----------v~~vd~~------------------d~~~le~~i~----~~tklv~le~psnptg~v~d----l~~I~~ 155 (378)
T TIGR01329 113 -----------VVHVDTT------------------DLDKVKAALG----PKTKLVLLESPTNPLQKIVD----IRKISE 155 (378)
T ss_pred -----------EEEeCCC------------------CHHHHHHhcC----cCceEEEEECCCCCCCeeec----HHHHHH
Confidence 1112211 1366776664 35678888887777777766 999999
Q ss_pred HHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeee--cccCCCc-ccceeEEEeC-hhHHHHhh
Q 013204 233 VVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF--AKALSSA-YMPIGAILVS-PEVSEVIH 296 (447)
Q Consensus 233 l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~--sK~l~gg-~~~~g~~~~~-~~~~~~~~ 296 (447)
+|++||+++|+|+++. .+....+ .....|++++ +|.++|+ ....|+++++ +++.+.+.
T Consensus 156 la~~~g~~vivD~a~~-~~~~~~~-----l~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~ 217 (378)
T TIGR01329 156 MAHAQNALVVVDNTMM-SPLLCNP-----LELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVY 217 (378)
T ss_pred HHHHcCCEEEEECCCc-ccccCCh-----hhcCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHH
Confidence 9999999999999974 2211111 1224687765 5988873 2346778775 45545554
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-10 Score=112.94 Aligned_cols=296 Identities=13% Similarity=0.061 Sum_probs=174.9
Q ss_pred ChHHHHHHHHHHHhcCcCC-CCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc
Q 013204 76 TKPSLDLAKELLEMFTASK-MAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154 (447)
Q Consensus 76 ~~~~~~l~~~l~~~~~~~~-~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 154 (447)
.+...++.+++++++...+ ...-++++||||||..|+.++|.+. .+.+++.+..-|-+..-+...-|..
T Consensus 132 ~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~-------~~~vvy~S~~aH~Sv~KAa~llgi~--- 201 (470)
T PLN02263 132 RQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVF-------PDGILYASRESHYSVFKAARMYRME--- 201 (470)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhc-------CCcEEEEcCCccHHHHHHHHhcCCc---
Confidence 3445566677777764211 1257899999999999999998652 1346777778887765555444332
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
...++....++ .+.++|++.+.+.. ..+.+|+........|.+-| +++|.++|
T Consensus 202 ---------~~~Vp~d~~g~-------------mD~~aL~~aI~~d~-~~P~iVvataGTT~~GAiDp----i~eIa~i~ 254 (470)
T PLN02263 202 ---------CVKVDTLVSGE-------------IDCADFKAKLLANK-DKPAIINVNIGTTVKGAVDD----LDLVIKTL 254 (470)
T ss_pred ---------ceEeccCCCCc-------------CcHHHHHHHHHhCC-CCcEEEEEEecCCCCcCCCC----HHHHHHHH
Confidence 12233322111 22478888776432 23455555555555677766 99999999
Q ss_pred HhcCC-----EEEEehhhcCCCccccccccc--cC--CCCCCeeeec--ccCCCcccceeEEEeChhHHHHhhhccCCCC
Q 013204 235 KKYDI-----LFIADEVICAFGRLGTMFGCD--KY--SIKPDLVSFA--KALSSAYMPIGAILVSPEVSEVIHSQSNTLG 303 (447)
Q Consensus 235 ~~~g~-----~li~DEv~~g~g~~g~~~~~~--~~--~~~~d~v~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~ 303 (447)
++||+ +|++|-++.|+-. ++.-. .+ ....|-++++ |.++.+ ++.|+++.+++..+.+........
T Consensus 255 ~~~g~~~~~iwlHVDAA~GG~~l---Pf~~~~~~~df~~~vDSIsvD~HK~l~~P-~~cgvll~R~~~~~~~~~~~~Yl~ 330 (470)
T PLN02263 255 EECGFSQDRFYIHCDGALFGLMM---PFVKRAPKVTFKKPIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSNVEYLA 330 (470)
T ss_pred HHcCCccCCeeEEEeccchhhHh---hhcccccccCCCcCccEEEECCccccCCC-cCEEEEEEehhhHhhhccChHhhC
Confidence 99997 9999999987622 11100 01 1236667765 777777 699999998776554432211111
Q ss_pred ccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHH---HHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCC
Q 013204 304 SFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQ---VNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEP 380 (447)
Q Consensus 304 ~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~---~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~ 380 (447)
....+...+.+.......+.+|+.+..+++.+. ..++.+++.+.|++. ++..........+.+ ..+.
T Consensus 331 ~~d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~---g~~~~~~p~s~~V~f--~~p~----- 400 (470)
T PLN02263 331 SRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREA---GISAMLNELSSTVVF--ERPK----- 400 (470)
T ss_pred CCCCCcCCCCCcHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC---CCeEEeCCCceEEEE--ecCc-----
Confidence 101011112222234556677776666665544 444666777777665 322223333333333 3221
Q ss_pred CCCCcchHHHHHHHHHHcCceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 381 FPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 381 ~~~~~~~~~~~~~~l~~~Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
..+..+|..+...++.++++...-++.+.+|++++-|++..+
T Consensus 401 ------------~~~~~~gW~L~~~~~~~Hivvmphv~~~~id~fi~DL~~~~~ 442 (470)
T PLN02263 401 ------------DEEFVRRWQLACQGNIAHVVVMPSVTIEKLDYFLKELVEKRS 442 (470)
T ss_pred ------------hHHhhcceEEccCCCcEEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 112346777766666677776665789999999999988776
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.6e-12 Score=125.54 Aligned_cols=158 Identities=18% Similarity=0.194 Sum_probs=103.9
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh---hcccCCc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA---ASLSGLP 151 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~---~~~~~~~ 151 (447)
..+....|++.++++. +.+.+++++||+.|+..++..+. ..+++|++..+.|++..... +...|..
T Consensus 62 ~~p~~~~Le~~lA~le---g~~~al~~~sG~~Ai~~al~~ll--------~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~ 130 (431)
T PRK08248 62 MNPTTDVFEKRIAALE---GGIGALAVSSGQAAITYSILNIA--------SAGDEIVSSSSLYGGTYNLFAHTLPKLGIT 130 (431)
T ss_pred CCchHHHHHHHHHHHh---CCCcEEEECCHHHHHHHHHHHHh--------CCCCEEEEccCchhhHHHHHHHHHHhCCEE
Confidence 3455778999999886 34578999999999999997653 34578888888887753221 1111111
Q ss_pred cccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHH
Q 013204 152 ALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 231 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~ 231 (447)
+..++.. +++++++.+. +++++|+++...+..|.+.+ +++|.
T Consensus 131 ------------v~~vd~~------------------d~e~l~~ai~----~~tklV~l~sp~NPtG~v~d----i~~I~ 172 (431)
T PRK08248 131 ------------VKFVDPS------------------DPENFEAAIT----DKTKALFAETIGNPKGDVLD----IEAVA 172 (431)
T ss_pred ------------EEEECCC------------------CHHHHHHhcC----CCCeEEEEECCCCCCCcccC----HHHHH
Confidence 1112211 1366776664 24667777776666777776 89999
Q ss_pred HHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCcccceeEEEe
Q 013204 232 AVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSAYMPIGAILV 287 (447)
Q Consensus 232 ~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg~~~~g~~~~ 287 (447)
++|++||+++|+|++++ .+.. ........|+++ ++|.++|.+..+|+++.
T Consensus 173 ~la~~~gi~vIvD~t~a-~~~~-----~~pl~~gaDivv~S~tK~lgg~g~~~Gg~v~ 224 (431)
T PRK08248 173 AIAHEHGIPLIVDNTFA-SPYL-----LRPIEHGADIVVHSATKFIGGHGTSIGGVIV 224 (431)
T ss_pred HHHHHcCCEEEEeCCCC-cccc-----CChhHcCCCEEEEcCccccCCCCCceEEEEE
Confidence 99999999999999975 1111 111123468775 56999885567777665
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.7e-10 Score=114.13 Aligned_cols=329 Identities=12% Similarity=0.067 Sum_probs=183.0
Q ss_pred hHHHHHHHHHHHhcCcCC------CCeEEEeCChhhHHHHHHHHHHHHHHh-cCCCCc-ceEEEEcCCCccchhhhhccc
Q 013204 77 KPSLDLAKELLEMFTASK------MAKVFFTNSGSEANDTQVKLVWYYNNA-LGRPNK-KKFIARQKSYHGSTLIAASLS 148 (447)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~------~~~v~~~~sGseA~~~Al~~~~~~~~~-~~~~~~-~~vi~~~~~yhg~~~~~~~~~ 148 (447)
....++.+++++++.... ...-+|++|||+||..||.++|..... .|..+. +-+++.+...|-+..-+...-
T Consensus 170 ~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~KAa~il 249 (539)
T PLN02590 170 ELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFRKACLIG 249 (539)
T ss_pred HHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHHHHHHHc
Confidence 344455566666663211 134688999999999999999865332 122222 335555666677765555444
Q ss_pred CCccccCCCCCCCCcceecCCCC--cccCCCCCCChhHHHHHHHHHHHHHHHhh--CCCcEEEEEEccccCCCCCccCCh
Q 013204 149 GLPALHQKFDLPAPFVLHTDCPH--YWRYAHPGETEEEYSTRLANNLEDLILKE--GPETIAAFIAEPVIGAGGVIPPPA 224 (447)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~a~vi~epv~~~~G~~~~~~ 224 (447)
|.. ...+..++.+. .++ .+.+.|++.+.+. ....+.+|+...-....|.+-|
T Consensus 250 Glg---------~~~vr~Vp~d~~~~~~-------------md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDp-- 305 (539)
T PLN02590 250 GIH---------EENIRLLKTDSSTNYG-------------MPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDP-- 305 (539)
T ss_pred CCC---------cccEEEEeCCCCCCCc-------------CCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCC--
Confidence 321 11122333321 111 1147777777542 1233455565555555677766
Q ss_pred hHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCC-CCCeeeec--ccCCCcccceeEEEeChh--HHHHhhhcc
Q 013204 225 TYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSI-KPDLVSFA--KALSSAYMPIGAILVSPE--VSEVIHSQS 299 (447)
Q Consensus 225 ~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~-~~d~v~~s--K~l~gg~~~~g~~~~~~~--~~~~~~~~~ 299 (447)
|++|.++|++||++|++|-++.|+...-...-.-..|+ ..|-+++. |.+..+ ++.|+++.+.. +.+.+....
T Consensus 306 --l~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p-~~cg~llvr~~~~l~~a~~~~~ 382 (539)
T PLN02590 306 --LVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFAN-QTCSPLWVKDRYSLIDALKTNP 382 (539)
T ss_pred --HHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcC-cCEEEEEecCHHHHHHHhhcCH
Confidence 99999999999999999999987643222111112355 37888765 888777 68888888753 333332111
Q ss_pred CCCC----------ccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHH---HHHHHHHHhHhhccCCCceeeEeeeeeE
Q 013204 300 NTLG----------SFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVN---KIAPKFQDGVKAFSDSPIIGEIRGTGLI 366 (447)
Q Consensus 300 ~~~~----------~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~---~~~~~l~~~L~~l~~~~~~~~~~~~g~~ 366 (447)
.... .+.+.+.-..-.+.....+.+|+.+..+++.+.++ ++.+++.+.|++.++..++.. ..-.+
T Consensus 383 ~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~--~~l~i 460 (539)
T PLN02590 383 EYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTT--RYFSL 460 (539)
T ss_pred HHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC--CceEE
Confidence 0000 00110111112345556667777766666554444 466667666665433333222 12223
Q ss_pred EEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee----C-CEEEEec-CCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 367 LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS----G-DNIMMSP-PFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 367 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----g-~~iR~~~-~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
+.+.+....... .....+...+.+++.+.|.+.... | ..+|++. +...+++||+.+++.|.+...++.
T Consensus 461 VcFr~~~~~~~~---~~~~~ln~~l~~~l~~~G~~~vs~t~~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~~~ 534 (539)
T PLN02590 461 VCFRLAPVDGDE---DQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASKFT 534 (539)
T ss_pred EEEEecCCCCCH---HHHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 333333211000 001123456777888888664432 2 3489875 356789999999999998876654
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-11 Score=119.73 Aligned_cols=166 Identities=17% Similarity=0.137 Sum_probs=103.4
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh---hcccCCc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA---ASLSGLP 151 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~---~~~~~~~ 151 (447)
..+...+++++++++.. .+..+.++||+.|+..++..+ ..+++||+.++.|++..... +...|..
T Consensus 52 ~~p~~~~le~~lA~l~g---~~~~v~~~sG~~ai~~~l~~l---------~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~ 119 (390)
T PRK08064 52 GNPTREALEDIIAELEG---GTKGFAFASGMAAISTAFLLL---------SKGDHVLISEDVYGGTYRMITEVLSRFGIE 119 (390)
T ss_pred CChhHHHHHHHHHHHhC---CCCeEEECCHHHHHHHHHHHh---------CCCCEEEEccCccchHHHHHHHHHHHcCCE
Confidence 34567788999998863 234566788999998888633 33578999899887754221 1111111
Q ss_pred cccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHH
Q 013204 152 ALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 231 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~ 231 (447)
+..++.. +++++++.+. +++++|++|..++..|.+.+ +++|.
T Consensus 120 ------------v~~v~~~------------------d~~~l~~~l~----~~tklV~l~~p~NptG~~~d----l~~I~ 161 (390)
T PRK08064 120 ------------HTFVDMT------------------NLEEVAQNIK----PNTKLFYVETPSNPLLKVTD----IRGVV 161 (390)
T ss_pred ------------EEEECCC------------------CHHHHHHhcC----CCceEEEEECCCCCCcEecc----HHHHH
Confidence 1112211 0255666553 34567777777666676765 99999
Q ss_pred HHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCcc-cceeEEEe-ChhHHHHhh
Q 013204 232 AVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSAY-MPIGAILV-SPEVSEVIH 296 (447)
Q Consensus 232 ~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg~-~~~g~~~~-~~~~~~~~~ 296 (447)
++|+++|+++|+|++|..+ ....+ .....|+++ ++|.++|.. .-.|+++. ++++++.+.
T Consensus 162 ~la~~~g~~vvvD~a~~~~-~~~~~-----~~~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~ 224 (390)
T PRK08064 162 KLAKAIGCLTFVDNTFLTP-LLQKP-----LDLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLY 224 (390)
T ss_pred HHHHHcCCEEEEECCCCcc-cccCc-----hhhCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHH
Confidence 9999999999999998632 11111 122357775 569887631 12455555 467777765
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.1e-10 Score=111.26 Aligned_cols=318 Identities=14% Similarity=0.137 Sum_probs=172.3
Q ss_pred CCHHHHHHHHHHHhcCCcc-cccC-cCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCc
Q 013204 50 SEPRLVAAATAQLNTLPFY-HSFW-NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNK 127 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~-~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~ 127 (447)
-++++.+++.+.+..+... +... +...+....+++.+++++ +.+.+++++||+.|+..++..+ .++
T Consensus 98 l~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~---Gae~a~vv~sgtaAl~l~l~~l---------~~G 165 (464)
T PRK04311 98 LSEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALT---GAEDALVVNNNAAAVLLALNAL---------AAG 165 (464)
T ss_pred CCHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHh---CCCeEEEECCHHHHHHHHHHHh---------CCC
Confidence 4689999999888754211 0110 112344567888888886 4457899999999999888653 234
Q ss_pred ceEEEEcCC-Cc-cchh---hhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCC
Q 013204 128 KKFIARQKS-YH-GSTL---IAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGP 202 (447)
Q Consensus 128 ~~vi~~~~~-yh-g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~ 202 (447)
++||+.++. || |.+. ..+...|.. +..++..+. . +++++++.+. +
T Consensus 166 deVIvs~~e~~~~ggs~~i~~~~~~~G~~------------l~~v~~~~~--------t-------~~~dle~aI~---~ 215 (464)
T PRK04311 166 KEVIVSRGELVEIGGAFRIPDVMRQAGAR------------LVEVGTTNR--------T-------HLRDYEQAIN---E 215 (464)
T ss_pred CEEEEcchhhhhcCcchhhHHHHHHCCcE------------EEEECCCCC--------C-------CHHHHHHhcC---c
Confidence 677776543 32 2111 111111211 011111100 0 1366777664 3
Q ss_pred CcEEEEEEcc-ccCC-CC--CccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc---c---ccccccccCCCCCCeeeec
Q 013204 203 ETIAAFIAEP-VIGA-GG--VIPPPATYFEKVQAVVKKYDILFIADEVICAFGR---L---GTMFGCDKYSIKPDLVSFA 272 (447)
Q Consensus 203 ~~~a~vi~ep-v~~~-~G--~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~---~---g~~~~~~~~~~~~d~v~~s 272 (447)
++++|+++. .+.. .| ..++ +++|.++|++||+++|+|....-++- . +.+...+......|++++|
T Consensus 216 -~TklV~~vh~sN~~i~G~~~~~d----l~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fS 290 (464)
T PRK04311 216 -NTALLLKVHTSNYRIEGFTKEVS----LAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFS 290 (464)
T ss_pred -cCeEEEEEcCCCccccccCCcCC----HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCcEEEec
Confidence 345555554 4432 34 2344 99999999999999999984211110 1 1111112222457999988
Q ss_pred --ccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh-hc-H------------HHH
Q 013204 273 --KALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE-RN-I------------VEQ 336 (447)
Q Consensus 273 --K~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-~~-~------------~~~ 336 (447)
|.++|+ ..|++++++++++.+.... + .-.+...-+.+++..++|...-. .+ + .++
T Consensus 291 g~K~LgGp--~~G~i~g~~~li~~l~~~~-----~--~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~ 361 (464)
T PRK04311 291 GDKLLGGP--QAGIIVGKKELIARLKKHP-----L--KRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEE 361 (464)
T ss_pred CcccccCC--ceEEEEEcHHHHHHHhhch-----h--HHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHH
Confidence 888875 4788999999888775310 0 01111222333333444442211 10 1 145
Q ss_pred HHHHHHHHHHhHhhccCCCceeeE-e-----eeeeE-------EEEEeecCCCCCCCCCCCcchHHHHHHHHHH--cCce
Q 013204 337 VNKIAPKFQDGVKAFSDSPIIGEI-R-----GTGLI-------LGTEFADNKSPNEPFPPEWGIGAYFGAQCEK--HGML 401 (447)
Q Consensus 337 ~~~~~~~l~~~L~~l~~~~~~~~~-~-----~~g~~-------~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~Gi~ 401 (447)
..++.+.+.+.|+..........+ . |-|.+ +.+.+.... .....+.++|++ ..|+
T Consensus 362 ~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~~~----------~~~~~l~~~lr~~~~~i~ 431 (464)
T PRK04311 362 LRARAERLAAALKAALGAAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTPKD----------RSLEALAARLRLLPPPVI 431 (464)
T ss_pred HHHHHHHHHHHHHhccCCCeeEEEEEccCccCCCCCcCCCCCeEEEEEeCCC----------CCHHHHHHHHhcCCCCEE
Confidence 555666777776654111111111 1 11111 122222111 014557777775 4577
Q ss_pred EEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 402 VRVSGDNIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 402 ~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
.+...+.+.+-+. ...++|++.++++|.+.+.
T Consensus 432 ~r~~~~~~~ld~r-~~~~~~~~~~~~~~~~~~~ 463 (464)
T PRK04311 432 GRIEDGRLLLDLR-TLEEEDEERLAAALLEALN 463 (464)
T ss_pred EEEECCEEEEEeC-cCCHHHHHHHHHHHHHHhh
Confidence 7766677888865 6788999999999988753
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.9e-11 Score=117.32 Aligned_cols=302 Identities=16% Similarity=0.122 Sum_probs=162.3
Q ss_pred eEEEeCChhhHHHHHHHHHHHHHHhc-CC----------------CCcceEEEEcCCCccchhhhhcccCCccccCCCCC
Q 013204 97 KVFFTNSGSEANDTQVKLVWYYNNAL-GR----------------PNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDL 159 (447)
Q Consensus 97 ~v~~~~sGseA~~~Al~~~~~~~~~~-~~----------------~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 159 (447)
.-.|++|||+||..|+.++|...... +. ..++.+|+.+..-|-+..-+...-|..
T Consensus 161 ~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg-------- 232 (522)
T TIGR03799 161 LGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAADVLGIG-------- 232 (522)
T ss_pred CeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccCCceEEEECCCchHHHHHHHHHcCCC--------
Confidence 36889999999999999998653211 00 012345666777777765443322221
Q ss_pred CCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhC--CCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhc
Q 013204 160 PAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEG--PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKY 237 (447)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~--~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~ 237 (447)
...+..+++...++ .++++|++.+.... ...+.+|+........|.+.| +++|.++|++|
T Consensus 233 -~~~v~~vp~d~~g~-------------~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDp----l~eIa~i~~~~ 294 (522)
T TIGR03799 233 -RDNLIAIKTDANNR-------------IDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDP----LDEMADIAQEL 294 (522)
T ss_pred -cccEEEEEeCCCCc-------------CCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCC----HHHHHHHHHHc
Confidence 01122333322211 12477877775421 122334444444556788888 99999999999
Q ss_pred CCEEEEehhhcCCCccccccccccCCC-CCCeeeec--ccCCCcccceeEEEeC-hhHHHHhhhccCCC---CccC-cCC
Q 013204 238 DILFIADEVICAFGRLGTMFGCDKYSI-KPDLVSFA--KALSSAYMPIGAILVS-PEVSEVIHSQSNTL---GSFS-HGF 309 (447)
Q Consensus 238 g~~li~DEv~~g~g~~g~~~~~~~~~~-~~d~v~~s--K~l~gg~~~~g~~~~~-~~~~~~~~~~~~~~---~~~~-~~~ 309 (447)
|+++++|-+|.|....-..+-....++ ..|.++++ |.+.++ .++|+++.+ ++..+.+....... +... ...
T Consensus 295 g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P-~g~G~llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~ 373 (522)
T TIGR03799 295 GCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVP-MGAGMVLFKDPALMSAIEHHAEYILRKGSKDLGSH 373 (522)
T ss_pred CCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcC-cccEEEEEeCHHHHHHhccCcchhcCCCCCccccc
Confidence 999999999875422111111112355 58999987 878877 688998876 45555543321110 0000 001
Q ss_pred CC--CCcHHHHHHHHHHHHHHhhhc---HHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCC----
Q 013204 310 TY--SGHPVSCAVAIEALKIYKERN---IVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEP---- 380 (447)
Q Consensus 310 t~--~~~~~~~~aa~a~l~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~---- 380 (447)
++ +.+..+ ...+++++.+...+ +.++..++.+++.+.|++.++..++.. ..-.++.+.+.........
T Consensus 374 ~legsR~~~a-l~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~--p~l~iv~Fr~~p~~~~~~l~~~~ 450 (522)
T TIGR03799 374 TLEGSRPGMA-MLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFELVTE--PELCLLTYRYVPEEVQQALAKAD 450 (522)
T ss_pred eeecCcchHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEecC--CCccEEEEEEeChhhcccccccc
Confidence 11 112222 23566777666544 455666677777777766543333321 1122333333211100000
Q ss_pred ---CC----CCcchHHHHHHHHHHcCceEEee---------C---CEEEEec-CCCCCHHHHHHHHHH
Q 013204 381 ---FP----PEWGIGAYFGAQCEKHGMLVRVS---------G---DNIMMSP-PFIMSPEEVDELISK 428 (447)
Q Consensus 381 ---~~----~~~~~~~~~~~~l~~~Gi~~~~~---------g---~~iR~~~-~~~~t~e~i~~~~~~ 428 (447)
.. ....+...+.+++.+.|...... | ..+|++. +...|+++|+.+++.
T Consensus 451 ~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~~~~np~tt~~~i~~~l~~ 518 (522)
T TIGR03799 451 EEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRVVLANPLTTHEILQDILDE 518 (522)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEEEecCCCCCHHHHHHHHHH
Confidence 00 00123456777777788665431 1 2489875 345788888876653
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.1e-12 Score=108.11 Aligned_cols=276 Identities=15% Similarity=0.208 Sum_probs=158.7
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCc
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHY 172 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
--.+.++...|..|.++..+|.. ..+|+++|+...|+|.=++..+.. .+.. +..++....
T Consensus 84 Lt~dnic~GvGsDE~ID~iiR~~-------c~PGkeKIl~cPPtysMY~v~A~i-Nd~e------------Vvkvpl~pd 143 (375)
T KOG0633|consen 84 LTSDNICVGVGSDELIDLIIRCV-------CDPGKEKILDCPPTYSMYVVDAAI-NDAE------------VVKVPLNPD 143 (375)
T ss_pred CCccceEEecCcHHHHHHHHhhe-------ecCCccceeecCCcceeEEEEeec-CCce------------EEEecCCCC
Confidence 34578999999999999999976 347889999999999555432221 1111 111221111
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc
Q 013204 173 WRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252 (447)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~ 252 (447)
|. .+ .+.+-+.+.. ...++++.+....+..|.+. ..+.++.|.+.-. +.++++||+|-.|
T Consensus 144 F~-----ln--------vdai~evl~~--ds~iK~~F~tSPgNPtg~~i-k~~di~KiLe~p~--nglVVvDEAYidF-- 203 (375)
T KOG0633|consen 144 FS-----LN--------VDAIAEVLEL--DSKIKCIFLTSPGNPTGSII-KEDDILKILEMPD--NGLVVVDEAYIDF-- 203 (375)
T ss_pred cc-----cc--------HHHHHHHHhc--cccceEEEEcCCCCCCcccc-cHHHHHHHHhCCC--CcEEEEeeeeEee--
Confidence 11 00 1334444443 12455555544444444444 4344544544333 7899999999877
Q ss_pred cccccccccCCCCCCee---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh
Q 013204 253 LGTMFGCDKYSIKPDLV---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK 329 (447)
Q Consensus 253 ~g~~~~~~~~~~~~d~v---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~ 329 (447)
.|......+..--|+++ |+||++|-.+.++|+.+.+.++++.++... .++..+..+..+|++++..-.
T Consensus 204 sg~~S~~~lV~kYpNLivlqTlSKsfGLAGiRvG~~~~~~~ia~iln~~K---------aPYNiS~~~s~~AL~Als~~n 274 (375)
T KOG0633|consen 204 SGVESRMKLVKKYPNLIVLQTLSKSFGLAGIRVGYGAFPLSIAEILNRAK---------APYNISVAGSVAALAALSDSN 274 (375)
T ss_pred ccccccchHhHhCCceeehhhhhhhcCcceeEeecccccHHHHHHHHhcc---------CCccccchhHHHHHHhcCccc
Confidence 33222222222237766 589988875699999999999988887422 244444555666666664211
Q ss_pred ---hhcHHHHHHHHHHHHHHhHhhccCCCceeeEe--eeeeEEEEEeecCCCCCCCCCCCcchHHHH-HHHHHHcCceEE
Q 013204 330 ---ERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIR--GTGLILGTEFADNKSPNEPFPPEWGIGAYF-GAQCEKHGMLVR 403 (447)
Q Consensus 330 ---~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~--~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~Gi~~~ 403 (447)
-+.....+-+.+.++-..|.++ +.+.... ....|+.+++.+... .++..+ .+.+.+.|+.++
T Consensus 275 ~kkme~~rdaiv~er~RL~keLt~v---~~~~~~~gg~daNFiLi~v~~~~n---------~~akkly~q~at~~gVvVR 342 (375)
T KOG0633|consen 275 GKKMEDVRDAIVRERERLFKELTEV---PFLNDYPGGSDANFILIEVTGGDN---------GMAKKLYKQDATKMGVVVR 342 (375)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhcC---ccccCCCCcccccEEEEEEcCCCc---------HHHHHHHHHHHHhcceEEE
Confidence 1222333333334444445544 3222211 223455566553321 123333 445567899998
Q ss_pred eeC------CEEEEecCCCCCHHHHHHHHHHHHHH
Q 013204 404 VSG------DNIMMSPPFIMSPEEVDELISKYGKA 432 (447)
Q Consensus 404 ~~g------~~iR~~~~~~~t~e~i~~~~~~l~~~ 432 (447)
..| +.+|++ ..|+|+-+.+++.|+..
T Consensus 343 frgse~~c~G~lRit---vGt~EentvL~k~~K~~ 374 (375)
T KOG0633|consen 343 FRGSEEGCKGYLRIT---VGTPEENTVLMKCLKQF 374 (375)
T ss_pred EcCCccccceeEEEE---cCCcccchHHHHHHHhh
Confidence 654 569999 77899999999998865
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.2e-12 Score=122.19 Aligned_cols=169 Identities=15% Similarity=0.126 Sum_probs=103.8
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 154 (447)
..+...+|+++++++. +.+..++++||+.|+..++.++ ..+++||+.++.|++.........
T Consensus 48 ~~p~~~~Le~~la~l~---g~~~al~~~SG~~Al~~~l~~l---------~pGd~Vi~~~~~y~~t~~~~~~~~------ 109 (380)
T PRK06176 48 GNPTRFALEELIADLE---GGVKGFAFASGLAGIHAVFSLF---------QSGDHVLLGDDVYGGTFRLFDKVL------ 109 (380)
T ss_pred CChhHHHHHHHHHHHh---CCCCEEEECCHHHHHHHHHHHc---------CCCCEEEEcCCChhHHHHHHHHHH------
Confidence 4455778999999885 3445788899999998666432 234788888888876632111100
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
...+.. +..++.. +++++++.+. +++++|++|...+..|.+.+ +++|.++|
T Consensus 110 ~~~gi~---v~~vd~~------------------d~e~l~~ai~----~~t~lV~lesP~Nptg~~~d----i~~I~~la 160 (380)
T PRK06176 110 VKNGLS---CTIIDTS------------------DLSQIKKAIK----PNTKALYLETPSNPLLKITD----LAQCASVA 160 (380)
T ss_pred HhcCeE---EEEcCCC------------------CHHHHHHhcC----cCceEEEEECCCCCCceecC----HHHHHHHH
Confidence 000100 1111111 1366666654 35677777777666666665 99999999
Q ss_pred HhcCCEEEEehhhcCCCccccccccccCCCCCCeeee--cccCCCccc-ceeEEEeC-hhHHHHhh
Q 013204 235 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF--AKALSSAYM-PIGAILVS-PEVSEVIH 296 (447)
Q Consensus 235 ~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~--sK~l~gg~~-~~g~~~~~-~~~~~~~~ 296 (447)
++||+++|+|++++.. ..+.+ .+...|++++ +|.++|..- -.|+++.+ +++.+.+.
T Consensus 161 ~~~gi~vivD~t~a~~-~~~~p-----~~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~ 220 (380)
T PRK06176 161 KDHGLLTIVDNTFATP-YYQNP-----LLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIA 220 (380)
T ss_pred HHcCCEEEEECCcccc-ccCCc-----cccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHH
Confidence 9999999999998732 22222 2334688765 498876321 24556664 55655554
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.5e-11 Score=103.10 Aligned_cols=332 Identities=20% Similarity=0.272 Sum_probs=199.5
Q ss_pred CCHHHHHHHHHHHhcCC---cc-cc-cCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCC
Q 013204 50 SEPRLVAAATAQLNTLP---FY-HS-FWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGR 124 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~---~~-~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~ 124 (447)
-.++.++|+.+.-+-+. +. .. .-.-..++..++.+.+.+.+ +.|.+.++++.-+|-.+++..+.
T Consensus 29 Lt~eArkal~E~gDGYSvCD~C~~Grldei~kPpI~~F~~dlaeFl---g~D~~R~t~GARe~KfavMhal~-------- 97 (382)
T COG1103 29 LTEEARKALLEWGDGYSVCDFCLEGRLDEITKPPIKDFLEDLAEFL---GMDEVRVTAGAREAKFAVMHALC-------- 97 (382)
T ss_pred CCHHHHHHHHHhcCCcchhhhhccCccccccCCcHHHHHHHHHHHh---CCceeeecccchhhHHHHHHHhc--------
Confidence 46777777776554311 11 01 11124567778888888886 78899999999999999888763
Q ss_pred CCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCc
Q 013204 125 PNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPET 204 (447)
Q Consensus 125 ~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~ 204 (447)
++...++.+...|=+++.+....|.....- ....+|.+ ..+.+.|. +-+++...+ ..+.
T Consensus 98 -~~gd~vV~D~~aHYttyvAAEragl~v~eV---------p~tg~Pey------~i~~e~y~----~viee~~~~-~g~~ 156 (382)
T COG1103 98 -KEGDWVVVDSLAHYTTYVAAERAGLNVAEV---------PNTGYPEY------KITPEGYA----EVIEEVKDE-GGDP 156 (382)
T ss_pred -cCCCEEEEcCcchHHHHHHHHhcCCeEEec---------CCCCCCce------EecHHHHH----HHHHHHHhc-cCCC
Confidence 345678889999988887776555433210 11112221 11223332 333443332 3356
Q ss_pred EEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec--ccCCCcccce
Q 013204 205 IAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMPI 282 (447)
Q Consensus 205 ~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l~gg~~~~ 282 (447)
+++.++..+.++.|++.. .+.++++|++||++++..-+|+ .||.. .+...+.+|+++-| |+|+.. .|+
T Consensus 157 ~~lallTh~Dg~YGNl~D----akkva~ic~e~gvPlllN~AYt-~Grmp----vs~ke~g~DFiVgSGHKsmAAs-~Pi 226 (382)
T COG1103 157 PALALLTHVDGEYGNLAD----AKKVAKICREYGVPLLLNCAYT-VGRMP----VSGKEIGADFIVGSGHKSMAAS-API 226 (382)
T ss_pred ceEEEEeccCCCcCCchh----hHHHHHHHHHcCCceEeeccee-ecccc----ccccccCCCEEEecCccchhcc-CCe
Confidence 888899999999998876 8999999999999999999888 66653 34445779999877 799887 599
Q ss_pred eEEEeChhHHHHhhhccCC---CCcc-CcCCCCCCcHHHHHHHHHHHHHH-hh-hcHHHHHHHHHHHHHHhHhhccCCCc
Q 013204 283 GAILVSPEVSEVIHSQSNT---LGSF-SHGFTYSGHPVSCAVAIEALKIY-KE-RNIVEQVNKIAPKFQDGVKAFSDSPI 356 (447)
Q Consensus 283 g~~~~~~~~~~~~~~~~~~---~~~~-~~~~t~~~~~~~~~aa~a~l~~~-~~-~~~~~~~~~~~~~l~~~L~~l~~~~~ 356 (447)
|++..+.++.+.+...+.+ ..-. ..+-|.-+.|+. ...|++-.+ ++ ..+-+.+ +..+++.+.|+++.+...
T Consensus 227 Gvl~~~eE~ae~V~r~Sg~~~~~KEvellGCT~rGapiv--TlmASfP~V~eRVkrWdeEv-~kaR~fv~elEkigg~~q 303 (382)
T COG1103 227 GVLAMSEEWAEIVLRRSGRAFPKKEVELLGCTVRGAPIV--TLMASFPHVVERVKRWDEEV-EKARWFVAELEKIGGVKQ 303 (382)
T ss_pred eEEeehhHHHHHHHhhcccccccceeeeecccccCchHH--HHHhcCHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhHHH
Confidence 9999999998776543311 0101 112233333332 122222211 12 1222332 345566666665521111
Q ss_pred eeeE-eeeeeEEEEEee---c--CCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC--CEEEEecCCCCCHHHHHHHHHH
Q 013204 357 IGEI-RGTGLILGTEFA---D--NKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--DNIMMSPPFIMSPEEVDELISK 428 (447)
Q Consensus 357 ~~~~-~~~g~~~~i~~~---~--~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g--~~iR~~~~~~~t~e~i~~~~~~ 428 (447)
.+.- +...++ .++.+ + .+... ..-.+.+.|.++||+-...| ..+.++. +..+.|+++..+++
T Consensus 304 lG~rPk~HdLm-~Fetp~f~eIakk~~r--------~gyFlY~ELK~RgI~GI~~G~Tk~~K~sv-yGl~~Eqve~V~~a 373 (382)
T COG1103 304 LGERPKNHDLM-KFETPVFHEIAKKHKR--------KGYFLYEELKKRGIHGIQPGQTKYFKLSV-YGLSWEQVEYVVDA 373 (382)
T ss_pred hCCCCccccee-eecCchHHHHHHhCcC--------CceeeHHHHHhcCccccccCceeEEEEEe-ecCCHHHHHHHHHH
Confidence 1110 011111 11111 0 01011 12247888999999865554 4577774 67899999999999
Q ss_pred HHHHHHHH
Q 013204 429 YGKALKAT 436 (447)
Q Consensus 429 l~~~l~~~ 436 (447)
+++.+++.
T Consensus 374 fkeI~eky 381 (382)
T COG1103 374 FKEIAEKY 381 (382)
T ss_pred HHHHHHhc
Confidence 99988763
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.1e-12 Score=109.23 Aligned_cols=167 Identities=20% Similarity=0.262 Sum_probs=109.7
Q ss_pred HHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCC
Q 013204 79 SLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFD 158 (447)
Q Consensus 79 ~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~ 158 (447)
..++.+.+++.+. .+.+++++++||++|+..+++.++ ..+++|++..+.|++.........+...
T Consensus 2 ~~~~~~~l~~~~~-~~~~~~~~~~~~t~a~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~~~~g~~~------ 66 (170)
T cd01494 2 LEELEEKLARLLQ-PGNDKAVFVPSGTGANEAALLALL--------GPGDEVIVDANGHGSRYWVAAELAGAKP------ 66 (170)
T ss_pred HHHHHHHHHHHcC-CCCCcEEEeCCcHHHHHHHHHHhC--------CCCCEEEEeecccceehhhHHHhcCCEE------
Confidence 3567788888874 456689999999999999999874 2246789989898887532222222111
Q ss_pred CCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcC
Q 013204 159 LPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYD 238 (447)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g 238 (447)
..++..... .. . .+.+.+++ .....+++++++++.++.+|...+ +++|.++|+++|
T Consensus 67 ------~~v~~~~~~------~~--~---~~~~~~~~---~~~~~~~~~v~~~~~~~~~g~~~~----~~~l~~~~~~~~ 122 (170)
T cd01494 67 ------VPVPVDDAG------YG--G---LDVAILEE---LKAKPNVALIVITPNTTSGGVLVP----LKEIRKIAKEYG 122 (170)
T ss_pred ------EEeccCCCC------cc--c---hhhhhhhh---ccccCceEEEEEecCcCCCCeEcC----HHHHHHHHHHcC
Confidence 111111100 00 0 00012222 222457889999999888887766 699999999999
Q ss_pred CEEEEehhhcCCCccccccccccCCCCCCeeeec--ccCCCcccceeEEEeC
Q 013204 239 ILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMPIGAILVS 288 (447)
Q Consensus 239 ~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l~gg~~~~g~~~~~ 288 (447)
+++|+|+++.++...... .......+|+++.| |.+++ .++|+++++
T Consensus 123 ~~li~D~a~~~~~~~~~~--~~~~~~~~d~~~~s~~K~~~~--~~~G~l~~~ 170 (170)
T cd01494 123 ILLLVDAASAGGASPAPG--VLIPEGGADVVTFSLHKNLGG--EGGGVVIVK 170 (170)
T ss_pred CEEEEecccccccccccc--cccccccCCEEEEEcccccCC--CceEEEEeC
Confidence 999999999866443212 12223458998877 99987 588888764
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-11 Score=120.68 Aligned_cols=161 Identities=15% Similarity=0.139 Sum_probs=101.6
Q ss_pred ChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccC
Q 013204 76 TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQ 155 (447)
Q Consensus 76 ~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 155 (447)
.+...+|++.++++. +.+.+++++||+.|+..++.... ..+++||+....|.+........- .
T Consensus 68 ~p~~~~Le~~lA~l~---g~~~av~~sSG~aAi~~al~all--------~~Gd~Vv~~~~~y~~t~~~~~~~l------~ 130 (436)
T PRK07812 68 NPTQDVVEQRIAALE---GGVAALLLASGQAAETFAILNLA--------GAGDHIVSSPRLYGGTYNLFHYTL------P 130 (436)
T ss_pred CchHHHHHHHHHHHh---CCCeEEEEccHHHHHHHHHHHHh--------CCCCEEEEeCCcchHHHHHHHHHh------h
Confidence 455678999999886 44568999999999999997553 334778887777755432111100 0
Q ss_pred CCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHH
Q 013204 156 KFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVK 235 (447)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~ 235 (447)
..+. .+..++-+. +++++++.+. +++++|++|.+.+..|.+.+ +++|.++|+
T Consensus 131 ~~Gi---~v~~vdd~~-----------------d~e~l~~ai~----~~tklV~ie~~sNp~G~v~D----l~~I~~la~ 182 (436)
T PRK07812 131 KLGI---EVSFVEDPD-----------------DLDAWRAAVR----PNTKAFFAETISNPQIDVLD----IPGVAEVAH 182 (436)
T ss_pred cCeE---EEEEECCCC-----------------CHHHHHHhCC----CCCeEEEEECCCCCCCeecC----HHHHHHHHH
Confidence 0010 011111000 1356666554 35678999998888888887 999999999
Q ss_pred hcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCcccceeEEEe
Q 013204 236 KYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSAYMPIGAILV 287 (447)
Q Consensus 236 ~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg~~~~g~~~~ 287 (447)
+||+++|+|+++. .+.. ........|+++ ++|.++|.+--+|.++.
T Consensus 183 ~~gi~liVD~t~a-~~~~-----~~pl~~GaDivv~S~tK~lgg~G~~i~G~vv 230 (436)
T PRK07812 183 EAGVPLIVDNTIA-TPYL-----IRPLEHGADIVVHSATKYLGGHGTAIAGVIV 230 (436)
T ss_pred HcCCEEEEECCCc-cccc-----CCchhcCCCEEEEecccccCCCCCeEEEEEE
Confidence 9999999999875 2211 111223468775 56988763233555554
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.8e-10 Score=109.94 Aligned_cols=310 Identities=16% Similarity=0.155 Sum_probs=166.5
Q ss_pred CCHHHHHHHHHHHhcCCcc-ccc-CcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCc
Q 013204 50 SEPRLVAAATAQLNTLPFY-HSF-WNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNK 127 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~-~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~ 127 (447)
-++++.+++.+.+..+... +.. .+........+++.+++++ +.+.+++++||+.|+..++..+ ..+
T Consensus 93 l~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~---gae~alvv~sg~aAi~l~l~~l---------~~G 160 (454)
T TIGR00474 93 LAEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELT---GAEDALVVNNNAAAVLLALNTL---------AKG 160 (454)
T ss_pred CCHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHh---CCCcEEEECCHHHHHHHHHHHh---------CCc
Confidence 5799999999988764211 111 0112345677888888886 3445778899999998888543 334
Q ss_pred ceEEEEcCC---Cccchhh--hhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCC
Q 013204 128 KKFIARQKS---YHGSTLI--AASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGP 202 (447)
Q Consensus 128 ~~vi~~~~~---yhg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~ 202 (447)
++||+.++. |.|.... .+...|... ..++..+ . .+++++++.+. +
T Consensus 161 deVIvs~~e~v~~ggs~~i~~~~~~~G~~~------------~~v~~~~--------~-------~~l~dle~aI~---~ 210 (454)
T TIGR00474 161 KEVIVSRGELVEIGGSFRIPDVMEQSGAKL------------VEVGTTN--------R-------THLKDYEDAIT---E 210 (454)
T ss_pred CEEEECCChhhhhcchhhHHHHHHHcCCEE------------EEeCCCC--------C-------CCHHHHHHhcC---c
Confidence 677776554 3333111 111122111 1111100 0 01366666664 3
Q ss_pred CcEEEEEEccc-cCC-CC--CccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc---------ccccccCCCCCCee
Q 013204 203 ETIAAFIAEPV-IGA-GG--VIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT---------MFGCDKYSIKPDLV 269 (447)
Q Consensus 203 ~~~a~vi~epv-~~~-~G--~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~---------~~~~~~~~~~~d~v 269 (447)
++++|+++.. +.. .| ..++ +++|.++|++||+++|+|.. +|..+. +...+......|++
T Consensus 211 -~T~lv~~~h~sN~~~~G~~~~~d----l~~I~~la~~~g~~vivD~~---sG~l~~~~~~gl~~~p~~~~~~~~GaDiv 282 (454)
T TIGR00474 211 -NTALLLKVHTSNYRIVGFTEEVS----IAELVALGREHGLPVMEDLG---SGSLVDLSRYGLPDEPTVQEVIAAGVDLV 282 (454)
T ss_pred -CCEEEEEEccCcccccCCCCCCC----HHHHHHHHHHcCCeEEEECC---CcccccchhccCCCCcccccHhHcCCCEE
Confidence 3455554444 432 35 3455 99999999999999999953 332221 11112223457999
Q ss_pred eec--ccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhc--H------------
Q 013204 270 SFA--KALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERN--I------------ 333 (447)
Q Consensus 270 ~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~--~------------ 333 (447)
++| |.++|+ ..|++++++++++.+... .+. -..-..-+.+++..+++...-.+. +
T Consensus 283 ~fSg~K~LgGp--~~G~i~g~~~~i~~l~~~-----~l~--r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~ 353 (454)
T TIGR00474 283 TFSGDKLLGGP--QAGIIVGKKELIERLKKN-----PLT--RALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQS 353 (454)
T ss_pred EecCccccCCC--eEEEEEECHHHHHhhhhc-----hhH--HHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccC
Confidence 998 999875 478899999988776531 100 011112223333334443221111 1
Q ss_pred HHHHHHHHHHHHHhHhhccCCCceeeE-e-----eeeeE-------EEEEeecCCCCCCCCCCCcchHHHHHHHHHHcC-
Q 013204 334 VEQVNKIAPKFQDGVKAFSDSPIIGEI-R-----GTGLI-------LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHG- 399 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l~~~~~~~~~-~-----~~g~~-------~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G- 399 (447)
.++..++...+.+.|+++...++...+ . |-|.+ +.+.+.... .-...+.++|++..
T Consensus 354 ~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~ggg~~p~~~l~~~~v~~~~~~----------~~~~~l~~~lr~~~~ 423 (454)
T TIGR00474 354 PEELRARAERLAKRLKAALGPGFELEIVPGLSQVGGGSLPDERLPSYAVTLTPDG----------LSAEKLEARLRELPP 423 (454)
T ss_pred HHHHHHHHHHHHHHHHhhccCCceEEEEEcCCcccCCCCcCCCCCeEEEEEecCC----------CCHHHHHHHHhcCCC
Confidence 135555666666767653111111111 1 11111 122222111 01455777777544
Q ss_pred -ceEEeeCCEEEEecCCCCCHHHHHHHHHHH
Q 013204 400 -MLVRVSGDNIMMSPPFIMSPEEVDELISKY 429 (447)
Q Consensus 400 -i~~~~~g~~iR~~~~~~~t~e~i~~~~~~l 429 (447)
|+.+...+.+.+-+. +..++|++.++++|
T Consensus 424 ~ii~r~~~~~~~ld~r-~~~~~~~~~~~~~~ 453 (454)
T TIGR00474 424 PIIGRIEDDRFLLDLR-TLLEDEEELLIEAL 453 (454)
T ss_pred CEEEEEECCEEEEEeC-cCCHHHHHHHHHHh
Confidence 677666677888765 66888888888776
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.9e-11 Score=118.75 Aligned_cols=232 Identities=18% Similarity=0.175 Sum_probs=131.7
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhc---ccCCc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAAS---LSGLP 151 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~---~~~~~ 151 (447)
..+...+|++.++++. +.+..++++||+.|+..++.++ ..+++||+.++.|.+....... ..|..
T Consensus 48 ~~p~~~~Le~~lA~l~---g~~~~~~~~sG~aai~~~~~~l---------~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~ 115 (377)
T PRK07671 48 GNPTRAALEELIAVLE---GGHAGFAFGSGMAAITAVMMLF---------SSGDHVILTDDVYGGTYRVMTKVLNRFGIE 115 (377)
T ss_pred CChHHHHHHHHHHHHh---CCCceEEeCCHHHHHHHHHHHh---------CCCCEEEECCCccchHHHHHHHHHhcCCeE
Confidence 4566788999999886 3345677888998887665432 2347899999988765322111 11111
Q ss_pred cccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHH
Q 013204 152 ALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 231 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~ 231 (447)
+..++.. +.+++++.+. + ++++|++|..++..|...+ +++|.
T Consensus 116 ------------v~~v~~~------------------d~~~l~~ai~---~-~tklV~le~P~NPtg~~~d----l~~I~ 157 (377)
T PRK07671 116 ------------HTFVDTS------------------NLEEVEEAIR---P-NTKAIYVETPTNPLLKITD----IKKIS 157 (377)
T ss_pred ------------EEEECCC------------------CHHHHHHhcC---C-CCeEEEEECCCCCCCcccC----HHHHH
Confidence 1111110 1366666664 2 4567777766666666655 99999
Q ss_pred HHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCcc-cceeEEEe-ChhHHHHhhhccCCCCccCc
Q 013204 232 AVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSAY-MPIGAILV-SPEVSEVIHSQSNTLGSFSH 307 (447)
Q Consensus 232 ~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg~-~~~g~~~~-~~~~~~~~~~~~~~~~~~~~ 307 (447)
++|+++|+++|+||++... ..+.+ .....|+++ ++|.++|.. .-.|+++. ++++++.+... ..
T Consensus 158 ~la~~~g~~lvvD~a~~~~-~~~~p-----~~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~-------~~ 224 (377)
T PRK07671 158 TIAKEKGLLTIVDNTFMTP-YWQSP-----ISLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFV-------QN 224 (377)
T ss_pred HHHHHcCCEEEEECCCCcc-ccCCh-----hhhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHH-------HH
Confidence 9999999999999998631 22222 123357775 569998631 12344555 56677766531 11
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccC-----CCcee----------eEeeeeeEEEEEe
Q 013204 308 GFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD-----SPIIG----------EIRGTGLILGTEF 371 (447)
Q Consensus 308 ~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~-----~~~~~----------~~~~~g~~~~i~~ 371 (447)
......+|..+..++..++.+.. ..++..++...+.+.|++.+. +|... ...|.|.++.+++
T Consensus 225 ~~g~~~~~~~a~l~~~~l~tl~~--R~~~~~~na~~la~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~ 301 (377)
T PRK07671 225 STGGILGPQDSWLLLRGLKTLGI--RMEEHETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDV 301 (377)
T ss_pred hhcCCCCHHHHHHHHcCcChHHH--HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEe
Confidence 11223345555544444433221 234555566666666654321 12111 1235677888887
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.5e-11 Score=117.45 Aligned_cols=235 Identities=12% Similarity=0.074 Sum_probs=134.5
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh---hcccCCc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA---ASLSGLP 151 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~---~~~~~~~ 151 (447)
.++....|++.++.+- .+ +..++++||++|+..++.... ..+++||+.++.|.++.... +..-|..
T Consensus 62 gnPt~~~Le~~la~le--~~-~~~v~~sSG~aAi~~~l~all--------~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~ 130 (395)
T PRK05967 62 GTPTTDALCKAIDALE--GS-AGTILVPSGLAAVTVPFLGFL--------SPGDHALIVDSVYYPTRHFCDTMLKRLGVE 130 (395)
T ss_pred CChHHHHHHHHHHHHh--CC-CCEEEECcHHHHHHHHHHHhc--------CCCCEEEEccCCcHHHHHHHHHHHHhcCeE
Confidence 4556777888888773 23 345677779999999987553 34578999999998875321 1111110
Q ss_pred cccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHH
Q 013204 152 ALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 231 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~ 231 (447)
+..++..+ .+.+++.+. +++++|++|...+..+.+.+ +++|+
T Consensus 131 ------------v~~vd~~~------------------~e~l~~al~----~~TklV~lesPsNP~l~v~d----l~~I~ 172 (395)
T PRK05967 131 ------------VEYYDPEI------------------GAGIAKLMR----PNTKVVHTEAPGSNTFEMQD----IPAIA 172 (395)
T ss_pred ------------EEEeCCCC------------------HHHHHHhcC----cCceEEEEECCCCCCCcHHH----HHHHH
Confidence 11111100 145666664 34678888865555544444 99999
Q ss_pred HHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCC-cccceeEEEeChhHHHHhhhccCCCCccCcC
Q 013204 232 AVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSS-AYMPIGAILVSPEVSEVIHSQSNTLGSFSHG 308 (447)
Q Consensus 232 ~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~g-g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (447)
++|+++|+++|+|+++... ..+.....-.|+++ .+|.++| +-.-+|+++.+++..+.+... ...
T Consensus 173 ~la~~~g~~vvVD~t~a~p------~~~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~-------~~~ 239 (395)
T PRK05967 173 EAAHRHGAIVMMDNTWATP------LYFRPLDFGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEA-------HGT 239 (395)
T ss_pred HHHHHhCCEEEEECCccCc------eecChhHcCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHHHHH-------HHH
Confidence 9999999999999998632 11222223467775 5698877 224456667777765555321 111
Q ss_pred CCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccC-----CCcee----------eEeeeeeEEEEEeec
Q 013204 309 FTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD-----SPIIG----------EIRGTGLILGTEFAD 373 (447)
Q Consensus 309 ~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~-----~~~~~----------~~~~~g~~~~i~~~~ 373 (447)
.....+|..+...+..++-+. -..++..++...+.+.|++-+. +|... ...|.|.++.+++..
T Consensus 240 ~G~~~~p~da~l~~rgl~Tl~--lR~~~~~~na~~lA~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~ 317 (395)
T PRK05967 240 LGLCAGPDDTYQILRGLRTMG--IRLEHHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAA 317 (395)
T ss_pred cCCCCCHHHHHHHHcCcccHH--HHHHHHHHHHHHHHHHHHhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEcC
Confidence 112345666554444443221 1123444455555555554311 22110 123568888888863
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.9e-11 Score=115.08 Aligned_cols=299 Identities=15% Similarity=0.153 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHhcCcCCCCeEEEeCChh-hHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCC
Q 013204 78 PSLDLAKELLEMFTASKMAKVFFTNSGS-EANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQK 156 (447)
Q Consensus 78 ~~~~l~~~l~~~~~~~~~~~v~~~~sGs-eA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 156 (447)
...++++.+++++.-.....++++++|| .++..++..++.. ..+.+.||+.... |-++..++...|....
T Consensus 106 l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~-----~~~gd~VI~p~~t-h~S~~kAi~~~G~~pv--- 176 (444)
T TIGR03531 106 LTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHK-----RPKAKYVIWPRID-QKSCIKAISTAGFEPR--- 176 (444)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCc-----CCCCCEEEEECcC-hHHHHHHHHHcCCeEE---
Confidence 4456667777775322234789999999 6888887765311 1124567776655 6666665555543211
Q ss_pred CCCCCCcceecCC---CCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHH
Q 013204 157 FDLPAPFVLHTDC---PHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAV 233 (447)
Q Consensus 157 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l 233 (447)
.++. ++.+. .++++|++.+....++.+.+|+..|..+..|...+ +++|.++
T Consensus 177 ---------~Vd~~~d~~~~~-------------iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~dd----L~eIa~l 230 (444)
T TIGR03531 177 ---------VIETVLDGDELT-------------TDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDD----IEEIAKI 230 (444)
T ss_pred ---------EeeeeecCcCCC-------------cCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhC----HHHHHHH
Confidence 1111 01111 11488888887543356777777776443333333 9999999
Q ss_pred HHhcCCEEEEehhhcCCCcccccccc--ccCCC-CCCeeee--cccCCCcccceeEEEe-ChhHHHHhhhccCCCCccCc
Q 013204 234 VKKYDILFIADEVICAFGRLGTMFGC--DKYSI-KPDLVSF--AKALSSAYMPIGAILV-SPEVSEVIHSQSNTLGSFSH 307 (447)
Q Consensus 234 ~~~~g~~li~DEv~~g~g~~g~~~~~--~~~~~-~~d~v~~--sK~l~gg~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~ 307 (447)
|++||+++|+|++|. ++.. ..... .-... ..|++++ .|.+..++ ..|+++. ++++++.+... ..
T Consensus 231 a~k~gI~lIvDaAyg-~~~~-~~~~~~~~g~~~Grad~vv~s~hK~l~~pg-~Gg~I~~~d~el~~~i~~~-------y~ 300 (444)
T TIGR03531 231 CANYDIPHIVNNAYG-LQSN-KYMELINKAIKVGRVDAVVSSTDKNFMVPV-GGAIIYSFDENFIQEISKS-------YP 300 (444)
T ss_pred HHHcCCEEEEECcCc-CcCh-hhhhhhhccccccCCCeEEEeCccCCCCCC-CEEEEEECCHHHHHHHHHh-------cc
Confidence 999999999999996 3211 00000 11112 3577765 48776532 2355556 67788877632 11
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHhHhhc-cCCC-ceeeEeeeeeEEEEEeecCCCCCCCCC
Q 013204 308 GFTYSGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQDGVKAF-SDSP-IIGEIRGTGLILGTEFADNKSPNEPFP 382 (447)
Q Consensus 308 ~~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l-~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~~ 382 (447)
+ ..... .++.+..+.+. +.. +++.++..++.+++.+.|+++ .+++ .+...+..-.-+++.+..-. .
T Consensus 301 g-~~~~s-~~~~~~~~ll~-~G~~g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~~-~----- 371 (444)
T TIGR03531 301 G-RASAS-PSLDVLITLLS-LGSKGYLELLKERKEMYKYLKELLQKLAERHGERLLDTPENPISSAMTLSTLK-G----- 371 (444)
T ss_pred C-CCCCh-HHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEeccccc-c-----
Confidence 1 11212 23333333332 222 445666777888888888887 3333 22222222222233333211 0
Q ss_pred CCcchHHHHHHHHHHcCceE----Eee-----C----------------CEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 383 PEWGIGAYFGAQCEKHGMLV----RVS-----G----------------DNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 383 ~~~~~~~~~~~~l~~~Gi~~----~~~-----g----------------~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
.....+...|..++|-- .++ + .++-+...+.++++|||.++++|++++
T Consensus 372 ---~~~~~~g~~l~~~~v~g~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~~ 444 (444)
T TIGR03531 372 ---KDPTMLGSMLYSRRVTGPRVVTNGDSKTVGGCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKSL 444 (444)
T ss_pred ---cCHHHHHHHHHhCCCCCceeecCCCceEECCEEeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhcC
Confidence 01345677777776521 111 0 123333445689999999999999863
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.5e-11 Score=118.51 Aligned_cols=160 Identities=17% Similarity=0.166 Sum_probs=103.5
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhc-ccCCccc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAAS-LSGLPAL 153 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~-~~~~~~~ 153 (447)
..+...++++.++++. +.+.+++++||++|+..++.... ..+++||+....|++....... ..
T Consensus 62 ~~p~~~~le~~lA~l~---g~~~av~~sSGt~Al~~al~~ll--------~~Gd~Vi~~~~~y~~t~~~~~~~l~----- 125 (433)
T PRK08134 62 SNPTVAVLEERVAALE---GGVGAIATASGQAALHLAIATLM--------GAGSHIVASSALYGGSHNLLHYTLR----- 125 (433)
T ss_pred cChHHHHHHHHHHHHh---CCCcEEEeCCHHHHHHHHHHHHh--------CCCCEEEEeCCccHHHHHHHHHHHh-----
Confidence 3456788999999886 23357999999999999988653 2347888888888765322111 00
Q ss_pred cCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHH
Q 013204 154 HQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAV 233 (447)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l 233 (447)
.++. .+..++.. +.+++++.+. +++++|+++.+.+..|.+++ +++|.++
T Consensus 126 --~~Gi---~v~~vd~~------------------d~~~l~~~i~----~~TklV~~e~~~np~g~v~D----i~~I~~l 174 (433)
T PRK08134 126 --RFGI---ETTFVKPG------------------DIDGWRAAIR----PNTRLLFGETLGNPGLEVLD----IPTVAAI 174 (433)
T ss_pred --hCCe---EEEEECCC------------------CHHHHHHhcC----CCCeEEEEECCCcccCcccC----HHHHHHH
Confidence 0010 01122211 1367777765 35678888888777787777 9999999
Q ss_pred HHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec--ccCCCcccceeEEEe
Q 013204 234 VKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMPIGAILV 287 (447)
Q Consensus 234 ~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l~gg~~~~g~~~~ 287 (447)
|++||+++|+|.+|+ .+.. ........|++++| |.++|.+--+|.++.
T Consensus 175 a~~~gi~livD~t~a-~~~~-----~~pl~~GaD~vv~S~tK~l~g~g~~~gG~v~ 224 (433)
T PRK08134 175 AHEAGVPLLVDSTFT-TPYL-----LRPFEHGADLVYHSATKFLGGHGTAIGGVLV 224 (433)
T ss_pred HHHcCCEEEEECCCc-cccc-----CCchhcCCCEEEeccccccCCCCCceEEEEE
Confidence 999999999999985 2221 11123457888765 877763233444443
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.9e-10 Score=110.31 Aligned_cols=310 Identities=15% Similarity=0.184 Sum_probs=182.0
Q ss_pred HHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEE
Q 013204 52 PRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFI 131 (447)
Q Consensus 52 p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi 131 (447)
.+..+++.+.++..... ...+...++++++++++ +.+.++.++||+.|+..|++++ |-.++++||
T Consensus 5 ~e~~~~v~~~l~s~~~~-----~~g~~~~~fE~~~a~~~---g~~~~~~~~sgt~Al~~al~~l-------~~~~gdeVi 69 (363)
T PF01041_consen 5 EEEIDAVLEVLRSGWLS-----TYGPYVEEFEKEFAEYF---GVKYAVAVSSGTSALHLALRAL-------GLGPGDEVI 69 (363)
T ss_dssp HHHHHHHHHHHHHTCCS-----SSSHHHHHHHHHHHHHH---TSSEEEEESSHHHHHHHHHHHT-------TGGTTSEEE
T ss_pred HHHHHHHHHHHHhCCcc-----CCCHHHHHHHHHHHHHh---CCCeEEEeCChhHHHHHHHHhc-------CCCcCceEe
Confidence 35566677777654221 12567889999999998 5679999999999999999985 323458899
Q ss_pred EEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC-CcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEE
Q 013204 132 ARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP-HYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIA 210 (447)
Q Consensus 132 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~ 210 (447)
+..-+|..........+..+.+ +|.. +.+ ..+++++++.+. +.+++|++
T Consensus 70 ~p~~t~~~~~~ai~~~G~~pv~-------------~Di~~~~~-------------~id~~~~~~~i~----~~t~ai~~ 119 (363)
T PF01041_consen 70 VPAYTFPATASAILWAGAEPVF-------------VDIDPETL-------------NIDPEALEKAIT----PKTKAILV 119 (363)
T ss_dssp EESSS-THHHHHHHHTT-EEEE-------------E-BETTTS-------------SB-HHHHHHHHH----TTEEEEEE
T ss_pred cCCCcchHHHHHHHHhccEEEE-------------EeccCCcC-------------CcCHHHHHHHhc----cCccEEEE
Confidence 8887887776555554443332 1211 110 112478888887 35577777
Q ss_pred ccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec----ccCCCcccceeEEE
Q 013204 211 EPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA----KALSSAYMPIGAIL 286 (447)
Q Consensus 211 epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s----K~l~gg~~~~g~~~ 286 (447)
-...|. ... +++|.++|++||++||-|-+|+ +|-. +.-...|-.-|+.+|| |.++.| -.|+++
T Consensus 120 ~h~~G~---~~d----~~~i~~~~~~~~i~lIeD~a~a-~g~~---~~g~~~G~~gd~~~fSf~~~K~i~~g--eGG~v~ 186 (363)
T PF01041_consen 120 VHLFGN---PAD----MDAIRAIARKHGIPLIEDAAQA-FGAR---YKGRPVGSFGDIAIFSFHPTKIITTG--EGGAVV 186 (363)
T ss_dssp E-GGGB----------HHHHHHHHHHTT-EEEEE-TTT-TT-E---ETTEETTSSSSEEEEESSTTSSS-SS--S-EEEE
T ss_pred ecCCCC---ccc----HHHHHHHHHHcCCcEEEccccc-cCce---eCCEeccCCCCceEecCCCCCCCcCC--CCeeEE
Confidence 776653 333 9999999999999999999998 4321 1112233345888876 887654 235666
Q ss_pred eC-hhHHHHhhhccCCC------CccC----cCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCC
Q 013204 287 VS-PEVSEVIHSQSNTL------GSFS----HGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSP 355 (447)
Q Consensus 287 ~~-~~~~~~~~~~~~~~------~~~~----~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~ 355 (447)
.+ +++.+.++.-.... ..+. .+..+-.+.+.++.+++-|+.+ ++..+..+++.+++++.|..+....
T Consensus 187 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~L--~~~~~~R~~~a~~y~~~L~~~~~~~ 264 (363)
T PF01041_consen 187 TNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKRL--DEIIARRRENAQRYREALAGIPGIK 264 (363)
T ss_dssp ESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHTTGTTEE
T ss_pred ecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhcCCCcc
Confidence 65 56666654321111 0111 2234455677766666666644 4445666777778888887763211
Q ss_pred cee---eEe-eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-------------------------
Q 013204 356 IIG---EIR-GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG------------------------- 406 (447)
Q Consensus 356 ~~~---~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g------------------------- 406 (447)
.+. ... .....+.+.+.+... . ....+.+.|.++||-+.+..
T Consensus 265 ~~~~~~~~~~~~~~~f~i~~~~~~~-~--------~rd~l~~~L~~~GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae 335 (363)
T PF01041_consen 265 PPPIPDGAERSSYYRFPIRLPDEAL-A--------DRDELVEALRARGIETRPHYPKPLHRQPVYRSYPYYAPGDLPNAE 335 (363)
T ss_dssp EEGCGTTTEEBCESSEEEEETCCGC-S--------THHHHHHHHHHTTBEEBCSTSSCGGGSGGGTTGEEEETSSSHHHH
T ss_pred ccccccccccccccccccccccccc-c--------hHHHHHHHHHHCCCcccccccCchhhhHHHHhcCccccCCCHHHH
Confidence 111 111 111122333332211 0 14568899999999877421
Q ss_pred ----CEEEEecCCCCCHHHHHHHHHHHH
Q 013204 407 ----DNIMMSPPFIMSPEEVDELISKYG 430 (447)
Q Consensus 407 ----~~iR~~~~~~~t~e~i~~~~~~l~ 430 (447)
..+.+-.+...++++++++++.|+
T Consensus 336 ~l~~r~l~LP~~~~lt~edv~~I~~~ir 363 (363)
T PF01041_consen 336 RLSQRLLSLPIHPRLTEEDVDYIAEAIR 363 (363)
T ss_dssp HHHHHEEEEEHSTTSCHHHHHHHHHHHH
T ss_pred HHHhCeEECcCCCCCCHHHHHHHhhccC
Confidence 245666667789999999988874
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.9e-11 Score=117.39 Aligned_cols=235 Identities=14% Similarity=0.176 Sum_probs=138.6
Q ss_pred ChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh---hcccCCcc
Q 013204 76 TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA---ASLSGLPA 152 (447)
Q Consensus 76 ~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~---~~~~~~~~ 152 (447)
.+...+|++.++++. +.+.++.++||+.|+..++..+. ..+++||+..+.|.+..... +..-|..
T Consensus 60 nPtv~~lE~~la~le---g~~~av~~~SG~aAi~~al~all--------~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~- 127 (432)
T PRK06702 60 NPTLAAFEQKLAELE---GGVGAVATASGQAAIMLAVLNIC--------SSGDHLLCSSTVYGGTFNLFGVSLRKLGID- 127 (432)
T ss_pred CcHHHHHHHHHHHHh---CCCcEEEECCHHHHHHHHHHHhc--------CCCCEEEECCCchHHHHHHHHHHHHHCCCE-
Confidence 355778999999885 33468899999999999998553 34578999999997764321 1111111
Q ss_pred ccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHH
Q 013204 153 LHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQA 232 (447)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~ 232 (447)
+..++.. .+++++++++. + ++++|++|...+..+.++. +++|++
T Consensus 128 -----------v~~vd~~-----------------~d~~~l~~~I~---~-~Tk~I~~e~pgnP~~~v~D----i~~I~~ 171 (432)
T PRK06702 128 -----------VTFFNPN-----------------LTADEIVALAN---D-KTKLVYAESLGNPAMNVLN----FKEFSD 171 (432)
T ss_pred -----------EEEECCC-----------------CCHHHHHHhCC---c-CCeEEEEEcCCCccccccC----HHHHHH
Confidence 1112210 01266777775 3 4567777776555555555 999999
Q ss_pred HHHhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCcccceeEEEe-Chh----------HHH------
Q 013204 233 VVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSAYMPIGAILV-SPE----------VSE------ 293 (447)
Q Consensus 233 l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg~~~~g~~~~-~~~----------~~~------ 293 (447)
+|++||+++|+|+++. .+..++-+..-+|+++ ++|-++|..--+|.++. ... +.+
T Consensus 172 iA~~~gi~livD~T~~------tP~~~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~ 245 (432)
T PRK06702 172 AAKELEVPFIVDNTLA------TPYLCQAFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYH 245 (432)
T ss_pred HHHHcCCEEEEECCCC------chhhCChhhcCCCEEEEccccccCCCcceeceEEEeCCCccccccccccccccccccc
Confidence 9999999999999863 1333443344477775 67977763233343332 211 110
Q ss_pred ---------------HhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccC-----
Q 013204 294 ---------------VIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD----- 353 (447)
Q Consensus 294 ---------------~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~----- 353 (447)
.... ..........+|+.+..++..|+-+ +-..++..++...+.+.|++.+.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~sp~~a~l~~rgL~Tl--~lR~~r~~~Na~~la~~L~~~p~V~~V~ 317 (432)
T PRK06702 246 GVSYVQNFGAAAYIVKARV------QLLRDYGNCMSPFNAYISNIGLETL--HLRMERHSENALAVAKWLADHERIEWVN 317 (432)
T ss_pred ccchhhccchhhHHHHHHH------HHHHHccCCCCHHHHHHHHhccCcH--HHHHHHHHHHHHHHHHHHHhCCCcceEE
Confidence 0000 0011123466788777666666533 23345556777777777775422
Q ss_pred CCceee----------E-eeeeeEEEEEee
Q 013204 354 SPIIGE----------I-RGTGLILGTEFA 372 (447)
Q Consensus 354 ~~~~~~----------~-~~~g~~~~i~~~ 372 (447)
+|.... . .|.|.++.+++.
T Consensus 318 yPgl~~~p~~~l~~~~~~~g~gg~~sf~l~ 347 (432)
T PRK06702 318 YPGLDSNENYSLAQKYLKKGASGVLTFGIK 347 (432)
T ss_pred CCCCCCCccHHHHHHhCcCCCceEEEEEec
Confidence 221111 1 356788888886
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.9e-10 Score=105.73 Aligned_cols=314 Identities=17% Similarity=0.151 Sum_probs=184.7
Q ss_pred HHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEE
Q 013204 52 PRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFI 131 (447)
Q Consensus 52 p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi 131 (447)
.+..+++.+.+..+... .-+...++++++++.+ +...++.++|||.|+..|++.+- -..++.||
T Consensus 15 ~~e~~~v~~vl~sg~i~------~G~~v~~FE~~~ae~~---G~k~ava~~sgT~AL~laL~al~-------ig~GDeVI 78 (374)
T COG0399 15 EEELAAVQEVLKSGWLT------GGPFVRRFEQAFAEYL---GVKYAVAVSSGTAALHLALLALA-------IGPGDEVI 78 (374)
T ss_pred hHHHHHHHHHHHcCCee------cChHHHHHHHHHHHHh---CCCeEEEecChHHHHHHHHHhcC-------CCCCCEEE
Confidence 35566677777664432 2345778999999886 66789999999999999999542 13457888
Q ss_pred EEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEc
Q 013204 132 ARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAE 211 (447)
Q Consensus 132 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~e 211 (447)
+..-+|-.+....+..+..|.+ +|+... .+. .+.+.+|+.+. + ++++||.=
T Consensus 79 ~ps~TfvATan~i~~~Ga~PVF-------------vDid~~-----------T~n-id~~~ie~aIt---~-~tKAIipV 129 (374)
T COG0399 79 VPSFTFVATANAVLLVGAKPVF-------------VDIDPD-----------TLN-IDPDLIEAAIT---P-RTKAIIPV 129 (374)
T ss_pred ecCCchHHHHHHHHHcCCeEEE-------------EecCCc-----------ccC-CCHHHHHHHcc---c-CCeEEEEe
Confidence 8777776665555554444432 222110 000 12477888776 2 35566654
Q ss_pred cccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec----ccCCCcccceeEEEe
Q 013204 212 PVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA----KALSSAYMPIGAILV 287 (447)
Q Consensus 212 pv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s----K~l~gg~~~~g~~~~ 287 (447)
...| ..+. ++.|.++|++||+++|-|-+|+ +|-.= --...|---|+.+|| |.|+.| -.|.++.
T Consensus 130 hl~G---~~~d----m~~i~~la~~~~l~vIEDaAqa-~Ga~y---~gk~vGt~Gd~~~fSF~~~K~ittg--EGGav~t 196 (374)
T COG0399 130 HLAG---QPCD----MDAIMALAKRHGLPVIEDAAQA-HGATY---KGKKVGSFGDIGAFSFHATKNLTTG--EGGAVVT 196 (374)
T ss_pred hhcc---CCCC----HHHHHHHHHHcCCeEEEEcchh-ccCee---cCcccccccceEEEEecCCCCcccc--CceEEEe
Confidence 4443 2333 9999999999999999999997 54321 112223345777776 888764 2245555
Q ss_pred -ChhHHHHhhhccCCCC---------ccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCce
Q 013204 288 -SPEVSEVIHSQSNTLG---------SFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPII 357 (447)
Q Consensus 288 -~~~~~~~~~~~~~~~~---------~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~ 357 (447)
++++.+.++.-..+-. ....+..+-.+-+.++.+++-|+. -+++.++.+++.+...+.|+++.....+
T Consensus 197 nd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl~QL~~--l~~~~~~R~~~a~~Y~~~l~~~~~~~~p 274 (374)
T COG0399 197 NDEELAEKARSLRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGLAQLER--LDEINERRREIAQIYAEALKGLPGITLP 274 (374)
T ss_pred CCHHHHHHHHHHHHhCcCCCccccceeeecccccCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCcccc
Confidence 5667766654211100 111122222233444444444443 3556677777788888888876332222
Q ss_pred eeEeee-eeE--EEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCce----EEee--------------C----------
Q 013204 358 GEIRGT-GLI--LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGML----VRVS--------------G---------- 406 (447)
Q Consensus 358 ~~~~~~-g~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~----~~~~--------------g---------- 406 (447)
....+. ..+ ..+.+..... ....+...|.++||- ..|. +
T Consensus 275 ~~~~~~~~~~~~~~i~~~~~~~----------~R~~l~~~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~ 344 (374)
T COG0399 275 PEPDGAVHAWHLYTILVDEEGI----------SRDALMESLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSE 344 (374)
T ss_pred CCCCCceeeeeeeEEEecCCCC----------CHHHHHHHHHhCCCCceEEeeccccchhhhcccccccCCCchHHHHhh
Confidence 111111 111 1222232211 145577888888554 2321 0
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 407 DNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 407 ~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
..+.+-.....++++++++++.|++++.+
T Consensus 345 r~l~LP~~p~l~~~~~~~V~~~l~~~~~~ 373 (374)
T COG0399 345 RILSLPLHPNLSEEDVDRVIEALKEVLGS 373 (374)
T ss_pred CeEEccCCCCCCHHHHHHHHHHHHHHhcc
Confidence 34677666778999999999999998753
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.8e-11 Score=116.51 Aligned_cols=159 Identities=13% Similarity=0.164 Sum_probs=104.2
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchh--hhhcccCCcc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTL--IAASLSGLPA 152 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~--~~~~~~~~~~ 152 (447)
..+...+++++++++. +.+..+.++||+.|+..++..+. ..+++||+.++.|.++.. ..+...|..
T Consensus 45 g~p~~~~lE~~la~le---g~~~~v~~ssG~~Ai~~~l~all--------~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~- 112 (397)
T PRK05939 45 GTPTTAALEAKITKME---GGVGTVCFATGMAAIAAVFLTLL--------RAGDHLVSSQFLFGNTNSLFGTLRGLGVE- 112 (397)
T ss_pred CCHHHHHHHHHHHHHh---CCCeEEEeCCHHHHHHHHHHHHc--------CCCCEEEECCCccccHHHHHHHHHhcCCE-
Confidence 3456778999999885 33457778889999999987653 334788888877755421 111111111
Q ss_pred ccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHH
Q 013204 153 LHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQA 232 (447)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~ 232 (447)
+..++.. +.+++++.+. +++++|++|.+.+..|.+.+ +++|.+
T Consensus 113 -----------v~~v~~~------------------d~e~l~~~l~----~~tklV~vesp~NptG~v~d----l~~I~~ 155 (397)
T PRK05939 113 -----------VTMVDAT------------------DVQNVAAAIR----PNTRMVFVETIANPGTQVAD----LAGIGA 155 (397)
T ss_pred -----------EEEECCC------------------CHHHHHHhCC----CCCeEEEEECCCCCCCCHHh----HHHHHH
Confidence 1112211 1366777664 35678888888777777755 999999
Q ss_pred HHHhcCCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCcccceeEEEeC
Q 013204 233 VVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSAYMPIGAILVS 288 (447)
Q Consensus 233 l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg~~~~g~~~~~ 288 (447)
+|++||+++|+|++|... ..++......|++ +++|.++|.+..+|+++..
T Consensus 156 la~~~gi~livD~t~a~~------~~~~~~~~gaDivv~S~sK~~~g~g~~igg~v~~ 207 (397)
T PRK05939 156 LCRERGLLYVVDNTMTSP------WLFRPKDVGASLVINSLSKYIAGHGNALGGAVTD 207 (397)
T ss_pred HHHHcCCEEEEECCcccc------cccCccccCCEEEEecCeecccCCCCeEEEEEec
Confidence 999999999999998521 1122222346766 4679999855788887664
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.4e-12 Score=117.47 Aligned_cols=229 Identities=17% Similarity=0.200 Sum_probs=125.7
Q ss_pred CCChHHHHHHHHHHHhcCcCCCCeEEE-eCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCC-c
Q 013204 74 RTTKPSLDLAKELLEMFTASKMAKVFF-TNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGL-P 151 (447)
Q Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~~v~~-~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~-~ 151 (447)
.+.....+.++.+++++. .++++| ++|+++++..++..+. .++++|++..++| .+...++...|. +
T Consensus 56 ~~~g~i~~~~~~~A~~~g---a~~~~~~~~Gst~a~~~~l~al~--------~~gd~Vlv~~~~h-~s~~~~~~~~g~~~ 123 (294)
T cd00615 56 DPTGPIKEAQELAARAFG---AKHTFFLVNGTSSSNKAVILAVC--------GPGDKILIDRNCH-KSVINGLVLSGAVP 123 (294)
T ss_pred CCChHHHHHHHHHHHHhC---CCCEEEEcCcHHHHHHHHHHHcC--------CCCCEEEEeCCch-HHHHHHHHHCCCEE
Confidence 356677888888888873 334555 8888899999887653 3346777766554 444334333332 2
Q ss_pred cccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHH
Q 013204 152 ALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 231 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~ 231 (447)
.+.... ....+. .. ...+.+++++.+... ++..++++..| + ..|...+ +++|.
T Consensus 124 ~~v~~~-----------~~~~~~--~~-------~~i~~~~l~~~l~~~-~~~k~v~l~~p-~-~~G~~~d----l~~I~ 176 (294)
T cd00615 124 VYLKPE-----------RNPYYG--IA-------GGIPPETFKKALIEH-PDAKAAVITNP-T-YYGICYN----LRKIV 176 (294)
T ss_pred EEecCc-----------cCcccC--cC-------CCCCHHHHHHHHHhC-CCceEEEEECC-C-CCCEecC----HHHHH
Confidence 111000 000000 00 011147788777542 22334455545 3 3566665 99999
Q ss_pred HHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCcccce-eEEEeChhH--HHHhhhccCCCCccC
Q 013204 232 AVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSAYMPI-GAILVSPEV--SEVIHSQSNTLGSFS 306 (447)
Q Consensus 232 ~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg~~~~-g~~~~~~~~--~~~~~~~~~~~~~~~ 306 (447)
++|++||+++|+||+|......+............|+++ ++|.++| ++. |++..+.+. .+.+.. .+.
T Consensus 177 ~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~~~div~~S~hK~l~g--~~~~~~l~~~~~~~~~~~~~~------~~~ 248 (294)
T cd00615 177 EEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAGADIVVQSTHKTLPA--LTQGSMIHVKGDLVNPDRVNE------ALN 248 (294)
T ss_pred HHHHhcCCeEEEECcchhhhccCcccCcchhhcCCcEEEEchhcccch--HhHHHHHHhCCCcCCHHHHHH------HHH
Confidence 999999999999999863211111111111123467775 5698865 343 344344331 222221 111
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHhHh
Q 013204 307 HGFTYSGHPVSCAVAIEALKIYKE--RNIVEQVNKIAPKFQDGVK 349 (447)
Q Consensus 307 ~~~t~~~~~~~~~aa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~ 349 (447)
...+.+++.+.+++..++++.+.. +++.++..++.+.+++.|+
T Consensus 249 ~~~ttsps~~~~asl~~a~~~~~~~g~~~~~~~~~~~~~~r~~l~ 293 (294)
T cd00615 249 LHQSTSPSYLILASLDVARAMMALEGKELVEELIELALYARQEIN 293 (294)
T ss_pred HHCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 123445666666666667766543 3456677777777777664
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-09 Score=100.98 Aligned_cols=292 Identities=15% Similarity=0.185 Sum_probs=174.3
Q ss_pred CeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccC
Q 013204 96 AKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRY 175 (447)
Q Consensus 96 ~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (447)
-.++.++|.+.+.+.+++++. ...+.|++=+.+|.+..... ...| +..+|++..
T Consensus 125 wdiiit~G~t~~l~~~l~~~~--------N~gd~vlie~~ty~~AL~s~-~a~g--------------v~~ipv~md--- 178 (472)
T KOG0634|consen 125 WDIIITNGNTDGLFKVLRTLI--------NRGDHVLIEEYTYPSALQSM-EALG--------------VKIIPVKMD--- 178 (472)
T ss_pred ceEEEecCCchHHHHHHHHhh--------cCCCceEEecccchHHHHhc-cccC--------------ceEEecccc---
Confidence 389999999999999999886 44578888777775442111 1111 112222111
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhCCC-----cEEEEEEcc-ccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcC
Q 013204 176 AHPGETEEEYSTRLANNLEDLILKEGPE-----TIAAFIAEP-VIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA 249 (447)
Q Consensus 176 ~~~~~~~~~~~~~~~~~le~~l~~~~~~-----~~a~vi~ep-v~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g 249 (447)
-++. +.+.|++.+.+.++. ...++-.-| -|+.+|.. .+.+--++|.+|+|+|++++|-||+|-
T Consensus 179 -~~Gi--------~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~t-ls~errk~iy~LArKyDfLIVeDdpYy- 247 (472)
T KOG0634|consen 179 -QDGI--------DPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNT-LSLERRKKIYQLARKYDFLIVEDDPYY- 247 (472)
T ss_pred -CCCC--------CHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCc-cCHHHHHHHHHHHHHcCEEEEecCccc-
Confidence 0111 138888888765432 233344444 46666654 467888999999999999999999986
Q ss_pred CCcccc--------ccccc-----------cCCCC--CCe---eeecccCCCcccceeEEEeChhHHHHhhhccCCCCcc
Q 013204 250 FGRLGT--------MFGCD-----------KYSIK--PDL---VSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSF 305 (447)
Q Consensus 250 ~g~~g~--------~~~~~-----------~~~~~--~d~---v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~ 305 (447)
|-..+. .-++. ...+. -.+ -+|||-++-| +|+|++.+++-+++.+...
T Consensus 248 ~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPG-lRlG~it~~~~~l~ril~~------- 319 (472)
T KOG0634|consen 248 FLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPG-LRLGWITGNSLFLKRILDL------- 319 (472)
T ss_pred eeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhcCc-ceeEEeecCHHHHHHHhhh-------
Confidence 323221 00011 11111 112 2799999877 8999999999887776532
Q ss_pred CcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHH-------HHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCC-C
Q 013204 306 SHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNK-------IAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNK-S 376 (447)
Q Consensus 306 ~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~-------~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~-~ 376 (447)
....|.+++.+++....+.|+...++++++.+.+ +...+...|.+- +..-.....+..|.++++.++-.. .
T Consensus 320 ae~~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~~~ 399 (472)
T KOG0634|consen 320 AEVATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYINFD 399 (472)
T ss_pred cceeecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEecccccc
Confidence 2334555666777777777776666544433333 333333444332 222122223445777777775110 0
Q ss_pred CCCCCCCCcchHHHHHHHHHHcCceEEeeC-----------C-EEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 377 PNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-----------D-NIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-----------~-~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.+..++ ...+.+...+.++||.+..+. . .+|++.++ .+.|++++++++|..++++.
T Consensus 400 ~~~~i~---q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~-a~~e~l~~g~~rf~~~ike~ 467 (472)
T KOG0634|consen 400 TKKSIN---QIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIAF-AEPEKLDEGIERFGSVIKEH 467 (472)
T ss_pred cccchH---HHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEeec-CCHHHHHHHHHHHHHHHHHH
Confidence 111111 123345667789999987541 2 58888664 57779999999999999874
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.8e-11 Score=115.37 Aligned_cols=238 Identities=13% Similarity=0.126 Sum_probs=142.0
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 154 (447)
.++-...|+++++++- +-+.+++++||+.|+..++...+ ..+++||+....|.+....... ..
T Consensus 60 ~nPt~~~le~~la~LE---g~~~a~~~~SGmaAi~~~~~~ll--------~~GD~Vv~~~~~Yg~t~~l~~~------~l 122 (395)
T PRK08114 60 GTLTHFSLQEAMCELE---GGAGCALYPCGAAAVANAILAFV--------EQGDHVLMTGTAYEPTQDFCSK------IL 122 (395)
T ss_pred CChhHHHHHHHHHHHh---CCCeEEEEhHHHHHHHHHHHHHc--------CCCCEEEEeCCCcHHHHHHHHH------HH
Confidence 3455777889998873 44578899999999999887553 3346788877788766432210 00
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
+.+++. +..++..+ .+++++.+. +++++|.+|.+.+..|.+.+ +++|+++|
T Consensus 123 ~~~Gi~---v~~vd~~d------------------~~~l~~~l~----~~TrlV~~EtpsNp~~~v~D----I~~Ia~ia 173 (395)
T PRK08114 123 SKLGVT---TTWFDPLI------------------GADIAKLIQ----PNTKVVFLESPGSITMEVHD----VPAIVAAV 173 (395)
T ss_pred HhcCcE---EEEECCCC------------------HHHHHHhcC----CCceEEEEECCCCCCCEeec----HHHHHHHH
Confidence 011111 11111100 256777664 35789999999888888887 99999999
Q ss_pred HhcC--CEEEEehhhcCCCccccccccccCCCCCCeeeec--ccCCCcc-cceeEEEeChhHHHHhhhccCCCCccCcCC
Q 013204 235 KKYD--ILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAY-MPIGAILVSPEVSEVIHSQSNTLGSFSHGF 309 (447)
Q Consensus 235 ~~~g--~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l~gg~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (447)
+++| +++++|.+++ . | ..++-..+-.|+++.| |.++|.. ...|+++.++++.+.+.... ...+
T Consensus 174 ~~~g~g~~lvVDnT~a-~---p--~~~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~-----~~~G- 241 (395)
T PRK08114 174 RSVNPDAVIMIDNTWA-A---G--VLFKALDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENS-----YLMG- 241 (395)
T ss_pred HHhCCCCEEEEECCCc-c---c--cccCHHHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHH-----Hhcc-
Confidence 9985 9999999986 2 1 1234444558988764 9888742 35566677777655554210 0111
Q ss_pred CCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhcc-----CCCcee----------eEeeeeeEEEEEeec
Q 013204 310 TYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFS-----DSPIIG----------EIRGTGLILGTEFAD 373 (447)
Q Consensus 310 t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~~~----------~~~~~g~~~~i~~~~ 373 (447)
...+|..+.-.+..|+-+. -..++..++...+.+.|++-+ .+|... ...+.|.++.+++..
T Consensus 242 -~~~~p~~a~l~~rgl~TL~--lR~~~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~ 317 (395)
T PRK08114 242 -QMVDADTAYMTSRGLRTLG--VRLRQHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKK 317 (395)
T ss_pred -CCCCHHHHHHHHcCCCcHH--HHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecC
Confidence 2345655554444443221 123444555555666665431 112110 123568888888863
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5e-09 Score=97.18 Aligned_cols=332 Identities=19% Similarity=0.177 Sum_probs=183.2
Q ss_pred CCHHHHHHHHHHHhc-CCccc---ccCcC--CChHHHHHH-HHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhc
Q 013204 50 SEPRLVAAATAQLNT-LPFYH---SFWNR--TTKPSLDLA-KELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNAL 122 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~-~~~~~---~~~~~--~~~~~~~l~-~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~ 122 (447)
..|.|.+|+...+.+ +.-++ ++.++ ..+...+++ ++.+++|. .+...|- -.||+.||.++...+.
T Consensus 38 ~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFg-a~~anVQ-PhSGs~AN~av~~All------ 109 (413)
T COG0112 38 TSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFG-AEYANVQ-PHSGSQANQAVYLALL------ 109 (413)
T ss_pred CCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhC-CCccccC-CCCchHHHHHHHHHHc------
Confidence 568999988776644 22111 11121 233444444 34444542 2222222 2489999999998764
Q ss_pred CCCCcceEEEEcCCCccc-hhh-hhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhh
Q 013204 123 GRPNKKKFIARQKSYHGS-TLI-AASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE 200 (447)
Q Consensus 123 ~~~~~~~vi~~~~~yhg~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~ 200 (447)
.+.++|+.++-+.=|+ +.+ ..+.+| ..+..++++-. . +....+.++++++....
T Consensus 110 --~pGDtimgm~l~~GGHltHg~~v~~sG------------~~~~~v~Y~vd----~------et~~IDyD~~~k~a~e~ 165 (413)
T COG0112 110 --QPGDTIMGLDLSHGGHLTHGSPVNFSG------------KLFNVVSYGVD----P------ETGLIDYDEVEKLAKEV 165 (413)
T ss_pred --CCCCeEecccCCCCCcccCCCCCCccc------------eeEEeEecccc----c------ccCccCHHHHHHHHHHh
Confidence 4468888876444333 111 111121 11222222211 0 11122358888888876
Q ss_pred CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-CCCccccccccccCCCCCCeeeec--ccCCC
Q 013204 201 GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-AFGRLGTMFGCDKYSIKPDLVSFA--KALSS 277 (447)
Q Consensus 201 ~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-g~g~~g~~~~~~~~~~~~d~v~~s--K~l~g 277 (447)
+| +.||.=.+ ..+-.--+++++++|++.|++|.+|-+|- |+-..| .++..=-..|+||-+ |.|-|
T Consensus 166 kP---K~ii~G~S------aY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G---~~p~P~~~AdvVTtTTHKTlrG 233 (413)
T COG0112 166 KP---KLIIAGGS------AYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGG---VHPNPLPHADVVTTTTHKTLRG 233 (413)
T ss_pred CC---CEEEECcc------ccccccCHHHHHHHHHHhCceEEehHHHHHHHHhcc---cCCCCCCccceEeCCcccCCCC
Confidence 66 34444221 22222238999999999999999998875 442222 122111127888765 89988
Q ss_pred cccceeEEEeCh-hHHHHhhhccCCCCccCcCCCCCCcHH-HHHHHHHHHHHHhhhc---HHHHHHHHHHHHHHhHhhcc
Q 013204 278 AYMPIGAILVSP-EVSEVIHSQSNTLGSFSHGFTYSGHPV-SCAVAIEALKIYKERN---IVEQVNKIAPKFQDGVKAFS 352 (447)
Q Consensus 278 g~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~aa~a~l~~~~~~~---~~~~~~~~~~~l~~~L~~l~ 352 (447)
.+-|.++++. ++.+.+... ...+ ..+++.+ .+++-..+++...+++ ...++.++.+.|.+.|.+.
T Consensus 234 --PrGG~Il~~~eel~kkin~a------VFPg-~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~- 303 (413)
T COG0112 234 --PRGGIILTNDEELAKKINSA------VFPG-LQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKER- 303 (413)
T ss_pred --CCceEEEeccHHHHHHhhhh------cCCc-cCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHc-
Confidence 5788888885 788888642 2211 2222222 3333333444444444 4566777778888888764
Q ss_pred CCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEE----ee-------CCEEEEecCC----CC
Q 013204 353 DSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR----VS-------GDNIMMSPPF----IM 417 (447)
Q Consensus 353 ~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~----~~-------g~~iR~~~~~----~~ 417 (447)
++.++..-+ ...++.+++..... ........|.+-||.+- |+ .+.||+..|. .+
T Consensus 304 G~~vvsGgT-dnHl~lVDl~~~~~----------~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~ 372 (413)
T COG0112 304 GFKVVSGGT-DNHLVLVDLRSKGL----------TGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGF 372 (413)
T ss_pred CCeEecCCc-cceEEEEEcccCCC----------CHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCC
Confidence 444443211 12344566663211 13345556667788765 22 1569998774 35
Q ss_pred CHHHHHHHHHHHHHHHH-------HHHHHHHHhhhc
Q 013204 418 SPEEVDELISKYGKALK-------ATEERVKELKSQ 446 (447)
Q Consensus 418 t~e~i~~~~~~l~~~l~-------~~~~~~~~~~~~ 446 (447)
.++|+.++.+.+.+++. +++++...++++
T Consensus 373 ~e~e~~~Ia~~I~~vl~~~~~~~~~vk~~V~~l~~~ 408 (413)
T COG0112 373 GEAEMEEIADLIADVLDGLKDVPAEVKEEVAELCRR 408 (413)
T ss_pred CHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence 78888888888888775 456666666654
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.7e-09 Score=99.95 Aligned_cols=357 Identities=15% Similarity=0.130 Sum_probs=190.9
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHH
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEAND 109 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~ 109 (447)
.....|+|+.|-.++. --.++..+||.. +.-.+ +-++...+|++..++++ +++.++++.+|..++.
T Consensus 38 ~s~dV~IDLrSDTgT~---apS~~m~aAM~~----GDD~Y----~gdpSv~~Lee~vael~---G~E~alpthqGRgaE~ 103 (467)
T TIGR02617 38 DSEDVFIDLLTDSGTG---AVTQSMQAAMMR----GDEAY----SGSRSYYALAESVKNIF---GYQYTIPTHQGRGAEQ 103 (467)
T ss_pred CCCCeEEECccCCCCC---CCCHHHHHHHHc----CCccc----ccCchHHHHHHHHHHHh---CCceEEECCCCchHHH
Confidence 3456789999887652 124677777765 21111 13445678999999997 7778999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEE------EEcCCCccch-hhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCCh
Q 013204 110 TQVKLVWYYNNALGRPNKKKFI------ARQKSYHGST-LIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETE 182 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi------~~~~~yhg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (447)
.+.+.... ++.+.++ ++.+.||-.+ .+....+|.....- +.......+.+..++
T Consensus 104 Il~~~~~~-------~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l----~~~ea~~~~~~~~fk-------- 164 (467)
T TIGR02617 104 IYIPVLIK-------KREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNV----YTKEAFDTGVRYDFK-------- 164 (467)
T ss_pred HHHHhhcc-------cccccccccccccccceEEEEecchHHHHHcCceeecc----cchhhcccccCCCCC--------
Confidence 98886531 1112122 1223444442 23333333211100 000000000001111
Q ss_pred hHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc----CC------Cc
Q 013204 183 EEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC----AF------GR 252 (447)
Q Consensus 183 ~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~----g~------g~ 252 (447)
+..+++.|++.+...+++++..+.++-.++..|..+.+.+.+++++++|++||+.+++|-+-- -| +.
T Consensus 165 ---G~~dl~~le~~I~~~g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a 241 (467)
T TIGR02617 165 ---GNFDLEGLERGIEEVGPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEY 241 (467)
T ss_pred ---CCcCHHHHHHHHhhcCCCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhh
Confidence 111258888888765556677777777777777788899999999999999999999996431 00 11
Q ss_pred ccccc---ccccCCCCCCee--eecccCCCcccceeEE-EeChh-HHHHhhhccCCCCccCcCCCCCCcHH-HHHHHHHH
Q 013204 253 LGTMF---GCDKYSIKPDLV--SFAKALSSAYMPIGAI-LVSPE-VSEVIHSQSNTLGSFSHGFTYSGHPV-SCAVAIEA 324 (447)
Q Consensus 253 ~g~~~---~~~~~~~~~d~v--~~sK~l~gg~~~~g~~-~~~~~-~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~aa~a~ 324 (447)
.+... +.+.+ -..|.+ ++||+++ .|+|.+ +++++ +.+.+..-....=.+...-|+++-.- -+.+....
T Consensus 242 ~~~si~eI~rE~~-~~aDsvt~slsKglg---ApvGg~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~G 317 (467)
T TIGR02617 242 KNWSIEQITRETY-KYADMLAMSAKKDAM---VPMGGLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVG 317 (467)
T ss_pred cCCCHHHHHHHhh-ccCCEEEEEcCCCCC---CcccceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhh
Confidence 11110 00101 125655 5678876 466654 45544 23333221111111223335554322 12222224
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeec--CCCCCCCCCCCcchHHHHHHH-HHHcCce
Q 013204 325 LKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFAD--NKSPNEPFPPEWGIGAYFGAQ-CEKHGML 401 (447)
Q Consensus 325 l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~-l~~~Gi~ 401 (447)
|+....++.+.+.-...++|.+.|.+. +.|++. +-|.+. .++... +.-+...|+ +..+.-. -++-||-
T Consensus 318 l~e~~~~~yl~~ri~qv~yl~~~L~~~-Gvpi~~-~Gghav--~iDa~~~lphip~~~fp-----a~al~~~ly~~~GiR 388 (467)
T TIGR02617 318 LYDGMNLDWLAYRINQVQYLVNGLEEI-GVVCQQ-AGGHAA--FVDAGKLLPHIPADQFP-----AHALACELYKVAGIR 388 (467)
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhC-CCcEEe-cCccEE--EEehhhhCCCCChhhCc-----HHHHHHHHHHHcCcc
Confidence 554445566665566678888888775 555544 333332 233221 111111122 2233333 3455655
Q ss_pred EEeeC------------------CEEEEecCC-CCCHHHHHHHHHHHHHHHHH
Q 013204 402 VRVSG------------------DNIMMSPPF-IMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 402 ~~~~g------------------~~iR~~~~~-~~t~e~i~~~~~~l~~~l~~ 435 (447)
....| +.+|+..|- .-|.+++|.+++++..+.+.
T Consensus 389 ~~e~G~~~~~rd~~~~~~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~ 441 (467)
T TIGR02617 389 AVEIGSLLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_pred eEeecceecccCCCCCccCCCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence 33111 458998774 45999999999999887755
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.9e-09 Score=103.32 Aligned_cols=278 Identities=13% Similarity=0.067 Sum_probs=152.5
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhh-cccCCccccCCCCCCCCcceecCCCCcccCCCCCCC
Q 013204 103 SGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAA-SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGET 181 (447)
Q Consensus 103 sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (447)
||+.||.+++..++ .++++|+.++..+-|+..-.. ...+... ......+..++++-.
T Consensus 222 SGs~AN~aV~~ALl--------~PGD~IL~ldl~~GGHlshg~~~~~g~~v-----s~sG~~~~~vpY~~d--------- 279 (586)
T PLN02271 222 SCTSANFAVYTGLL--------LPGDRIMGLDSPSGGHMSHGYYTPGGKKV-----SGASIFFESLPYKVN--------- 279 (586)
T ss_pred cHHHHHHHHHHHhc--------CCCCEEEEecCCCCCchhccccccccccc-----ccccceEEEEEcccc---------
Confidence 89999999998664 446899998876655532111 1011000 000011122222110
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccccccc
Q 013204 182 EEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDK 261 (447)
Q Consensus 182 ~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~ 261 (447)
++....+.+++++.... .++++|++..+... ...+ +++++++|+++|++|++|-+|. .|..... .+..
T Consensus 280 -~~~g~IDyd~lek~a~~---~rPKLII~g~Sayp--r~~D----~~~i~eIAdevGA~LmvD~AH~-aGLIa~g-~~~s 347 (586)
T PLN02271 280 -PQTGYIDYDKLEEKALD---FRPKILICGGSSYP--REWD----YARFRQIADKCGAVLMCDMAHI-SGLVAAK-ECVN 347 (586)
T ss_pred -cccCccCHHHHHHHhhh---cCCeEEEECchhcc--CcCC----HHHHHHHHHHcCCEEEEECccc-ccccccC-cCCC
Confidence 00111234777775543 35678888664332 1333 8999999999999999999997 4444321 1111
Q ss_pred CCCCCCeeeec--ccCCCcccceeEEEeChh--------------------HHHHhhhccCCCCccCcCCCCCCcHHHHH
Q 013204 262 YSIKPDLVSFA--KALSSAYMPIGAILVSPE--------------------VSEVIHSQSNTLGSFSHGFTYSGHPVSCA 319 (447)
Q Consensus 262 ~~~~~d~v~~s--K~l~gg~~~~g~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 319 (447)
.-...|+++++ |.|.|+ +-|+++.+++ +.+.+.. ....+..-++....++
T Consensus 348 P~~~aDvvt~TTHKtLrGP--rGG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~------aVfPglqgGphn~~IA 419 (586)
T PLN02271 348 PFDYCDIVTSTTHKSLRGP--RGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINF------AVFPSLQGGPHNNHIA 419 (586)
T ss_pred CCcCCcEEEeCCcccCCCC--CceEEEecccccccccCCccccccccccHHHHHHhhc------ccCCccccChhHHHHH
Confidence 11237988765 999885 4477777654 2233321 1111111111222233
Q ss_pred HHHHHHHHHhhhc---HHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH
Q 013204 320 VAIEALKIYKERN---IVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE 396 (447)
Q Consensus 320 aa~a~l~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 396 (447)
+-..+++.+..++ +.+++.++.+.|.+.|.+. ++.++..-+ ...++.+++..... .+....+.|.
T Consensus 420 alAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~~-G~~vv~ggT-dnHlvLvDl~~~g~----------~G~~ae~~Le 487 (586)
T PLN02271 420 ALAIALKQVATPEYKAYMQQVKKNAQALASALLRR-KCRLVTGGT-DNHLLLWDLTTLGL----------TGKNYEKVCE 487 (586)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHC-CCeEeeCCC-CcceeeecCcccCC----------CHHHHHHHHH
Confidence 3334566554444 5567777778888887764 445443221 12344556543210 1344556677
Q ss_pred HcCceEEe----e------CCEEEEecCC----CCCHHHHHHHHHHHHHHHH
Q 013204 397 KHGMLVRV----S------GDNIMMSPPF----IMSPEEVDELISKYGKALK 434 (447)
Q Consensus 397 ~~Gi~~~~----~------g~~iR~~~~~----~~t~e~i~~~~~~l~~~l~ 434 (447)
+-||.+-- + .+.||+..+. .+.++|++++.+.|.++++
T Consensus 488 ~~~I~~Nkn~iP~d~~~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 488 MCHITLNKTAIFGDNGTISPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred HcCeEeccccCCCCCCCCCCCcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 77887742 1 1468998763 3577888888888877765
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.6e-10 Score=110.58 Aligned_cols=159 Identities=16% Similarity=0.226 Sum_probs=97.1
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh---hcccCCc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA---ASLSGLP 151 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~---~~~~~~~ 151 (447)
..+...++++.++++. +.+..++++||+.|+..++..+. .++++||+....|.+..... +...|..
T Consensus 67 ~~pt~~~le~~la~l~---g~~~~v~fsSG~~Ai~~al~~ll--------~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~ 135 (437)
T PRK05613 67 TNPTVEALENRIASLE---GGVHAVAFASGQAAETAAILNLA--------GAGDHIVTSPRLYGGTETLFLVTLNRLGIE 135 (437)
T ss_pred cChHHHHHHHHHHHHh---CCCeEEEeCCHHHHHHHHHHHhc--------CCCCEEEECCCccHHHHHHHHHHHHhcCeE
Confidence 3456778888888886 33578888899999998887543 33467888777776652211 1111110
Q ss_pred cccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHH
Q 013204 152 ALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 231 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~ 231 (447)
+..++.+. +.+++++.+. + ++++|++|...+..|.+.+ +++|+
T Consensus 136 ------------v~~vd~~~-----------------d~e~l~~~l~---~-~tk~V~~e~~~Np~~~v~d----i~~I~ 178 (437)
T PRK05613 136 ------------VTFVENPD-----------------DPESWQAAVQ---P-NTKAFFGETFANPQADVLD----IPAVA 178 (437)
T ss_pred ------------EEEECCCC-----------------CHHHHHHhCC---c-cCeEEEEECCCCCCCcccC----HHHHH
Confidence 11111000 1366777664 2 4556777766555456666 99999
Q ss_pred HHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec--ccCCCcccceeEEEe
Q 013204 232 AVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMPIGAILV 287 (447)
Q Consensus 232 ~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l~gg~~~~g~~~~ 287 (447)
++|+++|+++|+|.+++ .+.. +....+-.|++++| |-++|.+-.+|.++.
T Consensus 179 ~la~~~gi~livD~t~a-~g~~-----~~p~~~GaDivv~S~~K~l~G~gd~~gG~vv 230 (437)
T PRK05613 179 EVAHRNQVPLIVDNTIA-TAAL-----VRPLELGADVVVASLTKFYTGNGSGLGGVLI 230 (437)
T ss_pred HHHHHcCCeEEEECCCc-cccc-----cChHHhCCCEEEeeccceecCCCcceeEEEE
Confidence 99999999999999985 3221 11112235888765 888763234444443
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.7e-09 Score=105.12 Aligned_cols=288 Identities=16% Similarity=0.088 Sum_probs=157.6
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHh-----cCC
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNA-----LGR 124 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~-----~~~ 124 (447)
-++...+++...+.+.......+........+....+.+++.......-.||+||||||..|+.+++..... .+.
T Consensus 74 ~~~~a~~~~~~~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~ 153 (460)
T COG0076 74 VPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAESGK 153 (460)
T ss_pred CHHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 355666666666654222111111233344455556666654334446789999999999999998765531 122
Q ss_pred CCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCc
Q 013204 125 PNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPET 204 (447)
Q Consensus 125 ~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~ 204 (447)
.++...|++....|-+..-+...-|.....-... +. ....+.+++++.+... +
T Consensus 154 ~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~---------~~---------------~~~id~~~l~~~i~~~---t 206 (460)
T COG0076 154 PGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTV---------PT---------------DYRIDVDALEEAIDEN---T 206 (460)
T ss_pred cCCCCeEEecCcchhHHHHHHHHhCCCceeEEec---------cC---------------ccccCHHHHHHHHHhh---c
Confidence 2223356667788888765555444321110000 00 0112248888888753 2
Q ss_pred EE-EEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccc-cCCC-CCCeeeec--ccCCCcc
Q 013204 205 IA-AFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCD-KYSI-KPDLVSFA--KALSSAY 279 (447)
Q Consensus 205 ~a-~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~-~~~~-~~d~v~~s--K~l~gg~ 279 (447)
+. +|+........|.+-| +++|.++|++|++++++|.++.|+-..=...... .+++ ..|-++++ |-....
T Consensus 207 ~~g~vV~~aGtT~~G~iDd----i~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP- 281 (460)
T COG0076 207 IGGVVVGTAGTTDTGSIDD----IEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAP- 281 (460)
T ss_pred cCceEEEEecCCCCCccCC----HHHHHHHHHHcCCcEEEEccccceeecccCccchhhcCCCCceEEEECcccccCCC-
Confidence 22 2555555555666666 9999999999999999999998773210000112 1344 36777776 544444
Q ss_pred cceeEEEeChh--HHHHhhhccCCCC--ccCcCC-CCCCcHHHHHHHHHHHHHHhhhcHHH---HHHHHHHHHHHhHhhc
Q 013204 280 MPIGAILVSPE--VSEVIHSQSNTLG--SFSHGF-TYSGHPVSCAVAIEALKIYKERNIVE---QVNKIAPKFQDGVKAF 351 (447)
Q Consensus 280 ~~~g~~~~~~~--~~~~~~~~~~~~~--~~~~~~-t~~~~~~~~~aa~a~l~~~~~~~~~~---~~~~~~~~l~~~L~~l 351 (447)
.+.|+++.+.+ +.+.+........ ...... .++.+....++.++.++.+..+++.+ +..++.+++.+.|+++
T Consensus 282 ~~~G~il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~ 361 (460)
T COG0076 282 IGCGVVLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKL 361 (460)
T ss_pred CCceEEEEECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 68888888654 4444432211111 111100 11112224555667777776666544 4447778888888776
Q ss_pred cCCCceeeEeeeeeEEEEEe
Q 013204 352 SDSPIIGEIRGTGLILGTEF 371 (447)
Q Consensus 352 ~~~~~~~~~~~~g~~~~i~~ 371 (447)
..+.++. ++....+.+.+
T Consensus 362 ~~~e~~~--~p~l~~V~fr~ 379 (460)
T COG0076 362 GDFELVN--EPELPIVAFRL 379 (460)
T ss_pred CCcEeec--CCccceEEEEc
Confidence 3233222 23344445554
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.27 E-value=2e-09 Score=103.96 Aligned_cols=236 Identities=17% Similarity=0.218 Sum_probs=134.9
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 154 (447)
.++-...+++.++++- +-+.++.++||..|+..++.... +..++|++....|++........-
T Consensus 53 gnPt~~~le~~la~Le---~g~~a~~~~SGmaAi~~~l~~ll--------~~Gd~iv~~~~~Y~~t~~~~~~~l------ 115 (386)
T PF01053_consen 53 GNPTVRALEQRLAALE---GGEDALLFSSGMAAISAALLALL--------KPGDHIVASDDLYGGTYRLLEELL------ 115 (386)
T ss_dssp C-HHHHHHHHHHHHHH---T-SEEEEESSHHHHHHHHHHHHS---------TTBEEEEESSSSHHHHHHHHHCH------
T ss_pred ccccHHHHHHHHHHhh---cccceeeccchHHHHHHHHHhhc--------ccCCceEecCCccCcchhhhhhhh------
Confidence 4566778889998884 34679999999999999988653 235789999999988642221100
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
..+++ .+..++..+ .+++++.+. +++++|++|...+....++. +++|+++|
T Consensus 116 ~~~gv---~v~~~d~~d------------------~~~l~~~l~----~~t~~v~~EspsNP~l~v~D----l~~i~~~a 166 (386)
T PF01053_consen 116 PRFGV---EVTFVDPTD------------------LEALEAALR----PNTKLVFLESPSNPTLEVPD----LEAIAKLA 166 (386)
T ss_dssp HHTTS---EEEEESTTS------------------HHHHHHHHC----TTEEEEEEESSBTTTTB-------HHHHHHHH
T ss_pred cccCc---EEEEeCchh------------------HHHHHhhcc----ccceEEEEEcCCCccccccc----HHHHHHHH
Confidence 00111 111222211 377777776 47889999998776654554 99999999
Q ss_pred HhcC-CEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCc-ccceeEEEeCh--hHHHHhhhccCCCCccCcC
Q 013204 235 KKYD-ILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSA-YMPIGAILVSP--EVSEVIHSQSNTLGSFSHG 308 (447)
Q Consensus 235 ~~~g-~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg-~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~ 308 (447)
+++| +++++|.+... +..++-+..-.|+++ .+|-++|. -.-.|+++.+. ++.+.++... ...+
T Consensus 167 ~~~g~~~~vVDnT~at------p~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~-----~~~G 235 (386)
T PF01053_consen 167 KEHGDILVVVDNTFAT------PYNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFR-----RLLG 235 (386)
T ss_dssp HHTTT-EEEEECTTTH------TTTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHH-----HHHT
T ss_pred HHhCCceEEeeccccc------eeeeccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchh-----hhcC
Confidence 9999 99999988642 122232333478876 45888762 12356666554 6666654321 0111
Q ss_pred CCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceee------------------EeeeeeEEEEE
Q 013204 309 FTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGE------------------IRGTGLILGTE 370 (447)
Q Consensus 309 ~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~------------------~~~~g~~~~i~ 370 (447)
...+|..+...+..++-+ .-..++..++...+.+.|++- |.+.. ..+.|.++.++
T Consensus 236 --~~~~p~da~ll~rgl~Tl--~~R~~~~~~nA~~lA~~L~~h---p~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~ 308 (386)
T PF01053_consen 236 --ATLSPFDAWLLLRGLRTL--PLRMERQNENAEALAEFLEEH---PKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFE 308 (386)
T ss_dssp ---B--HHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHTS---TTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEE
T ss_pred --ccchHHHHHHHhcCCCcH--HHHHHHHHHHHHHHHHHHHhC---CCCCeEEEcccccccceeeeeecccccCceeEEE
Confidence 122444444333333321 112345555666666666543 33322 22556688888
Q ss_pred eecC
Q 013204 371 FADN 374 (447)
Q Consensus 371 ~~~~ 374 (447)
+...
T Consensus 309 l~~~ 312 (386)
T PF01053_consen 309 LKGG 312 (386)
T ss_dssp ESSH
T ss_pred eccc
Confidence 8764
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.2e-10 Score=108.93 Aligned_cols=234 Identities=15% Similarity=0.183 Sum_probs=134.6
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 154 (447)
..+...++++.++++. +.+.++.++||+.|+..++.... ..+++||+....|.+........-
T Consensus 62 ~~P~~~~lE~~la~le---g~~~av~~sSG~aAi~~al~all--------~~GD~Vl~~~~~yg~t~~~~~~~~------ 124 (384)
T PRK06434 62 GNPTVQAFEEKYAVLE---NAEHALSFSSGMGAITSAILSLI--------KKGKRILSISDLYGQTFYFFNKVL------ 124 (384)
T ss_pred CChhHHHHHHHHHHHh---CCCcEEEeCCHHHHHHHHHHHHh--------CCCCEEEEecCccchHHHHHHHHH------
Confidence 4456788999999885 44578999999999999998653 335778887777755532221100
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
..++. .+..++..+. +.++ + .++++.+|.+|.+.+..+.+++ +++|+++|
T Consensus 125 ~~~Gi---~v~fvd~~~~------------------~~~~--l---~~~~tklv~~e~~snpt~~v~D----i~~I~~la 174 (384)
T PRK06434 125 KTLGI---HVDYIDTDRL------------------NSLD--F---DPSNYDLIYAESITNPTLKVPD----IKNVSSFC 174 (384)
T ss_pred HhcCc---EEEEECCCCh------------------hhee--e---cCCCeeEEEEEcCCCCCceeec----HHHHHHHH
Confidence 00110 1122222110 1111 1 1345778899988766665555 99999999
Q ss_pred HhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec--ccCCCcc-cceeEEEe-ChhHHHHhhhccCCCCccCcCCC
Q 013204 235 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAY-MPIGAILV-SPEVSEVIHSQSNTLGSFSHGFT 310 (447)
Q Consensus 235 ~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l~gg~-~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~t 310 (447)
++++ +++|.++. -+.. ....+...|++++| |.++|.. .-.|+++. ++++.+.++.. ....-
T Consensus 175 ~~~~--lvVD~t~~-s~~~-----~~pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~-------~~~~G 239 (384)
T PRK06434 175 HEND--VIVDATFA-SPYN-----QNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVER-------RKTLG 239 (384)
T ss_pred HHcC--eEEECCCC-Cccc-----CCchhcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHH-------HHhcC
Confidence 9998 46698863 2122 22234458999876 8887631 22455555 45565655421 00112
Q ss_pred CCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCC-----Ccee----eEeeeeeEEEEEee
Q 013204 311 YSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-----PIIG----EIRGTGLILGTEFA 372 (447)
Q Consensus 311 ~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~-----~~~~----~~~~~g~~~~i~~~ 372 (447)
...+|+.++.++..|+-+ +...++..++...+.+.|+..+.. |... ...|.|.++.+++.
T Consensus 240 ~~~~~~~A~l~~~gL~tL--~~R~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~ 308 (384)
T PRK06434 240 SNPDPIQAYLALRGLKTL--GLRMEKHNKNGMELARFLRDSKKISNVYYPDTEIGKKVLRGFGGMLSFELR 308 (384)
T ss_pred CCCCHHHHHHHHhCCCcH--HHHHHHHHHHHHHHHHHHHcCCCccEEECCChHHHHHhcCCCCceEEEEEC
Confidence 234566655555555433 234566666777777777654221 1110 12356888888885
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.23 E-value=3e-09 Score=102.31 Aligned_cols=333 Identities=11% Similarity=0.017 Sum_probs=186.1
Q ss_pred EEEecCCccccccCCCCCHHHHHHHHHHHhcCC--------cccccCcCCChHHHHHHHHHHHhcCc-CCCCeEEEeCCh
Q 013204 34 KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP--------FYHSFWNRTTKPSLDLAKELLEMFTA-SKMAKVFFTNSG 104 (447)
Q Consensus 34 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~v~~~~sG 104 (447)
+.+.|..|-.. -+++|++++.+.+-+.. .+|+.. --.+...+..+.+.+++.- .+.+-+++..||
T Consensus 7 ~~~~f~pGP~~-----lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~-~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsg 80 (365)
T PLN02452 7 RVFNFSAGPAT-----LPANVLAKAQAELYNWEGSGMSVMEMSHRGK-EFLSIIQKAEADLRELLDIPDNYEVLFLQGGA 80 (365)
T ss_pred ceEeeeCCCCC-----CCHHHHHHHHHHHhcccccCccccccCCCch-HHHHHHHHHHHHHHHHhCCCCCceEEEEeCcc
Confidence 34556555322 47999999988764311 112110 0123445666677777641 223334555799
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcc-cCCccccCCCCCCCCcceecCCCCcccCCCCCCChh
Q 013204 105 SEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASL-SGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEE 183 (447)
Q Consensus 105 seA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (447)
|.+++.++..+. .++++++++..++-|........ -+..... ...+. ..+. ..| +
T Consensus 81 t~~~ea~~~nl~--------~~~~~~l~~~~G~fg~r~~~~a~~~g~~~~~----------~~~~~-~~~~-~~~--~-- 136 (365)
T PLN02452 81 STQFAAIPLNLC--------KPGDKADFVVTGSWSKKAAKEAKKYCKTNVI----------ASGKD-EKYT-KIP--S-- 136 (365)
T ss_pred HHHHHHHHHhcC--------CCCCeEEEEECCHHHHHHHHHHHHhCCCcEE----------EecCC-CCCC-CCC--C--
Confidence 999999988653 23356777766665653222221 1111000 00000 0000 000 0
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCC
Q 013204 184 EYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYS 263 (447)
Q Consensus 184 ~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~ 263 (447)
++++ .. +..+..|.+.......|....+ ++++. ++++|+|-+++ +| +.+...+.++
T Consensus 137 ------~~~~----~~--~~~~~~v~~~hnETstGv~~~~---~~~i~------~~~lvVDa~Ss-~g--~~pidv~~~~ 192 (365)
T PLN02452 137 ------VSEW----EL--TPDAKFVHICANETIHGVEFKD---YPDVG------NVPLVADMSSN-FL--SKPVDVSKYG 192 (365)
T ss_pred ------hHHc----CC--CCCCcEEEECCCCCCCcEecCc---ccccC------CCeEEEECCcc-cc--CcccCHHHcC
Confidence 1222 11 2345667777777777764222 33332 38999999987 43 2244445555
Q ss_pred CCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCc----cCcCCCC-CCcHHHHHHHHHHHHHHhhh-c---HH
Q 013204 264 IKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGS----FSHGFTY-SGHPVSCAVAIEALKIYKER-N---IV 334 (447)
Q Consensus 264 ~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~t~-~~~~~~~~aa~a~l~~~~~~-~---~~ 334 (447)
+ |+.+..|.++ + .++|+++.++++++.........-. ....+++ +++..++.+..++|+.++++ + ..
T Consensus 193 v--~~~saqK~lG-P-~Gl~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~ 268 (365)
T PLN02452 193 V--IYAGAQKNVG-P-SGVTIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAME 268 (365)
T ss_pred E--EEEecccccC-C-CCeEEEEEcHHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHH
Confidence 4 6666669884 5 6799999999998775432110000 0112233 45556777777889988764 3 45
Q ss_pred HHHHHHHHHHHHhHhhccCC-CceeeEe-eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC---CEE
Q 013204 335 EQVNKIAPKFQDGVKAFSDS-PIIGEIR-GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG---DNI 409 (447)
Q Consensus 335 ~~~~~~~~~l~~~L~~l~~~-~~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g---~~i 409 (447)
++.+++.+++++.|++..+. ....... .....+.+.+.+.. ....|.+.+.++|++..++. +.+
T Consensus 269 ~r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~vsF~~~~~~-----------~~~~f~~~~~~~g~~~~~G~r~~gg~ 337 (365)
T PLN02452 269 KRNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNVPFTLGGSE-----------LEAEFVKEAAKAGMVQLKGHRSVGGM 337 (365)
T ss_pred HHHHHHHHHHHHHHHhCCCcccCCCChHHhCCeEEEEEcCCch-----------hHHHHHHHHHHCCCcccCCccccCce
Confidence 67777778888888765322 1111101 11223344433321 35679999999999987653 339
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 410 MMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 410 R~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
|++.--.++.++++.+++.+++.-++
T Consensus 338 R~s~yna~~~~~v~~L~~~m~~f~~~ 363 (365)
T PLN02452 338 RASIYNAMPLAGVEKLVAFMKDFQAK 363 (365)
T ss_pred EEECcCCCCHHHHHHHHHHHHHHHHh
Confidence 99988888999999999998877653
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.20 E-value=1e-08 Score=98.62 Aligned_cols=301 Identities=13% Similarity=0.080 Sum_probs=164.5
Q ss_pred hHHHHHHHHHHHhcCc-CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhh-hhc-ccCCccc
Q 013204 77 KPSLDLAKELLEMFTA-SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLI-AAS-LSGLPAL 153 (447)
Q Consensus 77 ~~~~~l~~~l~~~~~~-~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~-~~~-~~~~~~~ 153 (447)
+...+..+.+.+++.. .+.+-++++.|||.++|+++..+. . .++.++++. + +.|.... .+. .-+...
T Consensus 39 ~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~------~-~~g~~vLv~-g-~FG~r~~~eia~~~g~~~- 108 (374)
T TIGR01365 39 EKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSML------G-CRGVDVLAW-E-SFGKGWVTDVTKQLKLPD- 108 (374)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcC------C-CCCCeEEEE-C-HHHHHHHHHHHHhcCCCC-
Confidence 4455667777777742 223335668899999999999763 1 123466664 3 4354322 221 111100
Q ss_pred cCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHH
Q 013204 154 HQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAV 233 (447)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l 233 (447)
+..+..+ |. +.. ++++++. ...+ .+...-.++|...| ++ ++
T Consensus 109 ----------v~~l~~~--~g-----~~~------~~~~ve~------~~~v---~~vhnETSTGv~np----v~---~i 149 (374)
T TIGR01365 109 ----------VRVLEAE--YG-----KLP------DLKKVDF------KNDV---VFTWNGTTSGVRVP----NG---DF 149 (374)
T ss_pred ----------cEEEcCC--CC-----CCC------CHHHcCC------CCCE---EEecCCCchheecc----cc---cc
Confidence 0011111 00 000 0244431 1223 34444445566665 33 44
Q ss_pred HHh-cCCEEEEehhhcCCCccccccccccCCCCCCeeeec--ccCCCcccceeEEEeChhHHHHhhhccCC---CC----
Q 013204 234 VKK-YDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMPIGAILVSPEVSEVIHSQSNT---LG---- 303 (447)
Q Consensus 234 ~~~-~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~~~---~~---- 303 (447)
+++ +++++|+|-|-+ +|- .++-.+ + .|++..| |+|++. .++|+++.+++.++........ +.
T Consensus 150 ~~~~~~~lliVDavSs-~g~--~~l~~d--~--iDv~~tgsQK~L~~p-pGls~v~vs~~Al~~~~~~~~y~~~~~~~~~ 221 (374)
T TIGR01365 150 IPADREGLTICDATSA-AFA--QDLDYH--K--LDVVTFSWQKVLGGE-GAHGMLILSPRAVARLESYTPAWPLPKIFRL 221 (374)
T ss_pred ccccCCCcEEEEccch-hcC--CCCChh--H--CcEEEEechhccCCC-CceEEEEECHHHHHHHhhcCCCCCChhhhcc
Confidence 443 589999998865 542 233232 2 6777654 999997 6889999999988776532110 00
Q ss_pred --------c-cCcCCCCCCcHHHHHHHHHHHHHHhhh-c---HHHHHHHHHHHHHHhHhhccCCCceee--EeeeeeEEE
Q 013204 304 --------S-FSHGFTYSGHPVSCAVAIEALKIYKER-N---IVEQVNKIAPKFQDGVKAFSDSPIIGE--IRGTGLILG 368 (447)
Q Consensus 304 --------~-~~~~~t~~~~~~~~~aa~a~l~~~~~~-~---~~~~~~~~~~~l~~~L~~l~~~~~~~~--~~~~g~~~~ 368 (447)
. ......++++..++.+++.+|+.++++ + ..++.+++.+.+++.++++........ .........
T Consensus 222 ~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~ 301 (374)
T TIGR01365 222 TKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVC 301 (374)
T ss_pred ccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEE
Confidence 0 011223344445666667777766553 3 456667778888888888731222221 111222334
Q ss_pred EEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-----CCEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 369 TEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-----GDNIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 369 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----g~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
+.+..+......-.....+...+.+.|.++|+.+.++ ++.+||...-.++++||+.+++.|+-+..
T Consensus 302 v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~G~~~~~~~~fRIg~~G~i~~~di~~l~~~l~~~~~ 372 (374)
T TIGR01365 302 LKVVDPAIDALDEDAQADFAKELISTLEKEGVAYDIGSYRDAPSGLRIWCGATVEKSDLECLCPWLDWAFA 372 (374)
T ss_pred EEeCCccccccccchhhHHHHHHHHHHHHCCEEEeccccccCCCceEEecCCcCCHHHHHHHHHHHHHHHh
Confidence 4443221000000000012356888999999988855 36799999889999999999999987654
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4e-08 Score=88.69 Aligned_cols=220 Identities=15% Similarity=0.112 Sum_probs=138.8
Q ss_pred HHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeee
Q 013204 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS 270 (447)
Q Consensus 191 ~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~ 270 (447)
.++++.+. +.+++|++..|+.-+|.... +.+|-++++++|++++.|=+|+ .|- ...+...-..|+.+
T Consensus 157 ~~~~~~~~----dd~AvV~L~~V~y~TGql~d----m~aiT~~AH~~galv~wDLAHs-aGa----vp~~Lh~~gaDfai 223 (407)
T COG3844 157 RALEEAIT----DDVAVVLLSHVNYKTGQLLD----MRAITALAHQHGALVGWDLAHS-AGA----VPVDLHAAGADFAI 223 (407)
T ss_pred HHHHHhhc----cceEEEEeccccccccceee----HHHHHHHHHhcCceEEeehhcc-cCC----cceeecccCCCeee
Confidence 45666664 78999999999999998877 9999999999999999999988 322 22444444567765
Q ss_pred ec--ccCCCcccceeEEEeChhHHHHhhhccC----CCCccCcCC---------CC---CCcHHHHHHHHHHHHHHhhh-
Q 013204 271 FA--KALSSAYMPIGAILVSPEVSEVIHSQSN----TLGSFSHGF---------TY---SGHPVSCAVAIEALKIYKER- 331 (447)
Q Consensus 271 ~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~---------t~---~~~~~~~~aa~a~l~~~~~~- 331 (447)
-+ |-+.||--..+++...++..+.....-. +.++|.... -| +.+.+++++...+|++..+-
T Consensus 224 gcsyKYLNgGPGapa~l~v~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~ 303 (407)
T COG3844 224 GCSYKYLNGGPGAPAGLFVAPRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVD 303 (407)
T ss_pred eeeceeccCCCCCceeEEeccccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcC
Confidence 33 6666542234455555444333221100 011111111 11 12345666666778876553
Q ss_pred --cHHHHHHHHHHHHHHhHhhc-cCCCce--e--eEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEe
Q 013204 332 --NIVEQVNKIAPKFQDGVKAF-SDSPII--G--EIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV 404 (447)
Q Consensus 332 --~~~~~~~~~~~~l~~~L~~l-~~~~~~--~--~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~ 404 (447)
+++++.-.+++++.+.++.. ..+++. + .-...|..+.+..+. ...+.+.|.++||+.--
T Consensus 304 i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp~--------------~~~V~qaLi~rGVigD~ 369 (407)
T COG3844 304 ITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHPH--------------GYQVMQALIDRGVIGDF 369 (407)
T ss_pred HHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecCc--------------HHHHHHHHHHcCccccc
Confidence 34555566777777777765 323321 1 112234444444332 45678999999998653
Q ss_pred e-CCEEEEecC-CCCCHHHHHHHHHHHHHHHHHHH
Q 013204 405 S-GDNIMMSPP-FIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 405 ~-g~~iR~~~~-~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
. .+.+||.|. ++.+-+|+=.+++.|++++++..
T Consensus 370 R~P~vlRfgftPlY~~~~DVw~AV~~L~evL~t~a 404 (407)
T COG3844 370 REPDVLRFGFTPLYVSFVDVWDAVDALEEVLDTLA 404 (407)
T ss_pred cCCCeeeecCccceechhHHHHHHHHHHHHHHhhc
Confidence 3 367999874 88999999999999999998753
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.1e-10 Score=105.47 Aligned_cols=197 Identities=17% Similarity=0.130 Sum_probs=119.6
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcce
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 129 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~ 129 (447)
.+|++.+++.+.. .+.-. .+..+...++++++++++ +.+.++|++||+.||..+++.... +...
T Consensus 7 ~~~~m~~a~~~a~-~gd~~----Yg~D~~~~~l~~~i~~l~---g~e~a~f~~sGT~An~~al~~~~~--------~~~~ 70 (290)
T PF01212_consen 7 PTPAMLEAMAAAN-VGDDA----YGEDPTTARLEERIAELF---GKEAALFVPSGTMANQLALRAHLR--------PGES 70 (290)
T ss_dssp S-HHEEHHHHHTT-SB-CC----TTSSHHHHHHHHHHHHHH---TSSEEEEESSHHHHHHHHHHHHHH--------TTEE
T ss_pred CCHHHHHHHHccc-cCCcc----cCCChhHHHHHHHHHHHc---CCCEEEEeCCCChHHHHHHHHHHh--------cCCc
Confidence 5899999995443 22211 346778889999999998 667889999999999999997752 2355
Q ss_pred EEEEcCCCccc--hhhhh-cccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCC--Cc
Q 013204 130 FIARQKSYHGS--TLIAA-SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGP--ET 204 (447)
Q Consensus 130 vi~~~~~yhg~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~--~~ 204 (447)
||+-+ ..|.. ..++. ..+|.... .++..+. +..++++|++.+..... .+
T Consensus 71 vi~~~-~aHi~~~E~ga~~~~~G~~~~------------~l~~~~~-------------G~l~~~~l~~~~~~~~~h~~~ 124 (290)
T PF01212_consen 71 VICAD-TAHIHFDETGAIEELSGAKLI------------PLPSDDD-------------GKLTPEDLEAAIEEHGAHHPQ 124 (290)
T ss_dssp EEEET-TEHHHHSSTTHHHHHTTCEEE------------EEBECTG-------------TBB-HHHHHHHHHHHTGTSGG
T ss_pred eeccc-cceeeeeccchhhHhcCcEEE------------ECCCccc-------------CCCCHHHHHHHhhhccccCCC
Confidence 66544 34443 22222 22333211 1111000 11124888888876432 57
Q ss_pred EEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-----ccccCCCCCCeeee--cccCCC
Q 013204 205 IAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-----GCDKYSIKPDLVSF--AKALSS 277 (447)
Q Consensus 205 ~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-----~~~~~~~~~d~v~~--sK~l~g 277 (447)
+++|.+|......|..+++.+.|++|.++|++||+.|++|-+ |...-. ....+.--.|++++ +|.++.
T Consensus 125 ~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGA-----Rl~~a~~~~~~~~~e~~~~~D~v~~~~tK~~g~ 199 (290)
T PF01212_consen 125 PAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGA-----RLANAAAALGVSLAEIAAGADSVSFGGTKNGGA 199 (290)
T ss_dssp EEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEET-----THHHHHCHHHHHHHHHHTTSSEEEEETTSTT-S
T ss_pred ccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehh-----hHHHhhhcccccHHHHhhhCCEEEEEEEccccc
Confidence 899999998888666888999999999999999999999944 321100 00111123687765 476553
Q ss_pred cccceeEEEeChhHHHHh
Q 013204 278 AYMPIGAILVSPEVSEVI 295 (447)
Q Consensus 278 g~~~~g~~~~~~~~~~~~ 295 (447)
..-+++++++++++..
T Consensus 200 --~~Gavl~~~~~~i~~~ 215 (290)
T PF01212_consen 200 --PGGAVLAGNKEFIAKA 215 (290)
T ss_dssp --SSEEEEEESHHHHHHH
T ss_pred --ccceEEEechHHHHHH
Confidence 2235666888865543
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.1e-08 Score=94.36 Aligned_cols=200 Identities=14% Similarity=0.085 Sum_probs=126.8
Q ss_pred cEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeee--cccCCCcccc
Q 013204 204 TIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF--AKALSSAYMP 281 (447)
Q Consensus 204 ~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~--sK~l~gg~~~ 281 (447)
....|.+.......|...+ ++.+.+++++|+|-+-+ ++ +.++-++.+ |++.. .|+|+ + .+
T Consensus 143 d~~~v~~t~NETstGv~~~---------~~~~~~~~llvvD~sS~-~~--s~pid~~~~----dvi~agsQKnlg-P-~G 204 (364)
T PRK12462 143 RAPFRHYVSNETVEGLQFP---------DAAGLPDSPLIADMSSD-FM--SRPFDVEAY----GMVYAHAQKNLG-P-AG 204 (364)
T ss_pred CCcEEEEccCCCCceEecC---------cccccCCCeEEEEcCch-hh--CCCCChHHc----cEEEeeccccCC-C-Cc
Confidence 3556777777777776654 23334689999997755 42 233434443 77755 49997 5 68
Q ss_pred eeEEEeChhHHHHhhhccCCCCccC-------cCCCC-CCcHHHHHHHHHHHHHHhhh--c---HHHHHHHHHHHHHHhH
Q 013204 282 IGAILVSPEVSEVIHSQSNTLGSFS-------HGFTY-SGHPVSCAVAIEALKIYKER--N---IVEQVNKIAPKFQDGV 348 (447)
Q Consensus 282 ~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~t~-~~~~~~~~aa~a~l~~~~~~--~---~~~~~~~~~~~l~~~L 348 (447)
+++++.+++.++...... + .+. ..+++ +++...+-+...+++.+.++ + ..++.+++.+.+++.+
T Consensus 205 ltvvivs~~al~~~~~~~--p-~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~i 281 (364)
T PRK12462 205 VTVAIIRRALLERVPDTL--P-PMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATL 281 (364)
T ss_pred eEEEEECHHHHhhccccC--C-chhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999887664321 1 111 22344 44455677777888888766 4 4456666777788888
Q ss_pred hhcc-CCCceeeEeeeeeEE-EEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC---CEEEEecCCCCCHHHHH
Q 013204 349 KAFS-DSPIIGEIRGTGLIL-GTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG---DNIMMSPPFIMSPEEVD 423 (447)
Q Consensus 349 ~~l~-~~~~~~~~~~~g~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g---~~iR~~~~~~~t~e~i~ 423 (447)
+++. -+..+.....++.+. .+.+.++. +...|.+.+.++|++..-+. +.+|.+.--.++.|.++
T Consensus 282 d~~~~~~~~~~~~~~RS~mnv~f~~~~~~-----------l~~~f~~~a~~~gl~~lkGhr~vgg~Ras~yna~~~e~v~ 350 (364)
T PRK12462 282 DALNEVIDCHAHRAARSTMNVAFRFRQPR-----------LDTLFKEQSTEAGFCGLSGHRSIGGIRASLYNAVSEQAVS 350 (364)
T ss_pred HhCCCcccCCCChhhcCcceEEEEcCCHH-----------HHHHHHHHHHHCCCccccCCcccCceEEEcCCCCCHHHHH
Confidence 7764 223222222233332 23333221 45678899999999875443 45999988888999999
Q ss_pred HHHHHHHHHHHH
Q 013204 424 ELISKYGKALKA 435 (447)
Q Consensus 424 ~~~~~l~~~l~~ 435 (447)
.+++-+++.-++
T Consensus 351 ~L~~fm~~f~~~ 362 (364)
T PRK12462 351 RLCAFLKDFAIR 362 (364)
T ss_pred HHHHHHHHHHHh
Confidence 888888776543
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.5e-08 Score=104.97 Aligned_cols=312 Identities=12% Similarity=0.136 Sum_probs=165.5
Q ss_pred CCHHHHHHHHHHHhcCCccccc----CcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCC
Q 013204 50 SEPRLVAAATAQLNTLPFYHSF----WNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRP 125 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~ 125 (447)
-++.|.+++.+..+-+..++++ ..+.-+...++...++++. +-+.+++.+..++|.+.++++...+ . .. .
T Consensus 117 ~P~~v~~~i~~~~~~~TaytPYqaEisQG~lqal~~~Qt~ia~Lt-G~~~anaSL~d~aTAaaea~~~a~~-~--~~--g 190 (993)
T PLN02414 117 VPPVILRNILENPGWYTQYTPYQAEIAQGRLESLLNYQTMITDLT-GLPMSNASLLDEGTAAAEAMAMCNN-I--LK--G 190 (993)
T ss_pred CCHHHHHHHHhChHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHh-CCChhhEeecCChHHHHHHHHHHHh-c--cc--C
Confidence 4455557777655422112111 1122233456667777775 3566789999999999997765442 1 11 1
Q ss_pred CcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcE
Q 013204 126 NKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETI 205 (447)
Q Consensus 126 ~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~ 205 (447)
++++|++.+..| +.+...+... ....++ .+..++. ++.. . ..+.+
T Consensus 191 ~~~~VlVs~~~h-P~~~~v~~t~-----a~~~Gi---eV~~v~~---------------------~~~~----~-~~~~v 235 (993)
T PLN02414 191 KKKKFLIASNCH-PQTIDVCQTR-----ADGLGL---EVVVADE---------------------KDFD----Y-SSGDV 235 (993)
T ss_pred CCCEEEEcCccC-HhHHHHHHHh-----hhhcCC---EEEEecc---------------------hhhc----c-ccCce
Confidence 245676655555 4433332111 001111 1111221 1100 0 12346
Q ss_pred EEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEE--ehhhcCCCccccccccccCCCCCCeeeec--c---cCCCc
Q 013204 206 AAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIA--DEVICAFGRLGTMFGCDKYSIKPDLVSFA--K---ALSSA 278 (447)
Q Consensus 206 a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~--DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K---~l~gg 278 (447)
+++++. ..+..|.+.+ +++|.++|+++|+++++ |-+.. .+-. .--.+-.|+++.+ | .++.|
T Consensus 236 ~~vlvq-~P~~~G~v~d----v~~I~~~ah~~GaL~iVaad~lal----~~l~---~pge~GADi~vgsgqKwg~P~G~G 303 (993)
T PLN02414 236 CGVLVQ-YPATDGEVLD----YAEFVKNAHANGVKVVMATDLLAL----TMLK---PPGEWGADIVVGSAQRFGVPMGYG 303 (993)
T ss_pred EEEEEe-cCCCCeEEcC----HHHHHHHHHHcCCEEEEEECHHHh----cCCC---CHhhccCcEEEECCCccccCCCCC
Confidence 566532 3334567766 99999999999999999 53322 1100 1112346888653 3 23323
Q ss_pred ccceeEEEeChhHHHHhhhc--c---CCCC--cc-------C-cC--CCCCCcH---HHHHHHHHHHH--HHhh---hcH
Q 013204 279 YMPIGAILVSPEVSEVIHSQ--S---NTLG--SF-------S-HG--FTYSGHP---VSCAVAIEALK--IYKE---RNI 333 (447)
Q Consensus 279 ~~~~g~~~~~~~~~~~~~~~--~---~~~~--~~-------~-~~--~t~~~~~---~~~~aa~a~l~--~~~~---~~~ 333 (447)
+...|++++++++.+.+-.. + ...+ .+ . |. -..+.|. .++.+++++.. .+.. +++
T Consensus 304 GP~aGflavr~~~~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~I 383 (993)
T PLN02414 304 GPHAAFLATSQEYKRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 383 (993)
T ss_pred CCCeeEEEECHHHHhhCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHH
Confidence 35689999999876643210 0 0000 00 0 00 0112233 23333333221 2112 334
Q ss_pred HHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-CCEEEEe
Q 013204 334 VEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-GDNIMMS 412 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-g~~iR~~ 412 (447)
.+++..+..++++.|+++ +..+... .....+.+.+. . ...+.++|.++||.++.. ++.+|+|
T Consensus 384 a~ri~~la~~l~~~L~~~-G~~~~~~--~~f~~vt~~~~--~------------~~~v~~~L~~~gI~l~~~~~~~lrvs 446 (993)
T PLN02414 384 AQRVHGLAGVFAAGLKKL-GFQVQSL--PFFDTVKVKCS--D------------ADAIADAAAKVGINLRVVDANTVTVS 446 (993)
T ss_pred HHHHHHHHHHHHHHHhhc-CCccCCC--CCcCeEEEecC--C------------HHHHHHHHHHCCCeeEEecCCeEEEE
Confidence 577888888888888765 2322211 11112223322 1 245889999999988866 4679999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 013204 413 PPFIMSPEEVDELISKYGK 431 (447)
Q Consensus 413 ~~~~~t~e~i~~~~~~l~~ 431 (447)
++..+|++|||+++++|..
T Consensus 447 ~~e~~T~edId~L~~~l~~ 465 (993)
T PLN02414 447 FDETTTLEDVDKLFKVFAG 465 (993)
T ss_pred eeccCCHHHHHHHHHHHcc
Confidence 9999999999999999963
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-08 Score=97.45 Aligned_cols=206 Identities=19% Similarity=0.203 Sum_probs=114.2
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-CCCccccccccccCCCCCCe
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-AFGRLGTMFGCDKYSIKPDL 268 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-g~g~~g~~~~~~~~~~~~d~ 268 (447)
.+.++++.....| ++||+..+.-. .. --+++++++|++.|++|++|-.|. |+--.| .+ -+-+. ..|+
T Consensus 158 ~d~l~~~a~~~kP---klIi~G~S~y~---~~---~d~~~~reIad~vga~l~~D~sH~~GLIa~g-~~-~~P~~-~ADv 225 (399)
T PF00464_consen 158 YDELEKLAKEHKP---KLIICGASSYP---RP---IDFKRFREIADEVGAYLMADISHIAGLIAGG-LF-PNPFP-YADV 225 (399)
T ss_dssp HHHHHHHHHHH-----SEEEEE-SSTS---S------HHHHHHHHHHTT-EEEEE-TTTHHHHHTT-SS---GCC-TSSE
T ss_pred HHHHHHHHhhcCC---CEEEECchhcc---Cc---cCHHHHHHHHHhcCcEEEecccccccceehh-ee-cCccc-cceE
Confidence 4888888877555 57777665321 12 227999999999999999999886 331111 11 11222 2799
Q ss_pred eeec--ccCCCcccceeEEEeC--------------hhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh--
Q 013204 269 VSFA--KALSSAYMPIGAILVS--------------PEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE-- 330 (447)
Q Consensus 269 v~~s--K~l~gg~~~~g~~~~~--------------~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-- 330 (447)
++.| |.|.| .+-|.++.+ +++.+.+... ...+..-+.+.-.+++-..+++...+
T Consensus 226 vt~sThKtl~G--PrggiI~~~~~~~~~~~~~~~~~~~l~~~I~~a------vfP~~qg~~h~~~iaalAval~ea~~~~ 297 (399)
T PF00464_consen 226 VTGSTHKTLRG--PRGGIILTNKGSKNVDKKGKEIDEELAEKIDSA------VFPGLQGGPHMHRIAALAVALKEALSPE 297 (399)
T ss_dssp EEEESSGGG-S--SS-EEEEES-SEEEE-TTS-EEEHHHHHHHHHH------HTTTT-SS--HHHHHHHHHHHHHHTSHH
T ss_pred EEeeccccccc--cCceEEEEcCCccccCCcccccHHHHHHHhccc------cCCCcccCcchhHHHHHHHHHhcccCHH
Confidence 9876 89998 577888888 7788887642 12221112222233333344554433
Q ss_pred -hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee----
Q 013204 331 -RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS---- 405 (447)
Q Consensus 331 -~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---- 405 (447)
.+...++.++.+.|.+.|++. ++.++..- ....++.+++..... .+....+.|.+.||.+-..
T Consensus 298 fk~Ya~qVv~NAk~La~~L~~~-G~~v~~gg-Td~H~vlvd~~~~~~----------~g~~a~~~Le~~gI~vnkn~iP~ 365 (399)
T PF00464_consen 298 FKEYAKQVVKNAKALAEALQER-GFKVVTGG-TDNHQVLVDLRSFGI----------DGKEAEKALEEAGIIVNKNTIPG 365 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-T-EEGGGS--SSSEEEEEGGGGTS-----------HHHHHHHHHHTTEE-EEE--TT
T ss_pred HHHHHHHHHHHHHHHHHHHhhC-CcEEEECC-CCCCeEEEEeccccc----------chHHHHHHHHhcCeeecccccCC
Confidence 345677777888888888775 33333211 123345566654221 1445677888999998632
Q ss_pred ------CCEEEEecC----CCCCHHHHHHHHH
Q 013204 406 ------GDNIMMSPP----FIMSPEEVDELIS 427 (447)
Q Consensus 406 ------g~~iR~~~~----~~~t~e~i~~~~~ 427 (447)
.+.||+..+ ....++|+.++.+
T Consensus 366 d~~~~~~sGlRlGT~~lT~rG~~e~dm~~iA~ 397 (399)
T PF00464_consen 366 DRSPFVPSGLRLGTPALTRRGMKEEDMKEIAE 397 (399)
T ss_dssp TSTTTT-SEEEEESHHHHHTT--HHHHHHHHH
T ss_pred CCCCCCCCEEEECCHHHHhCCCCHHHHHHHHh
Confidence 157999965 2345666665544
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.2e-08 Score=92.74 Aligned_cols=192 Identities=17% Similarity=0.234 Sum_probs=119.7
Q ss_pred ChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccC
Q 013204 76 TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQ 155 (447)
Q Consensus 76 ~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 155 (447)
.+....+++.+.++. +...++.++||..|...|+.... +...+++.++..|.|......... .
T Consensus 76 nPt~~~le~~iaal~---ga~~~l~fsSGmaA~~~al~~L~--------~~g~~iV~~~~~Y~gT~~~l~~~~------~ 138 (409)
T KOG0053|consen 76 NPTRDVLESGIAALE---GAAHALLFSSGMAAITVALLHLL--------PAGDHIVATGDVYGGTLRILRKFL------P 138 (409)
T ss_pred CCchHHHHHHHHHHh---CCceEEEecccHHHHHHHHHHhc--------CCCCcEEEeCCCcccHHHHHHHHH------H
Confidence 344556777777774 45569999999999999999765 556889999999988742221111 0
Q ss_pred CCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHH
Q 013204 156 KFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVK 235 (447)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~ 235 (447)
.++... .+++ .++++++.....+ ++.+|.+|..-+....++. +++|+++|+
T Consensus 139 ~~gie~---~~vd---------------------~~~~~~~~~~i~~-~t~~V~~ESPsNPll~v~D----I~~l~~la~ 189 (409)
T KOG0053|consen 139 KFGGEG---DFVD---------------------VDDLKKILKAIKE-NTKAVFLESPSNPLLKVPD----IEKLARLAH 189 (409)
T ss_pred HhCcee---eeec---------------------hhhHHHHHHhhcc-CceEEEEECCCCCcccccc----HHHHHHHHh
Confidence 111111 1111 1444444433333 6788888887555544444 999999999
Q ss_pred hcCCEEEEehhhcCCCccccccccccCCCCCCeeee--cccCCCcc-cceeEEEeC-hhHHHHhhhccCCCCccCcCCCC
Q 013204 236 KYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF--AKALSSAY-MPIGAILVS-PEVSEVIHSQSNTLGSFSHGFTY 311 (447)
Q Consensus 236 ~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~--sK~l~gg~-~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~t~ 311 (447)
++|+++++|++..+. ..++-+..-+|+|+- .|-++|.. .-.|.++.+ +++...+... ...--+
T Consensus 190 ~~g~~vvVDnTf~~p------~~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~-------~~~lg~ 256 (409)
T KOG0053|consen 190 KYGFLVVVDNTFGSP------YNQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFL-------QEDLGW 256 (409)
T ss_pred hCCCEEEEeCCcCcc------cccChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHH-------HHHhcC
Confidence 999999999987643 123333445899975 58888732 223455664 7777766532 122345
Q ss_pred CCcHHHHHHHHHHHH
Q 013204 312 SGHPVSCAVAIEALK 326 (447)
Q Consensus 312 ~~~~~~~~aa~a~l~ 326 (447)
..+|+.+.-....++
T Consensus 257 ~~~p~~~~ll~Rglk 271 (409)
T KOG0053|consen 257 CEDPFDLFLLSRGLK 271 (409)
T ss_pred CCCHHHHHHHhcCcc
Confidence 667777665544443
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-07 Score=87.69 Aligned_cols=308 Identities=14% Similarity=0.125 Sum_probs=159.8
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHH-HHHHHHHHHHhcC-----CCCcceEEEEcCCCccchhhhhccc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDT-QVKLVWYYNNALG-----RPNKKKFIARQKSYHGSTLIAASLS 148 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~-Al~~~~~~~~~~~-----~~~~~~vi~~~~~yhg~~~~~~~~~ 148 (447)
..+.+.|..+.+++++ ..+.++++...+.|..++. +|..+..+....+ +.++-++|+..|+|-.+....-..+
T Consensus 67 ~l~Gipe~r~l~a~ll-gv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHFai~E~~G 145 (425)
T PF12897_consen 67 GLDGIPEARELFAELL-GVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHFAITEHFG 145 (425)
T ss_dssp -SS--HHHHHHHHHHH-TS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHHHHHHHCT
T ss_pred ccCChHHHHHHHHHHh-CCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHHHHHHhhC
Confidence 4456778888888886 4677788777666655543 3333333222111 1235789999999966643222111
Q ss_pred CCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHH
Q 013204 149 GLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFE 228 (447)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~ 228 (447)
. .-+++|..-. + + +++.+|+++.+ ...+++|.+=|.+++-..+.++++..+
T Consensus 146 -i--------------emi~VpM~~d----G---P-----DmD~Ve~LV~~--D~svKGiWcVP~ySNPtG~tySde~vr 196 (425)
T PF12897_consen 146 -I--------------EMIPVPMTED----G---P-----DMDMVEELVAE--DPSVKGIWCVPKYSNPTGITYSDEVVR 196 (425)
T ss_dssp ----------------EEEEEEEETT----E---E------HHHHHHHTHT--STTEEEEEE-SSS-TTT-----HHHHH
T ss_pred -c--------------EEEecCCCCC----C---C-----CHHHHHHHHhc--CCccceEEeCCCccCCCCccCCHHHHH
Confidence 0 0111111000 0 0 14888888764 357999999998655434788999999
Q ss_pred HHHHH-HHhcCCEEEEehhhcCCCcc-cc--ccc-cccC-----CCCCCee----eecc-cCCCcccceeEEEeChhHHH
Q 013204 229 KVQAV-VKKYDILFIADEVICAFGRL-GT--MFG-CDKY-----SIKPDLV----SFAK-ALSSAYMPIGAILVSPEVSE 293 (447)
Q Consensus 229 ~l~~l-~~~~g~~li~DEv~~g~g~~-g~--~~~-~~~~-----~~~~d~v----~~sK-~l~gg~~~~g~~~~~~~~~~ 293 (447)
+++.+ +...+..++-|.+|+ +--. +. .-. .+.+ .-.||.+ +.|| .+.| .+++++..+++-++
T Consensus 197 rlA~m~~AA~DFRI~WDNAY~-vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~G--aGva~~aaS~~Nl~ 273 (425)
T PF12897_consen 197 RLAAMKTAAPDFRIFWDNAYA-VHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKITFPG--AGVAFFAASEANLA 273 (425)
T ss_dssp HHHHS--SSTT-EEEEE-TTT-T-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS-TT--SS-EEEEE-HHHHH
T ss_pred HHhcCCcCCcCeEEEeecCce-EeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccccCC--cceeeeecCHHHHH
Confidence 99998 446799999999986 2111 10 000 0000 1146644 4578 5655 58999999998777
Q ss_pred HhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHhH----h----hcc-CCCceeeEeee
Q 013204 294 VIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER-NIVEQVNKIAPKFQDGV----K----AFS-DSPIIGEIRGT 363 (447)
Q Consensus 294 ~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~-~~~~~~~~~~~~l~~~L----~----~l~-~~~~~~~~~~~ 363 (447)
.+... ....+.+.+-+.+..-..-++- .+ ++.+++++..+.++-+. + +|. ..++..+.++.
T Consensus 274 ~~~~~-------~~~~tIgpdKvNQLRHvrff~d--~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~ 344 (425)
T PF12897_consen 274 WIKKH-------LSVQTIGPDKVNQLRHVRFFKD--AEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPK 344 (425)
T ss_dssp HHHHH-------HHHH-S---HHHHHHHHHHHHS--HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---S
T ss_pred HHHHH-------hcCceeCccHHHHHHHHHHhcC--hhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCC
Confidence 77642 2233556666666544433332 23 56666666555544322 2 233 34567777777
Q ss_pred eeE-EEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-----------CEEEEecCCCCCHHHHHHHHHHHHH
Q 013204 364 GLI-LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-----------DNIMMSPPFIMSPEEVDELISKYGK 431 (447)
Q Consensus 364 g~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-----------~~iR~~~~~~~t~e~i~~~~~~l~~ 431 (447)
|.+ +.++..+. .+..+.+.+.+.||..++.| +.||+.|+ .-+.||++.+++.+.-
T Consensus 345 GGYFIsld~~~G------------~AkrvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS-~P~leel~~Am~~~~~ 411 (425)
T PF12897_consen 345 GGYFISLDVLDG------------TAKRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPS-YPSLEELETAMDVFAT 411 (425)
T ss_dssp BSS-EEEEESTT-------------HHHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--S-SS-HHHHHHHHHHHHH
T ss_pred CceEEEEecCCC------------hHHHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCC-CCCHHHHHHHHHHHHH
Confidence 764 45555443 26778999999999999754 46999998 5899999999999988
Q ss_pred HHHHHH
Q 013204 432 ALKATE 437 (447)
Q Consensus 432 ~l~~~~ 437 (447)
+++...
T Consensus 412 cv~la~ 417 (425)
T PF12897_consen 412 CVKLAA 417 (425)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.1e-08 Score=88.98 Aligned_cols=330 Identities=16% Similarity=0.128 Sum_probs=179.8
Q ss_pred CHHHHHHHHHHHhcCCc---ccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCC
Q 013204 51 EPRLVAAATAQLNTLPF---YHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPN 126 (447)
Q Consensus 51 ~p~v~~a~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~ 126 (447)
+..+++.....+..++. .++...+..-.....++.+.+.=. +.+++.++++.|.|.|+...++++.. ..
T Consensus 88 p~Dai~RA~~~L~~~gGs~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~-------~~ 160 (475)
T KOG0258|consen 88 PTDAIKRAKRILNDCGGSLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIA-------GK 160 (475)
T ss_pred CHHHHHHHHHHHHhcCCcccccccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhc-------CC
Confidence 34555555555554332 122233444455566666665532 35778999999999999999997742 24
Q ss_pred cceEEEEcCCCccchhhhhcccCC--ccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhC-C-
Q 013204 127 KKKFIARQKSYHGSTLIAASLSGL--PALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEG-P- 202 (447)
Q Consensus 127 ~~~vi~~~~~yhg~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~-~- 202 (447)
+..|++.-|-|.-++.-....++. +-|. +-...|. .+.++|++.+.... .
T Consensus 161 ~~GvliPiPQYPLYsAti~l~~~~~v~YyL-------------dEe~~W~-------------ld~~el~~~~~eA~k~i 214 (475)
T KOG0258|consen 161 KTGVLIPIPQYPLYSATISLLGGTQVPYYL-------------DEESNWS-------------LDVAELERSVDEARKGI 214 (475)
T ss_pred CCceEeecCCCchhHHHHHHhCCcccceee-------------ccccCCC-------------CCHHHHHHHHHHHhccC
Confidence 678999999997765333222222 1111 0000010 01366777665432 1
Q ss_pred CcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc-ccc-ccccc----cCC-CCCC---ee---
Q 013204 203 ETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR-LGT-MFGCD----KYS-IKPD---LV--- 269 (447)
Q Consensus 203 ~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~-~g~-~~~~~----~~~-~~~d---~v--- 269 (447)
+..++|+++|.|++| .+.+.+-+++|..+|.++++.|+.||||..--. .+. .+.+. ..+ ..+| ++
T Consensus 215 ~~r~lvvINPGNPTG--qvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~Sfh 292 (475)
T KOG0258|consen 215 NPRALVVINPGNPTG--QVLSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFH 292 (475)
T ss_pred CceEEEEECCCCccc--hhhcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeee
Confidence 346789999999998 456889999999999999999999999874322 332 22221 122 1243 22
Q ss_pred eecccCCC-cccceeEEE---eChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHH----------HHH--HHHHhhhcH
Q 013204 270 SFAKALSS-AYMPIGAIL---VSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVA----------IEA--LKIYKERNI 333 (447)
Q Consensus 270 ~~sK~l~g-g~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa----------~a~--l~~~~~~~~ 333 (447)
..||++.| .+.+-|++= ..+++.+.+.+... ....++..+.+.. -.. +..-+++..
T Consensus 293 SvSKGy~gECG~RGGYmEv~n~~prv~~qi~Kl~s--------i~lc~~V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~i 364 (475)
T KOG0258|consen 293 SVSKGYMGECGQRGGYMESLNRDPRVKQQIKKLAS--------IKLCPQVSGQKLVDLVVNPPKPGDPSYDLFSSEKDGI 364 (475)
T ss_pred cccccceeeecccCCeeecccCChhHHHHHHHHHh--------hhhcCCccchhhhceecCCCCCCCcchhhhhhhhHhH
Confidence 35787654 114556542 24555444432100 0001111111100 001 111124556
Q ss_pred HHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEE---eecCC----CCCCCCCCCcchHHHHH-HHHHHcCceEEee
Q 013204 334 VEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTE---FADNK----SPNEPFPPEWGIGAYFG-AQCEKHGMLVRVS 405 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~---~~~~~----~~~~~~~~~~~~~~~~~-~~l~~~Gi~~~~~ 405 (447)
.+.++.+.+.+.+.++.+ +.+.+.+.+|.|..+- ++... ......+ ....+ +.|..-||.+.|+
T Consensus 365 l~~l~~ra~l~~~~~ns~---~gi~cn~~qGAMY~fP~i~lP~kaie~A~~~~~~P-----D~FYc~~LLe~tGIcvVPG 436 (475)
T KOG0258|consen 365 LSSLRSRAKLTEDAFNSL---EGISCNPVQGAMYLFPQISLPPKAIEAAKALGIAP-----DEFYCLKLLEATGICVVPG 436 (475)
T ss_pred HHHHHHHhHHHHHHHhhc---CceeeccCccceeecccccCCHHHHHHHHHhCCCC-----cHHHHHHHHHhcCeEEecC
Confidence 777777888888888777 4566667788876542 22100 0000000 11233 4455679999886
Q ss_pred C-------C-EEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 406 G-------D-NIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 406 g-------~-~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
. . .+|.+ ..... + +.++++++.=+++
T Consensus 437 SGFGQ~~GtyH~R~T---iLp~~-~-~~i~~~~~fH~~f 470 (475)
T KOG0258|consen 437 SGFGQKEGTYHFRTT---ILPPG-L-EIIEKFKKFHAEF 470 (475)
T ss_pred CCCCCCCceeEEEEe---ecCch-h-HHHHHHHHHHHHH
Confidence 2 2 38888 33333 4 6666666655444
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.2e-09 Score=95.61 Aligned_cols=196 Identities=16% Similarity=0.155 Sum_probs=120.4
Q ss_pred ccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCC
Q 013204 45 TALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGR 124 (447)
Q Consensus 45 ~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~ 124 (447)
+++.+.+++=.+++- .++..+..|+.. ..+-...+++++..+= .+. -.+.+.||..|...|+..+.
T Consensus 33 Tsy~F~d~~haa~lF-~l~~~G~iYsRi--~NPT~~vlE~RiAaLE--GG~-aa~a~aSG~AA~~~ai~~la-------- 98 (426)
T COG2873 33 TSYVFDDTDHAAALF-GLKEPGNIYTRI--MNPTTDVLEERIAALE--GGV-AALAVASGQAAITYAILNLA-------- 98 (426)
T ss_pred eeeecCCHHHHHHHh-CCCcCCceeeec--cCchHHHHHHHHHHhh--cch-hhhhhccchHHHHHHHHHhc--------
Confidence 445555554333322 223323333322 2334556888888773 233 35667889999999888553
Q ss_pred CCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCc
Q 013204 125 PNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPET 204 (447)
Q Consensus 125 ~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~ 204 (447)
...++|+.-..-|=|+...... + .+.+++. +..++-.+ ++++++.+. ++
T Consensus 99 ~aGD~iVss~~LYGGT~~lf~~-t-----l~~~Gi~---v~fvd~~d------------------~~~~~~aI~----~n 147 (426)
T COG2873 99 GAGDNIVSSSKLYGGTYNLFSH-T-----LKRLGIE---VRFVDPDD------------------PENFEAAID----EN 147 (426)
T ss_pred cCCCeeEeeccccCchHHHHHH-H-----HHhcCcE---EEEeCCCC------------------HHHHHHHhC----cc
Confidence 2357788877777665321110 0 1112211 12222211 277777775 57
Q ss_pred EEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCcccce
Q 013204 205 IAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSAYMPI 282 (447)
Q Consensus 205 ~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg~~~~ 282 (447)
+++|.+|.+-+.++.++. ++.|.++|+++|++||+|.+.+. ++.++-...-.|+|+ .+|-++|-+-.+
T Consensus 148 Tkavf~EtigNP~~~v~D----ie~ia~iAh~~gvpliVDNT~at------pyl~rP~~hGADIVvHS~TK~igGhGt~i 217 (426)
T COG2873 148 TKAVFAETIGNPGLDVLD----IEAIAEIAHRHGVPLIVDNTFAT------PYLCRPIEHGADIVVHSATKYIGGHGTAI 217 (426)
T ss_pred cceEEEEeccCCCccccC----HHHHHHHHHHcCCcEEEecCCCc------ceecchhhcCCCEEEEeecccccCCcccc
Confidence 889999999888887776 99999999999999999987652 233444444578885 679999855778
Q ss_pred eEEEeChhHHHHh
Q 013204 283 GAILVSPEVSEVI 295 (447)
Q Consensus 283 g~~~~~~~~~~~~ 295 (447)
|.++....-.++-
T Consensus 218 GG~iVD~G~FDw~ 230 (426)
T COG2873 218 GGVIVDGGKFDWT 230 (426)
T ss_pred ceEEEeCCccccc
Confidence 8777655444433
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.7e-08 Score=92.80 Aligned_cols=234 Identities=17% Similarity=0.186 Sum_probs=128.2
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeC-ChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCC-cc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTN-SGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGL-PA 152 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~-sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~-~~ 152 (447)
+.....+-++..++.| +.++.+|.. |.|.+|.+++..+. .+++ .|.++.+.|-+...++..+|. |.
T Consensus 64 p~G~I~eAe~~aA~~f---GAd~t~flvnGsT~g~~a~i~a~~--------~~gd-~VLv~RN~HkSv~~alil~ga~Pv 131 (417)
T PF01276_consen 64 PEGIIKEAEELAARAF---GADKTFFLVNGSTSGNQAMIMALC--------RPGD-KVLVDRNCHKSVYNALILSGAIPV 131 (417)
T ss_dssp TBTHHHHHHHHHHHHH---TESEEEEESSHHHHHHHHHHHHHT--------TTTC-EEEEETT--HHHHHHHHHHTEEEE
T ss_pred CccHHHHHHHHHHHhc---CCCeEEEEecCchHHHHHHHHHhc--------CCCC-EEEEcCCcHHHHHHHHHHcCCeEE
Confidence 5567777778888887 555667665 55566677766653 2234 455678999998888887774 44
Q ss_pred ccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEE---EEEEccccCCCCCccCChhHHHH
Q 013204 153 LHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIA---AFIAEPVIGAGGVIPPPATYFEK 229 (447)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a---~vi~epv~~~~G~~~~~~~~l~~ 229 (447)
|..+-+........++. +.+. .+.+++.+.+.. +..+ ++|+.|.+ .|.... +++
T Consensus 132 yi~p~~~~~gi~~~i~~-------------~~~~---~~~i~~~l~~~p-~~k~~~~vvlt~PTY--~Gv~~d----i~~ 188 (417)
T PF01276_consen 132 YIPPEDNEYGIIGGISP-------------DEFN---EEDIEEALKEHP-DAKAPRLVVLTSPTY--YGVCYD----IKE 188 (417)
T ss_dssp EEEEEE-TTS-BEEB-G-------------GGGS---HHHHHHHHHHCT-TCHCESEEEEESS-T--TSEEE-----HHH
T ss_pred EecCCccccCCccCCCh-------------hhhh---HHHHHHHHHhCc-cccCceEEEEeCCCC--CeEEEC----HHH
Confidence 43322111111111111 1111 267788887643 3333 66666654 244444 999
Q ss_pred HHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCC-------eeeec--ccCCCcccceeEEEeChh--H-HHHhhh
Q 013204 230 VQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPD-------LVSFA--KALSSAYMPIGAILVSPE--V-SEVIHS 297 (447)
Q Consensus 230 l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d-------~v~~s--K~l~gg~~~~g~~~~~~~--~-~~~~~~ 297 (447)
|.++|++++++|++||+|.+.-.-. .+......+..| +++-| |.+++- -..+.+-.+.+ + .+.+..
T Consensus 189 I~~~~h~~~~~llvDEAhGah~~F~-~lp~~a~~~gad~~~~~~~~vvqS~HKtL~al-tQts~lh~~~~~~v~~~~~~~ 266 (417)
T PF01276_consen 189 IAEICHKHGIPLLVDEAHGAHFGFH-PLPRSALALGADRPNDPGIIVVQSTHKTLPAL-TQTSMLHVKGDRIVDHERVNE 266 (417)
T ss_dssp HHHHHCCTECEEEEE-TT-TTGGCS-GGGTTCSSTTSS-CTSBEEEEEEEHHHHSSS--TT-EEEEEETCCCTTHHHHHH
T ss_pred HHHHhcccCCEEEEEccccccccCC-CCccchhhccCccccccceeeeechhhccccc-ccceEEEecCCCcccHHHHHH
Confidence 9999999999999999986432222 222233445567 88777 766552 23455544333 2 233332
Q ss_pred ccCCCCccCcCCCCCCcHHHHHHHHHHHHHH-h--hhcHHHHHHHHHHHHHHhHhhc
Q 013204 298 QSNTLGSFSHGFTYSGHPVSCAVAIEALKIY-K--ERNIVEQVNKIAPKFQDGVKAF 351 (447)
Q Consensus 298 ~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~-~--~~~~~~~~~~~~~~l~~~L~~l 351 (447)
.+....|.+++-+-++..-.+.+.+ . -.++.++..++.+.+|+.++++
T Consensus 267 ------~l~~~~TTSPSY~lmASlD~a~~~m~~~~G~~l~~~~i~~a~~~R~~i~~~ 317 (417)
T PF01276_consen 267 ------ALSMHQTTSPSYPLMASLDVARAQMEEEEGRELLEEAIELAEEFRKKINRL 317 (417)
T ss_dssp ------HHHHHS-SS--HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHcCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 1222235555555555544555555 2 2446778888888899988543
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.9e-08 Score=92.80 Aligned_cols=239 Identities=18% Similarity=0.186 Sum_probs=133.7
Q ss_pred ChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccC
Q 013204 76 TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQ 155 (447)
Q Consensus 76 ~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 155 (447)
++-...|++.++++= +-+.++.++||..|+.+++.... +.+++|+..+..|.|.....-..- +
T Consensus 62 nPT~~~lE~~~a~LE---g~~~~~afsSGmaAI~~~~l~ll--------~~GD~vl~~~~~YG~t~~~~~~~l------~ 124 (396)
T COG0626 62 NPTRDALEEALAELE---GGEDAFAFSSGMAAISTALLALL--------KAGDHVLLPDDLYGGTYRLFEKIL------Q 124 (396)
T ss_pred CccHHHHHHHHHHhh---CCCcEEEecCcHHHHHHHHHHhc--------CCCCEEEecCCccchHHHHHHHHH------H
Confidence 455677888888872 55678999999999999887664 335889998888977632221100 0
Q ss_pred CCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHH
Q 013204 156 KFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVK 235 (447)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~ 235 (447)
.+++. +..++..+ .+.+++.+. ++++.+|.+|+.-+..--++. +++|+++|+
T Consensus 125 ~~gi~---~~~~d~~~------------------~~~~~~~~~---~~~tk~v~lEtPsNP~l~v~D----I~~i~~~A~ 176 (396)
T COG0626 125 KFGVE---VTFVDPGD------------------DEALEAAIK---EPNTKLVFLETPSNPLLEVPD----IPAIARLAK 176 (396)
T ss_pred hcCeE---EEEECCCC------------------hHHHHHHhc---ccCceEEEEeCCCCccccccc----HHHHHHHHH
Confidence 01111 01111100 134444443 246788899887555544444 999999999
Q ss_pred hcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCcccce-eEEEeCh-hHHHHhhhccCCCCccCcCCCC
Q 013204 236 KYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSAYMPI-GAILVSP-EVSEVIHSQSNTLGSFSHGFTY 311 (447)
Q Consensus 236 ~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg~~~~-g~~~~~~-~~~~~~~~~~~~~~~~~~~~t~ 311 (447)
++|+++|+|.+.... ..++-+..-.|+++ ..|-++|..=-+ |.++++. ++.+.+... .... .-.
T Consensus 177 ~~g~~vvVDNTfatP------~~q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~-----~~~~-~G~ 244 (396)
T COG0626 177 AYGALVVVDNTFATP------VLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFA-----QRAN-TGA 244 (396)
T ss_pred hcCCEEEEECCcccc------cccChhhcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHH-----HHhh-cCC
Confidence 999999999987521 22333344478886 458888732222 3455454 455544211 0000 112
Q ss_pred CCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccC-----CCce----------eeEeeeeeEEEEEeec
Q 013204 312 SGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD-----SPII----------GEIRGTGLILGTEFAD 373 (447)
Q Consensus 312 ~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~-----~~~~----------~~~~~~g~~~~i~~~~ 373 (447)
...|..+.-.+..++-+. -..++..++...+.+.|++-+. +|.. ....+.|.++.+.+..
T Consensus 245 ~l~p~dA~l~lRGlkTL~--~Rm~~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~ 319 (396)
T COG0626 245 VLSPFDAWLLLRGLRTLA--LRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKN 319 (396)
T ss_pred CCCHHHHHHHHhccchHH--HHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCC
Confidence 234555544444444221 1134444455555555554211 1110 0123578888888876
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.2e-08 Score=94.30 Aligned_cols=242 Identities=22% Similarity=0.198 Sum_probs=133.2
Q ss_pred HHHHHHHHHhcCcC------CCCeEEEeCChhhHHHHHHHHHHHHHH----hcCCC-CcceEEEEcCCCccchhhhhccc
Q 013204 80 LDLAKELLEMFTAS------KMAKVFFTNSGSEANDTQVKLVWYYNN----ALGRP-NKKKFIARQKSYHGSTLIAASLS 148 (447)
Q Consensus 80 ~~l~~~l~~~~~~~------~~~~v~~~~sGseA~~~Al~~~~~~~~----~~~~~-~~~~vi~~~~~yhg~~~~~~~~~ 148 (447)
.++.+++++++... +...-+|++|||+||..|+..+|.... ..+.. ..+.+++.+..-|-+..-+...-
T Consensus 82 ~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~~l 161 (373)
T PF00282_consen 82 REVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIEKAARIL 161 (373)
T ss_dssp HHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHHHHHHHT
T ss_pred HHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHHHhccee
Confidence 34445556555322 124688999999999999998875432 12211 23456777777787765555544
Q ss_pred CCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhC-CC-cEEEEEEccccCCCCCccCChhH
Q 013204 149 GLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEG-PE-TIAAFIAEPVIGAGGVIPPPATY 226 (447)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~-~~-~~a~vi~epv~~~~G~~~~~~~~ 226 (447)
|.. +..+++.+.++ .+.++|++.+.+.. .. .+.+|+........|.+-+
T Consensus 162 Glg------------~~~I~~~~~~~-------------md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~---- 212 (373)
T PF00282_consen 162 GLG------------VRKIPTDEDGR-------------MDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDP---- 212 (373)
T ss_dssp TSE------------EEEE-BBTTSS-------------B-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-S----
T ss_pred eeE------------EEEecCCcchh-------------hhHHHhhhhhcccccccccceeeeccCCCcccccccC----
Confidence 433 23333322211 11477888776532 22 3435555555555677765
Q ss_pred HHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCC-CCCeeeec--ccCCCcccceeEEEeChh-HHH-HhhhccCC
Q 013204 227 FEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSI-KPDLVSFA--KALSSAYMPIGAILVSPE-VSE-VIHSQSNT 301 (447)
Q Consensus 227 l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~-~~d~v~~s--K~l~gg~~~~g~~~~~~~-~~~-~~~~~~~~ 301 (447)
+++|.++|++|++++++|.++.|....-+..-.-..++ ..|-++++ |.+..+ ++.|+++.+.+ ... .+......
T Consensus 213 l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P-~~~~~~l~r~~~~l~~~~~~~~~Y 291 (373)
T PF00282_consen 213 LEEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVP-YGCGVLLVRDKSDLRDAFSINADY 291 (373)
T ss_dssp HHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-S-SS-EEEEESSGGGHHGGGEEEETC
T ss_pred HHHHhhhccccceeeeecccccccccccccccccccccccccccccchhhhhcCC-ccceeEEeecccchHHHhccChhh
Confidence 99999999999999999999887322211111122344 36777765 888777 68899888764 333 33211111
Q ss_pred CCcc---------CcCCCCCCc-HHHHHHHHHHHHHHhhhcHHH---HHHHHHHHHHHhHhhc
Q 013204 302 LGSF---------SHGFTYSGH-PVSCAVAIEALKIYKERNIVE---QVNKIAPKFQDGVKAF 351 (447)
Q Consensus 302 ~~~~---------~~~~t~~~~-~~~~~aa~a~l~~~~~~~~~~---~~~~~~~~l~~~L~~l 351 (447)
.... ....+...+ .......+.+++.+..+++.+ +..++.+++++.|++.
T Consensus 292 l~~~~~~~~~~~~~~~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~ 354 (373)
T PF00282_consen 292 LGNDDRESDESYDYGDYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKD 354 (373)
T ss_dssp TT-S-SSS-GGGCEEEGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hcccccccccccccccccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1100 000122212 345556667777766666554 4445666777777665
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-07 Score=97.49 Aligned_cols=316 Identities=13% Similarity=0.088 Sum_probs=159.3
Q ss_pred hHHHHHHHHHHHhcCcCCCCeEEEe-CChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCC-cccc
Q 013204 77 KPSLDLAKELLEMFTASKMAKVFFT-NSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGL-PALH 154 (447)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~~v~~~-~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~-~~~~ 154 (447)
....+-.+..++.| +.++.+|. ||.|.+|.+++..+. ++ ...|.++.+.|-+.+.++.++|. |.|.
T Consensus 205 G~I~eAq~~aA~~f---gA~~t~FlvNGST~gn~a~i~a~~--------~~-gd~Vlv~RN~HKSv~~al~L~ga~Pvyl 272 (755)
T PRK15029 205 GAFGESEKYAARVF---GADRSWSVVVGTSGSNRTIMQACM--------TD-NDVVVVDRNCHKSIEQGLILTGAKPVYM 272 (755)
T ss_pred cHHHHHHHHHHHHh---CCCcEEEEeCChhHHHHHHHHHhc--------CC-CCEEEeecccHHHHHHHHHHcCCeEEEe
Confidence 34445555666665 34455555 455556666665543 22 33455688999998888888875 4443
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCC-------CcEEEEEEccccCCCCCccCChhHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGP-------ETIAAFIAEPVIGAGGVIPPPATYF 227 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~-------~~~a~vi~epv~~~~G~~~~~~~~l 227 (447)
.+-.........+ +.+.+ ..+.+++.+.+... +..++|++.|.+- |.... +
T Consensus 273 ~P~~~~~Gi~~~i-------------~~~~~---~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY~--Gv~~d----i 330 (755)
T PRK15029 273 VPSRNRYGIIGPI-------------YPQEM---QPETLQKKISESPLTKDKAGQKPSYCVVTNCTYD--GVCYN----A 330 (755)
T ss_pred cccccccCCccCC-------------Ccccc---CHHHHHHHHHhCchhhhccccCceEEEEECCCCc--ceeeC----H
Confidence 2211000000000 00000 02667777654321 1125666666542 43333 8
Q ss_pred HHHHHHHHhcCCEEEEehhhcCCCcccccccc-ccC-----C-CCCC-eeeec--ccCCCcccceeEEEeChh---H-HH
Q 013204 228 EKVQAVVKKYDILFIADEVICAFGRLGTMFGC-DKY-----S-IKPD-LVSFA--KALSSAYMPIGAILVSPE---V-SE 293 (447)
Q Consensus 228 ~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~-~~~-----~-~~~d-~v~~s--K~l~gg~~~~g~~~~~~~---~-~~ 293 (447)
+.|.++|+++|++|++||+|.+....+..+.. ... . .-+| +++-| |.+++- -..+.+-.+.. + .+
T Consensus 331 ~~I~~~~h~~~~~llvDEAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~al-TQaS~LHv~~~~~~id~~ 409 (755)
T PRK15029 331 KEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNAL-SQASYIHVREGRGAINFS 409 (755)
T ss_pred HHHHHHHHhcCCeEEEECccccccccCccccccccccccccccCCCceEEEEchhhcccch-hhhhhheeCCCccccCHH
Confidence 99999999999999999998754322222211 111 1 2378 66656 655431 11223323211 1 12
Q ss_pred HhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHhHhhccC------CCce-------
Q 013204 294 VIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQDGVKAFSD------SPII------- 357 (447)
Q Consensus 294 ~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~------~~~~------- 357 (447)
.++. .+....|.+++-+-++..-.+...++. .++.++..+....+|+.+.++.. ..++
T Consensus 410 r~~~------~l~~~qSTSPSY~LmASLD~ar~~m~~~~G~~l~~~~i~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~ 483 (755)
T PRK15029 410 RFNQ------AYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEV 483 (755)
T ss_pred HHHH------HHHHHcCCCcHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhccccccccccccccccCccc
Confidence 2321 122223445554444444444444442 34566677777788888876622 0000
Q ss_pred -------------------------eeEeee-----e------eE-------EEEEeecCCCCCCCCCCCcchHHHHHHH
Q 013204 358 -------------------------GEIRGT-----G------LI-------LGTEFADNKSPNEPFPPEWGIGAYFGAQ 394 (447)
Q Consensus 358 -------------------------~~~~~~-----g------~~-------~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (447)
..+-+. | .+ +.|.......+ ..+.....-+..+.+.
T Consensus 484 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~lDp~Klti~~~~~g~s-G~~~~~gip~~~l~~~ 562 (755)
T PRK15029 484 VTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDLPDNWSMLDPIKVSILAPGMGED-GELEETGVPAALVTAW 562 (755)
T ss_pred cccccccccccccccchhhhccccceeeecccccccCcccccccccccCCceEEEEcCCCCCC-CcccccCCcHHHHHHH
Confidence 000000 0 00 00111000000 0000000012357788
Q ss_pred HHHcCceEEeeC-CEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 395 CEKHGMLVRVSG-DNIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 395 l~~~Gi~~~~~g-~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
|.++||.+--.+ ..+-+..+...|++++++++++|.+..+
T Consensus 563 L~~~gI~~E~~~~~~vL~l~s~g~t~~~~~~L~~aL~~~~~ 603 (755)
T PRK15029 563 LGRHGIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSFKR 603 (755)
T ss_pred HHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 888999988665 4566666678999999999999887644
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.2e-06 Score=76.23 Aligned_cols=355 Identities=16% Similarity=0.199 Sum_probs=185.4
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHH
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEAND 109 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~ 109 (447)
..+..++|+....|+... ..+--.+|.. +.-.++ -+...-.|++...+.+ +.+.++-+.-|--|-.
T Consensus 43 ~Sedv~IDLLTDSGTgam---s~~qwaamm~----GDEAYa----gsrs~~~L~~avkdif---Gfq~~iPthQGRgAE~ 108 (471)
T COG3033 43 DSEDVFIDLLTDSGTGAM---TDKQWAAMMR----GDEAYA----GSRSYYALADAVKDIF---GFQYTIPTHQGRGAEN 108 (471)
T ss_pred cccceEEEeeccCCcccc---cHHHHHHHhc----cchhhc----ccccHHHHHHHHHHhc---CceeeeeccCCccHHH
Confidence 445689999866544321 1222223322 222111 2334667888999987 5677888877766665
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (447)
..+..+.+.. -.-+.++.++|++.|.-.+-+-....|.....-. .+......++.| |+ +..+
T Consensus 109 Il~~i~ik~~---~~~pg~~~~~~sN~~FdTTr~h~~~ng~~~~n~~--~~ea~d~~~~~p--FK-----------Gd~D 170 (471)
T COG3033 109 ILIPILIKKG---EQEPGSKMVAFSNYHFDTTRGHIQINGATPRNVY--VDEAFDTEVKYP--FK-----------GNFD 170 (471)
T ss_pred HHHHHHhhhc---cccCCccccccccceecchhHHHHhcCCcccccc--ccccccccccCC--CC-----------CccC
Confidence 5555444321 1122366777776665555444443332211110 111111111111 11 1223
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccccccc------CC
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDK------YS 263 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~------~~ 263 (447)
++-|++++...+++.++-|+..-.+++.|..+.+-.-++++.++|++|++.+++|.+.. .... .|..+. +.
T Consensus 171 ~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~Rf--aENa-YFIk~rE~gYrd~s 247 (471)
T COG3033 171 LEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARF--AENA-YFIKQREPGYRDWS 247 (471)
T ss_pred HHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhh--hhhh-hhhhhcCccccccc
Confidence 68899999888887776665555455545577888899999999999999999997642 1111 111111 11
Q ss_pred C---------CCCeeeec-c--cCCCccccee-EEEeChh----HHHHhhhccCCCCccCc-CCCCCCc-HHHHHHHHHH
Q 013204 264 I---------KPDLVSFA-K--ALSSAYMPIG-AILVSPE----VSEVIHSQSNTLGSFSH-GFTYSGH-PVSCAVAIEA 324 (447)
Q Consensus 264 ~---------~~d~v~~s-K--~l~gg~~~~g-~~~~~~~----~~~~~~~~~~~~~~~~~-~~t~~~~-~~~~~aa~a~ 324 (447)
+ -.|-.++| | ++. .+| +++.+.+ +....... ..... ..|+++- --.+.+....
T Consensus 248 I~~IarEm~sYaD~~~mS~KKD~lv----nmGGfl~~~D~~~fDvy~~~~~~----~V~~eG~~tYGgl~GrdmealAvG 319 (471)
T COG3033 248 IEEIAREMYSYADGCTMSAKKDGLV----NMGGFLCFKDDSFFDVYEECRTL----VVVQEGFPTYGGLAGRDMEALAVG 319 (471)
T ss_pred HHHHHHHHHhhhhhheeecccccee----ccccEEEecCccHHHHHHHHHhh----eEeeccccccCcccchhHHHHHHH
Confidence 1 13444555 4 443 333 4555655 33333211 01111 1233221 1112222233
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeec--CCCCCCCCCCCcchHHHHHHH-HHHcCce
Q 013204 325 LKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFAD--NKSPNEPFPPEWGIGAYFGAQ-CEKHGML 401 (447)
Q Consensus 325 l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~-l~~~Gi~ 401 (447)
|....+.+++++.-+..++|.+.|.+. +.|++..+-|.+.++ +... +..+.+.|+ ++.|.-. -++.||-
T Consensus 320 L~e~~~~~yl~~Rv~Qv~YL~~~l~~~-GVpi~~paGGHavfv--da~~~lphip~eqFp-----aqala~ely~e~GiR 391 (471)
T COG3033 320 LREGVNFDYLAHRVAQVQYLADGLEEA-GVPIVQPAGGHAVFV--DAGKFLPHIPAEQFP-----AQALACELYKEAGIR 391 (471)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHhc-CCeeEecCCCceEEe--ehhhhcCCCChhhCc-----HHHHHHHHHHHhCee
Confidence 443334566666666678899999886 555555554444333 2211 111222233 2333333 3455665
Q ss_pred EEeeC------------------CEEEEecCCC-CCHHHHHHHHHHHHHHHHH
Q 013204 402 VRVSG------------------DNIMMSPPFI-MSPEEVDELISKYGKALKA 435 (447)
Q Consensus 402 ~~~~g------------------~~iR~~~~~~-~t~e~i~~~~~~l~~~l~~ 435 (447)
....| +.+|++.|-. -|.+++|..++.+++..+.
T Consensus 392 avElG~~~~~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~ 444 (471)
T COG3033 392 AVELGSFSLGRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKEN 444 (471)
T ss_pred eeeeeceecccCCCccccCCCchheeeEeccccccchhHHHHHHHHHHHHHhc
Confidence 54221 5689998744 5999999999999888764
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.8e-07 Score=99.93 Aligned_cols=284 Identities=12% Similarity=0.133 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCC-cceEEEEcCCCccchhhhhcccCCccccCC
Q 013204 78 PSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPN-KKKFIARQKSYHGSTLIAASLSGLPALHQK 156 (447)
Q Consensus 78 ~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 156 (447)
...++...++++. +-+..++.+..++|.+.++++...+ .+ ++ +++|++.+..| ..+...+.... ..
T Consensus 122 al~~~Qt~la~Lt-G~~~anaSl~d~aTAa~ea~~~a~~-~~-----~~~~~~vlv~~~~h-P~~~~v~~t~a-----~~ 188 (954)
T PRK05367 122 ALLNFQTMVADLT-GLEIANASLLDEATAAAEAMALAKR-VS-----KSKSNRFFVDDDVH-PQTLDVLRTRA-----EP 188 (954)
T ss_pred HHHHHHHHHHHHH-CCChhhccccccHHHHHHHHHHhhh-hc-----cCCCCEEEEcCccC-HHHHHHHHHHH-----Hh
Confidence 3345666777775 3455678999999999996665432 21 11 35676655544 44333221100 00
Q ss_pred CCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHh
Q 013204 157 FDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKK 236 (447)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~ 236 (447)
.++ .+..++.+ ++++ +++++++++.- .+..|.+.+ +++|.++|++
T Consensus 189 ~G~---ev~~~~~~--------------------~d~~-------~~~~~~vlvq~-p~~~G~i~d----~~~i~~~ah~ 233 (954)
T PRK05367 189 LGI---EVVVGDAA--------------------KALD-------HDDVFGVLLQY-PGTSGEVRD----YTALIAAAHA 233 (954)
T ss_pred CCC---EEEEecCc--------------------cCCC-------cccEEEEEEec-CCCCeeecc----HHHHHHHHHH
Confidence 010 01111211 1111 23566665544 455566765 9999999999
Q ss_pred cCCEEEEehhhcCCCccccccccccCCCCCCeeeec--c---cCCCcccceeEEEeChhHHHHhhhc--c---C--CCCc
Q 013204 237 YDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--K---ALSSAYMPIGAILVSPEVSEVIHSQ--S---N--TLGS 304 (447)
Q Consensus 237 ~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K---~l~gg~~~~g~~~~~~~~~~~~~~~--~---~--~~~~ 304 (447)
+|+++++|-.+..++..-.+ -.+-.|+++.+ | .++.|+...|++..++++.+.+... . . ....
T Consensus 234 ~Gal~~vda~~~Al~~l~~p-----ge~GaDi~vgs~qkfg~P~g~GGP~aGflavr~~~~r~lpgrivG~s~d~~g~~~ 308 (954)
T PRK05367 234 RGALVAVAADLLALTLLTPP-----GEMGADIAVGSAQRFGVPMGFGGPHAAYFAVRDAYKRSMPGRIVGVSVDAAGNPA 308 (954)
T ss_pred cCCEEEEEehhhhccCCCCh-----hhcCCCEEEeeCcccCCCCCCCCCCEEEEEECHHHHhhCCCCeeeeecccCCCcc
Confidence 99999999765322111111 12346888653 3 2343446789999999987766321 0 0 0000
Q ss_pred c------------CcCCCCC-CcHHHHHHHHHH--HHHHhhh---cHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeE
Q 013204 305 F------------SHGFTYS-GHPVSCAVAIEA--LKIYKER---NIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLI 366 (447)
Q Consensus 305 ~------------~~~~t~~-~~~~~~~aa~a~--l~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~ 366 (447)
+ ....|.. ....++.+..++ +..+... ++.+++..+..++++.|++. +..+... .....
T Consensus 309 ~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~-G~~~~~~--~~f~~ 385 (954)
T PRK05367 309 LRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRAL-GLEVVHD--SFFDT 385 (954)
T ss_pred cccccccccccccccccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc-CcccCCC--CCCCe
Confidence 0 0001111 111122222222 2333333 34567777888888888663 2222211 11111
Q ss_pred EEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-CCEEEEecCCCCCHHHHHHHHHHHH
Q 013204 367 LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-GDNIMMSPPFIMSPEEVDELISKYG 430 (447)
Q Consensus 367 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-g~~iR~~~~~~~t~e~i~~~~~~l~ 430 (447)
+.+.+. . ....+.++|+++||.+... ++.+|++|+...|++||+++++.|.
T Consensus 386 ~~~~~~--~-----------~~~~i~~~l~~~gi~~~~~~~~~l~is~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 386 LTVEVG--G-----------DAAAVLARALAAGINLRRVDDDHVGISLDETTTREDLAALLAVFG 437 (954)
T ss_pred EEEeCC--C-----------CHHHHHHHHHHCCceeccccCCEEEEEecccCCHHHHHHHHHHHc
Confidence 122221 1 1456889999999999765 4679999999999999999999997
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.3e-06 Score=89.77 Aligned_cols=316 Identities=13% Similarity=0.092 Sum_probs=154.0
Q ss_pred hHHHHHHHHHHHhcCcCCCCeEEEe-CChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhh-hhcccCC-ccc
Q 013204 77 KPSLDLAKELLEMFTASKMAKVFFT-NSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLI-AASLSGL-PAL 153 (447)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~~v~~~-~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~-~~~~~~~-~~~ 153 (447)
....+-.+..++.| +.++.+|. ||.|.+|.+++..+. + +...|.++.+.|-+... ++..+|. |.|
T Consensus 174 G~i~eAq~~AA~~f---gAd~tyFlvNGTS~gn~a~i~a~~--------~-~Gd~VLvdRN~HKSv~hgaLiLsGa~PVY 241 (720)
T PRK13578 174 GAAKDAQKHAAKVF---NADKTYFVLNGTSASNKVVTNALL--------T-PGDLVLFDRNNHKSNHHGALIQAGATPVY 241 (720)
T ss_pred hHHHHHHHHHHHHh---CCCceEEEeCChhHHHHHHHHHhc--------C-CCCEEEeecccHHHHHHHHHHHcCCeEEE
Confidence 34445555666665 34455555 555666666666553 2 23455678899999775 3666664 555
Q ss_pred cCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCC-------cEEEEEEccccCCCCCccCChhH
Q 013204 154 HQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPE-------TIAAFIAEPVIGAGGVIPPPATY 226 (447)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~-------~~a~vi~epv~~~~G~~~~~~~~ 226 (447)
..+-.........+ +.+.+. .+.+++.+.+..++ -.++||..|.+ .|....
T Consensus 242 l~P~~n~~Gi~g~I-------------~~~~~~---~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY--dG~~yd---- 299 (720)
T PRK13578 242 LETARNPFGFIGGI-------------DAHCFD---EEYLREQIREVAPERADEARPFRLAVIQLGTY--DGTIYN---- 299 (720)
T ss_pred eeccccccCCcCCC-------------ChHHcc---HHHHHHHHHhcCccccccccCceEEEEECCCC--cceeec----
Confidence 43221111111111 111111 15577777654222 24466666653 243333
Q ss_pred HHHHHHH-HHhcCCEEEEehhhcCCCccccc---cccccCCCCCC----eeeec--ccCCCcccceeEEEeChhH-----
Q 013204 227 FEKVQAV-VKKYDILFIADEVICAFGRLGTM---FGCDKYSIKPD----LVSFA--KALSSAYMPIGAILVSPEV----- 291 (447)
Q Consensus 227 l~~l~~l-~~~~g~~li~DEv~~g~g~~g~~---~~~~~~~~~~d----~v~~s--K~l~gg~~~~g~~~~~~~~----- 291 (447)
++.|.++ |+.++ +|++||++.+.-.-... +.-......+| +++=| |-+++= -..+.+-.+.+.
T Consensus 300 i~~I~~~~~h~~~-~llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~al-TQaS~LHvk~~~i~g~~ 377 (720)
T PRK13578 300 ARQVVDKIGHLCD-YILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGF-SQTSQIHKKDNHIKGQA 377 (720)
T ss_pred HHHHHHHhhccCC-cEEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcchhh-hhHhhhhcCCccccccc
Confidence 8899998 78888 99999998754322221 11011223466 66666 655431 122333232211
Q ss_pred ----HHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHhH-hhccCCCcee--eE-
Q 013204 292 ----SEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQDGV-KAFSDSPIIG--EI- 360 (447)
Q Consensus 292 ----~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L-~~l~~~~~~~--~~- 360 (447)
.+.++. .+....|.+++-+-+++.-.+-..++. ..+.+...+....+|+.+ +.+....... .+
T Consensus 378 ~~v~~~r~~~------al~m~qSTSPsY~LmASLDva~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~~~p~~v~ 451 (720)
T PRK13578 378 RYCPHKRLNN------AFMLHASTSPFYPLFAALDVNAKMHEGESGRRLWMECVKLGIEARKLILARCKLIRPFIPPVVD 451 (720)
T ss_pred ccCCHHHHHH------HHHHHcCCChHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHhCCCeeeccccccc
Confidence 122221 112222334333333322222333332 345667777777788777 4433221110 00
Q ss_pred ---------------------------eeeee------E-----EEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceE
Q 013204 361 ---------------------------RGTGL------I-----LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLV 402 (447)
Q Consensus 361 ---------------------------~~~g~------~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~ 402 (447)
+|... + +.|....-......+.....-+..+.+.|.++||.+
T Consensus 452 ~~~~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lDP~KltI~t~G~~~~~G~~~~~Gipg~~l~~~L~e~gI~~ 531 (720)
T PRK13578 452 GKPWQDYPTEQIASDLRFFSFEPGEKWHGFEGYAEDQYFVDPCKLLLTTPGIDAETGEYEDFGIPATILANYLRENGIVP 531 (720)
T ss_pred ccccccCchhhhcccccccccccCccccccccccccccccCCceEEEEcCCcCcccccccccCccHHHHHHHHHHcCCEE
Confidence 00000 0 001110000000000000001456778887889998
Q ss_pred EeeC-CEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 403 RVSG-DNIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 403 ~~~g-~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
.-.+ ..+-+..+...|++++++++++|.+.-+
T Consensus 532 E~~d~~~vL~l~s~g~t~~~~~~Lv~aL~~f~~ 564 (720)
T PRK13578 532 EKCDLNSILFLLTPAEDMAKLQQLVAMLARFEK 564 (720)
T ss_pred EecCCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 8765 4566666678999999999999987644
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.8e-06 Score=87.23 Aligned_cols=311 Identities=14% Similarity=0.158 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHhcCcCCCCeEEEeCCh-hhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCC-ccccC
Q 013204 78 PSLDLAKELLEMFTASKMAKVFFTNSG-SEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGL-PALHQ 155 (447)
Q Consensus 78 ~~~~l~~~l~~~~~~~~~~~v~~~~sG-seA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~-~~~~~ 155 (447)
...+-++..++.| +.++.+|..+| |.+|.+++..+. + +...|.++.+.|-+...++..+|. |.|..
T Consensus 196 ~i~eAe~~aA~~f---gAd~tyfvvNGTS~~n~av~~a~~--------~-~Gd~VLvdRN~HKSv~~aLilsga~PVYl~ 263 (713)
T PRK15399 196 PHLEAEEYIARTF---GAEQSYIVTNGTSTSNKIVGMYAA--------P-AGSTLLIDRNCHKSLAHLLMMSDVVPIWLK 263 (713)
T ss_pred HHHHHHHHHHHHh---CCCcEEEEeCChHHHHHHHHHHhc--------C-CCCEEEeecccHHHHHHHHHHcCCeeEEec
Confidence 3445555666665 44566666555 667777776653 2 334555788999998778877774 55543
Q ss_pred CCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCC--cEEEEEEccccCCCCCccCChhHHHHHHHH
Q 013204 156 KFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPE--TIAAFIAEPVIGAGGVIPPPATYFEKVQAV 233 (447)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~--~~a~vi~epv~~~~G~~~~~~~~l~~l~~l 233 (447)
+-.........+ +.+.+. .+.+++.+.+.... ..++||..|.+ .|.... ++.|.++
T Consensus 264 P~~n~~Gi~g~I-------------~~~~~~---~e~I~~~i~~~p~~~~p~~vvit~pTY--dGi~yd----~~~I~~~ 321 (713)
T PRK15399 264 PTRNALGILGGI-------------PRREFT---RDSIEEKVAATTQAQWPVHAVITNSTY--DGLLYN----TDWIKQT 321 (713)
T ss_pred ccccccCCcCCC-------------Chhhcc---HHHHHHHHHhCCCcCCceEEEEECCCC--CceeeC----HHHHHHH
Confidence 221111111111 111111 26677777654321 14677776643 343433 7778887
Q ss_pred HHhcCCEE-EEehhhcCCCccccc----cccccCCCCCCee---eec--ccCCCcccceeEEEeChhH-HHHhhhccCCC
Q 013204 234 VKKYDILF-IADEVICAFGRLGTM----FGCDKYSIKPDLV---SFA--KALSSAYMPIGAILVSPEV-SEVIHSQSNTL 302 (447)
Q Consensus 234 ~~~~g~~l-i~DEv~~g~g~~g~~----~~~~~~~~~~d~v---~~s--K~l~gg~~~~g~~~~~~~~-~~~~~~~~~~~ 302 (447)
| |+.+ ++||++.+.-.-... .+.. .+-.+|.+ +-| |-+++= -..+.+-.+..+ .+.++.
T Consensus 322 ~---g~~~ilvDEAhgah~~F~p~~~~~sam~-~~~~aD~~i~~tQStHKtL~al-TQaS~iHvk~~vd~~~~n~----- 391 (713)
T PRK15399 322 L---DVPSIHFDSAWVPYTHFHPIYQGKSGMS-GERVPGKVIFETQSTHKMLAAF-SQASLIHIKGEYDEETFNE----- 391 (713)
T ss_pred h---CCCEEEEeccchhhhhcCcccCCcChhh-CCCCCCeeeeeeeehhcccccc-chheeeeecCCCCHHHHHH-----
Confidence 7 6777 599998754322221 1111 11146766 444 655541 233444343322 122221
Q ss_pred CccCcCCCCCCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHhHhhccC------CCceee--E-----------
Q 013204 303 GSFSHGFTYSGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQDGVKAFSD------SPIIGE--I----------- 360 (447)
Q Consensus 303 ~~~~~~~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~------~~~~~~--~----------- 360 (447)
.+....|.+++-+-+++.-.+...++. ..+.+...+....+|+.+.++.+ +.+... +
T Consensus 392 -a~~m~~STSPsY~LmASLD~a~~~m~~~~G~~l~~~~i~~a~~fR~~l~~~~~~~~~w~f~~~~~~~~~~~~~w~l~p~ 470 (713)
T PRK15399 392 -AFMMHTSTSPSYPIVASVETAAAMLRGNPGKRLINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDEAECWPVAPG 470 (713)
T ss_pred -HHHHHcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccccccCceeeecCccccCCccceecCCC
Confidence 222223444444444433344444432 34667777788888888876522 111000 0
Q ss_pred ---eeeee------E-----EEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEEEecCCCCCHHHHHHH
Q 013204 361 ---RGTGL------I-----LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIMMSPPFIMSPEEVDEL 425 (447)
Q Consensus 361 ---~~~g~------~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR~~~~~~~t~e~i~~~ 425 (447)
+|... + +.+..+.-. ....+.....-+..+.+.|.++||.+.-.+ ..+-+..+...|+++++++
T Consensus 471 ~~whgf~~~~~~~~~lDP~KltI~t~g~~-~~g~~~~~Gi~g~~l~~~L~e~gI~~E~~d~~~vL~l~s~g~t~~~~~~L 549 (713)
T PRK15399 471 EQWHGFKDADADHMFLDPVKVTILTPGMD-EQGNMSEEGIPAALVAKFLDERGIVVEKTGPYNLLFLFSIGIDKTKAMGL 549 (713)
T ss_pred cccccccccccccccCCCceEEEEecCcc-cccccccCCCCHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHH
Confidence 00000 0 001111000 000000111124567788999999988765 4566776788999999999
Q ss_pred HHHHHHHHH
Q 013204 426 ISKYGKALK 434 (447)
Q Consensus 426 ~~~l~~~l~ 434 (447)
+++|.+.-+
T Consensus 550 ~~aL~~f~~ 558 (713)
T PRK15399 550 LRGLTEFKR 558 (713)
T ss_pred HHHHHHHHH
Confidence 998887633
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.1e-06 Score=86.11 Aligned_cols=308 Identities=14% Similarity=0.138 Sum_probs=157.6
Q ss_pred hHHHHHHHHHHHhcCcCCCCeEEEeCCh-hhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCC-cccc
Q 013204 77 KPSLDLAKELLEMFTASKMAKVFFTNSG-SEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGL-PALH 154 (447)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~~v~~~~sG-seA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~-~~~~ 154 (447)
....+-.+..++.| +.++.+|..+| |.+|.+++..+. + +...|.++.+.|-+...++..+|. |.|.
T Consensus 195 G~i~eAe~~AA~~f---gAd~tyfvvNGTS~~n~av~~a~~--------~-~Gd~VLvdRN~HKSv~haLilsga~PVYl 262 (714)
T PRK15400 195 GPHKEAEEYIARVF---NADRSYMVTNGTSTANKIVGMYSA--------P-AGSTVLIDRNCHKSLTHLMMMSDVTPIYF 262 (714)
T ss_pred hHHHHHHHHHHHHh---CCCcEEEEeCchHHHHHHHHHHhc--------C-CCCEEEeecccHHHHHHHHHHcCCeEEEe
Confidence 34455556666665 45566666555 667776666553 2 334556789999998778887774 5554
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCC--cEEEEEEccccCCCCCccCChhHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPE--TIAAFIAEPVIGAGGVIPPPATYFEKVQA 232 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~--~~a~vi~epv~~~~G~~~~~~~~l~~l~~ 232 (447)
.+-.........++. +.+. .+.+++.+.+.... ..++||..|.+ .|.... ++.|.+
T Consensus 263 ~P~rn~~Gi~g~I~~-------------~~~~---~e~i~~~i~~~p~ak~p~~~vit~pTY--dG~~yd----~~~I~~ 320 (714)
T PRK15400 263 RPTRNAYGILGGIPQ-------------SEFQ---HATIAKRVKETPNATWPVHAVITNSTY--DGLLYN----TDFIKK 320 (714)
T ss_pred cccccccCCccCCCc-------------cccC---HHHHHHHHHhCccccCccEEEEECCCC--ccEecC----HHHHHH
Confidence 322111111111110 0110 26677777654221 12577777743 244433 889999
Q ss_pred HHHhcCCEEEEehhhcCCCcccccc----ccccCCCCC-C--eeeec--ccCCCcccceeEEEe----C-hhHHHHhhhc
Q 013204 233 VVKKYDILFIADEVICAFGRLGTMF----GCDKYSIKP-D--LVSFA--KALSSAYMPIGAILV----S-PEVSEVIHSQ 298 (447)
Q Consensus 233 l~~~~g~~li~DEv~~g~g~~g~~~----~~~~~~~~~-d--~v~~s--K~l~gg~~~~g~~~~----~-~~~~~~~~~~ 298 (447)
+|+.++ +++||++.+.-.-...+ +.. .+-.+ | +++=| |-+++= -..+.+-. + +.+.+.+.
T Consensus 321 ~~~~~~--ilvDEAwgah~~F~p~~~~~sam~-~ga~~~~~i~vtQStHKtL~al-TQaS~LHvkg~vd~~~~n~a~~-- 394 (714)
T PRK15400 321 TLDVKS--IHFDSAWVPYTNFSPIYEGKCGMS-GGRVEGKVIYETQSTHKLLAAF-SQASMIHVKGDVNEETFNEAYM-- 394 (714)
T ss_pred HhCCCC--EEEEccchhhhccCcccCCcChhh-cCCCCCCceEEEEchhhcccch-hHHhHHHHcCCCCHHHHHHHHH--
Confidence 998887 68999987553222211 111 12111 3 55555 655431 11122111 2 22333332
Q ss_pred cCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHhHhhccC------CCcee-e-E-------
Q 013204 299 SNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQDGVKAFSD------SPIIG-E-I------- 360 (447)
Q Consensus 299 ~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~------~~~~~-~-~------- 360 (447)
...|.+++-+-+++.-.+...++. ..+.+...+....+|+.+.++.. ..+.. + +
T Consensus 395 --------m~~STSPsY~l~ASLD~a~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~~~~~~~~~w~ 466 (714)
T PRK15400 395 --------MHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWP 466 (714)
T ss_pred --------HHcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCcccCceEEecChhhcccchhcc
Confidence 223444443334433344444432 34667777788888888877632 11100 0 0
Q ss_pred -------eeeeeE-----------EEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEEEecCCCCCHHH
Q 013204 361 -------RGTGLI-----------LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIMMSPPFIMSPEE 421 (447)
Q Consensus 361 -------~~~g~~-----------~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR~~~~~~~t~e~ 421 (447)
+|...+ +.+..+... ....+.....-+..+.+.|.++||.+.-.+ ..+-+..+...|+++
T Consensus 467 ~~p~~~whgf~~~~~~~~~lDP~Klti~tpgi~-~~g~~~~~Gipg~~v~~~L~e~gI~~E~~d~~~iLfl~s~g~t~~~ 545 (714)
T PRK15400 467 LRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMK-KDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTK 545 (714)
T ss_pred cCccccccCcccccccccccCCceEEEEeCCCC-CCccccccCCCHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHH
Confidence 000000 001111100 000000011114457788899999988765 457777778999999
Q ss_pred HHHHHHHHHHHH
Q 013204 422 VDELISKYGKAL 433 (447)
Q Consensus 422 i~~~~~~l~~~l 433 (447)
+++++++|.+.-
T Consensus 546 ~~~L~~aL~~f~ 557 (714)
T PRK15400 546 ALSLLRALTDFK 557 (714)
T ss_pred HHHHHHHHHHHH
Confidence 999999988763
|
|
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.4e-06 Score=79.50 Aligned_cols=338 Identities=14% Similarity=0.170 Sum_probs=167.9
Q ss_pred EEEecCCccccccCCCCCHHHHHHHHHHHhcC---CcccccCcCCChHHHHHHHHHHHhcCcCC-----CC--eEEEeCC
Q 013204 34 KYLDSLAGLWCTALGGSEPRLVAAATAQLNTL---PFYHSFWNRTTKPSLDLAKELLEMFTASK-----MA--KVFFTNS 103 (447)
Q Consensus 34 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~--~v~~~~s 103 (447)
..+|+.-|..-+--| -+.+..+++++-+.+ ..... ..+-+...++.+.+.+++-+.+ .+ ..+=+.|
T Consensus 27 ~KVNLgIGvY~de~G--k~pvl~aV~~Ae~~l~~~~~~k~--Yl~i~G~~~f~~~~~~llFG~d~~~l~~~Rv~t~Qt~G 102 (396)
T COG1448 27 NKVNLGIGVYKDEDG--KTPVLRAVKKAEKRLLEQEKTKN--YLPIEGLPEFLEAVQKLLFGADSPALAEDRVATVQTLG 102 (396)
T ss_pred CeeeeeeeeeeCCCC--CcchhHHHHHHHHHhhccccccc--cCCcCCcHHHHHHHHHHhcCCCcHHHHhhhHhheecCC
Confidence 456665554444444 233444444333221 11111 1233445555565555542211 12 3344679
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChh
Q 013204 104 GSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEE 183 (447)
Q Consensus 104 GseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (447)
||-|+..+.+.+... .++..|-+-+|++.-+.... ...|... ..+|.+ +.....
T Consensus 103 GTGAL~~~A~fl~~~------~~~~~vwis~PtW~NH~~If-~~aGl~v--------------~~Y~Yy---d~~~~~-- 156 (396)
T COG1448 103 GTGALRVAADFLARF------FPDATVWISDPTWPNHKAIF-EAAGLEV--------------ETYPYY---DAETKG-- 156 (396)
T ss_pred cchHHHHHHHHHHHh------CCCceEEeCCCCcHhHHHHH-HhcCCce--------------eeeecc---cccccc--
Confidence 999998888865433 34466888888884442211 1112111 011111 011111
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc--cccccc
Q 013204 184 EYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT--MFGCDK 261 (447)
Q Consensus 184 ~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~--~~~~~~ 261 (447)
.+++.+-..+.......+-++.-+..|++| +-++.+-+++|.++.++.+.+-++|=+|.||+.-.. ..+...
T Consensus 157 ----~df~~mla~L~~a~~~~vvLLH~CcHNPTG--~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~ 230 (396)
T COG1448 157 ----LDFDGMLADLKTAPEGSVVLLHGCCHNPTG--IDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRL 230 (396)
T ss_pred ----ccHHHHHHHHHhCCCCCEEEEecCCCCCCC--CCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHH
Confidence 112444444444444445333333345554 667889999999999999999999999999953221 111111
Q ss_pred C-CCCCCe-e--eecccCCCcccceeEEE---eChhHHHHhhhccCCCCccCcCCCCCCcH-HHHHHHHHHHH--HHh--
Q 013204 262 Y-SIKPDL-V--SFAKALSSAYMPIGAIL---VSPEVSEVIHSQSNTLGSFSHGFTYSGHP-VSCAVAIEALK--IYK-- 329 (447)
Q Consensus 262 ~-~~~~d~-v--~~sK~l~gg~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~aa~a~l~--~~~-- 329 (447)
+ ...+.+ + +|||.|+-=+-|+|++. -+++..+.+... ... ..-++|+.+| -++......|+ .+.
T Consensus 231 ~a~~~~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sq---lk~-~iR~~ySnPP~~Ga~vva~IL~~p~Lra~ 306 (396)
T COG1448 231 FAEVGPELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQ---LKA-IIRTNYSNPPAHGAAVVATILNNPELRAE 306 (396)
T ss_pred HHHhCCcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHH---HHH-HHHhccCCCchhhHHHHHHHhCCHHHHHH
Confidence 1 112333 3 37897774115777543 355555554431 001 1112343222 23333323332 111
Q ss_pred ----hhcHHHHHHHHHHHHHHhHhhc-cC--CCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceE
Q 013204 330 ----ERNIVEQVNKIAPKFQDGVKAF-SD--SPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLV 402 (447)
Q Consensus 330 ----~~~~~~~~~~~~~~l~~~L~~l-~~--~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~ 402 (447)
-.+.++++.+++..|.+.|++. .. ...+..- .| |+. +..-. .+++.+.-.+.||+.
T Consensus 307 W~~El~~Mr~Ri~~mR~~lv~~L~~~~~~~~f~~i~~Q--~G-MFs--y~Gls------------~~QV~rLree~~IY~ 369 (396)
T COG1448 307 WEQELEEMRQRILEMRQALVDALKALGAPRNFDFIISQ--RG-MFS--YTGLS------------PEQVDRLREEFGIYL 369 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchHhhc--Cc-eee--cCCCC------------HHHHHHHHHhccEEE
Confidence 1234566666777777777664 22 2222221 22 222 11110 223434444678888
Q ss_pred EeeCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 013204 403 RVSGDNIMMSPPFIMSPEEVDELISKYGKA 432 (447)
Q Consensus 403 ~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~ 432 (447)
...| |++.. ..+++.|+.+.+++.++
T Consensus 370 v~sG---Ri~va-Gl~~~ni~~va~ai~~v 395 (396)
T COG1448 370 VASG---RINVA-GLNTSNIDYVAKAIAAV 395 (396)
T ss_pred ecCC---eeeec-cCChhhHHHHHHHHHhh
Confidence 7666 77754 78999999999998875
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.8e-06 Score=83.41 Aligned_cols=315 Identities=14% Similarity=0.155 Sum_probs=182.8
Q ss_pred hHHHHHHHHHHHhcCcCCCCeEEEe-CChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccC
Q 013204 77 KPSLDLAKELLEMFTASKMAKVFFT-NSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQ 155 (447)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~~v~~~-~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 155 (447)
....+|++.+|++. +.|.+.|- |||+.+-.+.++.+|.|...+|+.- ..|....-+.||..-......|..
T Consensus 582 ~lf~~Le~~Lc~iT---G~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~h-RnvClIPvSAHGTNPASA~Magmk---- 653 (1001)
T KOG2040|consen 582 QLFTELEKDLCEIT---GFDSFSLQPNSGAQGEYAGLRVIRAYLESKGEGH-RNVCLIPVSAHGTNPASAAMAGMK---- 653 (1001)
T ss_pred HHHHHHHHHhheee---cccceeecCCCCcccchhhHHHHHHHHHhccCCc-ceeEEEeecccCCChhhHHhcCCE----
Confidence 34457777787774 77777777 5999999999999999999988644 445555668999854443333322
Q ss_pred CCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHH
Q 013204 156 KFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVK 235 (447)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~ 235 (447)
+..+.+.. .+..++.+|+....++ .++.+++++.=.. +.|..-+ -+++++++.+
T Consensus 654 --------vvpV~~~~-------------~G~id~~dLk~kaekh-~~~Laa~MvTYPS-T~GvfE~---~i~d~cd~iH 707 (1001)
T KOG2040|consen 654 --------VVPVGCDA-------------NGNIDMVDLKAKAEKH-KDNLAALMVTYPS-THGVFEE---GIDDICDIIH 707 (1001)
T ss_pred --------EEEeeccC-------------CCCccHHHHHHHHHHh-hhhhheeEEeccc-ccccccc---cHHHHHHHHH
Confidence 12222221 1223357777666544 3567777775432 2344333 3899999999
Q ss_pred hcCCEEEEehh----hcCCCccccccc-cccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCC----CCccC
Q 013204 236 KYDILFIADEV----ICAFGRLGTMFG-CDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNT----LGSFS 306 (447)
Q Consensus 236 ~~g~~li~DEv----~~g~g~~g~~~~-~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~----~~~~~ 306 (447)
+||--++.|-+ |.|+-+.|..++ ..++++.- ||+=.-|||+.++|-+..++.+...+-.++-. ...-.
T Consensus 708 ehGGQVYlDGANMNAqVGlc~pGd~GaDV~HLNLHK---TFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~ 784 (1001)
T KOG2040|consen 708 EHGGQVYLDGANMNAQVGLCRPGDIGADVCHLNLHK---TFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTS 784 (1001)
T ss_pred hcCCEEEecCCCccceecccCCccccccceeecccc---eeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCC
Confidence 99999999965 446655554332 22333222 45545667667777777777776655332100 00000
Q ss_pred cCCCC----CCcHHHHHHHHHHHHHHhhhcHHH---HHHHHHHHHHHhHhhccCCCceeeEeeeeeEEE----EEeecCC
Q 013204 307 HGFTY----SGHPVSCAVAIEALKIYKERNIVE---QVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILG----TEFADNK 375 (447)
Q Consensus 307 ~~~t~----~~~~~~~~aa~a~l~~~~~~~~~~---~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~----i~~~~~~ 375 (447)
..++. +++..-+...++-++.+...++.+ ..--+..++.++|+.- ++++ .++.-..++ +++..-+
T Consensus 785 ~~gsVsaaP~Gsa~ILpISwaYikmMG~~GL~~as~~AiLNaNYMakRLe~h--Ykil--~~~~~~~vaHEFIlD~r~fK 860 (1001)
T KOG2040|consen 785 PVGSVSAAPWGSALILPISWAYIKMMGSGGLKDASKIAILNANYMAKRLESH--YKIL--FRGENGLVAHEFILDLRPFK 860 (1001)
T ss_pred CccceeccCCCcceeehhHHHHHHHhcccccchhhHHHhhhhHHHHHHHhhc--ccee--EecCCcceeeeeeeechhhc
Confidence 01111 222233334566677776555432 2223556666666542 2221 111111222 2332222
Q ss_pred CCCCCCCCCcchHHHHHHHHHHcCceEE----eeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 376 SPNEPFPPEWGIGAYFGAQCEKHGMLVR----VSGDNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~l~~~Gi~~~----~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
.+.. ..+..+.++|.+.|+..- |..+.+.+-|.-.-+.+|+|+++++|-..-+++++
T Consensus 861 ~~ag------ieavDvAKRL~DYgFHaPTmswPV~gtLMIEPTESE~k~ElDRfcdAliSIreEI~~ 921 (1001)
T KOG2040|consen 861 KTAG------IEAVDVAKRLMDYGFHAPTMSWPVAGTLMIEPTESEDKAELDRFCDALISIREEIAQ 921 (1001)
T ss_pred cccC------CcHHHHHHHHHhccCCCCccccccCCceEeccCccccHHHHHHHHHHHHHHHHHHHH
Confidence 1110 125568999999998754 33478999999999999999999998777666553
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=6e-06 Score=77.99 Aligned_cols=244 Identities=16% Similarity=0.132 Sum_probs=137.0
Q ss_pred EEEecCCccccccCCC--CCHHHHHHHHHHHhcCCcc--cccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHH
Q 013204 34 KYLDSLAGLWCTALGG--SEPRLVAAATAQLNTLPFY--HSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEAND 109 (447)
Q Consensus 34 ~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~ 109 (447)
.+++.++..-..+||- -+|++++++.+.+...... +...+....-...+++.++.. .+.+.++.++.-+.|+.
T Consensus 21 ~viN~~G~v~~t~lG~s~~~~e~iea~~~~~~~~v~Le~~l~~g~~~~R~~~~~~~~~~~---~~aea~~ivnnn~aAVl 97 (395)
T COG1921 21 RVINAIGTVLMTNLGRSLYSPEAIEAMKEAMRAPVELETDLKTGKRGARLTELAELLCGL---TGAEAAAIVNNNAAAVL 97 (395)
T ss_pred hhhhhhhhheeccCCCccCCHHHHHHHHHHhcccceeeeecccchhhHHHHHHHHHHhcc---cchhheeeECCcHHHHH
Confidence 4455555334456664 4789999998888653221 101111112222444444444 35667888998888888
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcC---CCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQK---SYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYS 186 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~---~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (447)
.++.... .++..|+..-+ ++|......+...|..... +... +.
T Consensus 98 l~~~al~--------~~~EvVis~g~lV~gg~~~v~d~~~~aG~~l~E------------vG~t--------n~------ 143 (395)
T COG1921 98 LTLNALA--------EGKEVVVSRGELVEGGAFRVPDIIRLAGAKLVE------------VGTT--------NR------ 143 (395)
T ss_pred HHHhhhc--------cCCeEEEEccccccCCCCChhHHHHHcCCEEEE------------eccc--------Cc------
Confidence 8777552 23344444321 3554544444444422110 0000 00
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCC
Q 013204 187 TRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKP 266 (447)
Q Consensus 187 ~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~ 266 (447)
....+.+..+.... ....-+..+.++..+.+. ++++.++|++||+++|+|..-....+ -.+........-+
T Consensus 144 -t~~~d~~~AIne~t--a~llkV~s~~~~f~~~l~-----~~~l~~ia~~~~lpvivD~aSg~~v~-~e~~l~~~la~Ga 214 (395)
T COG1921 144 -THLKDYELAINENT--ALLLKVHSSNYGFTGMLS-----EEELVEIAHEKGLPVIVDLASGALVD-KEPDLREALALGA 214 (395)
T ss_pred -CCHHHHHHHhccCC--eeEEEEeecccccccccc-----HHHHHHHHHHcCCCEEEecCCccccc-cccchhHHHhcCC
Confidence 01366777775311 122333444445555443 78899999999999999965321111 1111122334458
Q ss_pred Ceeeec--ccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhc
Q 013204 267 DLVSFA--KALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERN 332 (447)
Q Consensus 267 d~v~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~ 332 (447)
|+|+|| |.|+| ...|.+++++++++.+...+ ....+-.....+++..++|+....++
T Consensus 215 DLV~~SgdKllgG--PqaGii~GkKelI~~lq~~~-------l~Ralrv~K~tla~l~~aLe~y~~~~ 273 (395)
T COG1921 215 DLVSFSGDKLLGG--PQAGIIVGKKELIEKLQSHP-------LKRALRVDKETLAALEAALELYLQPE 273 (395)
T ss_pred CEEEEecchhcCC--CccceEechHHHHHHHHhhh-------hhhhhhcCcHhHHHHHHHHHHHcCch
Confidence 999998 77877 57899999999998887431 11233445677777778888766543
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00031 Score=71.79 Aligned_cols=248 Identities=19% Similarity=0.170 Sum_probs=134.0
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHH-----hcCCC------------------------
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN-----ALGRP------------------------ 125 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~-----~~~~~------------------------ 125 (447)
.+....++.+++++++.. +...-.|++|||+||..||-++|.... ....+
T Consensus 121 ~t~lE~~vi~~la~l~G~-~~~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~ 199 (608)
T TIGR03811 121 TSQMEEEVGKEFATLMGY-KNGWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLE 199 (608)
T ss_pred HHHHHHHHHHHHHHHhCC-CCCCeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhccccccccccccc
Confidence 445566777888888743 234677999999999999999986431 00000
Q ss_pred --------------------CcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHH
Q 013204 126 --------------------NKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEY 185 (447)
Q Consensus 126 --------------------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (447)
.+..+++....-|-+..-+...-|. ....+..+|+...++
T Consensus 200 ~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGl---------G~~~vv~VpvD~~~r----------- 259 (608)
T TIGR03811 200 SAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGI---------GLDQVIPVPVDSNYR----------- 259 (608)
T ss_pred ccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCC---------CcccEEEeecCCCCc-----------
Confidence 0011233333445554444333322 112233444433222
Q ss_pred HHHHHHHHHHHHHhh--CCCcEEEEEEccccCCCCCccCChhHHHHHHHHH---HhcCC--EEEEehhhcCCCcc---cc
Q 013204 186 STRLANNLEDLILKE--GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV---KKYDI--LFIADEVICAFGRL---GT 255 (447)
Q Consensus 186 ~~~~~~~le~~l~~~--~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~---~~~g~--~li~DEv~~g~g~~---g~ 255 (447)
.+++.|++.+... ....+.+|+...-..+.|.+-| +++|.++| +++|+ ++++|.++.|+.+. ..
T Consensus 260 --md~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDp----l~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~ 333 (608)
T TIGR03811 260 --MDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDG----IDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDE 333 (608)
T ss_pred --CCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCC----HHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccc
Confidence 1246777776543 1223445555555555677766 89998888 77898 69999999886311 00
Q ss_pred -----c-------------c-----------ccccCCC-CCCeeeec--ccCCCcccceeEEEeCh-hHHHHhhhccCCC
Q 013204 256 -----M-------------F-----------GCDKYSI-KPDLVSFA--KALSSAYMPIGAILVSP-EVSEVIHSQSNTL 302 (447)
Q Consensus 256 -----~-------------~-----------~~~~~~~-~~d~v~~s--K~l~gg~~~~g~~~~~~-~~~~~~~~~~~~~ 302 (447)
+ | .....++ ..|-+++. |.+.-+ ++.|+++.+. .+.+.+.......
T Consensus 334 ~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~P-y~~G~ll~Rd~~~~~~~~~~a~Yl 412 (608)
T TIGR03811 334 DDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIP-YSAGGIVIQDIRMRDVISYFATYV 412 (608)
T ss_pred cccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEeCcccccccC-CCeEEEEEeCHHHHHHHhcCcchh
Confidence 0 0 0011233 36777765 776666 5888888765 4444443221111
Q ss_pred Cc-------cCcCCCCCCcH--HHHHHHHHHHHHH--hhhc---HHHHHHHHHHHHHHhHhh
Q 013204 303 GS-------FSHGFTYSGHP--VSCAVAIEALKIY--KERN---IVEQVNKIAPKFQDGVKA 350 (447)
Q Consensus 303 ~~-------~~~~~t~~~~~--~~~~aa~a~l~~~--~~~~---~~~~~~~~~~~l~~~L~~ 350 (447)
.. .....+..+.. ..+++.+.+++.+ ..++ +.++.-+..+++.+.|++
T Consensus 413 ~~~~~~~p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~ 474 (608)
T TIGR03811 413 FEKGADIPALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNN 474 (608)
T ss_pred ccccccCcccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 00001222222 3355566777766 3333 455666677777777766
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.7e-05 Score=71.96 Aligned_cols=354 Identities=17% Similarity=0.191 Sum_probs=177.2
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCccc-ccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHH
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYH-SFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEAN 108 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~ 108 (447)
.||+.-+...|+. ...+ +|+..+-+.+....+-..+ ..+........+....+++++......--.-+.||||+.
T Consensus 76 ld~~~~~~~vS~~--v~~~--~~~~~~l~~~~~~k~N~l~~d~fp~~~~~e~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~ 151 (491)
T KOG1383|consen 76 LDGNPRLGLASGV--VYWG--EPELDKLIMEAYNKFNPLHPDEFPVVRKLEAECVNMIANLFNAPSDSCGCGTVGGSESG 151 (491)
T ss_pred cCCCcccCeeeEE--EecC--CcchhhHHHHHHhhcCccCccccchhHHHHHHHHHHHHHHhcCCccccCccccccchHH
Confidence 4566444444443 3333 7777777777776531112 223334555566677777777432212223457899998
Q ss_pred HHHHHHHHHHHHh-cCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC-CcccCCCCCCChhHHH
Q 013204 109 DTQVKLVWYYNNA-LGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP-HYWRYAHPGETEEEYS 186 (447)
Q Consensus 109 ~~Al~~~~~~~~~-~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 186 (447)
..+.+..+..... ++-. +..++.. -+-|....-+.. -| ......+++. ..++
T Consensus 152 l~~~k~~~~~r~~~k~I~-~p~iv~~-~~v~~a~eK~a~---------yf---~v~l~~V~~~~~~~~------------ 205 (491)
T KOG1383|consen 152 LAAKKSYRNRRKAQKGID-KPNIVTP-QNVHAAFEKAAR---------YF---EVELREVPLDEGDYR------------ 205 (491)
T ss_pred HHHHHHHHHHHHhccCCC-Cccccch-HHHHHHHHHHHh---------hE---EEEEEeeeccccceE------------
Confidence 8888766544332 2221 2333322 122222111100 01 1112233332 1222
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHh-cCCEEEEehhhcCCCcc-ccccccccCCC
Q 013204 187 TRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKK-YDILFIADEVICAFGRL-GTMFGCDKYSI 264 (447)
Q Consensus 187 ~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~-~g~~li~DEv~~g~g~~-g~~~~~~~~~~ 264 (447)
-|+.++..... .++.+++.+..+-..|.+-+ +++|.++.-+ |++++++|..-.||--. +.. ....++.
T Consensus 206 ----~D~~k~~~~i~-eNti~lv~~~~~~p~G~~e~----ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~-~~~~fdF 275 (491)
T KOG1383|consen 206 ----VDPGKVVRMID-ENTIMLVGSLPNFPTGEIED----VEKLADLLLEIWDIPIHVDACLGGFINPAGYL-NEEEFDF 275 (491)
T ss_pred ----ecHHHHHHHhc-cceEEEEEEcCCCCccchhh----HHHHHHHHHHHhCCceeecccCcccccccccc-Ccccccc
Confidence 23444443333 45667777766666665544 8999999888 99999999988877332 211 1122333
Q ss_pred C----CCeeeec-c-cCCCcccceeEEEeC-hhH-HHHhhhccCCCCccCcCCCCCCcHH--HHHHHHHHHHHHhhhcH-
Q 013204 265 K----PDLVSFA-K-ALSSAYMPIGAILVS-PEV-SEVIHSQSNTLGSFSHGFTYSGHPV--SCAVAIEALKIYKERNI- 333 (447)
Q Consensus 265 ~----~d~v~~s-K-~l~gg~~~~g~~~~~-~~~-~~~~~~~~~~~~~~~~~~t~~~~~~--~~~aa~a~l~~~~~~~~- 333 (447)
. +.+-+-+ | ++.- .++++++-+ +++ .+.+....+..+....+.|..++-. -.++.++++=.+..++.
T Consensus 276 r~p~V~Sisa~~HKYGl~~--~G~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~ 353 (491)
T KOG1383|consen 276 RVPGVTSISADGHKYGLAP--AGSSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLGEEGYR 353 (491)
T ss_pred CCCCceeEeeccceeeeee--cCcEEEEEcccccccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHhhHHHHH
Confidence 2 2233333 2 3332 445666643 443 3444333333444333334333221 12233444433334443
Q ss_pred --HHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEe--eCCEE
Q 013204 334 --VEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV--SGDNI 409 (447)
Q Consensus 334 --~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~--~g~~i 409 (447)
.+++.+..+.+++.++++.+..+++. ..+.+...+....+ --.+.+.|.+.|.++-. ....+
T Consensus 354 ~~~~~ive~~~~l~egie~i~~i~i~gk-----p~vs~~~~~s~~~~---------i~elsd~l~~~GW~lnalq~P~a~ 419 (491)
T KOG1383|consen 354 ENTQNIVETARKLREGIENIKGIKIVGK-----PLVSFILFGSNDVN---------IFELSDLLRKKGWILNALQFPAAI 419 (491)
T ss_pred HHHHHHHHHHHHHHHhhhccccceecCC-----CcEEEEEccCCccc---------hhhhhHHHHhcCcCccccCCCCce
Confidence 45666777888888888643333221 11223332222111 12377888899987642 12344
Q ss_pred EEecCCCCCHHH-HHHHHHHHHHHHHHHHHH
Q 013204 410 MMSPPFIMSPEE-VDELISKYGKALKATEER 439 (447)
Q Consensus 410 R~~~~~~~t~e~-i~~~~~~l~~~l~~~~~~ 439 (447)
-++....+..++ .++++.-+++++++++..
T Consensus 420 Hi~vt~~~~~~~~A~~~v~Di~~~~~el~~~ 450 (491)
T KOG1383|consen 420 HICVTRVHAREDVADRFVADIRKVVEELKSL 450 (491)
T ss_pred EEEEEeeeccHHHHHHHHHHHHHHHHHHHhC
Confidence 444445555555 578888888888887653
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00022 Score=75.65 Aligned_cols=286 Identities=12% Similarity=0.157 Sum_probs=150.2
Q ss_pred hHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCC
Q 013204 77 KPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQK 156 (447)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 156 (447)
+...++...++++. +-+...+.+..+++.+-|+++...+.. ++ ++++|++ +.+-|..+...+.... ..
T Consensus 109 e~l~e~Qt~i~eLt-Gm~~aNaSl~d~atA~aEa~~~a~~~~---~~--~~~~vlv-~~~~hP~~~~v~~t~a-----~~ 176 (939)
T TIGR00461 109 EALLNFQTVVSDLT-GLPVANASLLDEGTAAAEAMALSFNVS---KK--KANKFFV-AKDLHPQTKSVLHTRA-----KP 176 (939)
T ss_pred HHHHHHHHHHHHHH-CCChhhhhccchhhHHHHHHHHHHHhh---cC--CCCEEEE-CCCCCcchHHHHHHHH-----Hh
Confidence 33446667777775 123335577888888877555443211 11 2356655 4555555433322110 11
Q ss_pred CCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHh
Q 013204 157 FDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKK 236 (447)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~ 236 (447)
.++. +..++ .++|++.+ +++++++...+.. |.+-. +++|.+++++
T Consensus 177 ~g~~---v~~~~---------------------~~~l~~~~------~~~~v~~q~Pn~~-G~ied----~~~i~~~~h~ 221 (939)
T TIGR00461 177 FGIE---VIVVD---------------------CSDIKKAV------DVFGCLLQYPATD-GSILD----YKQLIDALHS 221 (939)
T ss_pred cCcE---EEEEc---------------------HHHHhhcC------CEEEEEEECCCCC-eEEec----HHHHHHHHHH
Confidence 1110 11111 13343322 3667777555444 44532 8999999999
Q ss_pred cCCEEEEehhhcCCCccccccccccCCCCCCeeee-cc----cCCCcccceeEEEeChhHHHHhhhc-----cCCCC--c
Q 013204 237 YDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF-AK----ALSSAYMPIGAILVSPEVSEVIHSQ-----SNTLG--S 304 (447)
Q Consensus 237 ~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~-sK----~l~gg~~~~g~~~~~~~~~~~~~~~-----~~~~~--~ 304 (447)
+|+++|++--...++..-.++ .+-.|+++- +| .+++|+.-.|++.+++++...+-.. ....+ .
T Consensus 222 ~gal~~~~ad~~al~ll~~Pg-----e~GaDi~vg~~q~fg~p~g~GGP~aG~~a~~~~l~r~lPgrivG~s~D~~G~~~ 296 (939)
T TIGR00461 222 HKSLVSVAADLMALTLLTPPG-----HYGADIVLGSSQRFGVPMGYGGPHAAFFAVKDEYNRKMPGRIVGVSKDALGNTA 296 (939)
T ss_pred cCCEEEEEechHHhCCcCCHH-----HcCCcEEeeCCCccCCCCCCCCCceeeeeecHhhHhhCCCCceeEEecCCCCcc
Confidence 999999865443222111111 123687742 34 4455556688888888877665321 00000 0
Q ss_pred cC--------c------CCCCCCcHHHHHHHHHH--HHHHhhhcH---HHHHHHHHHHHHHhHhhccCCCceeeEeeeee
Q 013204 305 FS--------H------GFTYSGHPVSCAVAIEA--LKIYKERNI---VEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGL 365 (447)
Q Consensus 305 ~~--------~------~~t~~~~~~~~~aa~a~--l~~~~~~~~---~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~ 365 (447)
+. | .+..+.+...++ ..++ +..+..+++ .+++..+..++.+.|++. ++.++.. ..--
T Consensus 297 ~~l~LqtReqhIrRekAtSNICt~qaL~a-~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~-G~~~~~~--~fF~ 372 (939)
T TIGR00461 297 LRLALQTREQHIRRDKATSNICTAQVLLA-NVASSYCVYHGPKGLKNIARRIHSLTSILANGLEND-PHELINK--TWFD 372 (939)
T ss_pred ceeecccccccccccccCcchhHHHHHHH-HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCC--Cccc
Confidence 00 0 001111111111 1112 333334433 456666777888888774 3332211 1000
Q ss_pred EEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEEEecCCCCCHHHHHHHHHHHH
Q 013204 366 ILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIMMSPPFIMSPEEVDELISKYG 430 (447)
Q Consensus 366 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR~~~~~~~t~e~i~~~~~~l~ 430 (447)
-+.+.+... ....+.++++++||.++... +.++++..-.+|++||+.+++.|.
T Consensus 373 ~~~v~~~~~------------~~~~i~~~~~~~gi~l~~~~~~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 373 TLTVKVGNG------------ISSELLKAAEEFNINLRAVDTTTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred eEEEEeCCC------------CHHHHHHHHHHCCCeeeecCCCEEEEEeecCCCHHHHHHHHHHhc
Confidence 112333111 14568899999999988653 579999999999999999999995
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00022 Score=64.34 Aligned_cols=343 Identities=17% Similarity=0.193 Sum_probs=180.9
Q ss_pred ccCCCCCHHHHHHHHHHHhc---CC-ccc----ccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHH
Q 013204 45 TALGGSEPRLVAAATAQLNT---LP-FYH----SFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVW 116 (447)
Q Consensus 45 ~~lG~~~p~v~~a~~~~~~~---~~-~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~ 116 (447)
++||..+......+.+.++. +. .+| ..|....+++..+...+. +...++|-+++|=+ +|...+.+.+
T Consensus 74 NSLGLmPK~t~~~~~~eLDkWak~av~gH~~GkvPW~~~De~il~l~~~iV----GA~e~EvavmNsLT-vNlh~Ll~sF 148 (465)
T KOG3846|consen 74 NSLGLMPKSTRNSINAELDKWAKCAVEGHFKGKVPWVSIDEPILPLLAPIV----GAQENEVAVMNSLT-VNLHSLLISF 148 (465)
T ss_pred cccccCchhhHhHHHHHHHHHHhhhhhcccccccceeecchhhhhhhhhhc----cCCchhhhhHhhhh-hHHHHHHHHh
Confidence 67898888777777776654 21 111 123333445555444333 23455666666443 4444444433
Q ss_pred HHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHH
Q 013204 117 YYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDL 196 (447)
Q Consensus 117 ~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~ 196 (447)
+. -...|-+|+.-..+|....++.-+... ..+..+....+ . -.|.+-++... .+|+-+.
T Consensus 149 yK----PTekR~KILlE~kaFPSDhYAiesQ~~----lhG~~~e~sm~-~---------iePREGEetlR---teDILd~ 207 (465)
T KOG3846|consen 149 YK----PTEKRFKILLEKKAFPSDHYAIESQCK----LHGISPENSMI-Q---------IEPREGEETLR---TEDILDT 207 (465)
T ss_pred cC----CcchhhhhhhccCCCCchHHHHHhhhh----hcCCChHHheE-E---------ecccccccchh---HHHHHHH
Confidence 21 113356777767777655433222110 00111100000 0 01122222222 1344444
Q ss_pred HHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec--cc
Q 013204 197 ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KA 274 (447)
Q Consensus 197 l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~ 274 (447)
+... .+.+|+|++..++--+|.... +.+|-..-+..|+++-+|=+|. +|-. + .+......|+.|.. |-
T Consensus 208 IEkn-gDeiA~v~fSGvqyYTGQ~Fd----i~aIT~Agq~kgc~VGfDLAHA-vgNV--p--L~LHdWgVDFACWCSYKY 277 (465)
T KOG3846|consen 208 IEKN-GDEIALVCFSGVQYYTGQYFD----IGAITFAGQFKGCLVGFDLAHA-VGNV--P--LQLHDWGVDFACWCSYKY 277 (465)
T ss_pred HHhc-CCeEEEEEeecceeecccccc----hhhhhhcccCCCcEechhhhhh-hcCC--c--eEEeecCCceEEEeeecc
Confidence 4433 478999999999988887765 6666665666799999998886 5432 2 22223346888753 53
Q ss_pred CCCcccceeEEEeChhHHH----Hhhhc--cCCCCcc-----------CcCCCCC-CcHHHHHHHHHHHHHHhhhcHHHH
Q 013204 275 LSSAYMPIGAILVSPEVSE----VIHSQ--SNTLGSF-----------SHGFTYS-GHPVSCAVAIEALKIYKERNIVEQ 336 (447)
Q Consensus 275 l~gg~~~~g~~~~~~~~~~----~~~~~--~~~~~~~-----------~~~~t~~-~~~~~~~aa~a~l~~~~~~~~~~~ 336 (447)
+..|.-++|.+...++..+ ++... ......| .-+.-.+ ++.+..++..++|++...-. .+.
T Consensus 278 lnaGaGgIgGlFvHekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~q~~-~~~ 356 (465)
T KOG3846|consen 278 LNAGAGGIGGLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFAQFN-INE 356 (465)
T ss_pred cccCCCccceeeeehhhhcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHHHhh-HHH
Confidence 3322224565555443222 22110 0000000 0111112 22334455557777765433 333
Q ss_pred HHH----HHHHHHHhHhhc--cCCCc-----------eeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcC
Q 013204 337 VNK----IAPKFQDGVKAF--SDSPI-----------IGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHG 399 (447)
Q Consensus 337 ~~~----~~~~l~~~L~~l--~~~~~-----------~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 399 (447)
+++ ++.++...++.. .+++. +..+..+|..+.+.|..+. ..+.++|.++|
T Consensus 357 lRkrS~lLTgYleyL~k~~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fssp~-------------~~vfqeL~krG 423 (465)
T KOG3846|consen 357 LRKRSLLLTGYLEYLLKASKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFSSPT-------------PKVFQELHKRG 423 (465)
T ss_pred HhhhhhhHHhHHHHHHHHhcccCchhhhcceeEEEeCCcccccccceEEEEeCCCc-------------hHHHHHHHHcC
Confidence 444 444444444443 12221 1233445777777776543 24778999999
Q ss_pred ceEEee-CCEEEEec-CCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 400 MLVRVS-GDNIMMSP-PFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 400 i~~~~~-g~~iR~~~-~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
+++--. .++||+.| |++++-.|+-.+++.|.+++..++
T Consensus 424 v~~DkR~PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~d~~e 463 (465)
T KOG3846|consen 424 VIGDKRRPNVIRVAPVPLYNTFSDVYIFVNALNEAMDKLE 463 (465)
T ss_pred eeccccCCCceEeecchhhccHHHHHHHHHHHHHHHHHhh
Confidence 987644 37899998 588999999999999999988764
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.1e-06 Score=80.30 Aligned_cols=124 Identities=19% Similarity=0.200 Sum_probs=53.3
Q ss_pred HHHHHHHHhhCCCcEEEEEEccccCC-CCCc-cCChhHHHHHHHHHHhcCCEEEEehhhc------CCCccccccccccC
Q 013204 191 NNLEDLILKEGPETIAAFIAEPVIGA-GGVI-PPPATYFEKVQAVVKKYDILFIADEVIC------AFGRLGTMFGCDKY 262 (447)
Q Consensus 191 ~~le~~l~~~~~~~~a~vi~epv~~~-~G~~-~~~~~~l~~l~~l~~~~g~~li~DEv~~------g~g~~g~~~~~~~~ 262 (447)
.|.++.+. +++.+.+-+-+.|-. .|.. .++ ++++.+++++|++++|.|-.-. .+|..+.+-..+..
T Consensus 127 ~Dye~AI~---e~Ta~ll~Vh~Sn~~i~GFt~~~~---~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~ 200 (367)
T PF03841_consen 127 SDYEKAIT---ENTAALLKVHTSNFRIQGFTGEVS---LEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYL 200 (367)
T ss_dssp ----------------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CC
T ss_pred cccccccc---cccccccccccccccccccccccc---HHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHh
Confidence 55666664 334444456555432 1211 222 8999999999999999995431 12222233333444
Q ss_pred CCCCCeeeec--ccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh
Q 013204 263 SIKPDLVSFA--KALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK 329 (447)
Q Consensus 263 ~~~~d~v~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~ 329 (447)
..-+|+|+|| |.++| ...|.+++++++++.++..+ ..-.+-..-+.+++..++|+...
T Consensus 201 ~~GaDlV~fSGdKlLGG--PQaGiI~Gkk~lI~~lk~~p-------l~RalrvdK~tla~L~atL~~Y~ 260 (367)
T PF03841_consen 201 AAGADLVTFSGDKLLGG--PQAGIIVGKKELIEKLKKHP-------LGRALRVDKLTLAALEATLRLYL 260 (367)
T ss_dssp CCT-SEEEEETTSSSSS---S-EEEEEEHHHHHHHHHHH-------HTTT-B--HHHHHHHHHHHHH--
T ss_pred hcCCCEEEEECCCcCCC--CCeEEEEeCHHHHHHHhhCC-------CcceEeeCHHHHHHHHHHHHHHH
Confidence 4458999998 77877 46899999999999987531 11234456777887778887543
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=98.27 E-value=9.8e-05 Score=71.59 Aligned_cols=286 Identities=13% Similarity=0.133 Sum_probs=127.9
Q ss_pred hHHHHHHHHHHHhcCcCCCCeE--EEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc
Q 013204 77 KPSLDLAKELLEMFTASKMAKV--FFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154 (447)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~~v--~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 154 (447)
..+-++...++++. +++-+ -...+++.+-|+++.+.+.. . .++++|++ ..+-|+.+...+.....+
T Consensus 110 q~lfe~Qs~i~eLT---GmdvaNaSlyd~atA~aEa~~ma~r~~----~-~~~~~vlv-~~~~hP~~~~v~~t~a~~--- 177 (429)
T PF02347_consen 110 QALFEYQSMICELT---GMDVANASLYDGATAAAEAMLMAVRAT----K-RKRNKVLV-PESLHPQTRAVLRTYAAP--- 177 (429)
T ss_dssp HHHHHHHHHHHHHH---TSSEE-SEBSSCCHHHHHHHHHHHHHH----T-T---EEEE-ETTS-CHHHHHHHHHCCH---
T ss_pred HHHHHHHHHHHHhh---CCCccCCCCCChhHHHHHHHHHHHHhc----c-cCCcEEEE-cCCcChhhHHHHHHhhhh---
Confidence 44457788888886 55543 55566666666554444433 1 11345555 556777665443322111
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
.+ ..+..+++.+... .+ .+++++|++...+.-| .+ -+ +++|.+++
T Consensus 178 --~g---~~iv~~~~~~~~~----------------~d---------~~~~a~v~vq~Pn~~G-~~-ed---~~~i~~~~ 222 (429)
T PF02347_consen 178 --LG---IEIVEVPLDEDGT----------------TD---------DDDTAAVMVQNPNTFG-VF-ED---IKEIADIA 222 (429)
T ss_dssp --CC---EEEEEE-BBTTCS----------------B----------STTEEEEEEESS-TTS-B---T---HHHHHHHH
T ss_pred --CC---eEEEEecccccCC----------------cc---------ccCeEEEEeecCCCCc-eE-ee---HHHHHHHH
Confidence 11 1112222211100 01 3679999998887665 33 22 99999999
Q ss_pred HhcCCEEEEehhhc-CCCccccccccccCCCCCCeee-ecc----cCCCcccceeEEEeChhHHHHhhhc-----cCCCC
Q 013204 235 KKYDILFIADEVIC-AFGRLGTMFGCDKYSIKPDLVS-FAK----ALSSAYMPIGAILVSPEVSEVIHSQ-----SNTLG 303 (447)
Q Consensus 235 ~~~g~~li~DEv~~-g~g~~g~~~~~~~~~~~~d~v~-~sK----~l~gg~~~~g~~~~~~~~~~~~~~~-----~~~~~ 303 (447)
+++|+++|+ -+-- .++-.-.++ . +-.|+++ -+| .+++|+..+|++.++++++..+-.. ....+
T Consensus 223 h~~gal~~~-~ad~~aL~~l~~Pg---e--~GADI~vg~~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G 296 (429)
T PF02347_consen 223 HAAGALVIV-GADPNALGGLKSPG---E--YGADIVVGEHQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKDADG 296 (429)
T ss_dssp HHTT-EEEE-CGGCCGCCTC--GG---G--GT-SEEEECCTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCC
T ss_pred HHcCCEEEE-ecCHHHHhCcCChh---h--cCccEEeeCCCCCcccCCCCCCCeeeEEEhhhhhhhCCCceecccccccc
Confidence 999999986 2211 111111111 1 2358874 234 4455667889999999977655221 00000
Q ss_pred --cc--------------CcCCCCCCcHHHHH-HHHHHHHHHhhhc---HHHHHHHHHHHHHHhHhhccCCCceeeEeee
Q 013204 304 --SF--------------SHGFTYSGHPVSCA-VAIEALKIYKERN---IVEQVNKIAPKFQDGVKAFSDSPIIGEIRGT 363 (447)
Q Consensus 304 --~~--------------~~~~t~~~~~~~~~-aa~a~l~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~ 363 (447)
.+ -..+..+.|..-++ ++..-+..+..++ +.+....+..++++.|+++...++. ..
T Consensus 297 ~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~~~~~~~----~~ 372 (429)
T PF02347_consen 297 KRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKIYGLPFD----NP 372 (429)
T ss_dssp SCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTBECSS----SS
T ss_pred cceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC----CC
Confidence 00 01123333333322 2223334444444 4467777888888888875111111 11
Q ss_pred eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-CCEEEEecCCCCCHHHHHHHHHHH
Q 013204 364 GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-GDNIMMSPPFIMSPEEVDELISKY 429 (447)
Q Consensus 364 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-g~~iR~~~~~~~t~e~i~~~~~~l 429 (447)
.+.-..+..... . ....+.++....|+..... .+.+-+++.=.+|++|||++++.|
T Consensus 373 -~f~e~v~~~~~~-~--------~~~~l~~~~~~~gl~~~~~~~~~~li~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 373 -FFFEFVVVFSKD-K--------EVEELLKRGIEGGLNLRYPDDGALLICVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp -SBSSEEEEESS--H--------HHHHHHHTT----EEEGGG-SSEEEEE--TT--HHHHHHHHH--
T ss_pred -CceeeeeecCCc-H--------HHHHHHHHHHhcCCCccccCCCeEEEEccCCCCHHHHHHHHhcC
Confidence 111111111110 0 1222444444555332211 357899999999999999999875
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.2e-05 Score=70.80 Aligned_cols=323 Identities=15% Similarity=0.182 Sum_probs=158.7
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHH----hcCCCCcceEEEE-cCCCccchhhhhcccCCccccC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN----ALGRPNKKKFIAR-QKSYHGSTLIAASLSGLPALHQ 155 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~----~~~~~~~~~vi~~-~~~yhg~~~~~~~~~~~~~~~~ 155 (447)
++..++.+...+..-.+-+|++||+-+|.-|+.++|..+. ..|...-...|.| +.--|=+..-+...-|.
T Consensus 145 ~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~lg~----- 219 (510)
T KOG0629|consen 145 EVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAAFLGL----- 219 (510)
T ss_pred HHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHHHHhcc-----
Confidence 4455666665543324678999999999999999985431 2222222344444 33444443222221111
Q ss_pred CCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCC--cEEEEEEccccCCCCCccCChhHHHHHHHH
Q 013204 156 KFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPE--TIAAFIAEPVIGAGGVIPPPATYFEKVQAV 233 (447)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~--~~a~vi~epv~~~~G~~~~~~~~l~~l~~l 233 (447)
+.. ....+++. ..+....+|||+.+..++.+ .+..|-+..-...-|..-| |+.|+++
T Consensus 220 --gtd--~c~~v~t~-------------e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDd----L~~iadi 278 (510)
T KOG0629|consen 220 --GTD--HCIKVKTD-------------ERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDD----LNGIADI 278 (510)
T ss_pred --CCc--eeEEeccc-------------ccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCc----HHHHHHH
Confidence 100 01112221 12223358999988664332 2333333332222365555 9999999
Q ss_pred HHhcCCEEEEehhhcCCCccccccccccCCCC-CCeeeec--ccCCCcccceeEEEeChh-HHHHhhhccC----CCCcc
Q 013204 234 VKKYDILFIADEVICAFGRLGTMFGCDKYSIK-PDLVSFA--KALSSAYMPIGAILVSPE-VSEVIHSQSN----TLGSF 305 (447)
Q Consensus 234 ~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~-~d~v~~s--K~l~gg~~~~g~~~~~~~-~~~~~~~~~~----~~~~~ 305 (447)
|++|+.++++|.+..|---.....-+...|+. .|-++.+ |-++.+ ++.++.+.+.+ +++....... +...+
T Consensus 279 C~k~~lWmHvDAAwGGglLmS~k~R~kl~Giera~SvtwnpHK~~gap-lqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~ 357 (510)
T KOG0629|consen 279 CEKHKLWMHVDAAWGGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAP-LQCSAFLTREEGLLQRCNQMSAIYLFQQDKF 357 (510)
T ss_pred HHhcCEEEEeecccccccccChhhHhhccCccccCceeecHHHhhcCc-chhhHHHHHHHHHHHhhcccchhhhhccCce
Confidence 99999999999887542122111112334553 6777775 777776 78888887765 3443322110 00000
Q ss_pred CcCCCCC-CcH-HHHHHHHHHHHH---Hhh---h---cHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecC
Q 013204 306 SHGFTYS-GHP-VSCAVAIEALKI---YKE---R---NIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADN 374 (447)
Q Consensus 306 ~~~~t~~-~~~-~~~~aa~a~l~~---~~~---~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~ 374 (447)
.. .++. ++- +-|..-.-..+. .++ . .-.++.-++.+++.+.|++...+..+....++-..+.+.+..+
T Consensus 358 Yd-vS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~~~pe~~nv~fw~vp~ 436 (510)
T KOG0629|consen 358 YD-VSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEMLFELEPEHVNVCFWYVPP 436 (510)
T ss_pred ee-cccccccchhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccceehhcCCCceEEEeeccCch
Confidence 00 0111 111 111111111211 111 2 2345666788888888887643333222222211112211111
Q ss_pred CCC-CCCCC----CCcchHHHHHHHHHHcCceEE---eeC---CEEE--EecCCCCCHHHHHHHHHHHHHH
Q 013204 375 KSP-NEPFP----PEWGIGAYFGAQCEKHGMLVR---VSG---DNIM--MSPPFIMSPEEVDELISKYGKA 432 (447)
Q Consensus 375 ~~~-~~~~~----~~~~~~~~~~~~l~~~Gi~~~---~~g---~~iR--~~~~~~~t~e~i~~~~~~l~~~ 432 (447)
.-. ...-+ .-.+.+-.+..+|.++|.... |.+ +.+| +++| +.+.+++|.+++.|++.
T Consensus 437 ~lR~~~~~~e~~~rL~kVaPkIK~~Mm~~Gt~Mi~YqPl~~~~nffr~v~sn~-a~~~ad~dflldEIerl 506 (510)
T KOG0629|consen 437 SLRGWQENPERDSRLVKVAPKIKERMMKKGTTMIGYQPLGDKPNFFRMVISNP-ALTEADLDFLLDEIERL 506 (510)
T ss_pred HhccCcccchhhhHHHhhCcHHHHHHHhccceeeEecccccccchhheecccc-hhhhhhHHHHHHHHHHh
Confidence 100 00000 111223446677888885533 333 3334 4444 67899999999988764
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0052 Score=58.51 Aligned_cols=290 Identities=13% Similarity=0.164 Sum_probs=149.3
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP 160 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 160 (447)
++...++++. +-+.........+|.+-|+++.+.+.. + .+++++++ +..-|..+...+... .+++++.
T Consensus 124 efQtlv~dLT-Gm~VANASm~DeaTAaAEAm~ma~r~~----k-~k~~~~~V-~~~vhpqt~~Vl~Tr-----a~~~g~~ 191 (450)
T COG0403 124 EFQTLVADLT-GLDVANASMLDEATAAAEAMLMAKRVT----K-KKRNKFLV-PKDVHPQTLDVLRTR-----AEGLGIE 191 (450)
T ss_pred HHHHHHHHHh-CCCcccchhhhhHHHHHHHHHHHHHhh----c-CcCceEEe-cCCCCHHHHHHHHhh-----cccCceE
Confidence 3444555554 223334555666776666665544422 1 22455554 667777766555422 2222211
Q ss_pred CCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCE
Q 013204 161 APFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240 (447)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~ 240 (447)
+...++. ++++|++. ..+.+.+++++-.+..|.... -+..|.+.++++|++
T Consensus 192 ---i~~~~~~------------------d~~~l~~~----~~~~~~gv~vQyP~~~G~~~~----d~~~l~~~~h~~~al 242 (450)
T COG0403 192 ---IEVVDAD------------------DLDDLESA----DDGDVFGVLVQYPNTFGIVEE----DLRALIEAAHSAGAL 242 (450)
T ss_pred ---EEEeccc------------------hhhhhhhc----cccCeEEEEEecCCCCCccch----hHHHHHHHHhhcCCE
Confidence 1111110 13555554 235789999998876663332 299999999999998
Q ss_pred EEE--ehhhcCCCccccccccccCCCCCCeee-----ecccCCCcccceeEEEeChhHHHHhhhc----c-CCC--Ccc-
Q 013204 241 FIA--DEVICAFGRLGTMFGCDKYSIKPDLVS-----FAKALSSAYMPIGAILVSPEVSEVIHSQ----S-NTL--GSF- 305 (447)
Q Consensus 241 li~--DEv~~g~g~~g~~~~~~~~~~~~d~v~-----~sK~l~gg~~~~g~~~~~~~~~~~~~~~----~-~~~--~~~- 305 (447)
+++ |=+--++ .-.++. .-.||++ ||=.|+=|+.-+|++.++++++..+-.+ + ... +.+
T Consensus 243 ~~v~aDplaL~L--L~pPGe-----~GADIvvG~~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~r 315 (450)
T COG0403 243 VIVAADPLALGL--LKPPGE-----FGADIVVGSAQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFR 315 (450)
T ss_pred EEEEechhHhhc--cCCccc-----cCCceEEecCcccCCCcCCCCcceeeeeEhHhHhhcCCCceeeeeecCCCCchhh
Confidence 885 4332222 111111 2357775 3333332335688888888886654210 0 000 000
Q ss_pred -------------CcCCCCCCcHH--HHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHhHhhcc-CCCceeeEeeeeeE
Q 013204 306 -------------SHGFTYSGHPV--SCAVAIEALKIYKER---NIVEQVNKIAPKFQDGVKAFS-DSPIIGEIRGTGLI 366 (447)
Q Consensus 306 -------------~~~~t~~~~~~--~~~aa~a~l~~~~~~---~~~~~~~~~~~~l~~~L~~l~-~~~~~~~~~~~g~~ 366 (447)
-..+..+.+.. +.+++.. .-++..+ ++.+++.++..++.+.|++.. ....+ ....|
T Consensus 316 LaLQTREQHIRReKATSNICTnQaLlA~~As~y-~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~----~~~fF 390 (450)
T COG0403 316 LALQTREQHIRREKATSNICTNQALLALAASMY-AVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELV----FDHFF 390 (450)
T ss_pred hhHHHHHHHHhhhccchhhhHHHHHHHHHHHHH-HHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEec----cccce
Confidence 01112222222 2221111 1122233 345677778888888888651 11111 11222
Q ss_pred EEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 367 LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 367 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
--+.+.-+. .....+..+....|+-++... +.+-++..-..|+++|+.+++.+....
T Consensus 391 dt~~v~~~~----------~~~~~l~~~~~~~G~~L~~~~~~~~~ia~tEt~t~~~i~~l~~~~~~~~ 448 (450)
T COG0403 391 DTFTVRVPE----------EVAEALLAAAIAGGINLRRVDADTVLIALTETTTKEDIDALVAAFGGVN 448 (450)
T ss_pred eeEEEecch----------hHHHHHHHHHHhcCCceeeecCCceEEEeecccCHHHHHHHHHHHhhhc
Confidence 222222111 024446666677788877654 457778778889999999999987653
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00028 Score=65.19 Aligned_cols=281 Identities=13% Similarity=0.113 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHhc---Cc--CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcc
Q 013204 78 PSLDLAKELLEMF---TA--SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPA 152 (447)
Q Consensus 78 ~~~~l~~~l~~~~---~~--~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~ 152 (447)
...+|++.+.+++ ++ .+-..++|++|.++...+||-.+..... .....-+|+.-.|-|..+....--... ..
T Consensus 44 ~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~--~~~~p~~VVa~aPYY~~Y~~qt~~f~s-~~ 120 (363)
T PF04864_consen 44 ISPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNAS--PSSSPASVVAAAPYYSSYPEQTDFFDS-RL 120 (363)
T ss_dssp S-HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT---TTSSSEEEEE-SS--CHHHHHCCCT-B-TT
T ss_pred ccHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCC--CCCCCceeEecCCCccchHHHHHhccc-cC
Confidence 3456666665554 22 2445899999999999999886532211 223457888888888555332211110 01
Q ss_pred ccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHH
Q 013204 153 LHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQA 232 (447)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~ 232 (447)
++ |..+. .. + .....+.+..=++..|.|+.|...- .
T Consensus 121 y~------------------w~Gda--~~---~-----------~~~~~~~~~IElVTSPNNPDG~lr~----------~ 156 (363)
T PF04864_consen 121 YK------------------WAGDA--SN---F-----------KNSDNPSPYIELVTSPNNPDGQLRE----------A 156 (363)
T ss_dssp EE------------------EEEEC--CC---G-----------TT-S-CCGEEEEEESS-TTT----------------
T ss_pred cc------------------ccccH--Hh---h-----------ccCCCCCCeEEEEeCCCCCcccccc----------h
Confidence 10 00000 00 0 0011134566678888888774321 1
Q ss_pred HHHhcCCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCcccceeEEEeCh-hHHHHhhhccCCCCccCcCC
Q 013204 233 VVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSAYMPIGAILVSP-EVSEVIHSQSNTLGSFSHGF 309 (447)
Q Consensus 233 l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~ 309 (447)
+++.-+..+|.|=+|=---.+. +. ....-|++ |+||.-|-++.|+|+.+.+. ++.+.+. .+...+
T Consensus 157 V~~g~~~k~I~D~AYYWPhyTp----I~-~~aD~DiMLFT~SK~TGHAGSR~GWAlVKD~~Va~kM~-------~y~~ln 224 (363)
T PF04864_consen 157 VLNGSSGKVIHDLAYYWPHYTP----IT-APADHDIMLFTLSKLTGHAGSRFGWALVKDEEVAKKMT-------KYMELN 224 (363)
T ss_dssp SSTTTEEEEEEE-TT-STTTS--------S-B--SEEEEEHHHHCS-GGG-EEEEEES-HHHHHHHH-------HHHHHH
T ss_pred hcCCCCcceeeeeeeecccccc----cC-CCCCCceEEEEEecccCccccccceeeecCHHHHHHHH-------HHHHHh
Confidence 3355566779996653111110 10 11234666 67896665448999988865 4666554 334445
Q ss_pred CCCCcHHHHHHHHHHHHHHhh----h----cH----HHHHHHHHHHHHHhHhhcc-----CCC-----cee-eEeeeeeE
Q 013204 310 TYSGHPVSCAVAIEALKIYKE----R----NI----VEQVNKIAPKFQDGVKAFS-----DSP-----IIG-EIRGTGLI 366 (447)
Q Consensus 310 t~~~~~~~~~aa~a~l~~~~~----~----~~----~~~~~~~~~~l~~~L~~l~-----~~~-----~~~-~~~~~g~~ 366 (447)
|.+.+-=++..++..|+.+.+ + ++ .+.++++.++|++.+..-. +.+ ... .......+
T Consensus 225 TiGvS~dsQLRa~kiLk~v~~~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPaf 304 (363)
T PF04864_consen 225 TIGVSRDSQLRALKILKVVLDGYGTEKGTEDIFHFGYSTMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAF 304 (363)
T ss_dssp CSS--HHHHHHHHHHHHHHHHHCCHHTTTTSHHHHHHHHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE---SE
T ss_pred cccCcHHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHHHHhcCceecCcCCchhccccccccCCCCCe
Confidence 666666667767777765432 1 22 2456666666766664321 110 111 12334556
Q ss_pred EEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC------CEEEEecCCCCCHHHHHHHHHHHHH
Q 013204 367 LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG------DNIMMSPPFIMSPEEVDELISKYGK 431 (447)
Q Consensus 367 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g------~~iR~~~~~~~t~e~i~~~~~~l~~ 431 (447)
.++.+..+.. ..+...|++.||+.+.+. ..+|++ +..++++.+.++++|.+
T Consensus 305 AWlkCe~eed------------~DC~~~l~~~~I~tr~G~~fga~~ryVRlS--ml~~~d~Fd~l~~rL~~ 361 (363)
T PF04864_consen 305 AWLKCEREED------------EDCYAVLREAKIITRSGVLFGADSRYVRLS--MLKRDDDFDQLLERLSK 361 (363)
T ss_dssp EEEEESSCGG------------SSHHHHHHCTTEEEEEGGGGTS-TTEEEEE--SSS-HHHHHHHHHHHHC
T ss_pred EEEecCCccc------------ccHHHHHHhCCcccCCCCccCCCCCeEEEe--ccCCHHHHHHHHHHHHh
Confidence 6777764321 125667888899888652 579999 89999999999999875
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00019 Score=68.07 Aligned_cols=222 Identities=15% Similarity=0.151 Sum_probs=104.3
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccccc---ccCCCCC
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGC---DKYSIKP 266 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~---~~~~~~~ 266 (447)
.+.+|+.+.+.+++.+.+|+..+.... | +.| +-+++|.++|++||++.++--+|+ +.-.-....+ ...|. .
T Consensus 141 ~~~ie~~i~~~G~~~iLcvltttscfa-p-r~~--D~i~~IakiC~~~~IPhlvNnAYg-vQ~~~~~~~i~~a~~~GR-v 214 (389)
T PF05889_consen 141 LEAIEAKIEELGADNILCVLTTTSCFA-P-RLP--DDIEEIAKICKEYDIPHLVNNAYG-VQSSKCMHLIQQAWRVGR-V 214 (389)
T ss_dssp HHHHHHHHHHHCGGGEEEEEEESSTTT-T-B------HHHHHHHHHHHT--EEEEGTTT-TT-HHHHHHHHHHHHHST-C
T ss_pred HHHHHHHHHHhCCCCeEEEEEecCccC-C-CCC--ccHHHHHHHHHHcCCceEEccchh-hhHHHHHHHHHHHHhcCC-c
Confidence 367788887776666766665554333 2 333 349999999999999999998885 5100000000 00121 2
Q ss_pred Cee--eecccCCCcccceeEEEe-ChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh---hcHHHHHHHH
Q 013204 267 DLV--SFAKALSSAYMPIGAILV-SPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE---RNIVEQVNKI 340 (447)
Q Consensus 267 d~v--~~sK~l~gg~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~ 340 (447)
|++ ...|-|--| .+-+.+.. .+..+..+... .++. .+..+.+-. ...|..+.. ..++....+.
T Consensus 215 da~vqS~dkNF~VP-vGgai~As~~~~~i~~vs~~--YpGR-----as~sp~ld~---~itLl~LG~~g~~~ll~~r~~~ 283 (389)
T PF05889_consen 215 DAFVQSTDKNFMVP-VGGAIMASFDPSGILAVSKE--YPGR-----ASASPSLDL---FITLLSLGCTGYGALLKERKAS 283 (389)
T ss_dssp SEEEEEHHHHHCEE-SSHEEEEESSHHHHHHHHHT--SHSH-----BTSHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeecCCCEEec-CCCcEEEecCHHHHHHHHHH--hhhh-----hhcccchHH---HHHHHHHhhhHHHHHHHHHHHH
Confidence 332 345633211 11133443 45667766532 1110 111111111 111222221 2233344444
Q ss_pred HHHHHHhHhhc-cCCC-ceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEE----eeC--------
Q 013204 341 APKFQDGVKAF-SDSP-IIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR----VSG-------- 406 (447)
Q Consensus 341 ~~~l~~~L~~l-~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~----~~g-------- 406 (447)
-.+++++|+++ ..+. .+.+.+.....+.+.+..-.... .+....|...|..+||.-. +.+
T Consensus 284 f~~l~erl~~~aee~~e~ll~~p~N~is~a~tl~~l~~~~------~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~ 357 (389)
T PF05889_consen 284 FPYLKERLKKWAEEVGERLLETPRNHISMAFTLDTLYEIS------QKDGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSS 357 (389)
T ss_dssp HHHHHHHHHHHHHHTTEEBSSSTT-SSEEEEE-TTCCTCC------SSHHHHHHHHHHHTTEESSEEEETSSCEEETTSS
T ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCCeeEEEECccchhhc------cchhhhHHHHHHhCCcccceeeccCCCcccccCC
Confidence 45555555555 2222 11122222223344443211100 0234568888999876521 111
Q ss_pred ----CEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 407 ----DNIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 407 ----~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
..+-+...+..++||||.++++|+++++
T Consensus 358 ~yp~~Ylt~AsaiG~~~eevd~~v~rL~k~i~ 389 (389)
T PF05889_consen 358 NYPCPYLTAASAIGMTREEVDYFVKRLDKIIK 389 (389)
T ss_dssp --SSSEEEEEE-TT--HHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 4566766788999999999999999875
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0017 Score=64.69 Aligned_cols=135 Identities=18% Similarity=0.221 Sum_probs=80.8
Q ss_pred CChHHHHHHHHHHHhcCcCCCC-eEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCC-cc
Q 013204 75 TTKPSLDLAKELLEMFTASKMA-KVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGL-PA 152 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~-~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~-~~ 152 (447)
+.....+..+..++.+ +.+ .-+.+||-|.||..++..+. + ....|.++.+.|-+...++..+|. |.
T Consensus 68 p~G~i~eAqe~aA~~f---gAd~tyFvvNGTS~ank~vi~a~~--------~-~GD~VLvdRN~HKSi~~glilaGa~Pv 135 (557)
T COG1982 68 PEGPIKEAQELAARVF---GADHTYFVVNGTSTANKAVINAVL--------T-PGDKVLVDRNCHKSIHHGLILAGATPV 135 (557)
T ss_pred CCccHHHHHHHHHHHh---CCCceEEEECCccHHHHHHHHhhc--------C-CCCEEEecCCccHHHHHHHHHcCCceE
Confidence 4445666666666665 334 44555666777777777653 2 344556688999987666766664 55
Q ss_pred ccCCCCCC-CCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHH
Q 013204 153 LHQKFDLP-APFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 231 (447)
Q Consensus 153 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~ 231 (447)
|..+-..+ ......++ .+.+++.+.+.......+|+..|.+ .|...- +++|.
T Consensus 136 yl~p~~np~~gi~ggI~---------------------~~~~~~~l~~~~~~~k~~vitnpTY--dGv~~n----~~~i~ 188 (557)
T COG1982 136 YLEPSRNPLYGIIGGIP---------------------LETFKEALLAHPDAEKLAVITNPTY--DGVCYN----LRKIV 188 (557)
T ss_pred EecCCCCccccccCCCC---------------------HHHHHHHHHhChhhheeEEEecCcc--ceEeec----HHHHH
Confidence 44322211 11111111 2556665544322226677777754 243333 89999
Q ss_pred HHHHhcCCEEEEehhhc
Q 013204 232 AVVKKYDILFIADEVIC 248 (447)
Q Consensus 232 ~l~~~~g~~li~DEv~~ 248 (447)
+.+..+++++.+||.+-
T Consensus 189 ~~~~~~~a~v~~deah~ 205 (557)
T COG1982 189 ELLHHYGAWVLYDEAHP 205 (557)
T ss_pred HHHhhcCceEEhhhcCc
Confidence 99999999999999984
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.014 Score=56.06 Aligned_cols=295 Identities=12% Similarity=0.075 Sum_probs=139.9
Q ss_pred EEEeCChhhHHHHHHHHHHHHHHhcCCCC----------cceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceec
Q 013204 98 VFFTNSGSEANDTQVKLVWYYNNALGRPN----------KKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHT 167 (447)
Q Consensus 98 v~~~~sGseA~~~Al~~~~~~~~~~~~~~----------~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (447)
-+.-.|++|++..||-.+|.....+-+.+ .+-|..++.-.|.+..-+....+... ..+
T Consensus 142 GviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~SDqahssveka~~i~~Vkl------------R~l 209 (511)
T KOG0628|consen 142 GVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAYCSDQAHSSVEKACLIAGVKL------------RAL 209 (511)
T ss_pred ceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEecCcccchHHHhHhhcceeE------------EEe
Confidence 34556799999999998875443322221 12344455555665433333333221 111
Q ss_pred CCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhC-CCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehh
Q 013204 168 DCPHYWRYAHPGETEEEYSTRLANNLEDLILKEG-PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEV 246 (447)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~-~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv 246 (447)
+....+ ..+ .+.|++++.+.. ..-+..+++-.+-.++ .- .-+.|.+|..+|+++|++|++|.+
T Consensus 210 ~td~n~--~mr-----------~~~L~~AIe~D~arGlIPf~v~at~GTT~-~c--a~D~l~elg~Vc~~~glWLHVDAA 273 (511)
T KOG0628|consen 210 PTDENF--GMR-----------GDTLRKAIEEDIARGLIPFFVCATLGTTS-SC--AFDELEELGPVCREEGLWLHVDAA 273 (511)
T ss_pred ecccCc--CCC-----------HHHHHHHHHHHHhCCCccEEEEEeecCcc-cc--ccccHHHhcchhhhcCEEEEeehh
Confidence 111000 000 155666655421 2335555555544333 22 235599999999999999999999
Q ss_pred hcCCCccccccccccCCCC-CCeee--ecccC-----------CCcccceeEEE-eChhHHHHhhhccCCCCccCcCCCC
Q 013204 247 ICAFGRLGTMFGCDKYSIK-PDLVS--FAKAL-----------SSAYMPIGAIL-VSPEVSEVIHSQSNTLGSFSHGFTY 311 (447)
Q Consensus 247 ~~g~g~~g~~~~~~~~~~~-~d~v~--~sK~l-----------~gg~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~t~ 311 (447)
|+|-...-+.+-.-.-|+. .|-.. .+|.+ -.| ..+.... ..+...+.-... . .+-...
T Consensus 274 YAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~-~~~~~~~~vdp~yL~h~~~~-----~-~~Dyrh 346 (511)
T KOG0628|consen 274 YAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDG-TKLSRAFNVDPLYLKHAYQG-----S-APDYRH 346 (511)
T ss_pred hccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecC-ceeeeeeecChHhhcchhhc-----c-CCCccc
Confidence 9864222111100111221 33221 23322 122 1222222 223222211111 0 111122
Q ss_pred CCcHHH----HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc-cCCCceee-E-eeeeeEEEEEeecCCCCCCCCCCC
Q 013204 312 SGHPVS----CAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGE-I-RGTGLILGTEFADNKSPNEPFPPE 384 (447)
Q Consensus 312 ~~~~~~----~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~-~-~~~g~~~~i~~~~~~~~~~~~~~~ 384 (447)
+.-|++ ..-.+-.++.+.-+++.+++++-.+. .+...++ .+-+...- . +-.|+ +.+.+...+
T Consensus 347 wqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~L-a~~fe~lv~~d~~FE~~~~~~lgL-vcFRlk~~N--------- 415 (511)
T KOG0628|consen 347 WQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHVRL-AKEFETLVRADPRFEIVNKRILGL-VCFRLKGDN--------- 415 (511)
T ss_pred cccccccchhhHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHhhcCCcceeecccccce-eEEeecCCc---------
Confidence 333332 22233445555557777777764433 3333333 22221111 1 12222 233333322
Q ss_pred cchHHHHHHHHHHcC-ceEEee---CC-EEEEecCC-CCCHHHHHHHHHHHHHHHHHHHHH
Q 013204 385 WGIGAYFGAQCEKHG-MLVRVS---GD-NIMMSPPF-IMSPEEVDELISKYGKALKATEER 439 (447)
Q Consensus 385 ~~~~~~~~~~l~~~G-i~~~~~---g~-~iR~~~~~-~~t~e~i~~~~~~l~~~l~~~~~~ 439 (447)
...+.+.+++-..| |...+. |. .||++... .+++++|++.-+.|.+...++.++
T Consensus 416 -~~ne~Ll~~in~~g~i~l~~~~l~gk~vlRf~V~s~~t~~~di~~a~~~I~~~a~~l~~~ 475 (511)
T KOG0628|consen 416 -EINEALLNRLNSSGRIHLVPASLHGKFVLRFAVCSPLTNESDIDEAWKIIFEAADELFEA 475 (511)
T ss_pred -HHHHHHHHHHHhcCcEEEEEeeecceEEEEEEecCCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 13555666666554 555554 33 38988653 357889999999999888876544
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00097 Score=62.26 Aligned_cols=212 Identities=11% Similarity=0.086 Sum_probs=110.2
Q ss_pred CCHHHHHHHHHH-HhcCCcc-cccCcCCChHHHHHHHHHHHhcCcCCCCeEEEe---CChhhHHHHHHHHHHHHHHhcCC
Q 013204 50 SEPRLVAAATAQ-LNTLPFY-HSFWNRTTKPSLDLAKELLEMFTASKMAKVFFT---NSGSEANDTQVKLVWYYNNALGR 124 (447)
Q Consensus 50 ~~p~v~~a~~~~-~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~---~sGseA~~~Al~~~~~~~~~~~~ 124 (447)
|..+|++|+++. +....+. ++..+........|++-.++.| +.+..++- .|||.|+..||...+
T Consensus 25 Nq~KVL~Af~~~~vs~~hf~~tTGYGY~D~GRd~le~iyA~vf---gaE~ALVRpq~vSGTHAi~~~Lfg~L-------- 93 (403)
T PF06838_consen 25 NQLKVLKAFQENRVSDSHFAGTTGYGYDDIGRDKLERIYADVF---GAEDALVRPQFVSGTHAIALALFGVL-------- 93 (403)
T ss_dssp HHHHHHHHHHHTT--GGGCS---TT-TT-HHHHHHHHHHHHHC---T-SEEEEETTS-SHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHcCCChhhcCCCCcCCCCCccHHHHHHHHHHHh---CchhhhhcccccchHHHHHHHHHhcC--------
Confidence 345677777663 2221111 1222334445556667777776 55566665 499999999999664
Q ss_pred CCcceEEEEcCCCccchhhhhcccCC-ccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCC
Q 013204 125 PNKKKFIARQKSYHGSTLIAASLSGL-PALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPE 203 (447)
Q Consensus 125 ~~~~~vi~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~ 203 (447)
.+.++.+..++.=--.....+...+. +.-.+.+++.+ ..+++.+... .+.+.+++.+. +
T Consensus 94 rpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~Y---~~v~L~~dg~-------------~D~~~i~~~~~----~ 153 (403)
T PF06838_consen 94 RPGDELLSITGKPYDTLEEVIGIRGNGPGSLKEFGIKY---REVPLTEDGT-------------IDWEAIKKALK----P 153 (403)
T ss_dssp -TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-EE---EE--B-TTSS-------------B-HHHHHHHHH----T
T ss_pred CCCCeEEEcCCCchhhHHHHhCCCCCCCCChHHhCcee---EEEeecCCCC-------------cCHHHHHHhhc----c
Confidence 33477877765433333333333332 11111222211 2233222111 11366777776 4
Q ss_pred cEEEEEEccccCCCCCccCChhHHHHHHHHHHhc--CCEEEEehhhcCCCccccccccccCCCCCCeeeec--ccCCCcc
Q 013204 204 TIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKY--DILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAY 279 (447)
Q Consensus 204 ~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~--g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l~gg~ 279 (447)
++++|.+--+.+-.--...+-+.++++.+++|+. ++++.+|..|..|... .+-..+-.|++.-| |-.|||.
T Consensus 154 ~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~-----~EP~~vGADl~aGSLIKNpGGgi 228 (403)
T PF06838_consen 154 NTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVET-----QEPTEVGADLMAGSLIKNPGGGI 228 (403)
T ss_dssp TEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSS-----S-GGGGT-SEEEEETTSGGGTTT
T ss_pred CceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccc-----cCccccchhheeccceeCCCCCc
Confidence 6778887666554432344456777777777764 7899999999877433 22234557988654 8888876
Q ss_pred ccee-EEEeChhHHHHhhh
Q 013204 280 MPIG-AILVSPEVSEVIHS 297 (447)
Q Consensus 280 ~~~g-~~~~~~~~~~~~~~ 297 (447)
.|.| ++++++++++....
T Consensus 229 AptGGYIaGr~~lVe~~a~ 247 (403)
T PF06838_consen 229 APTGGYIAGRKDLVERAAY 247 (403)
T ss_dssp -SS-EEEEESHHHHHHHHH
T ss_pred cCcCCEEechHHHHHHHHh
Confidence 6665 67889999887654
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.01 Score=55.47 Aligned_cols=202 Identities=17% Similarity=0.132 Sum_probs=117.6
Q ss_pred EEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec--ccCCCcccce
Q 013204 205 IAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMPI 282 (447)
Q Consensus 205 ~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l~gg~~~~ 282 (447)
.+-|...+.....|...+...+. .. +.++++|-.-.-++| ..-+. +-|++.+| |-+|+. ++
T Consensus 145 ~ayv~~~~NeTi~Gv~v~~~p~~------~~--~~~~v~D~SS~ilsr---~iDvs----k~dviyagaQKnlGpa--Gl 207 (365)
T COG1932 145 DAYVHFCWNETISGVEVPELPDI------GS--DGLLVADASSAILSR---PIDVS----KYDVIYAGAQKNLGPA--GL 207 (365)
T ss_pred ccEEEEecCCcccceEccCCCCC------CC--CceEEEecccHHhcC---CCChh----HcceEEEehhhccCcc--ce
Confidence 44466667666667665532111 11 278888954332211 11121 24777776 888874 58
Q ss_pred eEEEeChhHHHHhhhcc--C---CCCccCcCCCCCCcHHH-HHHHHHHHHHHhhhc----HHHHHHHHHHHHHHhHhhcc
Q 013204 283 GAILVSPEVSEVIHSQS--N---TLGSFSHGFTYSGHPVS-CAVAIEALKIYKERN----IVEQVNKIAPKFQDGVKAFS 352 (447)
Q Consensus 283 g~~~~~~~~~~~~~~~~--~---~~~~~~~~~t~~~~~~~-~~aa~a~l~~~~~~~----~~~~~~~~~~~l~~~L~~l~ 352 (447)
+.++.+++++++..... . ........+++..+|+- .....-+++.++..+ +.++.++..+.|.+.+++-.
T Consensus 208 tvvIvr~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~s~ 287 (365)
T COG1932 208 TVVIVRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKSD 287 (365)
T ss_pred EEEEEcHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999988875421 0 00012344566655543 333445677776643 44555556666666665532
Q ss_pred CCC-ceeeEeeeeeE-EEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC---CEEEEecCCCCCHHHHHHHHH
Q 013204 353 DSP-IIGEIRGTGLI-LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG---DNIMMSPPFIMSPEEVDELIS 427 (447)
Q Consensus 353 ~~~-~~~~~~~~g~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g---~~iR~~~~~~~t~e~i~~~~~ 427 (447)
-+. .+.. ..++.+ +.+.+.+.. +...|...+.++|++.--+. +.+|.+.--.++.|+++.+++
T Consensus 288 fy~~~v~~-~~RS~mnV~f~~~~~~-----------ld~~fv~eae~~gl~~lkGhr~vgGmRasiynA~~~e~veaL~~ 355 (365)
T COG1932 288 FYRNLVAK-ANRSRMNVTFTLVDAE-----------LDKGFVAEAEAAGLIYLKGHRSVGGLRASIYNAVPLEDVEALTD 355 (365)
T ss_pred ccccccch-hhccceeEEEEcCcHH-----------HHHHHHHHHHHcCCceeccccCCCceeeeeecCCCHHHHHHHHH
Confidence 121 1111 223333 234444322 45668888888888765432 449999888889999999998
Q ss_pred HHHHHHHH
Q 013204 428 KYGKALKA 435 (447)
Q Consensus 428 ~l~~~l~~ 435 (447)
-++.+.+.
T Consensus 356 fm~~f~~~ 363 (365)
T COG1932 356 FMDWFEET 363 (365)
T ss_pred HHHHHHHh
Confidence 88877654
|
|
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0097 Score=55.39 Aligned_cols=218 Identities=14% Similarity=0.085 Sum_probs=110.1
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhh-cCCCcccc-ccccccCCCCCC
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVI-CAFGRLGT-MFGCDKYSIKPD 267 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~-~g~g~~g~-~~~~~~~~~~~d 267 (447)
.+.||+......| .++|+-.. -.+..=..++++++|.+.|++|.+|=+| +|+...|. +..+++ .|
T Consensus 178 YD~Le~~A~~frP---k~iiaG~S------aY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey----~D 244 (477)
T KOG2467|consen 178 YDKLEKTATLFRP---KLIIAGTS------AYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEY----CD 244 (477)
T ss_pred hHHHHHHHHhcCC---cEEEeccc------cchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccc----cc
Confidence 3667766554334 34444221 1111123789999999999999999876 45533332 222333 57
Q ss_pred eeee--cccCCCcccceeEEEeChhHHH-----------Hhhhc-cCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhc-
Q 013204 268 LVSF--AKALSSAYMPIGAILVSPEVSE-----------VIHSQ-SNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERN- 332 (447)
Q Consensus 268 ~v~~--sK~l~gg~~~~g~~~~~~~~~~-----------~~~~~-~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~- 332 (447)
+|+. -|+|-| .+.|.+..++.+.. .+... +...-+..++++.. -.+++...+|+....++
T Consensus 245 iVTTTTHKsLRG--PRg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHN---htIaalAvALkQa~tpef 319 (477)
T KOG2467|consen 245 IVTTTTHKSLRG--PRGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHN---HTIAALAVALKQAMTPEF 319 (477)
T ss_pred eeeccccccccC--CcceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCc---chHHHHHHHHHhhCCHHH
Confidence 7764 489988 47777776664321 11110 00111112232322 22333333455555555
Q ss_pred --HHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHH---HHcCceEEe---
Q 013204 333 --IVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQC---EKHGMLVRV--- 404 (447)
Q Consensus 333 --~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~Gi~~~~--- 404 (447)
...++.++.+.|.+.|.++ ++.++..-.- ..++.+++....-... ..+.+.+.+ .++.-+..-
T Consensus 320 k~Yq~qV~~Nakala~~l~~~-Gy~lvtgGTD-nHlvLvDLr~~G~dGa-------rvE~vle~~~I~~NKNtvpGD~Sa 390 (477)
T KOG2467|consen 320 KEYQKQVLKNAKALASALISR-GYKLVTGGTD-NHLVLVDLRPKGVDGA-------RVEKVLELCHIALNKNTVPGDKSA 390 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CceEecCCcc-ceEEEEeccccCCchH-------HHHHHHHHhhhhhcCCcCCCCccc
Confidence 3456677777787777765 4443322111 2244556654331110 111122211 122211110
Q ss_pred -eCCEEEEecCCC----CCHHHHHHHHHHHHHHHH
Q 013204 405 -SGDNIMMSPPFI----MSPEEVDELISKYGKALK 434 (447)
Q Consensus 405 -~g~~iR~~~~~~----~t~e~i~~~~~~l~~~l~ 434 (447)
..+.||+..|.. ..++|+++..+-|.++++
T Consensus 391 l~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av~ 425 (477)
T KOG2467|consen 391 LSPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAVK 425 (477)
T ss_pred cCCCceeccchhhcccCccHHHHHHHHHHHHHHHH
Confidence 125699987754 357888888888877764
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.064 Score=57.33 Aligned_cols=200 Identities=11% Similarity=0.057 Sum_probs=108.3
Q ss_pred CcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEE--ehhhcCCCccccccccccCCCCCCeee-----ecccC
Q 013204 203 ETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIA--DEVICAFGRLGTMFGCDKYSIKPDLVS-----FAKAL 275 (447)
Q Consensus 203 ~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~--DEv~~g~g~~g~~~~~~~~~~~~d~v~-----~sK~l 275 (447)
+++++|++.-.+..| .+-. +++|.+++++.|+++|+ |=. + ++..-.++ ..-.||++ ||=.|
T Consensus 207 ~~~~~v~vq~P~~~G-~i~d----~~~i~~~~h~~gal~~~~~d~l-a-L~ll~~Pg-----e~GADI~vG~~Q~fGvp~ 274 (954)
T PRK12566 207 HAVFGALLQYPDTHG-EIRD----LRPLIDQLHGQQALACVAADLL-S-LLVLTPPG-----ELGADVVLGSTQRFGVPM 274 (954)
T ss_pred CCEEEEEEECCCCce-EEcc----HHHHHHHHHHcCCEEEEEeCHH-H-HhCCCChh-----hcCCcEEeeCCCcCCCCC
Confidence 468888886655444 4422 89999999999998774 222 1 11111111 12368774 33345
Q ss_pred CCcccceeEEEeChhHHHHhhhc-----cCCCC--cc--------------CcCCCCCCcHHHHHHHHHHH-HHHhhhcH
Q 013204 276 SSAYMPIGAILVSPEVSEVIHSQ-----SNTLG--SF--------------SHGFTYSGHPVSCAVAIEAL-KIYKERNI 333 (447)
Q Consensus 276 ~gg~~~~g~~~~~~~~~~~~~~~-----~~~~~--~~--------------~~~~t~~~~~~~~~aa~a~l-~~~~~~~~ 333 (447)
+.|+.-+|++.++++++..+-.. ....+ .+ -..+..+.+..-++.+.+.. -++..+++
T Consensus 275 ~~GGP~ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~~~Gp~Gl 354 (954)
T PRK12566 275 GYGGPHAAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGFYAVYHGPEGL 354 (954)
T ss_pred CCCCCCeeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhChHHH
Confidence 55556788888888877655221 00000 00 00111122222111111111 12223333
Q ss_pred ---HHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEE
Q 013204 334 ---VEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNI 409 (447)
Q Consensus 334 ---~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~i 409 (447)
.+++..+..++.+.|.+. ++..... ..|-.+.+.-.. ....+.++.++.|+-++..+ +.+
T Consensus 355 ~~ia~~~~~~a~~l~~~l~~~-g~~~~~~----~fF~~~~v~~~~-----------~~~~~~~~a~~~~~n~r~~~~~~~ 418 (954)
T PRK12566 355 KRIAQRVHRLTAILAAGLEAK-GIKRLNR----HFFDTLTLEVGG-----------AQAAIIESAEAARINLRILGRGRL 418 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CCccccC----CccceEEEEccC-----------CHHHHHHHHHHCCCeeEEeCCCeE
Confidence 345666777888888774 3322211 112122222110 13457788889999988664 568
Q ss_pred EEecCCCCCHHHHHHHHHHHH
Q 013204 410 MMSPPFIMSPEEVDELISKYG 430 (447)
Q Consensus 410 R~~~~~~~t~e~i~~~~~~l~ 430 (447)
.++.--.+|.+|++.+++.+.
T Consensus 419 ~~s~de~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 419 GVSLDETCDEATVARLFDIFL 439 (954)
T ss_pred EEEeCCCCCHHHHHHHHHHhc
Confidence 888888899999999999984
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.016 Score=52.85 Aligned_cols=196 Identities=16% Similarity=0.244 Sum_probs=106.4
Q ss_pred cCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccc----cccccC---CCCCCee--eecccCCCcccceeE
Q 013204 214 IGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTM----FGCDKY---SIKPDLV--SFAKALSSAYMPIGA 284 (447)
Q Consensus 214 ~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~----~~~~~~---~~~~d~v--~~sK~l~gg~~~~g~ 284 (447)
.+.+| +-|+.+-...|.+.-++.+.+..+|-+|.|| ..|.. |+..++ | .+=++ .|+|-+|-=.-++|.
T Consensus 188 hNPTG-mDPT~EQW~qia~vik~k~lf~fFDiAYQGf-ASGD~~~DawAiR~fV~~g-~e~fv~QSFaKNfGlYneRvGn 264 (410)
T KOG1412|consen 188 HNPTG-MDPTREQWKQIADVIKSKNLFPFFDIAYQGF-ASGDLDADAWAIRYFVEQG-FELFVCQSFAKNFGLYNERVGN 264 (410)
T ss_pred cCCCC-CCCCHHHHHHHHHHHHhcCceeeeehhhccc-ccCCccccHHHHHHHHhcC-CeEEEEhhhhhhcccccccccc
Confidence 44444 7889999999999999999999999999999 56642 333222 2 12233 378966531146664
Q ss_pred ---EEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcH-----------HHHHHHHHHHHHHhHhh
Q 013204 285 ---ILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNI-----------VEQVNKIAPKFQDGVKA 350 (447)
Q Consensus 285 ---~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~-----------~~~~~~~~~~l~~~L~~ 350 (447)
++-++..+..+... . ....-.+++ ||.+..|-+ +-+++..+++ -.++++++..|++.|..
T Consensus 265 ltvv~~n~a~i~~v~SQ---l-~lviR~~~S-NPPAyGArI-V~kvL~tP~lre~W~~sik~MssRI~~MR~aLrd~L~a 338 (410)
T KOG1412|consen 265 LTVVVNNPAVIAGVKSQ---L-TLVIRSNWS-NPPAYGARI-VHKVLSTPELREQWIQSIKTMSSRIKKMRTALRDHLVA 338 (410)
T ss_pred eEEEecChhHHHHHHHH---H-HHHHhhccC-CCcchhhHH-HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44456666555431 1 111112333 343333222 2233333322 24555666667777777
Q ss_pred ccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEeeCCEEEEecCCCCCHHHHHHHHHHH
Q 013204 351 FSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVSGDNIMMSPPFIMSPEEVDELISKY 429 (447)
Q Consensus 351 l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l 429 (447)
|..-+-...+..+-.| +.+..- ...-.+.|. .+.|+....| +|-++ ..+...++...+++
T Consensus 339 L~TPGtWDHI~~QiGM--FSyTGL-------------tp~qV~~li~~h~vyLl~~G-RInis---GLN~~NveyVAkAI 399 (410)
T KOG1412|consen 339 LKTPGTWDHITQQIGM--FSYTGL-------------TPAQVDHLIENHKVYLLSDG-RINIS---GLNMKNVEYVAKAI 399 (410)
T ss_pred cCCCCcHHHHHhhccc--eeecCC-------------CHHHHHHHHHhceEEEecCC-cEeee---ccccccHHHHHHHH
Confidence 6221111111111112 222221 112345555 4566666554 45555 67888899999998
Q ss_pred HHHHHHHH
Q 013204 430 GKALKATE 437 (447)
Q Consensus 430 ~~~l~~~~ 437 (447)
.+++..+.
T Consensus 400 de~Vr~~~ 407 (410)
T KOG1412|consen 400 DETVRAIK 407 (410)
T ss_pred HHHHHhhc
Confidence 88877654
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.076 Score=44.39 Aligned_cols=59 Identities=10% Similarity=0.081 Sum_probs=45.9
Q ss_pred cCCChHHHHHHHHHHHhcC---cCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCcc
Q 013204 73 NRTTKPSLDLAKELLEMFT---ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHG 139 (447)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~---~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg 139 (447)
.+..+....+++.+.+.+. ..++++|++++|+++|++.+++.+. ...+.|++.+|.|+|
T Consensus 92 ~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~--------dpGD~VlVp~P~Y~~ 153 (153)
T PLN02994 92 HGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIA--------DPGDAFLVPTPYYAA 153 (153)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHc--------CCCCEEEEeCCCCCC
Confidence 4456667777777777654 2467899999999999999999774 445889999999975
|
|
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.085 Score=47.04 Aligned_cols=56 Identities=18% Similarity=0.203 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc
Q 013204 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC 248 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~ 248 (447)
+++.+++.+...+++.+-+|......- -+-.++-+++|..+|..|+++-|+..+|.
T Consensus 142 dleav~~~iee~g~dcilci~sttscf----apr~pd~leaiaaica~~diphivnnayg 197 (432)
T KOG3843|consen 142 DLEAVEAIIEELGEDCILCIHSTTSCF----APRSPDNLEAIAAICAAHDIPHIVNNAYG 197 (432)
T ss_pred hHHHHHHHHHHhCCceEEEEeeccccc----CCCCCchHHHHHHHHHccCchhhhccccc
Confidence 357777778877776665555544322 12234569999999999999999988763
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.11 E-value=1.2 Score=40.82 Aligned_cols=185 Identities=13% Similarity=0.079 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHhcCc-CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCc-cccC
Q 013204 78 PSLDLAKELLEMFTA-SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLP-ALHQ 155 (447)
Q Consensus 78 ~~~~l~~~l~~~~~~-~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~-~~~~ 155 (447)
....|.+-.++.|.. ...-|.-| -|||.|+..|+.-.+ ...+..+...++--....-.+...+.. .-.+
T Consensus 66 GRdtLe~vyA~vf~aE~a~VRpq~-isGTHAI~~aLfg~L--------RpgDell~i~G~PYDTLeevIG~rg~~~gSL~ 136 (416)
T COG4100 66 GRDTLERVYAQVFGAEAALVRPQI-ISGTHAIACALFGIL--------RPGDELLYITGSPYDTLEEVIGLRGEGQGSLK 136 (416)
T ss_pred chhHHHHHHHHHhccccceeeeee-ecchhHHHHHHHhcc--------CCCCeEEEecCCcchhHHHHhccCCCCcccHH
Confidence 344566666666632 12223333 379999999998553 334677776654323322222222211 0011
Q ss_pred CCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHH
Q 013204 156 KFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVK 235 (447)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~ 235 (447)
.+++... .++... -+..+.+.+++.+. +++++|.+.-..+-+---..+-+.++++.++.|
T Consensus 137 dfgi~Y~---~v~Lt~-------------~gkiD~~~v~~~i~----~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk 196 (416)
T COG4100 137 DFGIKYK---AVPLTA-------------DGKIDIQAVKTAIS----DRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVK 196 (416)
T ss_pred HhCccee---eccccc-------------CCcccHHHHHHhcC----ccceEEEEEeccCcCCCCcccHHHHHHHHHHHH
Confidence 1222111 111111 11122355555554 567788776655443111223366788888888
Q ss_pred hc--CCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCcccce-eEEEeChhHHHHhh
Q 013204 236 KY--DILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSAYMPI-GAILVSPEVSEVIH 296 (447)
Q Consensus 236 ~~--g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg~~~~-g~~~~~~~~~~~~~ 296 (447)
+- ++++.+|..|..|... .+-..+-.|++. +=|-.|||.... |++.+++++++...
T Consensus 197 ~inpn~ivFVDNCYGEFvE~-----~EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve~~~ 257 (416)
T COG4100 197 EINPNVIVFVDNCYGEFVEE-----KEPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVEAAA 257 (416)
T ss_pred hcCCCEEEEEeccchhhhhc-----cCccccchhhhccceeeCCCCceeeccceeechHHHHHhhc
Confidence 65 5788899988766332 223345578775 447777654433 46778888887753
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.34 E-value=1.8 Score=40.60 Aligned_cols=91 Identities=18% Similarity=0.264 Sum_probs=55.5
Q ss_pred CcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc----ccccC-CCCCCee---eeccc
Q 013204 203 ETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF----GCDKY-SIKPDLV---SFAKA 274 (447)
Q Consensus 203 ~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~----~~~~~-~~~~d~v---~~sK~ 274 (447)
..+-++.....+++| +-|+.+-+++|.++.++.+.+-++|-+|.|| ..|... +...+ ..--++. .|+|-
T Consensus 198 gs~ilLhaCaHNPTG--vDPt~eqw~ki~~~~~~k~~~pffDmAYQGf-aSG~~d~DA~avR~F~~~g~~~~laQSyAKN 274 (427)
T KOG1411|consen 198 GSIILLHACAHNPTG--VDPTKEQWEKISDLIKEKNLLPFFDMAYQGF-ASGDLDKDAQAVRLFVEDGHEILLAQSYAKN 274 (427)
T ss_pred CcEEEeehhhcCCCC--CCccHHHHHHHHHHhhhccccchhhhhhccc-ccCCchhhHHHHHHHHHcCCceEeehhhhhh
Confidence 444333344445555 7889999999999999999999999999999 455321 11111 0011222 47897
Q ss_pred CCCcccceeE---EEeChhHHHHhh
Q 013204 275 LSSAYMPIGA---ILVSPEVSEVIH 296 (447)
Q Consensus 275 l~gg~~~~g~---~~~~~~~~~~~~ 296 (447)
||-=+-++|+ ++-+++....+.
T Consensus 275 MGLYgERvGa~svvc~~ad~A~rV~ 299 (427)
T KOG1411|consen 275 MGLYGERVGALSVVCKDADEAKRVE 299 (427)
T ss_pred cchhhhccceeEEEecCHHHHHHHH
Confidence 7641135554 444556655554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 447 | ||||
| 3nui_A | 478 | Crystal Structure Of Omega-Transferase From Vibrio | 2e-96 | ||
| 4grx_A | 465 | Structure Of An Omega-Aminotransferase From Paracoc | 5e-96 | ||
| 4e3q_A | 473 | Pmp-Bound Form Of Aminotransferase Crystal Structur | 4e-94 | ||
| 4e3r_A | 473 | Plp-Bound Aminotransferase Mutant Crystal Structure | 2e-92 | ||
| 3gju_A | 459 | Crystal Structure Of A Putative Aminotransferase (M | 2e-89 | ||
| 3fcr_A | 459 | Crystal Structure Of Putative Aminotransferase (Yp_ | 2e-84 | ||
| 3hmu_A | 472 | Crystal Structure Of A Class Iii Aminotransferase F | 2e-82 | ||
| 4a6r_A | 459 | Crystal Structure Of The Omega Transaminase From Ch | 2e-78 | ||
| 3i5t_A | 476 | Crystal Structure Of Aminotransferase Prk07036 From | 3e-64 | ||
| 3du4_A | 448 | Crystal Structure Of 7-Keto-8-Aminopelargonic Acid | 1e-60 | ||
| 3dod_A | 448 | Crystal Structure Of Plp Bound 7,8-diaminopelargoni | 1e-60 | ||
| 3n5m_A | 452 | Crystals Structure Of A Bacillus Anthracis Aminotra | 1e-59 | ||
| 3a8u_X | 449 | Crystal Structure Of Omega-Amino Acid:pyruvate Amin | 2e-50 | ||
| 3i4j_A | 430 | Crystal Structure Of Aminotransferase, Class Iii Fr | 4e-43 | ||
| 2eo5_A | 419 | Crystal Structure Of 4-Aminobutyrate Aminotransfera | 2e-41 | ||
| 3lg0_A | 422 | Structure Of Plasmodium Falciparum Ornithine Delta- | 3e-39 | ||
| 2e54_A | 385 | Crystal Structure Of Acetylornithine Aminotransfera | 9e-39 | ||
| 1d7r_A | 433 | Crystal Structure Of The Complex Of 2,2-Dialkylglyc | 2e-38 | ||
| 1dgd_A | 432 | An Alkali Metal Ion Size-Dependent Switch In The Ac | 2e-38 | ||
| 1z3z_A | 431 | The Crystal Structure Of A Dgd Mutant: Q52a Length | 3e-38 | ||
| 2ord_A | 397 | Crystal Structure Of Acetylornithine Aminotransfera | 3e-38 | ||
| 1m0n_A | 433 | Structure Of Dialkylglycine Decarboxylase Complexed | 3e-38 | ||
| 2pb0_A | 420 | Structure Of Biosynthetic N-Acetylornithine Aminotr | 1e-37 | ||
| 1z7d_A | 433 | Ornithine Aminotransferase Py00104 From Plasmodium | 1e-37 | ||
| 2eh6_A | 375 | Crystal Structure Of Acetylornithine Aminotransfera | 7e-37 | ||
| 1szk_A | 426 | The Structure Of Gamma-Aminobutyrate Aminotransfera | 2e-36 | ||
| 1sf2_A | 426 | Structure Of E. Coli Gamma-Aminobutyrate Aminotrans | 2e-36 | ||
| 1szs_A | 426 | The Structure Of Gamma-aminobutyrate Aminotransfera | 5e-36 | ||
| 1szu_A | 426 | The Structure Of Gamma-Aminobutyrate Aminotransfera | 7e-36 | ||
| 4adb_A | 406 | Structural And Functional Study Of Succinyl-ornithi | 1e-35 | ||
| 3ruy_A | 392 | Crystal Structure Of The Ornithine-Oxo Acid Transam | 4e-35 | ||
| 3nx3_A | 395 | Crystal Structure Of Acetylornithine Aminotransfera | 6e-33 | ||
| 1qj3_A | 429 | Crystal Structure Of 7,8-Diaminopelargonic Acid Syn | 1e-32 | ||
| 1s0a_A | 429 | Crystal Structure Of The Y17f Mutant Of 7,8- Diamin | 2e-32 | ||
| 1dty_A | 429 | Crystal Structure Of Adenosylmethionine-8-Amino-7-O | 3e-32 | ||
| 1s08_A | 429 | Crystal Structure Of The D147n Mutant Of 7,8- Diami | 4e-32 | ||
| 1s07_A | 429 | Crystal Structure Of The R253a Mutant Of 7,8-Diamin | 7e-32 | ||
| 1mgv_A | 429 | Crystal Structure Of The R391a Mutant Of 7,8-Diamin | 7e-32 | ||
| 2byj_A | 439 | Ornithine Aminotransferase Mutant Y85i Length = 439 | 1e-31 | ||
| 1s09_A | 429 | Crystal Structure Of The Y144f Mutant Of 7,8- Diami | 1e-31 | ||
| 1s06_A | 429 | Crystal Structure Of The R253k Mutant Of 7,8- Diami | 1e-31 | ||
| 2can_A | 402 | Human Ornithine Aminotransferase Complexed With L-C | 2e-31 | ||
| 1oat_A | 439 | Ornithine Aminotransferase Length = 439 | 3e-31 | ||
| 2byl_A | 439 | Structure Of Ornithine Aminotransferase Triple Muta | 1e-30 | ||
| 1vef_A | 395 | Acetylornithine Aminotransferase From Thermus Therm | 9e-30 | ||
| 3tft_A | 457 | Crystal Structure Of 7,8-Diaminopelargonic Acid Syn | 9e-30 | ||
| 3lv2_A | 462 | Crystal Structure Of Mycobacterium Tuberculosis 7,8 | 8e-29 | ||
| 3bv0_A | 437 | Crystal Structure Of Plp Bound 7,8-Diaminopelargoni | 9e-29 | ||
| 3r4t_A | 467 | Crystal Structure Of 4-Aminobutyrate Aminotransfera | 3e-27 | ||
| 4ffc_A | 453 | Crystal Structure Of A 4-Aminobutyrate Aminotransfe | 1e-26 | ||
| 3oks_A | 451 | Crystal Structure Of 4-Aminobutyrate Transaminase F | 2e-25 | ||
| 4atp_A | 456 | Structure Of Gaba-Transaminase A1r958 From Arthroba | 2e-20 | ||
| 3q8n_A | 453 | Crystal Structure Of 4-Aminobutyrate Transaminase F | 1e-19 | ||
| 3l44_A | 434 | Crystal Structure Of Bacillus Anthracis Heml-1, Glu | 4e-18 | ||
| 3fqa_A | 427 | Gabaculien Complex Of Gabaculine Resistant Gsam Ver | 6e-16 | ||
| 2cfb_A | 411 | Glutamate-1-Semialdehyde 2,1-Aminomutase From Therm | 7e-16 | ||
| 3fq8_A | 427 | M248i Mutant Of Gsam Length = 427 | 1e-15 | ||
| 2gsa_A | 432 | Crystal Structure Of Glutamate-1-Semialdehyde Amino | 1e-15 | ||
| 3fq7_A | 427 | Gabaculine Complex Of Gsam Length = 427 | 3e-15 | ||
| 2hoy_A | 432 | Inter-Subunit Signaling In Gsam Length = 432 | 3e-15 | ||
| 2zuk_A | 439 | The Crystal Structure Of Alpha-Amino-Epsilon-Caprol | 3e-15 | ||
| 3dxw_A | 452 | The Crystal Structure Of Alpha-Amino-Epsilon-Caprol | 5e-15 | ||
| 2epj_A | 434 | Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A | 2e-14 | ||
| 2e7u_A | 424 | Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A | 3e-14 | ||
| 3bs8_A | 438 | Crystal Structure Of Glutamate 1-Semialdehyde Amino | 4e-14 | ||
| 4e77_A | 429 | 2.0a Crystal Structure Of A Glutamate-1-Semialdehyd | 8e-14 | ||
| 3k28_A | 429 | Crystal Structure Of A Glutamate-1-Semialdehyde Ami | 1e-12 | ||
| 2cy8_A | 453 | Crystal Structure Of D-Phenylglycine Aminotransfera | 1e-11 | ||
| 4a0g_A | 831 | Structure Of Bifunctional Dapa Aminotransferase-Dtb | 2e-11 | ||
| 4a0f_A | 831 | Structure Of Selenomethionine Substituted Bifunctio | 7e-11 | ||
| 2cin_A | 449 | Lysine Aminotransferase From M. Tuberculosis In The | 9e-11 | ||
| 2jjf_A | 449 | N328a Mutant Of M. Tuberculosis Rv3290c Length = 44 | 1e-10 | ||
| 2jjh_A | 449 | E243 Mutant Of M. Tuberculosis Rv3290c Length = 449 | 1e-10 | ||
| 2jje_A | 449 | Crystal Structure Of T330s Mutant Of Rv3290c From M | 2e-10 | ||
| 1ohv_A | 472 | 4-aminobutyrate-aminotransferase From Pig Length = | 3e-09 | ||
| 4ao9_A | 454 | Biochemical Properties And Crystal Structure Of A N | 3e-06 | ||
| 2yku_A | 465 | Structural Determinants Of The Beta-Selectivity Of | 6e-06 |
| >pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio Fluvialis Js17 Length = 478 | Back alignment and structure |
|
| >pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus Denitrificans Length = 465 | Back alignment and structure |
|
| >pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From Vibrio Fluvialis Length = 473 | Back alignment and structure |
|
| >pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From Vibrio Fluvialis Length = 473 | Back alignment and structure |
|
| >pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From Silicibacter Pomeroyi Length = 472 | Back alignment and structure |
|
| >pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From Chromobacterium Violaceum In The Apo Form, Crystallised From Polyacrylic Acid Length = 459 | Back alignment and structure |
|
| >pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From Rhodobacter Sphaeroides Kd131 Length = 476 | Back alignment and structure |
|
| >pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound 7,8- Diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448 | Back alignment and structure |
|
| >pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448 | Back alignment and structure |
|
| >pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis Aminotransferase Length = 452 | Back alignment and structure |
|
| >pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate Aminotransferase Length = 449 | Back alignment and structure |
|
| >pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From Deinococcus Radiodurans Length = 430 | Back alignment and structure |
|
| >pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From Sulfolobus Tokodaii Strain7 Length = 419 | Back alignment and structure |
|
| >pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine Delta-Aminotransferase Length = 422 | Back alignment and structure |
|
| >pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Thermotoga Maritima Length = 385 | Back alignment and structure |
|
| >pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine Decarboxylase With 5pa Length = 433 | Back alignment and structure |
|
| >pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active Site Structure Of Dialkylglycine Decarboxylase Length = 432 | Back alignment and structure |
|
| >pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a Length = 431 | Back alignment and structure |
|
| >pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec 2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At 1.40 A Resolution Length = 397 | Back alignment and structure |
|
| >pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With 1- Aminocyclopentanephosphonate Length = 433 | Back alignment and structure |
|
| >pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine Aminotransferase From Salmonella Typhimurium: Studies On Substrate Specificity And Inhibitor Binding Length = 420 | Back alignment and structure |
|
| >pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii Length = 433 | Back alignment and structure |
|
| >pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Aquifex Aeolicus Vf5 Length = 375 | Back alignment and structure |
|
| >pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: E211s Length = 426 | Back alignment and structure |
|
| >pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase Length = 426 | Back alignment and structure |
|
| >pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase Mutant: I50q Length = 426 | Back alignment and structure |
|
| >pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: V241a Length = 426 | Back alignment and structure |
|
| >pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine Transaminase From E. Coli Length = 406 | Back alignment and structure |
|
| >pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase Rocd From Bacillus Anthracis Length = 392 | Back alignment and structure |
|
| >pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Argd) From Campylobacter Jejuni Length = 395 | Back alignment and structure |
|
| >pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase In Complex With 7-Keto-8-Aminopelargonic Acid Length = 429 | Back alignment and structure |
|
| >pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1DTY|A Chain A, Crystal Structure Of Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase With Pyridoxal Phosphate Cofactor. Length = 429 | Back alignment and structure |
|
| >pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i Length = 439 | Back alignment and structure |
|
| >pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline Length = 402 | Back alignment and structure |
|
| >pdb|1OAT|A Chain A, Ornithine Aminotransferase Length = 439 | Back alignment and structure |
|
| >pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i Y55a G320f Length = 439 | Back alignment and structure |
|
| >pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus Hb8 Length = 395 | Back alignment and structure |
|
| >pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase (Bioa) From Mycobacterium Tuberculosis, Pre-Reaction Complex With A 3,6- Dihydropyrid-2-One Heterocycle Inhibitor Length = 457 | Back alignment and structure |
|
| >pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis 7,8-Diaminopelargonic Acid Synthase In Complex With Substrate Analog Sinefungin Length = 462 | Back alignment and structure |
|
| >pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid Synthase In Mycobacterium Tuberculosis Length = 437 | Back alignment and structure |
|
| >pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt From Mycobacterium Marinum Covalently Bound To Pyridoxal Phosphate Length = 467 | Back alignment and structure |
|
| >pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase (Gabt) From Mycobacterium Abscessus Length = 453 | Back alignment and structure |
|
| >pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 451 | Back alignment and structure |
|
| >pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter Aurescens In Complex With Plp Length = 456 | Back alignment and structure |
|
| >pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 453 | Back alignment and structure |
|
| >pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate Semialdehyde Aminotransferase Length = 434 | Back alignment and structure |
|
| >pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version Length = 427 | Back alignment and structure |
|
| >pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermosynechococcus Elongatus Length = 411 | Back alignment and structure |
|
| >pdb|3FQ8|A Chain A, M248i Mutant Of Gsam Length = 427 | Back alignment and structure |
|
| >pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase (Aminotransferase, Wild-Type Form) Length = 432 | Back alignment and structure |
|
| >pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam Length = 427 | Back alignment and structure |
|
| >pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam Length = 432 | Back alignment and structure |
|
| >pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam (Different Binding Mode) Length = 439 | Back alignment and structure |
|
| >pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam Length = 452 | Back alignment and structure |
|
| >pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Aeropyrum Pernix Length = 434 | Back alignment and structure |
|
| >pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermus Thermophilus Hb8 Length = 424 | Back alignment and structure |
|
| >pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde Aminotransferase Complexed With Pyridoxamine-5'-Phosphate From Bacillus Subtilis Length = 438 | Back alignment and structure |
|
| >pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Yersinia Pestis Co92 Length = 429 | Back alignment and structure |
|
| >pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis With Bound Pyridoxal 5'phosphate Length = 429 | Back alignment and structure |
|
| >pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase (D-Phgat) From Pseudomonas Strutzeri St-201 Length = 453 | Back alignment and structure |
|
| >pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana In Its Apo Form. Length = 831 | Back alignment and structure |
|
| >pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional Dapa Aminotransferase-Dethiobiotin Synthetase From Arabidopsis Thaliana In Its Apo Form. Length = 831 | Back alignment and structure |
|
| >pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The Internal Aldimine Form Length = 449 | Back alignment and structure |
|
| >pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c Length = 449 | Back alignment and structure |
|
| >pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c Length = 449 | Back alignment and structure |
|
| >pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M. Tuberculosis Length = 449 | Back alignment and structure |
|
| >pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig Length = 472 | Back alignment and structure |
|
| >pdb|4AO9|A Chain A, Biochemical Properties And Crystal Structure Of A Novel Beta-phenylalanine Aminotransferase From Variovorax Paradoxus Length = 454 | Back alignment and structure |
|
| >pdb|2YKU|A Chain A, Structural Determinants Of The Beta-Selectivity Of A Bacterial Aminotransferase Length = 465 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A {Vibrio fluvialis} Length = 478 | Back alignment and structure |
|---|
Score = 676 bits (1747), Expect = 0.0
Identities = 176/442 (39%), Positives = 267/442 (60%), Gaps = 2/442 (0%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
L FT +V+ EG Y+ DVNG++YLD+ +GLW G L+ AA A
Sbjct: 29 SLYGFTDMPSLHQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKA 88
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
Q P YH+F+ R + ++ L+++L+E+ + +VF+TNSGSEANDT VK++W+ +
Sbjct: 89 QYERFPGYHAFFGRMSDQTVMLSEKLVEV-SPFDSGRVFYTNSGSEANDTMVKMLWFLHA 147
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE 180
A G+P K+K + R +YHG T ++AS++G P + F LP P +H CPHYWRY GE
Sbjct: 148 AEGKPQKRKILTRWNAYHGVTAVSASMTGKPY-NSVFGLPLPGFVHLTCPHYWRYGEEGE 206
Query: 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240
TEE++ RLA LE+ I +EG +TIA F AEPV+GAGGVIPP YF+ + +++KYDI
Sbjct: 207 TEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIP 266
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
I+DEVIC FGR G +GC Y PD + +K L++ + P+GA+++ PE+S+ + +
Sbjct: 267 VISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIE 326
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI 360
+ F HGFT SGHPV CA+A++A+ + + E V ++AP+F++ +K ++ P IGE
Sbjct: 327 AIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEY 386
Query: 361 RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPE 420
RG G + E +K+ PF + C G++ R G ++++ PPFI++
Sbjct: 387 RGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLGQSVVLCPPFILTEA 446
Query: 421 EVDELISKYGKALKATEERVKE 442
++DE+ K KAL V
Sbjct: 447 QMDEMFDKLEKALDKVFAEVAA 468
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* Length = 460 | Back alignment and structure |
|---|
Score = 652 bits (1685), Expect = 0.0
Identities = 179/445 (40%), Positives = 265/445 (59%), Gaps = 6/445 (1%)
Query: 1 MLAPFT--AGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAA 58
P T + ++ EG V+D NG+K +D+ AGL+C +G ++ A
Sbjct: 17 FFHPSTHMGTHARGESPTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAI 76
Query: 59 TAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYY 118
Q L +YH++ T+ S+ LAK +++ M++V+F SGS+AN+T +KL+WYY
Sbjct: 77 ATQAKNLAYYHAYVGHGTEASITLAKMIIDR-APKGMSRVYFGLSGSDANETNIKLIWYY 135
Query: 119 NNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHP 178
NN LGRP KKK I+R + YHGS ++ SL+GL H FDLP VLHT+ P+Y+R
Sbjct: 136 NNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDR 195
Query: 179 GETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYD 238
+EE++S A+ LE++IL EGPETIAAFI EP++G GG++PPPA Y+EK+QAV+KKYD
Sbjct: 196 SMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYD 255
Query: 239 ILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQ 298
+L +ADEV+ FGRLGTMFG D Y IKPDL++ AK L+SAY P+ ++V+ V +V+
Sbjct: 256 VLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQG 315
Query: 299 SNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDG-VKAFSDSPII 357
S+ LGS HG+TYS HP+ A + L++ E ++V + F+ KA +
Sbjct: 316 SDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNV 375
Query: 358 GEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV--SGDNIMMSPPF 415
GE+RG G++ EF +K F IG G++ R GD + +PP
Sbjct: 376 GEVRGDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMPQGDILGFAPPL 435
Query: 416 IMSPEEVDELISKYGKALKATEERV 440
++ E+ D ++SK A+K+ +
Sbjct: 436 CLTREQADIVVSKTADAVKSVFANL 460
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* Length = 459 | Back alignment and structure |
|---|
Score = 651 bits (1683), Expect = 0.0
Identities = 168/444 (37%), Positives = 258/444 (58%), Gaps = 8/444 (1%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
L PFT V+ + EG Y++D G K +D +AGLWC +G AA
Sbjct: 18 HLHPFTDTASLNQAGARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARR 77
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
Q+ LPFY++F+ T ++L+ L E+ T + +VF+TNSGSE+ DT +++V Y +
Sbjct: 78 QMEELPFYNTFFKTTHPAVVELSSLLAEV-TPAGFDRVFYTNSGSESVDTMIRMVRRYWD 136
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE 180
G+P KK I R YHGST+ ASL G+ +H++ DLP P + H + P ++++
Sbjct: 137 VQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHG-KDM 195
Query: 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240
T +E+ A LE+ IL+ G + +AAF+ EP+ GAGGVI PPATY+ +++ + +KYD+L
Sbjct: 196 TPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVL 255
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
+ADEVIC FGR G FG + +PDL + AK LSS Y+PIGA+ V V+E + +
Sbjct: 256 LVADEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAG-- 313
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQV-NKIAPKFQDGVK-AFSDSPIIG 358
G F+HGFTYSGHPV AVA + ++ IV++V + I P Q + FS +
Sbjct: 314 --GDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVD 371
Query: 359 EIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMS 418
++RG G++ NK+ E FP IG ++ +++R GD+I+ +PP +M+
Sbjct: 372 DVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACGDHIVSAPPLVMT 431
Query: 419 PEEVDELISKYGKALKATEERVKE 442
EVDE+++ + L+ E+ +K
Sbjct: 432 RAEVDEMLAVAERCLEEFEQTLKA 455
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} Length = 476 | Back alignment and structure |
|---|
Score = 650 bits (1679), Expect = 0.0
Identities = 137/442 (30%), Positives = 235/442 (53%), Gaps = 5/442 (1%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
+L P + V+ +EG YV+ +G++ +D AG+WC +G +V A
Sbjct: 22 ILLPAQEMAKLGKSAQPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAH 81
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
Q LP+ + T P+ LA+++ + T + ++FFT GS A D+ ++ +YNN
Sbjct: 82 QAMVLPYASPW-YMATSPAARLAEKIATL-TPGDLNRIFFTTGGSTAVDSALRFSEFYNN 139
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE 180
LGRP KK+ I R YHGST + A+ +G FD+ + P+
Sbjct: 140 VLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRH--AGNR 197
Query: 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240
++E + L ED I GP+TIAAF+AEP++ +GGVI PPA Y + +A+ +K+DIL
Sbjct: 198 SQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDIL 257
Query: 241 FIADEVICAFGRLGTMFGCDK-YSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQS 299
+I+DEV+ FGR G F +K + + PD+++FAK ++S Y+P+G + +S V I ++
Sbjct: 258 YISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGEN 317
Query: 300 NTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGE 359
F++G+TYS PV+CA A+ +++ + IV+Q ++A F + + D P + E
Sbjct: 318 AKGSWFTNGYTYSNQPVACAAALANIELMEREGIVDQAREMADYFAAALASLRDLPGVAE 377
Query: 360 IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSP 419
R GL+ + + + + + +C + G++VR GD ++SPP I+S
Sbjct: 378 TRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPLGDLCVISPPLIISR 437
Query: 420 EEVDELISKYGKALKATEERVK 441
++DE+++ +A+
Sbjct: 438 AQIDEMVAIMRQAITEVSAAHG 459
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} Length = 472 | Back alignment and structure |
|---|
Score = 644 bits (1664), Expect = 0.0
Identities = 168/444 (37%), Positives = 261/444 (58%), Gaps = 10/444 (2%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
L PF+A + VI ++ G ++ D G++ LD++AGLWC +G L A
Sbjct: 23 HLHPFSANNALGEEGTRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAAR 82
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
Q+ LP+Y++F+ T P++ LA++L E+ + VFF GSEANDT +++V Y
Sbjct: 83 QMRELPYYNTFFKTTHVPAIALAQKLAEL-APGDLNHVFFAGGGSEANDTNIRMVRTYWQ 141
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE 180
G+P K I+R+ +YHGST+ +++L G+ +H + L P V H + P++W +
Sbjct: 142 NKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLI-PDVHHINQPNWWAEGGDMD 200
Query: 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240
EE+ A LE+ IL+ G +AAFIAEPV GAGGVI P +Y+ ++Q + KYDIL
Sbjct: 201 -PEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDIL 259
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
IADEVIC FGR G FG I+P +++ AK LSS Y PIG +V EV+ VI
Sbjct: 260 LIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGK--- 316
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKI-APKFQDGVKAFSDSPIIGE 359
F+HG+TYSGHPV+ AVA+E L+I +E NI++ V + AP ++ +A +D P++GE
Sbjct: 317 --DEFNHGYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALTDHPLVGE 374
Query: 360 IRGTGLILGTEFADNKSPNEPFPPEWG-IGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMS 418
+ G++ NK+ F E G IG +C + +++R GD +++SPP +++
Sbjct: 375 AKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHVGDRMIISPPLVIT 434
Query: 419 PEEVDELISKYGKALKATEERVKE 442
P E+DE+ + K+L + +++
Sbjct: 435 PAEIDEMFVRIRKSLDEAQAEIEK 458
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} Length = 449 | Back alignment and structure |
|---|
Score = 628 bits (1623), Expect = 0.0
Identities = 139/437 (31%), Positives = 215/437 (49%), Gaps = 11/437 (2%)
Query: 4 PFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLN 63
P+TA P +I +EGS++ D G+K DSL+GLW G + + A QL+
Sbjct: 22 PYTANRNFLR-DPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLS 80
Query: 64 TLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALG 123
TL + F S LA+++ ++ T + VFFT+SGSE T VK+V Y G
Sbjct: 81 TLDYSPGF-QYGHPLSFQLAEKITDL-TPGNLNHVFFTDSGSECALTAVKMVRAYWRLKG 138
Query: 124 RPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEE 183
+ K K I R + YHG + SL G+ + F P V H A+ +
Sbjct: 139 QATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPK 198
Query: 184 EYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIA 243
E LA+ L LI IAA EP+ G+ GV+ PP Y ++ + + +++IL +
Sbjct: 199 EGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVF 258
Query: 244 DEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNT-- 301
DEVI FGR G+MFG D + + PDL+ AK +++ +P+GA++ S E+ + +Q
Sbjct: 259 DEVITGFGRTGSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEY 318
Query: 302 LGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIR 361
F HG+TYS HPV+CA + AL + ++ N+V+ V ++AP F+ + + + +IR
Sbjct: 319 AVEFPHGYTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKGAKNVIDIR 378
Query: 362 GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEE 421
GL + A P E G+ + K G VR GD + P F P++
Sbjct: 379 NFGLAGAIQIAPRDGDAIVRPFEAGMALW------KAGFYVRFGGDTLQFGPTFNSKPQD 432
Query: 422 VDELISKYGKALKATEE 438
+D L G+ L +
Sbjct: 433 LDRLFDAVGEVLNKLLD 449
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} Length = 452 | Back alignment and structure |
|---|
Score = 608 bits (1570), Expect = 0.0
Identities = 136/430 (31%), Positives = 228/430 (53%), Gaps = 12/430 (2%)
Query: 12 TDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSF 71
+ V K+EG +V D+ GK+YLD ++GLWC G L AA QL TL ++
Sbjct: 28 SPNSTTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFP-- 85
Query: 72 WNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFI 131
+++ +P++ LA++L E +FF+NSGSEAN+T K+ Y G P++ KF+
Sbjct: 86 MSQSHEPAIKLAEKLNEW--LGGEYVIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFM 143
Query: 132 ARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191
+R + YHG+T+ + +G +++ A LH P +R E E Y
Sbjct: 144 SRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPG-IERENIYDVECVK 202
Query: 192 NLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG 251
++ ++ E ETIAAFI EP+I GG++ P Y + V +K+ L I+DEVIC FG
Sbjct: 203 EVDRVMTWELSETIAAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALLISDEVICGFG 262
Query: 252 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTY 311
R G FG Y +KPD+++ AK ++SAY+P+ A V E+ E + F H T+
Sbjct: 263 RTGKAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKG-EYEFFRHINTF 321
Query: 312 SGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA-FSDSPIIGEIRGTGLILGTE 370
G+P +CA+A++ L+I + N++E+ ++ + +K + P++G+IRG GL++G E
Sbjct: 322 GGNPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIE 381
Query: 371 FADNKSPNEPFPPEWGIGAYFGAQ-----CEKHGMLVRVSGDNIMMSPPFIMSPEEVDEL 425
++K EP + + ++GM + + ++PP ++S EE+ +
Sbjct: 382 LVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFV 441
Query: 426 ISKYGKALKA 435
I A++
Sbjct: 442 IGTLKTAMER 451
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, pyridoxal phosphate, PSI-2, protein structure initiative; 1.70A {Deinococcus radiodurans} Length = 430 | Back alignment and structure |
|---|
Score = 574 bits (1483), Expect = 0.0
Identities = 129/432 (29%), Positives = 209/432 (48%), Gaps = 26/432 (6%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
V + EG ++YD G++YLD +G +G + AQ LPF H +
Sbjct: 12 YPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGS-QFS 70
Query: 76 TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQK 135
+ + A L + + + GSEA ++ VKL Y+ G P + K I R
Sbjct: 71 SDVLEEYAGRLARF-VGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVP 129
Query: 136 SYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLED 195
SYHG++L + + SG+ A + + P + P P A L
Sbjct: 130 SYHGASLGSLAASGMGARRELYT---PLMRPEAWPKL-----PKPDPARNGAEDAEGLRA 181
Query: 196 LILKEGPETIAAFIAEPVIGA-GGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLG 254
L+ +EGPET+AAF+AEPV+GA + P Y+E+V+ + + I+FIADEV+ GR G
Sbjct: 182 LLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCG 241
Query: 255 TMFGCDKYS-IKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSG 313
+ ++S + PD+ K L++ Y P+ +L +P+V E + S G+F HGFTY+G
Sbjct: 242 SPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGS---GAFMHGFTYAG 298
Query: 314 HPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA-FSDSPIIGEIRGTGLILGTEFA 372
HPVS A + L I + ++ + + G++A + P + ++RGTGL+LG
Sbjct: 299 HPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLG 358
Query: 373 DNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR--------VSGDNIMMSPPFIMSPEEVDE 424
D + + F GI + GA K G++ GD++++ PP ++ EVD
Sbjct: 359 D-LATGQAFETP-GIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDG 416
Query: 425 LISKYGKALKAT 436
L++ AL+
Sbjct: 417 LLALLAGALEDV 428
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} PDB: 3drd_A 3du4_A* Length = 448 | Back alignment and structure |
|---|
Score = 482 bits (1242), Expect = e-169
Identities = 135/434 (31%), Positives = 223/434 (51%), Gaps = 7/434 (1%)
Query: 4 PFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLN 63
PFT + D +PL+IE G V D+NGK+Y D + +W G + L A QL
Sbjct: 16 PFTQ-MKDYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLG 74
Query: 64 TLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALG 123
+ + + T P+ LA+ L+++ + K+ +VF+++SG+EA + +K+ + Y +G
Sbjct: 75 KIA-HSTLLGMTNVPATQLAETLIDI-SPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIG 132
Query: 124 RPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEE 183
+P K+KFIA + YHG T+ A S+ + H + P+ +R +
Sbjct: 133 KPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYR--SESGDPD 190
Query: 184 EYSTRLANNLEDLILKEGPETIAAFIAEPVI-GAGGVIPPPATYFEKVQAVVKKYDILFI 242
E + L L L+E E IAA E ++ GA G+I P Y V+ + YD+L I
Sbjct: 191 ECRDQCLRELAQL-LEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMI 249
Query: 243 ADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTL 302
DEV FGR G MF C+ +++PDL++ K ++ Y+PI + ++ + + L
Sbjct: 250 VDEVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENL 309
Query: 303 GSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRG 362
+F HG +Y+G+ + CAVA+E L +++ NIVEQV + + K ++ P +G+IR
Sbjct: 310 KTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQ 369
Query: 363 TGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEV 422
G + G E +K EP+P + IG + + GML R GD I PP + EE+
Sbjct: 370 LGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPLGDVIAFLPPLASTAEEL 429
Query: 423 DELISKYGKALKAT 436
E+++ +A+
Sbjct: 430 SEMVAIMKQAIHEV 443
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* Length = 433 | Back alignment and structure |
|---|
Score = 366 bits (942), Expect = e-124
Identities = 108/427 (25%), Positives = 196/427 (45%), Gaps = 26/427 (6%)
Query: 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNR 74
P++IE+++GS+VYD +G+ LD +G LG P +V+ L H F
Sbjct: 25 EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLD--HLFSEM 82
Query: 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 134
++P +DLA L + T + + ++G+E+N+ +++ G+ + +
Sbjct: 83 LSRPVVDLATRLANI-TPPGLDRALLLSTGAESNEAAIRMAKLVT---GKY---EIVGFA 135
Query: 135 KSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLE 194
+S+HG T AAS + + A P +R +Y +
Sbjct: 136 QSWHGMTGAAASATYSAG-RKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYL-AELDYAF 193
Query: 195 DLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLG 254
DLI ++ +AAFIAEP++ +GG+I P Y ++ + +L I DE GR G
Sbjct: 194 DLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTG 253
Query: 255 TMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGH 314
TMF C + + PD+++ +K L + +P+ AI+ S + E H + T+
Sbjct: 254 TMFACQRDGVTPDILTLSKTLGA-GLPLAAIVTSAAIEERAHE-----LGYLFYTTHVSD 307
Query: 315 PVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEFAD 373
P+ AV + L + + +V + N + + + G+ + IG++RG GL+LG E
Sbjct: 308 PLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVK 367
Query: 374 NKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-----GDNIMMSPPFIMSPEEVDELISK 428
++ EP GA +C G+ + + G ++PP +S +E+D +S
Sbjct: 368 DRRTKEPADGL---GAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSL 424
Query: 429 YGKALKA 435
G+A++
Sbjct: 425 LGQAIER 431
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* Length = 831 | Back alignment and structure |
|---|
Score = 349 bits (898), Expect = e-113
Identities = 96/487 (19%), Positives = 164/487 (33%), Gaps = 61/487 (12%)
Query: 4 PFTA--GWQSTDVHPLVIEKSEGSYVYDVNG----KKYLDSLAGLWCTALG-GSEPRLVA 56
PFT V + E +Y + + D+ A W + L
Sbjct: 345 PFTQHKLVHQETVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAR 404
Query: 57 AATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVW 116
+ F +P+L A+ LL+ ++V+F+++GS A + +K+ +
Sbjct: 405 EMGYTAARFG-HVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAF 463
Query: 117 YY---------NNALGRPNKKKFIARQKSYHGSTLIAASLSG------------------ 149
+ K IA + SYHG TL A
Sbjct: 464 RKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGL 523
Query: 150 ------LPALHQKFDLPAPFVLHTDCPHYWRYAHPGET----------EEEYSTRLANNL 193
+ + +++ P P Y + E YS L+ +L
Sbjct: 524 FLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHL 583
Query: 194 EDLILKEGPETIAAFIAEPVI-GAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252
++ + A I EPVI GAGG+ + + + I I DEV F R
Sbjct: 584 QEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWR 643
Query: 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS 312
LG + KPD+ FAK L+ +P+ L + V + S + HG +YS
Sbjct: 644 LGVETTTELLGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKL-KALLHGHSYS 702
Query: 313 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKF-----QDGVKAFSDSPIIGEIRGTGLIL 367
H + CA A +A++ +K+ + ++ V+ S + + G +
Sbjct: 703 AHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLF 762
Query: 368 GTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELIS 427
E + S + + G+ R G+ I + SPE L++
Sbjct: 763 ALELKADASNS---GYASLYAKSLLIMLREDGIFTRPLGNVIYLMCGPCTSPEICRRLLT 819
Query: 428 KYGKALK 434
K K L
Sbjct: 820 KLYKRLG 826
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* Length = 457 | Back alignment and structure |
|---|
Score = 334 bits (860), Expect = e-111
Identities = 102/438 (23%), Positives = 195/438 (44%), Gaps = 35/438 (7%)
Query: 4 PFTAGWQSTDVHPLVIEKSEGSYVY---DVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
P+++ V P+V + G+++ D + LD+++ W G P L A T
Sbjct: 44 PYSS-IGREAVSPVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTT 102
Query: 61 QLNTLPFYHS-FWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYN 119
QL + H F T +P+ LAK L+++ T + + VFF++SGS + + K+ Y
Sbjct: 103 QLRVMN--HVMFGGLTHEPAARLAKLLVDI-TPAGLDTVFFSDSGSVSVEVAAKMALQYW 159
Query: 120 NALGRPNKKKFIARQKSYHGSTLIAASLSGLPAL-HQKFDLPAPFVLHTDCPHYWRYAHP 178
G P K++ + + YHG T +A S+ H + + P
Sbjct: 160 RGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQV-------P 212
Query: 179 GETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVI-GAGGVIPPPATYFEKVQAVVKKY 237
+ + Y + E L + +AA + EPV+ GAGG+ Y ++ + ++Y
Sbjct: 213 RDYDPAY----SAAFEAQ-LAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRY 267
Query: 238 DILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHS 297
++L I DE+ FGR G +F D + PD++ KAL+ Y+ + A L + +V+ I +
Sbjct: 268 EVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISA 327
Query: 298 QSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPII 357
+ G+ HG T+ +P++CAV++ ++++ ++ ++ ++A G+ P +
Sbjct: 328 GAA--GALMHGPTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTARALPAV 385
Query: 358 GEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIM 417
++R G I E P G+ +R + + PP+I
Sbjct: 386 TDVRVCGAIGVIECDRPVDLAVATP-----------AALDRGVWLRPFRNLVYAMPPYIC 434
Query: 418 SPEEVDELISKYGKALKA 435
+P E+ ++ S + +
Sbjct: 435 TPAEITQITSAMVEVARL 452
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* Length = 429 | Back alignment and structure |
|---|
Score = 332 bits (854), Expect = e-111
Identities = 111/435 (25%), Positives = 202/435 (46%), Gaps = 30/435 (6%)
Query: 4 PFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLN 63
PFT+ ++ + + +EG + +G++ +D ++ W G + P+L AA +Q++
Sbjct: 16 PFTS--MTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQID 73
Query: 64 TLPFYHS-FWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNAL 122
+ H F T P+++L ++L+ M T + VF +SGS A + +K+ Y A
Sbjct: 74 AMS--HVMFGGITHAPAIELCRKLVAM-TPQPLECVFLADSGSVAVEVAMKMALQYWQAK 130
Query: 123 GRPNKKKFIARQKSYHGSTLIAASLSGLPAL-HQKFDLPAPFVLHTDCPHYWRYAHPGET 181
G +++F+ + YHG T A S+ H + P L P
Sbjct: 131 GEA-RQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRM------- 182
Query: 182 EEEYSTRLANNLEDLILKEGPETIAAFIAEPVI-GAGGVIPPPATYFEKVQAVVKKYDIL 240
+ E+ R L + IAA I EP++ GAGG+ + ++++ + + IL
Sbjct: 183 DGEWDERDMVGFARL-MAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGIL 241
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
IADE+ FGR G +F C+ I PD++ KAL+ M + A L + EV+E I +
Sbjct: 242 LIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETIS--NG 299
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI 360
G F HG T+ G+P++CA A +L I + + +QV I + ++ + D+ ++ ++
Sbjct: 300 EAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADV 359
Query: 361 RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPE 420
R G I E + + G+ +R G I + PP+I+ P+
Sbjct: 360 RVLGAIGVVETTHPVNMAALQ-----------KFFVEQGVWIRPFGKLIYLMPPYIILPQ 408
Query: 421 EVDELISKYGKALKA 435
++ L + +A++
Sbjct: 409 QLQRLTAAVNRAVQD 423
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A Length = 451 | Back alignment and structure |
|---|
Score = 327 bits (840), Expect = e-108
Identities = 102/427 (23%), Positives = 189/427 (44%), Gaps = 25/427 (5%)
Query: 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNR 74
P+ ++ G V DV+G + +D +G+ T +G S P++V A +Q+ F
Sbjct: 43 MPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHT-CFMVT 101
Query: 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 134
+ + + ++L + + NSGSEA + VK+ + +P +A
Sbjct: 102 PYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHT---HKPA---VVAFD 155
Query: 135 KSYHGSTLIAASLSGLPALHQK-FDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNL 193
+YHG T + +L+ ++ F AP + + +R A G+ A
Sbjct: 156 HAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRA 215
Query: 194 EDLILKE-GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252
+I K+ G + +AA + EP+ G GG I P + + +K D++FIADEV F R
Sbjct: 216 ITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFAR 275
Query: 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS 312
G MF C+ I PDL+ AK ++ +P+ A+ E+ + H G TY
Sbjct: 276 TGAMFACEHEGIDPDLIVTAKGIAGG-LPLSAVTGRAEIMDSPHVS-------GLGGTYG 327
Query: 313 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEF 371
G+P++CA A+ ++ + +V + +I +D + ++ IG++RG G ++ E
Sbjct: 328 GNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMEL 387
Query: 372 ADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--DNIM-MSPPFIMSPEEVDELISK 428
+ P+ + A G++V G N++ PP + + ++E +
Sbjct: 388 VKAGTT----EPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDV 443
Query: 429 YGKALKA 435
+ L+
Sbjct: 444 LEEVLRG 450
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* Length = 426 | Back alignment and structure |
|---|
Score = 325 bits (836), Expect = e-108
Identities = 108/430 (25%), Positives = 200/430 (46%), Gaps = 32/430 (7%)
Query: 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNR 74
HP+ +++E V+DV G++YLD G+ G P++VAA AQL L F
Sbjct: 23 HPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHT-CFQVL 81
Query: 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 134
+P L+L + + + K +GSEA + VK+ R IA
Sbjct: 82 AYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAAT---KRSG---TIAFS 135
Query: 135 KSYHGSTLIAASLSGLPALHQK-FDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNL 193
+YHG T +L+G + L V P G +E++ ++
Sbjct: 136 GAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLH----GISEDDA----IASI 187
Query: 194 EDLILKE-GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252
+ + PE IAA + EPV G GG + ++++A+ ++ I+ IADEV GR
Sbjct: 188 HRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGR 247
Query: 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS 312
GT+F ++ + PDL +FAK+++ P+ + EV + + G TY+
Sbjct: 248 TGTLFAMEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPG-------GLGGTYA 299
Query: 313 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEF 371
G+P++C A+E LK++++ N++++ N + K +DG+ A ++ P IG++RG G ++ E
Sbjct: 300 GNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIEL 359
Query: 372 ADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--DNIM-MSPPFIMSPEEVDELISK 428
++ N+P + A A+ G+++ G N++ + P + ++ + +
Sbjct: 360 FEDGDHNKPDA---KLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEI 416
Query: 429 YGKALKATEE 438
+ ++
Sbjct: 417 ISQCFDEAKQ 426
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} Length = 419 | Back alignment and structure |
|---|
Score = 323 bits (830), Expect = e-107
Identities = 121/433 (27%), Positives = 204/433 (47%), Gaps = 45/433 (10%)
Query: 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLPFYH-SF 71
+ PLVI+ EG ++YDV+G KYLD +G+ LG S P ++ Q+ H +
Sbjct: 23 LFPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQK--LAHAAA 80
Query: 72 WNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFI 131
+ P L+LAK+L+ + KVFF+NSG+EA + +K+V GR I
Sbjct: 81 NDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNT----GRKY---II 133
Query: 132 ARQKSYHGSTLIAASLSGLPALHQK-FDLPAPFVLHT---DCPHYWRYAHPGETEEEYST 187
A +HG T + SL+ A+ + P V+H + + + E E
Sbjct: 134 AFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVN 193
Query: 188 RLANNLEDLILKE--GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADE 245
R+ +ED I PE +A EP+ G GG + PP +F ++Q + KKY IL + DE
Sbjct: 194 RVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDE 253
Query: 246 VICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSF 305
V GR G +F + ++ PD+++ AKAL MPIGA + ++
Sbjct: 254 VQMGLGRTGKLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDLD---------FKPG 304
Query: 306 SHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGL 365
H T+ G+ ++CA+ + + I K+ ++ VN+I F + ++ + ++RG GL
Sbjct: 305 MHSNTFGGNALACAIGSKVIDIVKD--LLPHVNEIGKIFAEELQG-----LADDVRGIGL 357
Query: 366 ILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDE 424
G E+ + K + + K G+L+ +G + + + PP ++S EE +
Sbjct: 358 AWGLEYNEKKVRDR-----------IIGESFKRGLLLLPAGRSAIRVIPPLVISEEEAKQ 406
Query: 425 LISKYGKALKATE 437
+ K +K +
Sbjct: 407 GLDILKKVIKVVK 419
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* Length = 439 | Back alignment and structure |
|---|
Score = 322 bits (829), Expect = e-107
Identities = 98/446 (21%), Positives = 178/446 (39%), Gaps = 29/446 (6%)
Query: 5 FTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNT 64
Q PL I G+ + + NG++ +D +LG P +VAA +A
Sbjct: 15 AIGNLQKLRFFPLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAAN 74
Query: 65 LPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGR 124
+ + P++ LA+ LL F K++F +SGS+AN+ + + GR
Sbjct: 75 PAGAT-ILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKAT---GR 130
Query: 125 PNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEE 184
IA +YHG T+ + + SG Q A ++ P +R +
Sbjct: 131 SG---VIAFAGAYHGCTVGSMAFSGHSV--QADAAKADGLILLPYPDPYR----PYRNDP 181
Query: 185 YSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIAD 244
+ L + + +I A EP+ GG+I PP + K + + + IL + D
Sbjct: 182 TGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCD 241
Query: 245 EVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGS 304
EV R G + + PD++ K L +P+ A++ E+ + +
Sbjct: 242 EVKVGLARSGRLHCFEHEGFVPDILVLGKGLGGG-LPLSAVIAPAEILDCASA------- 293
Query: 305 FSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGT 363
T G+P+S A + L+ ++ + +DG+ + P+IG+IRG
Sbjct: 294 -FAMQTLHGNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGR 352
Query: 364 GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--DNIM-MSPPFIMSPE 420
GL G E ++ EP E A + + G++V G N++ +PP ++
Sbjct: 353 GLACGMELVCDRQSREPARAE---TAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITET 409
Query: 421 EVDELISKYGKALKATEERVKELKSQ 446
++ + + +A E +Q
Sbjct: 410 DIHKALDLLDRAFSELSAVSNEEIAQ 435
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} Length = 453 | Back alignment and structure |
|---|
Score = 318 bits (817), Expect = e-105
Identities = 112/430 (26%), Positives = 193/430 (44%), Gaps = 28/430 (6%)
Query: 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNR 74
P+ ++G + D +G ++D AG+ T +G S P + AA Q F
Sbjct: 46 APVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHT-CFMVT 104
Query: 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 134
+ + +A+ L + + NSG+EA + +K+ GRP +A
Sbjct: 105 PYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLAT---GRPA---VVAFD 158
Query: 135 KSYHGSTLIAASLSGLPALHQK-FDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNL 193
+YHG T + +L+ ++ F AP V + R PG T EE + R + +
Sbjct: 159 NAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDE-PGLTGEEAARRAISRI 217
Query: 194 EDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRL 253
E I G +++AA I EP+ G GG I P + + A + ++FIADEV F R
Sbjct: 218 ETQI---GAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFART 274
Query: 254 GTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSG 313
G F + I PD+V+ AK ++ MP+ A+ E+ + +++ G TY G
Sbjct: 275 GAWFASEHEGIVPDIVTMAKGIAGG-MPLSAVTGRAELMDAVYAG-------GLGGTYGG 326
Query: 314 HPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEFA 372
+PV+CA A+ AL + +E ++ + I + A ++ IIGE+RG G +L E
Sbjct: 327 NPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIV 386
Query: 373 DNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--DNIM-MSPPFIMSPEEVDELISKY 429
+ P+ + A+ G+L+ G N++ + PP ++ + +DE I+
Sbjct: 387 KPGTL----EPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITAL 442
Query: 430 GKALKATEER 439
++A
Sbjct: 443 SDIIRAKASH 452
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A Length = 433 | Back alignment and structure |
|---|
Score = 306 bits (786), Expect = e-100
Identities = 121/432 (28%), Positives = 195/432 (45%), Gaps = 53/432 (12%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS---FW 72
P+V+++++G +VYDVN K+Y D L+ G P ++ A Q L F+
Sbjct: 48 PVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNL--TICSRAFF 105
Query: 73 NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV--WYYNNALGRPNKKKF 130
+ P + L + KV N+G+EAN+T KL W Y N K
Sbjct: 106 S---VPLGICERYLTNLL---GYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKI 159
Query: 131 IARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190
+ + ++ G TL S S F PF P ++ Y
Sbjct: 160 VVCKNNFSGRTLGCISASTTKKCTSNFG---PFA-------------PQFSKVPY----- 198
Query: 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250
++LE L + + AFI EP+ G GVI P Y + V + KKY++LF+ADEV
Sbjct: 199 DDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGL 258
Query: 251 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFT 310
GR G + Y++KPD++ KALS + PI A+L + ++ VI G HG T
Sbjct: 259 GRTGKLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKP-----G--EHGST 311
Query: 311 YSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGT 369
Y G+P++ ++ +EAL + + E K+ F + +K DS I+ ++RG GL+
Sbjct: 312 YGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAI 371
Query: 370 EFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELISK 428
EF I + +++G++ R D + ++PP ++ E++DE
Sbjct: 372 EF------KNELVNVLDI----CLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEI 421
Query: 429 YGKALKATEERV 440
K +K +ER
Sbjct: 422 IVKTVKFFDERF 433
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* Length = 439 | Back alignment and structure |
|---|
Score = 301 bits (774), Expect = 1e-98
Identities = 111/426 (26%), Positives = 188/426 (44%), Gaps = 52/426 (12%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS---FW 72
P+ +E+ +G Y++DV G+KY D L+ G P++V A +Q++ L + F+
Sbjct: 59 PVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKL--TLTSRAFY 116
Query: 73 NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV--WYYNNALGRPNKKKF 130
N + + + ++F KV N+G EA +T KL W Y + K K
Sbjct: 117 N---NVLGEYEEYITKLF---NYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKI 170
Query: 131 IARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190
+ ++ G TL A S S P + F PF+ PG Y
Sbjct: 171 VFAAGNFWGRTLSAISSSTDPTSYDGF---GPFM-------------PGFDIIPY----- 209
Query: 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250
N+L L +AAF+ EP+ G GV+ P Y V+ + ++ +LFIADE+
Sbjct: 210 NDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGL 269
Query: 251 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFT 310
R G D +++PD+V KALS P+ A+L ++ I G HG T
Sbjct: 270 ARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKP-----G--EHGST 322
Query: 311 YSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTE 370
Y G+P+ C VAI AL++ +E N+ E +K+ ++ + S ++ +RG GL+
Sbjct: 323 YGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKL-PSDVVTAVRGKGLLNAIV 381
Query: 371 FADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELISKY 429
+ + +G+L + + +I+ +PP ++ +E+ E I
Sbjct: 382 IK---------ETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEII 432
Query: 430 GKALKA 435
K + +
Sbjct: 433 NKTILS 438
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} Length = 392 | Back alignment and structure |
|---|
Score = 296 bits (760), Expect = 3e-97
Identities = 116/424 (27%), Positives = 195/424 (45%), Gaps = 57/424 (13%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS---FW 72
P+VI K+EG +V D G +Y+D L+ G P+++ A Q N + + F
Sbjct: 19 PIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRV--TLTSRAFH 76
Query: 73 NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV--WYYNNALGRPNKKKF 130
+ +++ ++ V N+G+EA +T +K W Y+ N+ +
Sbjct: 77 S---DQLGPWYEKVAKLT---NKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEI 130
Query: 131 IARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190
I + ++HG T+ A S+S + F P + PG Y
Sbjct: 131 IVCEDNFHGRTMGAVSMSSNEEYKRGFG---PML-------------PGIIVIPY----- 169
Query: 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250
+LE L P T AAFI EP+ G G+ PPA + ++ V KK ++LF+ADE+
Sbjct: 170 GDLEALKAAITPNT-AAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGL 228
Query: 251 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFT 310
GR G +F CD ++ PD+ KAL PI + ++ V G SHG T
Sbjct: 229 GRTGKVFACDWDNVTPDMYILGKALGGGVFPISCAAANRDILGVFEP-----G--SHGST 281
Query: 311 YSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTE 370
+ G+P++CAV+I AL++ +E + E+ ++ K +K D+P+I E+RG GL +G E
Sbjct: 282 FGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKEI-DNPMITEVRGKGLFIGIE 340
Query: 371 FADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELISKY 429
P Q + G+L + + +N++ ++PP ++S E+++ K
Sbjct: 341 LN---------EPARPY----CEQLKAAGLLCKETHENVIRIAPPLVISEEDLEWAFQKI 387
Query: 430 GKAL 433
L
Sbjct: 388 KAVL 391
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Length = 395 | Back alignment and structure |
|---|
Score = 293 bits (752), Expect = 5e-96
Identities = 105/422 (24%), Positives = 185/422 (43%), Gaps = 59/422 (13%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS---FW 72
L+I + +G+ V+D G +Y+D + G LG P +V A Q TL
Sbjct: 28 DLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETL--MAMPQTLP 85
Query: 73 NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIA 132
+ + L + ++ +VF NSG+EAN+ +K + +KKF+A
Sbjct: 86 T---PMRGEFYRTLTAI-LPPELNRVFPVNSGTEANEAALKFARAH------TGRKKFVA 135
Query: 133 RQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 192
+ + G T+ + S++ P + F P V Y N+
Sbjct: 136 AMRGFSGRTMGSLSVTWEPKYREPF---LPLV-------------EPVEFIPY-----ND 174
Query: 193 LEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252
+E L ET AA I EPV G GGV P + + + ++ L I DE+ GR
Sbjct: 175 VEALKRAVDEET-AAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGR 233
Query: 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS 312
G F + + I PD+++ AKAL +P+G ++ EV+ + G HG T+
Sbjct: 234 TGKRFAFEHFGIVPDILTLAKALGGG-VPLGVAVMREEVARSM-----PKG--GHGTTFG 285
Query: 313 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFA 372
G+P++ A + A++ + + E+ ++ P F + ++A SP I E+RG GL++G E
Sbjct: 286 GNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAI-PSPKIREVRGMGLMVGLELK 344
Query: 373 DNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELISKYGK 431
+ +P Y ++H +L +G ++ PP ++ E+++ ++
Sbjct: 345 EKAAP------------YIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRA 392
Query: 432 AL 433
L
Sbjct: 393 VL 394
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A Length = 449 | Back alignment and structure |
|---|
Score = 289 bits (741), Expect = 1e-93
Identities = 78/435 (17%), Positives = 152/435 (34%), Gaps = 38/435 (8%)
Query: 16 PLVIEKSEGSYVYD-VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTL---PFYHSF 71
L + +S GSY+ D + G++YLD + +ALG + P LV + S
Sbjct: 36 VLDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSN 95
Query: 72 WNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPN----- 126
+ + + + + +FF G+ A + +K + + + + +
Sbjct: 96 SDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPA 155
Query: 127 -KKKFIARQKSYHGSTLIAASLSGLPALHQKFD--LPAPFVLHTDCPHYWRYAHPGETEE 183
+ + + ++HG + SL+ P + D P Y R
Sbjct: 156 LGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRI---DAP-YMRPGLDEPAMA 211
Query: 184 EYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIA 243
+ P IA F+AEP+ G GG +F ++ + ++D L I
Sbjct: 212 ALEAEALRQARAAF-ETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIF 270
Query: 244 DEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLG 303
DEV G GT + + + PD+V+F K + G + +
Sbjct: 271 DEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKTQVCGVMAGRRVDEVADNVF-------AV 323
Query: 304 SFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD--SPIIGEIR 361
T+ G+ A L++ + + E+ + + + + ++ + R
Sbjct: 324 PSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPR 383
Query: 362 GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN-IMMSPPFIMSPE 420
G GL+ +E Q + ++V +G + + PP +S
Sbjct: 384 GRGLMCAFSLPTTADRDE-----------LIRQLWQRAVIVLPAGADTVRFRPPLTVSTA 432
Query: 421 EVDELISKYGKALKA 435
E+D I+ AL
Sbjct: 433 EIDAAIAAVRSALPV 447
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* Length = 420 | Back alignment and structure |
|---|
Score = 287 bits (736), Expect = 2e-93
Identities = 118/425 (27%), Positives = 197/425 (46%), Gaps = 52/425 (12%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS---FW 72
+ K +GS V+D GK+Y+D G+ TALG P LV A +Q TL +H+ F
Sbjct: 40 DFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETL--WHTSNVFT 97
Query: 73 NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIA 132
N +P+L L ++L++ A+ +V F NSG+EAN+T KL +Y P K K IA
Sbjct: 98 N---EPALRLGRKLID---ATFAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIA 151
Query: 133 RQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 192
++HG +L S+ G P F P + N+
Sbjct: 152 FHNAFHGRSLFTVSVGGQPKYSDGF---GPKP-------------ADIIHVPF-----ND 190
Query: 193 LEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252
L + T A + EP+ G GGV + + ++ + ++ L + DEV C GR
Sbjct: 191 LHAVKAVMDDHT-CAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGR 249
Query: 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS 312
G +F Y + PD+++ AKAL P+ A+L + E++ +G SHG TY
Sbjct: 250 TGDLFAYMHYGVTPDILTSAKALGGG-FPVSAMLTTQEIASAF-----HVG--SHGSTYG 301
Query: 313 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEF 371
G+P++CAVA A I +++ ++ +F ++A + I +IRG GL++G E
Sbjct: 302 GNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAEL 361
Query: 372 ADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELISKYG 430
P G F + G++V +G ++M +P ++ ++ E + ++
Sbjct: 362 K---------PKYKGRARDFLYAGAEAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRFA 412
Query: 431 KALKA 435
+A+
Sbjct: 413 QAVGK 417
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} Length = 395 | Back alignment and structure |
|---|
Score = 285 bits (732), Expect = 6e-93
Identities = 122/425 (28%), Positives = 203/425 (47%), Gaps = 54/425 (12%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS---FW 72
+V+EK +G Y++D KKYLD +G+ ALG + + A AQ++ L H+ ++
Sbjct: 19 DIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKL--LHTSNLYY 76
Query: 73 NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIA 132
N + AK L + AS + +VFFTNSG+E+ + +K Y G +FIA
Sbjct: 77 N---ENIAAAAKNLAK---ASALERVFFTNSGTESIEGAMKTARKYAFNKG-VKGGQFIA 129
Query: 133 RQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 192
+ S+HG TL A SL+ + F P + G +Y N+
Sbjct: 130 FKHSFHGRTLGALSLTANEKYQKPF---KPLI-------------SGVKFAKY-----ND 168
Query: 193 LEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252
+ + +T A I E V G GG+ P +++ ++ + + DIL IADE+ C GR
Sbjct: 169 ISSVEKLVNEKT-CAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGR 227
Query: 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS 312
G F + I PD+++ AKAL + +GA +++ +V+ SN+L + HG TY
Sbjct: 228 SGKFFAYEHAQILPDIMTSAKALGCG-LSVGAFVINQKVA------SNSLEAGDHGSTYG 280
Query: 313 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEF 371
G+P+ CA +I+KE I+E VNK+ P + + + + +G G + G
Sbjct: 281 GNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGFMQGLSL 340
Query: 372 ADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELISKYG 430
+ + +C+++ +L+ G+N + PP I+ E +DE+ K
Sbjct: 341 DKSVKVAK-----------VIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLR 389
Query: 431 KALKA 435
KALK+
Sbjct: 390 KALKS 394
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* Length = 397 | Back alignment and structure |
|---|
Score = 282 bits (723), Expect = 1e-91
Identities = 118/425 (27%), Positives = 196/425 (46%), Gaps = 56/425 (13%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS---FW 72
P +GS++YD G YLD +G+ LG S PRLV A Q L H FW
Sbjct: 23 PATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKL--IHCSNLFW 80
Query: 73 NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIA 132
N +P ++LA+ L + + KVFF N+G+EAN+ +K+ Y K + ++
Sbjct: 81 N---RPQMELAELLSK---NTFGGKVFFANTGTEANEAAIKIARKYGKKKS-EKKYRILS 133
Query: 133 RQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 192
S+HG TL + + +G P + F P V PG E+ NN
Sbjct: 134 AHNSFHGRTLGSLTATGQPKYQKPF---EPLV-------------PGFEYFEF-----NN 172
Query: 193 LEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252
+EDL K + A EP+ G G++P + E+ + + +YD L + DEV C GR
Sbjct: 173 VEDLRRKMSEDV-CAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGR 231
Query: 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS 312
G +F KY + PD+++ AK L +PIGA++V+ + L HG T+
Sbjct: 232 TGKLFAYQKYGVVPDVLTTAKGLGGG-VPIGAVIVNERAN--------VLEPGDHGTTFG 282
Query: 313 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEF 371
G+P++C + +K + +E+V + ++ + ++ ++RG GL++G +F
Sbjct: 283 GNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQF 342
Query: 372 ADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELISKYG 430
+ S E +C ++ +LV +G+N + PP + E+D +
Sbjct: 343 REEVSNRE-----------VATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETLK 391
Query: 431 KALKA 435
K L+
Sbjct: 392 KVLQG 396
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* Length = 472 | Back alignment and structure |
|---|
Score = 278 bits (713), Expect = 3e-89
Identities = 81/454 (17%), Positives = 160/454 (35%), Gaps = 57/454 (12%)
Query: 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYH--SFW 72
E+S G+Y+ DV+G + LD + + +G S P LV N F + +
Sbjct: 45 FFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALG 104
Query: 73 NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYY-------------- 118
+ ++ +E L M+++ GS +N+ K ++ +
Sbjct: 105 ILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKE 164
Query: 119 -------NNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH 171
N A G P ++ ++HG T+ + + A+H K D+P+ P
Sbjct: 165 ELETCMINQAPGCP-DYSILSFMGAFHGRTMGCLATTHSKAIH-KIDIPSFDWPIAPFPR 222
Query: 172 Y-WRYAHPGETEEEYSTRLANNLEDLILK--EGPETIAAFIAEPVIGAGGVIPPPATYFE 228
+ + ++ R +EDLI+K + +T+A I EP+ GG +F
Sbjct: 223 LKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFR 282
Query: 229 KVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIK--PDLVSFAKALSSAYMPIGAIL 286
K++ + +K+ F+ DEV G G + + + + D+++F+K + +
Sbjct: 283 KLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTG-GFFHKEE 341
Query: 287 VSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQD 346
P + T+ G P + E + I K +++
Sbjct: 342 FRPNA------------PYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLT 389
Query: 347 GVKAFSD--SPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV 404
G+ I +RG G + D N+ + G+++
Sbjct: 390 GLLDLQARYPQFISRVRGRGTFCSFDTPDESIRNK-----------LISIARNKGVMLGG 438
Query: 405 SGDN-IMMSPPFIMSPEEVDELISKYGKALKATE 437
GD I P + ++ + L +
Sbjct: 439 CGDKSIRFRPTLVFRDHHAHLFLNIFSDILADFK 472
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} Length = 375 | Back alignment and structure |
|---|
Score = 271 bits (695), Expect = 9e-88
Identities = 117/423 (27%), Positives = 195/423 (46%), Gaps = 63/423 (14%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS---FW 72
P+ + +G Y+YD GK+YLD ++G+ +LG + P+L A Q+ L H +
Sbjct: 11 PVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKL--LHVSNLYE 68
Query: 73 NRTTKPSLDLAKELLEMFTASKM-AKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFI 131
N +LA +L++ KVFF NSG+E+ + +KL Y G NK KFI
Sbjct: 69 N---PWQEELAHKLVK---HFWTEGKVFFANSGTESVEAAIKLARKYWRDKG-KNKWKFI 121
Query: 132 ARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191
+ + S+HG T + S +G P H+ F P V PG + + N
Sbjct: 122 SFENSFHGRTYGSLSATGQPKFHKGF---EPLV-------------PGFSYAKL-----N 160
Query: 192 NLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG 251
+++ + ET A I E + G GGV + K+Q + K+ D+L I DEV G
Sbjct: 161 DIDSVYKLLDEET-AGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIG 219
Query: 252 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTY 311
R G + +++KPD+++ AK L +PIGAIL EV++ T G SHG T+
Sbjct: 220 RTGEFYAYQHFNLKPDVIALAKGLGGG-VPIGAILAREEVAQSF-----TPG--SHGSTF 271
Query: 312 SGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEF 371
G+P++C + ++ ++ V ++ F++ +K +++G GL+LG E
Sbjct: 272 GGNPLACRAGTVVVDEVEK--LLPHVREVGNYFKEKLKELGKG----KVKGRGLMLGLEL 325
Query: 372 ADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELISKYG 430
+ + + G+L+ + ++ PP I+ E +D IS
Sbjct: 326 ERECKD-------------YVLKALEKGLLINCTAGKVLRFLPPLIIQKEHIDRAISVLR 372
Query: 431 KAL 433
+ L
Sbjct: 373 EIL 375
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} Length = 453 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 1e-35
Identities = 92/459 (20%), Positives = 161/459 (35%), Gaps = 101/459 (22%)
Query: 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTA-LGGSEPRLVAAATAQLNT-----LPFY 68
H L I ++G + DV+G YLD G LG PR+ AA L+
Sbjct: 39 HGLFISDAQGVHKTDVDGNVYLD-FFGGHGALVLGHGHPRVNAAIAEALSHGVQYAAS-- 95
Query: 69 HSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKK 128
+ A+ ++ F + + K+ FT SG+E +++ A ++
Sbjct: 96 -------HPLEVRWAERIVAAFPS--IRKLRFTGSGTETTLLALRV------ARAFTGRR 140
Query: 129 KFIARQKSYHG-STLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187
+ + YHG A+ PAP V ET T
Sbjct: 141 MILRFEGHYHGWHDFSASG-YNSHF----DGQPAPGV-------------LPETTAN--T 180
Query: 188 RLA--NNLEDL--ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIA 243
L +++E + + IAAFIAEPV GV P ++ + + ++Y LFI
Sbjct: 181 LLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFIL 240
Query: 244 DEVICAFGRLGTMFGC--DKYSIKPDLVSFAKALSSAYMPIGAI--------LVSPEVSE 293
DEVI F R+G ++PDL AKA + +P G + ++S
Sbjct: 241 DEVISGF-RVG--NHGMQALLDVQPDLTCLAKASAGG-LPGGILGGREDVMGVLSRGSDR 296
Query: 294 VIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVK-AFS 352
+ T +G+P++ A AI A+ E ++ ++N + ++ + F+
Sbjct: 297 KVL-HQGTF---------TGNPITAAAAIAAIDTILEDDVCAKINDLGQFAREAMNHLFA 346
Query: 353 DSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWG---------IGAYFGAQCEKHGMLVR 403
+ G + + I A +++
Sbjct: 347 RKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMR------MALILE 400
Query: 404 VSGDNIMMSPP----FI---MSPEEVDELISKYGKALKA 435
G +I F+ E V+ L++ + + L
Sbjct: 401 --GVDI---GGRGSVFLSAQHEREHVEHLVTTFDRVLDR 434
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* Length = 465 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 3e-33
Identities = 75/353 (21%), Positives = 124/353 (35%), Gaps = 79/353 (22%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTA-LGGSEPRLVAAATAQLNT-----LPFYH 69
PLVI + GS DV+G Y++ G + G S P + AA L
Sbjct: 83 PLVIAQGTGSRFQDVDGHAYVN-FLGEYTAGLFGHSHPVIRAAVERALAVGLNLSTQ--- 138
Query: 70 SFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 129
T+ A+ + + F + + V FTNSG+EAN + A +K
Sbjct: 139 ------TENEALFAEAVCDRFPS--IDLVRFTNSGTEANLMALAT------ATAITGRKT 184
Query: 130 FIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189
+A YHG L+ + P + +
Sbjct: 185 VLAFDGGYHGG-LLNFASGHAPTNAPYHVVLGVY-------------------------- 217
Query: 190 ANNLEDL--ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVI 247
N++E +LK AA + EP++GAGG +P + + ++A + L I DEV+
Sbjct: 218 -NDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVM 276
Query: 248 CAFGRLGTMFGC--DKYSIKPDLVSFAKALSSAYMPIGAI--------LVSPEVSEVIHS 297
RL G + I DL + K + M GA P
Sbjct: 277 T--SRLS--GGGAQEMLGISADLTTLGKYIGGG-MSFGAFGGRRDLMERFDPARD----- 326
Query: 298 QSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA 350
G+F+H T++ + ++ + AL R ++ +F+ +
Sbjct: 327 -----GAFAHAGTFNNNILTMSAGHAALTQIYTRQAASDLSASGDRFRANLNR 374
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* Length = 434 | Back alignment and structure |
|---|
Score = 119 bits (302), Expect = 6e-30
Identities = 96/466 (20%), Positives = 164/466 (35%), Gaps = 120/466 (25%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTA-LGGSEPRLVAAATAQLNT-----LPFYH 69
P +++ EG+Y+Y V+G + +D L + LG PR++ A L P
Sbjct: 39 PFYVKRGEGAYLYTVDGARIVD-LVLAYGPLILGHKHPRVLEAVEEALARGWLYGAP--- 94
Query: 70 SFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 129
+ + LA+++L + F NSG+EA T ++L A G +
Sbjct: 95 ------GEAEVLLAEKILGYVKR--GGMIRFVNSGTEATMTAIRL------ARGYTGRDL 140
Query: 130 FIARQKSYHG---STLIAASLSGLPALHQKFDLP------APFVLHTDCPHYWRYAHPGE 180
+ YHG + L+AA S A H + +P T Y
Sbjct: 141 ILKFDGCYHGSHDAVLVAAG-SA--AAH--YGVPTSAGVPEAVARLTLVTPY-------- 187
Query: 181 TEEEYSTRLANNLEDL--ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYD 238
N++E L + E + IA I EPVI GVIPP + +Q + ++
Sbjct: 188 ----------NDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESG 237
Query: 239 ILFIADEVICAFGRLGTMFGC--DKYSIKPDLVSFAKALSSAYMPIGAI--------LVS 288
L I DEV+ F RLG ++I+ D++ K + P+GA+ L++
Sbjct: 238 ALLILDEVVTGF-RLG--LEGAQGYFNIEGDIIVLGKIIGGG-FPVGAVAGSREVMSLLT 293
Query: 289 PEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGV 348
P G + T++ HP++ A + LK +E + + A ++
Sbjct: 294 P------------QGKVFNAGTFNAHPITMAAGLATLKALEEEPVYSVSREAAKALEEAA 341
Query: 349 K-AFSDSPIIGEIRGTGLILGTEFADN---------KSPNEPFPPEWGIGAYFGAQCEKH 398
+ + I ++ K+ + +
Sbjct: 342 SEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFY------VKLH------E 389
Query: 399 GMLVRVSGDNIMMSPP------FI---MSPEEVDELISKYGKALKA 435
ML R G I P F E ++ + +LK
Sbjct: 390 EMLRR--GVFI---APSNLEAVFTGLPHQGEALEIAVEGLRSSLKT 430
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} Length = 434 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 7e-30
Identities = 108/466 (23%), Positives = 171/466 (36%), Gaps = 120/466 (25%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTA-LGGSEPRLVAAATAQLNT-----LPFYH 69
P+ +E+ +G+Y +DV+G KY+D + G + P + A T P
Sbjct: 38 PIAMERGKGAYFWDVDGNKYID-YLAAYGPIITGHAHPHITKAITTAAENGVLYGTP--- 93
Query: 70 SFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 129
T + AK L E A + KV F NSG+EA T +++ A + K
Sbjct: 94 ------TALEVKFAKMLKEAMPA--LDKVRFVNSGTEAVMTTIRV------ARAYTGRTK 139
Query: 130 FIARQKSYHG---STLIAASLSGLPALHQKFDLP------APFVLHTDCPHYWRYAHPGE 180
+ YHG L+AA SG P +
Sbjct: 140 IMKFAGCYHGHSDLVLVAAG-SGPST----LGTPDSAGVPQSIAQEVITVPF-------- 186
Query: 181 TEEEYSTRLANNLEDL--ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYD 238
NN+E L L + +AA + EP++G G++ P + EKV +V +
Sbjct: 187 ----------NNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAG 236
Query: 239 ILFIADEVICAFGRLGTMFGC--DKYSIKPDLVSFAKALSSAYMPIGAI--------LVS 288
L I DEVI AF R +G D + PDL + K + +PIGA V+
Sbjct: 237 ALVIYDEVITAF-RFM--YGGAQDLLGVTPDLTALGKVIGGG-LPIGAYGGKKEIMEQVA 292
Query: 289 PEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGV 348
P LG T +G+P S A I L++ ++ + E+++++ + G+
Sbjct: 293 P------------LGPAYQAGTMAGNPASMASGIACLEVLQQEGLYEKLDELGATLEKGI 340
Query: 349 K-AFSDSPIIGEIRGTGLILGTEFADN---------KSPNEPFPPEWGIGAYFGAQCEKH 398
+ I + L F N + E F G +F
Sbjct: 341 LEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMF------GKFF------K 388
Query: 399 GMLVRVSGDNIMMSPP------FI---MSPEEVDELISKYGKALKA 435
ML G N+ P F+ + E+++ I G+A A
Sbjct: 389 LMLQE--GVNL---APSKYEAWFLTTEHTKEDIEYTIEAVGRAFAA 429
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* Length = 427 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 2e-29
Identities = 88/357 (24%), Positives = 151/357 (42%), Gaps = 74/357 (20%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTA-LGGSEPRLVAAATAQLNT-----LPFYH 69
P+V ++ + +Y +DV+G +Y+D G W A G + P ++ A + P
Sbjct: 35 PIVFDRVKDAYAWDVDGNRYID-YVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAP--- 90
Query: 70 SFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 129
LA+ + + + + V F NSG+EA +++ + K
Sbjct: 91 ------CALENVLAEMVNDAVPS--IEMVRFVNSGTEACMAVLRI------MRAYTGRDK 136
Query: 130 FIARQKSYHG---STLIAASLSGLPALHQKFDLP-APFVLHTDCPHYWRYAHPGETEEEY 185
I + YHG L+ A SG+ LP +P V P +T
Sbjct: 137 IIKFEGCYHGHADMFLVKAG-SGVAT----LGLPSSPGV-------------PKKTTANT 178
Query: 186 STRLANNLEDL--ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIA 243
T N+LE + + E P IA I EP++G G I P A + E ++ + ++D L +
Sbjct: 179 LTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVF 238
Query: 244 DEVICAFGRLGTMFGC--DKYSIKPDLVSFAKALSSAYMPIGAI--------LVSPEVSE 293
DEVI F R+ +G +K+ + PDL + K + +P+GA LV+P
Sbjct: 239 DEVITGF-RIA--YGGVQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAP---- 290
Query: 294 VIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA 350
G T SG+P++ I+ L++ ++ E +++I + DG+ A
Sbjct: 291 --------AGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLA 339
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} Length = 429 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 5e-29
Identities = 85/357 (23%), Positives = 142/357 (39%), Gaps = 74/357 (20%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTA-LGGSEPRLVAAATAQLNT-----LPFYH 69
PL IE+++G+Y++DV+GK Y+D G W LG + P + A + P
Sbjct: 36 PLFIERADGAYLFDVDGKAYID-YVGSWGPMILGHNHPAIRQAVIEAVERGLSFGAP--- 91
Query: 70 SFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 129
T+ + +A+ + ++ M V NSG+EA + ++L A G + K
Sbjct: 92 ------TEMEVKMAQLVTDLVPT--MDMVRMVNSGTEATMSAIRL------ARGYTGRDK 137
Query: 130 FIARQKSYHG---STLIAASLSGLPALHQKFDLP-APFVLHTDCPHYWRYAHPGETEEEY 185
I + YHG L+ A SG P +P V P + +
Sbjct: 138 IIKFEGCYHGHADCLLVKAG-SGALT----LGQPNSPGV-------------PTDFAKHT 179
Query: 186 STRLANNLEDL--ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIA 243
T N+L + ++ P+ +A I EPV G IPP + ++A+ ++ L I
Sbjct: 180 LTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLII 239
Query: 244 DEVICAFGRLGTMFGC--DKYSIKPDLVSFAKALSSAYMPIGAI--------LVSPEVSE 293
DEV+ F R+ D Y + PDL K + MP+GA ++P
Sbjct: 240 DEVMTGF-RVA--LAGAQDYYHVIPDLTCLGKIIGGG-MPVGAFGGRREVMNALAP---- 291
Query: 294 VIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA 350
G T SG+P++ A L + + E + ++ G++
Sbjct: 292 --------TGPVYQAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRH 340
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} PDB: 3bs8_A* Length = 429 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 9e-28
Identities = 95/354 (26%), Positives = 146/354 (41%), Gaps = 69/354 (19%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTA-LGGSEPRLVAA--ATAQLNTLPFYHSFW 72
PL +E+ +GS VYD++G +Y+D W G + R+V A A A+ T SF
Sbjct: 36 PLFMERGKGSKVYDIDGNEYID-YVLSWGPLIHGHANDRVVEALKAVAERGT-----SF- 88
Query: 73 NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIA 132
T+ LAK ++E + + V NSG+EA + ++L A G + K +
Sbjct: 89 GAPTEIENKLAKLVIERVPS--IEIVRMVNSGTEATMSALRL------ARGYTGRNKILK 140
Query: 133 RQKSYHG---STLIAASLSGLPALHQKFDLP-APFVLHTDCPHYWRYAHPGETEEEYSTR 188
YHG S LI A SG+ LP +P V P + T
Sbjct: 141 FIGCYHGHGDSLLIKAG-SGVAT----LGLPDSPGV-------------PEGVAKNTITV 182
Query: 189 LANNLEDL--ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEV 246
N+LE + ++ + IA I EPV G GV+PP + E ++ V ++ L I DEV
Sbjct: 183 AYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEV 242
Query: 247 ICAFGRLGTMFGC--DKYSIKPDLVSFAKALSSAYMPIGAI--------LVSPEVSEVIH 296
+ F R+ + C Y + PDL K + +P+GA V+P
Sbjct: 243 MTGF-RVA--YNCGQGYYGVTPDLTCLGKVIGGG-LPVGAYGGKAEIMRQVAP------- 291
Query: 297 SQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA 350
G T SG+P++ A E L + + A + G++
Sbjct: 292 -----SGPIYQAGTLSGNPLAMAAGYETLVQLTP-ESYVEFERKAEMLEAGLRK 339
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} Length = 424 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 9e-26
Identities = 92/363 (25%), Positives = 145/363 (39%), Gaps = 86/363 (23%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTA-LGGSEPRLVAAATAQLNT-----LPFYH 69
P + + EG+YV+D +G +YLD W LG + P+++A L P
Sbjct: 35 PPFLVRGEGAYVWDADGNRYLD-YVMSWGPLILGHAHPKVLARVRETLERGLTFGAP--- 90
Query: 70 SFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 129
+ + LAK++ + + V F NSG+EA + ++L A G +
Sbjct: 91 ------SPLEVALAKKVKRAYPF--VDLVRFVNSGTEATMSALRL------ARGYTGRPY 136
Query: 130 FIARQKSYHG---STLIAASLSGLPALHQKFDLP------APFVLHTDCPHYWRYAHPGE 180
+ + +YHG L+ A SG +P + T Y
Sbjct: 137 IVKFRGNYHGHADGLLVEAG-SGALT----LGVPSSAGVPEEYAKLTLVLEY-------- 183
Query: 181 TEEEYSTRLANNLEDL--ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYD 238
N+ E L +LK E IAA I EPV+G GV+ P + + + K Y
Sbjct: 184 ----------NDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHE-AKAYG 232
Query: 239 ILFIADEVICAFGRLGTMFGC--DKYSIKPDLVSFAKALSSAYMPIGAI--------LVS 288
+L IADEV+ F RL FG + +KPDLV+ K L +P A V+
Sbjct: 233 VLLIADEVMTGF-RLA--FGGATELLGLKPDLVTLGKILGGG-LPAAAYAGRREIMEKVA 288
Query: 289 PEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIV-EQVNKIAPKFQDG 347
P LG T SG+P++ A + L++ +E + + + + G
Sbjct: 289 P------------LGPVYQAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLGARLEAG 336
Query: 348 VKA 350
+K
Sbjct: 337 LKE 339
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 Length = 467 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 3e-09
Identities = 33/256 (12%), Positives = 72/256 (28%), Gaps = 31/256 (12%)
Query: 95 MAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154
+ + G A + K + + +T L+G A+
Sbjct: 91 YDYIIPAHQGRGAE--NILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAI- 147
Query: 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVI 214
++ ++ W+ L++ I + G + I A ++
Sbjct: 148 ---NIVTEKAFDSETYDDWK-----------GDFDIKKLKENIAQHGADNIVAIVSTVTC 193
Query: 215 GAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF------GRLGTMFGCDKYSIKPDL 268
+ G P + ++V + K++ I + D R + D+
Sbjct: 194 NSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDM 253
Query: 269 VSFAKALS-----SAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIE 323
+A AL+ + IG ++ + E+ TY G +
Sbjct: 254 YKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLA---GRDMA 310
Query: 324 ALKIYKERNIVEQVNK 339
A+ E E+
Sbjct: 311 AMVQGLEEGTEEEYLH 326
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 2e-06
Identities = 50/298 (16%), Positives = 85/298 (28%), Gaps = 94/298 (31%)
Query: 34 KYLD-SLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFW--------NRTTKPSLDL-- 82
KYLD L L + PR ++ + W + SL++
Sbjct: 309 KYLDCRPQDLPREVLTTN-PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 83 AKELLEMFTASKMAKVFFTNSGSEANDTQV-----KLVWYYN---------NALGRPNKK 128
E +MF VF + L+W+ N L +K
Sbjct: 368 PAEYRKMF---DRLSVF-------PPSAHIPTILLSLIWFDVIKSDVMVVVNKL---HKY 414
Query: 129 KFIARQK-----SYHGSTL-IAASLSGLPALHQK----------FDLPAPFVLHTDCPHY 172
+ +Q S L + L ALH+ FD + D Y
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD--QY 472
Query: 173 WRYAHPG------ETEEEYS--TRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPA 224
+ Y+H G E E + + + F+ + +
Sbjct: 473 F-YSHIGHHLKNIEHPERMTLFRMVFLDFR-------------FLEQKIRHDSTAWNASG 518
Query: 225 TYFEKVQAVVKKYDILFIAD------EVICAFG----RLGTMFGCDKYSIKPDLVSFA 272
+ +Q +K Y +I D ++ A ++ C KY+ DL+ A
Sbjct: 519 SILNTLQ-QLKFYK-PYICDNDPKYERLVNAILDFLPKIEENLICSKYT---DLLRIA 571
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 447 | |||
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 100.0 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 100.0 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 100.0 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 100.0 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 100.0 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 100.0 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 100.0 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 100.0 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 100.0 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 100.0 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 100.0 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 100.0 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 100.0 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 100.0 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 100.0 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 100.0 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 100.0 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 100.0 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 100.0 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 100.0 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 100.0 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 100.0 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 100.0 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 100.0 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 100.0 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 100.0 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 100.0 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 100.0 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 100.0 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 100.0 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 100.0 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 100.0 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 100.0 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 100.0 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 100.0 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 100.0 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 100.0 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 100.0 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 100.0 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 100.0 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.98 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.98 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.97 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.97 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.97 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.97 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.97 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.97 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.96 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.96 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.96 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.96 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.96 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.96 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.96 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.96 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.96 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.96 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.96 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.96 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.96 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.96 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.96 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.96 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.96 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.96 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.96 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.95 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.95 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.95 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.95 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.95 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.95 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.95 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.95 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.92 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.95 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.95 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.95 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.95 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.95 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.95 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.95 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.95 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.95 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.95 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.95 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.94 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.94 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.94 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.94 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.94 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.94 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.94 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.94 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.94 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.94 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.94 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.94 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.94 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.94 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.94 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.93 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.93 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.93 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.93 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.93 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.93 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.93 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.93 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.93 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.92 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.92 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.92 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.92 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.92 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.92 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.92 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.92 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.92 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.92 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.91 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.91 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.91 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.91 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.91 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.91 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.91 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.91 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.91 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.91 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.91 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.9 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.9 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.9 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.9 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.9 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.9 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.9 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.9 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.9 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.9 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.9 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.89 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.89 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.89 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.89 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.89 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.89 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.89 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.89 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.88 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.88 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.88 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.88 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.88 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.88 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.88 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.87 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.87 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.87 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.86 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.86 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.86 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.86 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.86 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.86 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.86 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.85 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.85 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.85 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.85 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.85 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.85 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.85 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.85 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.85 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.84 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.84 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.84 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.84 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.83 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.83 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.83 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.83 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.82 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.81 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.81 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.81 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.81 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.8 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.8 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.8 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.8 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.8 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.8 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.79 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.79 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.79 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 99.78 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.77 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.76 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.75 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.75 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.75 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.73 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.73 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.73 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.73 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.72 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.72 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.7 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.7 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.69 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.69 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.69 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.67 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.66 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.62 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.6 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.59 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.59 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.59 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.57 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.55 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.55 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.53 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.48 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.46 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.38 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.09 |
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-82 Score=628.45 Aligned_cols=438 Identities=40% Similarity=0.796 Sum_probs=401.8
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHH
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (447)
.||||+++.......|++|++|+|+||||.|||+||||.+++|++++||+||+|.+|+.++++++...+.+++.++++..
T Consensus 35 ~~h~~t~~~~~~~~~P~vi~rg~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~~~~~~~~~~~~ 114 (473)
T 4e3q_A 35 SLYGFTDMPSLHQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGRMSDQTV 114 (473)
T ss_dssp BCCSSCCHHHHHHHCCEEEEEEETTEEEETTCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCCCCTTEEEHHHH
T ss_pred cCCCCCChhhhccCCCEEEEeeecCEEEeCCCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhcccccccccccCHHHH
Confidence 49999999988888899999999999999999999999999999999999999999999999998766666666788999
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP 160 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 160 (447)
+|+++|++.. +.+.++|+|++||+|||+.|||++|+|+..+|++++.+||.|+++|||++.++++.++.+ ++..+..+
T Consensus 115 ~lAe~L~~~~-p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~-~~~~~~~~ 192 (473)
T 4e3q_A 115 MLSEKLVEVS-PFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKP-YNSVFGLP 192 (473)
T ss_dssp HHHHHHHHHS-SCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCG-GGGGGTCS
T ss_pred HHHHHHHhhC-CCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccc-cccccCCC
Confidence 9999999996 446789999999999999999999999999999999999999999999999999999864 56667777
Q ss_pred CCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCE
Q 013204 161 APFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240 (447)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~ 240 (447)
.+...++++|+.+++..+....+.+...+.+++++.+...+++++|+||+||+++++|+++|+++||++|+++|++||++
T Consensus 193 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gil 272 (473)
T 4e3q_A 193 LPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIP 272 (473)
T ss_dssp CTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCC
T ss_pred CCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceE
Confidence 78888999998888777778888888888899999998888889999999999999999999999999999999999999
Q ss_pred EEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHH
Q 013204 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAV 320 (447)
Q Consensus 241 li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a 320 (447)
||+|||+|||||+|..|+++++|+.||++|++|+++||++|+|++++++++++.+.......+.+.|++||++||++|++
T Consensus 273 LI~DEV~tGfGRtG~~fa~e~~gv~PDi~t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aa 352 (473)
T 4e3q_A 273 VISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAI 352 (473)
T ss_dssp EEEECTTTSSSTTSSSCHHHHTTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHH
T ss_pred EeccCccccCCcccchhHHHhcCCCCChHHhcccccCCCCCcccccccHHHHHHhccccccccccccCCCCCCCcchhhh
Confidence 99999999999999999999999999999999999999899999999999999886533233467899999999999999
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCc
Q 013204 321 AIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGM 400 (447)
Q Consensus 321 a~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 400 (447)
++++|++++++++.+++++++++|++.|+++.+++.+.+++|.|+++++++..+..+..+++........+.+.|+++|+
T Consensus 353 ala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vRG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gl 432 (473)
T 4e3q_A 353 ALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGL 432 (473)
T ss_dssp HHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTE
T ss_pred hhhhhhhhccccHHHHHHHHHHHHHHHHHHHhcCCCeeEEeecceEEEEEEecCccccccccccHHHHHHHHHHHHHCCc
Confidence 99999999999999999999999999999997778889999999999999988777777777666677889999999999
Q ss_pred eEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 013204 401 LVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKATEERV 440 (447)
Q Consensus 401 ~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~ 440 (447)
++.+.|+.+||+||+++|++|||+++++|+++++++..++
T Consensus 433 l~~~~g~~i~l~PPL~it~~eid~~~~~l~~al~~v~ael 472 (473)
T 4e3q_A 433 ICRPLGQSVVLCPPFILTEAQMDEMFDKLEKALDKVFAEV 472 (473)
T ss_dssp ECEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999876654
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-72 Score=554.21 Aligned_cols=401 Identities=26% Similarity=0.467 Sum_probs=343.8
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
..+|+++++++|+||||.|||+||||.+++|++++||+||+|.+|+.++++++.+. .....+++...++++++++..+.
T Consensus 44 ~~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~-~~~~~~~~~~~~lae~L~~~~p~ 122 (456)
T 4atq_A 44 SGVPVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTHT-CFMVTPYEGYVAVTEQLNRLTPG 122 (456)
T ss_dssp CSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCC-TTTTSCCHHHHHHHHHHHHHSSC
T ss_pred CCCCCeEEeeecCEEEeCCCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhccCc-ccCccCcHHHHHHHHHHHHhCCC
Confidence 45799999999999999999999999999999999999999999999999886432 23345788899999999999755
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcc-ccCCCCCCCCcceecCCCC
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPA-LHQKFDLPAPFVLHTDCPH 171 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 171 (447)
...++++|++||+|||+.|||+++.+ +++++||.|+++|||++.++++.++... ++..+....+.+.++|++.
T Consensus 123 ~~~~~v~f~~sGsEA~e~AlklAr~~------t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~ 196 (456)
T 4atq_A 123 DHAKRTVLFNSGAEAVENAVKVARLA------TGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSY 196 (456)
T ss_dssp SSCEEEEEESSHHHHHHHHHHHHHHH------HCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCC
T ss_pred CCCcEEEEeCChHHHHHHHHHHHhhh------hcCCeEEEEecccCCccccccccccCccccccCCCCccccceeccccc
Confidence 56789999999999999999999988 5678999999999999999999887653 4555666667777888877
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCC
Q 013204 172 YWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG 251 (447)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g 251 (447)
.++...+..+..+.....++.+++. .+++++++||+||+++++|.++|+++||++|+++|++||++||+||||||||
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~e~~---~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~G 273 (456)
T 4atq_A 197 PFREENPEITGAEAAKRAITMIEKQ---IGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFC 273 (456)
T ss_dssp GGGCSSTTCCHHHHHHHHHHHHHHH---TCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred ccccCCCcccHHHHHHHHHHHHHHh---hcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccC
Confidence 6665555555444444444444433 3457899999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh
Q 013204 252 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER 331 (447)
Q Consensus 252 ~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~ 331 (447)
|+|+.|+++++|+.||++|+||+++|| +|+|++++++++++.+. ...|++||++||++|++++++|++++++
T Consensus 274 RtG~~~a~e~~gv~PDivt~gK~lggg-~P~~av~~~~~i~~~~~-------~~~~~~Tf~gnpla~aaala~L~~i~~~ 345 (456)
T 4atq_A 274 RTGEWFAVDHEGVVPDIITMAKGIAGG-LPLSAITGRADLLDAVH-------PGGLGGTYGGNPVACAAALAAIDTMEQH 345 (456)
T ss_dssp TTSSSSGGGGTTCCCSEEEECGGGGTT-SSCEEEEEEHHHHTTSC-------TTSSCCSSSSCHHHHHHHHHHHHHHHHT
T ss_pred CccccccccccCCCCchhhhhhcccCc-CCceeeEecHHHHhccc-------ccCCCCCCCCChHHHHhhHHHHHHHhhc
Confidence 999999999999999999999999988 79999999999998875 3468899999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHhHhhc-cC-----CCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee
Q 013204 332 NIVEQVNKIAPKFQDGVKAF-SD-----SPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS 405 (447)
Q Consensus 332 ~~~~~~~~~~~~l~~~L~~l-~~-----~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~ 405 (447)
++.++++++++++++.|+++ .+ ++++.+++|.|+|+++++.++.. .. ........+.+.|+++|+++.++
T Consensus 346 ~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~~-~~---~~~~~~~~v~~~~~~~Gvl~~~~ 421 (456)
T 4atq_A 346 DLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGS-KE---PNAELTKAVAAACLKEGVIILTC 421 (456)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTTS-CC---BCHHHHHHHHHHHHHTTEECEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCCC-CC---cCHHHHHHHHHHHHHCCCEEEec
Confidence 99999999999999999887 33 46789999999999999986532 11 12234667889999999998876
Q ss_pred C---CEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 406 G---DNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 406 g---~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
| +.|||.||+++|+++||+++++|+++++.
T Consensus 422 g~~~~~irl~PpL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 422 GTYGNVIRLLPPLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp CTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 4 67999999999999999999999999875
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-69 Score=542.16 Aligned_cols=435 Identities=31% Similarity=0.588 Sum_probs=378.2
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHH
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (447)
+||||+++......+|+++++++|+++||.|||+||||++++|+++|||+||+|++|+.++++++.++++. .++++...
T Consensus 22 ~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~-~~~~~~~~ 100 (476)
T 3i5t_A 22 ILLPAQEMAKLGKSAQPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPW-YMATSPAA 100 (476)
T ss_dssp BCCTTEEGGGTTTCCCCBEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTT-TCBCHHHH
T ss_pred cccCcccccccccCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcccC-ccCCHHHH
Confidence 59999999887777899999999999999999999999999999999999999999999999886554432 45788999
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP 160 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 160 (447)
++++++++.+ +.+.++++|++||+|||+.||++++.+...+|++++++||+++++|||++.++++.++.+.++..+...
T Consensus 101 ~la~~l~~~~-~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~ 179 (476)
T 3i5t_A 101 RLAEKIATLT-PGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIA 179 (476)
T ss_dssp HHHHHHHTTS-STTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCC
T ss_pred HHHHHHHhcC-CCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCC
Confidence 9999999987 346779999999999999999999999888888888999999999999999999999988888777777
Q ss_pred CCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCE
Q 013204 161 APFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240 (447)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~ 240 (447)
.....++++|..++. ...+.+.+...++++|++++....++++++||+||+++++|.++++++||++|+++|++||++
T Consensus 180 ~~~~~~~~~p~~~~~--~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gil 257 (476)
T 3i5t_A 180 QDRISFLSSPNPRHA--GNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDIL 257 (476)
T ss_dssp CTTEEEECCCCGGGC--TTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCE
T ss_pred CCCcEEeCCCccccc--CCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence 777778887766553 345566777777899999988666578999999999999999999999999999999999999
Q ss_pred EEEehhhcCCCccccccccc-cCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHH
Q 013204 241 FIADEVICAFGRLGTMFGCD-KYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCA 319 (447)
Q Consensus 241 li~DEv~~g~g~~g~~~~~~-~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 319 (447)
||+||||+||||+|..++++ ++++.||++++||++++|++|+|++++++++++.+.......+.+.+++||+++|++++
T Consensus 258 lI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~np~a~a 337 (476)
T 3i5t_A 258 YISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACA 337 (476)
T ss_dssp EEEECTTTTTTTTSSSCHHHHTTCCCCSEEEECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTTTTCHHHHH
T ss_pred EEEEecccCCccccCceeeecccCCCcchhhhhhhhcCCCcCeEEEEECHHHHHHHhcCCcccccccccCCCCcCHHHHH
Confidence 99999999999999988888 99999999999999999878999999999999988643222345678889999999999
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcC
Q 013204 320 VAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHG 399 (447)
Q Consensus 320 aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 399 (447)
+++++|+.++++++.++++++++++++.|+++..++.+..+++.|+++++++.....+..++.........+.+.|+++|
T Consensus 338 Aa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 417 (476)
T 3i5t_A 338 AALANIELMEREGIVDQAREMADYFAAALASLRDLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELG 417 (476)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceeEEEEecCccccccccchhHHHHHHHHHHHHCC
Confidence 99999999888889999999999999999988777888999999999999987643333222211113556888999999
Q ss_pred ceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013204 400 MLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKATEER 439 (447)
Q Consensus 400 i~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 439 (447)
|++.+.|+.+||+||+.+|+++|++++++|+++++++.++
T Consensus 418 v~v~~~g~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~~~ 457 (476)
T 3i5t_A 418 LIVRPLGDLCVISPPLIISRAQIDEMVAIMRQAITEVSAA 457 (476)
T ss_dssp EECEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887754
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-70 Score=544.13 Aligned_cols=432 Identities=38% Similarity=0.730 Sum_probs=375.4
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHH
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (447)
+|+||+++......+|+++++++|+++||.|||+||||++++++++|||+||+|++|+.++++++...++...++++...
T Consensus 23 ~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~ 102 (472)
T 3hmu_A 23 HLHPFSANNALGEEGTRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFKTTHVPAI 102 (472)
T ss_dssp EECTTEEHHHHHHHCCEEEEEEEBTEEEETTCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCSSSSEECHHHH
T ss_pred ccCCcccccccccCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccccccccccCCHHHH
Confidence 59999988766666899999999999999999999999999999999999999999999999886644444456788999
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP 160 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 160 (447)
+|++++++.+ +.+.++|+|++||+|||+.|+++++.++..+|++++++||+++++|||++.++++.++.+.++..+. +
T Consensus 103 ~lae~l~~~~-~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~-~ 180 (472)
T 3hmu_A 103 ALAQKLAELA-PGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSG-L 180 (472)
T ss_dssp HHHHHHHHHS-CTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTC-C
T ss_pred HHHHHHHHhC-CCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccC-C
Confidence 9999999986 3467899999999999999999999988888888889999999999999999999999887777777 6
Q ss_pred CCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCE
Q 013204 161 APFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240 (447)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~ 240 (447)
...+..+++|..++.... .+.+.+...++++|++++....++++++||+||+++++|.++++++||++|+++|++||++
T Consensus 181 ~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gil 259 (472)
T 3hmu_A 181 IPDVHHINQPNWWAEGGD-MDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDIL 259 (472)
T ss_dssp CSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCE
T ss_pred CCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence 666777777664442222 4556677777899999987666678999999999999999999999999999999999999
Q ss_pred EEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHH
Q 013204 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAV 320 (447)
Q Consensus 241 li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a 320 (447)
||+||||+||||+|..++++++++.||+++|||+|+||++|+|++++++++++.+.. +.+.+++||+++|+++++
T Consensus 260 lI~DEv~~gfgr~G~~~a~~~~~v~pdi~t~sK~l~gg~~plG~v~~~~~i~~~~~~-----~~~~~~~t~~~np~a~aA 334 (472)
T 3hmu_A 260 LIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGK-----DEFNHGYTYSGHPVAAAV 334 (472)
T ss_dssp EEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHTT-----SCBCCCCTTTTCHHHHHH
T ss_pred EEEEccccCCcccCccchhHHhCCCCceeeechhhhcCCcceEEEEECHHHHHhccc-----CCccccCCCCCCHHHHHH
Confidence 999999999999999888899999999999999999988899999999999998832 356778899999999999
Q ss_pred HHHHHHHHhhhcHHHHHH-HHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCC-cchHHHHHHHHHHc
Q 013204 321 AIEALKIYKERNIVEQVN-KIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPE-WGIGAYFGAQCEKH 398 (447)
Q Consensus 321 a~a~l~~~~~~~~~~~~~-~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~ 398 (447)
++++|+.++++++.++++ ++++++++.|+++..++.+..+++.|+++++++..+..+..++... ......+.+.|+++
T Consensus 335 a~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 414 (472)
T 3hmu_A 335 ALENLRILEEENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFAN 414 (472)
T ss_dssp HHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGGGGSTTEEEEEEETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceEEEEEecCccccccccchhHHHHHHHHHHHHHC
Confidence 999999988888999999 9999999999888667888999999999999987543333333222 22356688999999
Q ss_pred CceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 013204 399 GMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKATEERV 440 (447)
Q Consensus 399 Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~ 440 (447)
||++.++|+.+||+||+.+|+++|++++++|+++++++.+++
T Consensus 415 Gv~v~~~g~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~~~~~ 456 (472)
T 3hmu_A 415 NLIMRHVGDRMIISPPLVITPAEIDEMFVRIRKSLDEAQAEI 456 (472)
T ss_dssp TBCCEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999989999999999999999999999999999887655
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-66 Score=519.69 Aligned_cols=436 Identities=38% Similarity=0.707 Sum_probs=362.8
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHH
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (447)
+||||+++......+|+++++++|++++|.||++||||++++++++|||+||+|++|+.++++++...++...++++...
T Consensus 18 ~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~ 97 (459)
T 4a6r_A 18 HLHPFTDTASLNQAGARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVV 97 (459)
T ss_dssp ----------------CCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTTSSSCCHHHH
T ss_pred ccCCccccccccccCCeeEEEeecCEEEECCCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccccccCCHHHH
Confidence 69999998877777899999999999999999999999999999999999999999999999886644444456888999
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP 160 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 160 (447)
++++++++.+ +.+.++|+|++||++|++.|+++++.++..+|++++++||+++++|||++.++++.++.+.++..+...
T Consensus 98 ~la~~l~~~~-~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 176 (459)
T 4a6r_A 98 ELSSLLAEVT-PAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLP 176 (459)
T ss_dssp HHHHHHHHHS-CTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCS
T ss_pred HHHHHHHHhC-CCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCC
Confidence 9999999986 456789999999999999999999998888888888999999999999999999999988877777766
Q ss_pred CCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCE
Q 013204 161 APFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240 (447)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~ 240 (447)
......+++|..++.... .+.+.+...++++|++++....++++++|++||+++++|.+++++++|++|+++|++||++
T Consensus 177 ~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~l 255 (459)
T 4a6r_A 177 IPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVL 255 (459)
T ss_dssp CSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCE
T ss_pred CCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence 666777777664442222 4556677777899999987666678999999999999999999999999999999999999
Q ss_pred EEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHH
Q 013204 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAV 320 (447)
Q Consensus 241 li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a 320 (447)
||+||||+||||+|..++++++++.||+++|||+|+||++|+|++++++++++.+... +.+.+++||+++|+++++
T Consensus 256 lI~DEv~~g~gr~G~~~~~~~~~~~pdi~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~----~~~~~~~t~~~~~~~~aa 331 (459)
T 4a6r_A 256 LVADEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAG----GDFNHGFTYSGHPVCAAV 331 (459)
T ss_dssp EEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHH----CTTHHHHHHCSCHHHHHH
T ss_pred EEEeccccCCCcccccchHhhcCCCCCeeehhhhhcCCCCCccceeeCHHHHHHhhcC----CCcccCCCCCCCHHHHHH
Confidence 9999999999999988888889999999999999999888999999999999988632 234566789999999999
Q ss_pred HHHHHHHHhhhcHHHHHH-HHHHHHHHhH-hhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc
Q 013204 321 AIEALKIYKERNIVEQVN-KIAPKFQDGV-KAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH 398 (447)
Q Consensus 321 a~a~l~~~~~~~~~~~~~-~~~~~l~~~L-~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 398 (447)
++++|+.++++++.++++ ++++++++.| +.+..++.+..+++.|+++++++..+..+..++.........+.+.|+++
T Consensus 332 a~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 411 (459)
T 4a6r_A 332 AHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRN 411 (459)
T ss_dssp HHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCccccccccchHHHHHHHHHHHHHC
Confidence 999999988888999999 9999999999 77777788899999999999998765444444444444466788999999
Q ss_pred CceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 013204 399 GMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKATEERVKE 442 (447)
Q Consensus 399 Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~~~ 442 (447)
||++.++|+.+||+||+.+|+++|++++++|+++++++.++...
T Consensus 412 Gv~v~~~g~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~~~~ 455 (459)
T 4a6r_A 412 NLIMRACGDHIVSAPPLVMTRAEVDEMLAVAERCLEEFEQTLKA 455 (459)
T ss_dssp TEECEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEecCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998999999999999999999999999999988766543
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-66 Score=517.52 Aligned_cols=437 Identities=40% Similarity=0.740 Sum_probs=376.9
Q ss_pred CCCCCCcCccC--CCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChH
Q 013204 1 MLAPFTAGWQS--TDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKP 78 (447)
Q Consensus 1 ~~~~~~~~~~~--~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~ 78 (447)
+||||+++... ..++|+++++++|++++|.||++||||++++++++|||+||+|++|+.++++++...++...++++.
T Consensus 17 ~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~ 96 (460)
T 3gju_A 17 FFHPSTHMGTHARGESPTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHGTEA 96 (460)
T ss_dssp CCCTTSCHHHHHHTCSCCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCCCTTCCCHH
T ss_pred cccCccccccccccCCCceEEEEeeccEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccccccCCHH
Confidence 69999987554 3456799999999999999999999999999999999999999999999998765444444567888
Q ss_pred HHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCC
Q 013204 79 SLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFD 158 (447)
Q Consensus 79 ~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~ 158 (447)
..++++++++.+ +.+.++++|++||+||++.|+++++.++..+|++++++||+++++|||++.++++.++.+.++..+.
T Consensus 97 ~~~la~~l~~~~-~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~ 175 (460)
T 3gju_A 97 SITLAKMIIDRA-PKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFD 175 (460)
T ss_dssp HHHHHHHHHHHS-CTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTT
T ss_pred HHHHHHHHHhhC-CCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccC
Confidence 999999999985 3467899999999999999999999988888888889999999999999999999999888887777
Q ss_pred CCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcC
Q 013204 159 LPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYD 238 (447)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g 238 (447)
.....+..++.|..++.+..+.+.+.+...++++|++++...+++++++|++||+++++|.++++++||++|+++|++||
T Consensus 176 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~ 255 (460)
T 3gju_A 176 LPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYD 255 (460)
T ss_dssp CSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTT
T ss_pred CCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 77677778887766665544566677777788999999876655689999999999999999999999999999999999
Q ss_pred CEEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHH
Q 013204 239 ILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSC 318 (447)
Q Consensus 239 ~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 318 (447)
++||+||||+||||+|..++++++++.||+++|||+|++|++|+|++++++++++.+.......+.+.+++|++++|+++
T Consensus 256 ~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~ 335 (460)
T 3gju_A 256 VLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICV 335 (460)
T ss_dssp CEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCCTTTTCHHHH
T ss_pred CEEEEeccccCCCcccccchHhhcCCCCCeeeeehhhcCCCCCeEEEEECHHHHHHHhcccccccccccCCCCCCCHHHH
Confidence 99999999999999998888889999999999999999987899999999999998853111112556778999999999
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHH
Q 013204 319 AVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEK 397 (447)
Q Consensus 319 ~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 397 (447)
++++++|+.++++++.++++++.+++++.|.++ .+++.+..+++.|.++++++........++.........+.+.|++
T Consensus 336 aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 415 (460)
T 3gju_A 336 AAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAA 415 (460)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeeEEEEEEEccCccccccccchHHHHHHHHHHHHH
Confidence 999999999888889999999999999999655 6778888999999999999876544444444333456678899999
Q ss_pred cCceEEeeC--CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 398 HGMLVRVSG--DNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 398 ~Gi~~~~~g--~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
+||++.+.+ +.+||+||+.+|+++|++++++|+++++++.+
T Consensus 416 ~Gv~v~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 458 (460)
T 3gju_A 416 SGVIGRAMPQGDILGFAPPLCLTREQADIVVSKTADAVKSVFA 458 (460)
T ss_dssp TTEECEECSSSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCeEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999886 78999999999999999999999999987653
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-66 Score=506.25 Aligned_cols=379 Identities=19% Similarity=0.293 Sum_probs=317.4
Q ss_pred CCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC
Q 013204 12 TDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT 91 (447)
Q Consensus 12 ~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (447)
-.++|+++++++|+||||.|||+||||++++|+++|||+||+|++|+.++++++... ..++....++++++++.++
T Consensus 66 ~~~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~~~----~~~~~~~~~lae~l~~~~p 141 (454)
T 4ao9_A 66 YAPFPLTIARGEGAALWDADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGINL----TGHNLLEGRLARLICERFP 141 (454)
T ss_dssp CSSCCCEEEEEETTEEEETTCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCSCC----CSEESSHHHHHHHHHHHST
T ss_pred cCCCCccEEEeecCEEEECCCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCCCc----cCCcHHHHHHHHHHHHhCC
Confidence 356799999999999999999999999999999999999999999999999875332 2345667899999999974
Q ss_pred cCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC
Q 013204 92 ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH 171 (447)
Q Consensus 92 ~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
+.++++|++||+|||+.|||+++.+ +++++||.|+++|||++......++...+. . .....++.
T Consensus 142 --~~~~v~f~~SGsEA~e~AiklAr~~------tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~------~-~~~~~p~n- 205 (454)
T 4ao9_A 142 --QIEQLRFTNSGTEANLMALTAALHF------TGRRKIVVFSGGYHGGVLGFGARPSPTTVP------F-DFLVLPYN- 205 (454)
T ss_dssp --TCSEEEEESSHHHHHHHHHHHHHHH------HTCCEEEEETTCBCSTTCBBSSSBCTTSCC------S-EEEEECTT-
T ss_pred --CCCEEEEeCchHHHHHHHHHHHHhc------ccCCeEEEEeCCcCCccccccccccCccCC------C-CcccCCCc-
Confidence 5789999999999999999999988 467899999999999987665544322111 0 11122221
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCC
Q 013204 172 YWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG 251 (447)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g 251 (447)
+++.+++.+.+.. +++++||+||+++++|+++|+++||++|+++|++||++||+|||+| |
T Consensus 206 -----------------d~~~l~~~l~~~~-~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~t--G 265 (454)
T 4ao9_A 206 -----------------DAQTARAQIERHG-PEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMT--S 265 (454)
T ss_dssp -----------------CHHHHHHHHHHTG-GGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTG--G
T ss_pred -----------------hHHHHHHHHhhcC-CceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCc--C
Confidence 1477888887644 4799999999999999999999999999999999999999999999 4
Q ss_pred ccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh
Q 013204 252 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER 331 (447)
Q Consensus 252 ~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~ 331 (447)
|+|..|+++++|++||++|++|+++|| +|+|++++++++++.+.. ..+.+.|++||++||++|++++++|++++++
T Consensus 266 R~G~~~a~e~~gv~PDi~t~gK~lggG-~Piga~~~~~ei~~~~~~---~~~~~~h~~T~~gnPla~AAala~L~~l~~~ 341 (454)
T 4ao9_A 266 RLAPHGLANKLGIRSDLTTLGKYIGGG-MSFGAFGGRADVMALFDP---RTGPLAHSGTFNNNVMTMAAGYAGLTKLFTP 341 (454)
T ss_dssp GGSTTCHHHHHTCCCSEEEEEGGGGTT-SSCEEEEECHHHHGGGCT---TTCSCCCCCTTTTCHHHHHHHHHHHHHTSCH
T ss_pred CCccccchhccCCCCcEEEeccccCCC-CcceeeeeHHHHHHHHhh---ccCCccccCCCCCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999 699999999999998853 2346678899999999999999999999989
Q ss_pred cHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCC--CCCCCcchHHHHHHHHHHcCceEEeeCCE
Q 013204 332 NIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNE--PFPPEWGIGAYFGAQCEKHGMLVRVSGDN 408 (447)
Q Consensus 332 ~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~Gi~~~~~g~~ 408 (447)
++.+++++++++|++.|+++ .+++++.++++.|++++++|.+.+.... ....+......+...|+++||++.|.+
T Consensus 342 ~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~p~~-- 419 (454)
T 4ao9_A 342 EAAGALAERGEALRARLNALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSSPRG-- 419 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECCTTC--
T ss_pred ChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEcCCC--
Confidence 99999999999999999998 6778889999999999999875432211 111223345567888999999988765
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 409 IMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 409 iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
++.+++.+|++|||+++++|++++.++.
T Consensus 420 -~~~~s~~~T~~dId~~l~al~~~l~~~~ 447 (454)
T 4ao9_A 420 -FVVLSLPLTDADIDRYVAAIGSFIGGHG 447 (454)
T ss_dssp -EEECCTTCCHHHHHHHHHHHHHHHHHSG
T ss_pred -CEEEeCCCCHHHHHHHHHHHHHHHHhcc
Confidence 3456677999999999999999998753
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-66 Score=545.38 Aligned_cols=431 Identities=21% Similarity=0.296 Sum_probs=343.4
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCc--EEEeCCCC----EEEecCCccccccCCCC-CHHHHHHHHHHHhcCCcccccCc
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGS--YVYDVNGK----KYLDSLAGLWCTALGGS-EPRLVAAATAQLNTLPFYHSFWN 73 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~--~~~d~dg~----~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~~~~~ 73 (447)
+||||+++.......|++|++++|. ++||.||| +|||++|++|++++||+ ||+|.+|+.++++++.+. .+.+
T Consensus 342 ~whp~t~~~~~~~~~p~~i~~a~G~g~~l~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~h~-~~~~ 420 (831)
T 4a0g_A 342 FWWPFTQHKLVHQETVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHV-MFPE 420 (831)
T ss_dssp BCCTTCCGGGCCGGGCEEEEEEETTEEEEEEHHHHSEEEEEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHSSC-CCTT
T ss_pred ccCCccCcccccCCCCeEEEEeeccceEEEECCCCccchheeeecccHhhcCCCCCCCHHHHHHHHHHHhhcccc-cccc
Confidence 6999999987766789999999995 99999999 99999999999999999 999999999999886543 2234
Q ss_pred CCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHH-HHHHHhcCCC--------CcceEEEEcCCCccchhhh
Q 013204 74 RTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV-WYYNNALGRP--------NKKKFIARQKSYHGSTLIA 144 (447)
Q Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~-~~~~~~~~~~--------~~~~vi~~~~~yhg~~~~~ 144 (447)
..+++..+|+++|++..+....++|+|++||+||||.|||++ ++|+..+|.+ ++.+||.++++|||.+.++
T Consensus 421 ~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~ga 500 (831)
T 4a0g_A 421 NVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGA 500 (831)
T ss_dssp EECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceee
Confidence 578999999999999974333789999999999999999999 6777766642 5789999999999999999
Q ss_pred hcccCCccccCCC--------C----CCC----CcceecCCCCcccCCCCCC----C----------hhHHHHHHHHHHH
Q 013204 145 ASLSGLPALHQKF--------D----LPA----PFVLHTDCPHYWRYAHPGE----T----------EEEYSTRLANNLE 194 (447)
Q Consensus 145 ~~~~~~~~~~~~~--------~----~~~----~~~~~~~~~~~~~~~~~~~----~----------~~~~~~~~~~~le 194 (447)
+++++...++..+ . .+. ..+.++++|+.++.....+ + .+.....++++|+
T Consensus 501 ls~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le 580 (831)
T 4a0g_A 501 MEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLS 580 (831)
T ss_dssp HHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHH
T ss_pred eeccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHH
Confidence 9999876655411 0 110 1223455555443221111 1 1123345567788
Q ss_pred HHHHh----hCCCcEEEEEEccc-cCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee
Q 013204 195 DLILK----EGPETIAAFIAEPV-IGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV 269 (447)
Q Consensus 195 ~~l~~----~~~~~~a~vi~epv-~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v 269 (447)
+.+.. .+++++++||+||+ +++||+++++++||++|+++|++||++||+|||++||||+|+.|+++++|+.||++
T Consensus 581 ~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDii 660 (831)
T 4a0g_A 581 KHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIA 660 (831)
T ss_dssp HHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCCSEE
T ss_pred HHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCCcEE
Confidence 87753 34578999999997 99999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH---
Q 013204 270 SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQD--- 346 (447)
Q Consensus 270 ~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~--- 346 (447)
|+||+|+||++|+|++++++++++.+.... +.+.+.|++||++||++|++++++|++++++++.+++.++++++++
T Consensus 661 tlsK~L~gG~~Plgav~~~~~i~~~~~~~~-~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~ 739 (831)
T 4a0g_A 661 CFAKLLTGGMVPLAVTLATDAVFDSFSGDS-KLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWD 739 (831)
T ss_dssp EECGGGGTTSSCCEEEEECHHHHHTTCSSC-GGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSC
T ss_pred EEecccccCccCcEEEEECHHHHHHHhccc-ccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 999999999889999999999999886421 2345678999999999999999999999887777777666665543
Q ss_pred -hH-hhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeCCEEEEecCCCCCHHHHHH
Q 013204 347 -GV-KAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDE 424 (447)
Q Consensus 347 -~L-~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g~~iR~~~~~~~t~e~i~~ 424 (447)
.+ +.+.+++.+.++++.|+++++++..+... ..+ ....+..+.+.|+++||++.+.++.|||+||+.+|+++|++
T Consensus 740 ~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~-~~~--~~~~a~~~~~~l~e~Gv~v~p~g~~lrl~pp~~~t~e~id~ 816 (831)
T 4a0g_A 740 EELVQQISSHSAVQRVVVIGTLFALELKADASN-SGY--ASLYAKSLLIMLREDGIFTRPLGNVIYLMCGPCTSPEICRR 816 (831)
T ss_dssp HHHHHHHHHSTTEEEEEEETTEEEEEEC------------CHHHHHHHHHHHHTTEECCCBTTEEEEECCTTCCHHHHHH
T ss_pred HHHHHHHhhCCCceeEeecccEEEEEEecCccc-ccc--chHHHHHHHHHHHHCCcEEEecCCEEEEECCCCCCHHHHHH
Confidence 22 33345688999999999999999754211 111 11235568889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 013204 425 LISKYGKALKAT 436 (447)
Q Consensus 425 ~~~~l~~~l~~~ 436 (447)
++++|+++++++
T Consensus 817 ~~~~l~~~l~~l 828 (831)
T 4a0g_A 817 LLTKLYKRLGEF 828 (831)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHHHh
Confidence 999999988654
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-63 Score=496.50 Aligned_cols=431 Identities=31% Similarity=0.578 Sum_probs=343.2
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHH
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (447)
+||||+++... ...|+++++++|++++|.||++||||++++++++|||+||+|.+|+.++++++..++ ...++++...
T Consensus 13 ~~~~~~~~~~~-~~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~-~~~~~~~~~~ 90 (448)
T 3dod_A 13 LWLPFTQMKDY-DENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHST-LLGMTNVPAT 90 (448)
T ss_dssp BCCTTCCHHHH-HHSCCEEEEEEBTEEEETTSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCC-CSSSEEHHHH
T ss_pred ccccccccccc-cCCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCcc-ccccCCHHHH
Confidence 69999876544 447899999999999999999999999999999999999999999999998764432 2345678889
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP 160 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 160 (447)
++++++++.+ +.+.++++|++||++|++.|+++++.++..+|.+++++||+++++|||++..++..++.+.++..+...
T Consensus 91 ~la~~l~~~~-~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 169 (448)
T 3dod_A 91 QLAETLIDIS-PKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPL 169 (448)
T ss_dssp HHHHHHHHHS-CTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC--------------------------
T ss_pred HHHHHHHHhC-CCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCC
Confidence 9999999986 346689999999999999999999987666676668999999999999999999988877766666655
Q ss_pred CCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEcccc-CCCCCccCChhHHHHHHHHHHhcCC
Q 013204 161 APFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVI-GAGGVIPPPATYFEKVQAVVKKYDI 239 (447)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~-~~~G~~~~~~~~l~~l~~l~~~~g~ 239 (447)
......++.++.++.+ +.+.+.+.++++++|++++... ++++++|++||++ +++|.++++++||++|+++|++||+
T Consensus 170 ~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~le~~l~~~-~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~ 246 (448)
T 3dod_A 170 MFESYKAPIPYVYRSE--SGDPDECRDQCLRELAQLLEEH-HEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDV 246 (448)
T ss_dssp ---CEEECCCCCTTSS--SCCHHHHHHHHHHHHHHHHHHH-GGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTC
T ss_pred CCCceEeCCCccccCC--ccchhhhhHHHHHHHHHHHHhC-CCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCC
Confidence 5566777877766655 5566778888999999998732 3578999999998 9999999999999999999999999
Q ss_pred EEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHH
Q 013204 240 LFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCA 319 (447)
Q Consensus 240 ~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 319 (447)
+||+||||+|||++|..++++++++.||+++|||++++|++|+|++++++++++.+.......+.+.+++|++++|++++
T Consensus 247 ~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a 326 (448)
T 3dod_A 247 LMIVDEVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCA 326 (448)
T ss_dssp EEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTTCHHHHH
T ss_pred EEEEeccccCCCcccchhhhhhcCCCCCEEEecccccCCcCceEEEEECHHHHHHhhhccccCCcccccCCCCcCHHHHH
Confidence 99999999999999998888999999999999999998745999999999999988631111223567789999999999
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcC
Q 013204 320 VAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHG 399 (447)
Q Consensus 320 aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 399 (447)
+++++|+.++++++.++++++++++++.|+++..++.+..+++.|.++++.+........++.........+.+.|+++|
T Consensus 327 aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 406 (448)
T 3dod_A 327 VALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELG 406 (448)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeeEEEEEEEccCcccccccchhhHHHHHHHHHHHHCC
Confidence 99999998888889999999999999999887667888889999999999987654333333332223466889999999
Q ss_pred ceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 400 MLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 400 i~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
|++.+.++.+|++|++.+|+++|++++++|+++++++.
T Consensus 407 v~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 444 (448)
T 3dod_A 407 MLTRPLGDVIAFLPPLASTAEELSEMVAIMKQAIHEVT 444 (448)
T ss_dssp EECCEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cEEeccCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999989999999999999999999999999998764
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-62 Score=489.01 Aligned_cols=409 Identities=24% Similarity=0.460 Sum_probs=343.5
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeC-CCC--EEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCCh
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDV-NGK--KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTK 77 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~-dg~--~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~ 77 (447)
+||||+++... ...|+++++++|+++||. ||| +||||++++|+++|||+||+|++|+.+++++....+ +..++++
T Consensus 41 ~~~~~~~~~~~-~~~~~~~~~~~G~~l~d~~dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~-~~~~~~~ 118 (457)
T 3tfu_A 41 LWHPYSSIGRE-AVSPVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVM-FGGLTHE 118 (457)
T ss_dssp BCCTTCCSSCC-SSCCEEEEEEEBTEEEEEETTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCSCCC-SSSEECH
T ss_pred cCccccccccc-CCCCceEEeeecCEEEEccCCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHhccCcc-ccccCCH
Confidence 69999987322 457899999999999999 999 999999999999999999999999999998764332 2234778
Q ss_pred HHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccC-CccccCC
Q 013204 78 PSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSG-LPALHQK 156 (447)
Q Consensus 78 ~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~-~~~~~~~ 156 (447)
...++++++++.+ +.+.++++|++||+||++.|+++++.++..+|.+++++||+++++|||++.++++.++ .+.++..
T Consensus 119 ~~~~L~e~la~~~-~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 197 (457)
T 3tfu_A 119 PAARLAKLLVDIT-PAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSL 197 (457)
T ss_dssp HHHHHHHHHHHHS-STTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC------
T ss_pred HHHHHHHHHHHhC-CCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCccccccc
Confidence 8999999999997 3467799999999999999999999888877877888999999999999999998854 3444444
Q ss_pred CCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEcc-ccCCCCCccCChhHHHHHHHHHH
Q 013204 157 FDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEP-VIGAGGVIPPPATYFEKVQAVVK 235 (447)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~ep-v~~~~G~~~~~~~~l~~l~~l~~ 235 (447)
+.........++.|.. .+..+++++|++.+... ++++++|++|| +++++|.+++++++|++|+++|+
T Consensus 198 ~~~~~~~~~~~~~p~~-----------~~~~~d~~~le~~l~~~-~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~ 265 (457)
T 3tfu_A 198 WTDVLAAQVFAPQVPR-----------DYDPAYSAAFEAQLAQH-AGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICR 265 (457)
T ss_dssp ----CCCCEEECCCCS-----------SCCHHHHHHHHHHHHHH-GGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHH
T ss_pred ccCCCCCceEecCCCc-----------ccCHHHHHHHHHHHHhC-CCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHH
Confidence 4433334444444321 12334578888888754 35789999999 99999999999999999999999
Q ss_pred hcCCEEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcH
Q 013204 236 KYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHP 315 (447)
Q Consensus 236 ~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~ 315 (447)
+||++||+||||+|||++|..++++++++.||+++|||+|+||++|+|++++++++++.+... ..+.+.+++||++||
T Consensus 266 ~~gillI~DEv~~g~gr~G~~~a~~~~~~~pdiit~sK~l~gG~~~lG~v~~~~~i~~~~~~~--~~~~~~~~~t~~~n~ 343 (457)
T 3tfu_A 266 RYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAG--AAGALMHGPTFMANP 343 (457)
T ss_dssp HHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHHS--SSCSCCCCCTTTTCH
T ss_pred HcCCEEEEEcCccCCccccchhHhHhcCCCceEEEEChhhhCCCcceEEEEEcHHHHHHhhcc--CCCceeEecCCCcCH
Confidence 999999999999999999998888999999999999999999978999999999999988531 123557888999999
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHH
Q 013204 316 VSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQC 395 (447)
Q Consensus 316 ~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l 395 (447)
+++++++++|+.++++++.++++++++++++.|+++..++.+..+++.|+++++++.+.. ....+.+.|
T Consensus 344 ~a~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~l~~~~-----------~~~~~~~~l 412 (457)
T 3tfu_A 344 LACAVSVASVELLLGQDWRTRITELAAGLTAGLDTARALPAVTDVRVCGAIGVIECDRPV-----------DLAVATPAA 412 (457)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGGGSTTEEEEEECSSCEEEEESSCC-----------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCCeeeeecCCeEEEEEECCcc-----------cHHHHHHHH
Confidence 999999999999888889999999999999999988666778889999999999886532 145688999
Q ss_pred HHcCceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 396 EKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 396 ~~~Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
+++||++.+.++.+|++||+.+|+++|++++++|+++++++.
T Consensus 413 ~~~Gv~v~~~~~~lRi~p~~~~t~eei~~~l~~L~~~l~~~~ 454 (457)
T 3tfu_A 413 LDRGVWLRPFRNLVYAMPPYICTPAEITQITSAMVEVARLVG 454 (457)
T ss_dssp HHTTEECCCBTTEEEECCCTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred HHCCeEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999998754
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-60 Score=472.78 Aligned_cols=413 Identities=33% Similarity=0.633 Sum_probs=346.3
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
.+|+++++++|++++|.||++||||++++++++|||+||+|++|+.++++++.+ ....++++...++++++++.++ .
T Consensus 30 ~~p~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~--~~~~~~~~~~~~la~~l~~~~~-~ 106 (452)
T 3n5m_A 30 NSTTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSY--FPMSQSHEPAIKLAEKLNEWLG-G 106 (452)
T ss_dssp GGCCEEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCC--CCTTSEEHHHHHHHHHHHHHHT-S
T ss_pred CCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCC--cccccCCHHHHHHHHHHHHhCC-C
Confidence 578999999999999999999999999999999999999999999999987644 2224577889999999999874 3
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcc
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYW 173 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
+.+ ++|++||+||++.|+++++.++..+|++++++||+++++|||++.+++..++.+.++..+.........++.++.+
T Consensus 107 ~~~-v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (452)
T 3n5m_A 107 EYV-IFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCY 185 (452)
T ss_dssp CEE-EEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTT
T ss_pred Cce-EEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccc
Confidence 444 9999999999999999999886666666789999999999999999999998887776666555566677776655
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccc-cCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc
Q 013204 174 RYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPV-IGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252 (447)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv-~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~ 252 (447)
+.+.. .+.+.+...++++|++.+...+++++++|++||+ ++ +|.++|++++|++|+++|++||++||+||||+|||+
T Consensus 186 ~~~~~-~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~ 263 (452)
T 3n5m_A 186 RMPGI-ERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGR 263 (452)
T ss_dssp TSTTT-TTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred cCccC-CchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCc
Confidence 54322 1223344455788998887444567999999999 89 999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhc
Q 013204 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERN 332 (447)
Q Consensus 253 ~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~ 332 (447)
+|..++++++++.||+++|||++++|++|+|++++++++++.+... ...+.+.+++|++++|+++++++++|+.+++++
T Consensus 264 ~g~~~~~~~~~~~~di~t~sK~l~~G~~~ig~~~~~~~i~~~~~~~-~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~ 342 (452)
T 3n5m_A 264 TGKAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGK-GEYEFFRHINTFGGNPAACALALKNLEIIENEN 342 (452)
T ss_dssp TSSSSGGGGTTCCCSEEEECGGGGTTSSCCEEEEEEHHHHGGGCSS-STTCSCCCCCSSTTCHHHHHHHHHHHHHHHHTT
T ss_pred ccccchhhhcCCCCCEEeecccccCCCcceEEEEECHHHHHHHhhc-cCCCCccccCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 9998889999999999999999999768999999999999988531 012356678899999999999999999988888
Q ss_pred HHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-----
Q 013204 333 IVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG----- 406 (447)
Q Consensus 333 ~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g----- 406 (447)
+.++++++++++++.|+++ ..++.+..+++.|.++++++.....+..+++ ......+.+.|+++||++.+.+
T Consensus 343 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~--~~~~~~~~~~l~~~Gv~~~~~~~~~~~ 420 (452)
T 3n5m_A 343 LIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPID--NDKIASVVNACKEKGLIIGRNGMTTAG 420 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSSCEEEEEEEETTTTEECC--HHHHHHHHHHHHHTTEECEECTTSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCCcccCCCC--HHHHHHHHHHHHHCCcEEeecCcccCC
Confidence 9999999999999999887 6778888999999999998865433222221 1123468888999999999875
Q ss_pred --CEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 407 --DNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 407 --~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+.+||+|++.+|+++|++++++|++++++
T Consensus 421 ~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 421 YNNILTLAPPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 67999999999999999999999998753
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-59 Score=465.92 Aligned_cols=404 Identities=25% Similarity=0.439 Sum_probs=334.7
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
..+|+++++++|+++||.||++||||++++++++|||+||+|++|+.++++++..+ +...++++...++++++++.++.
T Consensus 41 ~~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~-~~~~~~~~~~~~la~~l~~~~~~ 119 (451)
T 3oks_A 41 TTMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHT-CFMVTPYEGYVAVCEQLNRLTPV 119 (451)
T ss_dssp CSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCSCC-TTTTSCCHHHHHHHHHHHHHSSC
T ss_pred CCCCceEEEeecCEEEECCCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhcccc-cCCccCCHHHHHHHHHHHHhCCc
Confidence 36899999999999999999999999999999999999999999999999876432 22345788899999999999753
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCc-cccCCCCCCCCcceecCCCC
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLP-ALHQKFDLPAPFVLHTDCPH 171 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 171 (447)
...++++|++||+||++.|+++++.+ +++++||+++++|||++.+++..++.+ .++..+......+..++++.
T Consensus 120 ~~~~~v~~~~sGseA~~~Alk~a~~~------~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (451)
T 3oks_A 120 RGDKRSALFNSGSEAVENAVKIARSH------THKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSY 193 (451)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHHHHH------HCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCC
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHh------cCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCc
Confidence 34679999999999999999999876 457899999999999999999988864 66666665556666777764
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHh-hCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCC
Q 013204 172 YWRYAHPGETEEEYSTRLANNLEDLILK-EGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250 (447)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~le~~l~~-~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~ 250 (447)
.++.+.++.+.+.+...+++.+++.+.+ ..++++++|++||+++++|.++++++|+++|+++|++||++||+||||+||
T Consensus 194 ~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~ 273 (451)
T 3oks_A 194 PFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGF 273 (451)
T ss_dssp HHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred cccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCC
Confidence 3332111122122233345555555543 234689999999999999999999999999999999999999999999999
Q ss_pred CccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh
Q 013204 251 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE 330 (447)
Q Consensus 251 g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~ 330 (447)
|++|..++++++++.||+++|||++++| +|+|++++++++++.+. ...+.+|++++|+++++++++|+.+++
T Consensus 274 g~~g~~~~~~~~~~~pdi~t~sK~l~~G-~~iG~v~~~~~~~~~~~-------~~~~~~t~~~~~~~~aaa~aal~~~~~ 345 (451)
T 3oks_A 274 ARTGAMFACEHEGIDPDLIVTAKGIAGG-LPLSAVTGRAEIMDSPH-------VSGLGGTYGGNPIACAAALATIETIES 345 (451)
T ss_dssp TTTSSSSGGGGGTCCCSEEEECGGGGTT-SSCEEEEEEHHHHTCSC-------TTSBCCSSSSCHHHHHHHHHHHHHHHH
T ss_pred CccccchhhhhcCCCCCeeeehhhhhCC-cceEEEEECHHHHhhhc-------CCCcCCCCCCCHHHHHHHHHHHHHHhh
Confidence 9999988899999999999999999997 89999999999988775 335778999999999999999998888
Q ss_pred hcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC---
Q 013204 331 RNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--- 406 (447)
Q Consensus 331 ~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g--- 406 (447)
+++.++++++++++++.|+++ ..++.+..+++.|.++++.+.... ...+ .......+.+.|+++||++.+++
T Consensus 346 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~~~~~~-~~~~---~~~~~~~~~~~l~~~Gv~v~~~~~~~ 421 (451)
T 3oks_A 346 EGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAG-TTEP---DADLTKALCAGAHAAGVIVLSCGTYG 421 (451)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEBSTT-SCCB---CHHHHHHHHHHHHHTTEECEEECTTS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEeeEEEEEEEecCc-cCCC---CHHHHHHHHHHHHhCCcEEecCCCCC
Confidence 889999999999999999887 567888899999999999886411 1110 11235568899999999999875
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 407 DNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 407 ~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+.+||+|++.+|+++|++++++|++++++
T Consensus 422 ~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 422 NVVRFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 67999999999999999999999998863
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-59 Score=464.06 Aligned_cols=402 Identities=27% Similarity=0.463 Sum_probs=334.6
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
..+|+++++++|+++||.||++||||++++++++|||+||+|++|+.++++++..+ +...++++...++++++++.++.
T Consensus 44 ~~~p~~~~~~~G~~v~d~~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~-~~~~~~~~~~~~la~~l~~~~~~ 122 (453)
T 4ffc_A 44 STAPVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHT-CFMVTPYEQYVQVAELLNALTPG 122 (453)
T ss_dssp CSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCC-TTTTSCCHHHHHHHHHHHHHSSC
T ss_pred CCCCceEEeeecCEEEeCCCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhcccc-ccCcCCCHHHHHHHHHHHHhCCC
Confidence 36899999999999999999999999999999999999999999999999876432 22245788899999999999743
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCc-cccCCCCCCCCcceecCCCC
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLP-ALHQKFDLPAPFVLHTDCPH 171 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 171 (447)
...++++|++||+||++.|+++++.+ +++++||+++++|||++.+++..++.+ .++..+......+..++++.
T Consensus 123 ~~~~~v~~~~sGseA~~~alk~a~~~------~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (453)
T 4ffc_A 123 DHDKRTALFNSGAEAVENAIKVARLA------TGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASY 196 (453)
T ss_dssp SSCEEEEEESSHHHHHHHHHHHHHHH------HCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCC
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHHHh------cCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCc
Confidence 34679999999999999999999876 457899999999999999999988865 66666665555666777765
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCC
Q 013204 172 YWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG 251 (447)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g 251 (447)
.++.+. +.+.+.....+++.|++.+ .++++++||+||+++++|.++++++||++|+++|++||++||+||||+|||
T Consensus 197 ~~~~~~-g~~~~~~~~~~~~~l~~~i---~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g 272 (453)
T 4ffc_A 197 PLRDEP-GLTGEEAARRAISRIETQI---GAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFA 272 (453)
T ss_dssp TTTSCT-TCCHHHHHHHHHHHHHHHT---CGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred cccCcc-ccchHHHHHHHHHHHHHhc---CCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCC
Confidence 443221 2222222233345555443 346799999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh
Q 013204 252 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER 331 (447)
Q Consensus 252 ~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~ 331 (447)
++|..++++++++.||+++|||++++| +|+|++++++++++.+. ...+.+|++++|+++++++++|+.++++
T Consensus 273 ~~g~~~a~~~~~~~pdi~t~sK~~~~G-~~~G~~~~~~~i~~~~~-------~~~~~~t~~~~~~~~aaa~aal~~~~~~ 344 (453)
T 4ffc_A 273 RTGAWFASEHEGIVPDIVTMAKGIAGG-MPLSAVTGRAELMDAVY-------AGGLGGTYGGNPVTCAAAVAALGVMREL 344 (453)
T ss_dssp TTSSSSTHHHHTCCCSEEEECGGGGTT-SSCEEEEEEHHHHTTSC-------TTSSCCSSSSCHHHHHHHHHHHHHHHHT
T ss_pred cccccchhhhcCCCcchHhhhhhhcCC-cCeEEEEECHHHHhhhc-------ccCcCCCCCcCHHHHHHHHHHHHHhhhh
Confidence 999888889999999999999999997 89999999999988875 3356789999999999999999988888
Q ss_pred cHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC---C
Q 013204 332 NIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG---D 407 (447)
Q Consensus 332 ~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g---~ 407 (447)
++.++++++++++++.|+++ ..++.+..+++.|.++++++.... ... ........+.+.|+++||++.+++ +
T Consensus 345 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~---~~~~~~~~~~~~l~~~Gv~v~~~~~~~~ 420 (453)
T 4ffc_A 345 DLPARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVKPG-TLE---PDAALTKSIAAEALSQGVLILTCGTFGN 420 (453)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEETTEEEEEEBCTT-SCC---BCHHHHHHHHHHHHHTTEECCEECTTSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeceEEEEEEecCc-ccC---CCHHHHHHHHHHHHhCCCEEecCCCCCC
Confidence 89999999999999999887 567888889999999999886411 111 011235668889999999998875 6
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 408 NIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 408 ~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
.+||+|++.+|+++|++++++|+++++++.
T Consensus 421 ~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 450 (453)
T 4ffc_A 421 VIRLLPPLVIGDDLLDEGITALSDIIRAKA 450 (453)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999998754
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-57 Score=448.35 Aligned_cols=412 Identities=31% Similarity=0.548 Sum_probs=321.4
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHH
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (447)
+|+|| ..+|+++.+++|++++|.||++||||+++++.++|||+||+|++++.+++++...++. ..++++...
T Consensus 4 ~~~~~-------~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~ 75 (430)
T 3i4j_A 4 VFYRS-------SKPYPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHG-SQFSSDVLE 75 (430)
T ss_dssp BCCSS-------SSCCCEEEEEEBTEEEETTSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCT-TTCEEHHHH
T ss_pred cccCC-------CCCCceEEeeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhcccccc-cccCCHHHH
Confidence 58888 3578999999999999999999999999999999999999999999999987654332 245678889
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP 160 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 160 (447)
++++++++.+ +.+.++++|++||+||++.|+++++.+...+|+++++.||+++++|||++..++..++.+.+...+...
T Consensus 76 ~l~~~la~~~-~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 154 (430)
T 3i4j_A 76 EYAGRLARFV-GLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPL 154 (430)
T ss_dssp HHHHHHHHHT-TCTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC------------------------
T ss_pred HHHHHHHHhC-CCCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCc
Confidence 9999999986 346789999999999999999999888777787778999999999999998888877765555444333
Q ss_pred CC--cceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccC-CCCCccCChhHHHHHHHHHHhc
Q 013204 161 AP--FVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIG-AGGVIPPPATYFEKVQAVVKKY 237 (447)
Q Consensus 161 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~-~~G~~~~~~~~l~~l~~l~~~~ 237 (447)
.. .+..+++++.++. ...++++|++.+...+++++++|++||+++ ++|.++++++++++|+++|++|
T Consensus 155 ~~~~~~~~~~~~~~~~~----------~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~ 224 (430)
T 3i4j_A 155 MRPEAWPKLPKPDPARN----------GAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEA 224 (430)
T ss_dssp -CGGGSCEECCCCTTSC----------HHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHH
T ss_pred CCCCCceEcCCCcccch----------hhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHc
Confidence 33 3445555443221 344568888888765556789999999999 9999999999999999999999
Q ss_pred CCEEEEehhhcCCCccccccccccC-CCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHH
Q 013204 238 DILFIADEVICAFGRLGTMFGCDKY-SIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPV 316 (447)
Q Consensus 238 g~~li~DEv~~g~g~~g~~~~~~~~-~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 316 (447)
|++||+||+|+|||++|..++++.+ ++.||+++|||++++|++|+|++++++++++.+.... +.+.+.+|++.+++
T Consensus 225 ~~~li~DEv~~~~~~~g~~~~~~~~~~~~~di~t~sK~l~~G~~r~G~~~~~~~i~~~~~~~~---~~~~~~~t~~~~~~ 301 (430)
T 3i4j_A 225 GIIFIADEVMSGMGRCGSPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGS---GAFMHGFTYAGHPV 301 (430)
T ss_dssp TCEEEEECTTTTTTTTSSSSGGGGTTTCCCSEEEECGGGTTTSSCCEEEEECHHHHHHHHHTT---CBCCCCCTTTTCHH
T ss_pred CCEEEEechhhCCCcccchhhhhhhcCCCCcEEEEcccccCCccccEEEEECHHHHHHHhccC---CcccccCCCCCCHH
Confidence 9999999999999999988888888 9999999999999987689999999999999887421 23567789999999
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHH
Q 013204 317 SCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQC 395 (447)
Q Consensus 317 ~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l 395 (447)
++++++++|+.++++++.++++++.+++++.|+++ ..++.+..+++.|.++.+.+.+.. ...++.. ......+.+.|
T Consensus 302 ~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~l 379 (430)
T 3i4j_A 302 SVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLGDLA-TGQAFET-PGIASRIGAAA 379 (430)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEC--------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEecccc-ccCCCcc-HHHHHHHHHHH
Confidence 99999999998887889999999999999999887 467778889999999999886321 1111100 01145688899
Q ss_pred HHcCceEEee--------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 396 EKHGMLVRVS--------GDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 396 ~~~Gi~~~~~--------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+++||++.++ ++.+||+|++.+|+++|++++++|+++++++
T Consensus 380 ~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 380 LKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDGLLALLAGALEDV 428 (430)
T ss_dssp HHTTEECC-----------CEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCEEEecccccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999876 4679999999999999999999999998764
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-56 Score=444.17 Aligned_cols=427 Identities=32% Similarity=0.533 Sum_probs=342.5
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHH
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (447)
+|+||+++.... ..|+++.+++|+++||.||++|+|+++++|++++||+||+|++|+.+++++.. .+.+..++.+...
T Consensus 19 ~~~~~~~~~~~~-~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~ 96 (449)
T 3a8u_X 19 HWMPYTANRNFL-RDPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLD-YSPGFQYGHPLSF 96 (449)
T ss_dssp SCCTTSCHHHHH-HSCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCS-CCCSSSCCCHHHH
T ss_pred cccccccccccc-CCCceEEeeecCEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCC-CccccccCCHHHH
Confidence 599999885432 36899999999999999999999999999999999999999999999998754 2222145777889
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP 160 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 160 (447)
++++++++++ +.+.++++|++||++|++.|+++++.++..+|++++++||+++++|||++..++..++.+.++..+...
T Consensus 97 ~l~~~la~~~-~~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~ 175 (449)
T 3a8u_X 97 QLAEKITDLT-PGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQP 175 (449)
T ss_dssp HHHHHHHTTS-STTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCC
T ss_pred HHHHHHHHhC-CCCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCC
Confidence 9999999886 346789999999999999999998877766676677899999999999988777777765555555544
Q ss_pred CCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCE
Q 013204 161 APFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240 (447)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~ 240 (447)
...+..+++|..++....+.+.+.+...++++|++.+....++++++|++||+++++|.++++++++++|+++|++||++
T Consensus 176 ~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~ 255 (449)
T 3a8u_X 176 MQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNIL 255 (449)
T ss_dssp SCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCE
T ss_pred CCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCE
Confidence 44455565554332211111223344555788998887544357899999999998998999999999999999999999
Q ss_pred EEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccC--CCCccCcCCCCCCcHHHH
Q 013204 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN--TLGSFSHGFTYSGHPVSC 318 (447)
Q Consensus 241 li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~t~~~~~~~~ 318 (447)
||+||+|+|||++|..+.++.+++.||++++||++++|++|+|++++++++++.+..... ....+.+.+|++++++++
T Consensus 256 li~Dev~~~~g~~g~~~~~~~~~~~~di~s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~ 335 (449)
T 3a8u_X 256 LVFDEVITGFGRTGSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVAC 335 (449)
T ss_dssp EEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHH
T ss_pred EEEeccccCccccCcchhhhhcCCCCCEEEEcccccCCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHH
Confidence 999999999999987777788888999999999999876899999999999988864211 112234567899999999
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc
Q 013204 319 AVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH 398 (447)
Q Consensus 319 ~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 398 (447)
+++.++|+.++++++.++++++++++++.|+++..++.+..+++.|.++.+++........ .....+.+.|+++
T Consensus 336 aa~~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~------~~~~~~~~~l~~~ 409 (449)
T 3a8u_X 336 AAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDAI------VRPFEAGMALWKA 409 (449)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBSS------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCccccc------ccHHHHHHHHHHC
Confidence 9999999988877889999999999999998875567777778889999998864321100 0122478888899
Q ss_pred CceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 399 GMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 399 Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
||++.++++.+|++|++.+|+++|++++++|+++++++
T Consensus 410 Gv~v~~~g~~iRis~~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 410 GFYVRFGGDTLQFGPTFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp TEECEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CcEEecCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 99999988889999999999999999999999988653
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-54 Score=427.25 Aligned_cols=383 Identities=30% Similarity=0.485 Sum_probs=300.4
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
.+|+++.+++|+++||.||++||||++++++++|||+||+|.+|+.+++++....+. ..+.+...++++++++++
T Consensus 46 ~~~~~~~~~~g~~~~d~~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~~~~--~~~~~~~~~l~~~la~~~--- 120 (433)
T 1z7d_A 46 PIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSR--AFFSVPLGICERYLTNLL--- 120 (433)
T ss_dssp CEEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCT--TSEEHHHHHHHHHHHHHH---
T ss_pred CCCceEEeeecCEEEECCCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCCccC--CcCCHHHHHHHHHHHhhc---
Confidence 358889999999999999999999999999999999999999999999987543322 236678899999999987
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHH-hcC-CCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNN-ALG-RPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH 171 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~-~~~-~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
+.++++|++||++|++.|+++++.+.. .+| .+++++||+++++|||++..++..++.+.++..+.+....+..+++.
T Consensus 121 g~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~- 199 (433)
T 1z7d_A 121 GYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYD- 199 (433)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTT-
T ss_pred CCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCCC-
Confidence 467999999999999999999875432 122 23458999999999999887777666544443333222223333332
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCC
Q 013204 172 YWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG 251 (447)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g 251 (447)
++++|++.+. .+++++|++||+++++|.++++++++++|+++|++||++||+||+|+|||
T Consensus 200 -----------------d~~~le~~l~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 259 (433)
T 1z7d_A 200 -----------------DLEALEEELK---DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLG 259 (433)
T ss_dssp -----------------CHHHHHHHHT---STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred -----------------CHHHHHHHhC---CCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCC
Confidence 1477888774 24689999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh
Q 013204 252 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER 331 (447)
Q Consensus 252 ~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~ 331 (447)
++|..++++.+++.||++++||++++|++|+|++++++++++.+.. ..+.+||+++|+++++++++|+.++++
T Consensus 260 ~~g~~~~~~~~~~~~di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~-------~~~~~t~~~~~~~~aaa~aal~~~~~~ 332 (433)
T 1z7d_A 260 RTGKLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKP-------GEHGSTYGGNPLAASICVEALNVLINE 332 (433)
T ss_dssp TTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCT-------TCCCCTTTTCHHHHHHHHHHHHHHHHT
T ss_pred cCCcchhhHhcCCCCCEEEECccccCCCCCeEEEEECHHHHhhhcc-------ccccccCCCCHHHHHHHHHHHHHHHhc
Confidence 9998888888899999999999999775799999999999887742 246678999999999999999988877
Q ss_pred cHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-CCEE
Q 013204 332 NIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-GDNI 409 (447)
Q Consensus 332 ~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-g~~i 409 (447)
++.++++++++++++.|+++ .+++.+..+++.|.++++++.... . ....+.+.|+++||++.++ ++.+
T Consensus 333 ~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~g~~~~i~~~~~~-~---------~~~~~~~~l~~~Gv~v~~~~~~~i 402 (433)
T 1z7d_A 333 KLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNEL-V---------NVLDICLKLKENGLITRDVHDKTI 402 (433)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTT-C---------CHHHHHHHHHHTTEECCEETTTEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeeeeEEEEEEccCh-h---------HHHHHHHHHHHCCeEEecCCCCEE
Confidence 88999999999999999887 467777788899999999886431 0 1456888999999999987 4789
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013204 410 MMSPPFIMSPEEVDELISKYGKALKATEER 439 (447)
Q Consensus 410 R~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 439 (447)
|++|++.+|+++|++++++|+++++++.++
T Consensus 403 Ri~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 432 (433)
T 1z7d_A 403 RLTPPLCITKEQLDECTEIIVKTVKFFDER 432 (433)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHHHC--
T ss_pred EEECCcCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999876544
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-54 Score=425.17 Aligned_cols=379 Identities=27% Similarity=0.456 Sum_probs=314.0
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
.+|+++.+++|+++||.||++||||++++++++|||+||+|++++.+++++....+. ..+.+...++++++++++
T Consensus 57 ~~~~~~~~~~G~~~~d~~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~~~~--~~~~~~~~~l~~~la~~~--- 131 (439)
T 2oat_A 57 PLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSR--AFYNNVLGEYEEYITKLF--- 131 (439)
T ss_dssp CCSCEEEEEEBTEEEETTCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCCCT--TSEESSHHHHHHHHHHHH---
T ss_pred CCCeeEEeeecCEEEECCCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCcccC--ccCCHHHHHHHHHHHHhc---
Confidence 468999999999999999999999999999999999999999999999987543322 234567889999999987
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHh-cC-CCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNA-LG-RPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH 171 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~-~~-~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
+.++++|++||++|++.|+++++.+... +| .+++++||+++++|||++..++..++.+.++..+.+....+..+++.+
T Consensus 132 g~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~d 211 (439)
T 2oat_A 132 NYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYND 211 (439)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECSSC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCCCC
Confidence 4679999999999999999998764321 22 234579999999999998888777765544444433323333343321
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCC
Q 013204 172 YWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG 251 (447)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g 251 (447)
+++|++.+. .+++++|++||+++++|.++++++++++|+++|++||++||+||+|+|||
T Consensus 212 ------------------~~~le~~l~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g 270 (439)
T 2oat_A 212 ------------------LPALERALQ---DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLA 270 (439)
T ss_dssp ------------------HHHHHHHTT---STTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred ------------------HHHHHHHhC---CCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCc
Confidence 477888774 24689999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh
Q 013204 252 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER 331 (447)
Q Consensus 252 ~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~ 331 (447)
++|..++++.+++.||++++||++++|++|+|++++++++++.+. ...+.+||+++|++++++.++|+.++++
T Consensus 271 ~~g~~~~~~~~~~~~Di~t~sK~l~~G~~~~G~v~~~~~~~~~l~-------~~~~~~t~~~~~~~~aaa~aal~~~~~~ 343 (439)
T 2oat_A 271 RTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIK-------PGEHGSTYGGNPLGCRVAIAALEVLEEE 343 (439)
T ss_dssp TTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSC-------TTSSCCSSTTCHHHHHHHHHHHHHHHHT
T ss_pred cCCcchhHHHhCCCCcEEEecccccCCCCCeEEEEECHHHHhccC-------CCCcccCCCcCHHHHHHHHHHHHHHhhh
Confidence 999888888899999999999999987579999999999888774 2246678999999999999999988877
Q ss_pred cHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEE
Q 013204 332 NIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIM 410 (447)
Q Consensus 332 ~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR 410 (447)
++.++++++++++++.|+++ +++.+..+++.|.++++++...... ....+.+.|+++||++.+.+ +.+|
T Consensus 344 ~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~g~~~~v~l~~~~~~---------~~~~l~~~l~~~Gv~v~~~~~~~iR 413 (439)
T 2oat_A 344 NLAENADKLGIILRNELMKL-PSDVVTAVRGKGLLNAIVIKETKDW---------DAWKVCLRLRDNGLLAKPTHGDIIR 413 (439)
T ss_dssp THHHHHHHHHHHHHHHHTTS-CTTTEEEEEEETTEEEEEECCCSSC---------CHHHHHHHHHHTTEECCBSSSSEEE
T ss_pred hHHHHHHHHHHHHHHHHHHh-cCCCcEEEEeeeeEEEEEEecCccH---------HHHHHHHHHHHCCeEEecCCCCEEE
Confidence 88999999999999999887 5666667888999999988643100 14568889999999999864 6799
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 411 MSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 411 ~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
++|++.+|+++|++++++|++++++
T Consensus 414 i~~~~~~t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 414 FAPPLVIKEDELRESIEIINKTILS 438 (439)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EECccCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998754
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-53 Score=421.97 Aligned_cols=386 Identities=24% Similarity=0.362 Sum_probs=310.8
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
.+|+++++++|+++||.|||+||||++++++++|||+||+|.+|+.+++++... ++.+++...++++++++.++
T Consensus 36 ~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~----~~~~~~~~~~l~~~la~~~~-- 109 (434)
T 3l44_A 36 GAPIAMERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITTAAENGVL----YGTPTALEVKFAKMLKEAMP-- 109 (434)
T ss_dssp SCCCCEEEEEBTEEEETTCCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCSC----CSSCCHHHHHHHHHHHHHCT--
T ss_pred CCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCcC----CCCCCHHHHHHHHHHHHhCC--
Confidence 689999999999999999999999999999999999999999999999987421 24578889999999999974
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCC----CCC---Cccee
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFD----LPA---PFVLH 166 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~----~~~---~~~~~ 166 (447)
+.++++|++||+||++.|+++++.+ +++++||+++++|||++..++..++......... .+. .....
T Consensus 110 ~~~~v~~~~sGsea~~~ai~~a~~~------~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 183 (434)
T 3l44_A 110 ALDKVRFVNSGTEAVMTTIRVARAY------TGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVIT 183 (434)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHH------HCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEE
T ss_pred CCCEEEEeCchHHHHHHHHHHHHHh------hCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEe
Confidence 6789999999999999999998866 3568999999999999988887776432211100 000 01111
Q ss_pred cCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehh
Q 013204 167 TDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEV 246 (447)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv 246 (447)
+++ +++++|++++.... +++++|++||+++++|.++++++++++|+++|++||++||+||+
T Consensus 184 ~~~------------------~d~~~le~~l~~~~-~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv 244 (434)
T 3l44_A 184 VPF------------------NNVETLKEALDKWG-HEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEV 244 (434)
T ss_dssp ECT------------------TCHHHHHHHHHHHG-GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECT
T ss_pred cCc------------------ccHHHHHHHHHhCC-CCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 111 12477888876532 47899999999999999999999999999999999999999999
Q ss_pred hcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHH
Q 013204 247 ICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALK 326 (447)
Q Consensus 247 ~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~ 326 (447)
|+|| ++|..++++++++.||++++||++++| +|+|++++++++++.+... +.+.+++|++++++++++++++|+
T Consensus 245 ~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G-~~iG~~~~~~~i~~~~~~~----~~~~~~~t~~~~~~a~aaa~aal~ 318 (434)
T 3l44_A 245 ITAF-RFMYGGAQDLLGVTPDLTALGKVIGGG-LPIGAYGGKKEIMEQVAPL----GPAYQAGTMAGNPASMASGIACLE 318 (434)
T ss_dssp TTTT-TSSSSCHHHHHTCCCSEEEEEGGGGTT-SSCEEEEECHHHHTTBTTT----SSBCCCCTTTTCHHHHHHHHHHHH
T ss_pred ccce-eccccHHHHHcCCCCCeeehhhhhcCC-cCeeeEEEcHHHHHhhccC----CCcccCCCCCcCHHHHHHHHHHHH
Confidence 9999 999888888899999999999999977 8999999999999887531 234577899999999999999999
Q ss_pred HHhhhcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCC--CCCCcchHHHHHHHHHHcCceEE
Q 013204 327 IYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEP--FPPEWGIGAYFGAQCEKHGMLVR 403 (447)
Q Consensus 327 ~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~Gi~~~ 403 (447)
.++++++.++++++++++++.|+++ ..++.+..+++.|.++.+.+......... ..........+.+.|+++||++.
T Consensus 319 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~ 398 (434)
T 3l44_A 319 VLQQEGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLA 398 (434)
T ss_dssp HHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECC
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEe
Confidence 8877889999999999999999887 45677778899999999988543211000 00011123568888999999999
Q ss_pred eeC-CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 404 VSG-DNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 404 ~~g-~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
+++ ..+|++ +.+|+++|++++++|+++++++++
T Consensus 399 ~~~~~~~rl~--~~~t~e~i~~~l~~l~~~l~~~~~ 432 (434)
T 3l44_A 399 PSKYEAWFLT--TEHTKEDIEYTIEAVGRAFAALAD 432 (434)
T ss_dssp SSTTCCEECC--TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCcEEEe--cccCHHHHHHHHHHHHHHHHHHHh
Confidence 876 458885 799999999999999999987754
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-53 Score=416.04 Aligned_cols=376 Identities=31% Similarity=0.512 Sum_probs=320.6
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
..+|+++.+++|++++|.||++||||+++++.++|||+||++.+++.+++++..+.++ ..+.+...++++++++.+
T Consensus 16 ~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~la~~~-- 91 (395)
T 3nx3_A 16 KRFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSN--LYYNENIAAAAKNLAKAS-- 91 (395)
T ss_dssp GSCSCBEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCCT--TSBCHHHHHHHHHHHHHH--
T ss_pred CCCCceEEeeeeeEEEECCCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhcccccc--ccCCHHHHHHHHHHHHhc--
Confidence 4578999999999999999999999999999999999999999999999987544332 346788999999999987
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCc
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHY 172 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
+.++++|++||++|++.|+++++.+....| +++++||+++++|||++..+...++.+.+...+.........+++++
T Consensus 92 -~~~~v~~~~gg~ea~~~al~~~~~~~~~~g-~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d- 168 (395)
T 3nx3_A 92 -ALERVFFTNSGTESIEGAMKTARKYAFNKG-VKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYND- 168 (395)
T ss_dssp -TCSEEEEESSHHHHHHHHHHHHHHHHHHTT-CTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTTC-
T ss_pred -CCCeEEEeCCHHHHHHHHHHHHHHHhhccC-CCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCCC-
Confidence 367999999999999999999887655555 45689999999999999999888887666555443333344444322
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc
Q 013204 173 WRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252 (447)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~ 252 (447)
+++|++.+. +++++|++||+++++|.++++++++++|+++|++||++||+||+|+|||+
T Consensus 169 -----------------~~~l~~~l~----~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~ 227 (395)
T 3nx3_A 169 -----------------ISSVEKLVN----EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGR 227 (395)
T ss_dssp -----------------HHHHHTTCC----TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred -----------------HHHHHHhcc----CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCc
Confidence 367776663 56899999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCeeeecccCCCcccceeEEEeChhH-HHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh
Q 013204 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEV-SEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER 331 (447)
Q Consensus 253 ~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~ 331 (447)
+|..++.+.+++.||++++||++++| +|+|++++++++ ++.+. ...++.++..++++++++.++++.++.+
T Consensus 228 ~g~~~~~~~~~~~~d~~t~sK~~~~G-~~~G~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~aa~aal~~~~~~ 299 (395)
T 3nx3_A 228 SGKFFAYEHAQILPDIMTSAKALGCG-LSVGAFVINQKVASNSLE-------AGDHGSTYGGNPLVCAGVNAVFEIFKEE 299 (395)
T ss_dssp TSSSSGGGGGTCCCSEEEECGGGTTT-SCCEEEEECHHHHHHHSC-------TTCCSSCBSCCHHHHHHHHHHHHHHHHT
T ss_pred CCcchhHHhcCCCCCEEEecccccCC-CceEEEEEchhhhhhhcC-------CcccCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 99888888899999999999999987 899999999998 77775 3346678999999999999999988778
Q ss_pred cHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEE
Q 013204 332 NIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNI 409 (447)
Q Consensus 332 ~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~i 409 (447)
++.++++++.+++++.|+++ ..++.+..+++.|.++.+.+.+.. ....+.+.|+++||++.+++ +.+
T Consensus 300 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----------~~~~~~~~l~~~Gi~v~~~~~~~i 368 (395)
T 3nx3_A 300 KILENVNKLTPYLEQSLDELINEFDFCKKRKGLGFMQGLSLDKSV-----------KVAKVIQKCQENALLLISCGENDL 368 (395)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEECTTS-----------CHHHHHHHHHHTTEECEEETTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeEEEEEEEEeCCcc-----------hHHHHHHHHHHCCCEEecCCCCEE
Confidence 88999999999999999886 456777788899999999886532 14568889999999999885 679
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 410 MMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 410 R~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
||+|++.+|++++++++++|++++++
T Consensus 369 Ri~~~~~~t~e~i~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 369 RFLPPLILQKEHIDEMSEKLRKALKS 394 (395)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998763
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-52 Score=418.04 Aligned_cols=397 Identities=23% Similarity=0.406 Sum_probs=318.0
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
.+|+++++++|++++|.||++|+||++++++++|||+||++.+++.+++++...+ +...++++...++++++++.++ .
T Consensus 24 ~~~~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~~~~~~~~~~~l~~~la~~~~-~ 101 (439)
T 3dxv_A 24 FFPLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGA-TILSASNAPAVTLAERLLASFP-G 101 (439)
T ss_dssp SSCCEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCSCS-CSSSSEEHHHHHHHHHHHHTTT-C
T ss_pred CCCceEEEeeeCEEEeCCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCc-cccccCCHHHHHHHHHHHHhCC-C
Confidence 4799999999999999999999999999999999999999999999999876332 2335577889999999999863 3
Q ss_pred CC-CeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcc--ccCCCCCCCCcceecCCC
Q 013204 94 KM-AKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPA--LHQKFDLPAPFVLHTDCP 170 (447)
Q Consensus 94 ~~-~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 170 (447)
+. ++++|++||++|++.|+++++.+ .++++||+++++|||++..++..++... ++..+......+..++++
T Consensus 102 ~~~~~v~~~~ggsea~~~al~~~~~~------~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (439)
T 3dxv_A 102 EGTHKIWFGHSGSDANEAAYRAIVKA------TGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYR 175 (439)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHHH------HSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSS
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHH------hCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCC
Confidence 45 69999999999999999998755 3457899999999999998888777544 444333222222333333
Q ss_pred CcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCC
Q 013204 171 HYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250 (447)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~ 250 (447)
+.+. .... ..++++|++++....++++++|++||+++++|.+.++++++++|+++|++||++||+||+|+||
T Consensus 176 ~~~~----~~~~----~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~ 247 (439)
T 3dxv_A 176 PYRN----DPTG----DAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGL 247 (439)
T ss_dssp CBTT----BTTS----HHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCT
T ss_pred cccc----cccH----HHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 2111 1111 1146888888854445679999999999999999999999999999999999999999999999
Q ss_pred CccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh
Q 013204 251 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE 330 (447)
Q Consensus 251 g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~ 330 (447)
|++|..++.+.+++.||+++|||++++| +|+|++++++++++.+. ...+.+++ .+++++++++++++.+++
T Consensus 248 g~~g~~~~~~~~~~~~di~s~sK~~~~G-~riG~~~~~~~~~~~~~-------~~~~~~t~-~~~~~~~aa~aal~~~~~ 318 (439)
T 3dxv_A 248 ARSGRLHCFEHEGFVPDILVLGKGLGGG-LPLSAVIAPAEILDCAS-------AFAMQTLH-GNPISAAAGLAVLETIDR 318 (439)
T ss_dssp TTTSSSSGGGGTTCCCSEEEECGGGGTT-SCCEEEEEEHHHHTSCS-------SSSCCTTT-TCHHHHHHHHHHHHHHHH
T ss_pred CcCchhhHHHhcCCCCCEEEEcchhcCC-cceEEEEECHHHHhhhc-------CCCcCCCc-ccHHHHHHHHHHHHHHHh
Confidence 9999878888999999999999999987 69999999999988775 22456788 999999999999998877
Q ss_pred hcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC---
Q 013204 331 RNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--- 406 (447)
Q Consensus 331 ~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g--- 406 (447)
+++.++++++.+++++.|+++ ..++.+..+++.|.++++.+........+ .......+.+.|+++||++.+++
T Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~Gv~v~~~~~~~ 395 (439)
T 3dxv_A 319 DDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREP---ARAETAKLIYRAYQLGLVVYYVGMNG 395 (439)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEE---CHHHHHHHHHHHHHHTEECEEESTTS
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCC---CHHHHHHHHHHHHHCCcEEeecCCCC
Confidence 888999999999999999887 45677888899999999888543211110 11124568888999999999886
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 407 DNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 407 ~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
+.+|++|++.+|+++|++++++|+++++++.+
T Consensus 396 ~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 427 (439)
T 3dxv_A 396 NVLEFTPPLTITETDIHKALDLLDRAFSELSA 427 (439)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHHHHHHTGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 67999999999999999999999999987643
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-52 Score=413.27 Aligned_cols=402 Identities=26% Similarity=0.482 Sum_probs=320.3
Q ss_pred CCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCC
Q 013204 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASK 94 (447)
Q Consensus 15 ~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 94 (447)
+|+++.+++|+++||.||++|+||+++.++.+|||+||+|++++.+++++.... ..+++++...++++++++.++ .+
T Consensus 25 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~la~~~~-~~ 101 (433)
T 1zod_A 25 EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHL--FSEMLSRPVVDLATRLANITP-PG 101 (433)
T ss_dssp CSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCC--CTTCCCHHHHHHHHHHHHHSC-TT
T ss_pred CCceEEEeecCEEEeCCCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCccc--ccccCCHHHHHHHHHHHHhCC-CC
Confidence 688999999999999999999999999998999999999999999999875432 124567788999999999873 35
Q ss_pred CCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCccc
Q 013204 95 MAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWR 174 (447)
Q Consensus 95 ~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (447)
.++++|++||++|++.|+++++.+ +++++||+++++|||++..++..++.+ +...+......+..++.+..++
T Consensus 102 ~~~v~~~~gg~ea~~~a~~~~~~~------~~~~~vi~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~ 174 (433)
T 1zod_A 102 LDRALLLSTGAESNEAAIRMAKLV------TGKYEIVGFAQSWHGMTGAAASATYSA-GRKGVGPAAVGSFAIPAPFTYR 174 (433)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHH------HTCCEEEEETTCCCCSSHHHHHTCCSS-CCSSSCCCCTTEEEECCCCTTS
T ss_pred cCEEEEeCchHHHHHHHHHHHHHh------hCCCeEEEECCCcCCCChhHHhhcCCc-cccccCCCCCCceEecCCcccc
Confidence 789999999999999999987654 345789999999999998888776543 2333332233444555543322
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccc
Q 013204 175 YAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLG 254 (447)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g 254 (447)
.+.. .+.+.....++++|++.+....++++++|++||+++++|.++++++++++|+++|++||++||+||+|+|||++|
T Consensus 175 ~~~~-~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g 253 (433)
T 1zod_A 175 PRFE-RNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTG 253 (433)
T ss_dssp CCCE-ETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS
T ss_pred cccC-CchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCc
Confidence 1111 011112334568888888754445789999999999999889999999999999999999999999999999998
Q ss_pred cccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHH
Q 013204 255 TMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIV 334 (447)
Q Consensus 255 ~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~ 334 (447)
..++++.+++.||++++||++++| +|+|++++++++++.+... ...+++|+++++++++++.++++.++++++.
T Consensus 254 ~~~~~~~~~~~~di~s~sK~~~~G-~~ig~~~~~~~~~~~~~~~-----~~~~~~t~~~~~~~~~a~~aal~~~~~~~~~ 327 (433)
T 1zod_A 254 TMFACQRDGVTPDILTLSKTLGAG-LPLAAIVTSAAIEERAHEL-----GYLFYTTHVSDPLPAAVGLRVLDVVQRDGLV 327 (433)
T ss_dssp SSSTHHHHTCCCSEEEECHHHHTT-SSCEEEEECHHHHHHHHHT-----TCCCCCTTTTCHHHHHHHHHHHHHHHHTTHH
T ss_pred hHhHHhhcCCCCCEEEecccccCC-CCeeEEEEhHHHHHhhccC-----CCCCCCCCCcCHHHHHHHHHHHHHHHhCCHH
Confidence 877777888999999999999987 8999999999999888642 2334578899999999999999988777889
Q ss_pred HHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-----CE
Q 013204 335 EQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-----DN 408 (447)
Q Consensus 335 ~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-----~~ 408 (447)
++++++++++++.|+++ ..++.+..+++.|.++++++........ + .......+.+.|+++||++.+++ +.
T Consensus 328 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~~i~~~~~~~~~~--~-~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~ 404 (433)
T 1zod_A 328 ARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKE--P-ADGLGAKITRECMNLGLSMNIVQLPGMGGV 404 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTE--E-CTTHHHHHHHHHHHTTEECCEECCTTSCCE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccC--C-ChHHHHHHHHHHHHCCCeEeccCCCCCCCE
Confidence 99999999999999887 3456677788899999988864321100 0 00134568888999999998874 67
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 409 IMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 409 iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+||+|++.+|+++|++++++|+++++++
T Consensus 405 lRi~~~~~~t~~~i~~~l~~l~~~l~~~ 432 (433)
T 1zod_A 405 FRIAPPLTVSEDEIDLGLSLLGQAIERA 432 (433)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCcCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988654
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-53 Score=419.52 Aligned_cols=384 Identities=23% Similarity=0.341 Sum_probs=310.0
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
..+|+++++++|+++||.|||+||||++++++++|||+||+|++|+.++++++.. .+.+++...++++++++.+.
T Consensus 33 ~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~----~~~~~~~~~~l~~~la~~~~- 107 (429)
T 3k28_A 33 GMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTS----FGAPTEIENKLAKLVIERVP- 107 (429)
T ss_dssp TCCCCCEEEEEBTEEEETTCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSC----CSSCCHHHHHHHHHHHHHST-
T ss_pred CCCCceEEEeecCEEEECCCCEEEECCCChhhcccCCCCHHHHHHHHHHHhhCcC----cCCCCHHHHHHHHHHHHhCC-
Confidence 4689999999999999999999999999999999999999999999999987532 13478889999999999974
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCC-------cce
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAP-------FVL 165 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 165 (447)
+.++++|++||+||++.|+++++.+ +++++||+++++|||++..++..++............. ...
T Consensus 108 -~~~~v~~~~~Gsea~~~ai~~a~~~------~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 180 (429)
T 3k28_A 108 -SIEIVRMVNSGTEATMSALRLARGY------TGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTI 180 (429)
T ss_dssp -TCSEEEEESSHHHHHHHHHHHHHHH------HTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEE
T ss_pred -CCCEEEEeCChHHHHHHHHHHHHHh------hCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCcee
Confidence 6789999999999999999999866 35688999999999999888876664322111100000 001
Q ss_pred ecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEeh
Q 013204 166 HTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADE 245 (447)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DE 245 (447)
.+++ +++++|++++.... +++++|++||+++++|.++++++++++|+++|++||++||+||
T Consensus 181 ~~~~------------------~d~~~le~~l~~~~-~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE 241 (429)
T 3k28_A 181 TVAY------------------NDLESVKYAFEQFG-DDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDE 241 (429)
T ss_dssp EEET------------------TCHHHHHHHHHHHG-GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEC
T ss_pred ecCC------------------CCHHHHHHHHHhCC-CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEec
Confidence 1111 12478888876532 5789999999999999999999999999999999999999999
Q ss_pred hhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHH
Q 013204 246 VICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEAL 325 (447)
Q Consensus 246 v~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l 325 (447)
+|+|| ++|..++.+++++.||++++||++++| +|+|++++++++++.+... +.+.+++|++++++++++++++|
T Consensus 242 v~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G-~~iG~~~~~~~~~~~~~~~----~~~~~~~t~~~~~~a~aaa~aal 315 (429)
T 3k28_A 242 VMTGF-RVAYNCGQGYYGVTPDLTCLGKVIGGG-LPVGAYGGKAEIMRQVAPS----GPIYQAGTLSGNPLAMAAGYETL 315 (429)
T ss_dssp TTTTT-TSSTTHHHHHHTCCCSEEEECGGGGTT-SCCEEEEECHHHHTTBTTT----SSBCCCCTTTTCHHHHHHHHHHH
T ss_pred ccccc-ccCcchHHHHhCCCCceehhhhhhcCC-CCeEEEEEcHHHHhhhccC----CCccccCCCCCChHHHHHHHHHH
Confidence 99999 999888888889999999999999887 8999999999999887531 23456779999999999999999
Q ss_pred HHHhhhcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCC--CCCCcchHHHHHHHHHHcCceE
Q 013204 326 KIYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEP--FPPEWGIGAYFGAQCEKHGMLV 402 (447)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~Gi~~ 402 (447)
+.++ +++.++++++++++++.|+++ ..++.+..+++.|.++++.+......... ..........+.+.|+++||++
T Consensus 316 ~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v 394 (429)
T 3k28_A 316 VQLT-PESYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFL 394 (429)
T ss_dssp HTCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEEC
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCCeEE
Confidence 9765 678899999999999999887 55677778899999999987643211100 0011113456888999999999
Q ss_pred EeeC-CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 403 RVSG-DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 403 ~~~g-~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.+++ +.+|++ +.+|++++++++++|+++++++
T Consensus 395 ~~~~~~~~r~~--~~~t~e~i~~~l~~l~~~l~~~ 427 (429)
T 3k28_A 395 PPSQFEGLFLS--TVHSDADIEATIAAAEIAMSKL 427 (429)
T ss_dssp CSSTTSCBCCC--TTCCHHHHHHHHHHHHHHHHTC
T ss_pred ecCCCCCEEEE--CCCCHHHHHHHHHHHHHHHHHH
Confidence 9875 458875 8999999999999999998754
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-52 Score=413.93 Aligned_cols=379 Identities=29% Similarity=0.517 Sum_probs=311.9
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
.+|+++.+++|+++||.||++||||+++++++++||+||++.+++.+++++....+. ..+.+...++++++++++
T Consensus 38 ~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~--~~~~~~~~~l~~~la~~~--- 112 (420)
T 2pb2_A 38 PADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSN--VFTNEPALRLGRKLIDAT--- 112 (420)
T ss_dssp -CCSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCT--TSCCHHHHHHHHHHHHHS---
T ss_pred CCCceEEeeecCEEEECCCCEEEEccccccccccCCCCHHHHHHHHHHHHhcccccC--ccCCHHHHHHHHHHHhhC---
Confidence 478999999999999999999999999999999999999999999999987544322 246788899999999986
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcc
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYW 173 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
+.++++|++||++|++.|+++++.+...+|.+++++||+++++|||++..++..++.+.++.++.+....+..+++++
T Consensus 113 g~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d-- 190 (420)
T 2pb2_A 113 FAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFND-- 190 (420)
T ss_dssp SCSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECTTC--
T ss_pred CCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecCCC--
Confidence 467999999999999999999887666656566678999999999998887776665544433332222333333321
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcc
Q 013204 174 RYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRL 253 (447)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~ 253 (447)
+++|++.+. +++++|++||+++++|.++++.+++++|+++|++||++||+||+|+||+++
T Consensus 191 ----------------~~~le~~i~----~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~ 250 (420)
T 2pb2_A 191 ----------------LHAVKAVMD----DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRT 250 (420)
T ss_dssp ----------------HHHHHHHCC----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTT
T ss_pred ----------------HHHHHHHhc----cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccC
Confidence 477777664 468999999999999988899999999999999999999999999999999
Q ss_pred ccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcH
Q 013204 254 GTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNI 333 (447)
Q Consensus 254 g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~ 333 (447)
|..++++.+++.||+++|||++++| +|+|++++++++++.+.. ..+..++++++++++++.++|+.++++++
T Consensus 251 g~~~~~~~~~~~~diit~sK~l~~G-~~iG~~~~~~~l~~~l~~-------~~~~~t~~~~~~~~aa~~a~L~~~~~~~~ 322 (420)
T 2pb2_A 251 GDLFAYMHYGVTPDILTSAKALGGG-FPVSAMLTTQEIASAFHV-------GSHGSTYGGNPLACAVAGAAFDIINTPEV 322 (420)
T ss_dssp SSSSHHHHHTCCCSEEEECGGGGTT-SCCEEEEECHHHHTTCC-----------CCEECCCHHHHHHHHHHHHHHSSHHH
T ss_pred CcHHHHHhcCCCCCeEEecccccCC-CceEEEEEhHHHHHhhcC-------CCcCcccCcCHHHHHHHHHHHHHHHhccH
Confidence 9877777788899999999999977 799999999998776642 23556889999999999999998877778
Q ss_pred HHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEEE
Q 013204 334 VEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIMM 411 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR~ 411 (447)
.++++++++++++.|+++ .+++.+..+++.|.++.+++...... ....+.+.|+++||++.+++ +.+|+
T Consensus 323 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~---------~~~~l~~~l~~~Gi~v~~~~~~~iRl 393 (420)
T 2pb2_A 323 LQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKYKG---------RARDFLYAGAEAGVMVLNAGADVMRF 393 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECGGGTT---------CHHHHHHHHHHTTEECEESSTTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEEecceEEEEEECCCchH---------HHHHHHHHHHHCCCEEEeCCCCEEEE
Confidence 899999999999999886 24566667888999999888643100 14568889999999999874 67999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 412 SPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 412 ~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+||+.++++++++++++|+++++++
T Consensus 394 ~~~~~~t~eei~~~~~~l~~~l~~~ 418 (420)
T 2pb2_A 394 APSLVVEEADIHEGMQRFAQAVGKV 418 (420)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998764
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-52 Score=414.68 Aligned_cols=390 Identities=22% Similarity=0.332 Sum_probs=298.9
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
..+|+++++++|+++||.||++||||++++++++|||+||+|++|+.++++++... +.+++...++++++++.++
T Consensus 33 ~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~----~~~~~~~~~la~~l~~~~~- 107 (429)
T 4e77_A 33 GGIPLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSF----GAPTEMEVKMAQLVTDLVP- 107 (429)
T ss_dssp CSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCC----SSCCHHHHHHHHHHHHHST-
T ss_pred CCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCccc----CCCCHHHHHHHHHHHhhCC-
Confidence 45899999999999999999999999999999999999999999999999875321 3477889999999999974
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCc
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHY 172 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
+.++++|++||+||++.|+++++.+ +++++||+++++|||++...+...+......... ..........+..
T Consensus 108 -~~~~v~~~~sGsea~~~al~~a~~~------~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 179 (429)
T 4e77_A 108 -TMDMVRMVNSGTEATMSAIRLARGY------TGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQP-NSPGVPTDFAKHT 179 (429)
T ss_dssp -TCSEEEEESSHHHHHHHHHHHHHHH------HCCCEEEEETTCCCC------------------C-CCTTSCGGGGTTE
T ss_pred -CCCEEEEeCcHHHHHHHHHHHHHHh------hCCCEEEEEcCccCCCChhhhhhcCCcccccCCC-CcCCCCCccCCce
Confidence 5789999999999999999998766 3568999999999999876654443221110000 0000000000000
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc
Q 013204 173 WRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252 (447)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~ 252 (447)
... + .+++++|++++.... +++++|++||+++++|.+.++++|+++|+++|++||++||+||+|+|| +
T Consensus 180 ~~~--~--------~~d~~~le~~l~~~~-~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r 247 (429)
T 4e77_A 180 LTC--T--------YNDLASVRQAFEQYP-QEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-R 247 (429)
T ss_dssp EEE--C--------TTCHHHHHHHHHHST-TTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-T
T ss_pred eec--C--------CCCHHHHHHHHHhcC-CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-c
Confidence 000 0 012478888887533 478999999999999999999999999999999999999999999999 9
Q ss_pred cccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhc
Q 013204 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERN 332 (447)
Q Consensus 253 ~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~ 332 (447)
+|..++.+.+++.||++++||++++| +|+|++++++++++.+... +...+.+|+++++++++++.++|+.+++++
T Consensus 248 ~g~~~~~~~~~~~pdi~t~sK~~~~G-~~~G~~~~~~~~~~~l~~~----~~~~~~~t~~~~~~~~aaa~aal~~~~~~~ 322 (429)
T 4e77_A 248 VALAGAQDYYHVIPDLTCLGKIIGGG-MPVGAFGGRREVMNALAPT----GPVYQAGTLSGNPIAMAAGFACLTEISQVG 322 (429)
T ss_dssp TBTTCHHHHTTCCCSEEEEEGGGGTT-SCCEEEEECHHHHTTBTTT----SSBCC--CCCCCHHHHHHHHHHHHHHTSTT
T ss_pred cCcchHHHhcCCCCCeeeecccccCC-CCeEEEEECHHHHHHhccC----CCccccCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 99888888999999999999999987 8999999999999887532 233567899999999999999999887788
Q ss_pred HHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCC----CCcchHHHHHHHHHHcCceEEeeCC
Q 013204 333 IVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFP----PEWGIGAYFGAQCEKHGMLVRVSGD 407 (447)
Q Consensus 333 ~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~Gi~~~~~g~ 407 (447)
+.++++++++++++.|+++ ..++....+++.|.++++.+..... ...+. ........+.+.|+++||++.+++.
T Consensus 323 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~ 401 (429)
T 4e77_A 323 VYETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADT-VTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSAF 401 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSC-CCSHHHHHTSCHHHHHHHHHHHHHTTEECCSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCcc-cccccccccccHHHHHHHHHHHHHCCeEEeecCC
Confidence 9999999999999999886 5567777888999999998865321 00000 0111235688899999999998763
Q ss_pred -EEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 408 -NIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 408 -~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
.+|+ ++.+|+++|++++++|++++++
T Consensus 402 ~~~~~--~~~~t~e~i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 402 EAGFM--SLAHSNEDIQKTVNAARRCFAK 428 (429)
T ss_dssp SCEEC--CTTCCHHHHHHHHHHHHHHHTT
T ss_pred CCEEE--eccCCHHHHHHHHHHHHHHHHh
Confidence 4554 5899999999999999998753
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-53 Score=423.59 Aligned_cols=395 Identities=20% Similarity=0.354 Sum_probs=299.4
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccc-cCc--CCChHHHHHHHHHHHhc
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS-FWN--RTTKPSLDLAKELLEMF 90 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~--~~~~~~~~l~~~l~~~~ 90 (447)
.+|.++++++|+++||.|||+||||++++++++|||+||+|++|+.+++......+. .++ ...+...++++++++.+
T Consensus 44 ~~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~l~~~~ 123 (472)
T 1ohv_A 44 HFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVA 123 (472)
T ss_dssp CCCBCGGGCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGC
T ss_pred cCCceEEEEEcCEEEeCCCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHhC
Confidence 467788999999999999999999999999999999999999999998643211111 111 12344555555566654
Q ss_pred CcCCCCeEEEeCChhhHHHHHHHHHHHHHHh--cC----------------CCC--cceEEEEcCCCccchhhhhcccCC
Q 013204 91 TASKMAKVFFTNSGSEANDTQVKLVWYYNNA--LG----------------RPN--KKKFIARQKSYHGSTLIAASLSGL 150 (447)
Q Consensus 91 ~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~--~~----------------~~~--~~~vi~~~~~yhg~~~~~~~~~~~ 150 (447)
+.+.++|+|++||+|||+.|+|+++.+++. ++ .++ +++||+++++|||++.+++..++.
T Consensus 124 -~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~ 202 (472)
T 1ohv_A 124 -PKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHS 202 (472)
T ss_dssp -CTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCS
T ss_pred -CCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCC
Confidence 336789999999999999999999876431 11 123 589999999999999999888876
Q ss_pred ccccCCCCCCCCcceecCCCCcccCCCCCC--ChhHHHHHHHHHHHHHHHhhCC--CcEEEEEEccccCCCCCccCChhH
Q 013204 151 PALHQKFDLPAPFVLHTDCPHYWRYAHPGE--TEEEYSTRLANNLEDLILKEGP--ETIAAFIAEPVIGAGGVIPPPATY 226 (447)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~le~~l~~~~~--~~~a~vi~epv~~~~G~~~~~~~~ 226 (447)
..++.. ..+...+.++++|. ++++.+.. ..+.....++++|++++....+ .++++|++||+++++|.++|+++|
T Consensus 203 ~~~~~~-~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~ 280 (472)
T 1ohv_A 203 KAIHKI-DIPSFDWPIAPFPR-LKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDF 280 (472)
T ss_dssp CHHHHT-TSCCCCCCEECCCC-CCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHH
T ss_pred cccccc-CCCCCCCcccCCCc-ccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHH
Confidence 543211 11111222334332 11110000 0012224467889988865321 268999999999999999999999
Q ss_pred HHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCC--CCeeeeccc-CCCcccceeEEEeChhHHHHhhhccCCCC
Q 013204 227 FEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIK--PDLVSFAKA-LSSAYMPIGAILVSPEVSEVIHSQSNTLG 303 (447)
Q Consensus 227 l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~--~d~v~~sK~-l~gg~~~~g~~~~~~~~~~~~~~~~~~~~ 303 (447)
|++|+++|++||++||+||||+|||++|..++++.+++. ||+++|||+ ++||+ ++ ++++. .+ .
T Consensus 281 l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~sK~~l~GG~-----~~-~~~~~-~~-------~ 346 (472)
T 1ohv_A 281 FRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGF-----FH-KEEFR-PN-------A 346 (472)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEEEECGGGSSEEE-----EE-CGGGS-CS-------S
T ss_pred HHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEEEEccccccCCc-----cC-chhhc-cc-------c
Confidence 999999999999999999999999999987788888986 999999999 77652 33 55542 11 2
Q ss_pred ccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc-cCCC-ceeeEeeeeeEEEEEeecCCCCCCCC
Q 013204 304 SFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSP-IIGEIRGTGLILGTEFADNKSPNEPF 381 (447)
Q Consensus 304 ~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~ 381 (447)
.+.+.+|++++|+++++++++|+.+.++++.++++++++++++.|+++ .+++ .+..+++.|.++.+++.+..
T Consensus 347 ~~~~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g~~~~~~~~~~~------ 420 (472)
T 1ohv_A 347 PYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPDES------ 420 (472)
T ss_dssp SSSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEEEEECSSHH------
T ss_pred cccccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCceEEEEEeCChh------
Confidence 345678999999999999999998887888999999999999999887 3456 46678889999888764311
Q ss_pred CCCcchHHHHHHHHHHcCceEEeeC-CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 382 PPEWGIGAYFGAQCEKHGMLVRVSG-DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 382 ~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
....+.+.|+++||++.+.+ +.|||+|++.+|+++|++++++|+++++++
T Consensus 421 -----~~~~~~~~l~~~Gv~~~~~g~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~ 471 (472)
T 1ohv_A 421 -----IRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILADF 471 (472)
T ss_dssp -----HHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred -----HHHHHHHHHHHCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 24568889999999999885 689999999999999999999999988653
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-52 Score=413.87 Aligned_cols=396 Identities=21% Similarity=0.331 Sum_probs=313.7
Q ss_pred CCCeEE--EEecCcEEEe-CCCCEEEecCCccccccCCCCCHHHH-H-HHHH---HHhcCCcccccCcCCChHHHHHHHH
Q 013204 14 VHPLVI--EKSEGSYVYD-VNGKKYLDSLAGLWCTALGGSEPRLV-A-AATA---QLNTLPFYHSFWNRTTKPSLDLAKE 85 (447)
Q Consensus 14 ~~~~~~--~~~~g~~~~d-~dg~~~lD~~~~~~~~~lG~~~p~v~-~-a~~~---~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (447)
.+|.++ .+++|+++|| .||++||||++++++++|||+||+|+ + |+.+ +++++..++ ..++++...+++++
T Consensus 32 ~~~~~~~~~~~~g~~~~d~~~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~la~~ 109 (449)
T 2cjg_A 32 GLDIVLDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSN--SDVYSVAMARFVET 109 (449)
T ss_dssp SCSSCBCTTTCBBTEEEBTTTCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCCCT--TTCCCHHHHHHHHH
T ss_pred CCCeeEEEeeeeeCEEEECCCCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCCCC--cccCCHHHHHHHHH
Confidence 345555 5999999999 99999999999999999999999999 9 9999 887654322 13477888999999
Q ss_pred HHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhc----C--CCCcceEEEEcCCCccchhhhhcccCC-ccccCCCC
Q 013204 86 LLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNAL----G--RPNKKKFIARQKSYHGSTLIAASLSGL-PALHQKFD 158 (447)
Q Consensus 86 l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~----~--~~~~~~vi~~~~~yhg~~~~~~~~~~~-~~~~~~~~ 158 (447)
+++++...+.++|+|++||+||++.|+++++.+...+ | .+++++||+++++|||++..++..++. +.++..+.
T Consensus 110 la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 189 (449)
T 2cjg_A 110 FARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFP 189 (449)
T ss_dssp HHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSC
T ss_pred HHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCC
Confidence 9999743467899999999999999999887654311 1 123578999999999999988888875 44444443
Q ss_pred CCCCcceecCCCCcccCCCCCCCh---hHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHH
Q 013204 159 LPAPFVLHTDCPHYWRYAHPGETE---EEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVK 235 (447)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~ 235 (447)
.....+..+++++. .... +.....++++|++.+... ++++++|++||+++++|.++++++++++|+++|+
T Consensus 190 ~~~~~~~~~~~~d~------~~~~~~~~~~~~~~~~~le~~i~~~-~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~ 262 (449)
T 2cjg_A 190 KFDWPRIDAPYMRP------GLDEPAMAALEAEALRQARAAFETR-PHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCD 262 (449)
T ss_dssp CCCCCEECCCCCCT------TCCHHHHHHHHHHHHHHHHHHHHHS-TTTEEEEEECSEETTTTCEECCHHHHHHHHHHHH
T ss_pred CCCCCcEEEcCCCc------hhhccccchhhHHHHHHHHHHHHhc-CCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHH
Confidence 33333334443320 0110 111234567788888643 2578999999999999999999999999999999
Q ss_pred hcCCEEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcH
Q 013204 236 KYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHP 315 (447)
Q Consensus 236 ~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~ 315 (447)
+||++||+||+|+|+|++|..++++++++.||++++||++ |+|++++++++++.+... ......+.+|+++++
T Consensus 263 ~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l-----~iG~~~~~~~~~~~l~~~--~~~~~~~~~t~~~n~ 335 (449)
T 2cjg_A 263 EFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKT-----QVCGVMAGRRVDEVADNV--FAVPSRLNSTWGGNL 335 (449)
T ss_dssp HTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGG-----SSEEEEECGGGGGSTTCT--TTSTTSSCCSSSSCH
T ss_pred HCCcEEEEeccccCCCccCcceeecccCCCceEEEecCcc-----cEEEEEECHHHhhhhhhc--ccCCcccccCCCCCH
Confidence 9999999999999999999877778889999999999998 789999999988763210 001234567899999
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc-cCCCc-eeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHH
Q 013204 316 VSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSPI-IGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGA 393 (447)
Q Consensus 316 ~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~-~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 393 (447)
++++++.++|+.++++++.++++++++++++.|+++ ..++. +..+++.|.++.+++.... ....+.+
T Consensus 336 ~~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~~~~~~~~~-----------~~~~~~~ 404 (449)
T 2cjg_A 336 TDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSLPTTA-----------DRDELIR 404 (449)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTEEEEECSSHH-----------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEEEEEEECChH-----------HHHHHHH
Confidence 999999999998877788999999999999999887 34564 6678899999988775321 2446888
Q ss_pred HHHHcCceEEeeC-CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 394 QCEKHGMLVRVSG-DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 394 ~l~~~Gi~~~~~g-~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.|+++||++.+++ +.+|++|++.+|+++|++++++|+++++++
T Consensus 405 ~l~~~Gv~v~~~g~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 405 QLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448 (449)
T ss_dssp HHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 8999999999886 689999999999999999999999998754
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-50 Score=401.27 Aligned_cols=408 Identities=27% Similarity=0.485 Sum_probs=319.2
Q ss_pred CCCCCCcCccCCCCCCeE-EEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHH
Q 013204 1 MLAPFTAGWQSTDVHPLV-IEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPS 79 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (447)
+|+|++.+.. .+|++ +.+++|+++||.||++|+|++++.+++++||.||+|++++.+++++...++ ...++++..
T Consensus 13 ~~~~~~~~~~---~~~~~~~~~~~g~~~~d~~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~ 88 (429)
T 1s0a_A 13 ILHPFTSMTS---PLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVM-FGGITHAPA 88 (429)
T ss_dssp BCCTTCCSSS---CCCCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCC-CSSEECHHH
T ss_pred hccccccccc---cCCceeEEeeeeeEEEeCCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccccc-ccccCCHHH
Confidence 4899987653 35665 899999999999999999999999999999999999999999997653321 113356778
Q ss_pred HHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcc-ccCCCC
Q 013204 80 LDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPA-LHQKFD 158 (447)
Q Consensus 80 ~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~-~~~~~~ 158 (447)
.+++++++++++ .+.++++|++||+||++.|+++++.+...+|.+ +++||+++++||++...++..++... ++..+.
T Consensus 89 ~~l~~~la~~~~-~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~-~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~ 166 (429)
T 1s0a_A 89 IELCRKLVAMTP-QPLECVFLADSGSVAVEVAMKMALQYWQAKGEA-RQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWK 166 (429)
T ss_dssp HHHHHHHHHHSC-TTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCC-CCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGT
T ss_pred HHHHHHHHHhCC-CCCCEEEEeCCHHHHHHHHHHHHHHHhcccCCC-CCeEEEECCCCCCCchhhhhhcCCchhhccccc
Confidence 899999999874 467899999999999999999876554333433 47899999999999887777665332 222222
Q ss_pred CCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccc-cCCCCCccCChhHHHHHHHHHHhc
Q 013204 159 LPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPV-IGAGGVIPPPATYFEKVQAVVKKY 237 (447)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv-~~~~G~~~~~~~~l~~l~~l~~~~ 237 (447)
........++++.... . +.+...++++|++.+... ++++++|++||+ ++++|.++++++++++|+++|++|
T Consensus 167 ~~~~~~~~~~~~~~~~----~---~~~~~~d~~~l~~~l~~~-~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~ 238 (429)
T 1s0a_A 167 GYLPENLFAPAPQSRM----D---GEWDERDMVGFARLMAAH-RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDRE 238 (429)
T ss_dssp TTSCCCEEECCCCSBC--------CCCCGGGGHHHHHHHHHH-TTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHH
T ss_pred CCCCCceEeCCCcccc----c---ccchHHHHHHHHHHHHhC-CCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHc
Confidence 2222233444432100 0 001112357788877643 246889999999 999999999999999999999999
Q ss_pred CCEEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHH
Q 013204 238 DILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVS 317 (447)
Q Consensus 238 g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 317 (447)
|+++|+||+|+|||++|..++++.+++.||++++||++++|++|+|++++++++++.+.... .+.+.+.+|+++++++
T Consensus 239 ~~~li~De~~~~~g~~g~~~~~~~~~~~~d~~t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~--~~~~~~~~t~~~n~~~ 316 (429)
T 1s0a_A 239 GILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGE--AGCFMHGPTFMGNPLA 316 (429)
T ss_dssp TCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTST--TSSCSCCCTTTTCHHH
T ss_pred CCEEEEeehhhCCcccchHHHhhhcCCCCCEEEecccccCCCccceEEEeCHHHHHHhhcCC--CcccccCCCCCCCHHH
Confidence 99999999999999998767777788899999999999986579999999999988886421 1223355788999999
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHH
Q 013204 318 CAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEK 397 (447)
Q Consensus 318 ~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 397 (447)
++++.++++.++++++.++++++++++++.|+++..++.+..+++.|.++.+++.... ....+.+.|++
T Consensus 317 ~~a~~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~~~~~~~~-----------~~~~l~~~l~~ 385 (429)
T 1s0a_A 317 CAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPV-----------NMAALQKFFVE 385 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEEETTEEEEEESSCB-----------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEeeEEEEEEECCcc-----------cHHHHHHHHHH
Confidence 9999999998877778899999999999999887435656667788888888875421 14457888999
Q ss_pred cCceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 398 HGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 398 ~Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+||++.+.++.+|++|++.+|++++++++++|++++++
T Consensus 386 ~Gi~v~~~~~~iRis~~~~~t~e~i~~~~~~l~~~~~~ 423 (429)
T 1s0a_A 386 QGVWIRPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQD 423 (429)
T ss_dssp TTEECCCBTTEEEECCCTTCCHHHHHHHHHHHHHHTSS
T ss_pred CCCEEeccCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999988889999999999999999999999988754
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-51 Score=408.01 Aligned_cols=385 Identities=21% Similarity=0.333 Sum_probs=310.6
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
..+|+++++++|+++||.||++||||+++++++++||+||+|++|+.++++++..+ ..+++...++++++++.++
T Consensus 32 ~~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~----~~~~~~~~~la~~l~~~~~- 106 (427)
T 3fq8_A 32 GGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSF----GAPCALENVLAEMVNDAVP- 106 (427)
T ss_dssp TSCCCCEEEEEBTEEEETTSCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCC----SSCCHHHHHHHHHHHHHST-
T ss_pred CCCCceEEEeeeCEEEECCCCEEEECCCchhhhccCCCCHHHHHHHHHHHHhCCCc----CCCCHHHHHHHHHHHHhCC-
Confidence 46799999999999999999999999999999999999999999999999875332 2378889999999999874
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCC-------cce
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAP-------FVL 165 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 165 (447)
+.++++|++||+||++.|+++++.+ +++++||+++++|||++..++..++............. .+.
T Consensus 107 -~~~~v~~~~ggsea~~~al~~a~~~------~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (427)
T 3fq8_A 107 -SIEMVRFVNSGTEACMAVLRIMRAY------TGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTL 179 (427)
T ss_dssp -TCSEEEEESSHHHHHHHHHHHHHHH------HCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEE
T ss_pred -CCCEEEEeCCHHHHHHHHHHHHHHh------hCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCcee
Confidence 6789999999999999999998766 34678999999999998887776654322111100000 011
Q ss_pred ecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEeh
Q 013204 166 HTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADE 245 (447)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DE 245 (447)
..++ +++++|++++... ++++++|++||+++++|.+.++++|+++|+++|++||++||+||
T Consensus 180 ~~~~------------------~d~~~le~~l~~~-~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE 240 (427)
T 3fq8_A 180 TTPY------------------NDLEAVKALFAEN-PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDE 240 (427)
T ss_dssp EEET------------------TCHHHHHHHHHHS-TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEEC
T ss_pred ecCC------------------CCHHHHHHHHHhC-CCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 1111 1257888888653 35789999999999999999999999999999999999999999
Q ss_pred hhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHH
Q 013204 246 VICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEAL 325 (447)
Q Consensus 246 v~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l 325 (447)
+|+|| ++|..++.+.+++.||++++||++++| +|+|++++++++++.+... +.+.+++|+++++++++++.+++
T Consensus 241 v~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G-~~~G~~~~~~~~~~~~~~~----~~~~~~~t~~~~~~~~aa~~aal 314 (427)
T 3fq8_A 241 VITGF-RIAYGGVQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAPA----GPMYQAGTLSGNPLAMTAGIKTL 314 (427)
T ss_dssp TTTBT-TTBTTHHHHHTTCCCSEEEECGGGGTT-SSCEEEEECHHHHTTBTTT----SSBCCCCTTTTCHHHHHHHHHHH
T ss_pred ccccc-ccCcchhhHhcCCCCChhhhhhhhhCC-cceEEEEEcHHHHHhhccC----CCccccCCCCcCHHHHHHHHHHH
Confidence 99999 888878888899999999999999987 8999999999999888632 23457789999999999999999
Q ss_pred HHHhhhcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCC--CCCCCcchHHHHHHHHHHcCceE
Q 013204 326 KIYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNE--PFPPEWGIGAYFGAQCEKHGMLV 402 (447)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~Gi~~ 402 (447)
+.++++++.++++++++++++.|+++ ...+....+++.|.++++.+........ ...........+.+.|+++||++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v 394 (427)
T 3fq8_A 315 ELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYL 394 (427)
T ss_dssp HHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEEC
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEE
Confidence 98877889999999999999999887 4456666778899999998865321100 00011112456888999999999
Q ss_pred EeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 403 RVSGDNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 403 ~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
.+++. -|+++++.+|+++|++++++|++++++
T Consensus 395 ~~~~~-~r~~~~~~~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 395 APSQF-EAGFTSLAHTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp CSSTT-SCEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ecCCC-CCEEeeCcCCHHHHHHHHHHHHHHHHh
Confidence 88763 266667999999999999999998864
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-56 Score=439.34 Aligned_cols=379 Identities=21% Similarity=0.280 Sum_probs=306.4
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
.+|+++++++|+++||.|||+||||++++++++|||+||+|++|+.++++++.. +.++++...+|++++++.++
T Consensus 81 ~~p~~~~~~~G~~l~D~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~~----~~~~~~~~~~Lae~L~~~~p-- 154 (465)
T 2yky_A 81 PFPLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLN----LSTQTENEALFAEAVCDRFP-- 154 (465)
Confidence 469999999999999999999999999999999999999999999999987421 13467888999999999874
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcc
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYW 173 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
+.++++|++||+|||+.|+++++.+ +++++||+++++|||++..++ ++ + ...+ .+. ..+.
T Consensus 155 ~~~~v~~~nSGseA~~~Aik~ar~~------tgr~~ii~~~~~yHG~~~~~~--sg-~-~~~g--~~~---~~~~----- 214 (465)
T 2yky_A 155 SIDLVRFTNSGTEANLMALATATAI------TGRKTVLAFDGGYHGGLLNFA--SG-H-APTN--APY---HVVL----- 214 (465)
Confidence 5678999999999999999998765 567899999999999988777 32 1 1111 100 0011
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcc
Q 013204 174 RYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRL 253 (447)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~ 253 (447)
+..+++++|++++... ++++++|++||+++++|.++++++|+++|+++|++||++||+||+|+ | |+
T Consensus 215 -----------~~~~d~~~l~~~l~~~-~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~-r~ 280 (465)
T 2yky_A 215 -----------GVYNDVEGTADLLKRH-GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-S-RL 280 (465)
Confidence 1123457788877643 25789999999999999999999999999999999999999999999 6 89
Q ss_pred ccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcH
Q 013204 254 GTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNI 333 (447)
Q Consensus 254 g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~ 333 (447)
|..++++++++.||+++|||++++| +|+|++++++++++.+... ..+.+.+.+|+++||+++++++++|+.++++++
T Consensus 281 g~~~a~~~~gv~pDi~t~sK~lg~G-~piG~v~~~~~i~~~l~~~--~~g~~~~~~T~~~npla~aAa~aaL~~l~~~~~ 357 (465)
T 2yky_A 281 SGGGAQEMLGISADLTTLGKYIGGG-MSFGAFGGRRDLMERFDPA--RDGAFAHAGTFNNNILTMSAGHAALTQIYTRQA 357 (465)
Confidence 9888889999999999999999997 8999999999999988631 012345678999999999999999999988889
Q ss_pred HHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCC--CCCCcchHHHHHHHHHHcCceEEeeCCEEE
Q 013204 334 VEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEP--FPPEWGIGAYFGAQCEKHGMLVRVSGDNIM 410 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~Gi~~~~~g~~iR 410 (447)
.++++++++++++.|+++ .+++++..+++.|.++++.+.+....... -..+......+.+.|+++||++.+++...
T Consensus 358 ~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~~~~~- 436 (465)
T 2yky_A 358 ASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAPRGMYA- 436 (465)
Confidence 999999999999999987 55677778899999999988641100000 00011124458888999999998875322
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 411 MSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 411 ~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
|++.+|+++|++++++|++++++++.
T Consensus 437 --~s~~~t~edid~~l~~l~~~l~~~~~ 462 (465)
T 2yky_A 437 --LSLEIADAGRDAFAEALADFIGEQRA 462 (465)
Confidence 77899999999999999999987643
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=386.42 Aligned_cols=386 Identities=31% Similarity=0.539 Sum_probs=302.9
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCC-CHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGS-EPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
.+|+++.+++|+++||.||++|+|++++.+++++||+ ||+|++++.+++++...+ +...++++...++++++++.++
T Consensus 23 ~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~-~~~~~~~~~~~~l~~~la~~~~- 100 (419)
T 2eo5_A 23 LFPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHA-AANDFYNIPQLELAKKLVTYSP- 100 (419)
T ss_dssp CCCCCEEEEEBTEEEETTSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCC-SCSCSCCHHHHHHHHHHHHHSS-
T ss_pred CCCceEEeeecCEEEECCCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCccc-cccccCCHHHHHHHHHHHHhCC-
Confidence 4788999999999999999999999999999999999 999999999999775332 1123567788999999999873
Q ss_pred CC-CCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCc-cccCCCCCCCCcceecCCC
Q 013204 93 SK-MAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLP-ALHQKFDLPAPFVLHTDCP 170 (447)
Q Consensus 93 ~~-~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 170 (447)
.+ .++++|++||+||++.|+++++.+ + +++||+++++|||++..++..++.. .++..+......+..++++
T Consensus 101 ~~~~~~v~~~~gg~ea~~~ai~~~~~~------~-~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (419)
T 2eo5_A 101 GNFQKKVFFSNSGTEAIEASIKVVKNT------G-RKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYP 173 (419)
T ss_dssp CSSCEEEEEESSHHHHHHHHHHHHHTT------S-CCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCC
T ss_pred CCcCCEEEEeCchHHHHHHHHHHHHHh------h-CCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCC
Confidence 33 579999999999999999987633 2 5789999999999998888777654 4444443333334555554
Q ss_pred CcccCCCCCC--C-h-hHHHHHHHHHHH-HHHHhhC-CCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEe
Q 013204 171 HYWRYAHPGE--T-E-EEYSTRLANNLE-DLILKEG-PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIAD 244 (447)
Q Consensus 171 ~~~~~~~~~~--~-~-~~~~~~~~~~le-~~l~~~~-~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~D 244 (447)
+.++.+.... + . ++.. .++++|+ +.+.... ++++++|++||+++++|.++++++++++|+++|++||++||+|
T Consensus 174 ~~~~~~~g~~~~~~~~~~~~-~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~D 252 (419)
T 2eo5_A 174 NPYRNPWHINGYENPSELVN-RVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDD 252 (419)
T ss_dssp CSSSCTTCCCTTTCHHHHHH-HHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEE
T ss_pred ccccccccccccccchhhHH-HHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 4332111100 0 0 1222 4568888 8776421 1468899999999999988999999999999999999999999
Q ss_pred hhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHH
Q 013204 245 EVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEA 324 (447)
Q Consensus 245 Ev~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~ 324 (447)
|+|+|||++|..++++.+++.||+++|||++++|++|+|+++++++++ .+ .. .+.+|++.++++++++.++
T Consensus 253 E~~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~~G~~riG~~~~~~~~~-~~-~~-------~~~~t~~~n~~~~~aa~aa 323 (419)
T 2eo5_A 253 EVQMGLGRTGKLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDLD-FK-PG-------MHSNTFGGNALACAIGSKV 323 (419)
T ss_dssp CTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTTSCCEEEEEEGGGC-CC--------------CCCCCHHHHHHHHHH
T ss_pred ccccCCccCcchhhHHhcCCCCCEEEecccccCCccceEEEEEchHhh-cC-Cc-------ccCCCCCCCHHHHHHHHHH
Confidence 999999999877777888889999999999998658999999999877 55 21 3446889999999999999
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEe
Q 013204 325 LKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV 404 (447)
Q Consensus 325 l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~ 404 (447)
|+.+++ +.++++++++++++.|+++ +..+++.|.++.+++.... .... +.+.|+++||++.+
T Consensus 324 l~~~~~--~~~~~~~~~~~l~~~L~~~-----~~~~~~~g~~~~i~~~~~~----------~~~~-~~~~l~~~Gv~v~~ 385 (419)
T 2eo5_A 324 IDIVKD--LLPHVNEIGKIFAEELQGL-----ADDVRGIGLAWGLEYNEKK----------VRDR-IIGESFKRGLLLLP 385 (419)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHTTS-----SSEEEEETTEEEEECSCHH----------HHHH-HHHHHHHTTEECEE
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHh-----hhheEeeeEEEEEEEecCc----------cHHH-HHHHHHHCCCEEec
Confidence 997654 7888999999999988775 3356788988888773110 0245 78889999999999
Q ss_pred eC-CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 405 SG-DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 405 ~g-~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
++ +.+||+|++.+|++++++++++|+++++++
T Consensus 386 ~~~~~lRis~~~~~t~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 386 AGRSAIRVIPPLVISEEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp ETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 85 789999999999999999999999988653
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-49 Score=393.34 Aligned_cols=385 Identities=23% Similarity=0.355 Sum_probs=300.4
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
.+|+++.+++|+++||.||++||||+++.+++++||+||+|.+++.+++++... .+++.+...+++++++++++
T Consensus 37 ~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~----~~~~~~~~~~l~~~la~~~~-- 110 (434)
T 2epj_A 37 PYPFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEEALARGWL----YGAPGEAEVLLAEKILGYVK-- 110 (434)
T ss_dssp SSCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCSC----CSSCCHHHHHHHHHHHHHHC--
T ss_pred CCCeeEEeeecCEEEECCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhCCC----CCCCCHHHHHHHHHHHHhCC--
Confidence 469999999999999999999999999999999999999999999999987421 13467888999999999873
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccC--C--CCCCC---Cccee
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQ--K--FDLPA---PFVLH 166 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~--~--~~~~~---~~~~~ 166 (447)
+.++++|++||++|++.|+++++.+ .++++||+++++|||++..++...+...... + .+.+. .....
T Consensus 111 ~~~~v~~~~sgseA~~~al~~ar~~------~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~ 184 (434)
T 2epj_A 111 RGGMIRFVNSGTEATMTAIRLARGY------TGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLV 184 (434)
T ss_dssp TTCEEEEESSHHHHHHHHHHHHHHH------HCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHh------hCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEe
Confidence 5789999999999999999997655 2457899999999999887765544321100 0 01100 01111
Q ss_pred cCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehh
Q 013204 167 TDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEV 246 (447)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv 246 (447)
+++. ++++|++.+.... +++++|++||+++++|.++++++|+++|+++|++||++||+||+
T Consensus 185 ~~~~------------------d~~~le~~l~~~~-~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv 245 (434)
T 2epj_A 185 TPYN------------------DVEALERVFAEYG-DRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEV 245 (434)
T ss_dssp EETT------------------CHHHHHHHHHHHG-GGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEET
T ss_pred cCCC------------------CHHHHHHHHHhCC-CCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcc
Confidence 1111 2477888876432 47899999999999999999999999999999999999999999
Q ss_pred hcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHH
Q 013204 247 ICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALK 326 (447)
Q Consensus 247 ~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~ 326 (447)
|+|| ++|..++++.+++.||++++||++++| +|+|++++++++++.+... +...+.+|+++++++++++.++|+
T Consensus 246 ~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G-~~~G~v~~~~~~~~~l~~~----~~~~~~~t~~~~~~~~aa~~a~l~ 319 (434)
T 2epj_A 246 VTGF-RLGLEGAQGYFNIEGDIIVLGKIIGGG-FPVGAVAGSREVMSLLTPQ----GKVFNAGTFNAHPITMAAGLATLK 319 (434)
T ss_dssp TTTT-TSSTTHHHHHHTCCCSEEEEEGGGGTT-SSCEEEEECHHHHTTBTTT----SSBCCCCTTTTCHHHHHHHHHHHH
T ss_pred hhce-eCCcchhhHHhCCCCCeeeecchhcCC-cceeeeeecHHHHHhhccC----CCcccCCCCCcCHHHHHHHHHHHH
Confidence 9999 778777778889999999999999997 8999999999998877531 123456789999999999999999
Q ss_pred HHhhhcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCC--CCCCCcchHHHHHHHHHHcCceEE
Q 013204 327 IYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNE--PFPPEWGIGAYFGAQCEKHGMLVR 403 (447)
Q Consensus 327 ~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~Gi~~~ 403 (447)
.++++++.++++++++++++.|+++ .++++...+++.|.++++.+........ ...........+.+.|+++||++.
T Consensus 320 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~ 399 (434)
T 2epj_A 320 ALEEEPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIA 399 (434)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECC
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEe
Confidence 8877889999999999999999886 3345555678889999998864210000 000000124568888999999998
Q ss_pred eeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 404 VSGDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 404 ~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+++.. |+.+++.+|++++++++++|+++++++
T Consensus 400 ~~~~~-~~~~~~~~t~e~i~~~l~~l~~~l~~~ 431 (434)
T 2epj_A 400 PSNLE-AVFTGLPHQGEALEIAVEGLRSSLKTV 431 (434)
T ss_dssp SSTTS-CEECCTTCSHHHHHHHHHHHHHHHHHH
T ss_pred ccCCC-cEEEeccCCHHHHHHHHHHHHHHHHHH
Confidence 87532 445568999999999999999998765
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-48 Score=384.20 Aligned_cols=382 Identities=29% Similarity=0.496 Sum_probs=318.2
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
..+|+++.+++|++++|.||++|+||+++++.+++||+||++.+++.+++.+..... ...+.+...++++++++.+
T Consensus 19 ~~~~~~~~~~~g~~~~~~~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~la~~~-- 94 (406)
T 4adb_A 19 APAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTG--NGYTNEPVLRLAKKLIDAT-- 94 (406)
T ss_dssp CCCSSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCC--TTSCCHHHHHHHHHHHHHS--
T ss_pred CCCCceEEeeccCEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccccc--CCcCCHHHHHHHHHHHhhC--
Confidence 456899999999999999999999999999999999999999999999998753322 2346778899999999996
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCc
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHY 172 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
+.++++|++||++|++.|+++++.+...++.+++++||+.+++||++...+...++.+.+...+......+..+++++
T Consensus 95 -~~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d- 172 (406)
T 4adb_A 95 -FADRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYND- 172 (406)
T ss_dssp -SCSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTC-
T ss_pred -CCCeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCCc-
Confidence 456999999999999999998877655556566789999999999998888887776665544443333333444322
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc
Q 013204 173 WRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252 (447)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~ 252 (447)
+++|++.+. +++++|+++|++++||.++++.+++++|.++|++||+++|+||+|+||++
T Consensus 173 -----------------~~~l~~~l~----~~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~ 231 (406)
T 4adb_A 173 -----------------INSASALID----DSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGR 231 (406)
T ss_dssp -----------------HHHHHTTCS----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTT
T ss_pred -----------------HHHHHHHhc----CCeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 366776654 46889999999999998888999999999999999999999999999999
Q ss_pred cccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhc
Q 013204 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERN 332 (447)
Q Consensus 253 ~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~ 332 (447)
.|..++.+.+++.+|+++|||.+++| +|+|++++++++++.+. ...+..+++.++++++++.++++.++.++
T Consensus 232 ~g~~~~~~~~~~~~d~~t~sK~~~~G-~r~G~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~a~~~~l~~~~~~~ 303 (406)
T 4adb_A 232 TGELYAYMHYGVTPDLLTTAKALGGG-FPVGALLATEECARVMT-------VGTHGTTYGGNPLASAVAGKVLELINTPE 303 (406)
T ss_dssp TSSSSHHHHHTCCCSEEEECGGGGTT-SCCEEEEECHHHHHTCC-------TTSSCCSSTTCHHHHHHHHHHHHHHSSHH
T ss_pred cchhHHHHhcCCCCCEEEechhhcCC-CCeEEEEEcHHHHhhhc-------cCCcCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 99887777888999999999999976 89999999999988775 23456788899999999999999887777
Q ss_pred HHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEE
Q 013204 333 IVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIM 410 (447)
Q Consensus 333 ~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR 410 (447)
+.++++++++++++.|+++ ..++....+++.|.++.+.+...... ....+.+.|+++||++.+++ +.+|
T Consensus 304 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---------~~~~~~~~l~~~gi~v~~~~~~~iR 374 (406)
T 4adb_A 304 MLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNADYAG---------QAKQISQEAAKAGVMVLIAGGNVVR 374 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECTTTTT---------CHHHHHHHHHHTTEECEESSTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEEEEEeCCcHH---------HHHHHHHHHHHCCcEEeecCCCeEE
Confidence 8899999999999999887 34466667788899989888653210 14568899999999999876 6799
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 411 MSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 411 ~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
++|++.++++++++++++|+++++++++
T Consensus 375 i~~~~~~~~e~i~~~~~~l~~~l~~~~~ 402 (406)
T 4adb_A 375 FAPALNVSEEEVTTGLDRFAAACEHFVS 402 (406)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999987654
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-48 Score=386.62 Aligned_cols=381 Identities=24% Similarity=0.362 Sum_probs=296.9
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
.+|+++.+++|+++||.||++|+||+++.|++++||+||+|.+++.++++++.. .+++.+...+++++++++++
T Consensus 33 ~~p~~~~~~~g~~~~d~~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~----~~~~~~~~~~l~~~l~~~~~-- 106 (424)
T 2e7u_A 33 GTPPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRETLERGLT----FGAPSPLEVALAKKVKRAYP-- 106 (424)
T ss_dssp SCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCSC----CSSCCHHHHHHHHHHHHHCT--
T ss_pred CCCeeEEeeecCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCC----CCCCCHHHHHHHHHHHHhCC--
Confidence 358999999999999999999999999999999999999999999999987421 13467888999999999973
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc--CC--CCCCC---Cccee
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH--QK--FDLPA---PFVLH 166 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~--~~--~~~~~---~~~~~ 166 (447)
+.++++|++||++|++.|+++++.+ +++++||+++++|||++..++...+..... .+ .+.+. .....
T Consensus 107 ~~~~v~~~~~g~ea~~~al~~ar~~------~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~ 180 (424)
T 2e7u_A 107 FVDLVRFVNSGTEATMSALRLARGY------TGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLV 180 (424)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHH------HCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHh------hCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEe
Confidence 6789999999999999999987655 345789999999999987776554331110 00 01100 01111
Q ss_pred cCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehh
Q 013204 167 TDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEV 246 (447)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv 246 (447)
+++. ++++|++.+... ++++++|++||+++++|.++++++|+++|+++ ++||++||+||+
T Consensus 181 ~~~~------------------d~~~le~~l~~~-~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv 240 (424)
T 2e7u_A 181 LEYN------------------DPEGLREVLKRR-GEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEV 240 (424)
T ss_dssp ECTT------------------CHHHHHHHHHHH-GGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECT
T ss_pred CCCC------------------CHHHHHHHHHhC-CCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecC
Confidence 2211 247788877643 24689999999999999899999999999999 999999999999
Q ss_pred hcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHH
Q 013204 247 ICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALK 326 (447)
Q Consensus 247 ~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~ 326 (447)
|+|| +.|..++.+++++.||++++||++++| +|+|++++++++++.+... +...+.+|+++++++++++.++|+
T Consensus 241 ~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G-~~~G~~~~~~~~~~~~~~~----~~~~~~~t~~~~~~~~aaa~aal~ 314 (424)
T 2e7u_A 241 MTGF-RLAFGGATELLGLKPDLVTLGKILGGG-LPAAAYAGRREIMEKVAPL----GPVYQAGTLSGNPLAMAAGLATLE 314 (424)
T ss_dssp TTTT-TSSTTHHHHHHTCCCSEEEECGGGGTT-SSCEEEEECHHHHTTBTTT----SSBCCCCTTCSCHHHHHHHHHHHH
T ss_pred cccc-ccchhHHHHHhCCCcchhhhhhhhhCC-cceEEEEEcHHHHhhhccc----CCcccCCCCCCCHHHHHHHHHHHH
Confidence 9999 888777777889999999999999987 8999999999999887531 123466789999999999999999
Q ss_pred HHhh-hcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCC--CCCCCcchHHHHHHHHHHcCceE
Q 013204 327 IYKE-RNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNE--PFPPEWGIGAYFGAQCEKHGMLV 402 (447)
Q Consensus 327 ~~~~-~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~Gi~~ 402 (447)
.+++ +++.++++++++++++.|+++ ..++....+++.|.++++++........ ...........+.+.|+++||++
T Consensus 315 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v 394 (424)
T 2e7u_A 315 LLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYW 394 (424)
T ss_dssp HHHHCTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEEC
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEE
Confidence 8877 788999999999999999887 3345555678889999988764210000 00000112456888899999999
Q ss_pred EeeCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 403 RVSGDNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 403 ~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
.+++.. |+.+++.+|+++|++++++|++++
T Consensus 395 ~~~~~~-~~~~~~~~t~~~i~~~l~~l~~~l 424 (424)
T 2e7u_A 395 PPSNFE-AAFLSVAHREEDVEKTLEALRKAL 424 (424)
T ss_dssp CSSSSS-CEECCTTCCHHHHHHHHHHHHHHC
T ss_pred eccCCC-ceEeeccCCHHHHHHHHHHHHHhC
Confidence 887532 344568999999999999998763
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-48 Score=377.60 Aligned_cols=373 Identities=28% Similarity=0.494 Sum_probs=310.1
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
..+|+++++++|++++|.||++|+||+++++..+|||+||++.+++.+++++....+. .++.+...++++++++.+
T Consensus 16 ~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~la~~~-- 91 (392)
T 3ruy_A 16 HPLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSR--AFHSDQLGPWYEKVAKLT-- 91 (392)
T ss_dssp CCCSCEECEEEBTEEECTTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCT--TSEETTHHHHHHHHHHHH--
T ss_pred CCCCceEEeeeeCEEEeCCCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhcccccc--ccCCHHHHHHHHHHHHhc--
Confidence 4578999999999999999999999999999999999999999999999987544322 235677889999999987
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHH-HhcC-CCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYN-NALG-RPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP 170 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~-~~~~-~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (447)
+.++++|++||++|++.|+++++... ...| .+++++||+.+++|||.+..++..++.+.+...+.........+++.
T Consensus 92 -g~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (392)
T 3ruy_A 92 -NKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYG 170 (392)
T ss_dssp -TCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTT
T ss_pred -CCCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcc
Confidence 37799999999999999999876541 1222 23457999999999999988888777666555444333333333321
Q ss_pred CcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCC
Q 013204 171 HYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250 (447)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~ 250 (447)
++++|++.+. +++++|+++++++++|.+.++.+++++|.++|++||+++|+||+|+||
T Consensus 171 ------------------d~~~l~~~l~----~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~ 228 (392)
T 3ruy_A 171 ------------------DLEALKAAIT----PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGL 228 (392)
T ss_dssp ------------------CHHHHHHHCC----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT
T ss_pred ------------------cHHHHHHHhc----cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCC
Confidence 1477777765 478999999999999999999999999999999999999999999999
Q ss_pred CccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh
Q 013204 251 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE 330 (447)
Q Consensus 251 g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~ 330 (447)
++.|..+..+.+++.||++++||+++||++|+|++++++++++.+. ...+..+++.++++++++.++++.++.
T Consensus 229 ~~~g~~~~~~~~~~~~d~~~~SK~l~gG~~~~G~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~a~~~~l~~~~~ 301 (392)
T 3ruy_A 229 GRTGKVFACDWDNVTPDMYILGKALGGGVFPISCAAANRDILGVFE-------PGSHGSTFGGNPLACAVSIAALEVLEE 301 (392)
T ss_dssp TTTSSSSGGGGGTCCCSEEEECGGGGTTTSCCEEEEECHHHHTTCC-------TTSSCCSSTTCHHHHHHHHHHHHHHHH
T ss_pred CccccchhhhccCCCCCEEEEchhhhCChhhhEEEEECHHHHhhhc-------cCCcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 9999888888889999999999999997679999999999887775 334567889999999999999998877
Q ss_pred hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEE
Q 013204 331 RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNI 409 (447)
Q Consensus 331 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~i 409 (447)
+++.++++++.+++++.|+++ ..+.+...++.|.++.+.+.. . ...+.+.|+++||++.+++ +.+
T Consensus 302 ~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~g~~~~~~~~~-~------------~~~l~~~l~~~gi~v~~~~~~~i 367 (392)
T 3ruy_A 302 EKLTERSLQLGEKLVGQLKEI-DNPMITEVRGKGLFIGIELNE-P------------ARPYCEQLKAAGLLCKETHENVI 367 (392)
T ss_dssp TTHHHHHHHHHHHHHHHHTTC-CCTTEEEEEEETTEEEEEESS-C------------SHHHHHHHHTTTEECCCBTTTEE
T ss_pred hhHHHHHHHHHHHHHHHHHHh-cCCCceEEEeeeeEEEEEEcc-h------------HHHHHHHHHHCCcEEecCCCCEE
Confidence 788899999999999999887 336677778889988888754 1 3458889999999999886 679
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHH
Q 013204 410 MMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 410 R~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
|++|++.+|++++++++++|++++
T Consensus 368 Ri~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 368 RIAPPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999876
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-47 Score=382.19 Aligned_cols=385 Identities=23% Similarity=0.312 Sum_probs=283.2
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
.+|+++.+++|+++||.||++|+||+++++++++||+||+|.+++.+++++... .+.+.+...++++++++.++
T Consensus 38 ~~p~~~~~~~G~~~~d~~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~----~~~~~~~~~~la~~l~~~~~-- 111 (453)
T 2cy8_A 38 PHGLFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHGVQ----YAASHPLEVRWAERIVAAFP-- 111 (453)
T ss_dssp SCCCCEEEEEBTEEEETTCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTTCS----SCSSCHHHHHHHHHHHHHCT--
T ss_pred CCCceEEEeecCEEEECCCCEEEECcccHhhcccCCCCHHHHHHHHHHHHhCCC----CCCCCHHHHHHHHHHHhhCC--
Confidence 469999999999999999999999999999999999999999999999977422 13477888999999998863
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc-CC-CCCCC---CcceecC
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH-QK-FDLPA---PFVLHTD 168 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~-~~-~~~~~---~~~~~~~ 168 (447)
+.++++|++||++|++.|+++++.+ .++++||+++++|||++...+...+.. +. .. .+.+. .....++
T Consensus 112 ~~~~v~~~~gg~eA~~~al~~ar~~------~~~~~vi~~~~~yhg~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~ 184 (453)
T 2cy8_A 112 SIRKLRFTGSGTETTLLALRVARAF------TGRRMILRFEGHYHGWHDFSASGYNSH-FDGQPAPGVLPETTANTLLIR 184 (453)
T ss_dssp TCSEEEEESCHHHHHHHHHHHHHHH------HCCCEEEEECC-----------------------------CGGGEEEEC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHh------hCCCEEEEEcCCcCCCchhhHhhcCCc-cCCCcCCCCCccccCceeecC
Confidence 6789999999999999999997654 234689999999999987666544320 00 00 01110 0111112
Q ss_pred CCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc
Q 013204 169 CPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC 248 (447)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~ 248 (447)
+. ++++|++.+.... +++++|++||+++++|.++++++++++|+++|++||++||+||+|+
T Consensus 185 ~~------------------d~~~le~~l~~~~-~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~ 245 (453)
T 2cy8_A 185 PD------------------DIEGMREVFANHG-SDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVIS 245 (453)
T ss_dssp TT------------------CHHHHHHHHHHHG-GGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred CC------------------CHHHHHHHHHhcC-CCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcc
Confidence 11 2477888876432 4689999999988888889999999999999999999999999999
Q ss_pred CCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHH-
Q 013204 249 AFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKI- 327 (447)
Q Consensus 249 g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~- 327 (447)
|| +.|..++++.+++.||++++||++++| +|+|++++++++++.+... ..+...+.+|++++|++++++.++|+.
T Consensus 246 g~-~~g~~~~~~~~~~~~di~s~sK~l~~G-~~~G~v~~~~~~~~~l~~~--~~~~~~~~~t~~~n~~~~aa~~aal~~~ 321 (453)
T 2cy8_A 246 GF-RVGNHGMQALLDVQPDLTCLAKASAGG-LPGGILGGREDVMGVLSRG--SDRKVLHQGTFTGNPITAAAAIAAIDTI 321 (453)
T ss_dssp TT-TTCTTHHHHHHTCCCSEEEEEGGGGTT-SSCEEEEECHHHHTTSSSC--C---------CCCCHHHHHHHHHHHHHH
T ss_pred cc-ccCchhhhHHhCCCCcEEEEChhhhCC-cceEEEechHHHHHHhccc--cCCCceeCCCCCCCHHHHHHHHHHHHHH
Confidence 99 888777777888999999999999987 8999999999998877531 001223567889999999999999998
Q ss_pred HhhhcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeec-----CC---CCCCCCCCCcchHHHHHHHHHHc
Q 013204 328 YKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFAD-----NK---SPNEPFPPEWGIGAYFGAQCEKH 398 (447)
Q Consensus 328 ~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~-----~~---~~~~~~~~~~~~~~~~~~~l~~~ 398 (447)
+ .+++.++++++++++++.|+++ ..++....+++.|.++++.+.. .. .....-.........+.+.|+++
T Consensus 322 ~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 400 (453)
T 2cy8_A 322 L-EDDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILE 400 (453)
T ss_dssp H-HTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHT
T ss_pred h-hhhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHC
Confidence 7 6788899999999999999887 3456555678889999998864 10 00000000001245688889999
Q ss_pred CceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 399 GMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 399 Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
||++.+.+ .+| +++.+++++|++++++|+++++++++
T Consensus 401 Gv~v~~~~-~~~--l~~~~t~~~i~~~l~~l~~~l~~~~~ 437 (453)
T 2cy8_A 401 GVDIGGRG-SVF--LSAQHEREHVEHLVTTFDRVLDRLAD 437 (453)
T ss_dssp TEECBTTT-EEE--CCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEeCCC-CEE--eeccCCHHHHHHHHHHHHHHHHHHHh
Confidence 99996543 455 45899999999999999999988754
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-46 Score=366.36 Aligned_cols=396 Identities=27% Similarity=0.495 Sum_probs=306.5
Q ss_pred CCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCC
Q 013204 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASK 94 (447)
Q Consensus 15 ~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 94 (447)
+|+++.+++|+++||.||++|+||+++.++.++||.+|++++++.+++++....+ ....+.+...++++++++++....
T Consensus 23 ~~~~~~~~~g~~~~d~~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~-~~~~~~~~~~~l~~~la~~~~~~~ 101 (426)
T 1sff_A 23 HPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTC-FQVLAYEPYLELCEIMNQKVPGDF 101 (426)
T ss_dssp EEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCC-TTTEECHHHHHHHHHHHHHSSCSS
T ss_pred CCceEEecccCEEEeCCCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhCCCcc-ccccCCHHHHHHHHHHHHhCCccc
Confidence 5889999999999999999999999999888999999999999999987643221 113457788999999999983222
Q ss_pred CCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCc-cccCCCCCCCCcceecCCCCcc
Q 013204 95 MAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLP-ALHQKFDLPAPFVLHTDCPHYW 173 (447)
Q Consensus 95 ~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
+++++|++||++|++.++++++... ++.+|++++++||+....++...+.. .++..+......+..++++..+
T Consensus 102 ~~~v~~~~g~~~a~~~~~~~a~~~~------~~~~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~ 175 (426)
T 1sff_A 102 AKKTLLVTTGSEAVENAVKIARAAT------KRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPL 175 (426)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHH------TCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGG
T ss_pred ccEEEEeCchHHHHHHHHHHHHHhh------CCCeEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccc
Confidence 3799999999999999999765432 23489999999999987666555432 2333333222223344443211
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHhh-CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc
Q 013204 174 RYAHPGETEEEYSTRLANNLEDLILKE-GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252 (447)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~le~~l~~~-~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~ 252 (447)
+ +. ....++++|++.+... .++++++|+++|+++++|.+.++++++++|.++|++||++||+||+|+||++
T Consensus 176 ~----~~----~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~ 247 (426)
T 1sff_A 176 H----GI----SEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGR 247 (426)
T ss_dssp G----TB----CHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred c----cc----chHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCc
Confidence 0 00 0123467888877642 1246889999999877888999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhc
Q 013204 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERN 332 (447)
Q Consensus 253 ~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~ 332 (447)
.|..++++.+++.||+++|||++++| +|+|++++++++++.+.. ..+..+++.++++++++.++|+.+++++
T Consensus 248 ~g~~~~~~~~~~~~di~s~sK~~~~G-lriG~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~a~~aal~~~~~~~ 319 (426)
T 1sff_A 248 TGTLFAMEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAP-------GGLGGTYAGNPIACVAALEVLKVFEQEN 319 (426)
T ss_dssp TSSSSGGGGTTSCCSEEEECGGGGTS-SCCEEEEEEHHHHTTSCT-------TSBCCSSSSCHHHHHHHHHHHHHHHHTT
T ss_pred ccchhhhhhcCCCCCEEEEcccccCC-CceEEEEEcHHHHhhhcc-------CCcCcCCCCCHHHHHHHHHHHHHHHhcC
Confidence 88777777788889999999999986 899999999998877642 2345688889999999999999887778
Q ss_pred HHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC---CE
Q 013204 333 IVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG---DN 408 (447)
Q Consensus 333 ~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g---~~ 408 (447)
+.++++++++++++.|+++ ...+.+..+++.|.++.+++........+ .......+.+.|+++||++.+++ +.
T Consensus 320 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~l~~~l~~~gi~v~~~~~~~~~ 396 (426)
T 1sff_A 320 LLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKP---DAKLTAEIVARARDKGLILLSCGPYYNV 396 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSB---CHHHHHHHHHHHHHTTEECEEESTTSCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCC---ChHHHHHHHHHHHHCCcEEecCCCCCCE
Confidence 8899999999999999887 34566666778899999888542110000 00124568888999999999875 67
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 409 IMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 409 iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+|+++++.+++++|++++++|+++++++
T Consensus 397 iRi~~~~~~~~~~i~~~~~~l~~~l~~~ 424 (426)
T 1sff_A 397 LRILVPLTIEDAQIRQGLEIISQCFDEA 424 (426)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998765
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-45 Score=356.78 Aligned_cols=375 Identities=28% Similarity=0.540 Sum_probs=296.1
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
..+|+++.+++|+++||.||++|+||+++++.+++||.+|++.+++.+++++....+. ..+.+...++++++++++
T Consensus 20 ~~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~la~~~-- 95 (397)
T 2ord_A 20 SRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSN--LFWNRPQMELAELLSKNT-- 95 (397)
T ss_dssp CCCSCEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCT--TSEEHHHHHHHHHHHHTT--
T ss_pred cCCCceEEeeecCEEEECCCCEEEECCccccccccCCCCHHHHHHHHHHHHhcccCcc--ccCCHHHHHHHHHHHHhc--
Confidence 4578999999999999999999999999999999999999999999999987543221 224577889999999986
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCc
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHY 172 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
+.++++|++||++|++.|+++++.+... +.+++++||+++++||+....++...+...+..++.+....+..+++.
T Consensus 96 -g~~~v~~~~gg~~a~~~al~~~~~~~~~-~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~-- 171 (397)
T 2ord_A 96 -FGGKVFFANTGTEANEAAIKIARKYGKK-KSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFN-- 171 (397)
T ss_dssp -TSCEEEEESSHHHHHHHHHHHHHHHHHH-HCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECTT--
T ss_pred -CCCeEEEeCCHHHHHHHHHHHHHHHhhc-CCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecCC--
Confidence 4679999999999999999987643221 123456799999999998776555555432222222211222233321
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc
Q 013204 173 WRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252 (447)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~ 252 (447)
++++|++.+. +++++|+++++++.+|.++++.+++++|.++|++||+++|+||+|+|+++
T Consensus 172 ----------------d~~~l~~~l~----~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~ 231 (397)
T 2ord_A 172 ----------------NVEDLRRKMS----EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGR 231 (397)
T ss_dssp ----------------CHHHHHHHCC----TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred ----------------CHHHHHHHhh----cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCcc
Confidence 1477777664 36899999999999998688899999999999999999999999999988
Q ss_pred cccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhc
Q 013204 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERN 332 (447)
Q Consensus 253 ~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~ 332 (447)
.|..+....+++.||+++|||.+++| +|+|+++++++++ .+. ...+..+++.++++++++.++|+.+.+++
T Consensus 232 ~g~~~~~~~~~~~~d~~s~sK~~~~G-~r~G~~~~~~~~~-~l~-------~~~~~~~~~~~~~~~~a~~~~l~~~~~~~ 302 (397)
T 2ord_A 232 TGKLFAYQKYGVVPDVLTTAKGLGGG-VPIGAVIVNERAN-VLE-------PGDHGTTFGGNPLACRAGVTVIKELTKEG 302 (397)
T ss_dssp TSSSSHHHHHTCCCSEEEECGGGGTT-SCCEEEEECSTTC-CCC-------TTSSCCSSTTCHHHHHHHHHHHHHHTSTT
T ss_pred CccchhhhhhCCCCCeeeeccccCCC-cCeEEEEEchHhc-ccC-------CCCcCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 88765556667779999999999977 7999999998876 543 11345678889999999999999877777
Q ss_pred HHHHHHHHHHHHHHhHhhcc-CCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEE
Q 013204 333 IVEQVNKIAPKFQDGVKAFS-DSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIM 410 (447)
Q Consensus 333 ~~~~~~~~~~~l~~~L~~l~-~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR 410 (447)
+.++++++++++++.|+++. +.+.+..+++.|.++.+.+.... ....+.+.|+++||++.+++ +.+|
T Consensus 303 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----------~~~~l~~~l~~~gi~v~~~~~~~iR 371 (397)
T 2ord_A 303 FLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREEV-----------SNREVATKCFENKLLVVPAGNNTIR 371 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEECTTS-----------CHHHHHHHHHHTTEECEEETTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCceEEEEEEeEEEEEEECChH-----------HHHHHHHHHHHCCCEEccCCCCEEE
Confidence 88999999999999998862 45665566778888888875421 14568889999999999885 6799
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 411 MSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 411 ~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
++|++.++++++++++++|++++++
T Consensus 372 is~~~~~~~e~i~~~~~~l~~~l~~ 396 (397)
T 2ord_A 372 FLPPLTVEYGEIDLAVETLKKVLQG 396 (397)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EECCcCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999988753
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=341.05 Aligned_cols=368 Identities=28% Similarity=0.501 Sum_probs=290.0
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
..+|+++.+++|+++||.+|+.|+||+++.+++++||.+|++.+++.+++++....+. ..+.+...++++++++++.
T Consensus 25 ~~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~la~~~~- 101 (395)
T 1vef_A 25 NKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQ--TLPTPMRGEFYRTLTAILP- 101 (395)
T ss_dssp CCCSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCT--TSCCHHHHHHHHHHHHTSC-
T ss_pred CCCCccEEecccCEEEeCCCCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCCCcc--ccCCHHHHHHHHHHHHhcC-
Confidence 3578899999999999999999999999998899999999999999999976543221 2256788899999999863
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCc
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHY 172 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
.+.+++++++||++|++.+++.++.+. ++++||++++.||+.........+.......+.........++..
T Consensus 102 ~~~~~v~~~~gg~~a~~~al~~~~~~~------~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~-- 173 (395)
T 1vef_A 102 PELNRVFPVNSGTEANEAALKFARAHT------GRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYN-- 173 (395)
T ss_dssp TTEEEEEEESSHHHHHHHHHHHHHHHH------SCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTT--
T ss_pred CCcCEEEEcCcHHHHHHHHHHHHHHHh------CCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCC--
Confidence 366799999999999999999764331 246799999999998766655554432211111111111112211
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc
Q 013204 173 WRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252 (447)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~ 252 (447)
++++|++.+. +++++|+++|+++++|.+.++.+++++|.++|++||+++|+||+|+|+++
T Consensus 174 ----------------d~~~l~~~i~----~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~ 233 (395)
T 1vef_A 174 ----------------DVEALKRAVD----EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGR 233 (395)
T ss_dssp ----------------CHHHHHHHCC----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred ----------------cHHHHHHHhc----cCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCcc
Confidence 1477777664 35789999999888898889999999999999999999999999999988
Q ss_pred cccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhc
Q 013204 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERN 332 (447)
Q Consensus 253 ~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~ 332 (447)
.|..+.++..++.+|+++|||.+++| +|+|++++++++++.+.. ..+..+++.++++++++.++++.+.+++
T Consensus 234 ~g~~~~~~~~~~~~d~~s~sK~~~~g-~~~G~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~a~~~al~~~~~~~ 305 (395)
T 1vef_A 234 TGKRFAFEHFGIVPDILTLAKALGGG-VPLGVAVMREEVARSMPK-------GGHGTTFGGNPLAMAAGVAAIRYLERTR 305 (395)
T ss_dssp TSSSSTHHHHTCCCSEEEECGGGGTT-SSCEEEEEEHHHHHTSCT-------TSSCCSSTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCchhHhhhcCCCCCEEEEcccccCC-CceEEEEehHHHHhhhcc-------CCcCCCcCCCHHHHHHHHHHHHHHHhCC
Confidence 88766566677889999999999987 899999999988777642 1244678889999999999999877667
Q ss_pred HHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEeeC-CEEE
Q 013204 333 IVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVSG-DNIM 410 (447)
Q Consensus 333 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~g-~~iR 410 (447)
+.++++++++++++.|+++. .+.+...++.|.++.+.+... ...+.+.|+ ++||.+.+++ +.+|
T Consensus 306 ~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~g~~~~~~~~~~-------------~~~l~~~l~~~~gi~v~~~~~~~iR 371 (395)
T 1vef_A 306 LWERAAELGPWFMEKLRAIP-SPKIREVRGMGLMVGLELKEK-------------AAPYIARLEKEHRVLALQAGPTVIR 371 (395)
T ss_dssp THHHHHHHHHHHHHHHHTSC-CTTEEEEEEETTEEEEEESSC-------------SHHHHHHHHHHHCEECEESSTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHhh-cCceEEEEEEEEEEEEEEcCh-------------HHHHHHHHHHHCCeEEecCCCCEEE
Confidence 78899999999999998873 244445667788888877531 235778888 9999999875 6799
Q ss_pred EecCCCCCHHHHHHHHHHHHHHH
Q 013204 411 MSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 411 ~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
+++++.++++++++++++|++++
T Consensus 372 i~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 372 FLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999998875
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-41 Score=325.63 Aligned_cols=366 Identities=30% Similarity=0.532 Sum_probs=283.0
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
.+|+++.+++|++++|.+|+.|+||+++...+++||.+|++.+++.+++++...... ..+.....++++++++++. .
T Consensus 9 ~~~~~~~~~~g~~~~~~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~--~y~~~~~~~l~~~la~~~g-~ 85 (375)
T 2eh6_A 9 RLPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSN--LYENPWQEELAHKLVKHFW-T 85 (375)
T ss_dssp CEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCCT--TBCCHHHHHHHHHHHHTSS-S
T ss_pred CCCccEEeeecCEEEeCCCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccCc--ccCCHHHHHHHHHHHhhcC-C
Confidence 478899999999999999999999999988789999999999999999876422111 2245677889999999873 2
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcc
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYW 173 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
++++++++||++|++.++++++.... .+++++++|++.+++||++........+...+...+......+..+++.+
T Consensus 86 -~~~v~~~~g~t~a~~~~~~~~~~~~~-~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-- 161 (375)
T 2eh6_A 86 -EGKVFFANSGTESVEAAIKLARKYWR-DKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLND-- 161 (375)
T ss_dssp -CEEEEEESSHHHHHHHHHHHHHHHHH-HTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECTTC--
T ss_pred -CCeEEEeCchHHHHHHHHHHHHHHhc-cCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCCch--
Confidence 27999999999999999987543321 12345588999999999997766665554432222211111222222211
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcc
Q 013204 174 RYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRL 253 (447)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~ 253 (447)
+++|++.+. +++++|+++|+++.+|.+.++.+++++|.++|++||+++|+||+|++|++.
T Consensus 162 ----------------~~~l~~~l~----~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~ 221 (375)
T 2eh6_A 162 ----------------IDSVYKLLD----EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRT 221 (375)
T ss_dssp ----------------HHHHHTTCC----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred ----------------HHHHHHHhc----CCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCC
Confidence 366666554 368899999999999988899999999999999999999999999999888
Q ss_pred ccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcH
Q 013204 254 GTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNI 333 (447)
Q Consensus 254 g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~ 333 (447)
+..+..+.++..+|++++||.+++| +++|++++++++++.+.. ..+..+++.++++++++.++|+.++ +.
T Consensus 222 ~~~~~~~~~~~~~d~~s~SK~~~~g-~~~G~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~--~~ 291 (375)
T 2eh6_A 222 GEFYAYQHFNLKPDVIALAKGLGGG-VPIGAILAREEVAQSFTP-------GSHGSTFGGNPLACRAGTVVVDEVE--KL 291 (375)
T ss_dssp SSSSGGGGGTCCCSEEEECGGGGTT-SCCEEEEEEHHHHTTCCT-------TSCCCSSTTCHHHHHHHHHHHHHHH--HH
T ss_pred CcchhhhhcCCCCCEEEEcccccCC-CCeEEEEEcHHHHhhhcC-------CCCCCCCCCCHHHHHHHHHHHHHHH--HH
Confidence 7655566677789999999999987 899999999988777642 1244577788999999988888765 67
Q ss_pred HHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEEEe
Q 013204 334 VEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIMMS 412 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR~~ 412 (447)
.++++++++++++.|+++.. ..+++.|.++.+.+..+ ...+.+.|+++||.+.+++ +.+|++
T Consensus 292 ~~~~~~~~~~l~~~L~~~~~----~~~~~~g~~~~~~~~~~-------------~~~~~~~l~~~gi~~~~~~~~~iRi~ 354 (375)
T 2eh6_A 292 LPHVREVGNYFKEKLKELGK----GKVKGRGLMLGLELERE-------------CKDYVLKALEKGLLINCTAGKVLRFL 354 (375)
T ss_dssp HHHHHHHHHHHHHHHHHTTS----SEEEEETTEEEEECSSC-------------CHHHHHHHHHTTEECEEETTTEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHhc----CCceEEEEEEEEEEcCc-------------HHHHHHHHHHCCCEEecCCCCEEEEE
Confidence 78888899999999987622 23456778888877531 2357888899999999874 679999
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q 013204 413 PPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 413 ~~~~~t~e~i~~~~~~l~~~l 433 (447)
+++.++++++++++++|++++
T Consensus 355 ~~~~~~~~~i~~~~~~l~~~l 375 (375)
T 2eh6_A 355 PPLIIQKEHIDRAISVLREIL 375 (375)
T ss_dssp CCTTCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHhC
Confidence 999999999999999998753
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-34 Score=282.22 Aligned_cols=350 Identities=16% Similarity=0.159 Sum_probs=257.1
Q ss_pred CeEEE-EecCcEEEeCCCCEEEecCCccccccCC-CCCHHHHHHHHHHHhcCCc---ccccCcCCChHHHHHHHHHHHhc
Q 013204 16 PLVIE-KSEGSYVYDVNGKKYLDSLAGLWCTALG-GSEPRLVAAATAQLNTLPF---YHSFWNRTTKPSLDLAKELLEMF 90 (447)
Q Consensus 16 ~~~~~-~~~g~~~~d~dg~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~ 90 (447)
+.++. +++|++++| ||++|+||+++ .++| +.||++.+++.+++.+... .+....+..+...++++++++++
T Consensus 47 ~~~~~~~~~g~~~~~-~g~~~id~~~~---~~lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~ 122 (427)
T 2w8t_A 47 AIVMEQVKSPTEAVI-RGKDTILLGTY---NYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFY 122 (427)
T ss_dssp CCCCSEEEETTEEEE-TTEEEEECSCC---CTTCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHH
T ss_pred eeeccccCCCceEee-CCceEEEEECc---ccccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHh
Confidence 44667 999999999 99999999988 4688 6999999999999876321 12223346788899999999997
Q ss_pred CcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC
Q 013204 91 TASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP 170 (447)
Q Consensus 91 ~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (447)
+.+++++++||++|+..+++.+. .+++.|++ +..+|+.....+...+.... .++.
T Consensus 123 ---g~~~~i~~~sGs~a~~~al~~l~--------~~gd~vl~-~~~~h~~~~~~~~~~g~~~~------------~~~~- 177 (427)
T 2w8t_A 123 ---GTTGAIVFSTGYMANLGIISTLA--------GKGEYVIL-DADSHASIYDGCQQGNAEIV------------RFRH- 177 (427)
T ss_dssp ---TCSEEEEESCHHHHHHHHHHHHS--------CTTCEEEE-ETTCCHHHHHHHHHSCSEEE------------EECT-
T ss_pred ---CCCceEEecCcHHHHHHHHHHhc--------CCCCEEEE-CCcccHHHHHHHHHcCCeeE------------EeCC-
Confidence 34578999999999999998763 22345555 55566765555444442211 1111
Q ss_pred CcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCC
Q 013204 171 HYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250 (447)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~ 250 (447)
.++++|++.+....+.++++|+++++++++|.+.+ +++|+++|++||+++|+||+|+++
T Consensus 178 -----------------~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~----l~~l~~l~~~~g~~li~Dea~~~~ 236 (427)
T 2w8t_A 178 -----------------NSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP----LKEMVAVAKKHGAMVLVDEAHSMG 236 (427)
T ss_dssp -----------------TCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTT
T ss_pred -----------------CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEECCcccc
Confidence 11478888887533226789999999999998876 999999999999999999999964
Q ss_pred --CccccccccccCCCCCC----eeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHH
Q 013204 251 --GRLGTMFGCDKYSIKPD----LVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEA 324 (447)
Q Consensus 251 --g~~g~~~~~~~~~~~~d----~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~ 324 (447)
++.|.. ..+.+++.+| +.++||+++ .+.|++++++++++.+.... ..+ ..+.+.+++.++++.++
T Consensus 237 ~~~~~g~~-~~~~~~~~~~~di~~~s~sK~~g---~~gG~v~~~~~l~~~l~~~~---~~~--~~~~~~~~~~~aa~~~a 307 (427)
T 2w8t_A 237 FFGPNGRG-VYEAQGLEGQIDFVVGTFSKSVG---TVGGFVVSNHPKFEAVRLAC---RPY--IFTASLPPSVVATATTS 307 (427)
T ss_dssp TSSTTSCC-HHHHTTCTTCCSEEEEESSSTTC---SCCEEEEECCTTGGGGGGTC---HHH--HSSCCCCHHHHHHHHHH
T ss_pred ccCCCCCc-hHhhcCCCcCCcEEEecchhhhc---cCCCEEEeCHHHHHHHHHhc---ccc--cccCCCCHHHHHHHHHH
Confidence 222322 3455666555 557899996 35599999999988876321 111 23567789999988899
Q ss_pred HHHHhh-hcHHHHHHHHHHHHHHhHhhccCCCceeeEee-eeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceE
Q 013204 325 LKIYKE-RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRG-TGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLV 402 (447)
Q Consensus 325 l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~ 402 (447)
++.++. ++..++++++++++++.|+++ +.++. ..+ .|.++.+.+.+.. ....+.+.|+++||++
T Consensus 308 l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~~~~~~-----------~~~~l~~~L~~~Gi~v 373 (427)
T 2w8t_A 308 IRKLMTAHEKRERLWSNARALHGGLKAM-GFRLG--TETCDSAIVAVMLEDQE-----------QAAMMWQALLDGGLYV 373 (427)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHHHHHHH-TCEES--CSSCCSSEEEEEESSHH-----------HHHHHHHHHHHTTEEC
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCccc--CCCCCCCEEEEEECCHH-----------HHHHHHHHHHHCCeEE
Confidence 998765 667889999999999999886 32221 123 5677777775311 2456889999999999
Q ss_pred EeeC--------CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 403 RVSG--------DNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 403 ~~~g--------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
.++. +.+|++++..+++++|++++++|+++++++.+
T Consensus 374 ~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~~~ 417 (427)
T 2w8t_A 374 NMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAVGV 417 (427)
T ss_dssp EEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred eeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCc
Confidence 8762 36999999999999999999999999887653
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-35 Score=287.57 Aligned_cols=356 Identities=10% Similarity=0.033 Sum_probs=254.6
Q ss_pred CCeEEEEecCcEEEeCC--CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-
Q 013204 15 HPLVIEKSEGSYVYDVN--GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT- 91 (447)
Q Consensus 15 ~~~~~~~~~g~~~~d~d--g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~- 91 (447)
.+++..++.|+++||.+ |++||||..+. ..+ +.+|+|.+++.+++++....++. ...+...++++++.+.+.
T Consensus 41 ~~~~~~~g~g~~~~d~~~~g~~~i~~~~~~--~~~-~~~~~v~~a~~~~~~~~~~~y~~--~~~~l~~~l~~~l~~~~g~ 115 (421)
T 3l8a_A 41 TTRPDRLNQFTYKWKTSENNPELLQMWVAD--MDF-LPVPEIKEAIINYGREHIFGYNY--FNDDLYQAVIDWERKEHDY 115 (421)
T ss_dssp SCCCCCTTTTBTTTGGGTTCTTCEECCSSC--CCS-CCCHHHHHHHHHHHHHCCSSCBC--CCHHHHHHHHHHHHHHHCC
T ss_pred CcccccCCCCCccccccCCCCCeeecccCC--CCC-CCCHHHHHHHHHHHhcCCcCCCC--CCHHHHHHHHHHHHHHhCC
Confidence 35667789999999999 89999997662 334 48999999999999764333322 234556677777777653
Q ss_pred cCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC-
Q 013204 92 ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP- 170 (447)
Q Consensus 92 ~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 170 (447)
..+.++++|++||++|++.|++.++ ..+++|++.+++||+........+.... .+++.
T Consensus 116 ~~~~~~v~~~~g~~ea~~~a~~~~~--------~~gd~Vi~~~~~y~~~~~~~~~~g~~~~-------------~~~~~~ 174 (421)
T 3l8a_A 116 AVVKEDILFIDGVVPAISIALQAFS--------EKGDAVLINSPVYYPFARTIRLNDHRLV-------------ENSLQI 174 (421)
T ss_dssp CCCGGGEEEESCHHHHHHHHHHHHS--------CTEEEEEEEESCCHHHHHHHHHTTEEEE-------------EEECEE
T ss_pred CCCHHHEEEcCCHHHHHHHHHHHhc--------CCCCEEEECCCCcHHHHHHHHHCCCEEE-------------eccccc
Confidence 1467799999999999999999874 3357899999999998765554332111 11110
Q ss_pred --CcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc
Q 013204 171 --HYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC 248 (447)
Q Consensus 171 --~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~ 248 (447)
..+. .++++|++.+.. +++++|+++++++++| ++++++++++|+++|++||++||+||+|+
T Consensus 175 ~~~~~~-------------~d~~~le~~i~~---~~~~~vil~~p~nptG-~~~~~~~l~~l~~l~~~~~~~li~De~~~ 237 (421)
T 3l8a_A 175 INGRFE-------------IDFEQLEKDIID---NNVKIYLLCSPHNPGG-RVWDNDDLIKIAELCKKHGVILVSDEIHQ 237 (421)
T ss_dssp ETTEEE-------------CCHHHHHHHHHH---TTEEEEEEESSBTTTT-BCCCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred cCCCee-------------eCHHHHHHHhhc---cCCeEEEECCCCCCCC-CcCCHHHHHHHHHHHHHcCCEEEEEcccc
Confidence 0000 014788888763 3577888898898888 67788889999999999999999999999
Q ss_pred CCCcccccc-ccc-----cCCCCCCeeeecccCCCcccceeEEEeC-hhHHHHhhhccCCCCccCcCCCCCCcHHHHHHH
Q 013204 249 AFGRLGTMF-GCD-----KYSIKPDLVSFAKALSSAYMPIGAILVS-PEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVA 321 (447)
Q Consensus 249 g~g~~g~~~-~~~-----~~~~~~d~v~~sK~l~gg~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa 321 (447)
++++.|..+ .+. ..+..+++.++||+++.+++|+|+++++ +++++.+... .....++++++++++++
T Consensus 238 ~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~------~~~~~~~~~n~~~~~a~ 311 (421)
T 3l8a_A 238 DLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYR------QLANNQHEVPTVGMIAT 311 (421)
T ss_dssp TCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHH------HHHTTCSCCCHHHHHHH
T ss_pred ccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHH------HHhcccCCCCHHHHHHH
Confidence 998887532 111 1233455778899998433899999998 8888887642 11234567899999999
Q ss_pred HHHHHHHhh--hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEE-EEeecCCCCCCCCCCCcchHHHHHHHHHH-
Q 013204 322 IEALKIYKE--RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILG-TEFADNKSPNEPFPPEWGIGAYFGAQCEK- 397 (447)
Q Consensus 322 ~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 397 (447)
.++++..++ ++..++++++.+++++.|+++ +.+..+++.|.++. +++...... ...+.+.|++
T Consensus 312 ~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~i~~~~~~~~~~~~v~~~~~~~~----------~~~l~~~l~~~ 378 (421)
T 3l8a_A 312 QAAFQYGKPWLEELKTVIEGNIKLVIKELEAK---TKIKVMEPEGTYLVWLDFSAYAIA----------QPQLSEKLQNE 378 (421)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH---CSCEEECCSBSSEEEEECGGGTCC----------TTHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHhC---CCceEeCCCeeEEEEEeccccCCC----------HHHHHHHHHHh
Confidence 999874321 345566777777777777765 44455666776655 777642111 2347788875
Q ss_pred cCceEEee-------CCEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 398 HGMLVRVS-------GDNIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 398 ~Gi~~~~~-------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
.||++.++ .+.+|++++ +++++|++++++|+++++
T Consensus 379 ~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 379 AKVVLNDGAHFGKEGKYFARLNVA--TPKNTVQEALSRIISVFG 420 (421)
T ss_dssp TCEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHHC-
T ss_pred CCEEEECchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 59999874 267999966 799999999999998874
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-32 Score=264.82 Aligned_cols=349 Identities=17% Similarity=0.251 Sum_probs=254.2
Q ss_pred CCeEEEEecCcEEEeCCCCEEEecCCccccccCC-CCCHHHHHHHHHHHhcCCcc---cccCcCCChHHHHHHHHHHHhc
Q 013204 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALG-GSEPRLVAAATAQLNTLPFY---HSFWNRTTKPSLDLAKELLEMF 90 (447)
Q Consensus 15 ~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~ 90 (447)
.+.++.+++|.+++| ||++|+||.++ +++| |.+|++.+++.+++.+.... +....+..+...++++++++++
T Consensus 26 ~~~~~~~~~g~~v~~-~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~ 101 (399)
T 3tqx_A 26 SERIITSPQNAEIKV-GEKEVLNFCAN---NYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFL 101 (399)
T ss_dssp CCCCBCSCSSSEEEE-TTEEEEECSSC---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHH
T ss_pred ccccccCCCCceEee-CCeeEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHH
Confidence 467789999999999 99999999988 7788 78999999999998764322 1122345677889999999987
Q ss_pred CcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC
Q 013204 91 TASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP 170 (447)
Q Consensus 91 ~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (447)
. .++.+++++|++|+..+++.+. .+++.|++..+.| +.........+.... .++..
T Consensus 102 ~---~~~~i~~~sGt~a~~~~l~~~~--------~~gd~v~~~~~~~-~~~~~~~~~~g~~~~------------~~~~~ 157 (399)
T 3tqx_A 102 G---TDDTILYSSCFDANGGLFETLL--------GPEDAIISDELNH-ASIIDGIRLCKAQRY------------RYKNN 157 (399)
T ss_dssp T---CSEEEEESCHHHHHHTTHHHHC--------CTTCEEEEETTCC-HHHHHHHHSCCSEEE------------EECTT
T ss_pred C---CCcEEEECchHHHHHHHHHHhc--------CCCCEEEECCccc-HHHHHHHHHcCCcee------------EeCCC
Confidence 3 3467778889999999998763 2345666655544 554444443433211 11111
Q ss_pred CcccCCCCCCChhHHHHHHHHHHHHHHHhhCC--CcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc
Q 013204 171 HYWRYAHPGETEEEYSTRLANNLEDLILKEGP--ETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC 248 (447)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~--~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~ 248 (447)
+ +++|++.+..... .++++|+++++++.+|.+.+ +++|.++|++||+++|+||+|.
T Consensus 158 d------------------~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~ 215 (399)
T 3tqx_A 158 A------------------MGDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD----LKSICDLADKYNALVMVDDSHA 215 (399)
T ss_dssp C------------------TTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTT
T ss_pred C------------------HHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCcc
Confidence 1 2667777765322 26789999999999998876 9999999999999999999995
Q ss_pred -CC-CccccccccccCCC--CCCee--eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHH
Q 013204 249 -AF-GRLGTMFGCDKYSI--KPDLV--SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAI 322 (447)
Q Consensus 249 -g~-g~~g~~~~~~~~~~--~~d~v--~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~ 322 (447)
|+ +..+. ...+.+++ .+|++ ++||.++ | ++.|++++++++++.+.... .. ...+.+.++++++++.
T Consensus 216 ~~~~~~~~~-~~~~~~~~~~~~di~~~s~sK~~~-g-~~gG~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~ 287 (399)
T 3tqx_A 216 VGFIGENGR-GTPEYCGVADRVDILTGTLGKALG-G-ASGGYTSGHKEIIEWLRNRS---RP--YLFSNTVAPVIVATSL 287 (399)
T ss_dssp TTTSSTTSC-CHHHHHTCTTCCSEEEEESSSSSC-S-SCCEEEEECHHHHHHHHHHC---HH--HHSSCCCCHHHHHHHH
T ss_pred ccccCCCCC-chHHhhCCCCCCcEEEecchHhcc-c-CceEEEEcCHHHHHHHHHhC---cc--eeccCCCcHHHHHHHH
Confidence 43 33332 23455565 68888 7899998 4 57799999999988886421 01 1124467888999999
Q ss_pred HHHHHH-h-hhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCc
Q 013204 323 EALKIY-K-ERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGM 400 (447)
Q Consensus 323 a~l~~~-~-~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 400 (447)
++++.. + .++..++++++.+++++.|+++ +..+. .+.|.++.+.+.... ....+.+.|+++||
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~---~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~gi 352 (399)
T 3tqx_A 288 KVLELLKTEGPQLRKQLQENSRYFRAGMEKL-GFQLV---PGNHPIIPVMLGDAQ-----------LATNMADHLLQEGI 352 (399)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-TCCBC---CCSSSEEEEEEECHH-----------HHHHHHHHHHHTTE
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHc-CCCcC---CCCCCEEEEEeCCHH-----------HHHHHHHHHHHCCC
Confidence 999876 3 3567788899999999999887 33322 556777777775421 24568899999999
Q ss_pred eEEeeC--------CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 401 LVRVSG--------DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 401 ~~~~~g--------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
++.+.. +.+|++++..++++++++++++|+++++++
T Consensus 353 ~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 353 YVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKKL 396 (399)
T ss_dssp ECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred EEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHHHHh
Confidence 988542 369999998999999999999999998764
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-32 Score=265.97 Aligned_cols=351 Identities=19% Similarity=0.234 Sum_probs=252.5
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCC-CCHHHHHHHHHHHhcCCccc---ccCcCCChHHHHHHHHHHHh
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLPFYH---SFWNRTTKPSLDLAKELLEM 89 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~ 89 (447)
.+|.++.+++|++++|.||++|+||.++ +++|+ .+|++.+++.+++.+....+ ....+..+...+++++++++
T Consensus 26 ~~~~~~~~~~g~~~~~~~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~ 102 (401)
T 1fc4_A 26 KEERIITSAQQADITVADGSHVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAF 102 (401)
T ss_dssp CCCCCBCSCSSSEEEBTTSCEEEECCCS---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHH
T ss_pred eeeeeeccCCCceEEeeCCccEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHH
Confidence 4678899999999999999999999888 57996 89999999999987633211 11112356788999999999
Q ss_pred cCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCC
Q 013204 90 FTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDC 169 (447)
Q Consensus 90 ~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (447)
+. .++.+++++|++|+..+++.+. .+++.|++.. .+|+.....+...|... ..++.
T Consensus 103 ~g---~~~~i~~~sGs~a~~~~~~~~~--------~~gd~v~~~~-~~~~~~~~~~~~~g~~~------------~~~~~ 158 (401)
T 1fc4_A 103 LG---MEDAILYSSCFDANGGLFETLL--------GAEDAIISDA-LNHASIIDGVRLCKAKR------------YRYAN 158 (401)
T ss_dssp HT---CSEEEEESCHHHHHHTTHHHHC--------CTTCEEEEET-TCCHHHHHHHHTSCSEE------------EEECT
T ss_pred hC---CCcEEEeCChHHHHHHHHHHHc--------CCCCEEEEcc-hhHHHHHHHHHHcCCce------------EEECC
Confidence 73 2367788899999999988763 2234555554 45555544444333221 11111
Q ss_pred CCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCC--cEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhh
Q 013204 170 PHYWRYAHPGETEEEYSTRLANNLEDLILKEGPE--TIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVI 247 (447)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~--~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~ 247 (447)
. +++++++.+....++ ++++|+++++++.+|.+.+ +++|.++|++||+++|+||+|
T Consensus 159 ~------------------d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~De~~ 216 (401)
T 1fc4_A 159 N------------------DMQELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSH 216 (401)
T ss_dssp T------------------CHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTT
T ss_pred C------------------CHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCC----HHHHHHHHHHcCCEEEEECcc
Confidence 0 136777777642211 4678888998888887776 999999999999999999999
Q ss_pred c-CCC-ccccccccccCCCC--CCee--eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHH
Q 013204 248 C-AFG-RLGTMFGCDKYSIK--PDLV--SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVA 321 (447)
Q Consensus 248 ~-g~g-~~g~~~~~~~~~~~--~d~v--~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa 321 (447)
+ |+. +.|..+ .+..++. .|++ ++||.++++ . .|++++++++++.+..... ....+++.++++++++
T Consensus 217 ~~g~~~~~g~~~-~~~~~~~~~~di~~~s~sK~~~~~-~-gG~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~a~ 288 (401)
T 1fc4_A 217 AVGFVGENGRGS-HEYCDVMGRVDIITGTLGKALGGA-S-GGYTAARKEVVEWLRQRSR-----PYLFSNSLAPAIVAAS 288 (401)
T ss_dssp TTTTSSTTSCCH-HHHTTCTTCCSEEEEESSSTTCSS-S-CEEEEECHHHHHHHHHHCH-----HHHHSCCCCHHHHHHH
T ss_pred cccccCCCCCcc-HHHcCCCcCCcEEEecchhhccCC-C-CEEEEcCHHHHHHHHHhCc-----CceeCCCCCHHHHHHH
Confidence 5 773 445432 2334443 4777 789999665 3 4999999999888764210 1112557789999999
Q ss_pred HHHHHHHhh-hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCc
Q 013204 322 IEALKIYKE-RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGM 400 (447)
Q Consensus 322 ~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 400 (447)
.++++.+.. ++..++++++++++++.|+++ +..+. .+.|.++.+.+.... ....+.+.|.++||
T Consensus 289 ~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~---~~~~~~~~~~~~~~~-----------~~~~l~~~l~~~gi 353 (401)
T 1fc4_A 289 IKVLEMVEAGSELRDRLWANARQFREQMSAA-GFTLA---GADHAIIPVMLGDAV-----------VAQKFARELQKEGI 353 (401)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT-TCCBC---CSSSSEEEEEEECHH-----------HHHHHHHHHHHTTE
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCccc---CCCCCEEEEEcCChH-----------HHHHHHHHHHHCCc
Confidence 999987753 567788899999999999876 33332 356777778775311 24568889999999
Q ss_pred eEEeeC--------CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 401 LVRVSG--------DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 401 ~~~~~g--------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
++.++. +.+|++++..++++++++++++|+++++++
T Consensus 354 ~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 397 (401)
T 1fc4_A 354 YVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp ECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred EEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 988753 359999988899999999999999998764
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-32 Score=263.05 Aligned_cols=359 Identities=11% Similarity=0.048 Sum_probs=246.9
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-c
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-A 92 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~ 92 (447)
.|+++..+++|+++||.+|++|+||..+. ..+ +.+|++.+++.+++.+....+.. ...+...++++.+.+.+. +
T Consensus 8 ~f~~~~~~~~g~~~~d~~g~~~i~~~~~~--~~~-~~~~~v~~a~~~~~~~~~~~y~~--~~~~l~~~la~~l~~~~g~~ 82 (391)
T 3dzz_A 8 DFTHVPKRQGNSIKWGVLKEKELPMWIAE--MDF-KIAPEIMASMEEKLKVAAFGYES--VPAEYYKAVADWEEIEHRAR 82 (391)
T ss_dssp CCSSCCCCCTTBTTTTTCCTTCEECCSSC--CSS-CCCHHHHHHHHHHHTTCCCCCBC--CCHHHHHHHHHHHHHHHSCC
T ss_pred ccchhccCCCCccceeccCCCceeccccC--CCC-CCCHHHHHHHHHHHhcCcCCCCC--CCHHHHHHHHHHHHHHhCCC
Confidence 34456678999999999999999998773 334 48999999999998764333221 134455667777766653 1
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC--
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP-- 170 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 170 (447)
.+.+++++++||++|++.+++.+. .++++|++.+++||+........+.... .++..
T Consensus 83 ~~~~~i~~~~g~~~a~~~~~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~-------------~~~~~~~ 141 (391)
T 3dzz_A 83 PKEDWCVFASGVVPAISAMVRQFT--------SPGDQILVQEPVYNMFYSVIEGNGRRVI-------------SSDLIYE 141 (391)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHHS--------CTTCEEEECSSCCHHHHHHHHHTTCEEE-------------ECCCEEE
T ss_pred CCHHHEEECCCHHHHHHHHHHHhC--------CCCCeEEECCCCcHHHHHHHHHcCCEEE-------------Eeeeeec
Confidence 457799999999999999999873 3357899999999997655544322111 11110
Q ss_pred -CcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcC
Q 013204 171 -HYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA 249 (447)
Q Consensus 171 -~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g 249 (447)
..+. .++++|++.+.. .++++|+++..++.+|. .++.+.+++|+++|++||+++|+||+|++
T Consensus 142 ~~~~~-------------~d~~~l~~~l~~---~~~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~ 204 (391)
T 3dzz_A 142 NSKYS-------------VNWADLEEKLAT---PSVRMMVFCNPHNPIGY-AWSEEEVKRIAELCAKHQVLLISDEIHGD 204 (391)
T ss_dssp TTEEE-------------CCHHHHHHHHTS---TTEEEEEEESSBTTTTB-CCCHHHHHHHHHHHHHTTCEEEEECTTTT
T ss_pred CCcee-------------ecHHHHHHHHhc---cCceEEEEECCCCCCCc-ccCHHHHHHHHHHHHHCCCEEEEeccccc
Confidence 0000 014778887752 35667766766777775 45677899999999999999999999998
Q ss_pred CCccccc-cccccCCC-CCC----eeeecccCCCcccceeEEEeC-hhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHH
Q 013204 250 FGRLGTM-FGCDKYSI-KPD----LVSFAKALSSAYMPIGAILVS-PEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAI 322 (447)
Q Consensus 250 ~g~~g~~-~~~~~~~~-~~d----~v~~sK~l~gg~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~ 322 (447)
+++.|.. .....++. .+| +.++||.++.+++++|+++++ +++++.+.... ....+++.++++++++.
T Consensus 205 ~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~a~~ 278 (391)
T 3dzz_A 205 LVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESF------FLAGIGEPNLLAIPAAI 278 (391)
T ss_dssp CBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHH------HHHTCSSCCTTHHHHHH
T ss_pred ccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEECCHHHHHHHHHHH------HhhccCCCCHHHHHHHH
Confidence 8777642 23333332 267 446789987333899999997 88888876321 11235667888888888
Q ss_pred HHHHHHh--hhcHHHHHHHHHHHHHHhHhh-ccCCCceeeEeeee-eEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-H
Q 013204 323 EALKIYK--ERNIVEQVNKIAPKFQDGVKA-FSDSPIIGEIRGTG-LILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-K 397 (447)
Q Consensus 323 a~l~~~~--~~~~~~~~~~~~~~l~~~L~~-l~~~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ 397 (447)
++++... .++..++++++.+++.+.|++ +++. ....+.+ .+..+.+..... ....+.+.|+ +
T Consensus 279 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~ 345 (391)
T 3dzz_A 279 AAYEEGHDWLRELKQVLRDNFAYAREFLAKEVPEV---KVLDSNASYLAWVDISALGM----------NAEDFCKYLREK 345 (391)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTS---EECCCCBSSEEEEECGGGCS----------CHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCc---EEeccCceEEEEEehhhcCC----------CHHHHHHHHHHh
Confidence 8887522 244566777777888888877 4332 2223333 344466654211 1456888886 8
Q ss_pred cCceEEeeC-------CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 398 HGMLVRVSG-------DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 398 ~Gi~~~~~g-------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+||.+.++. +.+|++++ +++++|++++++|+++++++
T Consensus 346 ~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l~~~ 389 (391)
T 3dzz_A 346 TGLIISAGNGYRGNGHEFVRINLA--CPKELVIDGMQRLKQGVLNL 389 (391)
T ss_dssp HCEECEESGGGCTTGGGEEEEECC--SCHHHHHHHHHHHHHHHHTC
T ss_pred CCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence 999998752 56999965 79999999999999998754
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-31 Score=261.42 Aligned_cols=338 Identities=17% Similarity=0.162 Sum_probs=244.2
Q ss_pred EecCcEEEeCCCCEEEecCCccccccCCC-CCHHHHHHHHHHHhcCCc---ccccCcCCChHHHHHHHHHHHhcCcCCCC
Q 013204 21 KSEGSYVYDVNGKKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLPF---YHSFWNRTTKPSLDLAKELLEMFTASKMA 96 (447)
Q Consensus 21 ~~~g~~~~d~dg~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 96 (447)
++.+.++.|.||++|+||+++ +++|+ .||++.+++.+++++... .+....+..+...++++++++++ +.+
T Consensus 47 ~~~~~~~~~~~g~~~ld~~s~---~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~---g~~ 120 (409)
T 3kki_A 47 NGKHLVLGKQASPDDIILQSN---DYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFT---GFD 120 (409)
T ss_dssp TSSCTTCCCCCCTTSEECCCS---CTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHH---TCS
T ss_pred CCCeeeeCCCCCCceEEeecc---CccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHh---CCC
Confidence 456777888899999999886 45565 689999999999987432 12233345566778999999987 345
Q ss_pred eEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCC
Q 013204 97 KVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYA 176 (447)
Q Consensus 97 ~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (447)
..+++++|++|++.+++.+. .+++.|++ +..+|+....+....+.... .++..
T Consensus 121 ~~i~~~sGt~a~~~~l~~~~--------~~gd~Vl~-~~~~~~~~~~~~~~~g~~~~------------~~~~~------ 173 (409)
T 3kki_A 121 ECLLSQSGWNANVGLLQTIC--------QPNTNVYI-DFFAHMSLWEGARYANAQAH------------PFMHN------ 173 (409)
T ss_dssp EEEEESCHHHHHHHHHHHHC--------CTTCEEEE-ETTSCHHHHHHHHHTTCEEE------------EECTT------
T ss_pred eEEEecchHHHHHHHHHHhc--------CCCCEEEE-CCCcCHHHHHHHHHcCCeEE------------EecCC------
Confidence 67888999999999999763 23355555 45555655444444433211 11111
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcC--CCccc
Q 013204 177 HPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA--FGRLG 254 (447)
Q Consensus 177 ~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g--~g~~g 254 (447)
++++|++.+... .+++|+++++++++|.+.+ +++|+++|++||++||+||+|++ +|+.|
T Consensus 174 ------------d~~~le~~l~~~---~~~~vi~~~~~nptG~~~~----l~~l~~la~~~~~~li~De~~~~g~~g~~g 234 (409)
T 3kki_A 174 ------------NCDHLRMLIQRH---GPGIIVVDSIYSTLGTIAP----LAELVNISKEFGCALLVDESHSLGTHGPNG 234 (409)
T ss_dssp ------------CHHHHHHHHHHH---CSCEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGG
T ss_pred ------------CHHHHHHHHHhc---CCeEEEECCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCC
Confidence 147888888753 2479999999999998877 99999999999999999999997 77776
Q ss_pred cccccccCCC--CCCe--eeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh
Q 013204 255 TMFGCDKYSI--KPDL--VSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE 330 (447)
Q Consensus 255 ~~~~~~~~~~--~~d~--v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~ 330 (447)
..+. ..+++ .+|+ .++||+++++ .|++++++++++.+.... ..+ ..+...++++++++.++++.++.
T Consensus 235 ~~~~-~~~~~~~~~di~~~s~sK~~~~~---gg~v~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~aa~~aal~~~~~ 305 (409)
T 3kki_A 235 AGLL-AELGLTREVHFMTASLAKTFAYR---AGAIWCNNEVNRCVPFIS---YPA--IFSSTLLPYEAAGLETTLEIIES 305 (409)
T ss_dssp CCHH-HHHTCGGGCSEEEEESSSTTCSS---CEEEEESSSGGGTHHHHC---HHH--HHSBCCCHHHHHHHHHHHHHHHH
T ss_pred Ccch-hhcCCCCCCCEEEeecchhhCCC---ceEEEECHHHHHHHHHhC---cCc--cccCCCcHHHHHHHHHHHHHHhc
Confidence 5543 44455 4677 4689999875 489999998887765321 011 11234678889999999988765
Q ss_pred -hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee----
Q 013204 331 -RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS---- 405 (447)
Q Consensus 331 -~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---- 405 (447)
+++.++++++++++++.|+++ ...+. +.+.++.+.+.... ....+.+.|+++||++.+.
T Consensus 306 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~----~~~~~~~~~~~~~~-----------~~~~~~~~L~~~Gv~v~~~~~~~ 369 (409)
T 3kki_A 306 ADNRRQHLDRMARKLRIGLSQL-GLTIR----SESQIIGLETGDER-----------NTEKVRDYLESNGVFGSVFCRPA 369 (409)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTT-TCCCC----CSSSEEEEEEESHH-----------HHHHHHHHHHHTTEECEEECTTS
T ss_pred CHHHHHHHHHHHHHHHHHHHHc-CCccC----CCCCEEEEEeCCHH-----------HHHHHHHHHHHCCceEeeeCCCC
Confidence 467788889999999999876 32222 46677777775421 2445888999999998653
Q ss_pred ---C-CEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 406 ---G-DNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 406 ---g-~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+ +.+|++++..+|+++|++++++|+++++.
T Consensus 370 ~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 370 TSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp SCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence 1 46999999999999999999999998864
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.7e-30 Score=253.26 Aligned_cols=349 Identities=17% Similarity=0.198 Sum_probs=250.1
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCC-CCHHHHHHHHHHHhcCCcc---cccCcCCChHHHHHHHHHHHh
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLPFY---HSFWNRTTKPSLDLAKELLEM 89 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~ 89 (447)
.+|+++.+++|++++ .||+.++||.++ .++|+ .+|++.+++.+++.+.... +....+..+...++++++++.
T Consensus 25 ~~~~~~~~~~g~~~~-~~g~~~idl~~~---~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~ 100 (398)
T 3a2b_A 25 AYFRPIQSKQDTEVK-IDGRRVLMFGSN---SYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAY 100 (398)
T ss_dssp CSSCCBCSCSSSEEE-ETTEEEEECSCS---CTTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHH
T ss_pred cceeeecCCCCceEE-ECCceEEEeecc---cccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHH
Confidence 468889999999999 999999999888 33677 7999999999988653221 122234567888999999988
Q ss_pred cCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCC
Q 013204 90 FTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDC 169 (447)
Q Consensus 90 ~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (447)
+ +.+++++++||++|++.+++.+. .+++.|++.++.|.+. .......|... ..++.
T Consensus 101 ~---g~~~v~~~~ggt~a~~~~~~~~~--------~~gd~V~~~~p~~~~~-~~~~~~~g~~~------------~~v~~ 156 (398)
T 3a2b_A 101 V---GKEAAILFSTGFQSNLGPLSCLM--------GRNDYILLDERDHASI-IDGSRLSFSKV------------IKYGH 156 (398)
T ss_dssp H---TCSEEEEESSHHHHHHHHHHHSS--------CTTCEEEEETTCCHHH-HHHHHHSSSEE------------EEECT
T ss_pred h---CCCcEEEECCHHHHHHHHHHHHh--------CCCCEEEECCccCHHH-HHHHHHcCCce------------EEeCC
Confidence 7 34699999999999999999763 2346677776665444 33333333221 11221
Q ss_pred CCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcC
Q 013204 170 PHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA 249 (447)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g 249 (447)
.+ +++|++.+....++++++|+++++++.+|.+.+ +++|.++|++||+++|+||+|+.
T Consensus 157 ~d------------------~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~----~~~l~~~~~~~~~~li~De~~~~ 214 (398)
T 3a2b_A 157 NN------------------MEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN----LPELTSIANEFDAAVMVDDAHSL 214 (398)
T ss_dssp TC------------------HHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTT
T ss_pred CC------------------HHHHHHHHHhhccCCceEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCCcc
Confidence 11 378888887532225778889999888887776 99999999999999999999974
Q ss_pred C--CccccccccccCCCC--CCee--eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHH
Q 013204 250 F--GRLGTMFGCDKYSIK--PDLV--SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIE 323 (447)
Q Consensus 250 ~--g~~g~~~~~~~~~~~--~d~v--~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a 323 (447)
+ ++.+... .+.+++. +|++ ++||.++.. + |++++++++++.+.... .....+...+++.++++.+
T Consensus 215 ~~~~~~~~~~-~~~~~~~~~~di~~~s~sK~~~~~--G-G~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~a~~~~ 285 (398)
T 3a2b_A 215 GVIGHKGAGT-ASHFGLNDDVDLIMGTFSKSLASL--G-GFVAGDADVIDFLKHNA-----RSVMFSASMTPASVASTLK 285 (398)
T ss_dssp TTSSGGGCCH-HHHHTCGGGCSEEEEESSSTTCSS--C-EEEEECHHHHHHHHHHC-----HHHHSSBCCCHHHHHHHHH
T ss_pred cccCCCCCch-HhhcCCCcCCeEEEecccccccCC--C-cEEEeCHHHHHHHHHhc-----ccceecCCCCHHHHHHHHH
Confidence 3 3333322 3334543 6888 789999742 2 88999999988876420 0122344567777767777
Q ss_pred HHHHHhh-hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceE
Q 013204 324 ALKIYKE-RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLV 402 (447)
Q Consensus 324 ~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~ 402 (447)
+|+..+. ++..++++++.+++.+.|+++ +..+. .+.|.++.+.+.... ....+.+.|+++||.+
T Consensus 286 ~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~---~~~g~~~~~~~~~~~-----------~~~~l~~~l~~~gi~v 350 (398)
T 3a2b_A 286 ALEIIQNEPEHIEKLWKNTDYAKAQLLDH-GFDLG---ATESPILPIFIRSNE-----------KTFWVTKMLQDDGVFV 350 (398)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHHHHHHHT-TCCBC---SCCSSEEEEECCCHH-----------HHHHHHHHHHHTTEEC
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHHHhc-CCCcC---CCCCCEEEEEcCCHH-----------HHHHHHHHHHHCCcEE
Confidence 8876543 457788888999999999876 33322 345677777764211 2456888999999999
Q ss_pred EeeC--------CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 403 RVSG--------DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 403 ~~~g--------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.++. +.+|++++..++++++++++++|+++++++
T Consensus 351 ~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~ 392 (398)
T 3a2b_A 351 NPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQA 392 (398)
T ss_dssp EEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 8762 569999888889999999999999998764
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.4e-31 Score=257.56 Aligned_cols=350 Identities=12% Similarity=0.077 Sum_probs=238.1
Q ss_pred eEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc-CCC
Q 013204 17 LVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA-SKM 95 (447)
Q Consensus 17 ~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~ 95 (447)
+-..+++|+++||.||++|+||.++. ++++ .+|++.+++.+++.+....+.. .+ .+....+++.+.+.+.. .+.
T Consensus 7 ~~~~~~~g~~~~d~~g~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~ 81 (377)
T 3fdb_A 7 IEDLRARNTMKWTRYGQGVLPLWVAE--SDFS-TCPAVLQAITDAVQREAFGYQP-DG-SLLSQATAEFYADRYGYQARP 81 (377)
T ss_dssp HHHHHHTCCHHHHSSCTTSEECCSSC--CCSC-CCHHHHHHHHHHHHTTCCSSCC-SS-CCHHHHHHHHHHHHHCCCCCG
T ss_pred HHHhcCCCCceeeccCCCeeeecccC--CCCC-CCHHHHHHHHHHHHcCCCCCCC-CC-HHHHHHHHHHHHHHhCCCCCH
Confidence 33458999999999999999998874 4555 7999999999999763332222 22 45555666666554321 356
Q ss_pred CeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccC
Q 013204 96 AKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRY 175 (447)
Q Consensus 96 ~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (447)
+++++++||++|++.+++.+. .++++|++.+++||+........+.... .++....
T Consensus 82 ~~i~~t~g~~~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~-------------~~~~~~~--- 137 (377)
T 3fdb_A 82 EWIFPIPDVVRGLYIAIDHFT--------PAQSKVIVPTPAYPPFFHLLSATQREGI-------------FIDATGG--- 137 (377)
T ss_dssp GGEEEESCHHHHHHHHHHHHS--------CTTCCEEEEESCCTHHHHHHHHHTCCEE-------------EEECTTS---
T ss_pred HHEEEeCChHHHHHHHHHHhc--------CCCCEEEEcCCCcHhHHHHHHHcCCEEE-------------EccCCCC---
Confidence 799999999999999999763 2347899999999998655544332211 1111100
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccc-
Q 013204 176 AHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLG- 254 (447)
Q Consensus 176 ~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g- 254 (447)
.+++++++.+.. +..++++++| ++.+|. ..+.+.+++|+++|++||+++|+||+|+++++.|
T Consensus 138 ------------~d~~~l~~~l~~---~~~~v~i~~p-~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~ 200 (377)
T 3fdb_A 138 ------------INLHDVEKGFQA---GARSILLCNP-YNPLGM-VFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQ 200 (377)
T ss_dssp ------------CCHHHHHHHHHT---TCCEEEEESS-BTTTTB-CCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSC
T ss_pred ------------CCHHHHHHHhcc---CCCEEEEeCC-CCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCC
Confidence 114788888863 2344555555 556664 4577889999999999999999999999887766
Q ss_pred ccc-cc---ccCCCCCCeeeecccCCCcccceeEEEe-ChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh
Q 013204 255 TMF-GC---DKYSIKPDLVSFAKALSSAYMPIGAILV-SPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK 329 (447)
Q Consensus 255 ~~~-~~---~~~~~~~d~v~~sK~l~gg~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~ 329 (447)
... .+ ...+...++.++||.++.+++++|+++. ++++++.+.. .....+++.++++++++.++++..+
T Consensus 201 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~~~~l~~~~ 273 (377)
T 3fdb_A 201 HTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQ-------LSPVIKDGASTLGLIAAEAAYRYGT 273 (377)
T ss_dssp CCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEEEECCSHHHHHHHHH-------SCHHHHCCCCHHHHHHHHHHHHHCH
T ss_pred CCcccHHHccCCCcEEEEEeChHhccCcchhheEEEeCCHHHHHHHHH-------HHHhhcCCCCHHHHHHHHHHHhccH
Confidence 221 11 1112224455789999754489998776 7888888763 2233467788999999888887532
Q ss_pred h--hcHHHHHHHHHHHHHHhHhh-ccCCCceeeEeeeeeE-EEEEeecCCCCCCCCCCCcchHHHHHHHHHHc-CceEEe
Q 013204 330 E--RNIVEQVNKIAPKFQDGVKA-FSDSPIIGEIRGTGLI-LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH-GMLVRV 404 (447)
Q Consensus 330 ~--~~~~~~~~~~~~~l~~~L~~-l~~~~~~~~~~~~g~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~ 404 (447)
+ ++..++++++.+++.+.|++ ++. +....+.+.+ ..+.+....... .+.+.|+++ ||++.+
T Consensus 274 ~~~~~~~~~~~~~~~~l~~~L~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~gi~v~~ 339 (377)
T 3fdb_A 274 DFLNQEVAYLKNNHDFLLHEIPKRIPG---AKITPMQATYLMWIDFRDTTIEG-----------SPSEFFIEKAKVAMND 339 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTT---CEECCCSBCSEEEEECTTSCCCS-----------CHHHHHHHHHCEECEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCC---ceEecCCeeEEEEEECcccCCCH-----------HHHHHHHHhCCEEecC
Confidence 1 44566777777888888876 332 2223344443 356665422111 256666665 999987
Q ss_pred e-------CCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 405 S-------GDNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 405 ~-------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+ .+.+|++++ .++++|++++++|++++++
T Consensus 340 g~~~~~~~~~~~Ris~~--~~~e~i~~~l~~l~~~l~~ 375 (377)
T 3fdb_A 340 GAWFGEDGTGFCRLNFA--TSREVLEEAIDRMAKAVSH 375 (377)
T ss_dssp GGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHHHTT
T ss_pred ChhccCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHhh
Confidence 5 267999965 5999999999999998764
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.3e-30 Score=248.47 Aligned_cols=344 Identities=17% Similarity=0.235 Sum_probs=244.2
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCC-CCCHHHHHHHHHHHhcCCcc---cccCcCCChHHHHHHHHHHHh
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALG-GSEPRLVAAATAQLNTLPFY---HSFWNRTTKPSLDLAKELLEM 89 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~ 89 (447)
.+|.++.+++|++++ .+|++|+||+++. ++| +.+|++.+++.+++.+.... +....+..+...++++.++++
T Consensus 21 ~~~~~~~~~~g~~~~-~~g~~~id~~~~~---~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~ 96 (384)
T 1bs0_A 21 RRRYPVAQGAGRWLV-ADDRQYLNFSSND---YLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEW 96 (384)
T ss_dssp CCCCCCSBCSSSEEE-ETTEEEEECSCCC---TTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHH
T ss_pred cccccccCCCCceEE-ECCceEEEeeccC---ccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHH
Confidence 467888999999999 8999999998873 377 58999999999998763211 111123567888999999999
Q ss_pred cCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCC
Q 013204 90 FTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDC 169 (447)
Q Consensus 90 ~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (447)
+. .++.+++++|++|+..+++.+. .+++.| +++..+|+.....+...|... ..++.
T Consensus 97 ~g---~~~~i~~~sGt~a~~~~~~~~~--------~~gd~v-~~~~~~~~~~~~~~~~~g~~~------------~~~~~ 152 (384)
T 1bs0_A 97 LG---YSRALLFISGFAANQAVIAAMM--------AKEDRI-AADRLSHASLLEAASLSPSQL------------RRFAH 152 (384)
T ss_dssp HT---CSEEEEESCHHHHHHHHHHHHC--------CTTCEE-EEETTCCHHHHHHHHTSSSEE------------EEECT
T ss_pred hC---CCcEEEeCCcHHHHHHHHHHhC--------CCCcEE-EEcccccHHHHHHHHHcCCCE------------EEeCC
Confidence 73 3478888999999999998762 223445 445566676655554444321 11111
Q ss_pred CCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-
Q 013204 170 PHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC- 248 (447)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~- 248 (447)
. +.++|++.+....+ .+++|+++++++.+|.+.+ +++|.++|++||+++|+||+|+
T Consensus 153 ~------------------d~~~l~~~l~~~~~-~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~ 209 (384)
T 1bs0_A 153 N------------------DVTHLARLLASPCP-GQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGT 209 (384)
T ss_dssp T------------------CHHHHHHHHHSCCS-SCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTT
T ss_pred C------------------CHHHHHHHHHhcCC-CCeEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCccc
Confidence 1 13778888764322 3678899988888888876 8999999999999999999996
Q ss_pred CC-CccccccccccCCCCCCee--eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHH
Q 013204 249 AF-GRLGTMFGCDKYSIKPDLV--SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEAL 325 (447)
Q Consensus 249 g~-g~~g~~~~~~~~~~~~d~v--~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l 325 (447)
|+ ++.|..+ ...++..+|++ ++||.++. +.|++++++++++.+.... .....+.+.++++++++.+++
T Consensus 210 ~~~~~~~~~~-~~~~~~~~di~~~s~sK~~~~---~GG~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~al 280 (384)
T 1bs0_A 210 GVIGEQGRGS-CWLQKVKPELLVVTFGKGFGV---SGAAVLCSSTVADYLLQFA-----RHLIYSTSMPPAQAQALRASL 280 (384)
T ss_dssp TTSSGGGCCH-HHHTTCCCSEEEEESSSTTSS---CCEEEEECHHHHHHHHHHC-----HHHHSSBCCCHHHHHHHHHHH
T ss_pred ceecCCCCch-HHhcCCCCcEEEeeccchhhc---cCcEEEeCHHHHHHHHHhc-----hhhhcCCCCCHHHHHHHHHHH
Confidence 32 3344332 24455668988 78999873 3489999999988876421 011123467899999999999
Q ss_pred HHHhh---hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceE
Q 013204 326 KIYKE---RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLV 402 (447)
Q Consensus 326 ~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~ 402 (447)
+.+.+ ++..++++++.+++.+.|+++ ... ...+.|.++.+.+.... ....+.+.|+++||.+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~---~~~~~~~~~~~~~~~~~-----------~~~~l~~~l~~~gi~v 345 (384)
T 1bs0_A 281 AVIRSDEGDARREKLAALITRFRAGVQDL-PFT---LADSCSAIQPLIVGDNS-----------RALQLAEKLRQQGCWV 345 (384)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCE---ECSCCSSBCCEEEESHH-----------HHHHHHHHHHHTTEEC
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHhc-CCc---ccCCCCCEEEEEeCCHH-----------HHHHHHHHHHHCCcEE
Confidence 87752 456778888888888888775 211 11244556566664211 2456888999999999
Q ss_pred EeeC--------CEEEEecCCCCCHHHHHHHHHHHHHH
Q 013204 403 RVSG--------DNIMMSPPFIMSPEEVDELISKYGKA 432 (447)
Q Consensus 403 ~~~g--------~~iR~~~~~~~t~e~i~~~~~~l~~~ 432 (447)
.++. +.+|++++..++++++++++++|+++
T Consensus 346 ~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 346 TAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp CEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred EeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 8752 46999999888999999999999864
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.4e-29 Score=242.29 Aligned_cols=356 Identities=9% Similarity=-0.004 Sum_probs=221.1
Q ss_pred EEEEecCcEEEeCCCC-----EEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCCh-HHHHHHHHHHHhcC
Q 013204 18 VIEKSEGSYVYDVNGK-----KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTK-PSLDLAKELLEMFT 91 (447)
Q Consensus 18 ~~~~~~g~~~~d~dg~-----~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~ 91 (447)
+-.++.|+++||.+|+ +++||.++. ..+| .+|++.+++.+++......+.. ...+ ....+++.+.+.+.
T Consensus 8 ~~~~~~~~~~~d~~~~~~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~--~~~~~lr~~la~~l~~~~g 82 (390)
T 1d2f_A 8 VDRHGTWCTQWDYVADRFGTADLLPFTISD--MDFA-TAPCIIEALNQRLMHGVFGYSR--WKNDEFLAAIAHWFSTQHY 82 (390)
T ss_dssp ----------------------CEECCSSS--CSSC-CCHHHHHHHHHHHTTCCCCCCC--SCCHHHHHHHHHHHHHHSC
T ss_pred ccccCCCccchhhhccccCCCCeeEeeecC--CCCC-CCHHHHHHHHHHHhCCCCCCCC--CChHHHHHHHHHHHHHhcC
Confidence 4467999999999998 789997664 4577 7899999999998653222221 1334 45555555554432
Q ss_pred -cCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC
Q 013204 92 -ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP 170 (447)
Q Consensus 92 -~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (447)
..+.+++++++||++|++.+++.+. .++++|++.+++||+........+. .. ..++..
T Consensus 83 ~~~~~~~v~~t~g~~~al~~~~~~l~--------~~gd~vl~~~p~y~~~~~~~~~~g~-~~------------~~v~~~ 141 (390)
T 1d2f_A 83 TAIDSQTVVYGPSVIYMVSELIRQWS--------ETGEGVVIHTPAYDAFYKAIEGNQR-TV------------MPVALE 141 (390)
T ss_dssp CCCCGGGEEEESCHHHHHHHHHHHSS--------CTTCEEEEEESCCHHHHHHHHHTTC-EE------------EEEECE
T ss_pred CCCCHHHEEEcCCHHHHHHHHHHHhc--------CCCCEEEEcCCCcHHHHHHHHHCCC-EE------------EEeecc
Confidence 1456789999999999999999763 2347899999999998765543222 11 111110
Q ss_pred CcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCC
Q 013204 171 HYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250 (447)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~ 250 (447)
.. ..+ + ..++++|++.+.. .++++|++...++.+|.+ .+.+++++|.++|++||+++|+||+|+++
T Consensus 142 ~~------~~~---~-~~d~~~l~~~l~~---~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~ 207 (390)
T 1d2f_A 142 KQ------ADG---W-FCDMGKLEAVLAK---PECKIMLLCSPQNPTGKV-WTCDELEIMADLCERHGVRVISDEIHMDM 207 (390)
T ss_dssp EC------SSS---E-ECCHHHHHHHHTS---TTEEEEEEESSCTTTCCC-CCTTHHHHHHHHHHHTTCEEEEECTTTTC
T ss_pred cC------CCc---c-ccCHHHHHHHhcc---CCCeEEEEeCCCCCCCcC-cCHHHHHHHHHHHHHcCCEEEEEcccccc
Confidence 00 000 0 0013778877752 245666654456666654 56789999999999999999999999988
Q ss_pred CccccccccccCCCCC---C-eeeecccCCCcccceeEEEeC-hhHHHHhhhccCCCCccCc-CCCC-CCcHHHHHHHHH
Q 013204 251 GRLGTMFGCDKYSIKP---D-LVSFAKALSSAYMPIGAILVS-PEVSEVIHSQSNTLGSFSH-GFTY-SGHPVSCAVAIE 323 (447)
Q Consensus 251 g~~g~~~~~~~~~~~~---d-~v~~sK~l~gg~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~-~~t~-~~~~~~~~aa~a 323 (447)
.+.|..+. ....+.+ | +.++||.++.+++++|+++++ +++++.+... .. ..++ +.++++++++.+
T Consensus 208 ~~~g~~~~-~~~~~~~~~~d~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~a~~~ 279 (390)
T 1d2f_A 208 VWGEQPHI-PWSNVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSA-------LKGRDGLSSPSVLALTAHIA 279 (390)
T ss_dssp BCSSSCCC-CGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHH-------HHTTSCCCSCCHHHHHHHHH
T ss_pred ccCCCCCc-CHHHcchhhHhhccCccHhhcccChhheEEEECCHHHHHHHHHH-------HhhhcccCCCCHHHHHHHHH
Confidence 76664321 1112222 3 778999997333899999985 7888777532 22 2354 678889888888
Q ss_pred HHHHHh--hhcHHHHHHHHHHHHHHhHhh-ccCCCceeeEeeeee-EEEEEeecCCCCCCCCCCCcchHHHHHHHHH-Hc
Q 013204 324 ALKIYK--ERNIVEQVNKIAPKFQDGVKA-FSDSPIIGEIRGTGL-ILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KH 398 (447)
Q Consensus 324 ~l~~~~--~~~~~~~~~~~~~~l~~~L~~-l~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~ 398 (447)
+++... -++..++++++.+++.+.|++ ++... .+.+.|. ++.+.+..... ....+.+.|+ ++
T Consensus 280 ~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~---~~~~~~~~~~~~~~~~~~~----------~~~~l~~~l~~~~ 346 (390)
T 1d2f_A 280 AYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELN---WQIPQSTYLAWLDLRPLNI----------DDNALQKALIEQE 346 (390)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC---CCCCSBCSEEEEECGGGCC----------CHHHHHHHHHHTT
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCE---EecCCccEEEEEEccccCC----------CHHHHHHHHHHHc
Confidence 887421 133456667777777777776 43322 2334444 44567654210 1446788888 68
Q ss_pred CceEEee-------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 399 GMLVRVS-------GDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 399 Gi~~~~~-------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
||++.++ .+.+|++++. ++++|++++++|+++++++
T Consensus 347 gi~v~~g~~f~~~~~~~~Ris~~~--~~~~l~~~l~~l~~~l~~~ 389 (390)
T 1d2f_A 347 KVAIMPGYTYGEEGRGFVRLNAGC--PRSKLEKGVAGLINAIRAV 389 (390)
T ss_dssp CEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHHHHHH
T ss_pred CEEeeCccccCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHhh
Confidence 9999875 2579999664 6899999999999988764
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=245.66 Aligned_cols=353 Identities=10% Similarity=0.032 Sum_probs=238.6
Q ss_pred eEEEEecCcEEEeCCCCEE-----EecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC
Q 013204 17 LVIEKSEGSYVYDVNGKKY-----LDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT 91 (447)
Q Consensus 17 ~~~~~~~g~~~~d~dg~~~-----lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (447)
++..++.|+++||.+|++| +||..+. +..+.+|++.+++.+++.+....+. ....+...++++.+.+.+.
T Consensus 11 ~~~~~~~g~~~~d~~~~~~~~~~~i~l~~~~---~~~~~~~~v~~a~~~~~~~~~~~y~--~~~~~~~~~l~~~l~~~~g 85 (391)
T 4dq6_A 11 IVDRSNNFSSKWSEMEKKYGTNDLLPMWVAD---MDFKAAPCIIDSLKNRLEQEIYGYT--TRPDSYNESIVNWLYRRHN 85 (391)
T ss_dssp CCCCTTTTBHHHHCHHHHHSCSCSEECCSSS---CSSCCCHHHHHHHHHHHTTCCCCCB--CCCHHHHHHHHHHHHHHHC
T ss_pred ccccccCCceeeeecccccCCCCceeccccC---CCCCCCHHHHHHHHHHHhCCCCCCC--CCCHHHHHHHHHHHHHHhC
Confidence 3455789999999987555 9998773 3334789999999999976433222 2345667778888887763
Q ss_pred -cCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC
Q 013204 92 -ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP 170 (447)
Q Consensus 92 -~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (447)
..+.+++++++||++|++.+++.+. .++++|++.+++||+........+.... .++..
T Consensus 86 ~~~~~~~v~~~~g~~~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~-------------~~~~~ 144 (391)
T 4dq6_A 86 WKIKSEWLIYSPGVIPAISLLINELT--------KANDKIMIQEPVYSPFNSVVKNNNRELI-------------ISPLQ 144 (391)
T ss_dssp CCCCGGGEEEESCHHHHHHHHHHHHS--------CTTCEEEECSSCCTHHHHHHHHTTCEEE-------------ECCCE
T ss_pred CCCcHHHeEEcCChHHHHHHHHHHhC--------CCCCEEEEcCCCCHHHHHHHHHcCCeEE-------------eeeee
Confidence 1457799999999999999999773 3357899999999998765544322111 11111
Q ss_pred --CcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc
Q 013204 171 --HYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC 248 (447)
Q Consensus 171 --~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~ 248 (447)
....+. . +++++++.+. + +++|+++..++.+|. .++.+.+++|+++|++||+++|+||+|+
T Consensus 145 ~~~~~~~~---~--------d~~~l~~~l~---~--~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~ 207 (391)
T 4dq6_A 145 KLENGNYI---M--------DYEDIENKIK---D--VKLFILCNPHNPVGR-VWTKDELKKLGDICLKHNVKIISDEIHS 207 (391)
T ss_dssp ECTTSCEE---C--------CHHHHHHHCT---T--EEEEEEESSBTTTTB-CCCHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred ecCCCceE---e--------eHHHHHHHhh---c--CCEEEEECCCCCCCc-CcCHHHHHHHHHHHHHcCCEEEeecccc
Confidence 000000 0 1377777665 2 566666666776775 4567789999999999999999999999
Q ss_pred CCCcccccc-ccccCC-----CCCCeeeecccCCCcccceeEEEeCh-hHHHHhhhccCCCCccCcCCCCCCcHHHHHHH
Q 013204 249 AFGRLGTMF-GCDKYS-----IKPDLVSFAKALSSAYMPIGAILVSP-EVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVA 321 (447)
Q Consensus 249 g~g~~g~~~-~~~~~~-----~~~d~v~~sK~l~gg~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa 321 (447)
++.+.|... .+..+. ....+.++||.++.+++++|++++++ ++++.+... .....+++.++++++++
T Consensus 208 ~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~ 281 (391)
T 4dq6_A 208 DIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDA------FTRIDIKRNNCFSLVAT 281 (391)
T ss_dssp TCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHH------HHHTTCCCCCHHHHHHH
T ss_pred ccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHH------HHhhcCCCCCHHHHHHH
Confidence 887766432 122211 11224468899974448999999875 888877632 12234567889999988
Q ss_pred HHHHHHHh--hhcHHHHHHHHHHHHHHhHhh-ccCCCceeeEeeeeeEE-EEEeecCCCCCCCCCCCcchHHHHHHHHHH
Q 013204 322 IEALKIYK--ERNIVEQVNKIAPKFQDGVKA-FSDSPIIGEIRGTGLIL-GTEFADNKSPNEPFPPEWGIGAYFGAQCEK 397 (447)
Q Consensus 322 ~a~l~~~~--~~~~~~~~~~~~~~l~~~L~~-l~~~~~~~~~~~~g~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 397 (447)
.++++..+ -++..++++++.+++++.|++ ++. +....+.+.++ .+.+..... ....+.+.|++
T Consensus 282 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~ 348 (391)
T 4dq6_A 282 EASYNNGESWLESFLEYLESNIDFAIKYINENMPK---LKVRKPEGTYLLWVDFSALGL----------SDEELESILVQ 348 (391)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTT---SEECCCSBSSEEEEECGGGCC----------CHHHHHHHHHH
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhCCC---CEecCCCccEEEEEEhhhcCC----------CHHHHHHHHHH
Confidence 88887522 133456666777777777766 332 23334444443 466654211 14568889999
Q ss_pred c-CceEEee-------CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 398 H-GMLVRVS-------GDNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 398 ~-Gi~~~~~-------g~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
+ ||++.++ .+.+|++++ +++++|++++++|++++
T Consensus 349 ~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 349 KGKVALNQGNSFGIGGSGYQRINLA--CPRSMLEEALIRIKNAI 390 (391)
T ss_dssp TTCEECEEGGGGCTTCTTEEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred hCCEEeeCchhhCCCCCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence 8 9999874 267999965 79999999999999876
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-28 Score=234.29 Aligned_cols=338 Identities=13% Similarity=0.106 Sum_probs=219.8
Q ss_pred CeEEEEecCcEEEe-CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCC
Q 013204 16 PLVIEKSEGSYVYD-VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASK 94 (447)
Q Consensus 16 ~~~~~~~~g~~~~d-~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 94 (447)
++++.++.+.+.++ .+|++++||.++. ++++ .+|++.+++.+++++...+ +.....++++++++++ +.+
T Consensus 8 ~~~~~~g~~~~~~~~~~~~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~y------~~~~~~~l~~~la~~~-~~~ 77 (361)
T 3ftb_A 8 GDLMIHGGDIYTEGVFKGRELLDYSSNI--NPLG-IPKSFLNNIDEGIKNLGVY------PDVNYRRLNKSIENYL-KLK 77 (361)
T ss_dssp --------------------CEETTCCC--CTTC-SCHHHHTTHHHHHHGGGSC------CCTTCHHHHHHHHHHH-TCC
T ss_pred CccccCCCCHHHHhhcCCCCEEEecCCC--CCCC-CCHHHHHHHHHHHHHhcCC------CCccHHHHHHHHHHHh-CCC
Confidence 34555555544444 4899999998885 4566 6899999999998763222 3344578888888887 346
Q ss_pred CCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCccc
Q 013204 95 MAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWR 174 (447)
Q Consensus 95 ~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (447)
.+++++++||++|++.+++.+ ++|++.+++||+........+.... .++....
T Consensus 78 ~~~i~~~~g~t~al~~~~~~~------------d~vi~~~~~~~~~~~~~~~~g~~~~-------------~~~~~~~-- 130 (361)
T 3ftb_A 78 DIGIVLGNGASEIIELSISLF------------EKILIIVPSYAEYEINAKKHGVSVV-------------FSYLDEN-- 130 (361)
T ss_dssp SCEEEEESSHHHHHHHHHTTC------------SEEEEEESCCTHHHHHHHHTTCEEE-------------EEECCTT--
T ss_pred cceEEEcCCHHHHHHHHHHHc------------CcEEEecCChHHHHHHHHHcCCeEE-------------EeecCcc--
Confidence 789999999999999998854 5899999999998665544322111 1111110
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccc
Q 013204 175 YAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLG 254 (447)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g 254 (447)
...+ ++++++.+.. ..++++++| ++.+| ...+.+.+++|+++|++||+++|+||+|+++.+.+
T Consensus 131 -----~~~~------~~~l~~~l~~----~~~v~i~~p-~nptG-~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~ 193 (361)
T 3ftb_A 131 -----MCID------YEDIISKIDD----VDSVIIGNP-NNPNG-GLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDP 193 (361)
T ss_dssp -----SCCC------HHHHHHHTTT----CSEEEEETT-BTTTT-BCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCT
T ss_pred -----cCCC------HHHHHHhccC----CCEEEEeCC-CCCCC-CCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCc
Confidence 0000 2667766652 333444555 55555 45577889999999999999999999999886642
Q ss_pred cccccccCCCCCCee---eecccCCCcccceeEEE-eChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-
Q 013204 255 TMFGCDKYSIKPDLV---SFAKALSSAYMPIGAIL-VSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK- 329 (447)
Q Consensus 255 ~~~~~~~~~~~~d~v---~~sK~l~gg~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~- 329 (447)
........+..++++ ++||.++.+++++|+++ .++++++.+... ..+++.++++++++.++++..+
T Consensus 194 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~ 264 (361)
T 3ftb_A 194 SSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAK---------QNPWNINCFAEMAAINCLKDTNY 264 (361)
T ss_dssp TSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHHTT---------SCTTCSCHHHHHHHHHTSSCHHH
T ss_pred ccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHHhh---------CCCCCCCHHHHHHHHHHhcCHHH
Confidence 122223333334433 67899984448999998 899999888631 1356788999998888886311
Q ss_pred hhcHHHHHHHHHHHHHHhHhhccCCCcee-eEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee---
Q 013204 330 ERNIVEQVNKIAPKFQDGVKAFSDSPIIG-EIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS--- 405 (447)
Q Consensus 330 ~~~~~~~~~~~~~~l~~~L~~l~~~~~~~-~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--- 405 (447)
-++..++++++.+++++.|+++ +.+. ...+.|.++.+.+... ....+.+.|.++||.+.++
T Consensus 265 ~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~l~~~gi~v~~g~~~ 329 (361)
T 3ftb_A 265 IEESLLWIKKERKRFIEELNKI---GFIKRVFSPHANFVLCRLENI------------SGEKLYDSLLKEDIVIRRCCNF 329 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS---SSEEEEECCSSSEEEEEESSS------------CHHHHHHHHHTTTEECEECTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhC---CCCceecCCCCeEEEEEcCCC------------CHHHHHHHHHHCCeEEeeCccC
Confidence 1234455666666777766654 4444 5566788877777541 1456889999999999875
Q ss_pred ----CCEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 406 ----GDNIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 406 ----g~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
.+.+|++++ ++++++++++.|++..+
T Consensus 330 ~~~~~~~iRis~~---~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 330 IGLDDSFVRFAIK---DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp TTCCTTEEEEECC---CHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEcC---CHHHHHHHHHHHHHHHh
Confidence 257999954 88899999988887654
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-29 Score=243.21 Aligned_cols=359 Identities=13% Similarity=0.048 Sum_probs=232.7
Q ss_pred EEEEecCcEEEeCCCC-------EEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhc
Q 013204 18 VIEKSEGSYVYDVNGK-------KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMF 90 (447)
Q Consensus 18 ~~~~~~g~~~~d~dg~-------~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 90 (447)
+..++.|+++||.||+ +++||.++. ..++ .+|.+.+++.+++.+....+.. ...+....+++.+.+.+
T Consensus 9 ~~~~~~g~~~~d~~g~~~g~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~--~~~~l~~~la~~l~~~~ 83 (399)
T 1c7n_A 9 ISRKNLGSLKWDLMYSQNPEVGNEVVPLSVAD--MEFK-NPPELIEGLKKYLDETVLGYTG--PTEEYKKTVKKWMKDRH 83 (399)
T ss_dssp CCCTTTTBHHHHHHHHHCTTCCTTCCCCCSSS--CSSC-CCHHHHHHHHHHHHHCCCSSBC--CCHHHHHHHHHHHHHHH
T ss_pred ccccCCCccccccchhhccccCCCceeeeecC--CCCC-CCHHHHHHHHHHHhcCCCCCCC--CcHHHHHHHHHHHHHHh
Confidence 3457999999998884 789997764 4566 6899999999998653222221 12233333444443333
Q ss_pred C-cCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCC
Q 013204 91 T-ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDC 169 (447)
Q Consensus 91 ~-~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (447)
. +.+.+++++++||++|++.+++.+. .++++|++.+++||+........ |... ..++.
T Consensus 84 g~~~~~~~v~~t~g~~~a~~~~~~~l~--------~~gd~vl~~~p~~~~~~~~~~~~-g~~~------------~~~~~ 142 (399)
T 1c7n_A 84 QWDIQTDWIINTAGVVPAVFNAVREFT--------KPGDGVIIITPVYYPFFMAIKNQ-ERKI------------IECEL 142 (399)
T ss_dssp CCCCCGGGEEEESSHHHHHHHHHHHHC--------CTTCEEEECSSCCTHHHHHHHTT-TCEE------------EECCC
T ss_pred CCCCChhhEEEcCCHHHHHHHHHHHhc--------CCCCEEEEcCCCcHhHHHHHHHc-CCEE------------Eeccc
Confidence 2 1356789999999999999999763 23478999999999987655432 2211 11111
Q ss_pred CCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcC
Q 013204 170 PHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA 249 (447)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g 249 (447)
... .+ . + ..++++|++.+.. .++++|+++..++.+|. .++.+++++|+++|++||+++|+||+|++
T Consensus 143 ~~~-----~g-~---~-~~d~~~l~~~l~~---~~~~~v~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~ 208 (399)
T 1c7n_A 143 LEK-----DG-Y---Y-TIDFQKLEKLSKD---KNNKALLFCSPHNPVGR-VWKKDELQKIKDIVLKSDLMLWSDEIHFD 208 (399)
T ss_dssp EEE-----TT-E---E-ECCHHHHHHHHTC---TTEEEEEEESSBTTTTB-CCCHHHHHHHHHHHHHSSCEEEEECTTTT
T ss_pred ccC-----CC-C---E-EEcHHHHHHHhcc---CCCcEEEEcCCCCCCCc-CcCHHHHHHHHHHHHHcCCEEEEEccccc
Confidence 000 00 0 0 0013778777752 24566666666666665 46788999999999999999999999998
Q ss_pred CCccccc-cccccC-----CCCCCeeeecccCCCcccceeEEEeC-hhHHHHhhhccCCCCccCcCCCC-CCcHHHHHHH
Q 013204 250 FGRLGTM-FGCDKY-----SIKPDLVSFAKALSSAYMPIGAILVS-PEVSEVIHSQSNTLGSFSHGFTY-SGHPVSCAVA 321 (447)
Q Consensus 250 ~g~~g~~-~~~~~~-----~~~~d~v~~sK~l~gg~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~t~-~~~~~~~~aa 321 (447)
+++.|.. .....+ +....+.++||.++.+++++|+++++ +++++.+... ....++ +.++++++++
T Consensus 209 ~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~a~ 281 (399)
T 1c7n_A 209 LIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKS-------RDATSGMPFTTLGYKAC 281 (399)
T ss_dssp CBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHH-------HHHTTCCCCCHHHHHHH
T ss_pred cccCCCCcccHHHcCccccCcEEEEEeChhhccccchheEEEEECCHHHHHHHHHH-------HhhcccCCCCHHHHHHH
Confidence 8766642 222222 11123446899998333899999987 5688877532 122233 5688898888
Q ss_pred HHHHHHHh--hhcHHHHHHHHHHHHHHhHhh-ccCCCceeeEeeeeeE-EEEEeecCCCCCCCCCCCcchHHHHHHHHH-
Q 013204 322 IEALKIYK--ERNIVEQVNKIAPKFQDGVKA-FSDSPIIGEIRGTGLI-LGTEFADNKSPNEPFPPEWGIGAYFGAQCE- 396 (447)
Q Consensus 322 ~a~l~~~~--~~~~~~~~~~~~~~l~~~L~~-l~~~~~~~~~~~~g~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~- 396 (447)
.++++... -++..++++++.+++.+.|++ ++.. ..+.+.|.+ +.+.+..... ....+.+.|+
T Consensus 282 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~---~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~ 348 (399)
T 1c7n_A 282 EICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEI---KAPLIEGTYLQWIDFRALKM----------DHKAMEEFMIH 348 (399)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTS---BCCCCSBSSEEEEECGGGCC----------CHHHHHHHHHH
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHHHhhCCCC---eEecCCceEEEEEEcccCCC----------CHHHHHHHHHH
Confidence 88886421 133455666777777777766 4322 223344444 4567654210 1445788887
Q ss_pred HcCceEEee-------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 397 KHGMLVRVS-------GDNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 397 ~~Gi~~~~~-------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
++||++.++ .+.+|++++ .++++|++++++|+++++++++
T Consensus 349 ~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~l~~~l~~l~~~l~~~~~ 395 (399)
T 1c7n_A 349 KAQIFFDEGYIFGDGGIGFERINLA--APSSVIQESLERLNKALKDLKN 395 (399)
T ss_dssp TTCCCCEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHHHHHHC-
T ss_pred hCCEEEeCccccCCCCCCeEEEEec--cCHHHHHHHHHHHHHHHHHHHh
Confidence 689999875 257999966 4589999999999999987754
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-29 Score=246.70 Aligned_cols=364 Identities=13% Similarity=0.039 Sum_probs=229.4
Q ss_pred eEEEEecCcEEEeCCCC---EEEecCCccccccCCCCCHHHHHHHHHHHhcCCc-ccccCcCCChHHHHHHHHHHHhcCc
Q 013204 17 LVIEKSEGSYVYDVNGK---KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPF-YHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 17 ~~~~~~~g~~~~d~dg~---~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
.++.+++|.++.+.+++ +++||+++.. ++++ .+|++++++.+++.+... .+....+..+...++++++.+.+..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~id~~~g~~-~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~ 97 (407)
T 3nra_A 20 EVRQSAAGLEALIRGAPIEGRPVDFSHGDV-DAHE-PTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGA 97 (407)
T ss_dssp -------CCTTTCCSCCCCSCCEETTSCCT-TTSC-CCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhhhhHHHhhcCCCCCceeeecCcCC-CCCC-CcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCC
Confidence 45677788777655555 5999988743 3455 689999999999875321 1222234556777888888877632
Q ss_pred -CCC-CeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC
Q 013204 93 -SKM-AKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP 170 (447)
Q Consensus 93 -~~~-~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (447)
... +++++++||++|+..+++.+. .+++.|++.+++|++........+.... .++..
T Consensus 98 ~~~~~~~i~~~~g~~~a~~~~~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~-------------~~~~~ 156 (407)
T 3nra_A 98 PVDARDGLIITPGTQGALFLAVAATV--------ARGDKVAIVQPDYFANRKLVEFFEGEMV-------------PVQLD 156 (407)
T ss_dssp CCCTTTSEEEESHHHHHHHHHHHTTC--------CTTCEEEEEESCCTHHHHHHHHTTCEEE-------------EEEBC
T ss_pred CCCCCCcEEEeCCcHHHHHHHHHHhC--------CCCCEEEEcCCcccchHHHHHHcCCEEE-------------Eeecc
Confidence 112 689999999999999998653 3457899999999987655443322111 11110
Q ss_pred CcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCC
Q 013204 171 HYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250 (447)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~ 250 (447)
.. ........ .++++|++.+.. +..+++++.| ++.+|. .++.+.+++|+++|++||+++|+||+|+++
T Consensus 157 ~~-~~~~~~~~------~d~~~l~~~l~~---~~~~v~~~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~Dea~~~~ 224 (407)
T 3nra_A 157 YV-SADETRAG------LDLTGLEEAFKA---GARVFLFSNP-NNPAGV-VYSAEEIGQIAALAARYGATVIADQLYSRL 224 (407)
T ss_dssp CC-SSCCSSCC------BCHHHHHHHHHT---TCCEEEEESS-CTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTS
T ss_pred cc-cccCcCCC------cCHHHHHHHHhh---CCcEEEEcCC-CCCCCc-ccCHHHHHHHHHHHHHcCCEEEEEcccccc
Confidence 00 00000000 014778887763 2333445555 566664 557889999999999999999999999988
Q ss_pred Ccccccc-ccccCC-----CCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHH
Q 013204 251 GRLGTMF-GCDKYS-----IKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEA 324 (447)
Q Consensus 251 g~~g~~~-~~~~~~-----~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~ 324 (447)
++.|..+ .....+ ...++.++||.++.+++++|++++++++++.+... ....+++.++++++++.++
T Consensus 225 ~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~a~~~~ 297 (407)
T 3nra_A 225 RYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKL-------QAIVSLRAAGYSQAVLRGW 297 (407)
T ss_dssp BCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHHHH-------HHHHTSSSCHHHHGGGGGT
T ss_pred ccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHHHH-------HhhhccCCChHHHHHHHHH
Confidence 7666533 222222 12334578999984338999999999998887632 2334566678887777666
Q ss_pred HHHHh--hhcHHHHHHHHHHHHHHhHhhccCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHH-cCc
Q 013204 325 LKIYK--ERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEK-HGM 400 (447)
Q Consensus 325 l~~~~--~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi 400 (447)
++... -++..++.+++.+++++.|+++.. +....+. |.++.+.+..... ....+.+.|++ +||
T Consensus 298 l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~gi 364 (407)
T 3nra_A 298 FDEAPGWMEDRIARHQAIRDELLHVLRGCEG---VFARTPQAGSYLFPRLPKLAV----------APAEFVKILRLQAGV 364 (407)
T ss_dssp TCCCTTHHHHHHHHHHHHHHHHHHHHHTSTT---CBCCCCSBSSEECCBCCCBSS----------CHHHHHHHHHHHHCE
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHHhcCCC---ceeccCCeeEEEEEeCCCCCC----------CHHHHHHHHHHhCCE
Confidence 64210 123445666666777777766522 2222233 3555555543111 14567788865 599
Q ss_pred eEEee-------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 401 LVRVS-------GDNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 401 ~~~~~-------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
++.++ .+.+|++++ .++++|++++++|++++++++
T Consensus 365 ~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~~~~l~~~~~~~~ 406 (407)
T 3nra_A 365 VVTPGTEFSPHTADSVRLNFS--QDHEAAVAAARRIVTLVERYR 406 (407)
T ss_dssp ECEEGGGTCTTCTTBEEEECC--SCHHHHHHHHHHHHHHHHHHB
T ss_pred EEeCchhhCCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHHHhh
Confidence 99874 267999966 499999999999999987653
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-28 Score=237.90 Aligned_cols=358 Identities=12% Similarity=0.009 Sum_probs=225.8
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCC---cccccCcCCChHHHHHHHHHHHhcC-cCCCC-eEEEeCChhhH
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP---FYHSFWNRTTKPSLDLAKELLEMFT-ASKMA-KVFFTNSGSEA 107 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~-~v~~~~sGseA 107 (447)
..++||.++. ..+| .+|.+.+++.+++.+.. ..+....+..+....+++.+.+.+. +.+.+ ++++++||++|
T Consensus 37 ~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a 113 (429)
T 1yiz_A 37 YKPLNLGQGF--PDYH-APKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEA 113 (429)
T ss_dssp HCCEECCSSS--CSSC-CCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHH
T ss_pred CCEEEecCCC--CCCC-CCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHH
Confidence 3689998775 3567 68999999999987621 1111111223334445555444333 23567 89999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 108 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 108 ~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
++.+++.+. .++++|++.+++||+........ |.... .++..... ...+ .....+ .
T Consensus 114 ~~~~~~~~~--------~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~------------~~~~~~~~-~~~~-~~~~~~-~ 169 (429)
T 1yiz_A 114 LYATIQGHV--------DEGDEVIIIEPFFDCYEPMVKAA-GGIPR------------FIPLKPNK-TGGT-ISSADW-V 169 (429)
T ss_dssp HHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHT-TCEEE------------EEECBCCC-SSSS-EEGGGC-B
T ss_pred HHHHHHHhc--------CCCCEEEEcCCCchhHHHHHHHc-CCEEE------------EEeCCccc-cccc-ccccCc-c
Confidence 999999873 23478999999999986554432 22111 11110000 0000 000000 0
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-ccc----cC
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-GCD----KY 262 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~~~----~~ 262 (447)
.++++|++.+. +++++|++++.++.+|.+ ++.+++++|.++|++||+++|+||+|+++++.|..+ .+. ..
T Consensus 170 ~d~~~l~~~l~----~~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~ 244 (429)
T 1yiz_A 170 LDNNELEALFN----EKTKMIIINTPHNPLGKV-MDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMW 244 (429)
T ss_dssp CCHHHHHHHCC----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTG
T ss_pred cCHHHHHHHhc----cCceEEEECCCCCCCCcc-CCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCc
Confidence 01366776663 356777777777777755 568899999999999999999999999887766421 121 12
Q ss_pred CCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHH-----Hhhhc----H
Q 013204 263 SIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKI-----YKERN----I 333 (447)
Q Consensus 263 ~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~-----~~~~~----~ 333 (447)
+..+++.++||.++.+++|+|++++++++++.+.. ..+..+++.++++++++.++|+. ...++ .
T Consensus 245 ~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 317 (429)
T 1yiz_A 245 ERTITIGSAGKTFSLTGWKIGWAYGPEALLKNLQM-------VHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSI 317 (429)
T ss_dssp GGEEEEEEHHHHHTCGGGCCEEEESCHHHHHHHHH-------HHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHH
T ss_pred CceEEEecchhccCCCCcceEEEEeCHHHHHHHHH-------HHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHH
Confidence 33344567899998434899999999999888763 22345778899999888888886 32123 3
Q ss_pred HHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCC-CCCCCcchHHHHHHHHH-HcCceEEee------
Q 013204 334 VEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNE-PFPPEWGIGAYFGAQCE-KHGMLVRVS------ 405 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~l~-~~Gi~~~~~------ 405 (447)
.++++++.+++.+.|+++ ++.......|.++.+.+........ +..........+.++|+ ++||++.++
T Consensus 318 ~~~~~~~~~~l~~~L~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~ 394 (429)
T 1yiz_A 318 SGELMAKRDYMASFLAEV---GMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSE 394 (429)
T ss_dssp HHHHHHHHHHHHHHHHHH---TCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCG
T ss_pred HHHHHHHHHHHHHHHHhC---CCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCC
Confidence 455666667777777665 2221122236677777754210000 00000012445777776 789999864
Q ss_pred ------CCEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 406 ------GDNIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 406 ------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
.+.+|++++ .++++|++++++|+++++
T Consensus 395 ~~~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l~ 427 (429)
T 1yiz_A 395 PNKHLGEDFVRYCFF--KKDENLQKAAEILRKWKG 427 (429)
T ss_dssp GGGGGTTTEEEEECC--SCHHHHHHHHHHHHHHSC
T ss_pred cccCCCCCeEEEEec--CCHHHHHHHHHHHHHhcc
Confidence 357999976 599999999999988764
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-28 Score=238.46 Aligned_cols=352 Identities=12% Similarity=0.037 Sum_probs=230.7
Q ss_pred CCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc--
Q 013204 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA-- 92 (447)
Q Consensus 15 ~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-- 92 (447)
.|+....+.+..++|.+|+++|||.++. ..++ .+|.+.+++.++++....+ +...+..+...++++.+.+.+..
T Consensus 12 ~~~~~~~~~~~~~~~~~g~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y-~~~~g~~~lr~~la~~l~~~~g~~~ 87 (396)
T 3jtx_A 12 YPFARLHEAMQGISAPEGMEAVPLHIGE--PKHP-TPKVITDALTASLHELEKY-PLTAGLPELRQACANWLKRRYDGLT 87 (396)
T ss_dssp CHHHHHHHHTTTCCCCTTCCCEECSCCS--CCSC-CCHHHHHHHHHTGGGGGSC-CCTTCCHHHHHHHHHHHHHHTTTCC
T ss_pred ChHHHHHHHHHhhhhccCCCeEEeCCcC--CCCC-CCHHHHHHHHHHhhhccCC-CCCCCcHHHHHHHHHHHHHhcCCCC
Confidence 3444445667777889999999998886 4455 6899999999988643222 22223445566666666665432
Q ss_pred CCCC-eEEEeCChhhHHHHHHHHHHHHHHhcCCCC----cceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceec
Q 013204 93 SKMA-KVFFTNSGSEANDTQVKLVWYYNNALGRPN----KKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHT 167 (447)
Q Consensus 93 ~~~~-~v~~~~sGseA~~~Al~~~~~~~~~~~~~~----~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (447)
..++ ++++++||++|++.+++.+. +++ ++.|++.+++||+........+.... .+
T Consensus 88 ~~~~~~i~~t~g~~~al~~~~~~~~-------~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~-------------~v 147 (396)
T 3jtx_A 88 VDADNEILPVLGSREALFSFVQTVL-------NPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIH-------------FA 147 (396)
T ss_dssp CCTTTSEEEESSHHHHHHHHHHHHC-------CC---CCCCEEEEEESCCHHHHHHHHHTTCEEE-------------EE
T ss_pred CCCCCeEEEcCCcHHHHHHHHHHHh-------CCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEE-------------Ee
Confidence 3467 99999999999999999773 122 26899999999998765544332211 11
Q ss_pred CCCC-cccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehh
Q 013204 168 DCPH-YWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEV 246 (447)
Q Consensus 168 ~~~~-~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv 246 (447)
+.+. .+. .+ ++++++.+.. ++++|+++..++.+|. ..+.+.+++|.++|++||+++|+||+
T Consensus 148 ~~~~~g~~-----~d--------~~~l~~~~~~----~~~~v~l~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~ 209 (396)
T 3jtx_A 148 NCPAPSFN-----PD--------WRSISEEVWK----RTKLVFVCSPNNPSGS-VLDLDGWKEVFDLQDKYGFIIASDEC 209 (396)
T ss_dssp ECCTTTCC-----CC--------GGGSCHHHHH----TEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHCCEEEEECT
T ss_pred ecCCCCCc-----cC--------HHHHHHhhcc----CcEEEEEECCCCCCCC-cCCHHHHHHHHHHHHHcCCEEEEEcc
Confidence 1100 000 00 2556666653 3455555455566664 45677799999999999999999999
Q ss_pred hcCCCccc-cccccc--------cCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHH
Q 013204 247 ICAFGRLG-TMFGCD--------KYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVS 317 (447)
Q Consensus 247 ~~g~g~~g-~~~~~~--------~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 317 (447)
|+++.+.| .+.... ..+..+++.++||.++.+++++|++++++++++.+... ....+++.++++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 282 (396)
T 3jtx_A 210 YSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLY-------RTYHGSAMSIPV 282 (396)
T ss_dssp TTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHHHH-------HHHHTCCCCHHH
T ss_pred ccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcccceEEEEeCHHHHHHHHHH-------HhhcccCCCHHH
Confidence 99887766 332221 13333456679998776558999999999998888632 233467788999
Q ss_pred HHHHHHHHHHHh-hhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH
Q 013204 318 CAVAIEALKIYK-ERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE 396 (447)
Q Consensus 318 ~~aa~a~l~~~~-~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 396 (447)
++++.++++..+ -++..++++++.+.+.+.|+++ ..+. ....|.++.+.+.... ...+.+.|+
T Consensus 283 ~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~--~~~~~~~~~~~~~~~~------------~~~~~~~l~ 346 (396)
T 3jtx_A 283 QRASIAAWDDEQHVIDNRRLYQEKFERVIPILQQV--FDVK--LPDASFYIWLKVPDGD------------DLAFARNLW 346 (396)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTT--SCCC--CCSSSSEEEEECTTSC------------HHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc--CCcc--CCCeeEEEEEECCCCC------------HHHHHHHHH
Confidence 998888886311 1233455555556666666553 1111 1223556667765311 445777775
Q ss_pred -HcCceEEee-------------CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 397 -KHGMLVRVS-------------GDNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 397 -~~Gi~~~~~-------------g~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
++||++.++ .+.+|+++. .++++|++++++|++++
T Consensus 347 ~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 347 QKAAIQVLPGRFLARDTEQGNPGEGYVRIALV--ADVATCVKAAEDIVSLY 395 (396)
T ss_dssp HHHCEECEEGGGGCCCCTTCCTTTTEEEEECC--SCHHHHHHHHHHHHHHC
T ss_pred HHCCEEEeCChHhCCcccccCCCCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence 569999874 257999955 49999999999998764
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.9e-28 Score=232.62 Aligned_cols=327 Identities=13% Similarity=0.118 Sum_probs=218.8
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhHHH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEAND 109 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA~~ 109 (447)
+|++++||.++. ..+|+ +|.+.+++.+++++....+....+..+....+++.+...+. ..+++++++++||++|++
T Consensus 27 ~g~~~i~l~~~~--~~~~~-~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~ 103 (370)
T 2z61_A 27 EGKKVIHLEIGE--PDFNT-PKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLF 103 (370)
T ss_dssp TTCCCEECCCCS--CSSCC-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHH
T ss_pred cCCCEEEccCCC--CCCCC-CHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHH
Confidence 478899998775 35776 89999999999876322222111223333444444443321 145678999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (447)
.+++.+. .++++|++.+++||+........+... ..++ . +
T Consensus 104 ~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~-------------~~v~-~------------------d 143 (370)
T 2z61_A 104 FALSSII--------DDGDEVLIQNPCYPCYKNFIRFLGAKP-------------VFCD-F------------------T 143 (370)
T ss_dssp HHHHHHC--------CTTCEEEEESSCCTHHHHHHHHTTCEE-------------EEEC-S------------------S
T ss_pred HHHHHhc--------CCCCEEEEeCCCchhHHHHHHHcCCEE-------------EEeC-C------------------C
Confidence 9999773 234789999999999865544322111 1111 0 1
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccC-CC-CCC
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKY-SI-KPD 267 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~-~~-~~d 267 (447)
+++|++.+. +++++|++++.++.+|.+.+ ++ |.++|++||+++|+||+|+++.+.|.......+ +. ..|
T Consensus 144 ~~~l~~~l~----~~~~~v~~~~p~nptG~~~~----~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~ 214 (370)
T 2z61_A 144 VESLEEALS----DKTKAIIINSPSNPLGEVID----RE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKT 214 (370)
T ss_dssp HHHHHHHCC----SSEEEEEEESSCTTTCCCCC----HH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSE
T ss_pred HHHHHHhcc----cCceEEEEcCCCCCcCcccC----HH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcE
Confidence 377777664 25666777777777777766 44 999999999999999999987665543222222 12 123
Q ss_pred e--eeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHH-Hh--hhcHHHHHHHHHH
Q 013204 268 L--VSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKI-YK--ERNIVEQVNKIAP 342 (447)
Q Consensus 268 ~--v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~-~~--~~~~~~~~~~~~~ 342 (447)
+ .++||.++.+++++|++++++++++.+... ....+++.+++++.++.++|+. .. -++..++++++.+
T Consensus 215 i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 287 (370)
T 2z61_A 215 ILINGFSKLYAMTGWRIGYVISNDEIIEAILKL-------QQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRR 287 (370)
T ss_dssp EEEEESTTTTTCGGGCCEEEECCHHHHHHHHHH-------HHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhccCCccceEEEEEECHHHHHHHHHH-------HhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 3 368999974338999999999998887632 2233567788998888888864 22 1345677777888
Q ss_pred HHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEee-------CCEEEEecC
Q 013204 343 KFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVS-------GDNIMMSPP 414 (447)
Q Consensus 343 ~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------g~~iR~~~~ 414 (447)
++.+.|+++ +..+.. ...|.++.+.+.. . ...+.+.|+ ++||.+.++ .+.+|++++
T Consensus 288 ~l~~~L~~~-g~~~~~--~~~~~~~~~~~~~-~------------~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~ 351 (370)
T 2z61_A 288 LVLKYVKDF-GWEVNN--PIGAYYVFPNIGE-D------------GREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA 351 (370)
T ss_dssp HHHHHHHHT-TCBCCC--CCBTTEECCBCSS-C------------HHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC
T ss_pred HHHHHHHHc-CCeecC--CCcceEEEEecCC-C------------HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe
Confidence 888888775 322211 1124444444432 1 345788887 789999875 357999976
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 013204 415 FIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 415 ~~~t~e~i~~~~~~l~~~l~ 434 (447)
+++++|++++++|+++++
T Consensus 352 --~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 352 --NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp --SCHHHHHHHHHHHHHHHC
T ss_pred --CCHHHHHHHHHHHHHHHh
Confidence 799999999999998764
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-27 Score=232.12 Aligned_cols=345 Identities=17% Similarity=0.128 Sum_probs=230.6
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhc----C-cCCCCeEEEeCChh
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMF----T-ASKMAKVFFTNSGS 105 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~-~~~~~~v~~~~sGs 105 (447)
.|+.++||.++... ..|+.+|.+.+++.+++++.... .. ........++.+.+++++ . +.+.+++++++||+
T Consensus 32 ~g~~~idl~~g~~~-~~~~~~~~v~~a~~~~~~~~~~~-~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t 108 (407)
T 2zc0_A 32 KGVKLISLAAGDPD-PELIPRAVLGEIAKEVLEKEPKS-VM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGT 108 (407)
T ss_dssp SSCCCEECCSCCCC-TTTSCHHHHHHHHHHHHHHCGGG-GS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHH
T ss_pred CCCceEeCCCCCCC-chhCCHHHHHHHHHHHHhhcccc-cc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHH
Confidence 37789999887643 45778899999999998763210 00 111122344555555544 2 13567999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHH
Q 013204 106 EANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEY 185 (447)
Q Consensus 106 eA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (447)
+|++.+++.++ ..+++|++.+++||+....... .|... ..++.... +
T Consensus 109 ~a~~~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~-~g~~~------------~~v~~~~~------~------ 155 (407)
T 2zc0_A 109 GALDLLGRVLI--------DPGDVVITENPSYINTLLAFEQ-LGAKI------------EGVPVDND------G------ 155 (407)
T ss_dssp HHHHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHT-TTCEE------------EEEEEETT------E------
T ss_pred HHHHHHHHHhc--------CCCCEEEEeCCChHHHHHHHHH-cCCEE------------EEcccCCC------C------
Confidence 99999999874 2347899999999997654433 22211 11111000 0
Q ss_pred HHHHHHHHHHHHHhh--CCCcEEEE-EEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccc-ccccc
Q 013204 186 STRLANNLEDLILKE--GPETIAAF-IAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTM-FGCDK 261 (447)
Q Consensus 186 ~~~~~~~le~~l~~~--~~~~~a~v-i~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~-~~~~~ 261 (447)
.++++|++.+... ...++++| +++..++.+|.+ .+.+++++|.++|++||+++|+||+|+++.+.|.. .....
T Consensus 156 --~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~ 232 (407)
T 2zc0_A 156 --MRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVT-MSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKA 232 (407)
T ss_dssp --ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGG
T ss_pred --CCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhh
Confidence 1147777777521 11246666 456667777754 56889999999999999999999999988665542 22222
Q ss_pred CCCC---CCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHH--h---hhcH
Q 013204 262 YSIK---PDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIY--K---ERNI 333 (447)
Q Consensus 262 ~~~~---~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~--~---~~~~ 333 (447)
++.. .++.++||.++.| +++|++++++++++.+... ....+++.+++++.++.++++.. + -++.
T Consensus 233 ~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 304 (407)
T 2zc0_A 233 LDNEGRVIVAGTLSKVLGTG-FRIGWIIAEGEILKKVLMQ-------KQPIDFCAPAISQYIALEYLKRGYFEKYHLEGA 304 (407)
T ss_dssp GCSSCCEEEEEESTTTTCTT-SCCEEEECCHHHHHHHHHH-------HTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTH
T ss_pred cCCCCCEEEEcccccccCCC-cceEEEecCHHHHHHHHHH-------HHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHH
Confidence 2222 2455789999955 8999999999998887632 23345667888888888888743 1 2345
Q ss_pred HHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc-CceEEee------
Q 013204 334 VEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH-GMLVRVS------ 405 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~------ 405 (447)
.++++++.+++.+.|++. ....+. .+..|.++.+.+.... ....+.+.|+++ ||++.++
T Consensus 305 ~~~~~~~~~~l~~~L~~~~~~~~~~--~~~~~~~~~~~~~~~~-----------~~~~l~~~l~~~~gi~v~~g~~~~~~ 371 (407)
T 2zc0_A 305 LLGYKEKRDIMLKALENHLPNAEFT--KPIAGMFVMFFLPEGA-----------DGISFANELMEREGVVVVPGKPFYTD 371 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCBC--CCSBSSEEEEECSTTC-----------CHHHHHHHHHHHTCEECBCSGGGCSS
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEe--cCCCcEEEEEEcCCCC-----------CHHHHHHHHHHhCCeEEECchhccCC
Confidence 667777888888888763 332221 1234567777765311 145688889888 9998864
Q ss_pred ---CCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 406 ---GDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 406 ---g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.+.+|++++.. ++++|++++++|+++++++
T Consensus 372 ~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~ 404 (407)
T 2zc0_A 372 ESGKNAIRLNFSRP-SKEEIPIGIKKLAKLYKEK 404 (407)
T ss_dssp SCCTTEEEEECSSS-CTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHH
Confidence 25799998766 8999999999999998765
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=229.93 Aligned_cols=337 Identities=14% Similarity=0.095 Sum_probs=231.2
Q ss_pred ecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEe
Q 013204 22 SEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFT 101 (447)
Q Consensus 22 ~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~ 101 (447)
.+|.++++.+|++++||+++. ++++ .+|++++++.+++.+...+ +.....++.+++++++. .+.++++++
T Consensus 5 ~~~~~~~~~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y------~~~~~~~l~~~la~~~~-~~~~~i~~~ 74 (354)
T 3ly1_A 5 PESAAFTAPSTDNPIRINFNE--NPLG-MSPKAQAAARDAVVKANRY------AKNEILMLGNKLAAHHQ-VEAPSILLT 74 (354)
T ss_dssp ----CCCCCCSSSCEECSSCC--CSSC-CCHHHHHHHHHTGGGTTSC------CHHHHHHHHHHHHHHTT-SCGGGEEEE
T ss_pred cccccccCCCCCceEEccCCC--CCCC-CCHHHHHHHHHHHhhCcCC------CCCchHHHHHHHHHHhC-CChHHEEEe
Confidence 356778889999999998875 5666 7899999999988753222 34567789999999873 457799999
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCC
Q 013204 102 NSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGET 181 (447)
Q Consensus 102 ~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (447)
+||++|++.+++.+. ..+++|++.+++|++........+... ..++....+. .
T Consensus 75 ~g~~~a~~~~~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~-------------~~~~~~~~~~-----~- 127 (354)
T 3ly1_A 75 AGSSEGIRAAIEAYA--------SLEAQLVIPELTYGDGEHFAKIAGMKV-------------TKVKMLDNWA-----F- 127 (354)
T ss_dssp SHHHHHHHHHHHHHC--------CTTCEEEEESSSCTHHHHHHHHTTCEE-------------EEECCCTTSC-----C-
T ss_pred CChHHHHHHHHHHHh--------CCCCeEEECCCCchHHHHHHHHcCCEE-------------EEecCCCCCC-----C-
Confidence 999999999999763 234789999999998865544332211 1112111000 0
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccc-cc
Q 013204 182 EEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFG-CD 260 (447)
Q Consensus 182 ~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~-~~ 260 (447)
++++|++.+.+. .++++|+++..++.+|.+. +.+.+.+|+++| +||+++|+||+|+++...+.... ..
T Consensus 128 -------d~~~l~~~l~~~--~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~ 196 (354)
T 3ly1_A 128 -------DIEGLKAAVAAY--SGPSIVYLVNPNNPTGTIT-PADVIEPWIASK-PANTMFIVDEAYAEFVNDPRFRSISP 196 (354)
T ss_dssp -------CHHHHHHHHHTC--SSCEEEEEESSCTTTCCCC-CHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHH
T ss_pred -------CHHHHHHHhccC--CCCCEEEEeCCCCCcCCCc-CHHHHHHHHHhC-CCCeEEEEeccHHHhccccccCCHHH
Confidence 147788877631 2355666656666666544 666677777777 79999999999998876653211 11
Q ss_pred ---cC-CCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHH
Q 013204 261 ---KY-SIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVE 335 (447)
Q Consensus 261 ---~~-~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~ 335 (447)
.. +....+.++||.++.+++++|++++++++++.+... . ..++.++++++++.++|+..+ -++..+
T Consensus 197 ~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 267 (354)
T 3ly1_A 197 MITQGAENIILLKTFSKIHAMAGMRVGYAVAHPTVIALMGRY-------V--AGEKINFSGVDAALASMNDSAFITYSKK 267 (354)
T ss_dssp HHHTTCSSEEEEEESSSTTCCGGGCCEEEECCHHHHHHHGGG-------T--TCSCCCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhhhcCCCEEEEeeChhhccChhhhheeeecCHHHHHHHHHh-------c--CCCCCCHHHHHHHHHHhcCHHHHHHHHH
Confidence 11 222334468999973338999999999999988642 1 236778899988888876432 134556
Q ss_pred HHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEE----eeCCEEEE
Q 013204 336 QVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR----VSGDNIMM 411 (447)
Q Consensus 336 ~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~----~~g~~iR~ 411 (447)
+++++.+++++.|+++ .... .++.|.++.+.+.. . ...+.+.|.++||++. ...+.+|+
T Consensus 268 ~~~~~~~~l~~~l~~~-~~~~---~~~~~~~~~~~~~~-~------------~~~~~~~l~~~gi~v~g~~~~~~~~iRi 330 (354)
T 3ly1_A 268 SNDVSRQILLKALEDL-KLPY---LPSEGNFVFHQLVV-P------------LKDYQTHMADAGVLIGRAFPPADNWCRI 330 (354)
T ss_dssp HHHHHHHHHHHHHHHH-TCCB---CCCCSSEEEEECSS-C------------HHHHHHHHHHTTEECCCCCTTCTTEEEE
T ss_pred HHHHHHHHHHHHHHHC-CCeE---CCCCceEEEEECCC-C------------HHHHHHHHHHCCEEEeecCCCCCCEEEE
Confidence 7777777888888776 3222 24567777777653 1 4568888999999987 11367999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 412 SPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 412 ~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+. .+++++++++++|++++++
T Consensus 331 s~---~~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 331 SL---GTPQEMQWVADTMREFRKK 351 (354)
T ss_dssp EC---CCHHHHHHHHHHHHHHHHT
T ss_pred Ec---CCHHHHHHHHHHHHHHHHh
Confidence 94 3899999999999988753
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=232.75 Aligned_cols=342 Identities=13% Similarity=0.124 Sum_probs=217.9
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhHH
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEAN 108 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA~ 108 (447)
.+|++++||.++. ..++ .+|++.+++.+++.+....+....+..+....+++.+.+.+. +.+.+++++++||++|+
T Consensus 28 ~~g~~~i~l~~g~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al 104 (391)
T 3h14_A 28 EAGRRIIHMEVGQ--PGTG-APRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGF 104 (391)
T ss_dssp HTTCCCEECCCSS--CSSC-SCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHH
T ss_pred hcCCCeEEccCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHH
Confidence 4789999999886 4455 389999999998876322222111223344444444444332 24678999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHH
Q 013204 109 DTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188 (447)
Q Consensus 109 ~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (447)
+.+++.+. ..+++|++.+++|++........+... ..++......+. .
T Consensus 105 ~~~~~~l~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~-------------~~v~~~~~~~~~---~-------- 152 (391)
T 3h14_A 105 LLAFTALF--------DSGDRVGIGAPGYPSYRQILRALGLVP-------------VDLPTAPENRLQ---P-------- 152 (391)
T ss_dssp HHHHHHHC--------CTTCEEEEEESCCHHHHHHHHHTTCEE-------------EEEECCGGGTTS---C--------
T ss_pred HHHHHHhc--------CCCCEEEEcCCCCccHHHHHHHcCCEE-------------EEeecCcccCCC---C--------
Confidence 99999763 334789999999998865444322211 111111100000 0
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCe
Q 013204 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDL 268 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~ 268 (447)
+++++++. ++++|+++..++.+|. ..+.+.+++|.++|++||+++|+||+|+++.+.|....... ..+++
T Consensus 153 d~~~l~~~-------~~~~v~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~--~~~~~ 222 (391)
T 3h14_A 153 VPADFAGL-------DLAGLMVASPANPTGT-MLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALE--LTDEC 222 (391)
T ss_dssp CHHHHTTS-------CCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGG--TCSSS
T ss_pred CHHHHHhc-------CCeEEEECCCCCCCCc-cCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhh--cCCCE
Confidence 02445443 3445555565666665 45677899999999999999999999998876664322211 22333
Q ss_pred e---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHH
Q 013204 269 V---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVEQVNKIAPKF 344 (447)
Q Consensus 269 v---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~~~~~~~~~l 344 (447)
+ ++||.++.+++++|++++++++++.+... ....+++.+++++.++.++++..+ -++..++++++.+++
T Consensus 223 i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l 295 (391)
T 3h14_A 223 YVINSFSKYFSMTGWRVGWMVVPEDQVRVVERI-------AQNMFICAPHASQVAALAALDCDAELQANLDVYKANRKLM 295 (391)
T ss_dssp EEEEESSSTTCCTTSCCEEEECCGGGHHHHHHH-------HHHTTCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEechhccCCccceeEEEEeCHHHHHHHHHH-------HhhhccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 3 68999973338999999999998887632 233567788899888888876111 133456666677777
Q ss_pred HHhHhhccCCCceeeEeeee-eEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc-CceEEee--------CCEEEEecC
Q 013204 345 QDGVKAFSDSPIIGEIRGTG-LILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH-GMLVRVS--------GDNIMMSPP 414 (447)
Q Consensus 345 ~~~L~~l~~~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~--------g~~iR~~~~ 414 (447)
.+.|+++ +......+.| .++.+.+..... ....+.+.|+++ ||.+.++ .+.+|++++
T Consensus 296 ~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~ 362 (391)
T 3h14_A 296 LERLPKA---GFTRIAPPDGAFYVYADVSDLTD----------DSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYA 362 (391)
T ss_dssp HHHHHHH---TCCCBCCCCBTTEEEEECTTTCS----------CHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECC
T ss_pred HHHHHHc---CCCcccCCCeeEEEEEecCccCC----------CHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEec
Confidence 7777765 2222223333 455566643111 145677887775 9999874 247999965
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 415 FIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 415 ~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
.++++|++++++|++++++..+
T Consensus 363 --~~~~~i~~~l~~l~~~~~~~~~ 384 (391)
T 3h14_A 363 --RATADIEEGLDRLEAFMQARGE 384 (391)
T ss_dssp --SCHHHHHHHHHHHHHHHHHC--
T ss_pred --CCHHHHHHHHHHHHHHHHHhcc
Confidence 4899999999999999876543
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-27 Score=230.90 Aligned_cols=345 Identities=11% Similarity=0.044 Sum_probs=226.2
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhHH
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEAN 108 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA~ 108 (447)
.+|++++||.++.. .++ .+|.+.+++.+++++....+....+..+....+++.+.+.+. ..+.+++++++||++|+
T Consensus 27 ~~g~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~ 103 (388)
T 1j32_A 27 AEGIDVCSFSAGEP--DFN-TPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSI 103 (388)
T ss_dssp TTTCCCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred hcCCCEEECCCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHH
Confidence 36889999988753 566 689999999998865322222112233444455555544432 13567899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHH
Q 013204 109 DTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188 (447)
Q Consensus 109 ~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (447)
+.+++.+. .++++|++.+++||+....... .|... ..++......+. .
T Consensus 104 ~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~-~g~~~------------~~v~~~~~~~~~-----------~ 151 (388)
T 1j32_A 104 FNLMLAMI--------EPGDEVIIPAPFWVSYPEMVKL-AEGTP------------VILPTTVETQFK-----------V 151 (388)
T ss_dssp HHHHHHHC--------CTTCEEEEESSCCTHHHHHHHH-TTCEE------------EEECCCGGGTTC-----------C
T ss_pred HHHHHHhc--------CCCCEEEEcCCCChhHHHHHHH-cCCEE------------EEecCCcccCCC-----------C
Confidence 99999773 2347899999999997654432 22211 112211000000 0
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-cccc-----C
Q 013204 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-GCDK-----Y 262 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~~~~-----~ 262 (447)
++++|++.+. +++++|++++.++.+|.+ .+.+.+++|.++|++||+++|+||+|+++.+.|..+ .... +
T Consensus 152 d~~~l~~~l~----~~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 226 (388)
T 1j32_A 152 SPEQIRQAIT----PKTKLLVFNTPSNPTGMV-YTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAY 226 (388)
T ss_dssp CHHHHHHHCC----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHH
T ss_pred CHHHHHHhcC----cCceEEEEeCCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHcccccc
Confidence 1367777664 246677777767777755 467899999999999999999999999886655321 1111 2
Q ss_pred CCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHHHH
Q 013204 263 SIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQVNKI 340 (447)
Q Consensus 263 ~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~~~ 340 (447)
+..+++.++||.++.+++|+|++++++++++.+.. .....+++.+++++.++.++|+... -++..++++++
T Consensus 227 ~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 299 (388)
T 1j32_A 227 ERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATK-------IQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAER 299 (388)
T ss_dssp HTEEEEEESTTTTTCTTTCCEEEECCHHHHHHHHH-------HHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHH
T ss_pred CCEEEEeechhccCCcccceEEEEeCHHHHHHHHH-------HHhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 23345567899997444899999999999888763 2234567778888888888886321 13455677777
Q ss_pred HHHHHHhHhhccCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHH-cCceEEee-----CCEEEEec
Q 013204 341 APKFQDGVKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEK-HGMLVRVS-----GDNIMMSP 413 (447)
Q Consensus 341 ~~~l~~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~-----g~~iR~~~ 413 (447)
.+++.+.|+++.+..+ ..+. +.++.+.+..... ....+.+.|++ +||.+.++ .+.+|+++
T Consensus 300 ~~~l~~~L~~~~g~~~---~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~ 366 (388)
T 1j32_A 300 RRYMLDALNAMPGLEC---PKPDGAFYMFPSIAKTGR----------SSLDFCSELLDQHQVATVPGAAFGADDCIRLSY 366 (388)
T ss_dssp HHHHHHHHHTCTTCBC---CCCCBTTEECCBCGGGTC----------CHHHHHHHHHHHHCEECEEGGGGTCTTBEEEEC
T ss_pred HHHHHHHHhhCCCCcc---cCCCeeEEEEEecCCCCC----------CHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEe
Confidence 7888888876532222 2223 3333444432110 14567888876 79999875 36799996
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q 013204 414 PFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 414 ~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+ +++++|++++++|+++++++
T Consensus 367 ~--~~~~~i~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 367 A--TDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp C--SCHHHHHHHHHHHHHHHHHH
T ss_pred c--CCHHHHHHHHHHHHHHHHHh
Confidence 5 79999999999999988654
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-27 Score=229.87 Aligned_cols=329 Identities=13% Similarity=0.131 Sum_probs=216.9
Q ss_pred eCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHH
Q 013204 29 DVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEAN 108 (447)
Q Consensus 29 d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~ 108 (447)
+.||++++||.++. +++| .+|++.+++.+++.+...+ +.....++.+++++++ +.+.+++++++||++|+
T Consensus 20 ~~~~~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~y------~~~~~~~l~~~la~~~-~~~~~~v~~~~g~~~al 89 (364)
T 1lc5_A 20 GISPDQLLDFSANI--NPLG-MPVSVKRALIDNLDCIERY------PDADYFHLHQALARHH-QVPASWILAGNGETESI 89 (364)
T ss_dssp TSCGGGSEECSSCC--CTTC-CCHHHHHHHHHTGGGGGSC------CCTTCHHHHHHHHHHH-TSCGGGEEEESSHHHHH
T ss_pred CCCccceEEecccc--CCCC-CCHHHHHHHHHHHHHhhcC------CCCCHHHHHHHHHHHH-CcCHHHEEECCCHHHHH
Confidence 35788999998875 5677 7899999999988652111 2224567888888887 34567899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHH
Q 013204 109 DTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188 (447)
Q Consensus 109 ~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (447)
+.+++.+ ++ ++|++.+++||++.......+. .. ..++......+..
T Consensus 90 ~~~~~~~---------~g-d~vl~~~p~y~~~~~~~~~~g~-~~------------~~v~~~~~~~~~~----------- 135 (364)
T 1lc5_A 90 FTVASGL---------KP-RRAMIVTPGFAEYGRALAQSGC-EI------------RRWSLREADGWQL----------- 135 (364)
T ss_dssp HHHHHHH---------CC-SEEEEEESCCTHHHHHHHHTTC-EE------------EEEECCGGGTTCC-----------
T ss_pred HHHHHHc---------CC-CeEEEeCCCcHHHHHHHHHcCC-eE------------EEEeCCcccccch-----------
Confidence 9999876 23 6899999999998765544322 11 1111110000000
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCC---CC
Q 013204 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYS---IK 265 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~---~~ 265 (447)
+++++....++..++++++|. +.+|. ..+.+++++|.++|++||+++|+||+|+++++.+... ....+ ..
T Consensus 136 ----l~~~~~~~~~~~~~v~i~~p~-nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~-~~~~~~~~~~ 208 (364)
T 1lc5_A 136 ----TDAILEALTPDLDCLFLCTPN-NPTGL-LPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGF-IPALKDNPHI 208 (364)
T ss_dssp ----CTTHHHHCCTTCCEEEEESSC-TTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCS-GGGCTTCTTE
T ss_pred ----hHHHHHhccCCCCEEEEeCCC-CCCCC-CCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccch-hhHhccCCCE
Confidence 111222222233334556664 44554 4678999999999999999999999999876543221 22222 22
Q ss_pred CCeeeecccCCCcccceeEEE-eChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHHHHHHHHHH
Q 013204 266 PDLVSFAKALSSAYMPIGAIL-VSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVEQVNKIAPK 343 (447)
Q Consensus 266 ~d~v~~sK~l~gg~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~~~~~~~~~ 343 (447)
..+.++||.++.+++|+|+++ +++++++.+... ..+++.++++++++.++|+..+ -++..++++++.++
T Consensus 209 i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 279 (364)
T 1lc5_A 209 WVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQ---------QMPWSVNALAALAGEVALQDSAWQQATWHWLREEGAR 279 (364)
T ss_dssp EEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHH---------SCTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECchhhcCCccceEEEEECCHHHHHHHHHh---------CCCCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 234478999984338999999 999998888642 1356788999988888876411 12334555566666
Q ss_pred HHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-------CCEEEEecCCC
Q 013204 344 FQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-------GDNIMMSPPFI 416 (447)
Q Consensus 344 l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------g~~iR~~~~~~ 416 (447)
+.+.|+++ +.+...++.|.++.+.+... . ..+.+.|+++||.+.++ .+.+|++.
T Consensus 280 l~~~L~~~---~~~~~~~~~g~~~~~~~~~~--~-----------~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~--- 340 (364)
T 1lc5_A 280 FYQALCQL---PLLTVYPGRANYLLLRCERE--D-----------IDLQRRLLTQRILIRSCANYPGLDSRYYRVAI--- 340 (364)
T ss_dssp HHHHHHTS---TTEEECCCSSSEEEEEESCT--T-----------CCHHHHHHTTTEECEECTTSTTCCTTEEEEEC---
T ss_pred HHHHHhcC---CCCEECCCCCeEEEEECCCc--H-----------HHHHHHHHHCCcEEeeCcccCCCCCCEEEEEe---
Confidence 66666654 33333455677777776531 1 12778888999999875 25799993
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 013204 417 MSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 417 ~t~e~i~~~~~~l~~~l~~~ 436 (447)
.+++++++++++|++.++++
T Consensus 341 ~~~~~~~~l~~~l~~~~~~~ 360 (364)
T 1lc5_A 341 RSAAQNERLLAALRNVLTGI 360 (364)
T ss_dssp CCHHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHHhhcc
Confidence 47899999999999887765
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-27 Score=227.08 Aligned_cols=328 Identities=13% Similarity=0.079 Sum_probs=227.4
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQ 111 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~A 111 (447)
.+.++||+++. ++++ .+|++.+++.+++.+.... ..+.....++++++++++...+.+++++++||++|++.+
T Consensus 29 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~----~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~ 101 (367)
T 3euc_A 29 SHGLVKLDAME--NPYR-LPPALRSELAARLGEVALN----RYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISML 101 (367)
T ss_dssp CTTCEECCSSC--CCCC-CCHHHHHHHHHHHHHHHTT----CSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHH
T ss_pred CCCeeEccCCC--CCCC-CCHHHHHHHHHHhhhhhhh----cCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHH
Confidence 46799998875 5565 7899999999988742110 112335678999999887422567999999999999999
Q ss_pred HHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHH
Q 013204 112 VKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191 (447)
Q Consensus 112 l~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (447)
++.+. ..+++|++.+++|+++.......+... ..++....+. . +++
T Consensus 102 ~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~g~~~-------------~~v~~~~~~~-----~--------d~~ 147 (367)
T 3euc_A 102 ALAAA--------RPGAKVMAPVPGFVMYAMSAQFAGLEF-------------VGVPLRADFT-----L--------DRG 147 (367)
T ss_dssp HHHTC--------CTTCEEEEEESCSCCSCHHHHTTTCEE-------------EEEECCTTSC-----C--------CHH
T ss_pred HHHHc--------CCCCEEEEcCCCHHHHHHHHHHcCCeE-------------EEecCCCCCC-----C--------CHH
Confidence 99763 234789999999999865544322211 1122111100 0 147
Q ss_pred HHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhc--CCEEEEehhhcCCCccccccccccCCCCCCee
Q 013204 192 NLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKY--DILFIADEVICAFGRLGTMFGCDKYSIKPDLV 269 (447)
Q Consensus 192 ~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~--g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v 269 (447)
++++.+... ++++|+++..++.+|.+ .+.+.+++|.++|++| |+++|+||+|++|+..+........+...++.
T Consensus 148 ~l~~~l~~~---~~~~v~~~~~~nptG~~-~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~ 223 (367)
T 3euc_A 148 AMLAAMAEH---QPAIVYLAYPNNPTGNL-FDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMR 223 (367)
T ss_dssp HHHHHHHHH---CCSEEEEESSCTTTCCC-CCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEE
T ss_pred HHHHHhhcc---CCCEEEEcCCCCCCCCC-CCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEe
Confidence 788877642 34566666666666654 4678899999999999 99999999999886443322333333334556
Q ss_pred eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHhH
Q 013204 270 SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE-RNIVEQVNKIAPKFQDGV 348 (447)
Q Consensus 270 ~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-~~~~~~~~~~~~~l~~~L 348 (447)
++||. +.+++++|++++++++++.+... ..+++.++++++++.++|+..+. ++..++++++.+++.+.|
T Consensus 224 s~sK~-~~~G~r~G~~~~~~~~~~~~~~~---------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l 293 (367)
T 3euc_A 224 TVSKL-GLAGIRLGYVAGDPQWLEQLDKV---------RPPYNVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGM 293 (367)
T ss_dssp ECCCT-TSCSCCEEEEEECHHHHHHHGGG---------CCSSCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhh-cccccCceeeeeCHHHHHHHHHh---------CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 78998 54448999999999999888632 13567889999998888875221 344566666777777777
Q ss_pred hhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-------CEEEEecCCCCCHHH
Q 013204 349 KAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-------DNIMMSPPFIMSPEE 421 (447)
Q Consensus 349 ~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-------~~iR~~~~~~~t~e~ 421 (447)
+++ +.+....+.|.++.+.+. . ...+.+.|.++||++.++. +.+|++.. ++++
T Consensus 294 ~~~---~g~~~~~~~~~~~~~~~~--~------------~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~---~~~~ 353 (367)
T 3euc_A 294 AAH---GGVTVFPSAANFLLARVP--D------------AAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS---TPEE 353 (367)
T ss_dssp HTS---TTCEECCCSSSEEEEECS--C------------HHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC---CHHH
T ss_pred HhC---CCcEECCCCCeEEEEECC--C------------HHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC---CHHH
Confidence 665 223334556777777664 1 3457888999999998753 57999943 9999
Q ss_pred HHHHHHHHHHHHH
Q 013204 422 VDELISKYGKALK 434 (447)
Q Consensus 422 i~~~~~~l~~~l~ 434 (447)
+++++++|+++++
T Consensus 354 i~~~~~~l~~~l~ 366 (367)
T 3euc_A 354 NAQFLEAFAASLQ 366 (367)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988763
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.5e-28 Score=233.26 Aligned_cols=333 Identities=14% Similarity=0.072 Sum_probs=219.5
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCC-hHHHHHHHHHHHhc----Cc-CCCC-eEEEeC
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTT-KPSLDLAKELLEMF----TA-SKMA-KVFFTN 102 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~----~~-~~~~-~v~~~~ 102 (447)
.+|++++||.++. ..+| .+|.+.+++.+++.+... + ..+. ....++.+.+++++ .. ..++ ++++++
T Consensus 22 ~~g~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~-~---~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~ 94 (376)
T 2dou_A 22 ERGVGLIDLSIGS--TDLP-PPEAPLKALAEALNDPTT-Y---GYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALI 94 (376)
T ss_dssp HTTCCCEECSSCC--CCCC-CCHHHHHHHHHHTTCGGG-S---SCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEES
T ss_pred ccCCCEEeccCCC--CCCC-CCHHHHHHHHHHHhCCCc-C---CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcC
Confidence 4688999998875 3677 589999999998864211 1 1122 34566777777665 32 1334 899999
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCCh
Q 013204 103 SGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETE 182 (447)
Q Consensus 103 sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (447)
||++|++.+++.+. .++++|++.+++||+........+.... .++.++.+. .+
T Consensus 95 g~~~a~~~~~~~l~--------~~gd~vl~~~p~y~~~~~~~~~~g~~~~-------------~~~~~~~~~-----~d- 147 (376)
T 2dou_A 95 GSQEGLAHLLLALT--------EPEDLLLLPEVAYPSYFGAARVASLRTF-------------LIPLREDGL-----AD- 147 (376)
T ss_dssp SHHHHHHHHHHHHC--------CTTCEEEEESSCCHHHHHHHHHTTCEEE-------------EECBCTTSS-----BC-
T ss_pred CcHHHHHHHHHHhc--------CCCCEEEECCCCcHhHHHHHHHcCCEEE-------------EeeCCCCCC-----CC-
Confidence 99999999999763 2347899999999998765544322111 111110000 00
Q ss_pred hHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-cccc
Q 013204 183 EEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-GCDK 261 (447)
Q Consensus 183 ~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~~~~ 261 (447)
++++++.+. +++++|+++..++.+|.+ .+.+++++|.++|++||+++|+||+|+++.+.|... ....
T Consensus 148 -------~~~l~~~l~----~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~ 215 (376)
T 2dou_A 148 -------LKAVPEGVW----REAKVLLLNYPNNPTGAV-ADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLAL 215 (376)
T ss_dssp -------GGGSCHHHH----HHEEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGS
T ss_pred -------HHHHHHhhc----cCceEEEECCCCCCcCcc-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhc
Confidence 255666554 245666666556666654 578899999999999999999999999886655321 1222
Q ss_pred CC---CCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHH
Q 013204 262 YS---IKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQ 336 (447)
Q Consensus 262 ~~---~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~ 336 (447)
.+ ....+.++||.++.+++|+|++++++++++.+... ....+++.++++++++.++|+..+ -++..++
T Consensus 216 ~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 288 (376)
T 2dou_A 216 PGAKERVVELFSLSKSYNLAGFRLGFALGSEEALARLERV-------KGVIDFNQYAGVLRMGVEALKTPKEVVRGYARV 288 (376)
T ss_dssp TTGGGTEEEEEEHHHHHTCGGGCCEEEEECHHHHHHHHHH-------HHHHCCCSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCcEEEEecchhhcCChhheeEEEecCHHHHHHHHHH-------HHhcccCCCHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 22 22334478999974338999999999998887632 222355678888888888886421 1233455
Q ss_pred HHHHHHHHHHhHhhccCCCceeeEee-eeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-------CCE
Q 013204 337 VNKIAPKFQDGVKAFSDSPIIGEIRG-TGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-------GDN 408 (447)
Q Consensus 337 ~~~~~~~l~~~L~~l~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------g~~ 408 (447)
++++.+++.+.|+++ +....+ .|.++.+.+.... ....+.+.|+++||++.++ .+.
T Consensus 289 ~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~gi~v~~g~~f~~~~~~~ 352 (376)
T 2dou_A 289 YRERALGMAEALKGV-----LSLLPPRATMYLWGRLPEGV-----------DDLEFGLRLVERGVALAPGRGFGPGGKGF 352 (376)
T ss_dssp HHHHHHHHHHHHTTT-----SEECCCCBSSEEEEECCTTC-----------CHHHHHHHHHHTTEECEEGGGGCGGGTTE
T ss_pred HHHHHHHHHHHHHHh-----cCccCCCeeEEEEEECCCCC-----------CHHHHHHHHHHCCEEEcCchhhCCCCCCe
Confidence 556666666666553 222223 3456667765321 1346888999999999875 367
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 409 IMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 409 iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
+|++++ .++++|++++++|++++
T Consensus 353 ~Ris~~--~~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 353 VRIALV--RPLEELLEAAKRIREAL 375 (376)
T ss_dssp EEEECC--SCHHHHHHHHHHHHHTC
T ss_pred EEEEec--CCHHHHHHHHHHHHHHh
Confidence 999965 48999999999998764
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-27 Score=229.48 Aligned_cols=341 Identities=11% Similarity=0.073 Sum_probs=223.4
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc-CCCCe-EEEeCChhhHHHH
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA-SKMAK-VFFTNSGSEANDT 110 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~-v~~~~sGseA~~~ 110 (447)
..++||.++. ..++ .+|++.+++.+++++....+....+..+....+++.+.+.+.. .+.++ +++++||++|++.
T Consensus 26 ~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~ 102 (389)
T 1gd9_A 26 KDVISLGIGE--PDFD-TPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLM 102 (389)
T ss_dssp SSCEECCCCS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHH
T ss_pred cCeEecCCCC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHH
Confidence 4689998775 3566 6899999999998763222221112333444455555444331 35678 9999999999999
Q ss_pred HHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHH
Q 013204 111 QVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190 (447)
Q Consensus 111 Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (447)
+++.+. .++++|++.+++||+........ |... ..++......+. .++
T Consensus 103 ~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~-g~~~------------~~v~~~~~~~~~-----------~d~ 150 (389)
T 1gd9_A 103 GLSAFL--------KDGEEVLIPTPAFVSYAPAVILA-GGKP------------VEVPTYEEDEFR-----------LNV 150 (389)
T ss_dssp HHTTTC--------CTTCEEEEEESCCTTHHHHHHHH-TCEE------------EEEECCGGGTTC-----------CCH
T ss_pred HHHHhC--------CCCCEEEEcCCCchhHHHHHHHC-CCEE------------EEeccCCccCCC-----------CCH
Confidence 998763 23478999999999986544332 2211 111111000000 013
Q ss_pred HHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc-ccccccC-CC-CCC
Q 013204 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT-MFGCDKY-SI-KPD 267 (447)
Q Consensus 191 ~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~-~~~~~~~-~~-~~d 267 (447)
++|++.+. + ++++|++++.++.+|.+ .+.+.+++|.++|++||+++|+||+|+++.+.|. ......+ +. ..|
T Consensus 151 ~~l~~~l~---~-~~~~v~~~~~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (389)
T 1gd9_A 151 DELKKYVT---D-KTRALIINSPCNPTGAV-LTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERT 225 (389)
T ss_dssp HHHHHHCC---T-TEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGE
T ss_pred HHHHHhcC---c-CceEEEEECCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCE
Confidence 67777664 2 45666666666666654 5788999999999999999999999998866654 2222222 21 234
Q ss_pred ee--eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh----hcHHHHHHHHH
Q 013204 268 LV--SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE----RNIVEQVNKIA 341 (447)
Q Consensus 268 ~v--~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~----~~~~~~~~~~~ 341 (447)
++ ++||.++.+++|+|++++++++++.+... ....+++.+++++.++.++|+.... ++..++++++.
T Consensus 226 i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 298 (389)
T 1gd9_A 226 ITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKF-------QMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRR 298 (389)
T ss_dssp EEEEESTTTTTCGGGCCEEEECCHHHHHHHHHH-------HTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhcCCcccceEEEEECHHHHHHHHHH-------HhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Confidence 43 68999974448999999999998888632 2334677788888888888874332 34456677777
Q ss_pred HHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEee-------CCEEEEec
Q 013204 342 PKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVS-------GDNIMMSP 413 (447)
Q Consensus 342 ~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------g~~iR~~~ 413 (447)
+++.+.|+++ +..+.. ...|.++.+.+..... ....+.+.|+ ++||++.++ .+.+|+++
T Consensus 299 ~~l~~~L~~~-g~~~~~--~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~ 365 (389)
T 1gd9_A 299 KLVWKRLNEM-GLPTVK--PKGAFYIFPRIRDTGL----------TSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISY 365 (389)
T ss_dssp HHHHHHHHHT-TCCCCC--CCBTTEECCBCGGGTC----------CHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEEC
T ss_pred HHHHHHHHHc-CCeecC--CCeeeEEEEeccCCCC----------CHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEe
Confidence 8888888775 333221 1224445555542110 1456788887 899999875 35799996
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 013204 414 PFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 414 ~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+ .++++|++++++|++++++
T Consensus 366 ~--~~~~~i~~~l~~l~~~~~~ 385 (389)
T 1gd9_A 366 A--TAYEKLEEAMDRMERVLKE 385 (389)
T ss_dssp C--SCHHHHHHHHHHHHHHHHH
T ss_pred c--CCHHHHHHHHHHHHHHHHh
Confidence 6 4999999999999998865
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-26 Score=226.43 Aligned_cols=336 Identities=17% Similarity=0.170 Sum_probs=224.4
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcc---cccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY---HSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEA 107 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA 107 (447)
||++|+||+++. ..++| .+|++.+++.+++.+.... +.......+...++++++++++. .. +.++.++|+++
T Consensus 44 ~g~~~i~~~~~~-~~~~~-~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~--~~-~~i~~~sG~~a 118 (401)
T 2bwn_A 44 GKQDITVWCGND-YLGMG-QHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQ--KE-AALVFSSAYNA 118 (401)
T ss_dssp CEEEEEECSCSC-TTSGG-GCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTT--CS-EEEEESCHHHH
T ss_pred CCCcEEEeeCCC-cccCC-CCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhC--CC-cEEEECCcHHH
Confidence 789999998762 12344 3789999999998763221 11222355678899999999973 23 44455778889
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 108 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 108 ~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
+..+++++... .+++.|++..+.|++.... ....|.. +..++..
T Consensus 119 ~~~~~~~l~~~------~~gd~Vl~~~~~~~~~~~~-~~~~g~~------------~~~v~~~----------------- 162 (401)
T 2bwn_A 119 NDATLSTLRVL------FPGLIIYSDSLNHASMIEG-IKRNAGP------------KRIFRHN----------------- 162 (401)
T ss_dssp HHHHHHHHHHH------STTCEEEEETTCCHHHHHH-HHHSCCC------------EEEECTT-----------------
T ss_pred HHHHHHHHhcC------CCCCEEEECchhhHHHHHH-HHHcCCe------------EEEEcCC-----------------
Confidence 99998865321 1235777777666554433 2222221 1112211
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc--CCCccccccccccCCC-
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC--AFGRLGTMFGCDKYSI- 264 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~--g~g~~g~~~~~~~~~~- 264 (447)
+.+++++++....++++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ .+|..|..+. ...++
T Consensus 163 -d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~-~~~~~~ 236 (401)
T 2bwn_A 163 -DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVA-ERDGLM 236 (401)
T ss_dssp -CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHH-HHHTCG
T ss_pred -CHHHHHHHHHhhccCCceEEEEecCcCCCCCcCC----HHHHHHHHHHcCCEEEEeccccccccCCCCceee-eccCcc
Confidence 1377888887644346778999999998898876 9999999999999999999998 3454554333 33343
Q ss_pred -CCCee--eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh---hcHHHHHH
Q 013204 265 -KPDLV--SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE---RNIVEQVN 338 (447)
Q Consensus 265 -~~d~v--~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~ 338 (447)
.+|++ ++||+++.. .|++++++++++.+..... .+ . .+.+.++++++++.++++.++. ++..++++
T Consensus 237 ~~~~i~~~s~sK~~~~~---GG~~~~~~~~~~~l~~~~~---~~-~-~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~ 308 (401)
T 2bwn_A 237 HRIDIFNGTLAKAYGVF---GGYIAASARMVDAVRSYAP---GF-I-FSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQ 308 (401)
T ss_dssp GGCSEEEEESSSTTCSC---CEEEEECHHHHHHHHHHCH---HH-H-TSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred ccCcEEEeechhhccCC---CCEEecCHHHHHHHHHhCc---Cc-e-ecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 24554 789999852 2788899988887653110 11 1 1223356888888889988765 35778888
Q ss_pred HHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEeeC--------CEE
Q 013204 339 KIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVSG--------DNI 409 (447)
Q Consensus 339 ~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~g--------~~i 409 (447)
++.+++++.|+++ +..+.. ..+.++.+.+.... ....+.+.|+ ++||.+.++. +.+
T Consensus 309 ~~~~~l~~~L~~~-g~~~~~---~~~~~~~~~~~~~~-----------~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~i 373 (401)
T 2bwn_A 309 MHAKVLKMRLKAL-GMPIID---HGSHIVPVVIGDPV-----------HTKAVSDMLLSDYGVYVQPINFPTVPRGTERL 373 (401)
T ss_dssp HHHHHHHHHHHHH-TCCBCC---CSSSCEEEECCCHH-----------HHHHHHHHHHHHHCEECCEECTTTSCTTCCEE
T ss_pred HHHHHHHHHHHHC-CCcccC---CCCCeEEEEeCChH-----------HHHHHHHHHHhcCCEEEeecCCCCCCCCCceE
Confidence 8999999999876 433321 23446666654211 2445788886 7899987642 479
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 410 MMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 410 R~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
|++++..++++++++++++|+++++++
T Consensus 374 Ris~~~~~t~~~i~~~~~~l~~~~~~~ 400 (401)
T 2bwn_A 374 RFTPSPVHDLKQIDGLVHAMDLLWARC 400 (401)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHC---
T ss_pred EEEeeCCCCHHHHHHHHHHHHHHHHhc
Confidence 999999899999999999999887653
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-27 Score=232.94 Aligned_cols=351 Identities=15% Similarity=0.108 Sum_probs=229.9
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCC---cccccCcCCChHHHHHHHHHHHhcCc--CCCCeEEEeCChhh
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP---FYHSFWNRTTKPSLDLAKELLEMFTA--SKMAKVFFTNSGSE 106 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~v~~~~sGse 106 (447)
++.++||.++... ..|+.+|++.+++.+++++.. ..+....+..+....+++.+.+.+.. .+.+++++++||++
T Consensus 42 ~~~~idl~~g~~~-~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~ 120 (425)
T 1vp4_A 42 DKDAISFGGGVPD-PETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQ 120 (425)
T ss_dssp STTCEECCCCSCC-GGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHH
T ss_pred CCCceeCCCCCCC-cccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHH
Confidence 5679999888643 457889999999999887531 11111112233344444444433231 35679999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHH
Q 013204 107 ANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYS 186 (447)
Q Consensus 107 A~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (447)
|++.+++.+. .++++|++.+++||++....... |... ..++.... +
T Consensus 121 al~~~~~~l~--------~~gd~Vl~~~p~y~~~~~~~~~~-g~~~------------~~v~~~~~------~------- 166 (425)
T 1vp4_A 121 ALDLIGKLFL--------DDESYCVLDDPAYLGAINAFRQY-LANF------------VVVPLEDD------G------- 166 (425)
T ss_dssp HHHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHTT-TCEE------------EEEEEETT------E-------
T ss_pred HHHHHHHHhC--------CCCCEEEEeCCCcHHHHHHHHHc-CCEE------------EEeccCCC------C-------
Confidence 9999999763 23478999999999986555432 2211 11111000 0
Q ss_pred HHHHHHHHHHHHhhC----CCcEEEE-EEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccc-cccc
Q 013204 187 TRLANNLEDLILKEG----PETIAAF-IAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTM-FGCD 260 (447)
Q Consensus 187 ~~~~~~le~~l~~~~----~~~~a~v-i~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~-~~~~ 260 (447)
.++++|++.+.... ..++++| ++...++.+|.+ .+.+++++|.++|++||+++|+||+|+++.+.|.. ....
T Consensus 167 -~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~ 244 (425)
T 1vp4_A 167 -MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVT-TSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIF 244 (425)
T ss_dssp -ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHH
T ss_pred -CCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCc-CCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHH
Confidence 11477777775410 1256676 455556666644 57889999999999999999999999988665543 2222
Q ss_pred cCCCCCC---eeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHH--h--hhcH
Q 013204 261 KYSIKPD---LVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIY--K--ERNI 333 (447)
Q Consensus 261 ~~~~~~d---~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~--~--~~~~ 333 (447)
.++..++ +.++||.++.| +|+|++++++++++.+... ....+++.++++++++.++|+.. . -++.
T Consensus 245 ~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 316 (425)
T 1vp4_A 245 KIGGPERVVLLNTFSKVLAPG-LRIGMVAGSKEFIRKIVQA-------KQSADLCSPAITHRLAARYLERYDLLEQLKPT 316 (425)
T ss_dssp HHHCTTTEEEEEESTTTTCGG-GCEEEEECCHHHHHHHHHH-------HHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHH
T ss_pred HhCCCCCEEEEeccccccccc-cceEEEeeCHHHHHHHHHH-------hhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHH
Confidence 2221222 34789999954 8999999999998887632 22234566889999888888753 1 1344
Q ss_pred HHHHHHHHHHHHHhHhhc-cCCCceeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee------
Q 013204 334 VEQVNKIAPKFQDGVKAF-SDSPIIGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS------ 405 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l-~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------ 405 (447)
.++++++.+++.+.|+++ +..+.+..+ +..|.++.+.+..... ...+.+.|+++||++.++
T Consensus 317 ~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~-----------~~~l~~~l~~~gi~v~~g~~f~~~ 385 (425)
T 1vp4_A 317 IELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFD-----------TWEMFEYAKRKKVFYVPGRVFKVY 385 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCTTCC-----------TTTTHHHHHHHTEECEEGGGGCTT
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCceEEecCCccEEEEEEcCCCCC-----------HHHHHHHHHHCCCEEECchhhcCC
Confidence 566677778888888764 321122222 3446677777753211 123677888889999874
Q ss_pred ---CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013204 406 ---GDNIMMSPPFIMSPEEVDELISKYGKALKATEER 439 (447)
Q Consensus 406 ---g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 439 (447)
.+.+|++++. .++++|++++++|+++++++.++
T Consensus 386 ~~~~~~iRis~~~-~~~e~i~~~l~~l~~~l~~~~~~ 421 (425)
T 1vp4_A 386 DEPSPSMRLSFCL-PPDEKIVEGIKRLREVVLEYGKE 421 (425)
T ss_dssp CCCCSEEEEECSS-SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCC-CCHHHHHHHHHHHHHHHHHHHhh
Confidence 2569999876 38999999999999999887654
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-27 Score=231.15 Aligned_cols=343 Identities=13% Similarity=0.095 Sum_probs=220.1
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCC-cccccCcCCChHHHHHHHHHHHhc----Cc-CCC-CeEEEeC
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP-FYHSFWNRTTKPSLDLAKELLEMF----TA-SKM-AKVFFTN 102 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~----~~-~~~-~~v~~~~ 102 (447)
.+|++++||.++. ..+| .+|.+.+++.+++.+.. ..+. +.....++.+.+++++ .. .++ +++++++
T Consensus 34 ~~g~~~idl~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~y~----~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~ 106 (412)
T 2x5d_A 34 RRGEDIIDLSMGN--PDGP-TPPHIVEKLCTVAQREDTHGYS----TSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTI 106 (412)
T ss_dssp HTTCCCEECSSCC--CCSC-CCHHHHHHHHHTC-------------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEES
T ss_pred hcCCCEEecCCCC--CCCC-CCHHHHHHHHHHHhCCCCCCCC----CCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcC
Confidence 4789999998876 4567 78999999998876531 1111 1222344555555544 31 245 6899999
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCCh
Q 013204 103 SGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETE 182 (447)
Q Consensus 103 sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (447)
||++|++.+++.+. .++++|++.+++||+........+. .. ..++... +
T Consensus 107 g~~~a~~~~~~~~~--------~~gd~Vl~~~p~~~~~~~~~~~~g~-~~------------~~~~~~~--------~-- 155 (412)
T 2x5d_A 107 GSKEGLAHLMLATL--------DHGDTILVPNPSYPIHIYGAVIAGA-QV------------RSVPLVP--------G-- 155 (412)
T ss_dssp CHHHHHHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHHHTC-EE------------EEEECST--------T--
T ss_pred ChHHHHHHHHHHhC--------CCCCEEEEcCCCchhHHHHHHHcCC-EE------------EEeecCC--------c--
Confidence 99999999999763 2347899999999998655543221 11 1111110 0
Q ss_pred hHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccc-ccccc
Q 013204 183 EEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTM-FGCDK 261 (447)
Q Consensus 183 ~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~-~~~~~ 261 (447)
..+. .+++++++.+. + ++++|+++..++.+|. .++.+++++|.++|++||+++|+||+|+++.+.|.. .....
T Consensus 156 ~~~~-~d~~~l~~~i~---~-~~~~v~l~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~ 229 (412)
T 2x5d_A 156 IDFF-NELERAIRESI---P-KPRMMILGFPSNPTAQ-CVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQ 229 (412)
T ss_dssp SCHH-HHHHHHHHTEE---S-CCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGG
T ss_pred cCCC-CCHHHHHHhcc---c-CceEEEECCCCCCCCC-cCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhh
Confidence 0111 22466665553 2 3344444333454554 457799999999999999999999999988665532 12211
Q ss_pred C----CCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHH
Q 013204 262 Y----SIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVE 335 (447)
Q Consensus 262 ~----~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~ 335 (447)
+ +....+.++||.++.+++|+|++++++++++.+... ....+++.+++++.++.++|+... -++..+
T Consensus 230 ~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 302 (412)
T 2x5d_A 230 VPGAKDIAVEFFTLSKSYNMAGWRIGFMVGNPELVSALARI-------KSYHDYGTFTPLQVAAIAALEGDQQCVRDIAR 302 (412)
T ss_dssp STTGGGTEEEEEECC-CCSCTTSCCEEEEECHHHHHHHHHH-------HHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHH
T ss_pred ccCccCcEEEEecCccccCCcccceEEEEcCHHHHHHHHHH-------HhhhccCCCHHHHHHHHHHHhCCHHHHHHHHH
Confidence 1 222234478999983338999999999998887632 223367788999998888887422 134566
Q ss_pred HHHHHHHHHHHhHhhccCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHH-cCceEEee-------C
Q 013204 336 QVNKIAPKFQDGVKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEK-HGMLVRVS-------G 406 (447)
Q Consensus 336 ~~~~~~~~l~~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~-------g 406 (447)
+++++.+++.+.|+++ +..+ ..+. |.++.+.+...... .....+.+.|++ +||++.++ .
T Consensus 303 ~~~~~~~~l~~~L~~~-g~~~---~~~~~g~~~~~~~~~~~~~--------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~ 370 (412)
T 2x5d_A 303 QYQQRRDVLVKGLREA-GWMV---ENPKASMYVWAKIPEPYAH--------LGSLEFAKKLLQDAKVSVSPGIGFGDYGD 370 (412)
T ss_dssp HHHHHHHHHHHHHHHH-TCCC---CCCSBSSEEEEECCTTTGG--------GCHHHHHHHHHHHHCEECEEGGGGCGGGT
T ss_pred HHHHHHHHHHHHHHHC-CCEe---cCCCeeeEEEEEcCCccCC--------CCHHHHHHHHHHHCCEEEeCchhhCCCCC
Confidence 7777888888888776 3222 2233 44666766421100 013457788865 69999875 3
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 407 DNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 407 ~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
+.+|++++. ++++|++++++|+++++++.
T Consensus 371 ~~iRis~~~--~~~~l~~~l~~l~~~l~~~~ 399 (412)
T 2x5d_A 371 DHVRFALIE--NRDRLRQAVRGIKAMFRADG 399 (412)
T ss_dssp TEEEEECCS--CHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEecC--CHHHHHHHHHHHHHHHHhcC
Confidence 579999764 89999999999999997643
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-26 Score=229.42 Aligned_cols=349 Identities=13% Similarity=0.067 Sum_probs=229.9
Q ss_pred CCCCEEEecCCccccc-cCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc----CCCCeEEEeCCh
Q 013204 30 VNGKKYLDSLAGLWCT-ALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA----SKMAKVFFTNSG 104 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~-~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~~v~~~~sG 104 (447)
.+|+.++||..+.... +-.+.+|.+.+++.+.+.+.... . ..+.....++.+.+++++.. ...+++++++||
T Consensus 51 ~~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~-~--y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~ 127 (427)
T 3dyd_A 51 NPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYN-G--YAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSGC 127 (427)
T ss_dssp CTTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSS-S--CCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSH
T ss_pred cCCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCC-C--CCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecCc
Confidence 4678999998885321 11247899999999998763211 0 11333456777777777631 356799999999
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhH
Q 013204 105 SEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEE 184 (447)
Q Consensus 105 seA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (447)
++|++.+++.+. .++++|++.+++|+++.......+.... .+++.....+
T Consensus 128 t~al~~~~~~l~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~~-------------~~~~~~~~~~--------- 177 (427)
T 3dyd_A 128 SQAIDLCLAVLA--------NPGQNILVPRPGFSLYKTLAESMGIEVK-------------LYNLLPEKSW--------- 177 (427)
T ss_dssp HHHHHHHHHHHC--------CTTCEEEEEESCCTHHHHHHHHTTCEEE-------------EEEEEGGGTT---------
T ss_pred HHHHHHHHHHhc--------CCCCEEEEcCCCchhHHHHHHHcCCEEE-------------EEecccccCC---------
Confidence 999999999874 3357899999999998655544332111 1111000000
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-ccccCC
Q 013204 185 YSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-GCDKYS 263 (447)
Q Consensus 185 ~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~~~~~~ 263 (447)
..+++++++.+. + .+++|+++..++.+|. .++.+.+++|+++|++||+++|+||+|++|++.|..+ ....++
T Consensus 178 --~~d~~~l~~~l~---~-~~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~ 250 (427)
T 3dyd_A 178 --EIDLKQLEYLID---E-KTACLIVNNPSNPCGS-VFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLS 250 (427)
T ss_dssp --EECHHHHHSSCC---T-TEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGC
T ss_pred --CCCHHHHHHHhc---c-CCCEEEEECCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhC
Confidence 001356665553 2 3444454444666664 5678899999999999999999999999998777543 344445
Q ss_pred CCCCee---eecccCCCcccceeEEEeC-------hhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh---
Q 013204 264 IKPDLV---SFAKALSSAYMPIGAILVS-------PEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE--- 330 (447)
Q Consensus 264 ~~~d~v---~~sK~l~gg~~~~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~--- 330 (447)
..++++ ++||.++.+++|+|+++++ +++++.+... ...++++++++++++.++|+....
T Consensus 251 ~~~~vi~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~--------~~~~~~~~~~~~~a~~~~L~~~~~~~~ 322 (427)
T 3dyd_A 251 TDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKL--------SQRILGPCTIVQGALKSILCRTPGEFY 322 (427)
T ss_dssp SSCCEEEEEESTTTSSCGGGCCEEEEEECSTTSSHHHHHHHHHHH--------HHHHCCSCHHHHHHHHHHHHHSCHHHH
T ss_pred CCCcEEEEeeccccCCCcCcceEEEEecCcchhhHHHHHHHHHHH--------HhccCCCCHHHHHHHHHHHHhcCHHHH
Confidence 555566 7899977655999999987 4676666421 112567788999988888874221
Q ss_pred hcHHHHHHHHHHHHHHhHhhccCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEeeC--
Q 013204 331 RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVSG-- 406 (447)
Q Consensus 331 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~g-- 406 (447)
++..++++++.+++.+.|+++ +.+..+.+. |.++.+.+.....+. . .....+.++|+ ++||++.++.
T Consensus 323 ~~~~~~~~~~~~~l~~~L~~~---~g~~~~~p~~g~~~~~~l~~~~~~~-----~-~~~~~~~~~l~~~~gV~v~~g~~~ 393 (427)
T 3dyd_A 323 HNTLSFLKSNADLCYGALAAI---PGLRPVRPSGAMYLMVGIEMEHFPE-----F-ENDVEFTERLVAEQSVHCLPATCF 393 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS---TTEEEECCSBTTEEEEEECGGGCTT-----C-SSHHHHHHHHHHHHCEECEEGGGG
T ss_pred HHHHHHHHHHHHHHHHHHhcC---CCceecCCCeeEEEEEecCHhhcCC-----C-CCHHHHHHHHHHHCCEEEECCccc
Confidence 334566667777777777765 333334333 456666665321100 0 01345777775 8899998763
Q ss_pred ---CEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 407 ---DNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 407 ---~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
+.+|++ +.+++++|++++++|++++++++
T Consensus 394 ~~~~~iRis--~~~~~e~i~~~l~~l~~~l~~~~ 425 (427)
T 3dyd_A 394 EYPNFIRVV--ITVPEVMMLEACSRIQEFCEQHY 425 (427)
T ss_dssp TCTTEEEEE--SCSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEE--ECCCHHHHHHHHHHHHHHHHHhh
Confidence 679999 56899999999999999987653
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-26 Score=224.24 Aligned_cols=323 Identities=13% Similarity=0.081 Sum_probs=219.0
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDT 110 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~ 110 (447)
++++++||+++. ++++ .+|++.+++.++++....+ +.....++.+++++++. .+.+++++++||++|++.
T Consensus 30 ~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y------~~~~~~~lr~~la~~~~-~~~~~v~~~~g~t~a~~~ 99 (363)
T 3ffh_A 30 GLTKITKLSSNE--NPLG-TSKKVAAIQANSSVETEIY------PDGWASSLRKEVADFYQ-LEEEELIFTAGVDELIEL 99 (363)
T ss_dssp TCSCCEECSSCS--CTTC-CCHHHHHHHHTCBSCCCBC----------CHHHHHHHHHHHT-CCGGGEEEESSHHHHHHH
T ss_pred CCCceEEccCCC--CCCC-CCHHHHHHHHHHHHHhhcC------CCcchHHHHHHHHHHhC-CChhhEEEeCCHHHHHHH
Confidence 346899998874 4666 6899999998876543222 33445788888888873 466799999999999999
Q ss_pred HHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHH
Q 013204 111 QVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190 (447)
Q Consensus 111 Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (447)
+++.+. .++++|++.+++|++........+... ..++....+. . ++
T Consensus 100 ~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~-------------~~v~~~~~~~-----~--------d~ 145 (363)
T 3ffh_A 100 LTRVLL--------DTTTNTVMATPTFVQYRQNALIEGAEV-------------REIPLLQDGE-----H--------DL 145 (363)
T ss_dssp HHHHHC--------STTCEEEEEESSCHHHHHHHHHHTCEE-------------EEEECCTTSC-----C--------CH
T ss_pred HHHHHc--------cCCCEEEEcCCChHHHHHHHHHcCCEE-------------EEecCCCCCC-----c--------CH
Confidence 999763 335789999999998765544332211 1112111000 0 13
Q ss_pred HHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCC---
Q 013204 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPD--- 267 (447)
Q Consensus 191 ~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d--- 267 (447)
+++++.+. +++++|+++.+++.+|.+. +.+.+.+|++.|++ |+++|+||+|+++++ |...........+|
T Consensus 146 ~~l~~~i~----~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i 218 (363)
T 3ffh_A 146 EGMLNAID----EKTTIVWICNPNNPTGNYI-ELADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLI 218 (363)
T ss_dssp HHHHHHCC----TTEEEEEEESSCTTTCCCC-CHHHHHHHHTTSCT-TSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEE
T ss_pred HHHHHhcc----cCCCEEEEeCCCCCcCCCc-CHHHHHHHHHhCCC-CcEEEEeCchHhhcC-ccccCHHHHhhcCCCEE
Confidence 66776664 3566777777777777655 55556666666655 999999999998876 54332222212233
Q ss_pred -eeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHH
Q 013204 268 -LVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE-RNIVEQVNKIAPKFQ 345 (447)
Q Consensus 268 -~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-~~~~~~~~~~~~~l~ 345 (447)
+.++||.++.+++|+|++++++++++.+... . .+++.++++++++.++|+..+. ++..++++++.+++.
T Consensus 219 ~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~-------~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 289 (363)
T 3ffh_A 219 ITRTFSKIYGLASARVGYGIADKEIIRQLNIV-------R--PPFNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYE 289 (363)
T ss_dssp EEEESSSTTCCSSCCCEEEEECHHHHHHHHHT-------C--CSCCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeechhhhcCchhceeeeecCHHHHHHHHHh-------C--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 4468999984348999999999999988742 1 3677899999999888863221 334566666777777
Q ss_pred HhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-----CEEEEecCCCCCHH
Q 013204 346 DGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-----DNIMMSPPFIMSPE 420 (447)
Q Consensus 346 ~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-----~~iR~~~~~~~t~e 420 (447)
+.|+++.. +...++.|.++.+.+.. . ...+.+.|.++||++.++. +.+|++++ +++
T Consensus 290 ~~l~~~~g---~~~~~~~~~~~~~~~~~-~------------~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~ 350 (363)
T 3ffh_A 290 AFAKRFEK---VKLYPANGNFVLIDLGI-E------------AGTIFSYLEKNGYITRSGAALGFPTAVRITIG---KEE 350 (363)
T ss_dssp HHHHHCTT---CEECCCCSSEEEEECSS-C------------HHHHHHHHHHTTEECEETTTTTCTTEEEEECC---CHH
T ss_pred HHHhhCCC---ceECCCCCeEEEEECCC-C------------HHHHHHHHHHCCeEEEeCccCCCCCeEEEECC---CHH
Confidence 77766312 22345567777776653 1 4568889999999998753 67999954 999
Q ss_pred HHHHHHHHHHHH
Q 013204 421 EVDELISKYGKA 432 (447)
Q Consensus 421 ~i~~~~~~l~~~ 432 (447)
++++++++|+++
T Consensus 351 ~i~~~~~~l~~~ 362 (363)
T 3ffh_A 351 DNSAVIALLEKL 362 (363)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-27 Score=229.48 Aligned_cols=333 Identities=11% Similarity=0.000 Sum_probs=217.6
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc-CCCCeEEEeCChhhHH
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA-SKMAKVFFTNSGSEAN 108 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~v~~~~sGseA~ 108 (447)
.+| +++||+++. ++++ .+|.+.+++.+++.....+ +...+..+...++++.+.+.+.. .+.+++++++||++|+
T Consensus 21 ~~g-~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y-~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al 95 (376)
T 3ezs_A 21 PKK-RGLDLGIGE--PQFE-TPKFIQDALKNHTHSLNIY-PKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVL 95 (376)
T ss_dssp CSS-CCCBCSSCC--CCSC-CCHHHHHHHHTTGGGGGSC-CCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHH
T ss_pred ccC-CEEEeCCCC--CCCC-CCHHHHHHHHHhhhhcCCC-CCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHH
Confidence 467 899998886 5566 6899999999887432222 11122345555666666555431 2678999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHH
Q 013204 109 DTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188 (447)
Q Consensus 109 ~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (447)
+.+++.+. ...++++|++.+++||++.......+.... .++......+..
T Consensus 96 ~~~~~~~~------~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~-------------~~~~~~~~~~~~----------- 145 (376)
T 3ezs_A 96 FNFPSFVL------FDYQNPTIAYPNPFYQIYEGAAKFIKAKSL-------------LMPLTKENDFTP----------- 145 (376)
T ss_dssp HHHHHHHT------TTCSSCEEEEEESCCTHHHHHHHHTTCEEE-------------EEECCGGGTSCC-----------
T ss_pred HHHHHHHc------CCCCCCEEEEecCCcHhHHHHHHHcCCEEE-------------EcccCCCCCcch-----------
Confidence 99999874 111157899999999998665544332211 111111000000
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccccc-c-------
Q 013204 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGC-D------- 260 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~-~------- 260 (447)
++++.+.. ++++|+++..++.+|. .++.+.+++|+++|++||+++|+||+|+++.+.+..... .
T Consensus 146 ---~l~~~~~~----~~~~v~~~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 217 (376)
T 3ezs_A 146 ---SLNEKELQ----EVDLVILNSPNNPTGR-TLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGN 217 (376)
T ss_dssp ---CCCHHHHH----HCSEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTC
T ss_pred ---hHHhhhcc----CCCEEEEcCCCCCcCC-CCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccc
Confidence 23333332 2334555444555664 457788999999999999999999999988776643322 1
Q ss_pred -cCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh-hcHHHHHH
Q 013204 261 -KYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE-RNIVEQVN 338 (447)
Q Consensus 261 -~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-~~~~~~~~ 338 (447)
..+....+.++||.++.+++|+|++++++++++.+... .+..+++.++++++++.++++..+. ++..++++
T Consensus 218 ~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 290 (376)
T 3ezs_A 218 EAFKNVLVIHSLSKRSSAPGLRSGFIAGDSRLLEKYKAF-------RAYLGYTSANAIQKASEAAWLDDRHAEFFRNIYA 290 (376)
T ss_dssp TTCTTEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHH-------HTTTCCCCCHHHHHHHHHHHHCSHHHHHHHHHHH
T ss_pred cccCcEEEEecchhccCCccceeEEEeeCHHHHHHHHHH-------HhhhcCCCChHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 23333445578999974448999999999999888632 3345677899999988888873111 22334444
Q ss_pred HHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHH-cCceEEee---------CCE
Q 013204 339 KIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEK-HGMLVRVS---------GDN 408 (447)
Q Consensus 339 ~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~---------g~~ 408 (447)
++.+++.+.|+ ++. .+..|.++.+.+.+ ...+.+.|++ +||++.++ .+.
T Consensus 291 ~~~~~l~~~l~-----~~~--~~~~~~~~~~~~~~--------------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~ 349 (376)
T 3ezs_A 291 NNLKLARKIFK-----NTL--IYPYSFYVYLPVQN--------------GENFAKTLYQNEGIITLPALYLGRNRIGADY 349 (376)
T ss_dssp HHHHHHHHHST-----TCC--CCSBSSEEEEECSC--------------HHHHHHHHHHHHCCBCEEGGGGCSTTTTTTE
T ss_pred HHHHHHHHHhc-----CCC--CCCcceEEEEECCC--------------HHHHHHHHHHhCCEEEeCcHHhCCCCCCCCe
Confidence 44455554444 211 34456677776651 3457888887 89999864 267
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 409 IMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 409 iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+|++++ .++++|++++++|++++++
T Consensus 350 iRis~~--~~~~~i~~~l~~l~~~l~~ 374 (376)
T 3ezs_A 350 VRLALV--YDTPLLEKPLEIIETYREN 374 (376)
T ss_dssp EEEECC--SCHHHHHHHHHHHHHHHCC
T ss_pred EEEEEc--CCHHHHHHHHHHHHHHHHh
Confidence 999965 5999999999999998764
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-26 Score=228.46 Aligned_cols=342 Identities=13% Similarity=0.072 Sum_probs=223.2
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhHH
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEAN 108 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA~ 108 (447)
.+|++++||.++.. .++ .+|++.+++ +++++....+....+..+....+++.+...+. ..+.+++++++||++|+
T Consensus 40 ~~g~~~i~l~~~~~--~~~-~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~ 115 (409)
T 2gb3_A 40 KRGVRIHHLNIGQP--DLK-TPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAI 115 (409)
T ss_dssp HTTCEEEECSSCCC--CSC-CCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHH
T ss_pred hcCCCEEeccCCCC--CCC-CCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHH
Confidence 36889999987753 456 578999999 88865322222111223333444444443321 13557899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHH
Q 013204 109 DTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188 (447)
Q Consensus 109 ~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (447)
+.+++.+. .++++|++.+++||+........ |... ..++......+..
T Consensus 116 ~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~-g~~~------------~~v~~~~~~~~~~----------- 163 (409)
T 2gb3_A 116 LFSFAVIA--------NPGDEILVLEPFYANYNAFAKIA-GVKL------------IPVTRRMEEGFAI----------- 163 (409)
T ss_dssp HHHHHHHC--------CTTCEEEEEESCCTHHHHHHHHH-TCEE------------EEEECCGGGTSCC-----------
T ss_pred HHHHHHhC--------CCCCEEEEcCCCchhHHHHHHHc-CCEE------------EEeccCCCCCCcc-----------
Confidence 99999763 33478999999999886544332 2211 1111110000000
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCC-CCC
Q 013204 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSI-KPD 267 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~-~~d 267 (447)
+++|++.+. +++++|+++++++.+|.+ ++.+.+++|.++|++||+++|+||+|+++.+.|..... ..++ ..|
T Consensus 164 -~~~l~~~l~----~~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~ 236 (409)
T 2gb3_A 164 -PQNLESFIN----ERTKGIVLSNPCNPTGVV-YGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA-LSIESDKV 236 (409)
T ss_dssp -CTTGGGGCC----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG-GGSCCTTE
T ss_pred -HHHHHHhhC----cCCeEEEECCCCCCCCCC-cCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc-cccCCCCE
Confidence 144555443 256677777777777754 56789999999999999999999999988665533222 1223 346
Q ss_pred ee--eecccCCCcccceeEEEeCh-hHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHHHHHH
Q 013204 268 LV--SFAKALSSAYMPIGAILVSP-EVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQVNKIAP 342 (447)
Q Consensus 268 ~v--~~sK~l~gg~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~~~~~ 342 (447)
++ ++||.++.+++++|++++++ ++++.+... ....+ +.++++++++.++|+... -+++.++++++.+
T Consensus 237 i~~~s~sK~~g~~G~r~G~~~~~~~~l~~~l~~~-------~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 308 (409)
T 2gb3_A 237 VVIDSVSKKFSACGARVGCLITRNEELISHAMKL-------AQGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVE 308 (409)
T ss_dssp EEEEESTTTTTCGGGCCEEEECSCHHHHHHHHHH-------HHHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred EEEecchhccCCccceEEEEEECcHHHHHHHHHH-------HhccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 55 67999974448999999998 888877532 12233 678888888888885311 2345567777788
Q ss_pred HHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc------CceEEee----------C
Q 013204 343 KFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH------GMLVRVS----------G 406 (447)
Q Consensus 343 ~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------Gi~~~~~----------g 406 (447)
++.+.|+++ +..++ .....|.++.+.+.. . ....+.+.|+++ ||++.++ .
T Consensus 309 ~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~-~-----------~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~ 374 (409)
T 2gb3_A 309 TVLKKLEEH-GLKRF-TKPSGAFYITAELPV-E-----------DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGK 374 (409)
T ss_dssp HHHHHHHHT-TCCCB-CCCSBSSEEEEECSS-S-----------CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTS
T ss_pred HHHHHHHHc-Cceee-eCCCeeEEEEEEeCC-C-----------CHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCC
Confidence 888888776 33321 112234555556541 1 145688888887 9999874 3
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 407 DNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 407 ~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
+.+|++++ +++++|++++++|+++++++++
T Consensus 375 ~~iRis~~--~~~e~i~~~~~~l~~~l~~~~~ 404 (409)
T 2gb3_A 375 KEIRIACV--LEKDLLSRAIDVLMEGLKMFCS 404 (409)
T ss_dssp SEEEEECC--SCHHHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEEeC--CCHHHHHHHHHHHHHHHHHhhh
Confidence 57999976 8999999999999999987653
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.4e-27 Score=229.03 Aligned_cols=338 Identities=14% Similarity=0.083 Sum_probs=222.2
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhHHH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEAND 109 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA~~ 109 (447)
.|++++||.++.. .+++ +|.+.+++.+++++....+....+..+....+++.+.+.+. +.+.+++++++||++|++
T Consensus 39 ~g~~~i~l~~~~~--~~~~-~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~ 115 (389)
T 1o4s_A 39 KGEDVINLTAGEP--DFPT-PEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALF 115 (389)
T ss_dssp TTCCCEECCCSSC--SSCC-CHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEEccCCCC--CCCC-CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHH
Confidence 5788999987753 5674 89999999999876322222111223333344444433322 125679999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (447)
.+++.+. .++++|++.+++|++........ |... ..++......+. .+
T Consensus 116 ~~~~~l~--------~~gd~Vl~~~~~~~~~~~~~~~~-g~~~------------~~v~~~~~~~~~-----------~d 163 (389)
T 1o4s_A 116 NAFMALL--------DPGDEVIVFSPVWVSYIPQIILA-GGTV------------NVVETFMSKNFQ-----------PS 163 (389)
T ss_dssp HHHHHHC--------CTTCEEEEEESCCTTHHHHHHHT-TCEE------------EEEECCGGGTTC-----------CC
T ss_pred HHHHHhC--------CCCCEEEEcCCCchhHHHHHHHc-CCEE------------EEEecCCccCCC-----------CC
Confidence 9999763 23478999999999986554332 2111 111111000000 01
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccC-C-CCCC
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKY-S-IKPD 267 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~-~-~~~d 267 (447)
+++|++.+. +++++|+++..++.+|. .++.+.+++|.++|++||+++|+||+|+++...|.......+ + ...|
T Consensus 164 ~~~l~~~l~----~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~ 238 (389)
T 1o4s_A 164 LEEVEGLLV----GKTKAVLINSPNNPTGV-VYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRI 238 (389)
T ss_dssp HHHHHHTCC----TTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTE
T ss_pred HHHHHHhcc----cCceEEEEcCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcE
Confidence 366776654 24666777666666675 457789999999999999999999999987665532222111 1 1234
Q ss_pred e--eeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 013204 268 L--VSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQ 345 (447)
Q Consensus 268 ~--v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~ 345 (447)
+ .++||.++.+++++|++++++++++.+... ....+++.+++++.++.++|+.. .+++.++++++.+++.
T Consensus 239 i~~~s~sK~~~~~G~r~G~l~~~~~~~~~l~~~-------~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~l~ 310 (389)
T 1o4s_A 239 VYINGFSKSHSMTGWRVGYLISSEKVATAVSKI-------QSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVV 310 (389)
T ss_dssp EEEEESTTTTTCGGGCCEEEECCHHHHHHHHHH-------HHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHH
T ss_pred EEEeechhhcCCcccceEEEEeCHHHHHHHHHH-------hhhcccCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHH
Confidence 4 468999974348999999999988877631 22235677888888887777532 3456778888888888
Q ss_pred HhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEeeC-----CEEEEecCCCCCH
Q 013204 346 DGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVSG-----DNIMMSPPFIMSP 419 (447)
Q Consensus 346 ~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~g-----~~iR~~~~~~~t~ 419 (447)
+.|+++ +..+.. ...|.++.+.+. . ....+.+.|+ ++||.+.++. +.+|++++ .++
T Consensus 311 ~~L~~~-g~~~~~--~~~~~~~~~~~~-~------------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~--~~~ 372 (389)
T 1o4s_A 311 ERLKKM-GVKFVE--PEGAFYLFFKVR-G------------DDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFA--TSI 372 (389)
T ss_dssp HHHHHT-TCCCCC--CSBSSEEEEECS-S------------CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--SCH
T ss_pred HHHHhc-CCeeec--CCcceEEEEeCC-C------------CHHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEe--CCH
Confidence 888876 333221 112445555554 1 1445788887 8899998762 57999976 599
Q ss_pred HHHHHHHHHHHHHHH
Q 013204 420 EEVDELISKYGKALK 434 (447)
Q Consensus 420 e~i~~~~~~l~~~l~ 434 (447)
++|++++++|+++++
T Consensus 373 ~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 373 ERLTEALDRIEDFLN 387 (389)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988764
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-27 Score=234.23 Aligned_cols=356 Identities=12% Similarity=0.072 Sum_probs=224.3
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcC-CcccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhHH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTL-PFYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEAN 108 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA~ 108 (447)
.|+.++||..+.. .++ .+|.+.+++.+++++. ...++...+..+...++++.+.+.+. ..+++++++++||++|+
T Consensus 55 ~~~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al 131 (447)
T 3b46_A 55 QGRELINLGQGFF--SYS-PPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGI 131 (447)
T ss_dssp TTSCCEECCCCSC--SSC-CCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHH
T ss_pred cCCCeEEccCCCC--CCC-CCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence 5778999988753 455 6899999999998751 11122111223344444444444332 23456899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcc---cCCCCCCChhHH
Q 013204 109 DTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYW---RYAHPGETEEEY 185 (447)
Q Consensus 109 ~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 185 (447)
+.+++.+. .++++|++.++.||++.......+..... ++..... .......+ +
T Consensus 132 ~~~~~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~-------------v~~~~~~~~~~~~~~~~~---~ 187 (447)
T 3b46_A 132 LSCLMGLL--------NAGDEVIVFEPFFDQYIPNIELCGGKVVY-------------VPINPPKELDQRNTRGEE---W 187 (447)
T ss_dssp HHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTCEEEE-------------EEEECCGGGGTSCBCSTT---S
T ss_pred HHHHHHHc--------CCCCEEEEeCCCchhHHHHHHHcCCEEEE-------------EeCCCccccccccccccC---c
Confidence 99999773 33578999999999986554433221111 1110000 00000000 0
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccc-----
Q 013204 186 STRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCD----- 260 (447)
Q Consensus 186 ~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~----- 260 (447)
..++++|++.+. +++++|++++.++.+|.+ ++.+.+++|+++|++||+++|+||+|+++.+.|....+.
T Consensus 188 -~~d~~~l~~~l~----~~~~~v~l~~p~nptG~~-~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 261 (447)
T 3b46_A 188 -TIDFEQFEKAIT----SKTKAVIINTPHNPIGKV-FTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPE 261 (447)
T ss_dssp -EECHHHHHTTCC----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHH
T ss_pred -ccCHHHHHHhhc----cCCeEEEEeCCCCCCCcc-cCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCC
Confidence 011366666553 356677777767767754 568999999999999999999999999887665321111
Q ss_pred cCCCCCCeeeecccCCCcccceeEEEe-ChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh----cHHH
Q 013204 261 KYSIKPDLVSFAKALSSAYMPIGAILV-SPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER----NIVE 335 (447)
Q Consensus 261 ~~~~~~d~v~~sK~l~gg~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~----~~~~ 335 (447)
.++..+.+.++||.++.+++++|++++ ++++++.+... .+..+++.+++++.++.++|+....+ +..+
T Consensus 262 ~~~~~i~i~S~sK~~~~~G~riG~~~~~~~~l~~~l~~~-------~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~ 334 (447)
T 3b46_A 262 IGQLTLTVGSAGKSFAATGWRIGWVLSLNAELLSYAAKA-------HTRICFASPSPLQEACANSINDALKIGYFEKMRQ 334 (447)
T ss_dssp HHTTEEEEEEHHHHTTCTTSCCEEEECSCHHHHHHHHHH-------HHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CCCcEEEEecCchhcCCcchhhEEEEeCCHHHHHHHHHH-------HhhccCCCChHHHHHHHHHHhCCcchHHHHHHHH
Confidence 223444566789999843389999999 99998887631 22346677888888888888765322 3556
Q ss_pred HHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCC-CCCC---CcchHHHHHHHHH-HcCceEEee-----
Q 013204 336 QVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNE-PFPP---EWGIGAYFGAQCE-KHGMLVRVS----- 405 (447)
Q Consensus 336 ~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~-~~~~---~~~~~~~~~~~l~-~~Gi~~~~~----- 405 (447)
+++++.+++.+.|+++ +.... .+..|.++.+++.....+.. .++. .......+.++|+ ++||++.++
T Consensus 335 ~~~~~~~~l~~~L~~~-g~~~~--~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~ 411 (447)
T 3b46_A 335 EYINKFKIFTSIFDEL-GLPYT--APEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYI 411 (447)
T ss_dssp HHHHHHHHHHHHHHHH-TCCEE--CCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSC
T ss_pred HHHHHHHHHHHHHHHC-CCeec--CCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCC
Confidence 6777777888888776 33221 23345666777653210000 0000 0012446777776 589998865
Q ss_pred -------CCEEEEecCCCCCHHHHHHHHHHHHH
Q 013204 406 -------GDNIMMSPPFIMSPEEVDELISKYGK 431 (447)
Q Consensus 406 -------g~~iR~~~~~~~t~e~i~~~~~~l~~ 431 (447)
.+.+|++++ .++++|++++++|++
T Consensus 412 ~~~~~~~~~~iRls~~--~~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 412 KEHEKAAENLLRFAVC--KDDAYLENAVERLKL 442 (447)
T ss_dssp GGGGGGGTTEEEEECC--SCHHHHHHHHHHGGG
T ss_pred CCccCCCCCEEEEEEe--CCHHHHHHHHHHHHH
Confidence 357999965 589999999999876
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.7e-27 Score=229.48 Aligned_cols=343 Identities=15% Similarity=0.098 Sum_probs=227.9
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQ 111 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~A 111 (447)
+++++||.++.. ...|+.+|++.+++.+++++..... ..........++.+.+++++. .+.+++++++||++|++.+
T Consensus 31 ~~~~i~l~~g~~-~~~~~~~~~v~~a~~~~~~~~~~~~-~~y~~~~~~~~l~~~la~~~g-~~~~~v~~~~g~~~al~~~ 107 (397)
T 2zyj_A 31 RPGILSFAGGLP-APELFPKEEAAEAAARILREKGEVA-LQYSPTEGYAPLRAFVAEWIG-VRPEEVLITTGSQQALDLV 107 (397)
T ss_dssp STTCEEESSCCC-CGGGCCHHHHHHHHHHHHHHHHHHH-TSCCCTTCCHHHHHHHHHHHT-SCGGGEEEESHHHHHHHHH
T ss_pred CCCceecCCCCC-CchhCCHHHHHHHHHHHHHhcchhh-hCCCCCCCCHHHHHHHHHHhC-CChhhEEEeccHHHHHHHH
Confidence 567899987764 3457888999999999886521000 001122345678888888873 4567999999999999999
Q ss_pred HHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHH
Q 013204 112 VKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191 (447)
Q Consensus 112 l~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (447)
++.+. .++++|++.+++||+........ |... ..++.... + .+++
T Consensus 108 ~~~~~--------~~gd~Vl~~~p~y~~~~~~~~~~-g~~~------------~~~~~~~~------~--------~d~~ 152 (397)
T 2zyj_A 108 GKVFL--------DEGSPVLLEAPSYMGAIQAFRLQ-GPRF------------LTVPAGEE------G--------PDLD 152 (397)
T ss_dssp HHHHC--------CTTCEEEEEESCCHHHHHHHHTT-CCEE------------EEEEEETT------E--------ECHH
T ss_pred HHHhC--------CCCCEEEEeCCCcHHHHHHHHHc-CCEE------------EecCcCCC------C--------CCHH
Confidence 99763 23478999999999987555432 2211 11111000 0 1147
Q ss_pred HHHHHHHhhCCCcEEEE-EEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccc-cccccCCCC---C
Q 013204 192 NLEDLILKEGPETIAAF-IAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTM-FGCDKYSIK---P 266 (447)
Q Consensus 192 ~le~~l~~~~~~~~a~v-i~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~-~~~~~~~~~---~ 266 (447)
+|++.+... ++++| +++..++.+|.+ .+.+++++|.++|++||+++|+||+|+++++.|.. .....++.. +
T Consensus 153 ~l~~~l~~~---~~~~v~~~~~~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~ 228 (397)
T 2zyj_A 153 ALEEVLKRE---RPRFLYLIPSFQNPTGGL-TPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYP 228 (397)
T ss_dssp HHHHHHHHC---CCSCEEECCBSCTTTCCB-CCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCC
T ss_pred HHHHHHhhc---CCeEEEECCCCcCCCCCc-CCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCC
Confidence 788877641 34455 455556666654 57889999999999999999999999988766642 222222222 2
Q ss_pred C---eeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh---hhcHHHHHHHH
Q 013204 267 D---LVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK---ERNIVEQVNKI 340 (447)
Q Consensus 267 d---~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~---~~~~~~~~~~~ 340 (447)
+ +.++||.++.| +++|++++++++++.+... ....+++.+++++.++.++|+... -++..++++++
T Consensus 229 ~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 300 (397)
T 2zyj_A 229 GVIYLGSFSKVLSPG-LRVAFAVAHPEALQKLVQA-------KQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREK 300 (397)
T ss_dssp CEEEEEESTTTTCGG-GCCEEEECCHHHHHHHHHH-------HHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred eEEEEeccccccccc-ceeEEEecCHHHHHHHHHH-------HHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 2 34689999955 8999999999998887632 122345568888888888776321 12344555666
Q ss_pred HHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee---------CCEEE
Q 013204 341 APKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS---------GDNIM 410 (447)
Q Consensus 341 ~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---------g~~iR 410 (447)
.+++.+.|++. +. ++....+..|.++.+.+.... ....+.+.|+++||++.++ .+.+|
T Consensus 301 ~~~l~~~L~~~~~~-g~~~~~~~~g~~~~~~~~~~~-----------~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iR 368 (397)
T 2zyj_A 301 AQAMLHALDREVPK-EVRYTRPKGGMFVWMELPKGL-----------SAEGLFRRALEENVAFVPGGPFFANGGGENTLR 368 (397)
T ss_dssp HHHHHHHHHHHSCT-TSEECCCSBSSEEEEECSTTC-----------CHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEE
T ss_pred HHHHHHHHHHHCCC-CeEEccCCccEEEEEEcCCCC-----------CHHHHHHHHHHCCCEEechHHhcCCCCCCCeEE
Confidence 66777777653 21 111112334667777765321 1456888999999999873 25799
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 411 MSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 411 ~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
++++.. ++++|++++++|+++++++.
T Consensus 369 is~~~~-~~~~i~~~~~~l~~~l~~~~ 394 (397)
T 2zyj_A 369 LSYATL-DREGIAEGVRRLGRALKGLL 394 (397)
T ss_dssp EECSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 998764 89999999999999997764
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=7.5e-27 Score=229.33 Aligned_cols=347 Identities=12% Similarity=0.049 Sum_probs=224.1
Q ss_pred CCCCEEEecCCccccc-cCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhH
Q 013204 30 VNGKKYLDSLAGLWCT-ALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEA 107 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~-~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA 107 (447)
.+|+.++||.++..+. .++ .+|++.+++.+++.+....+....+..+....+++.+.+.+. +.+.+++++++||++|
T Consensus 35 ~~g~~~i~l~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a 113 (406)
T 1xi9_A 35 KKGIKVIRLNIGDPVKFDFQ-PPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEA 113 (406)
T ss_dssp HTTCCCEECCCCCGGGTTCC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred HcCCCEEEecCCCCCcCCCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHH
Confidence 3688999998875432 566 579999999998876432222111223344445555444332 2456799999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 108 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 108 ~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
++.+++.+. .++++|++.+++||+........ |... ..++.... +.+ .
T Consensus 114 l~~~~~~l~--------~~gd~Vl~~~~~~~~~~~~~~~~-g~~~------------~~v~~~~~----------~~~-~ 161 (406)
T 1xi9_A 114 LQLIFGALL--------DPGDEILVPGPSYPPYTGLVKFY-GGKP------------VEYRTIEE----------EDW-Q 161 (406)
T ss_dssp HHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHHT-TCEE------------EEEEEEGG----------GTS-E
T ss_pred HHHHHHHhC--------CCCCEEEEcCCCCccHHHHHHHc-CCEE------------EEeecCCC----------cCC-c
Confidence 999999763 23478999999999976554432 2111 11111000 000 0
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCC-
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKP- 266 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~- 266 (447)
.++++|++.+. +++++|+++++++.+|.+ ++.+.+++|.++|++||+++|+||+|+++.+.+.......++...
T Consensus 162 ~d~~~l~~~l~----~~~~~v~i~~p~nptG~~-~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 236 (406)
T 1xi9_A 162 PDIDDIRKKIT----DRTKAIAVINPNNPTGAL-YDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVP 236 (406)
T ss_dssp ECHHHHHHHCC----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSC
T ss_pred CCHHHHHHhhC----cCceEEEEECCCCCCCCC-cCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCce
Confidence 01367777664 246677777777777754 577899999999999999999999999876533332332222111
Q ss_pred Cee--eecccCCCcccceeEEE--eCh----hHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHH
Q 013204 267 DLV--SFAKALSSAYMPIGAIL--VSP----EVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQ 336 (447)
Q Consensus 267 d~v--~~sK~l~gg~~~~g~~~--~~~----~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~ 336 (447)
+++ ++||.++.+++++|+++ +++ ++++.+... .... ++.+++++.++.++|+... -+++.++
T Consensus 237 ~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~l~~~l~~~-------~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 308 (406)
T 1xi9_A 237 VIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRL-------ARIR-LCPNTPAQFAAIAGLTGPMDYLKEYMKK 308 (406)
T ss_dssp EEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHH-------HHHT-CCSCSHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred EEEEeccccccCCCccEEEEEEEecCchhHHHHHHHHHHH-------HHhh-cCCCHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 344 57899984348999999 898 888887632 1112 5667888888888885321 1345567
Q ss_pred HHHHHHHHHHhHhhccCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEee-------CC
Q 013204 337 VNKIAPKFQDGVKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVS-------GD 407 (447)
Q Consensus 337 ~~~~~~~l~~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------g~ 407 (447)
++++.+++.+.|++++ .+....+. |.++.+.+...... ....+.+.|+ ++||++.++ .+
T Consensus 309 ~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~ 376 (406)
T 1xi9_A 309 LKERRDYIYKRLNEIP---GISTTKPQGAFYIFPKIEVGPWK---------NDKEFVLDVLHNAHVLFVHGSGFGEYGAG 376 (406)
T ss_dssp HHHHHHHHHHHHHTST---TEECCCCCBSSEECCEECSCSCS---------SHHHHHHHHHHHHCEECEEGGGGCGGGTT
T ss_pred HHHHHHHHHHHHHhCC---CCeeecCCeeEEEEEecCccCCC---------CHHHHHHHHHHhCCEEEeCchhcCCCCCC
Confidence 7777778877777652 22222333 34444455421000 1456778887 899999875 35
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 408 NIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 408 ~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.+|++++ +++++|++++++|+++++++
T Consensus 377 ~lRis~~--~~~~~i~~~~~~l~~~l~~~ 403 (406)
T 1xi9_A 377 HFRAVFL--PPIEILEEAMDRFEKFMKER 403 (406)
T ss_dssp BEEEECC--SCHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEec--CCHHHHHHHHHHHHHHHHHH
Confidence 7999976 89999999999999998764
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.1e-27 Score=230.36 Aligned_cols=339 Identities=10% Similarity=0.041 Sum_probs=218.8
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCC-cccccCcCCChHHHHHHHHHHHhcCc-CCC-CeEEEeCChhhH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP-FYHSFWNRTTKPSLDLAKELLEMFTA-SKM-AKVFFTNSGSEA 107 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~-~~v~~~~sGseA 107 (447)
.|++++||.++.. .+| .+|.+.+++.+++++.. ..+....+..+....+++.+.+.+.. .++ +++++++||++|
T Consensus 45 ~g~~~idl~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~a 121 (404)
T 2o1b_A 45 GPLPLINMAVGIP--DGP-TPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNG 121 (404)
T ss_dssp CSSCCEECCCCSC--SSC-CCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHH
T ss_pred CCCCEEecCCcCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHH
Confidence 4788999988763 567 68999999999885421 11111111223333344444333232 233 689999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC-cccCCCCCCChhHHH
Q 013204 108 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH-YWRYAHPGETEEEYS 186 (447)
Q Consensus 108 ~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 186 (447)
++.+++.+. .++++|++.+++||+........+ .... .++... .+. .+
T Consensus 122 l~~~~~~l~--------~~gd~Vl~~~p~y~~~~~~~~~~g-~~~~------------~v~~~~~~~~-----~d----- 170 (404)
T 2o1b_A 122 LVAVPTCVI--------NPGDYVLLPDPGYTDYLAGVLLAD-GKPV------------PLNLEPPHYL-----PD----- 170 (404)
T ss_dssp HHHHHHHHC--------CTTCEEEEEESCCSSHHHHHHHTT-CEEE------------EEECCTTTCC-----CC-----
T ss_pred HHHHHHHhc--------CCCCEEEEcCCCchhHHHHHHHCC-CEEE------------EeccCcccCc-----CC-----
Confidence 999999763 234789999999999876554322 2111 111110 000 00
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccccc-ccC---
Q 013204 187 TRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGC-DKY--- 262 (447)
Q Consensus 187 ~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~-~~~--- 262 (447)
+++|++.+. .++++|+++..++.+|.+ .+.+++++|.++|++||+++|+||+|+++.+.|..... ...
T Consensus 171 ---~~~l~~~l~----~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~ 242 (404)
T 2o1b_A 171 ---WSKVDSQII----DKTKLIYLTYPNNPTGST-ATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGK 242 (404)
T ss_dssp ---GGGSCHHHH----HHEEEEEECSSCTTTCCC-CCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHH
T ss_pred ---HHHHHHhhc----cCceEEEEcCCCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCC
Confidence 255666554 245667766556666654 57889999999999999999999999988655532111 111
Q ss_pred CCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHHHH
Q 013204 263 SIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQVNKI 340 (447)
Q Consensus 263 ~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~~~ 340 (447)
+....+.++||.++.+++++|++++++++++.+... ....+++.++++++++.++|+... -++..++++++
T Consensus 243 ~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 315 (404)
T 2o1b_A 243 DVAIEIYSLSKGYNMSGFRVGFAVGNKDMIQALKKY-------QTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTR 315 (404)
T ss_dssp HHEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHH-------HHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCEEEEEecchhccCchhheEeEecCHHHHHHHHHH-------HhhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 112334578999974338999999999998887632 222356778899988888887521 13345566677
Q ss_pred HHHHHHhHhhccCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEee-------CCEEEE
Q 013204 341 APKFQDGVKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVS-------GDNIMM 411 (447)
Q Consensus 341 ~~~l~~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------g~~iR~ 411 (447)
.+++.+.|+++ +.. ...+. |.++.+.+.... ....+.++|+ ++||++.++ .+.+|+
T Consensus 316 ~~~l~~~L~~~-g~~---~~~~~~g~~~~~~~~~~~-----------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi 380 (404)
T 2o1b_A 316 RDRFEAMLAKA-DLP---FVHAKGGIYVWLETPPGY-----------DSEQFEQFLVQEKSILVAPGKPFGENGNRYVRI 380 (404)
T ss_dssp HHHHHHHHHHT-TCC---EECCCBSSEEEEECCTTC-----------CHHHHHHHHHHHHCEECEESGGGCGGGTTEEEE
T ss_pred HHHHHHHHHhc-CCe---ecCCCcceEEEEeCCCCC-----------CHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEE
Confidence 77777777765 222 22333 445667765321 1345777877 579999875 357999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 412 SPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 412 ~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+++. ++++|++++++|++++++
T Consensus 381 s~~~--~~e~l~~~l~~l~~~l~~ 402 (404)
T 2o1b_A 381 SLAL--DDQKLDEAAIRLTELAYL 402 (404)
T ss_dssp ECCS--CTTHHHHHHHHHHGGGGG
T ss_pred EEcC--CHHHHHHHHHHHHHHHHh
Confidence 9764 889999999999988754
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.2e-27 Score=227.47 Aligned_cols=331 Identities=15% Similarity=0.100 Sum_probs=221.7
Q ss_pred EEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHH
Q 013204 34 KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVK 113 (447)
Q Consensus 34 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~ 113 (447)
.++||.++. ..++ .+|.+.+++.+++++. ..+. ......++.+.+++++. .+++++++++||++|++.+++
T Consensus 26 ~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~-~~y~----~~~~~~~l~~~la~~~~-~~~~~v~~~~g~~~a~~~~~~ 96 (381)
T 1v2d_A 26 GAVNLGQGF--PSNP-PPPFLLEAVRRALGRQ-DQYA----PPAGLPALREALAEEFA-VEPESVVVTSGATEALYVLLQ 96 (381)
T ss_dssp TCEECCCCS--CSSC-CCHHHHHHHHHHTTTS-CSCC----CTTCCHHHHHHHHHHHT-SCGGGEEEESSHHHHHHHHHH
T ss_pred CeEEecCCC--CCCC-CCHHHHHHHHHHHHHh-cCCC----CCCCCHHHHHHHHHhcC-CChhhEEEcCChHHHHHHHHH
Confidence 478998775 3456 6899999999988752 1111 22245678888888863 456689999999999999999
Q ss_pred HHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC---CcccCCCCCCChhHHHHHHH
Q 013204 114 LVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP---HYWRYAHPGETEEEYSTRLA 190 (447)
Q Consensus 114 ~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 190 (447)
.+. .++++|++.+++||+....... .|... ..++.+ +.+. .++
T Consensus 97 ~~~--------~~gd~Vl~~~~~~~~~~~~~~~-~g~~~------------~~v~~~~~~~~~~-------------~d~ 142 (381)
T 1v2d_A 97 SLV--------GPGDEVVVLEPFFDVYLPDAFL-AGAKA------------RLVRLDLTPEGFR-------------LDL 142 (381)
T ss_dssp HHC--------CTTCEEEEEESCCTTHHHHHHH-TTCEE------------EEEECEEETTEEE-------------CCH
T ss_pred HhC--------CCCCEEEEcCCCchhHHHHHHH-cCCEE------------EEEeCCCCCccCC-------------cCH
Confidence 773 3357899999999998654332 22211 111211 0000 013
Q ss_pred HHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccc-ccc-c-cCCCCCC
Q 013204 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTM-FGC-D-KYSIKPD 267 (447)
Q Consensus 191 ~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~-~~~-~-~~~~~~d 267 (447)
++|++.+. +++++|+++++++.+|.+ .+.+++++|.++|++||+++|+||+|+++.. |.. ... . ..+..++
T Consensus 143 ~~l~~~l~----~~~~~v~~~~~~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~~~~~~~~ 216 (381)
T 1v2d_A 143 SALEKALT----PRTRALLLNTPMNPTGLV-FGERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREFAPERTFT 216 (381)
T ss_dssp HHHHTTCC----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHHCTTTEEE
T ss_pred HHHHHhcC----cCCEEEEECCCCCCCCCc-cCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHhcCCCEEE
Confidence 66666553 356777777777777755 5678999999999999999999999998744 431 111 1 2344455
Q ss_pred eeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--h--hcHHHHHHHHHHH
Q 013204 268 LVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--E--RNIVEQVNKIAPK 343 (447)
Q Consensus 268 ~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~--~~~~~~~~~~~~~ 343 (447)
+.++||.++.+++|+|++++++++++.+... ....+++.++++++++.++|+... + ++..++++++.++
T Consensus 217 ~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~ 289 (381)
T 1v2d_A 217 VGSAGKRLEATGYRVGWIVGPKEFMPRLAGM-------RQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDL 289 (381)
T ss_dssp EEEHHHHTTCGGGCCEEEECCTTTHHHHHHH-------HHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred EeechhhcCCcccceEEEEeCHHHHHHHHHH-------HhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence 6678999874348999999999988877532 222356778888888888888552 1 3456677778888
Q ss_pred HHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee---------CCEEEEecC
Q 013204 344 FQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS---------GDNIMMSPP 414 (447)
Q Consensus 344 l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---------g~~iR~~~~ 414 (447)
+.+.|+++ +..+.. ...|.++.+.+... . +.+.+.++||++.++ .+.+|++++
T Consensus 290 l~~~L~~~-g~~~~~--~~~~~~~~~~~~~~--------------~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~ 351 (381)
T 1v2d_A 290 LAGGLRAM-GLRVYV--PEGTYFLMAELPGW--------------D-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFC 351 (381)
T ss_dssp HHHHHHHT-TCCEEC--CSBSSEEEEECTTC--------------C-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECC
T ss_pred HHHHHHHC-CCEecC--CCcceEEEEecChH--------------h-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeC
Confidence 88888774 332221 12245666655421 1 456678899999874 357999976
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 013204 415 FIMSPEEVDELISKYGKALKATEERV 440 (447)
Q Consensus 415 ~~~t~e~i~~~~~~l~~~l~~~~~~~ 440 (447)
. ++++|++++++|++++++.++..
T Consensus 352 ~--~~~~i~~~~~~l~~~l~~~r~~~ 375 (381)
T 1v2d_A 352 K--TEEELHLALERLGRVVNSPREAE 375 (381)
T ss_dssp S--CHHHHHHHHHHHHHHC-------
T ss_pred C--CHHHHHHHHHHHHHHHhhccccc
Confidence 4 99999999999999998876543
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=226.23 Aligned_cols=339 Identities=11% Similarity=0.078 Sum_probs=221.4
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCC----cccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChh
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP----FYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGS 105 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGs 105 (447)
+++.++||+++ .+....+|++.+++.+++.+.. ..+....+..+....+++.+.+.+. +.+++++++++||+
T Consensus 33 ~~~~~i~l~~~---~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~ 109 (398)
T 3ele_A 33 GKENVYDFSIG---NPSIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAA 109 (398)
T ss_dssp CGGGCEECCSC---CCCSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHH
T ss_pred CCCCeEEeecC---CCCCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHH
Confidence 35789999887 3333378999999999987632 1121112233445555666555543 24678999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC-cccCCCCCCChhH
Q 013204 106 EANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH-YWRYAHPGETEEE 184 (447)
Q Consensus 106 eA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 184 (447)
+|+..+++.+. ++++++|++.+++|++........+... ..++... .+. .
T Consensus 110 ~al~~~~~~l~-------~~g~d~vl~~~p~~~~~~~~~~~~g~~~-------------~~v~~~~~~~~-----~---- 160 (398)
T 3ele_A 110 ASLSICFRALT-------SDAYDEFITIAPYFPEYKVFVNAAGARL-------------VEVPADTEHFQ-----I---- 160 (398)
T ss_dssp HHHHHHHHHHC-------CSTTCEEEEESSCCTHHHHHHHHTTCEE-------------EEECCCTTTSS-----C----
T ss_pred HHHHHHHHHHc-------CCCCCEEEEeCCCchhhHHHHHHcCCEE-------------EEEecCCcCCc-----C----
Confidence 99999999773 1233789999999999865544332211 1111110 000 0
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHh------cCCEEEEehhhcCCCccccccc
Q 013204 185 YSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKK------YDILFIADEVICAFGRLGTMFG 258 (447)
Q Consensus 185 ~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~------~g~~li~DEv~~g~g~~g~~~~ 258 (447)
++++|++.+. +++++|+++..++.+|. ..+.+.+++|+++|++ ||+++|+||+|+++.+.|....
T Consensus 161 ----d~~~l~~~l~----~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~ 231 (398)
T 3ele_A 161 ----DFDALEERIN----AHTRGVIINSPNNPSGT-VYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVP 231 (398)
T ss_dssp ----CHHHHHHTCC----TTEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCC
T ss_pred ----CHHHHHHHhC----cCCCEEEEcCCCCCCCC-CCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcC
Confidence 1366776654 24666666555666665 4567789999999999 9999999999998876664322
Q ss_pred --cccCCCCCCeeeecccCCCcccceeEEEeChhHHH------HhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh
Q 013204 259 --CDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSE------VIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE 330 (447)
Q Consensus 259 --~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~ 330 (447)
...++....+.++||.++.+++++|++++++++++ .+... .....+++.+++++.++.+.++ .
T Consensus 232 ~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~---~ 302 (398)
T 3ele_A 232 FVTKYYDNTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGA------GRALGYVCAPSLFQKMIVKCQG---A 302 (398)
T ss_dssp CGGGTCSSEEEEEESTTTSSCTTTCCEEEECCTTSTTHHHHHHHHHHH------HHHTTCCCSCHHHHHHHTTCTT---C
T ss_pred ChHhhcCCeEEEEehhhcCCCccceeEEEEEcchhhhHHHHHHHHHHH------hhhccccCCCHHHHHHHHHHhc---C
Confidence 22333223344789999833389999999887432 22210 0112355666777776655554 3
Q ss_pred hcHHHHHHHHHHHHHHhHhhccCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC---
Q 013204 331 RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--- 406 (447)
Q Consensus 331 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g--- 406 (447)
.+..++++++.+++.+.|+++ +..+ ..+. |.++.+.+.... ...+.+.|.++||++.++.
T Consensus 303 ~~~~~~~~~~~~~l~~~L~~~-g~~~---~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~gi~v~~g~~~~ 366 (398)
T 3ele_A 303 TGDINAYKENRDLLYEGLTRI-GYHC---FKPDGAFYMFVKALEDD------------SNAFCEKAKEEDVLIVAADGFG 366 (398)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH-TCCE---ECCSBSSEEEEECSSSC------------HHHHHHHHHTTTEECEESGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCee---cCCCeeEEEEEEcCCCC------------HHHHHHHHHHCCEEEeCccccC
Confidence 345678888889999988876 2222 2233 344566654321 4567888999999998763
Q ss_pred --CEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 407 --DNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 407 --~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
+.+|+++ .+++++|++++++|++++++++
T Consensus 367 ~~~~iRis~--~~~~e~i~~~l~~l~~~l~~~~ 397 (398)
T 3ele_A 367 CPGWVRISY--CVDREMIKHSMPAFEKIYKKYN 397 (398)
T ss_dssp CTTEEEEEC--CSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEe--cCCHHHHHHHHHHHHHHHHHhh
Confidence 6799995 4899999999999999987753
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-26 Score=227.34 Aligned_cols=346 Identities=11% Similarity=0.082 Sum_probs=224.7
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCC---cccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP---FYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEAN 108 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~ 108 (447)
+..++||.++.... .++.++++.+++.+++++.. ..+....+..+....+++.+.+.+...+.+++++++||++|+
T Consensus 75 ~~~~i~l~~g~p~~-~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al 153 (448)
T 3aow_A 75 TSDIISLAGGLPNP-KTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQAL 153 (448)
T ss_dssp TSSSEECCCCCCCG-GGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHH
T ss_pred CCCcEeCCCCCCCc-hhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHH
Confidence 34689998886533 34678899999999886531 111111122333334444443332311568999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHH
Q 013204 109 DTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188 (447)
Q Consensus 109 ~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (447)
+.+++++. .+++.|++.+++|++........ |... ..++.... + .
T Consensus 154 ~~~~~~l~--------~~Gd~Vlv~~p~y~~~~~~~~~~-g~~~------------~~v~~~~~------g--------~ 198 (448)
T 3aow_A 154 DLIGRVFL--------NPGDIVVVEAPTYLAALQAFNFY-EPQY------------IQIPLDDE------G--------M 198 (448)
T ss_dssp HHHHHHHC--------CTTCEEEEEESCCHHHHHHHHTT-CCEE------------EEEEEETT------E--------E
T ss_pred HHHHHHHc--------CCCCEEEEeCCChHHHHHHHHHc-CCEE------------EEeccCCC------C--------C
Confidence 99999873 23478999999999986554432 2111 11111000 0 1
Q ss_pred HHHHHHHHHHhh--CCCcEEEEEE-ccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc----cccc
Q 013204 189 LANNLEDLILKE--GPETIAAFIA-EPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF----GCDK 261 (447)
Q Consensus 189 ~~~~le~~l~~~--~~~~~a~vi~-epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~----~~~~ 261 (447)
++++|++.+... ...++++|++ ...++.+|.+ .+.+.+++|.++|++||+++|+||+|+++.+.|... .++.
T Consensus 199 d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~-~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~ 277 (448)
T 3aow_A 199 KVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVT-MNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDN 277 (448)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCT
T ss_pred CHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCC-CCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCC
Confidence 147777777521 1125677644 4445556644 678999999999999999999999999886655421 1222
Q ss_pred CCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh----hhcHHHHH
Q 013204 262 YSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK----ERNIVEQV 337 (447)
Q Consensus 262 ~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~----~~~~~~~~ 337 (447)
.+...++.+|||.++.| +|+|++++++++++.+... ....+++.+++++.++.++|+... -++..+.+
T Consensus 278 ~~~vi~~~S~SK~~~~G-lriG~v~~~~~l~~~l~~~-------~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~ 349 (448)
T 3aow_A 278 EGRVIYLGTFSKILAPG-FRIGWMVGDPGIIRKMEIA-------KQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFY 349 (448)
T ss_dssp TSCEEEEEESTTTTCGG-GCCEEEEECHHHHHHHHHH-------HHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred CCCEEEEccchhhcccc-ccEEEEEeCHHHHHHHHHH-------HHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 22334566899999855 8999999999998887632 222355668888888888886421 12334555
Q ss_pred HHHHHHHHHhHhhc-cCCCceeeEe-eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee---------C
Q 013204 338 NKIAPKFQDGVKAF-SDSPIIGEIR-GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS---------G 406 (447)
Q Consensus 338 ~~~~~~l~~~L~~l-~~~~~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---------g 406 (447)
+++.+.+.+.|++. +. .+..+. ..|.++++.+.... ....+.++|+++||++.++ .
T Consensus 350 ~~~~~~l~~~L~~~~~~--g~~~~~p~~g~~~~v~~~~~~-----------~~~~l~~~l~~~gV~v~pg~~f~~~~~~~ 416 (448)
T 3aow_A 350 KPRRDAMLEALEEFMPE--GVKWTKPEGGMFIWVTLPDGI-----------DSKKMLERAIKKGVAYVPGEAFYAHRDVK 416 (448)
T ss_dssp HHHHHHHHHHHHHHCCT--TCEECCCSBSSEEEEECSTTC-----------CHHHHHHHHHHTTEECEEGGGGSTTCCCC
T ss_pred HHHHHHHHHHHHHhCCC--CeEEeCCCccEEEEEEcCCCC-----------CHHHHHHHHHHCCcEEEcchhhcCCCCCC
Confidence 56677777777653 21 122222 33667777775321 1456888999999999874 2
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 407 DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 407 ~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+.+|++++. .++++|++++++|++++++.
T Consensus 417 ~~iRls~~~-~~~e~i~~~~~~L~~~l~~~ 445 (448)
T 3aow_A 417 NTMRLNFTY-VDEDKIMEGIKRLAETIKEE 445 (448)
T ss_dssp SEEEEECSS-SCTHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCC-CCHHHHHHHHHHHHHHHHHH
Confidence 569999775 48999999999999998764
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-30 Score=252.19 Aligned_cols=353 Identities=10% Similarity=0.059 Sum_probs=225.2
Q ss_pred eEEEEecCcEEEeCCCC--EEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC---
Q 013204 17 LVIEKSEGSYVYDVNGK--KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT--- 91 (447)
Q Consensus 17 ~~~~~~~g~~~~d~dg~--~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--- 91 (447)
++-.+++|+++||.||+ .++||..+. ..++ .+|++.+++.+++.+....+. . ...++.+.+++++.
T Consensus 13 ~~~~~~~g~~~~d~~g~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~-----~-~~~~l~~~la~~l~~~~ 83 (392)
T 3b1d_A 13 APNRLSHHTYKWKETETDPQLLPAWIAD--MDFE-VMPEVKQAIHDYAEQLVYGYT-----Y-ASDELLQAVLDWEKSEH 83 (392)
Confidence 44567999999999999 999997764 3455 589999999998865322221 1 13344455544431
Q ss_pred c--CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCC
Q 013204 92 A--SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDC 169 (447)
Q Consensus 92 ~--~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (447)
+ .+.+++++++||++|++.+++.+. .++++|++.+++||+........+... ..++.
T Consensus 84 g~~~~~~~v~~~~g~~~a~~~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~-------------~~~~~ 142 (392)
T 3b1d_A 84 QYSFDKEDIVFVEGVVPAISIAIQAFT--------KEGEAVLINSPVYPPFARSVRLNNRKL-------------VSNSL 142 (392)
Confidence 1 356789999999999999999774 234789999999999865443322111 01111
Q ss_pred CCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcC
Q 013204 170 PHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA 249 (447)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g 249 (447)
.+. . ..+ ..+++++++.+.. .++++|+++..++.+|. .++.+++++|+++|++||+++|+||+|++
T Consensus 143 ~~~-------~--g~~-~~d~~~l~~~l~~---~~~~~v~~~~~~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~ 208 (392)
T 3b1d_A 143 KEE-------N--GLF-QIDFEQLENDIVE---NDVKLYLLCNPHNPGGR-VWEREVLEQIGHLCQKHHVILVSDEIHQD 208 (392)
Confidence 000 0 000 0124667766642 23456666666666665 45678899999999999999999999999
Q ss_pred CCcccccc----cccc--CCCCCCeeeecccCCCcccceeEEEeCh-hHHHHhhhccCCCCccCcCCCC-CCcHHHHHHH
Q 013204 250 FGRLGTMF----GCDK--YSIKPDLVSFAKALSSAYMPIGAILVSP-EVSEVIHSQSNTLGSFSHGFTY-SGHPVSCAVA 321 (447)
Q Consensus 250 ~g~~g~~~----~~~~--~~~~~d~v~~sK~l~gg~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~t~-~~~~~~~~aa 321 (447)
+++.|... .+.. .+..+++.++||.++.+++|+|++++++ ++++.+... ....++ +.++++++++
T Consensus 209 ~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~ 281 (392)
T 3b1d_A 209 LTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQ-------QLVNNHHEVSSLGYIAT 281 (392)
Confidence 87766321 1111 3334556789999983338999999875 488777531 222222 4578888888
Q ss_pred HHHHHHHhh--hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEE-EEeecCCCCCCCCCCCcchHHHHHHHHH-H
Q 013204 322 IEALKIYKE--RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILG-TEFADNKSPNEPFPPEWGIGAYFGAQCE-K 397 (447)
Q Consensus 322 ~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ 397 (447)
.++|+...+ ++..+.++++.+++.+.|++. .+.+..+.+.|.++. +++..... ....+.+.|+ +
T Consensus 282 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~i~~~~~~~----------~~~~l~~~l~~~ 349 (392)
T 3b1d_A 282 ETAYRYGKPWLVALKAVLEENIQFAVEYFAQE--APRLKVMKPQGTYLIWLDFSDYGL----------TDDALFTLLHDQ 349 (392)
Confidence 888873211 223344444555555555441 233334455666554 56643110 0234677786 7
Q ss_pred cCceEEee-------CCEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 398 HGMLVRVS-------GDNIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 398 ~Gi~~~~~-------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
+||++.++ .+.+|++ +..++++|++++++|+++++
T Consensus 350 ~gi~v~~g~~f~~~~~~~iRi~--~~~~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 350 AKVILNRGSDYGSEGELHARLN--IAAPKSLVEEICKRIVCCLP 391 (392)
Confidence 89999864 2469999 55678999999999998775
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-26 Score=227.42 Aligned_cols=346 Identities=11% Similarity=0.006 Sum_probs=227.4
Q ss_pred cEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCC-cccccCcCCChHHHHHHHHHHHhcC-----cCCCCeE
Q 013204 25 SYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP-FYHSFWNRTTKPSLDLAKELLEMFT-----ASKMAKV 98 (447)
Q Consensus 25 ~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~~v 98 (447)
..+.+.+|+.++||+++. ++++ .+|++.+++.+++.+.. ..+.. .....++.+.+++++. ....+++
T Consensus 36 ~~~~~~~g~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~----~~g~~~lr~~la~~~~~~~g~~~~~~~i 108 (437)
T 3g0t_A 36 TNLEKATGTKFCRMEMGV--PGLP-APQIGIETEIQKLREGVASIYPN----LDGLPELKQEASRFAKLFVNIDIPARAC 108 (437)
T ss_dssp HHHHHHHTCCCEECCCCS--CCSC-CCHHHHHHHHHHHHHTGGGSCCC----TTCCHHHHHHHHHHHHHHHCCCCCGGGE
T ss_pred HHHHHhcCCCEEeccCcC--CCCC-CCHHHHHHHHHHHhCCcCcCCCC----CCChHHHHHHHHHHHHHhhCCCCCcccE
Confidence 344556789999998886 3555 78999999999987522 22211 1112344455554442 1356799
Q ss_pred EEeCChhhHHHHHHHHHHHHHHhcCCCCcc--eEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCC
Q 013204 99 FFTNSGSEANDTQVKLVWYYNNALGRPNKK--KFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYA 176 (447)
Q Consensus 99 ~~~~sGseA~~~Al~~~~~~~~~~~~~~~~--~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (447)
++++||++|++.+++.+... ++ ++ +|++.+++|++........+.... .++..+
T Consensus 109 ~~t~g~t~al~~~~~~l~~~-----~~-gd~~~Vl~~~p~~~~~~~~~~~~g~~~~-------------~v~~~~----- 164 (437)
T 3g0t_A 109 VPTVGSMQGCFVSFLVANRT-----HK-NREYGTLFIDPGFNLNKLQCRILGQKFE-------------SFDLFE----- 164 (437)
T ss_dssp EEESHHHHHHHHHHHHHTTS-----CT-TCSCCEEEEESCCHHHHHHHHHHTCCCE-------------EEEGGG-----
T ss_pred EEeCCHHHHHHHHHHHHhcC-----CC-CCccEEEEeCCCcHhHHHHHHHcCCEEE-------------EEeecC-----
Confidence 99999999999999976300 13 35 799999999998655544332211 111100
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccc
Q 013204 177 HPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTM 256 (447)
Q Consensus 177 ~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~ 256 (447)
+.+ ..++++|++.+.. ++..+++++.| ++.+|. ..+.+.+++|+++|++||+++|+||+|+++...+..
T Consensus 165 ------~~~-~~d~~~l~~~l~~--~~~~~v~l~~p-~nptG~-~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~ 233 (437)
T 3g0t_A 165 ------YRG-EKLREKLESYLQT--GQFCSIIYSNP-NNPTWQ-CMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDY 233 (437)
T ss_dssp ------GCT-THHHHHHHHHHTT--TCCCEEEEESS-CTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCC
T ss_pred ------CCC-ccCHHHHHHHHhc--CCceEEEEeCC-CCCCCC-cCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCc
Confidence 000 1235778877732 22333445566 555554 457788999999999999999999999976544321
Q ss_pred cc-------ccc---CCCCCCeeeecccCCCcccceeEEEeChhHHH-H-----------------hhhccCCCCccCcC
Q 013204 257 FG-------CDK---YSIKPDLVSFAKALSSAYMPIGAILVSPEVSE-V-----------------IHSQSNTLGSFSHG 308 (447)
Q Consensus 257 ~~-------~~~---~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~-~-----------------~~~~~~~~~~~~~~ 308 (447)
.. ... .+....+.++||.++.+++++|++++++++++ . +. .....
T Consensus 234 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 306 (437)
T 3g0t_A 234 SHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSS-------SALYA 306 (437)
T ss_dssp CSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHT-------THHHH
T ss_pred CcccccchhhccCCCCCcEEEEEcCccCCCCccceeEEEEECHHHhhhhhhcccccccccchhHHHHH-------HHHhh
Confidence 11 111 11112234689999833389999999999888 6 43 12223
Q ss_pred CCCCCcHHHHHHHHHHHHHHh-----hhcHHHHHHHHHHHHHHhHhhccCCCceee------Ee-eeeeEEEEEeecCCC
Q 013204 309 FTYSGHPVSCAVAIEALKIYK-----ERNIVEQVNKIAPKFQDGVKAFSDSPIIGE------IR-GTGLILGTEFADNKS 376 (447)
Q Consensus 309 ~t~~~~~~~~~aa~a~l~~~~-----~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~------~~-~~g~~~~i~~~~~~~ 376 (447)
.+++.+++++.++.++|+... -++..++++++.+++++.|+++ ++... .+ ..+.++.+.+...
T Consensus 307 ~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~-- 381 (437)
T 3g0t_A 307 LSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDN---GFNIVYDKDGNEPLADGFYFTVGYKGM-- 381 (437)
T ss_dssp HHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT---TEEESSCEETTEECCSSSEEEEEETTC--
T ss_pred hcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc---CCEEeccccCCCCCceeEEEEEecCCC--
Confidence 466788999999998888654 3456677777888888888775 22111 13 4566667776511
Q ss_pred CCCCCCCCcchHHHHHHHHHHcCceEEeeC-------CEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 377 PNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-------DNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
....+.+.|+++||.+.++. +.+|++++. .++++|++++++|++++++
T Consensus 382 ----------~~~~l~~~L~~~gi~v~~~~~~~~~~~~~iRis~~~-~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 382 ----------DSSKLIEKFVRYGMCAITLKTTGSKRNEAMRICTSL-LPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp ----------CHHHHHHHHHHTTEECEESTTTTCCCTTCEEEECSS-SCGGGHHHHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHcCeEEeeccccCCCCCCEEEEEEec-CCHHHHHHHHHHHHHHHhc
Confidence 14568899999999999874 569999884 4999999999999987753
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-26 Score=221.75 Aligned_cols=326 Identities=14% Similarity=0.105 Sum_probs=218.8
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHH
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEAND 109 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~ 109 (447)
.+|+.++||+++. ++++ .+|++.+++.+++.+.... ....+.....++++++++++. .+.+++++++||++|++
T Consensus 23 ~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~--~~~y~~~~~~~lr~~la~~~g-~~~~~i~~t~g~~~al~ 96 (360)
T 3hdo_A 23 PDIASWIKLNTNE--NPYP-PSPEVVKAILEELGPDGAA--LRIYPSASSQKLREVAGELYG-FDPSWIIMANGSDEVLN 96 (360)
T ss_dssp SCCTTSEECSSCC--CSSC-CCHHHHHHHHHHHTTTCGG--GGSCCCSSCHHHHHHHHHHHT-CCGGGEEEESSHHHHHH
T ss_pred ccccceeeccCCC--CCCC-CCHHHHHHHHHHHhcccch--hhcCCCCchHHHHHHHHHHhC-cCcceEEEcCCHHHHHH
Confidence 5788999998875 4555 7899999999998763110 011122334688888888873 46779999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (447)
.+++.+. ..+++|++.+++|++........+.... .++..+.+.
T Consensus 97 ~~~~~l~--------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~-------------~v~~~~~~~--------------- 140 (360)
T 3hdo_A 97 NLIRAFA--------AEGEEIGYVHPSYSYYGTLAEVQGARVR-------------TFGLTGDFR--------------- 140 (360)
T ss_dssp HHHHHHC--------CTTCEEEEESSSCTHHHHHHHHHTCEEE-------------EECBCTTSS---------------
T ss_pred HHHHHHh--------CCCCEEEEcCCChHHHHHHHHHCCCEEE-------------EeeCCCCCC---------------
Confidence 9999763 2347899999999998655444332211 111111110
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV 269 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v 269 (447)
++++.....+ .+++++..++.+|.+.+ ++++.++|+++|+++|+||+|++|...+........+....+.
T Consensus 141 ---~~~l~~~~~~---~~v~i~~p~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~ 210 (360)
T 3hdo_A 141 ---IAGFPERYEG---KVFFLTTPNAPLGPSFP----LEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTR 210 (360)
T ss_dssp ---BTTCCSSBCS---SEEEEESSCTTTCCCCC----HHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEE
T ss_pred ---HHHHHhhcCC---CEEEEeCCCCCCCCCcC----HHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEe
Confidence 0111111112 25555555666777776 7889999999999999999999773322111112222223344
Q ss_pred eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHhH
Q 013204 270 SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVEQVNKIAPKFQDGV 348 (447)
Q Consensus 270 ~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~~~~~~~~~l~~~L 348 (447)
++||.++.+++++|++++++++++.+... ..+++.++++++++.++|+..+ -++..++++++.+++.+.|
T Consensus 211 s~sK~~g~~G~r~G~~~~~~~~~~~~~~~---------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L 281 (360)
T 3hdo_A 211 TLSKSYSLAGMRIGLAIARPEVIAALDKI---------RDHYNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTEL 281 (360)
T ss_dssp ESTTTTSCTTSCCEEEECCHHHHHHHHHH---------SCSCCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHhhcCCccceeeEeeCHHHHHHHHHh---------CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999874448999999999999988642 1346788999999888887422 1345566677777777777
Q ss_pred hhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-----CEEEEecCCCCCHHHHH
Q 013204 349 KAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-----DNIMMSPPFIMSPEEVD 423 (447)
Q Consensus 349 ~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-----~~iR~~~~~~~t~e~i~ 423 (447)
+++ ++ ....+.|.++.+.+... ....+.+.|.++||++.+++ +.+|++. .++++++
T Consensus 282 ~~~---~~-~~~~~~~~~~~~~~~~~------------~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~---~~~~e~~ 342 (360)
T 3hdo_A 282 RSI---GY-DVIPSQGNYLFATPPDR------------DGKRVYDGLYARKVLVRHFSDPLLAHGMRISI---GTREEME 342 (360)
T ss_dssp HHT---TC-EECCCSSSEEEEECTTC------------CHHHHHHHHHHTTEECBCCCSTTTTTSEEEEC---CCHHHHH
T ss_pred HHC---CC-EEcCCCccEEEEECCCC------------CHHHHHHHHHHCCEEEEECCCCCCCCEEEEEc---CCHHHHH
Confidence 765 22 22355667766655421 14568889999999998764 5799994 3999999
Q ss_pred HHHHHHHHHHHH
Q 013204 424 ELISKYGKALKA 435 (447)
Q Consensus 424 ~~~~~l~~~l~~ 435 (447)
+++++|+++.+.
T Consensus 343 ~l~~al~~~~~~ 354 (360)
T 3hdo_A 343 QTLAALKEIGEG 354 (360)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHhcc
Confidence 999999877643
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-25 Score=216.10 Aligned_cols=324 Identities=14% Similarity=0.117 Sum_probs=217.4
Q ss_pred EecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhc-----CcCCCCeEEEeCChhhHHHH
Q 013204 36 LDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMF-----TASKMAKVFFTNSGSEANDT 110 (447)
Q Consensus 36 lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~~~~~~v~~~~sGseA~~~ 110 (447)
+||.++. +++| .+|++.+++.+++.+.... ....+.....++.+.+++++ .+.+.+++++++|+++|++.
T Consensus 33 idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~~--~~~y~~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~ 107 (369)
T 3cq5_A 33 IRLNTNE--NPYP-PSEALVADLVATVDKIATE--LNRYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQ 107 (369)
T ss_dssp EECSSCC--CCSC-CCHHHHHHHHHHHHHHGGG--TTSCCCTTCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHH
T ss_pred eeccCCC--CCCC-CCHHHHHHHHHHHHhcccc--cccCCCccHHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHH
Confidence 8998775 3577 7899999999988652100 00111111245666666652 13356789999999999999
Q ss_pred HHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHH
Q 013204 111 QVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190 (447)
Q Consensus 111 Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (447)
+++.+. .++++|++.+++||+........+. .. ..++..+.+. . ++
T Consensus 108 ~~~~l~--------~~gd~Vl~~~~~y~~~~~~~~~~g~-~~------------~~v~~~~~~~-----~--------d~ 153 (369)
T 3cq5_A 108 LLQAFG--------GPGRTALGFQPSYSMHPILAKGTHT-EF------------IAVSRGADFR-----I--------DM 153 (369)
T ss_dssp HHHHHC--------STTCEEEEEESSCTHHHHHHHHTTC-EE------------EEEECCTTSS-----C--------CH
T ss_pred HHHHhc--------CCCCEEEEcCCChHHHHHHHHHcCC-EE------------EEecCCcCCC-----C--------CH
Confidence 998763 2347899999999998655443322 11 1111111000 0 13
Q ss_pred HHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccccc-ccCC-CCCCe
Q 013204 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGC-DKYS-IKPDL 268 (447)
Q Consensus 191 ~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~-~~~~-~~~d~ 268 (447)
+++++.+... ++++|+++++++.+|.+.+ ++++.++|+.+++++|+||+|+++++....... +.++ ....+
T Consensus 154 ~~l~~~i~~~---~~~~v~~~~~~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~ 226 (369)
T 3cq5_A 154 DVALEEIRAK---QPDIVFVTTPNNPTGDVTS----LDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVS 226 (369)
T ss_dssp HHHHHHHHHH---CCSEEEEESSCTTTCCCCC----HHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEE
T ss_pred HHHHHHhhcc---CCCEEEEeCCCCCCCCCCC----HHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEE
Confidence 7777777632 3457777888888887766 678888888888999999999987643211111 2222 22345
Q ss_pred eeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHh
Q 013204 269 VSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVEQVNKIAPKFQDG 347 (447)
Q Consensus 269 v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~~~~~~~~~l~~~ 347 (447)
.++||.++.+++|+|++++++++++.+... ..+++.++++++++.++++..+ -++..++++++.+++.+.
T Consensus 227 ~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~---------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 297 (369)
T 3cq5_A 227 RTMSKAFDFAGGRLGYFVANPAFIDAVMLV---------RLPYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAAR 297 (369)
T ss_dssp EESSSTTSCGGGCCEEEEECTHHHHHHHTT---------SCTTCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHH
T ss_pred EechHhcCCcccceEEEEeCHHHHHHHHHc---------CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 578999984348999999999998888632 1245688999998888887432 134567777788888888
Q ss_pred HhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee--CCEEEEecCCCCCHHHHHHH
Q 013204 348 VKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS--GDNIMMSPPFIMSPEEVDEL 425 (447)
Q Consensus 348 L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--g~~iR~~~~~~~t~e~i~~~ 425 (447)
|++. .. ...++.|.++.+.+.. ....+.+.|.++||.+.++ .+.+|++++ ++++++++
T Consensus 298 L~~~-g~---~~~~~~~~~~~~~~~~-------------~~~~l~~~l~~~gi~v~~~~~~~~iRis~~---~~~~i~~~ 357 (369)
T 3cq5_A 298 LEEL-GY---AVVPSESNFVFFGDFS-------------DQHAAWQAFLDRGVLIRDVGIAGHLRTTIG---VPEENDAF 357 (369)
T ss_dssp HHHH-TC---EEECCSSSEEEEECCS-------------SHHHHHHHHHHTTEECBCCSCTTEEEEECC---CHHHHHHH
T ss_pred HHhC-CC---EECCCCCeEEEEECCC-------------CHHHHHHHHHHCCEEEEECCCCCeEEEEeC---CHHHHHHH
Confidence 8764 22 2234566777776541 1445788899999999886 367999965 89999999
Q ss_pred HHHHHHHHH
Q 013204 426 ISKYGKALK 434 (447)
Q Consensus 426 ~~~l~~~l~ 434 (447)
+++|+++++
T Consensus 358 ~~~l~~~~~ 366 (369)
T 3cq5_A 358 LDAAAEIIK 366 (369)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999988763
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=228.73 Aligned_cols=346 Identities=10% Similarity=0.073 Sum_probs=221.8
Q ss_pred CEEEecCCccccccCCCCCHHH--HHHHHHHHhc-CCcccccCcCCChHHHHHHHHHHHhc----CcCCCCe---EEEeC
Q 013204 33 KKYLDSLAGLWCTALGGSEPRL--VAAATAQLNT-LPFYHSFWNRTTKPSLDLAKELLEMF----TASKMAK---VFFTN 102 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v--~~a~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~---v~~~~ 102 (447)
+.++||.++... .+|. +|.+ .+++.+++.. ....+. +.....++.+.+++++ .+.++++ +++++
T Consensus 47 ~~~i~l~~g~~~-~~~~-~~~~~~~~a~~~~~~~~~~~~y~----~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~ 120 (430)
T 2x5f_A 47 STTYNATIGMAT-NKDG-KMFASSLDAMFNDLTPDEIFPYA----PPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTN 120 (430)
T ss_dssp TCSEECCCSSCE-ETTE-ECCCHHHHTTBSSCCGGGTSSCC----CTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEES
T ss_pred CCcEEeeeeecc-CCCC-chhhHHHHHHHHhcCcccccccC----CCCCCHHHHHHHHHHHhccCcccCCCccceEEEcC
Confidence 568999888643 5774 6666 7776665543 111111 1112345555555554 1335567 99999
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC-cccCCCCCCC
Q 013204 103 SGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH-YWRYAHPGET 181 (447)
Q Consensus 103 sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 181 (447)
||++|++.+++.+. .++++|++.+++||+.........|... ..++... .+. .
T Consensus 121 g~~~al~~~~~~l~--------~~gd~Vl~~~p~y~~~~~~~~~~~g~~~------------~~~~~~~~~~~-----~- 174 (430)
T 2x5f_A 121 ALTHGLSLVGDLFV--------NQDDTILLPEHNWGNYKLVFNTRNGANL------------QTYPIFDKDGH-----Y- 174 (430)
T ss_dssp HHHHHHHHHHHHHC--------CTTCEEEEESSCCTHHHHHHTTTTCCEE------------EEECCBCTTSC-----B-
T ss_pred CchHHHHHHHHHHh--------CCCCEEEEcCCcCccHHHHHHHhcCCeE------------EEEeccCccCC-----c-
Confidence 99999999999763 2347899999999998655443022211 1111110 000 0
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHh-----cCCEEEEehhhcCCCccccc
Q 013204 182 EEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKK-----YDILFIADEVICAFGRLGTM 256 (447)
Q Consensus 182 ~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~-----~g~~li~DEv~~g~g~~g~~ 256 (447)
+++++++.+....++..++++++| ++.+|. .++.+++++|.++|++ ||+++|+||+|+++.+.|..
T Consensus 175 -------d~~~l~~~l~~~~~~~~~v~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~ 245 (430)
T 2x5f_A 175 -------TTDSLVEALQSYNKDKVIMILNYP-NNPTGY-TPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVY 245 (430)
T ss_dssp -------CSHHHHHHHHHCCSSEEEEEECSS-CTTTCC-CCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSC
T ss_pred -------CHHHHHHHHHhcCCCCEEEEEcCC-CCCCCC-cCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCccc
Confidence 127788887653323334455666 555564 5678999999999999 99999999999988666542
Q ss_pred c-cc--ccCCCCCC------eeeecccCCCcccceeEEEe---ChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHH
Q 013204 257 F-GC--DKYSIKPD------LVSFAKALSSAYMPIGAILV---SPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEA 324 (447)
Q Consensus 257 ~-~~--~~~~~~~d------~v~~sK~l~gg~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~ 324 (447)
+ .. ...+..++ +.++||.++.+++|+|++++ ++++++.+..... ...+..+++.++++++++.++
T Consensus 246 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~a~~~~ 322 (430)
T 2x5f_A 246 TQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVK---GLIRSNISSGPLPTQSAVKHV 322 (430)
T ss_dssp CSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHH---HHHHTTTSSCCHHHHHHHHHH
T ss_pred chHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHh---hhhhcccCCCChHHHHHHHHH
Confidence 1 11 22233344 33678999744489999999 9999888763210 011124677899999998888
Q ss_pred HH-H---Hhh-hcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHH
Q 013204 325 LK-I---YKE-RNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEK 397 (447)
Q Consensus 325 l~-~---~~~-~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 397 (447)
|+ . .+. ++..++++++.+++.+.|++. ...+ +....+. |.++.+.+. .. ....+.+.|++
T Consensus 323 l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g-~~~~~~~~g~~~~~~~~-~~-----------~~~~~~~~l~~ 389 (430)
T 2x5f_A 323 LKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSH-WQAYDFNSGYFMAIKVH-DV-----------DPEALRKHLID 389 (430)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTT-EEECCCCBSSEEEEEES-SS-----------CHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-ceeeCCCceEEEEeCCC-CC-----------CHHHHHHHHHH
Confidence 87 3 221 225566666777777777632 1222 2223334 445677775 11 14468888887
Q ss_pred -cCceEEee-CCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 398 -HGMLVRVS-GDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 398 -~Gi~~~~~-g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+||++.++ .+.+|++++. .++++|++++++|+++++++
T Consensus 390 ~~gi~v~~g~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~ 429 (430)
T 2x5f_A 390 KYSIGVIALNATDIRIAFSC-VEKDDIPHVFDSIAKAIDDL 429 (430)
T ss_dssp HHCEECEECSSSEEEEEGGG-SCGGGHHHHHHHHHHHHHHH
T ss_pred hCCEEEecCCCCeEEEEEec-CCHHHHHHHHHHHHHHHHhc
Confidence 99999986 3679999875 59999999999999998764
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-26 Score=224.87 Aligned_cols=342 Identities=13% Similarity=0.061 Sum_probs=219.0
Q ss_pred EEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCC-eEEEeCChhhHHHHH
Q 013204 34 KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMA-KVFFTNSGSEANDTQ 111 (447)
Q Consensus 34 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~-~v~~~~sGseA~~~A 111 (447)
.++||.++. ..++ .+|.+.+++.+++++....+....+..+....+++.+.+.+. +.+.+ ++++++||++|++.+
T Consensus 26 ~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~ 102 (411)
T 2o0r_A 26 GAVNLGQGF--PDED-GPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAA 102 (411)
T ss_dssp TCEESSCSS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHH
T ss_pred CeeeccCcC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHH
Confidence 479998775 3566 689999999999876312222111223344445555544432 13456 899999999999999
Q ss_pred HHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC---cccCCCCCCChhHHHHH
Q 013204 112 VKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH---YWRYAHPGETEEEYSTR 188 (447)
Q Consensus 112 l~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 188 (447)
++.+. .++++|++.+++||+....... .|... ..++... .+. .
T Consensus 103 ~~~~~--------~~gd~Vl~~~~~y~~~~~~~~~-~g~~~------------~~v~~~~~~~~~~-------------~ 148 (411)
T 2o0r_A 103 VLGLV--------EPGSEVLLIEPFYDSYSPVVAM-AGAHR------------VTVPLVPDGRGFA-------------L 148 (411)
T ss_dssp HHHHC--------CTTCEEEEEESCCTTHHHHHHH-TTCEE------------EEEECEEETTEEE-------------C
T ss_pred HHHhc--------CCCCEEEEeCCCcHhHHHHHHH-cCCEE------------EEeeccccccCCC-------------C
Confidence 99763 2347899999999997654432 22211 1111110 000 0
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccc-cccccC----C
Q 013204 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTM-FGCDKY----S 263 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~-~~~~~~----~ 263 (447)
++++|++.+. +++++|+++++++.+|.+ ++.+++++|.++|++||+++|+||+|+++.+.|.. .....+ +
T Consensus 149 d~~~l~~~l~----~~~~~v~l~~~~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 223 (411)
T 2o0r_A 149 DADALRRAVT----PRTRALIINSPHNPTGAV-LSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAE 223 (411)
T ss_dssp CHHHHHHHCC----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGG
T ss_pred CHHHHHHhhc----cCceEEEEeCCCCCCCCC-CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCC
Confidence 1367777664 356677777777777754 56889999999999999999999999988766532 122211 2
Q ss_pred CCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHHHHH
Q 013204 264 IKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQVNKIA 341 (447)
Q Consensus 264 ~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~~~~ 341 (447)
....+.++||.++.+++|+|++++++++++.+... ....+++.++++++++.++|+... -++..++++++.
T Consensus 224 ~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 296 (411)
T 2o0r_A 224 RTITISSAAKMFNCTGWKIGWACGPAELIAGVRAA-------KQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARR 296 (411)
T ss_dssp GEEEEEEHHHHTTCTTTCEEEEECCHHHHHHHHHH-------HHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CEEEEeechhhcCCccceEEEEeeCHHHHHHHHHH-------HhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 22334468999984338999999999998877532 122345566777777777776431 134556777777
Q ss_pred HHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEee---------------
Q 013204 342 PKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVS--------------- 405 (447)
Q Consensus 342 ~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~--------------- 405 (447)
+++.+.|+++ +..+. ....|.++.+.+...... ....+.++|+ ++||++.++
T Consensus 297 ~~l~~~L~~~-g~~~~--~~~~g~~~~~~~~~~~~~---------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~ 364 (411)
T 2o0r_A 297 DRLAAGLTEI-GFAVH--DSYGTYFLCADPRPLGYD---------DSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQA 364 (411)
T ss_dssp HHHHHHHHHH-TCEEC--CCCBSSEEEEECGGGTCC---------CHHHHHHHHHHHHSEECEEGGGGSCCC--------
T ss_pred HHHHHHHHHc-CCEec--CCCeeEEEEEecCCCCCC---------CHHHHHHHHHHhCCEEEcChhhhCCCccccccccc
Confidence 8888888765 22211 122355677777542100 1345777776 679998763
Q ss_pred ---CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 406 ---GDNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 406 ---g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
.+.+|+++. .++++|++++++|++++++.+.
T Consensus 365 ~~~~~~iRis~~--~~~e~i~~~~~~l~~~~~~~~~ 398 (411)
T 2o0r_A 365 DVWNHLVRFTFC--KRDDTLDEAIRRLSVLAERPAT 398 (411)
T ss_dssp CCGGGCEEEECC--SCHHHHHHHHHHHGGGGC----
T ss_pred cCCCCeEEEEec--CCHHHHHHHHHHHHHHHhccCc
Confidence 135999964 5999999999999998876554
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-26 Score=222.16 Aligned_cols=319 Identities=17% Similarity=0.143 Sum_probs=213.3
Q ss_pred HHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcC
Q 013204 56 AAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQK 135 (447)
Q Consensus 56 ~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~ 135 (447)
+++.+++......+ ++.....++.+.+++++...+++++++++||++|++.+++.+. .++++|++.++
T Consensus 46 ~~~~~~~~~~~~~y----~~~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~--------~~gd~Vl~~~~ 113 (375)
T 3op7_A 46 EDFYKKLQGTKLNY----GWIEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLI--------EPGDHVISLYP 113 (375)
T ss_dssp HHHHHHHHTSCCSS----CCTTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEES
T ss_pred HHHHHHHhcCCcCC----CCCCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhc--------CCCCEEEEeCC
Confidence 45555554433222 1333456888899988754567899999999999999999763 34578999999
Q ss_pred CCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccC
Q 013204 136 SYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIG 215 (447)
Q Consensus 136 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~ 215 (447)
+|++........+.... .++.+....+ ..++++|++.+. +++++|+++++++
T Consensus 114 ~~~~~~~~~~~~g~~~~-------------~v~~~~~~~~-----------~~d~~~l~~~l~----~~~~~v~~~~~~n 165 (375)
T 3op7_A 114 TYQQLYDIPKSLGAEVD-------------LWQIEEENGW-----------LPDLEKLRQLIR----PTTKMICINNANN 165 (375)
T ss_dssp SCTHHHHHHHHTTCEEE-------------EEEEEGGGTT-----------EECHHHHHHHCC----TTCCEEEEESSCT
T ss_pred CchhHHHHHHHcCCEEE-------------EEeccccCCC-----------CCCHHHHHHhhc----cCCeEEEEcCCCC
Confidence 99997655443222111 1111000000 001367777664 3566778888877
Q ss_pred CCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHh
Q 013204 216 AGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVI 295 (447)
Q Consensus 216 ~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~ 295 (447)
.+|. ..+.+++++|.++|++||+++|+||+|+++++.+.....+.++..+++.++||.++.+++++|++++++++++.+
T Consensus 166 ptG~-~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~~~ 244 (375)
T 3op7_A 166 PTGA-VMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDIL 244 (375)
T ss_dssp TTCC-CCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEEEEEESSSSSSCGGGCCEEEECCHHHHHHH
T ss_pred CCCC-CCCHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEEEEeEChhhcCCcccceEEEEeCHHHHHHH
Confidence 7775 457888999999999999999999999988665333333445555667789999984448999999999999988
Q ss_pred hhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeee-eEEEEEee
Q 013204 296 HSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE--RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTG-LILGTEFA 372 (447)
Q Consensus 296 ~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g-~~~~i~~~ 372 (447)
.. .....+++.++++++++.++++..+. ++..+.++++.+.+++.|++. +.+..+...+ .+..+.+.
T Consensus 245 ~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~ 314 (375)
T 3op7_A 245 RD-------YRDYTMICAGVFDDLVAQLALAHYQEILERNRHILEENLAILDQWIEEE---PLVSYIRPAVVSTSFVKIA 314 (375)
T ss_dssp TT-------TGGGTTSCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHC---TTEEECCCSSSSCEEEEEC
T ss_pred HH-------HHhhhccCCCcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhC---CCceEecCCCeEEEeEEcC
Confidence 63 23445677788988888888874321 233444556666666666653 3333333333 34445554
Q ss_pred cCCCCCCCCCCCcchHHHHHHHH-HHcCceEEeeC-----CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 373 DNKSPNEPFPPEWGIGAYFGAQC-EKHGMLVRVSG-----DNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~g-----~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
... ....+.+.+ .++||.+.++. +.+|++ +..++++|++++++|+++++++++
T Consensus 315 ~~~-----------~~~~~~~~ll~~~gi~v~~g~~~~~~~~iRi~--~~~~~~~i~~~l~~l~~~l~~~~~ 373 (375)
T 3op7_A 315 VDM-----------PMEDFCLQLLQEHGVLLVPGNRFERDGYVRLG--FACEQETLIKGLEKLSQFLRRFDK 373 (375)
T ss_dssp CSS-----------CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEC--CCSCHHHHHHHHHHHHHHHGGGC-
T ss_pred CCC-----------CHHHHHHHHHHhCCEEEeChhhhCCCCeEEEE--ecCCHHHHHHHHHHHHHHHHHHhh
Confidence 321 134566776 58899998763 679999 566779999999999999876543
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=229.40 Aligned_cols=346 Identities=10% Similarity=0.036 Sum_probs=220.9
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccC-cCCChHHHHHHHHHHHhcC---cCCCCeEEEeCChh
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFW-NRTTKPSLDLAKELLEMFT---ASKMAKVFFTNSGS 105 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~---~~~~~~v~~~~sGs 105 (447)
.+|++++||.++. ..+. .+|+|.+++.+++.+........ ..+.....++.+.+++++. +...++++|++|++
T Consensus 66 ~~~~~~i~l~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~ 142 (449)
T 3qgu_A 66 NPDAKIISLGIGD--TTEP-LPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGSK 142 (449)
T ss_dssp CTTCCCEECSSCC--CCCC-CCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHH
T ss_pred CCCCCEEEeeCCC--CCCC-CCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHH
Confidence 4688999998874 4444 68999999999987532111111 1122345677777777752 34667999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHH
Q 013204 106 EANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEY 185 (447)
Q Consensus 106 eA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (447)
+++..+ ..+. .+++.|++.+++|++........+........ ....+..+++.+...+.
T Consensus 143 ~al~~~-~~l~--------~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~---~~~~~~~~~~~~~~~~~--------- 201 (449)
T 3qgu_A 143 CDIARI-QMMF--------GSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGT---GFDGIEYMVCNPDNHFF--------- 201 (449)
T ss_dssp HHHHHH-HHHH--------CSSSCEEEEESCCTHHHHHHHHHTCSCCBCSS---SBTTEEEEECCGGGTTC---------
T ss_pred HHHHHH-HHHh--------CCCCEEEEcCCCChhHHHHHHHcCCccccccc---ccceeEEEecccccCCc---------
Confidence 999988 4332 34578999999999987655543322100000 00011222221110000
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc-ccccccCC-
Q 013204 186 STRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT-MFGCDKYS- 263 (447)
Q Consensus 186 ~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~-~~~~~~~~- 263 (447)
.++++ . + ++++|+++..++.+|. .++.+.+++|+++|++||+++|+||+|++|++.|. ...+..+.
T Consensus 202 -----~~~~~----~-~-~~~~v~l~~p~NPtG~-~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~ 269 (449)
T 3qgu_A 202 -----PDLSK----A-K-RTDIIFFCSPNNPTGA-AATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPG 269 (449)
T ss_dssp -----CCGGG----C-C-CCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTT
T ss_pred -----CChhH----c-C-CCCEEEEeCCCCCCCC-cCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccC
Confidence 11111 1 2 3445555555666664 55788999999999999999999999998877653 22222221
Q ss_pred ---CCCCeeeecccCCCcccceeEEEeChhHHH--------HhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh---
Q 013204 264 ---IKPDLVSFAKALSSAYMPIGAILVSPEVSE--------VIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--- 329 (447)
Q Consensus 264 ---~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~--------~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--- 329 (447)
....+.++||.++.+++|+|++++++++++ .+.. .....+++.+++++.++.++++...
T Consensus 270 ~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~~~~l~~~~~~~ 342 (449)
T 3qgu_A 270 ADEVAIETCSFSKYAGFTGVRLGWTVVPKALKYANGEPVHADWNR-------VMTTCFNGASNIVQAGGLACLQPEGLKE 342 (449)
T ss_dssp GGGTEEEEEECSGGGTCTTCCCEEEECCTTCBCTTSCBHHHHHHH-------HHHHSCCCCCHHHHHHHHHHTSHHHHHH
T ss_pred CCCcEEEEecchhhcCCccceeEEEecCHHHHhhhhhhHHHHHHH-------HhhcccCCCCHHHHHHHHHHHhhcCHHH
Confidence 223355799999833389999999988765 2221 1122345678899998888876421
Q ss_pred hhcHHHHHHHHHHHHHHhHhhccCCCceeeEee-eeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc-CceEEee--
Q 013204 330 ERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRG-TGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH-GMLVRVS-- 405 (447)
Q Consensus 330 ~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~-- 405 (447)
.++..++++++.+++++.|+++ +..+ ..+ .|.++.+.+. .. ....+.+.|+++ ||++.++
T Consensus 343 ~~~~~~~~~~~~~~l~~~L~~~-g~~~---~~~~~~~~~~~~~~-~~-----------~~~~~~~~l~~~~gI~v~pg~~ 406 (449)
T 3qgu_A 343 MNAMIKFYKENAQILKTTFTEM-GFSV---YGGDDAPYIWVGFP-GK-----------PSWDVFAEILERCNIVTTPGSG 406 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCCE---EESSSSSEEEEECT-TS-----------CHHHHHHHHHHHHCEECEEGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCee---eCCCCeeEEEEECC-CC-----------CHHHHHHHHHHHCCEEEecchH
Confidence 2456677788888888888776 2222 223 3566667665 11 144577777775 9999875
Q ss_pred -----CCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 406 -----GDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 406 -----g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.+.+||+ +..++++|++++++|++++++-
T Consensus 407 f~~~~~~~iRis--~~~~~e~i~~~l~~l~~~~~~~ 440 (449)
T 3qgu_A 407 YGPAGEGFVRAS--AFGSRENILEAVRRFKEAYGKR 440 (449)
T ss_dssp GCGGGTTEEEEE--CCSCHHHHHHHHHHHHHHHC--
T ss_pred hCCCCCCeEEEE--ecCCHHHHHHHHHHHHHHHHhc
Confidence 2679999 6779999999999999988653
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-25 Score=218.85 Aligned_cols=336 Identities=11% Similarity=0.031 Sum_probs=216.9
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCC-eEEEeCChhhHHHH
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMA-KVFFTNSGSEANDT 110 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~-~v~~~~sGseA~~~ 110 (447)
..++||.++.. .++ .+|.+.+++.+++++....+....+..+....+++.+.+.+. +.+.+ ++++++||++|++.
T Consensus 30 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~ 106 (386)
T 1u08_A 30 HQAINLSQGFP--DFD-GPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYA 106 (386)
T ss_dssp TTCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHH
T ss_pred CCeEEecCCCC--CCC-CCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHH
Confidence 35899987753 466 689999999999875222222111233344444555444333 23566 89999999999999
Q ss_pred HHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC-cccCCCCCCChhHHHHHH
Q 013204 111 QVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH-YWRYAHPGETEEEYSTRL 189 (447)
Q Consensus 111 Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 189 (447)
+++.+. .++++|++.++.||+........ |... ..++... .+. . +
T Consensus 107 ~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~-g~~~------------~~v~~~~~~~~-----~--------d 152 (386)
T 1u08_A 107 AITALV--------RNGDEVICFDPSYDSYAPAIALS-GGIV------------KRMALQPPHFR-----V--------D 152 (386)
T ss_dssp HHHHHC--------CTTCEEEEEESCCTTHHHHHHHT-TCEE------------EEEECCTTTCC-----C--------C
T ss_pred HHHHhC--------CCCCEEEEeCCCchhHHHHHHHc-CCEE------------EEeecCcccCc-----C--------C
Confidence 999763 23478999999999876544332 2211 1111110 000 0 1
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-cc-c---cCCC
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-GC-D---KYSI 264 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~~-~---~~~~ 264 (447)
+++|++.+. +++++|++++.++.+|.+ .+.+.+++|.++|++||+++|+||+|+++.+.|... .+ . ..+.
T Consensus 153 ~~~l~~~l~----~~~~~v~l~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~ 227 (386)
T 1u08_A 153 WQEFAALLS----ERTRLVILNTPHNPSATV-WQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRER 227 (386)
T ss_dssp HHHHHHHCC----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTT
T ss_pred HHHHHHhhc----ccCEEEEEeCCCCCCCcc-CCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCc
Confidence 366777663 356677777667677754 567899999999999999999999999886655421 11 1 1233
Q ss_pred CCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHHHHHH
Q 013204 265 KPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQVNKIAP 342 (447)
Q Consensus 265 ~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~~~~~ 342 (447)
...+.++||.++.+++|+|++++++++++.+... ....+++.++++++++.++|+... -++..++++++.+
T Consensus 228 ~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 300 (386)
T 1u08_A 228 AVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKV-------HQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRD 300 (386)
T ss_dssp EEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHHH-------HHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHH
T ss_pred EEEEecchhhcCCcccceEEEEcCHHHHHHHHHH-------HHhhccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 3345578999984338999999999998887632 222356778888888888887431 1345566667777
Q ss_pred HHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEee---------CCEEEEe
Q 013204 343 KFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVS---------GDNIMMS 412 (447)
Q Consensus 343 ~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~---------g~~iR~~ 412 (447)
++.+.|+++ ++.......|.++.+.+...... ....+.+.|+ ++||++.++ .+.+|++
T Consensus 301 ~l~~~L~~~---g~~~~~~~~g~~~~~~~~~~~~~---------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis 368 (386)
T 1u08_A 301 ILVNALNES---RLEILPCEGTYFLLVDYSAVSTL---------DDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLC 368 (386)
T ss_dssp HHHHHTTSS---SCEECCCCBSSEEEEECTTTCCS---------CHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEE
T ss_pred HHHHHHHHC---CCeecCCCceEEEEEecCCCCCC---------CHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEE
Confidence 777777654 22111122255677776532100 1345777776 689999864 2469999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 013204 413 PPFIMSPEEVDELISKYGK 431 (447)
Q Consensus 413 ~~~~~t~e~i~~~~~~l~~ 431 (447)
++ .++++|++++++|++
T Consensus 369 ~~--~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 369 FA--KKESTLLAAAERLRQ 385 (386)
T ss_dssp CC--SCHHHHHHHHHHHTT
T ss_pred Ec--CCHHHHHHHHHHHhh
Confidence 65 599999999999864
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-26 Score=227.79 Aligned_cols=357 Identities=11% Similarity=0.038 Sum_probs=222.8
Q ss_pred EeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcc------cc--cCcCCChHHHHHHHHHHHhcC-------c
Q 013204 28 YDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY------HS--FWNRTTKPSLDLAKELLEMFT-------A 92 (447)
Q Consensus 28 ~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~------~~--~~~~~~~~~~~l~~~l~~~~~-------~ 92 (447)
||.++|.+.++..+...++++ ++.+.+++.+........ .. ....+.....++++.+++++. +
T Consensus 31 y~~~~~p~~~i~lg~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~ 108 (435)
T 3piu_A 31 YHEVHNTNGIIQMGLAENQLC--FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVT 108 (435)
T ss_dssp CBTTTBTTSBEECSSCCCCSS--HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSC
T ss_pred CCcccCCCCeEEecccccccc--HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCC
Confidence 778888777766676666666 678887777655422100 00 001122223556666666552 1
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCc
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHY 172 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
.+.+++++++||++|++.+++.++ ..++.|++.+++|++.........|.... .+++...
T Consensus 109 ~~~~~v~~~~gg~~a~~~~~~~l~--------~~gd~vl~~~p~~~~~~~~~~~~~g~~~~------------~~~~~~~ 168 (435)
T 3piu_A 109 FDPNHLVLTAGATSANETFIFCLA--------DPGEAVLIPTPYYPGFDRDLKWRTGVEIV------------PIHCTSS 168 (435)
T ss_dssp CCGGGEEEEEHHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHTTTTTCCEEE------------EEECCGG
T ss_pred CCHHHEEEcCChHHHHHHHHHHhc--------CCCCeEEECCCccccHHHHHHHhcCCEEE------------EeeCCCc
Confidence 357899999999999999999874 33478999999998876544322332211 1111110
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHhh--CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCC
Q 013204 173 WRYAHPGETEEEYSTRLANNLEDLILKE--GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250 (447)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~ 250 (447)
..+. . ++++|++.+... ...++++|++++.++.+|. +++.+.+++|+++|++||+++|+||+|+++
T Consensus 169 ~~~~---~--------d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~ 236 (435)
T 3piu_A 169 NGFQ---I--------TETALEEAYQEAEKRNLRVKGVLVTNPSNPLGT-TMTRNELYLLLSFVEDKGIHLISDEIYSGT 236 (435)
T ss_dssp GTSC---C--------CHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGG
T ss_pred cCCc---C--------CHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEecccccc
Confidence 0000 0 137777777542 1235677777766666665 556788999999999999999999999987
Q ss_pred Cccccccc-cccC----CCC-----CC----eeeecccCCCcccceeEEEe-ChhHHHHhhhccCCCCccCcCCCCCCcH
Q 013204 251 GRLGTMFG-CDKY----SIK-----PD----LVSFAKALSSAYMPIGAILV-SPEVSEVIHSQSNTLGSFSHGFTYSGHP 315 (447)
Q Consensus 251 g~~g~~~~-~~~~----~~~-----~d----~v~~sK~l~gg~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~ 315 (447)
++.|..+. .... ++. +| +.++||+++.+++|+|++++ ++++.+.+... ..++..++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~---------~~~~~~~~ 307 (435)
T 3piu_A 237 AFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM---------SSFGLVSS 307 (435)
T ss_dssp CCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHH---------GGGSCCCH
T ss_pred ccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHHH---------hhcCCCCH
Confidence 66665332 1111 111 33 44789999833389999999 56677766532 12344567
Q ss_pred HHHHHHHHHHHHHh-----hhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeee-eEEEEEeecCCCCCCCCCCCcchHH
Q 013204 316 VSCAVAIEALKIYK-----ERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTG-LILGTEFADNKSPNEPFPPEWGIGA 389 (447)
Q Consensus 316 ~~~~aa~a~l~~~~-----~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~ 389 (447)
++++++.++++..+ -++..++++++.+++++.|+++ ++ ....+.+ .++.+.+........ .....
T Consensus 308 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---g~-~~~~~~~g~~~~~~l~~~~~~~~-----~~~~~ 378 (435)
T 3piu_A 308 QTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS---GI-SCLNGNAGLFCWVDMRHLLRSNT-----FEAEM 378 (435)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---TC-EECCCCSSSEEEEECGGGSSSSS-----HHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC-cccCCCeeEEEEEEcccccccCC-----chhHH
Confidence 77777777665322 1234455666666777777654 22 2233444 677787765321100 00134
Q ss_pred HHHHHHHHc-CceEEee-------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 390 YFGAQCEKH-GMLVRVS-------GDNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 390 ~~~~~l~~~-Gi~~~~~-------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
.+.++|+++ ||++.++ .+.+||+++.. ++++|++++++|++++++++
T Consensus 379 ~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~~~ 433 (435)
T 3piu_A 379 ELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANL-PERTLDLAMQRLKAFVGEYY 433 (435)
T ss_dssp HHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSS-CHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeCC-CHHHHHHHHHHHHHHHHHHh
Confidence 577888777 9999874 25799997654 99999999999999987754
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.1e-26 Score=223.07 Aligned_cols=362 Identities=13% Similarity=0.058 Sum_probs=223.2
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCC--cccccCcCCChHHHHHHHHHHHhcCc-CCC-CeEEEeCChhhH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP--FYHSFWNRTTKPSLDLAKELLEMFTA-SKM-AKVFFTNSGSEA 107 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~-~~v~~~~sGseA 107 (447)
+..++||..+. ..++ .+|.+.+++.+++.+.. ..+....+..+....+++.+.+.+.. ..+ +++++++||++|
T Consensus 27 ~~~~i~l~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a 103 (422)
T 3fvs_A 27 EHDVVNLGQGF--PDFP-PPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGA 103 (422)
T ss_dssp TSCCEECCCSS--CSSC-CCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHH
T ss_pred cCCceEeCCCC--CCCC-CCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHH
Confidence 45789998775 3444 68999999999987632 11211112334445555555554321 234 589999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 108 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 108 ~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
++.+++.+. .++++|++.+++||++.......+...... ............+..+.+.
T Consensus 104 ~~~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~-~~~~~~~~~G~~~~~~~~~------------- 161 (422)
T 3fvs_A 104 LFTAFQALV--------DEGDEVIIIEPFFDCYEPMTMMAGGRPVFV-SLKPGPIQNGELGSSSNWQ------------- 161 (422)
T ss_dssp HHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTCEEEEE-ECBCCCCCSSSCCBGGGSB-------------
T ss_pred HHHHHHHHc--------CCCCEEEEcCCCchhhHHHHHHcCCEEEEE-ecccccccccccccccCCC-------------
Confidence 999999763 345789999999999865544432211110 0000000000000000000
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-ccccCC---
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-GCDKYS--- 263 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~~~~~~--- 263 (447)
.+++++++.+. +++++|++++.++.+|.+ .+.+.+++|+++|++||+++|+||+|+++.+.|... .+..+.
T Consensus 162 ~d~~~l~~~~~----~~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 236 (422)
T 3fvs_A 162 LDPMELAGKFT----SRTKALVLNTPNNPLGKV-FSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMW 236 (422)
T ss_dssp CCHHHHHTTCC----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTG
T ss_pred CCHHHHHhhcC----CCceEEEECCCCCCCCcC-CCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhccccc
Confidence 01366665553 356677777777777755 478899999999999999999999999887766422 222222
Q ss_pred -CCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHH-------h--hhcH
Q 013204 264 -IKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIY-------K--ERNI 333 (447)
Q Consensus 264 -~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~-------~--~~~~ 333 (447)
...++.++||.++.+++|+|++++++++++.+.. ..+..+++.++++++++.++++.. . -++.
T Consensus 237 ~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 309 (422)
T 3fvs_A 237 ERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLRT-------VHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQF 309 (422)
T ss_dssp GGEEEEEEHHHHHTCGGGCCEEEECCHHHHHHHHH-------HHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHH
T ss_pred CcEEEEecchhccCCccceEEEEEeCHHHHHHHHH-------HHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHH
Confidence 1133446899997434899999999999888753 233457778899999888888741 1 1234
Q ss_pred HHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCC--CCCCCCCCCcchHHHHHHHHH-HcCceEEee-----
Q 013204 334 VEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNK--SPNEPFPPEWGIGAYFGAQCE-KHGMLVRVS----- 405 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~----- 405 (447)
.++++++.+++.+.|+++ ++.......|.++.+++.... ...............+...++ ++||++.++
T Consensus 310 ~~~~~~~~~~l~~~L~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~ 386 (422)
T 3fvs_A 310 PQAMQRCRDHMIRSLQSV---GLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYS 386 (422)
T ss_dssp HHHHHHHHHHHHHHHHTT---TCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSC
T ss_pred HHHHHHHHHHHHHHHHHc---CCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcC
Confidence 556666667777777664 332223345666677665311 000000000011334666654 579998873
Q ss_pred -------CCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 406 -------GDNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 406 -------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
.+.+|++ +..++++|++++++|++++++
T Consensus 387 ~~~~~~~~~~iRis--~~~~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 387 VPHQKHFDHYIRFC--FVKDEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp HHHHTTSCSEEEEE--CCCCHHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCCeEEEE--ecCCHHHHHHHHHHHHHHHhh
Confidence 2569999 556999999999999998764
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-25 Score=215.24 Aligned_cols=329 Identities=10% Similarity=0.028 Sum_probs=207.6
Q ss_pred EEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeE
Q 013204 19 IEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKV 98 (447)
Q Consensus 19 ~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v 98 (447)
+.+++|.++++.+|++++||+++. ++++ .+|++.+++.+++.....+ +.....++.+++++++ +.+++++
T Consensus 1 ~~~~~g~~~~~~~g~~~id~~~~~--~~~~-~~~~v~~a~~~~~~~~~~y------~~~~~~~lr~~la~~~-~~~~~~i 70 (350)
T 3fkd_A 1 MIFGHGDEGITPLSSEIVNFSTTV--WTDG-DKDHLEKHLVENLNCIRHY------PEPDAGTLRQMLAKRN-SVDNNAI 70 (350)
T ss_dssp ---------------CCEECSCCS--CCCS-CCHHHHHHHHHTGGGGGSC------CCTTCHHHHHHHHHHT-TCCGGGE
T ss_pred CcccccchHhhhccccEEEccCCC--CCCC-CCHHHHHHHHHhHhHHhcC------CCCcHHHHHHHHHHHh-CcCHHHE
Confidence 356889999999999999998875 5566 7899999999887432211 2222367888998887 3566799
Q ss_pred EEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCC-CCcccCCC
Q 013204 99 FFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDC-PHYWRYAH 177 (447)
Q Consensus 99 ~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 177 (447)
++++||++|+..+++.+. +++|++.+++|++........+... ..++. ++.
T Consensus 71 ~~t~g~~~al~~~~~~l~----------gd~Vi~~~p~~~~~~~~~~~~g~~~-------------~~v~~~~~~----- 122 (350)
T 3fkd_A 71 LVTNGPTAAFYQIAQAFR----------GSRSLIAIPSFAEYEDACRMYEHEV-------------CFYPSNEDI----- 122 (350)
T ss_dssp EEESHHHHHHHHHHHHTT----------TCEEEEEESCCHHHHHHHHHTTCEE-------------EEEETTSCG-----
T ss_pred EEcCCHHHHHHHHHHHHC----------CCEEEEeCCCcHHHHHHHHHcCCeE-------------EEEecCCcc-----
Confidence 999999999999999762 4789999999998865544432211 11121 110
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc
Q 013204 178 PGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF 257 (447)
Q Consensus 178 ~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~ 257 (447)
+.+. .+++++|+++..++.+|.+. +.+.+.+|++.|+++ ++|+||+|++++..+...
T Consensus 123 -------------~~~~-------~~~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~~ 179 (350)
T 3fkd_A 123 -------------GEAD-------FSNMDFCWLCNPNNPDGRLL-QRTEILRLLNDHPDT--TFVLDQSYVSFTTEEVIR 179 (350)
T ss_dssp -------------GGSC-------CTTCSEEEEESSCTTTCCCC-CHHHHHHHHHHCTTS--EEEEECTTTTSCSSCCCC
T ss_pred -------------ccCc-------cCCCCEEEEeCCCCCcCCCC-CHHHHHHHHHhCCCC--EEEEECchhhhccCcchh
Confidence 0000 02344555555566666555 445555555555544 999999999887665432
Q ss_pred c--cccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcH
Q 013204 258 G--CDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNI 333 (447)
Q Consensus 258 ~--~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~ 333 (447)
. ....+....+.++||.++.+++++|++++++++++.+... ..+++.+++++.++.++|+... .+..
T Consensus 180 ~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (350)
T 3fkd_A 180 PADIKGRKNLVMVYSFSHAYGIPGLRIGYIVANKDFMKRVAAF---------STPWAVNALAIEAAKFILIHPAQFTLPI 250 (350)
T ss_dssp GGGGTTCSSEEEEEESHHHHSCGGGCCEEEECCHHHHHHHHTT---------CCTTCSCHHHHHHHHHHHHCTTTTCCCH
T ss_pred hHHhhcCCCEEEEecCchhccCcchheEeEEeCHHHHHHHHHh---------CCCCCCCHHHHHHHHHHHhCHHHHHHHH
Confidence 2 1111111223368999884338999999999999988732 1356778999998888887433 1233
Q ss_pred HHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHH-cCceEEee-------
Q 013204 334 VEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEK-HGMLVRVS------- 405 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~------- 405 (447)
.+. .++.+++.+.|+++ +.+...++.|.++.+.+.... ...+.+.|++ +||.+.++
T Consensus 251 ~~~-~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~~~------------~~~l~~~L~~~~gi~v~~g~~f~~~~ 314 (350)
T 3fkd_A 251 RKW-QRNTVDFITALNRL---DGVEVHPSGTTFFLLRLKKGT------------AAELKKYMLEEYNMLIRDASNFRGLD 314 (350)
T ss_dssp HHH-HHHHHHHHHHHHHS---TTEEECCCSSSEEEEEESSSC------------HHHHHHHHHHTTCEECEECTTSTTCC
T ss_pred HHH-HHHHHHHHHHHhcC---CCcEECCCCCcEEEEECCCCC------------HHHHHHHHHHHCCEEEEeCccCCCCC
Confidence 333 36677777777765 333334566777777765421 4568888998 99999876
Q ss_pred CCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 406 GDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 406 g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.+.+|+++ .+++++++++++|++.+++.
T Consensus 315 ~~~iRis~---~~~~~~~~l~~al~~~~~~~ 342 (350)
T 3fkd_A 315 ESYVRITT---QRPAQNQLFIKALETFLEKY 342 (350)
T ss_dssp TTEEEEEC---CCHHHHHHHHHHHHHHHTC-
T ss_pred CCEEEEEc---CCHHHHHHHHHHHHHHHHHh
Confidence 25799994 38899999999998887653
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.9e-25 Score=215.46 Aligned_cols=330 Identities=12% Similarity=0.058 Sum_probs=215.7
Q ss_pred CCCCHHHHHHHHHHHhcCCcc-cc----cCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhc
Q 013204 48 GGSEPRLVAAATAQLNTLPFY-HS----FWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNAL 122 (447)
Q Consensus 48 G~~~p~v~~a~~~~~~~~~~~-~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~ 122 (447)
|+.+|++.+++.+++.+.... +. ....+.+...++++++++++...+.++++|++||++|++.+++.++.++
T Consensus 33 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~--- 109 (406)
T 1kmj_A 33 AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSN--- 109 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHH---
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhc---
Confidence 468899999999998764211 10 0001345677899999998742146799999999999999999874221
Q ss_pred CCCCcceEEEEcCCCccchhhh---hcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHh
Q 013204 123 GRPNKKKFIARQKSYHGSTLIA---ASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILK 199 (447)
Q Consensus 123 ~~~~~~~vi~~~~~yhg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~ 199 (447)
. .++++|++.+++||+..... ....|... ..++.+..+. . ++++|++.+.
T Consensus 110 ~-~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~------------~~~~~~~~~~-----~--------d~~~l~~~l~- 162 (406)
T 1kmj_A 110 V-RAGDNIIISQMEHHANIVPWQMLCARVGAEL------------RVIPLNPDGT-----L--------QLETLPTLFD- 162 (406)
T ss_dssp C-CTTCEEEEETTCCGGGTHHHHHHHHHHTCEE------------EEECBCTTSC-----B--------CGGGHHHHCC-
T ss_pred C-CCCCEEEEecccchHHHHHHHHHHHhCCCEE------------EEEecCCCCC-----c--------CHHHHHHHhc-
Confidence 1 23478999999999875321 11122211 1111111100 0 0266776664
Q ss_pred hCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCC
Q 013204 200 EGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSS 277 (447)
Q Consensus 200 ~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~g 277 (447)
+++++|+++++++.+|.+.+ +++|.++|++||+++|+||+|+ +|.. .+... ...+|+++ ++|.++.
T Consensus 163 ---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~-~g~~--~~~~~--~~~~d~~~~s~~K~~g~ 230 (406)
T 1kmj_A 163 ---EKTRLLAITHVSNVLGTENP----LAEMITLAHQHGAKVLVDGAQA-VMHH--PVDVQ--ALDCDFYVFSGHKLYGP 230 (406)
T ss_dssp ---TTEEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTT-TTTS--CCCHH--HHTCSEEEEEGGGTTSC
T ss_pred ---cCCeEEEEeCCCccccCcCC----HHHHHHHHHHcCCEEEEEchhh-cCCC--CCccc--ccCCCEEEEEchhccCC
Confidence 35788999999888888776 9999999999999999999997 3332 11111 23478764 7898843
Q ss_pred cccceeEEEeChhHHHHhhhccCCCCc--------------cCcCCCCCCcHHHHHHHH-HHHHHHhh---hcHHHHHHH
Q 013204 278 AYMPIGAILVSPEVSEVIHSQSNTLGS--------------FSHGFTYSGHPVSCAVAI-EALKIYKE---RNIVEQVNK 339 (447)
Q Consensus 278 g~~~~g~~~~~~~~~~~~~~~~~~~~~--------------~~~~~t~~~~~~~~~aa~-a~l~~~~~---~~~~~~~~~ 339 (447)
.++|++++++++++.+......... .....+.+.+++.+.+++ ++++.+.+ +++.+++++
T Consensus 231 --~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~ 308 (406)
T 1kmj_A 231 --TGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQN 308 (406)
T ss_dssp --TTCEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred --CCcEEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 3489999999998887532100000 000011223445544444 67777654 345677777
Q ss_pred HHHHHHHhHhhccCCCceeeEee--eeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-----------
Q 013204 340 IAPKFQDGVKAFSDSPIIGEIRG--TGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG----------- 406 (447)
Q Consensus 340 ~~~~l~~~L~~l~~~~~~~~~~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g----------- 406 (447)
+.+++.+.|++++ .+..... .|.++.+.+... ....+.+.|.++||.+.++.
T Consensus 309 ~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g 373 (406)
T 1kmj_A 309 LMHYALSQLESVP---DLTLYGPQNRLGVIAFNLGKH------------HAYDVGSFLDNYGIAVRTGHHCAMPLMAYYN 373 (406)
T ss_dssp HHHHHHHHHTTST---TEEEESCTTCCSEEEEEETTC------------CHHHHHHHHHHTTEECEEECTTCHHHHHHTT
T ss_pred HHHHHHHHHhcCC---CeEEecCCCcCCEEEEEECCC------------CHHHHHHHHhhCCcEEEeccccchHHHHhcC
Confidence 8888888887653 2222333 577777765321 13457788999999988652
Q ss_pred --CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 407 --DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 407 --~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+.+|++++..+|++++++++++|+++++.+
T Consensus 374 ~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 374 VPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp CSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence 579999999899999999999999988754
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-26 Score=224.15 Aligned_cols=346 Identities=10% Similarity=0.041 Sum_probs=216.3
Q ss_pred CCCEEEecCCccccccCCC--CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC-----CCCeEEE--e
Q 013204 31 NGKKYLDSLAGLWCTALGG--SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS-----KMAKVFF--T 101 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~~v~~--~ 101 (447)
+|+.++||..+....+.|+ .+|.+.+++.+.+.+....+. ..+.....++.+.+++++... ..+++++ +
T Consensus 28 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~--y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t 105 (412)
T 1ajs_A 28 PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHE--YLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQS 105 (412)
T ss_dssp CCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCC--CCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred CCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccC--CCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEEC
Confidence 4778999988864344444 458999999888732111111 112333466777777776321 4578999 9
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCCCc-----ceEEEEcCCCccchhhhhcccCC-ccccCCCCCCCCcceecCCC--Ccc
Q 013204 102 NSGSEANDTQVKLVWYYNNALGRPNK-----KKFIARQKSYHGSTLIAASLSGL-PALHQKFDLPAPFVLHTDCP--HYW 173 (447)
Q Consensus 102 ~sGseA~~~Al~~~~~~~~~~~~~~~-----~~vi~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~ 173 (447)
+||++|++.+++++... .++ ++|++.+++||++.......+.. .. .++.. +.+
T Consensus 106 ~gg~~a~~~~~~~~~~~------~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~-------------~~~~~~~~~~ 166 (412)
T 1ajs_A 106 LGGTGALRIGAEFLARW------YNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIR-------------SYRYWDTEKR 166 (412)
T ss_dssp EHHHHHHHHHHHHHHHH------SSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEE-------------EEECEETTTT
T ss_pred CCcHHHHHHHHHHHHHh------CcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeE-------------EEeeecCCCC
Confidence 99999999998865433 223 68999999999987655443322 11 11110 000
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcc
Q 013204 174 RYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRL 253 (447)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~ 253 (447)
. .+++++++.+....++...+++.+|.|++ | ..++.+++++|.++|++||+++|+||+|+++++.
T Consensus 167 ~-------------~d~~~l~~~l~~~~~~~~~v~~~~p~npt-G-~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~ 231 (412)
T 1ajs_A 167 G-------------LDLQGFLSDLENAPEFSIFVLHACAHNPT-G-TDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASG 231 (412)
T ss_dssp E-------------ECHHHHHHHHHHSCTTCEEEEESSSCTTT-C-CCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTS
T ss_pred c-------------cCHHHHHHHHHhCCCCcEEEEECCCCCCC-C-CCCCHHHHHHHHHHHHHCCCEEEEEcccccccCC
Confidence 0 01477888776543333433345555555 4 4568899999999999999999999999999876
Q ss_pred c---cccccccCCCCCC----eeeecccCCCcccceeEEEe---ChhHHHHhhhccCCCCccCcCCCCC-CcHHHHHHHH
Q 013204 254 G---TMFGCDKYSIKPD----LVSFAKALSSAYMPIGAILV---SPEVSEVIHSQSNTLGSFSHGFTYS-GHPVSCAVAI 322 (447)
Q Consensus 254 g---~~~~~~~~~~~~d----~v~~sK~l~gg~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~t~~-~~~~~~~aa~ 322 (447)
| ....+..+...+| +.++||.++..++|+|++++ ++++++.+...- .. .+..++. .++++++++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~a~~ 307 (412)
T 1ajs_A 232 NLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQM---QK-IVRVTWSNPPAQGARIVA 307 (412)
T ss_dssp CHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHH---HH-HHHTTTSSCCSHHHHHHH
T ss_pred cccccchHHHHHhccCCcEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHH---HH-HHhcccCCCChHHHHHHH
Confidence 5 3223322211233 34789999883389999999 887443322100 01 0113444 5888888888
Q ss_pred HHHHHHh--------hhcHHHHHHHHHHHHHHhHhhccCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHH
Q 013204 323 EALKIYK--------ERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGA 393 (447)
Q Consensus 323 a~l~~~~--------~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 393 (447)
++|+... -++..++++++++++.+.|+++.....+....+. |.+..+.+. ...+..
T Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~ 372 (412)
T 1ajs_A 308 RTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLN---------------PKQVEY 372 (412)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCC---------------HHHHHH
T ss_pred HHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCCC---------------HHHHHH
Confidence 8887431 2445677788888888888776200011111222 333332221 223455
Q ss_pred HHHHcCceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 394 QCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 394 ~l~~~Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
.+.++||++.++ +|+++.. .+++++++++++|++++++
T Consensus 373 ~l~~~gv~v~~~---~Ris~~~-~~~~~i~~~~~~l~~~l~~ 410 (412)
T 1ajs_A 373 LINQKHIYLLPS---GRINMCG-LTTKNLDYVATSIHEAVTK 410 (412)
T ss_dssp HHHTTCEECCTT---SEEEGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred HHHhCCEEecCC---cEEEeee-CCHHHHHHHHHHHHHHHHh
Confidence 566889998864 6999663 5999999999999998865
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-25 Score=214.71 Aligned_cols=324 Identities=12% Similarity=0.147 Sum_probs=219.5
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQ 111 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~A 111 (447)
++.++||.++. ++++ .+|++++++.+++.....+ +.....++.+++++++. .+.+++++++||++|++.+
T Consensus 29 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y------~~~~~~~lr~~la~~~~-~~~~~v~~~~g~~~a~~~~ 98 (365)
T 3get_A 29 VKEVIKLASNE--NPFG-TPPKAIECLRQNANKAHLY------PDDSMIELKSTLAQKYK-VQNENIIIGAGSDQVIEFA 98 (365)
T ss_dssp CSCCEECSSCC--CTTC-SCHHHHHHHHHHGGGTTSC------CCTTCHHHHHHHHHHHT-CCGGGEEEESSHHHHHHHH
T ss_pred CCceEEecCCC--CCCC-CCHHHHHHHHHHHHhhccC------CCCChHHHHHHHHHHhC-CCcceEEECCCHHHHHHHH
Confidence 37899998775 5566 7899999999998753222 12222578888888873 4577999999999999999
Q ss_pred HHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHH
Q 013204 112 VKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191 (447)
Q Consensus 112 l~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (447)
++.+. .++++|++.+++|++........+... ..++.++ +.+ .+++
T Consensus 99 ~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~-------------~~v~~~~-----------~~~--~d~~ 144 (365)
T 3get_A 99 IHSKL--------NSKNAFLQAGVTFAMYEIYAKQCGAKC-------------YKTQSIT-----------HNL--DEFK 144 (365)
T ss_dssp HHHHC--------CTTCEEEECSSCCTHHHHHHHHHTCEE-------------EECSSSS-----------CCH--HHHH
T ss_pred HHHHh--------CCCCEEEEeCCChHHHHHHHHHcCCEE-------------EEEecCC-----------CCC--CCHH
Confidence 99763 335789999999988765444322211 1111100 112 3457
Q ss_pred HHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc--ccc-cc-cccc---CCC
Q 013204 192 NLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR--LGT-MF-GCDK---YSI 264 (447)
Q Consensus 192 ~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~--~g~-~~-~~~~---~~~ 264 (447)
++++.+. +++++|+++..++.+|.+. +.+.+.+|+++| ++|+++|+||+|+++.. .+. .. .... .+.
T Consensus 145 ~l~~~l~----~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (365)
T 3get_A 145 KLYETHK----DEIKLIFLCLPNNPLGECL-DASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDN 218 (365)
T ss_dssp HHHHHTT----TTEEEEEEESSCTTTCCCC-CHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTT
T ss_pred HHHHHhC----CCCCEEEEcCCCCCCCCCc-CHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCC
Confidence 7777765 3566666665555566544 566677777777 57999999999997642 221 11 1111 222
Q ss_pred CCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHHHHHHHHHH
Q 013204 265 KPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVEQVNKIAPK 343 (447)
Q Consensus 265 ~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~~~~~~~~~ 343 (447)
...+.++||.++.+++++|++++++++++.+... ..+++.++++++++.++++..+ -++..++++++.++
T Consensus 219 ~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 289 (365)
T 3get_A 219 VLYLGTFSKLYGLGGLRIGYGIANANIISAFYKL---------RAPFNVSNLALKAAVAAMDDDEFTEKTLENNFSQMEL 289 (365)
T ss_dssp EEEEEESSSTTSCTTTCCEEEEECHHHHHHHHHH---------SCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeecchHhcCcchheEEEEcCHHHHHHHHHh---------cCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 2223368999874448999999999999888642 1245678899888888886321 13345666667777
Q ss_pred HHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC----CEEEEecCCCCCH
Q 013204 344 FQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG----DNIMMSPPFIMSP 419 (447)
Q Consensus 344 l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g----~~iR~~~~~~~t~ 419 (447)
+++.|+++ + +....+.|.++.+.+.... ...+.+.|.++||.+.++. +.+|+++. ++
T Consensus 290 l~~~l~~~---g-~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~---~~ 350 (365)
T 3get_A 290 YKEFAKKH---N-IKIIDSYTNFITYFFDEKN------------STDLSEKLLKKGIIIRNLKSYGLNAIRITIG---TS 350 (365)
T ss_dssp HHHHHHHT---T-CEECCCSSSEEEEECSSSC------------HHHHHHHHHTTTEECEECGGGTCSEEEEECC---CH
T ss_pred HHHHHHhC---C-CEECCCCCeEEEEECCCCC------------HHHHHHHHHHCCEEEEECccCCCCEEEEEcC---CH
Confidence 77777765 2 2234456777777665421 4568889999999999874 67999944 89
Q ss_pred HHHHHHHHHHHHHH
Q 013204 420 EEVDELISKYGKAL 433 (447)
Q Consensus 420 e~i~~~~~~l~~~l 433 (447)
+++++++++|++++
T Consensus 351 ~~i~~l~~~l~~~l 364 (365)
T 3get_A 351 YENEKFFTEFDKIL 364 (365)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998875
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-24 Score=212.08 Aligned_cols=332 Identities=14% Similarity=0.071 Sum_probs=211.4
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHh-----cCC
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNA-----LGR 124 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~-----~~~ 124 (447)
.+|++.+++.+++......+.......+...++++++++.+. .+.+++++++||++|++.+++.++..... .+.
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~-~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~ 120 (397)
T 3f9t_A 42 VLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLN-NKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSK 120 (397)
T ss_dssp CCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTT-CTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhC-CCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccC
Confidence 578999999998876332221111234555678888888863 46679999999999999999987643110 012
Q ss_pred CCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCc
Q 013204 125 PNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPET 204 (447)
Q Consensus 125 ~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~ 204 (447)
+++++|++.+++|++........ |.. +..++....+. .++++|++.+... +
T Consensus 121 ~~gd~vl~~~~~~~~~~~~~~~~-g~~------------~~~v~~~~~~~-------------~d~~~l~~~i~~~---~ 171 (397)
T 3f9t_A 121 NEHPKIIVPITAHFSFEKGREMM-DLE------------YIYAPIKEDYT-------------IDEKFVKDAVEDY---D 171 (397)
T ss_dssp CSSCEEEEETTCCTHHHHHHHHH-TCE------------EEEECBCTTSS-------------BCHHHHHHHHHHS---C
T ss_pred CCCeEEEECCcchhHHHHHHHHc-Cce------------eEEEeeCCCCc-------------CCHHHHHHHHhhc---C
Confidence 23578999999888865444332 221 11222211110 0147888888642 3
Q ss_pred EEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc--ccc---------ccccccCCCCCCeeeecc
Q 013204 205 IAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR--LGT---------MFGCDKYSIKPDLVSFAK 273 (447)
Q Consensus 205 ~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~--~g~---------~~~~~~~~~~~d~v~~sK 273 (447)
+++|+++++++.+|.+.+ +++|.++|++||+++|+||+|+++.. .+. .+.... ++...+.+++|
T Consensus 172 ~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K 246 (397)
T 3f9t_A 172 VDGIIGIAGTTELGTIDN----IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHK 246 (397)
T ss_dssp CCEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTT
T ss_pred CeEEEEECCCCCCCCCCC----HHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEcccc
Confidence 456666666677777765 99999999999999999999986432 222 222222 33333445679
Q ss_pred cCCCcccceeEEEeChh-HHHHhhhccCCCCc----cCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhH
Q 013204 274 ALSSAYMPIGAILVSPE-VSEVIHSQSNTLGS----FSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGV 348 (447)
Q Consensus 274 ~l~gg~~~~g~~~~~~~-~~~~~~~~~~~~~~----~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L 348 (447)
.+++| .++|+++.+++ +.+.+......... ...+++...+++++.++++.+....-++..++.+++.+++.+.|
T Consensus 247 ~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L 325 (397)
T 3f9t_A 247 MGHCP-IPSGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKL 325 (397)
T ss_dssp TTCCC-SSCEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCC-CCceEEEEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776 69999888655 44444221110000 00112223355666666665543333556777888888999988
Q ss_pred hhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC--CEEEEecCCCCCHHHHHHHH
Q 013204 349 KAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--DNIMMSPPFIMSPEEVDELI 426 (447)
Q Consensus 349 ~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g--~~iR~~~~~~~t~e~i~~~~ 426 (447)
+++ +...+.. ..+.++.+.+.. ...+.+.|.++||++.++. +.+|++++..+|++++++++
T Consensus 326 ~~~-g~~~~~~--~~~~~~~~~~~~--------------~~~~~~~l~~~gi~v~~~~~~~~~Ri~~~~~~~~e~i~~~~ 388 (397)
T 3f9t_A 326 KEN-NFKPVIE--PILNIVAIEDED--------------YKEVCKKLRDRGIYVSVCNCVKALRIVVMPHIKREHIDNFI 388 (397)
T ss_dssp HHT-TCCBSSC--CSSSEEEEECTT--------------HHHHHHHHHHTTCBCEECSSSSEEEEECCTTCCHHHHHHHH
T ss_pred HHC-CCEEEcC--CCccEEEEEeCC--------------HHHHHHHHHhCCeEEeccCCCCEEEEEEcCCCCHHHHHHHH
Confidence 877 4332222 334555554432 3458889999999999876 68999999889999999999
Q ss_pred HHHHHHHH
Q 013204 427 SKYGKALK 434 (447)
Q Consensus 427 ~~l~~~l~ 434 (447)
++|+++++
T Consensus 389 ~~l~~~l~ 396 (397)
T 3f9t_A 389 EILNSIKR 396 (397)
T ss_dssp HHHHHHC-
T ss_pred HHHHHhhC
Confidence 99998764
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-25 Score=217.10 Aligned_cols=348 Identities=12% Similarity=0.109 Sum_probs=224.2
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcc-c-ccCcC---CChHHHHHHHHHHHhcCcCCCCeEEEeCChh
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY-H-SFWNR---TTKPSLDLAKELLEMFTASKMAKVFFTNSGS 105 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~-~~~~~---~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGs 105 (447)
+|+.+++|..+.. ++.+|++.+++.+++.+.... + ..... ..+...++.+.+++++...+.+++++++||+
T Consensus 25 ~g~~~i~l~~~~~----~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t 100 (420)
T 1t3i_A 25 NGHPLVYLDNAAT----SQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNAT 100 (420)
T ss_dssp TTEECEECBTTTC----CCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHH
T ss_pred CCCceEEecCCcc----CCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChH
Confidence 5677888765532 367899999999998763211 1 00001 1345678889999987422457899999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchh---hhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCCh
Q 013204 106 EANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTL---IAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETE 182 (447)
Q Consensus 106 eA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (447)
+|++.+++.++... . .++++|++.+++||+... ......|... ..++.+..+.
T Consensus 101 ~a~~~~~~~~~~~~---~-~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~------------~~v~~~~~~~-------- 156 (420)
T 1t3i_A 101 EAINLVAYSWGMNN---L-KAGDEIITTVMEHHSNLVPWQMVAAKTGAVL------------KFVQLDEQES-------- 156 (420)
T ss_dssp HHHHHHHHHTHHHH---C-CTTCEEEEETTCCGGGTHHHHHHHHHHCCEE------------EEECBCTTSS--------
T ss_pred HHHHHHHHHhhhcc---c-CCCCEEEECcchhHHHHHHHHHHHHhcCcEE------------EEeccCCCCC--------
Confidence 99999999873210 1 234789999999999631 1111112111 1122111110
Q ss_pred hHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccC
Q 013204 183 EEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKY 262 (447)
Q Consensus 183 ~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~ 262 (447)
.+++++++.+. +++++|+++++++.+|.+.+ +++|.++|++||+++|+||+|+ +|... +....+
T Consensus 157 -----~d~~~l~~~l~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~~--~~~~~~ 220 (420)
T 1t3i_A 157 -----FDLEHFKTLLS----EKTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQS-APHYP--LDVQLI 220 (420)
T ss_dssp -----BCHHHHHHHCC----TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC--CCHHHH
T ss_pred -----cCHHHHHHhhC----CCceEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEEhhhc-cCCcc--Cchhhc
Confidence 01366777664 35788899999888888776 9999999999999999999997 43321 112222
Q ss_pred CCCCCeeeec--ccCCCcccceeEEEeChhHHHHhhhccCCCCc-------------cCcCCCCCCcHHHHHHHHH-HHH
Q 013204 263 SIKPDLVSFA--KALSSAYMPIGAILVSPEVSEVIHSQSNTLGS-------------FSHGFTYSGHPVSCAVAIE-ALK 326 (447)
Q Consensus 263 ~~~~d~v~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~-------------~~~~~t~~~~~~~~~aa~a-~l~ 326 (447)
.+|++++| |.++. .++|++++++++++.+......... .....+.+.+++.+.++++ +++
T Consensus 221 --~~di~~~s~sK~~~~--~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~ 296 (420)
T 1t3i_A 221 --DCDWLVASGHKMCAP--TGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVD 296 (420)
T ss_dssp --TCSEEEEEGGGTTSC--TTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHH
T ss_pred --CCCEEEEehhhhcCC--CceEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHH
Confidence 37888765 95543 3589999999998887532110000 0000122344455555444 677
Q ss_pred HHhh---hcHHHHHHHHHHHHHHhHhhccCCCceeeEe---eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCc
Q 013204 327 IYKE---RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIR---GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGM 400 (447)
Q Consensus 327 ~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~---~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 400 (447)
.+.+ +++.++.+++.+++.+.|+++.+..+..... +.|.++.+.+... ....+.+.|.++||
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~gi 364 (420)
T 1t3i_A 297 YLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGL------------HASDVATMVDQDGI 364 (420)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTB------------CHHHHHHHHHTTTE
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEECCC------------CHHHHHHHHHHCCe
Confidence 6654 4566777888888888887753222221111 2367777766421 13457788999999
Q ss_pred eEEee-------------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 401 LVRVS-------------GDNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 401 ~~~~~-------------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
.+.++ .+.+|++++..++++++++++++|+++++++++
T Consensus 365 ~v~~~~~~~~~~~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~~~ 415 (420)
T 1t3i_A 365 AIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFFSD 415 (420)
T ss_dssp ECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHTC-
T ss_pred EEeeccccchHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99876 356999999889999999999999999987654
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-25 Score=217.12 Aligned_cols=338 Identities=14% Similarity=0.100 Sum_probs=224.4
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCccccc--CcCC--ChHHHHHHHHHHHhcCcCCCCeEEEeCChhh
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSF--WNRT--TKPSLDLAKELLEMFTASKMAKVFFTNSGSE 106 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~--~~~~--~~~~~~l~~~l~~~~~~~~~~~v~~~~sGse 106 (447)
++..|+|.. ..|+.+|++.+++.+++.+....... ...+ .+...++.+.+++++. .+.+++++++||++
T Consensus 15 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g-~~~~~v~~~~g~t~ 87 (390)
T 1elu_A 15 ANKTYFNFG------GQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFN-VDPNTITITDNVTT 87 (390)
T ss_dssp TTSEECCTT------TCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTT-SCGGGEEEESSHHH
T ss_pred CCeEEecCC------ccCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcC-CCHHHEEEeCChHH
Confidence 456677752 35778899999999988653211000 0011 2567789999999873 45668999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh---hcccCCccccCCCCCCCCcceecCCC--CcccCCCCCCC
Q 013204 107 ANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA---ASLSGLPALHQKFDLPAPFVLHTDCP--HYWRYAHPGET 181 (447)
Q Consensus 107 A~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 181 (447)
|++.+++.++ . .++++|++.+++||+..... ....|... ..++.+ +.+.
T Consensus 88 a~~~~~~~~~------~-~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~------------~~v~~~~~~~~~------- 141 (390)
T 1elu_A 88 GCDIVLWGLD------W-HQGDEILLTDCEHPGIIAIVQAIAARFGITY------------RFFPVAATLNQG------- 141 (390)
T ss_dssp HHHHHHHHSC------C-CTTCEEEEETTCCHHHHHHHHHHHHHHCCEE------------EEECCGGGSSSS-------
T ss_pred HHHHHHhCCC------C-CCCCEEEEecCcccHHHHHHHHHHHHhCcEE------------EEEcCCCCCCcc-------
Confidence 9999999762 0 33578999999999975331 11112111 112221 0000
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHH----hcCCEEEEehhhcCCCcccccc
Q 013204 182 EEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVK----KYDILFIADEVICAFGRLGTMF 257 (447)
Q Consensus 182 ~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~----~~g~~li~DEv~~g~g~~g~~~ 257 (447)
.++++|++.+. +++++|+++++++.+|.+.+ +++|.++|+ +||+++|+||+|+ +|..+
T Consensus 142 ------~d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~li~Dea~~-~g~~~--- 203 (390)
T 1elu_A 142 ------DAAAVLANHLG----PKTRLVILSHLLWNTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSLP--- 203 (390)
T ss_dssp ------CHHHHHHTTCC----TTEEEEEEESBCTTTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTBC---
T ss_pred ------chHHHHHHhcC----CCceEEEEeccccCCceecC----HHHHHHHHhhhhhhcCcEEEEEcccc-cCCcC---
Confidence 11355665553 35788889998888888776 999999999 9999999999997 55432
Q ss_pred ccccCCCCCCeee--ecccCCCcccceeEEEeChhHHHHhhhccCCCCc---------------cCcCCCCCCcHHHHHH
Q 013204 258 GCDKYSIKPDLVS--FAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGS---------------FSHGFTYSGHPVSCAV 320 (447)
Q Consensus 258 ~~~~~~~~~d~v~--~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~---------------~~~~~t~~~~~~~~~a 320 (447)
.......+|+++ ++|.+.+| .++|++++++++++.+.......+. .......+.+++++++
T Consensus 204 -~~~~~~~~d~~~~s~~K~~~~~-~g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 281 (390)
T 1elu_A 204 -LDFSRLEVDYYAFTGHKWFAGP-AGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAG 281 (390)
T ss_dssp -CCTTTSCCSEEEEESSSTTCCC-TTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHH
T ss_pred -CChhhcCCCEEEccccccccCC-CceEEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHH
Confidence 122234578876 78977776 6899999999888776531100000 0011233557777777
Q ss_pred HHHHHHHHhhhc----HHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH
Q 013204 321 AIEALKIYKERN----IVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE 396 (447)
Q Consensus 321 a~a~l~~~~~~~----~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 396 (447)
+.++++.+...+ ..++++++.+++.+.|+++.+..+....++.|.++.+.+.... ....+.+.|.
T Consensus 282 ~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~ 350 (390)
T 1elu_A 282 LLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPL-----------GHRAIVQKLE 350 (390)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSS-----------CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCccccccEEEEEcCCCC-----------CHHHHHHHHH
Confidence 777887665433 5677777888888888775322211111356777777764211 1456888899
Q ss_pred HcCceEEeeC--CEEEEecCCCCCHHHHHHHHHHHHHH
Q 013204 397 KHGMLVRVSG--DNIMMSPPFIMSPEEVDELISKYGKA 432 (447)
Q Consensus 397 ~~Gi~~~~~g--~~iR~~~~~~~t~e~i~~~~~~l~~~ 432 (447)
++||++.++. +.+|++++..++++++++++++|+++
T Consensus 351 ~~gi~v~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 351 EQRIYLRTIADPDCIRACCHYITDEEEINHLLARLADF 388 (390)
T ss_dssp HTTEECEEETTTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred HCCEEEEecCCCCeEEEecccCCCHHHHHHHHHHHHhh
Confidence 9999999875 68999999899999999999998753
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=221.32 Aligned_cols=348 Identities=11% Similarity=0.063 Sum_probs=217.8
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcC------CcccccCcCCCh-HHHHHHHHHHHhcC---c----CCCCeE
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTL------PFYHSFWNRTTK-PSLDLAKELLEMFT---A----SKMAKV 98 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~------~~~~~~~~~~~~-~~~~l~~~l~~~~~---~----~~~~~v 98 (447)
+.++||.++. ++++ +|.+.+++.+..... .........+.. ...++.+.+++++. + .+.+++
T Consensus 36 ~~~i~l~~~~--~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i 111 (428)
T 1iay_A 36 NGVIQMGLAE--NQLC--LDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERV 111 (428)
T ss_dssp TSBEECSSCC--CCSS--HHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSC
T ss_pred Cceeeecccc--chhh--HHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhE
Confidence 4688997664 5666 478888877532100 000000001111 13455555555542 1 356789
Q ss_pred EEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCC
Q 013204 99 FFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHP 178 (447)
Q Consensus 99 ~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (447)
++++|++++++.+++.++ ..+++|++.+++||+.........|... ..++......+
T Consensus 112 ~~~~G~~~ai~~~~~~~~--------~~gd~Vl~~~p~y~~~~~~~~~~~g~~~------------~~v~~~~~~~~--- 168 (428)
T 1iay_A 112 VMAGGATGANETIIFCLA--------DPGDAFLVPSPYYPAFNRDLRWRTGVQL------------IPIHCESSNNF--- 168 (428)
T ss_dssp EEEEHHHHHHHHHHHHHC--------CTTCEEEEESSCCTTHHHHTTTTTCCEE------------EEECCCTTTTT---
T ss_pred EEccChHHHHHHHHHHhC--------CCCCeEEEccCCCcchHHHHHHhcCCEE------------EEeecCCccCC---
Confidence 999999999999999773 2347899999999997643332233221 11121100000
Q ss_pred CCChhHHHHHHHHHHHHHHHhh--CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccc
Q 013204 179 GETEEEYSTRLANNLEDLILKE--GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTM 256 (447)
Q Consensus 179 ~~~~~~~~~~~~~~le~~l~~~--~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~ 256 (447)
.. +++++++.+... ...++++|+++..++.+|. ..+.+++++|.++|++||+++|+||+|+++++.+..
T Consensus 169 ~~--------d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~ 239 (428)
T 1iay_A 169 KI--------TSKAVKEAYENAQKSNIKVKGLILTNPSNPLGT-TLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQ 239 (428)
T ss_dssp CC--------CHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSC
T ss_pred cC--------CHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCC-cCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCC
Confidence 00 136777776532 2234666665555555665 468899999999999999999999999987655432
Q ss_pred c-cc-cc--C----CCCCC----eeeecccCCCcccceeEEEe-ChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHH
Q 013204 257 F-GC-DK--Y----SIKPD----LVSFAKALSSAYMPIGAILV-SPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIE 323 (447)
Q Consensus 257 ~-~~-~~--~----~~~~d----~v~~sK~l~gg~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a 323 (447)
+ .. .. . ++.+| +.++||.++.+++|+|++++ ++++++.+... ..+++.++++++++.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~a~~~ 310 (428)
T 1iay_A 240 FVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKM---------SSFGLVSTQTQYFLAA 310 (428)
T ss_dssp CCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHH---------HTTSCCCHHHHHHHHH
T ss_pred ccCHHHhccccccccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHH---------HhcccCCHHHHHHHHH
Confidence 2 11 11 1 23367 44789999844489999998 67888877632 1235678888888888
Q ss_pred HHHHHh-----hhcHHHHHHHHHHHHHHhHhhccCCCceeeEee-eeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHH
Q 013204 324 ALKIYK-----ERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRG-TGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEK 397 (447)
Q Consensus 324 ~l~~~~-----~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 397 (447)
+++... -++..++++++.+++.+.|+++ +..+ ..+ .|.++.+.+....... .......+.+.|++
T Consensus 311 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~---~~~~~g~~~~~~~~~~~~~~-----~~~~~~~l~~~l~~ 381 (428)
T 1iay_A 311 MLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIKC---LKNNAGLFCWMDLRPLLRES-----TFDSEMSLWRVIIN 381 (428)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCB---CCCSSSSEEEEECGGGCSSS-----SHHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcc---cCCCeeEEEEEechhhcCCC-----chhHHHHHHHHHHH
Confidence 776422 1345667777788888888776 3222 233 4667777775421100 00023457888887
Q ss_pred c-CceEEeeC-------CEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 398 H-GMLVRVSG-------DNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 398 ~-Gi~~~~~g-------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+ ||++.+++ +.+|++++ .++++++++++++|++++++
T Consensus 382 ~~gi~v~~~~~~~~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 382 DVKLNVSPGSSFECQEPGWFRVCFA-NMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp TSCEECEEGGGGTCSSSSEEEEECS-SSCHHHHHHHHHHHHHHHHT
T ss_pred hCCEEEeCchhhCCCCCCEEEEEEe-cCCHHHHHHHHHHHHHHHhc
Confidence 6 99998753 47999987 58999999999999998764
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.8e-25 Score=214.75 Aligned_cols=357 Identities=10% Similarity=0.011 Sum_probs=218.3
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCc-ccccCcCCChHHHHHHHHHHHhcCc-CCC-CeEEEeCChhhHH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPF-YHSFWNRTTKPSLDLAKELLEMFTA-SKM-AKVFFTNSGSEAN 108 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~-~~~-~~v~~~~sGseA~ 108 (447)
+..++||..+. ..++ .+|++.+++.+++.+... .+....+..+....+++.+.+.+.. ..+ +++++++||++|+
T Consensus 22 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~ 98 (410)
T 3e2y_A 22 DPSVVNLGQGF--PDIS-PPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSL 98 (410)
T ss_dssp STTSEECSSCC--CCSC-CCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred CCCeEEecCCC--CCCC-CCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHH
Confidence 45678887774 3344 689999999999875311 1111111233444455555443321 344 7899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHH
Q 013204 109 DTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188 (447)
Q Consensus 109 ~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (447)
+.+++.+. .++++|++.+++|++........+..... ++........ .....+.+ ..
T Consensus 99 ~~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~-------------~~~~~~~~~g-~~~~~~~~-~~ 155 (410)
T 3e2y_A 99 FNSIQGLV--------DPGDEVIIMVPFYDCYEPMVRMAGAVPVF-------------IPLRSKPTDG-MKWTSSDW-TF 155 (410)
T ss_dssp HHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTCEEEE-------------EECEECCCCS-SCCBGGGE-EC
T ss_pred HHHHHHhc--------CCCCEEEEeCCCchhhHHHHHHcCCEEEE-------------Eecccccccc-ccccccCC-cC
Confidence 99999773 34578999999999886554433221111 1110000000 00000000 00
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-ccccCCC---
Q 013204 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-GCDKYSI--- 264 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~~~~~~~--- 264 (447)
+++++++.+. +++++|++++.++.+|.+ ++.+.+++|+++|++||+++|+||+|+++.+.|... ....+..
T Consensus 156 d~~~l~~~~~----~~~~~v~~~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 230 (410)
T 3e2y_A 156 DPRELESKFS----SKTKAIILNTPHNPLGKV-YTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWE 230 (410)
T ss_dssp CHHHHHTTCC----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGG
T ss_pred CHHHHHhhcC----CCceEEEEeCCCCCCCcC-cCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccC
Confidence 1366666553 357777777777777754 477889999999999999999999999887776432 2222221
Q ss_pred -CCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHH-----h----hhcHH
Q 013204 265 -KPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIY-----K----ERNIV 334 (447)
Q Consensus 265 -~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~-----~----~~~~~ 334 (447)
..++.++||.++.+++|+|++++++++++.+.. .....+++.+++++.++.++++.. . -++..
T Consensus 231 ~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 303 (410)
T 3e2y_A 231 RTITIGSAGKTFSVTGWKLGWSIGPAHLIKHLQT-------VQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLP 303 (410)
T ss_dssp GEEEEEEHHHHSSCGGGCCEEEECCHHHHHHHHH-------HHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHH
T ss_pred eEEEEecchhhcCCCCceEEEEEECHHHHHHHHH-------HHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHH
Confidence 123346899998433899999999999888763 234457778899998888888731 1 12344
Q ss_pred HHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHH-HHcCceEEeeC-------
Q 013204 335 EQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQC-EKHGMLVRVSG------- 406 (447)
Q Consensus 335 ~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~g------- 406 (447)
++++++.+++.+.|+++ ++.......|.++.+++.........-.........+..++ .++||++.++.
T Consensus 304 ~~~~~~~~~l~~~L~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~ 380 (410)
T 3e2y_A 304 KELEVKRDRMVRLLNSV---GLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKS 380 (410)
T ss_dssp HHHHHHHHHHHHHHHTT---TCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTT
T ss_pred HHHHHHHHHHHHHHHHC---CCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCC
Confidence 55566666676666654 33223344566677776542211000000001122455554 56799998742
Q ss_pred -----CEEEEecCCCCCHHHHHHHHHHHHH
Q 013204 407 -----DNIMMSPPFIMSPEEVDELISKYGK 431 (447)
Q Consensus 407 -----~~iR~~~~~~~t~e~i~~~~~~l~~ 431 (447)
+.+|++ +..++++|++++++|++
T Consensus 381 ~~~~~~~iRis--~~~~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 381 KPHFEKLVRFC--FIKKDSTLDAAEEIFRA 408 (410)
T ss_dssp HHHHTTEEEEE--CCCCHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEE--EcCCHHHHHHHHHHHHh
Confidence 569999 66799999999999875
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=217.85 Aligned_cols=339 Identities=12% Similarity=0.080 Sum_probs=216.0
Q ss_pred EEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChh
Q 013204 26 YVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGS 105 (447)
Q Consensus 26 ~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGs 105 (447)
.++|.|++.+.++...++..+++|..++..+.+ .++++++++.+. .+ +.++|++||+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~---------------------~~~~~~l~~~~~-~~-~~v~~~~sgt 61 (379)
T 3ke3_A 5 LRQDIDPNGLLEYSVVYTDRALNHMSKAFQEVM---------------------NDLLSNLKTVYN-AE-AAVIIPGSGT 61 (379)
T ss_dssp ---CCSTTSCCCCCSSCCTTSCCTTSHHHHHHH---------------------HHHHHHHHHHHT-CS-EEEEEESCHH
T ss_pred hhccCCHHHHHHHHHhccCCCCCCCCHHHHHHH---------------------HHHHHHHHHHhC-CC-CEEEEcCChh
Confidence 467889999999876665556677776555332 245556666663 23 5789999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcc-cCCccccCCCCCCCCcceecCCCC----cccCCCCCC
Q 013204 106 EANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASL-SGLPALHQKFDLPAPFVLHTDCPH----YWRYAHPGE 180 (447)
Q Consensus 106 eA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 180 (447)
+|++.+++.+ .++++||+++++||+.....+.. .+... .+..++.+. .+..+.
T Consensus 62 ~a~~~~~~~~---------~~gd~vi~~~~~~~~~~~~~~~~~~g~~~----------~~~~~~~~~~g~~~~~~~~--- 119 (379)
T 3ke3_A 62 YGMEAVARQL---------TIDEDCLIIRNGWFSYRWTQILEKGKFAK----------SSTVLTAERTEDTEAPKPF--- 119 (379)
T ss_dssp HHHHHHHHHH---------CTTCEEEEEECSHHHHHHHHHHHHHCCSS----------EEEEEECEESSCCSSCCCE---
T ss_pred HHHHHHHHhC---------CCCCeEEEEeCCchhHHHHHHHHHhCCCC----------ceEEEeccccccccccCCC---
Confidence 9999988654 34578999999999975443321 11100 001111110 000000
Q ss_pred ChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccc
Q 013204 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCD 260 (447)
Q Consensus 181 ~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~ 260 (447)
...+++++++.+... ++++|++..+++..|. ..+.+++++|+++|++||+++|+||+++ | +..+...
T Consensus 120 -----~~~d~~~l~~~i~~~---~~~~v~~~~~~~~~G~-~~~~~~l~~i~~~~~~~~~~li~D~~~~--g--~~~~~~~ 186 (379)
T 3ke3_A 120 -----APVDIETAVAKIKED---KSAIVYAPHVETSSGI-ILSEEYIKALSEAVHSVGGLLVIDCIAS--G--CVWLDMK 186 (379)
T ss_dssp -----ECCCHHHHHHHHHHH---TCSEEEEESEETTTTE-ECCHHHHHHHHHHHHHTTCEEEEECTTC--T--TCCCCHH
T ss_pred -----CCCCHHHHHHHHhhc---CCcEEEEEeecCCCce-eCCHHHHHHHHHHHHHcCCEEEEEeccc--C--Ccccccc
Confidence 001147788877532 2456777777777774 4567899999999999999999999987 3 2344444
Q ss_pred cCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCcc---------------CcCCCCCCcHHHHHHHHHHH
Q 013204 261 KYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSF---------------SHGFTYSGHPVSCAVAIEAL 325 (447)
Q Consensus 261 ~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~---------------~~~~t~~~~~~~~~aa~a~l 325 (447)
.+++...+.+++|+++++ .++|++++++++++.+.........+ ....+++.++.+++++.+++
T Consensus 187 ~~~~d~~~~s~~K~l~~~-~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal 265 (379)
T 3ke3_A 187 ELGIDVLISAPQKGWSST-PCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAI 265 (379)
T ss_dssp HHTCSEEEECTTTTTCSC-CCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHH
T ss_pred ccCCCEEEecchhhcCCC-CceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHH
Confidence 455433333456999886 57999999999988876421111000 01123467788888888899
Q ss_pred HHHhhh---cHHHHHHHHHHHHHHhHhhccCCCceeeEe-eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCce
Q 013204 326 KIYKER---NIVEQVNKIAPKFQDGVKAFSDSPIIGEIR-GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGML 401 (447)
Q Consensus 326 ~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~ 401 (447)
+.+.+. +..++.+++.+++++.|+++ +..+..... ..+.+..+..... ...+.+.|.++||+
T Consensus 266 ~~~~~~g~~~~~~~~~~l~~~l~~~l~~~-g~~~~~~~~~~~~~i~~~~~~~~-------------~~~~~~~L~~~Gi~ 331 (379)
T 3ke3_A 266 LEAKEIGFDILRDAQWELGNRVRKVLTDK-GIESVAAEGFEAPGVVVSYTERD-------------DMHKGSAFAEAGLQ 331 (379)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSBCTTCBCSSEEEEECSCH-------------HHHSSHHHHHTTCC
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCEecCCccccCceEEEEccCCc-------------chHHHHHHHHCCeE
Confidence 887654 56677788888999988876 322221110 1122222322111 11125678899999
Q ss_pred EEee----------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 402 VRVS----------GDNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 402 ~~~~----------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
+.++ ++.+|++++..+|++||++++++|+++++++.
T Consensus 332 v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 332 IAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEVL 377 (379)
T ss_dssp CEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred EeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence 8875 46799999999999999999999999998764
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-25 Score=213.83 Aligned_cols=316 Identities=14% Similarity=0.118 Sum_probs=208.5
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQ 111 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~A 111 (447)
.++++||+++. +++|+ +|.+ + +..... .+.....++.+.+++++ +.+++++++++|+++|++.+
T Consensus 28 ~~~~i~l~~~~--~~~~~-~~~v--a----~~~~~~------Y~~~~~~~lr~~la~~~-~~~~~~v~~~~G~~~ai~~~ 91 (356)
T 1fg7_A 28 GNGDVWLNANE--YPTAV-EFQL--T----QQTLNR------YPECQPKAVIENYAQYA-GVKPEQVLVSRGADEGIELL 91 (356)
T ss_dssp TTCSEECSSCC--CSSCC-CCCC--C----CCCTTS------CCCSSCHHHHHHHHHHH-TSCGGGEEEESHHHHHHHHH
T ss_pred CCceEEeeCCC--CCCCC-CHhH--h----hhhhcc------CCCccHHHHHHHHHHHh-CCChHHEEEcCCHHHHHHHH
Confidence 35789998876 78886 4555 2 121111 12223567888888887 34567999999999999999
Q ss_pred HHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHH
Q 013204 112 VKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191 (447)
Q Consensus 112 l~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (447)
++.+. ++++++|++.+++||++.......+.... .++..+.+. . +++
T Consensus 92 ~~~~~-------~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~-------------~v~~~~~~~-----~--------d~~ 138 (356)
T 1fg7_A 92 IRAFC-------EPGKDAILYCPPTYGMYSVSAETIGVECR-------------TVPTLDNWQ-----L--------DLQ 138 (356)
T ss_dssp HHHHC-------CTTTCEEEECSSSCTHHHHHHHHHTCEEE-------------ECCCCTTSC-----C--------CHH
T ss_pred HHHHh-------CCCCCEEEEeCCChHHHHHHHHHcCCEEE-------------EeeCCCCCC-----C--------CHH
Confidence 99763 12327899999999998765544322111 111111000 0 125
Q ss_pred HHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccccc-ccCCCCCCeee
Q 013204 192 NLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGC-DKYSIKPDLVS 270 (447)
Q Consensus 192 ~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~-~~~~~~~d~v~ 270 (447)
++++.+. ++++|++++.++.+|.+ .+.+++++|.++|+ ||+++|+||+|++++........ +.++....+.+
T Consensus 139 ~l~~~i~-----~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s 211 (356)
T 1fg7_A 139 GISDKLD-----GVKVVYVCSPNNPTGQL-INPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRT 211 (356)
T ss_dssp HHHTSCT-----TEEEEEEESSCTTTCCC-CCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEE
T ss_pred HHHHHhc-----CCCEEEEeCCCCCCCCC-CCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEec
Confidence 5555442 34566666666666654 57899999999999 99999999999987632111111 21222223447
Q ss_pred ecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh---hhcHHHHHHHHHHHHHHh
Q 013204 271 FAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK---ERNIVEQVNKIAPKFQDG 347 (447)
Q Consensus 271 ~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~---~~~~~~~~~~~~~~l~~~ 347 (447)
+||.++.+++|+|++++++++++.+... ..+++.+++++.++.++|+... -++..++++++++++.+.
T Consensus 212 ~sK~~g~~G~r~G~~~~~~~~~~~l~~~---------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 282 (356)
T 1fg7_A 212 LSKAFALAGLRCGFTLANEEVINLLMKV---------IAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAA 282 (356)
T ss_dssp SSSTTCCGGGCCEEEEECHHHHHHHHHH---------SCSSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhhcCchhhhEEEEeCHHHHHHHHHh---------cCCCCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 8999974348999999999998888642 1345678899988888886432 233456667777777777
Q ss_pred HhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC------CEEEEecCCCCCHHH
Q 013204 348 VKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG------DNIMMSPPFIMSPEE 421 (447)
Q Consensus 348 L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g------~~iR~~~~~~~t~e~ 421 (447)
|+++.. +....++.|.++.+.+. . ...+.++|.++||++.+++ +.+|+++. ++++
T Consensus 283 L~~~~~--~~~~~~~~~~~~~~~~~--~------------~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~---~~~e 343 (356)
T 1fg7_A 283 LKEIPC--VEQVFDSETNYILARFK--A------------SSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG---TREE 343 (356)
T ss_dssp HHHSTT--EEEECCCSSSEEEEEET--T------------HHHHHHHHHHTTEECEECTTSTTCTTEEEEECC---CHHH
T ss_pred HHhCCC--ceEECCCCCeEEEEECC--C------------HHHHHHHHHHCCEEEEECCCCCCCCCeEEEEeC---CHHH
Confidence 776521 12233456777777764 1 3458888999999999832 57999954 7899
Q ss_pred HHHHHHHHHH
Q 013204 422 VDELISKYGK 431 (447)
Q Consensus 422 i~~~~~~l~~ 431 (447)
+++++++|++
T Consensus 344 ~~~~~~~l~~ 353 (356)
T 1fg7_A 344 SQRVIDALRA 353 (356)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999999875
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-26 Score=224.03 Aligned_cols=340 Identities=11% Similarity=0.039 Sum_probs=207.0
Q ss_pred EEeCCCCEEEecCCccccccCC--CCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC-----CCCeEE
Q 013204 27 VYDVNGKKYLDSLAGLWCTALG--GSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS-----KMAKVF 99 (447)
Q Consensus 27 ~~d~dg~~~lD~~~~~~~~~lG--~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~~v~ 99 (447)
+.+..|+.++||.++.+.++.+ +.+|++.+++.+.+.+... +. ..+.....++.+.+++++... +.++++
T Consensus 20 ~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~--y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~ 96 (396)
T 2q7w_A 20 FRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETT-KN--YLGIDGIPEFGRCTQELLFGKGSALINDKRAR 96 (396)
T ss_dssp --------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCC-CC--CCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEE
T ss_pred HhccCCCCceecccccccCCCCCccCcHHHHHHHHhhcCcccc-cC--CCCCCCCHHHHHHHHHHHhcCCCCccccccEE
Confidence 3334567899999987555555 4679999999988764211 11 113334556777777665221 357899
Q ss_pred E--eCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC--CcccC
Q 013204 100 F--TNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP--HYWRY 175 (447)
Q Consensus 100 ~--~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 175 (447)
+ ++||++|++.+++++... .++++|++.+++||++.......+.... .++.. +.+.
T Consensus 97 ~~~~~g~~~a~~~~~~~~~~~------~~gd~Vl~~~p~y~~~~~~~~~~g~~~~-------------~~~~~~~~~~~- 156 (396)
T 2q7w_A 97 TAQTPGGTGALRVAADFLAKN------TSVKRVWVSNPSWPNHKSVFNSAGLEVR-------------EYAYYDAENHT- 156 (396)
T ss_dssp EEEESHHHHHHHHHHHHHHHH------SCCCEEEEEESCCTHHHHHHHHTTCEEE-------------EEECEETTTTE-
T ss_pred EEecccchhhHHHHHHHHHHh------CCCCEEEEcCCCchhHHHHHHHcCCceE-------------EEecccCCCCC-
Confidence 8 999999999999876533 2347899999999998765554332111 11110 0000
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccc-
Q 013204 176 AHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLG- 254 (447)
Q Consensus 176 ~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g- 254 (447)
.+++++++.+....+ .++++++...++.+| ..++.+++++|+++|++||+++|+||+|+++++.|
T Consensus 157 ------------~d~~~l~~~l~~~~~-~~~~v~~~~p~nptG-~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~ 222 (396)
T 2q7w_A 157 ------------LDFDALINSLNEAQA-GDVVLFHGCCHNPTG-IDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLE 222 (396)
T ss_dssp ------------ECHHHHHHHHTTCCT-TCEEEEECSSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHH
T ss_pred ------------cCHHHHHHHHHhCCC-CCEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcc
Confidence 014778887764322 344555444444445 35678999999999999999999999999886653
Q ss_pred -cccccccCCCCCC----eeeecccCCCcccceeEEEe---Chh----HHHHhhhccCCCCccCcCCCCCCcHHHHHHHH
Q 013204 255 -TMFGCDKYSIKPD----LVSFAKALSSAYMPIGAILV---SPE----VSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAI 322 (447)
Q Consensus 255 -~~~~~~~~~~~~d----~v~~sK~l~gg~~~~g~~~~---~~~----~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~ 322 (447)
.......+...+| +.++||.++.+++|+|++++ +++ +++.+.. .........++++++++.
T Consensus 223 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~~ 295 (396)
T 2q7w_A 223 EDAEGLRAFAAMHKELIVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKA-------AIRANYSNPPAHGASVVA 295 (396)
T ss_dssp HHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHH-------HHHTTTSSCCHHHHHHHH
T ss_pred chhHHHHHHHhcCCcEEEEEeccccccccccccceEEEEcCCHHHHHHHHHHHHH-------HHhhccCCCCcHHHHHHH
Confidence 2222222211122 33689999843389999997 553 4444431 011122345888888888
Q ss_pred HHHHHH--------hhhcHHHHHHHHHHHHHHhHhhcc---CCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHH
Q 013204 323 EALKIY--------KERNIVEQVNKIAPKFQDGVKAFS---DSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAY 390 (447)
Q Consensus 323 a~l~~~--------~~~~~~~~~~~~~~~l~~~L~~l~---~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~ 390 (447)
++|+.. .-++..++++++.+++.+.|+++. .... ..+. |.++.+.+. ...
T Consensus 296 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~---~~~~~~~~~~~~~~---------------~~~ 357 (396)
T 2q7w_A 296 TILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSF---IIKQNGMFSFSGLT---------------KEQ 357 (396)
T ss_dssp HHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTH---HHHCCSSEEECCCC---------------HHH
T ss_pred HHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcce---ecCCCceEEEecCC---------------HHH
Confidence 877532 112344566777778888887762 1221 1223 334333221 123
Q ss_pred HHHHHHHcCceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 013204 391 FGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKA 432 (447)
Q Consensus 391 ~~~~l~~~Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~ 432 (447)
+.+.+.++||++.++ +|++++. .+++++++++++|+++
T Consensus 358 ~~~~l~~~gv~v~~~---~Ris~~~-~~~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 358 VLRLREEFGVYAVAS---GRVNVAG-MTPDNMAPLCEAIVAV 395 (396)
T ss_dssp HHHHHHHHCEECCTT---CEEEGGG-CCTTTHHHHHHHHHHH
T ss_pred HHHHHHhcCeeecCC---ceEEEee-cCHHHHHHHHHHHHhc
Confidence 556677899998763 6999774 4999999999999875
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.2e-25 Score=217.28 Aligned_cols=344 Identities=18% Similarity=0.175 Sum_probs=220.7
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHh--cCCcc-----cccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeC
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLN--TLPFY-----HSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTN 102 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~--~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~ 102 (447)
.++..|||+.++ |+.+|++++++.+++. +.... +.......+...++++++++.+. .+.++++|++
T Consensus 20 ~~~~iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~-~~~~~v~~~~ 92 (423)
T 3lvm_A 20 MKLPIYLDYSAT------TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVG-ADPREIVFTS 92 (423)
T ss_dssp CCSSEECBTTTC------CCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHT-CCGGGEEEES
T ss_pred cCCCEeecCCCc------CCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcC-CCCCeEEEeC
Confidence 355689998654 4679999999998887 32111 00001123455778888888873 4566999999
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcc--cCCccccCCCCCCCCcceecCCCCcccCCCCCC
Q 013204 103 SGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASL--SGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE 180 (447)
Q Consensus 103 sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (447)
||++|++.+++.+..+.. .+++.|++..+.|++........ .+... ..++....+.
T Consensus 93 ggt~a~~~a~~~l~~~~~----~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~------------~~v~~~~~~~------ 150 (423)
T 3lvm_A 93 GATESDNLAIKGAANFYQ----KKGKHIITSKTEHKAVLDTCRQLEREGFEV------------TYLAPQRNGI------ 150 (423)
T ss_dssp SHHHHHHHHHHHHHHHHT----TTCCEEEEETTSCHHHHHHHHHHHHTTCEE------------EEECCCTTSC------
T ss_pred ChHHHHHHHHHHHHHhhc----cCCCEEEECCccchHHHHHHHHHHHcCCEE------------EEeccCCCCc------
Confidence 999999999997653211 12578999999998875433221 12111 1122211100
Q ss_pred ChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccc
Q 013204 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCD 260 (447)
Q Consensus 181 ~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~ 260 (447)
.++++|++.+. +++++|+++++++.+|.+.+ +++|.++|++||+++|+||+|++ +.. ...
T Consensus 151 -------~d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~-~~~----~~~ 210 (423)
T 3lvm_A 151 -------IDLKELEAAMR----DDTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQSV-GKL----PID 210 (423)
T ss_dssp -------CCHHHHHHHCC----TTEEEEECCSBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTT-TTS----CCC
T ss_pred -------cCHHHHHHhcC----CCcEEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEEhhhhc-CCC----CcC
Confidence 01367777664 36789999999988888877 99999999999999999999873 322 122
Q ss_pred cCCCCCCeeeec--ccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh--hcHHHH
Q 013204 261 KYSIKPDLVSFA--KALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE--RNIVEQ 336 (447)
Q Consensus 261 ~~~~~~d~v~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~--~~~~~~ 336 (447)
.....+|++++| |.+++ .++|+++++++.++.+..............+.+.++.+++++.++++.+.. ++..++
T Consensus 211 ~~~~~~di~~~s~sK~~g~--~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~ 288 (423)
T 3lvm_A 211 LSQLKVDLMSFSGHKIYGP--KGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMER 288 (423)
T ss_dssp TTTSCCSEEEEESTTTTSC--SSCEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCEEEechHHhcCC--CCeEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233457888765 95543 469999999887665532100000000122445577777777788876654 556677
Q ss_pred HHHHHHHHHHhHhhccCCCceeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee----------
Q 013204 337 VNKIAPKFQDGVKAFSDSPIIGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS---------- 405 (447)
Q Consensus 337 ~~~~~~~l~~~L~~l~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---------- 405 (447)
++++.+++++.|++++...+.... ...+.++.+.+.... ...+.+.|.+ +.+.++
T Consensus 289 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~l~~~l~~--i~v~~g~~~~~~~~~~ 354 (423)
T 3lvm_A 289 LRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVE------------GESLIMALKD--LAVSSGSACTSASLEP 354 (423)
T ss_dssp HHHHHHHHHHHHTTSTTEEEESCSTTBCTTEEEEEETTSC------------HHHHHHHTTT--EECBCCCC-----CCC
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEeCCCC------------HHHHHHHHhh--heeccCccccCCCccc
Confidence 788888888888765322211110 111244455552211 3456666655 555442
Q ss_pred --------------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 406 --------------GDNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 406 --------------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
.+.+|++++..+++++|++++++|+++++++++
T Consensus 355 ~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~~~ 401 (423)
T 3lvm_A 355 SYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRD 401 (423)
T ss_dssp CHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 267999999999999999999999999998875
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-24 Score=208.40 Aligned_cols=339 Identities=16% Similarity=0.143 Sum_probs=226.8
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQ 111 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~A 111 (447)
.+.|+|..+. ++.+|++.+++.+.+.. .+.. ...+...++++++++.+.....+++++++||++|++.+
T Consensus 19 ~~~~l~~~~~------~~~~~~v~~a~~~~~~~--~~~~---~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~ 87 (386)
T 2dr1_A 19 PKYKLFTAGP------VACFPEVLEIMKVQMFS--HRSK---EYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEAS 87 (386)
T ss_dssp CCSEECCSSS------CCCCHHHHHHTTSCCCC--TTSH---HHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHH
T ss_pred ccceeecCCC------cCCcHHHHHHHhccccc--ccCH---HHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHH
Confidence 3568887432 45789998888776543 1111 12456678888888887422246799999999999999
Q ss_pred HHHHHHHHHhcCCCCcceEEEEcCCCccc--hhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHH
Q 013204 112 VKLVWYYNNALGRPNKKKFIARQKSYHGS--TLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189 (447)
Q Consensus 112 l~~~~~~~~~~~~~~~~~vi~~~~~yhg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (447)
++.+. .++++|++.+++||+. ..... ..|... ..++.+..+. . +
T Consensus 88 ~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~-~~g~~~------------~~v~~~~~~~-----~--------d 133 (386)
T 2dr1_A 88 IRNGV--------SKGGKVLVTIIGAFGKRYKEVVE-SNGRKA------------VVLEYEPGKA-----V--------K 133 (386)
T ss_dssp HHHHS--------CTTCEEEEEESSHHHHHHHHHHH-HTTCEE------------EEEECCTTCC-----C--------C
T ss_pred HHHhh--------cCCCeEEEEcCCchhHHHHHHHH-HhCCce------------EEEecCCCCC-----C--------C
Confidence 99763 3357899999999983 22222 122211 1122111000 0 1
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV 269 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v 269 (447)
+++|++.+... +++++|+++++++.+|.+.+ +++|.++|++||+++|+||+|+ +|... .... ...+|++
T Consensus 134 ~~~l~~~l~~~--~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~~--~~~~--~~~~di~ 202 (386)
T 2dr1_A 134 PEDLDDALRKN--PDVEAVTITYNETSTGVLNP----LPELAKVAKEHDKLVFVDAVSA-MGGAD--IKFD--KWGLDVV 202 (386)
T ss_dssp HHHHHHHHHHC--TTCCEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTT-BTTBC--CCTT--TTTCSEE
T ss_pred HHHHHHHHhcC--CCCcEEEEEeecCCcchhCC----HHHHHHHHHHcCCeEEEEcccc-ccCcc--cccc--ccCCcEE
Confidence 47788877541 24667888888888887766 8999999999999999999997 33321 1222 2346888
Q ss_pred eec--ccCCCcccceeEEEeChhHHHHhhhccCC---------CCcc--CcCCCCCCcHHHHHHHHHHHHHHhhh----c
Q 013204 270 SFA--KALSSAYMPIGAILVSPEVSEVIHSQSNT---------LGSF--SHGFTYSGHPVSCAVAIEALKIYKER----N 332 (447)
Q Consensus 270 ~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~~~---------~~~~--~~~~t~~~~~~~~~aa~a~l~~~~~~----~ 332 (447)
++| |.++++ .++|++++++++++.+...... .... ....+++.++++++++.++++.+.+. +
T Consensus 203 ~~s~sK~~~~~-~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~ 281 (386)
T 2dr1_A 203 FSSSQKAFGVP-PGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEK 281 (386)
T ss_dssp EEETTSTTCCC-SSCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred EEeccccccCC-CceEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHH
Confidence 765 999986 3689999999988876321000 0000 01235567888888888889876543 5
Q ss_pred HHHHHHHHHHHHHHhHhhccCCCceeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-----C
Q 013204 333 IVEQVNKIAPKFQDGVKAFSDSPIIGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-----G 406 (447)
Q Consensus 333 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----g 406 (447)
..++++++.+++.+.|+++ +..+.... ...+.++.+.+.... ....+.+.|+++||.+.++ .
T Consensus 282 ~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~gi~v~~~~~~~~~ 349 (386)
T 2dr1_A 282 WLEMYEKRAKMVREGVREI-GLDILAEPGHESPTITAVLTPPGI-----------KGDEVYEAMRKRGFELAKGYGSVKE 349 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCCBSSCTTCBCSSEEEEECCTTC-----------CHHHHHHHHHHTTEECEECCGGGTT
T ss_pred HHHHHHHHHHHHHHHHHHc-CCeeCcCccccCCceEEEEcCCCC-----------CHHHHHHHHHHCCeEEecCccccCC
Confidence 6778888889999988876 33322110 114566667664211 1456888999999999875 3
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013204 407 DNIMMSPPFIMSPEEVDELISKYGKALKATEER 439 (447)
Q Consensus 407 ~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 439 (447)
+.+|++++..++++++++++++|+++++++..+
T Consensus 350 ~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 382 (386)
T 2dr1_A 350 KTFRIGHMGYMKFEDIQEMLDNLREVINELKKQ 382 (386)
T ss_dssp TEEEEECCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 679999988899999999999999999876543
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.3e-25 Score=216.92 Aligned_cols=347 Identities=8% Similarity=0.012 Sum_probs=213.3
Q ss_pred eCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccC-cCCChHHHHHHHHHHHhcC---cCCCCeEEEeCCh
Q 013204 29 DVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFW-NRTTKPSLDLAKELLEMFT---ASKMAKVFFTNSG 104 (447)
Q Consensus 29 d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~---~~~~~~v~~~~sG 104 (447)
+.+|++++||.++. +.-..+|.|.+++.+++++....+... ..+.....++.+.+++++. ....++++|++|+
T Consensus 52 ~~~~~~~i~l~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~ 128 (432)
T 3ei9_A 52 KYPDAQVISLGIGD---TTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGA 128 (432)
T ss_dssp HCTTCCCEECSSCC---CCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCH
T ss_pred cCCCCCeEEccCCC---CCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCCh
Confidence 34688999998883 223479999999999987543211111 1123344567777776641 3466799999999
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhH
Q 013204 105 SEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEE 184 (447)
Q Consensus 105 seA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (447)
++++..+..++ .+++.|++.++.|++.............+.. .......+..+++.....+
T Consensus 129 ~~al~~l~~l~---------~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~--------- 189 (432)
T 3ei9_A 129 KCDISRLQVMF---------GSNVTIAVQDPSYPAYVDSSVIMGQTGQFNT-DVQKYGNIEYMRCTPENGF--------- 189 (432)
T ss_dssp HHHHHHHHHHH---------CTTCCEEEEESCCTHHHHHHHHHTCSCCEET-TTTEETTCEEEECCGGGTT---------
T ss_pred HHHHHHHHHHc---------CCCCEEEEeCCCCHHHHHHHHHcCCcccccc-cccccCceEEeccCcccCC---------
Confidence 99998743333 3457899999999998655544332111000 0000001112222110000
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccC-C
Q 013204 185 YSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKY-S 263 (447)
Q Consensus 185 ~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~-~ 263 (447)
..++++ .+ ++++|+++..++.+| .+++.+.+++|+++|++||+++|+||+|+++...+.......+ +
T Consensus 190 -----~~~l~~-----~~-~~~~v~l~~p~NPtG-~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~ 257 (432)
T 3ei9_A 190 -----FPDLST-----VG-RTDIIFFCSPNNPTG-AAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPG 257 (432)
T ss_dssp -----SCCGGG-----CC-CCSEEEEESSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTT
T ss_pred -----cCChhh-----CC-CCCEEEEeCCCCCCC-CCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCC
Confidence 011221 12 334444444455555 4557888999999999999999999999987554433322222 1
Q ss_pred C---CCCeeeecccCCCcccceeEEEeChhH--------HHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh---
Q 013204 264 I---KPDLVSFAKALSSAYMPIGAILVSPEV--------SEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--- 329 (447)
Q Consensus 264 ~---~~d~v~~sK~l~gg~~~~g~~~~~~~~--------~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--- 329 (447)
. ...+.++||.++.+++++|++++++++ ++.+... ....+++.+++++.++.+++....
T Consensus 258 ~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~ 330 (432)
T 3ei9_A 258 AEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRI-------ICTCFNGASNISQAGALACLTPEGLEA 330 (432)
T ss_dssp GGGTEEEEEESHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHH-------HHHSCCCSCHHHHHHHHHHSSHHHHHH
T ss_pred CCCeEEEEecchhccCCcccceEEEEEChHHhhcchHHHHHHHHHH-------hccccCCCCHHHHHHHHHHHhcccHHH
Confidence 1 122447899997433899999999887 5655421 122345578888888888774211
Q ss_pred hhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHH-cCceEEee---
Q 013204 330 ERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEK-HGMLVRVS--- 405 (447)
Q Consensus 330 ~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~--- 405 (447)
-++..++++++.+++++.|+++ +..+. ....+.++.+.+.... ...+...|++ .||++.++
T Consensus 331 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~~~~~------------~~~~~~~ll~~~gv~v~~g~~f 395 (432)
T 3ei9_A 331 MHKVIGFYKENTNIIIDTFTSL-GYDVY--GGKNAPYVWVHFPNQS------------SWDVFAEILEKTHVVTTPGSGF 395 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCCEE--ECSSSSEEEEECTTSC------------HHHHHHHHHHHHCEECEEGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-Cceec--CCCcceEEEEECCCCC------------HHHHHHHHHHHCCEEEeCchHh
Confidence 2445677788888888888776 22221 1124566667665211 3456677665 59999874
Q ss_pred ----CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 406 ----GDNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 406 ----g~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
.+.+|++ +..++++|++++++|++.-
T Consensus 396 ~~~~~~~iRis--~~~~~e~l~~~l~rl~~~~ 425 (432)
T 3ei9_A 396 GPGGEGFVRVS--AFGHRENILEACRRFKQLY 425 (432)
T ss_dssp CGGGTTEEEEE--CCSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEE--ecCCHHHHHHHHHHHHHHh
Confidence 2679999 6789999999999998653
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-25 Score=217.14 Aligned_cols=343 Identities=9% Similarity=0.032 Sum_probs=214.5
Q ss_pred CCEEEecCCcccc---ccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCC---eEEEeCChh
Q 013204 32 GKKYLDSLAGLWC---TALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMA---KVFFTNSGS 105 (447)
Q Consensus 32 g~~~lD~~~~~~~---~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~---~v~~~~sGs 105 (447)
|+.++||..|... ..+. .+|.+.+++.+........+....+..+....+++.+.... +++ ++++++||+
T Consensus 37 ~~~~i~l~~g~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~---~~~~~~~i~~t~g~~ 112 (418)
T 3rq1_A 37 RENVVNGTLGAIHDEEGNLV-FLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNF---RPEGHIRSIATAGGT 112 (418)
T ss_dssp GGGCEECCSSCCBCTTSCBC-CCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGG---CCSSEEEEEEESHHH
T ss_pred CCCeEECCCCcccCCCCCcc-ccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhccc---CccccccEEECCchH
Confidence 5578888777321 1222 56777777655333211111111223333444444443332 345 999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC-CcccCCCCCCChhH
Q 013204 106 EANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP-HYWRYAHPGETEEE 184 (447)
Q Consensus 106 eA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 184 (447)
+|+..+++.+. .+++.|++.+++|+++.......+.... .+++. ..+. .
T Consensus 113 ~al~~~~~~l~--------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~-------------~v~~~~~~~~-----~---- 162 (418)
T 3rq1_A 113 GGIHHLIHNYT--------EPGDEVLTADWYWGAYRVICSDTGRTLV-------------TYSLFDEHNN-----F---- 162 (418)
T ss_dssp HHHHHHHHHHS--------CTTCEEEEESSCCTHHHHHHHHTTCEEE-------------EECSBCTTSS-----B----
T ss_pred HHHHHHHHHhc--------CCCCEEEECCCCchhHHHHHHHcCCEEE-------------EEeeeCCCCC-----c----
Confidence 99999999763 3357899999999988765544332211 11110 0000 0
Q ss_pred HHHHHHHHHHHHHHhh-CCCcEEEEEEc-cccCCCCCccCChhHHHHHHHHHH------hcCCEEEEehhhcCCCcccc-
Q 013204 185 YSTRLANNLEDLILKE-GPETIAAFIAE-PVIGAGGVIPPPATYFEKVQAVVK------KYDILFIADEVICAFGRLGT- 255 (447)
Q Consensus 185 ~~~~~~~~le~~l~~~-~~~~~a~vi~e-pv~~~~G~~~~~~~~l~~l~~l~~------~~g~~li~DEv~~g~g~~g~- 255 (447)
+++++++.+... .++..++++++ |.++.+|. .++.+.+++|+++|+ +||+++|+||+|.+|++.|.
T Consensus 163 ----d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~-~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~ 237 (418)
T 3rq1_A 163 ----NHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGY-SIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDE 237 (418)
T ss_dssp ----CHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHH
T ss_pred ----CHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHH
Confidence 137777777542 11344455555 52566664 457778999999999 89999999999999987764
Q ss_pred --ccccccCCCCCC---ee--eecccCCCcccceeEEEe---ChhHHHHhhhccCCCCccCcCC-CCCCcHHHHHHHHHH
Q 013204 256 --MFGCDKYSIKPD---LV--SFAKALSSAYMPIGAILV---SPEVSEVIHSQSNTLGSFSHGF-TYSGHPVSCAVAIEA 324 (447)
Q Consensus 256 --~~~~~~~~~~~d---~v--~~sK~l~gg~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~-t~~~~~~~~~aa~a~ 324 (447)
.+.....++.++ ++ ++||.++.+++|+|++++ ++++++.+.... ...... ....+.+++.++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~a~~~~ 313 (418)
T 3rq1_A 238 VRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVN----KSTSRATWSNICRPAMRTMANI 313 (418)
T ss_dssp HHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHH----HHHHHHHTSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHH----HHHHhhccCCCchHHHHHHHHH
Confidence 222334455666 32 689999854489999998 899888876321 000111 234677787777777
Q ss_pred HHHHh--------hhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeee-eEEEEEeecCCCCCCCCCCCcchHHHHHHHH
Q 013204 325 LKIYK--------ERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTG-LILGTEFADNKSPNEPFPPEWGIGAYFGAQC 395 (447)
Q Consensus 325 l~~~~--------~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l 395 (447)
++... ..++.+.++++.+.+.+.|+++ +..+. .+.+ .++.+.+.+ ...+.+.|
T Consensus 314 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~---~~~~~~~~~~~~~~--------------~~~~~~~l 375 (418)
T 3rq1_A 314 VADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQV-GLPML---PYRGGFFITIPTDS--------------ANAICEEL 375 (418)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCC---CCCSSSEEEEECTT--------------HHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCC---CCCceEEEEcCCCC--------------HHHHHHHH
Confidence 64221 1234566777777788888776 33322 2233 333343321 34577889
Q ss_pred HHcCceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 396 EKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 396 ~~~Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.++||++.++++.+|++.. .+++++|++++++|+++++++
T Consensus 376 ~~~gi~v~~g~~~iRis~~-~~~~~~i~~~~~~l~~~l~~~ 415 (418)
T 3rq1_A 376 KKEHIYVIALANGIRIAAC-GIPKCQMTGLAEKIYNAMKSL 415 (418)
T ss_dssp HHTTEECEECSSEEEEEGG-GSCHHHHTTHHHHHHHHHHHT
T ss_pred HhCCEEEecCCCCeEEEEe-cCCHHHHHHHHHHHHHHHHHH
Confidence 9999999998889999943 369999999999999998764
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-24 Score=210.71 Aligned_cols=350 Identities=11% Similarity=0.043 Sum_probs=215.8
Q ss_pred CCEEEecCCccccc-cCCCCCHHHHHHHHHHHhcCCc-ccccCcCCChHHHHHHHHHHHhcC-----------cCCCCeE
Q 013204 32 GKKYLDSLAGLWCT-ALGGSEPRLVAAATAQLNTLPF-YHSFWNRTTKPSLDLAKELLEMFT-----------ASKMAKV 98 (447)
Q Consensus 32 g~~~lD~~~~~~~~-~lG~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~-----------~~~~~~v 98 (447)
.+.++||..+.... +-.+.+|++.+++.+++.+... .+. +.....++.+.+++++. +.+.+++
T Consensus 32 ~~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~----~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v 107 (416)
T 1bw0_A 32 PKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYF----PTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNV 107 (416)
T ss_dssp CSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCC----CTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGE
T ss_pred CCCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcC----CCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceE
Confidence 35789998775432 1124789999999999875321 111 11223445555555442 1356799
Q ss_pred EEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCC
Q 013204 99 FFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHP 178 (447)
Q Consensus 99 ~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (447)
++++||++|++.+++.+. .++++|++.+++||+........ |.... .++....
T Consensus 108 ~~~~g~~~al~~~~~~l~--------~~gd~vl~~~p~y~~~~~~~~~~-g~~~~------------~v~~~~~------ 160 (416)
T 1bw0_A 108 VLCSGGSHGILMAITAIC--------DAGDYALVPQPGFPHYETVCKAY-GIGMH------------FYNCRPE------ 160 (416)
T ss_dssp EEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCTHHHHHHHHT-TCEEE------------EEEEEGG------
T ss_pred EEeCChHHHHHHHHHHhC--------CCCCEEEEcCCCcHhHHHHHHHc-CcEEE------------EeecCcc------
Confidence 999999999999999773 23478999999999986544332 22111 1111000
Q ss_pred CCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc---
Q 013204 179 GETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT--- 255 (447)
Q Consensus 179 ~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~--- 255 (447)
+.+ ..++++|++.+. ++..++++++| ++.+|. ..+.+++++|.++|++||+++|+||+|+++.+.|.
T Consensus 161 ----~~~-~~d~~~l~~~l~---~~~~~v~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~ 230 (416)
T 1bw0_A 161 ----NDW-EADLDEIRRLKD---DKTKLLIVTNP-SNPCGS-NFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPN 230 (416)
T ss_dssp ----GTT-EECHHHHHHHCC---TTEEEEEEESS-CTTTCC-CCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTT
T ss_pred ----cCC-CCCHHHHHHHhc---cCCeEEEEeCC-CCCCCc-ccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCC
Confidence 000 001366776664 23344556666 445554 46789999999999999999999999998866554
Q ss_pred -cc-ccccCCCCCCe---eeecccCCCcccceeEEEeChh--HHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHH
Q 013204 256 -MF-GCDKYSIKPDL---VSFAKALSSAYMPIGAILVSPE--VSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIY 328 (447)
Q Consensus 256 -~~-~~~~~~~~~d~---v~~sK~l~gg~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~ 328 (447)
.+ ....++..+++ .++||.++.+++++|+++++++ +++.+.... .. .+..+++.++++++++.++|+..
T Consensus 231 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~a~~~~l~~~ 306 (416)
T 1bw0_A 231 ATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGL---KR-VGMLVCGPCTVVQAALGEALLNT 306 (416)
T ss_dssp CCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHH---HH-HHHHHTCSCHHHHHHHHHHHHSS
T ss_pred CCccCHHHccCCCcEEEEecchhhCCCCCceEEEEEeeCchhhHHHHHHHH---HH-HhccccCCCcHHHHHHHHHHhcc
Confidence 22 22222222222 2679998755589999998663 433332100 00 01125667889999888888732
Q ss_pred hh---hcHHHHHHHHHHHHHHhHhhccCCCceeeEee-eeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEE
Q 013204 329 KE---RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRG-TGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVR 403 (447)
Q Consensus 329 ~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~ 403 (447)
.. ++..++++++.+++.+.|+++ +.+..+.+ .|.++.+.+....... . .....+.+.|+ ++||.+.
T Consensus 307 ~~~~~~~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~l~~~~gi~v~ 377 (416)
T 1bw0_A 307 PQEHLDQIVAKIEESAMYLYNHIGEC---IGLAPTMPRGAMYLMSRIDLEKYRD-----I-KTDVEFFEKLLEEENVQVL 377 (416)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTS---TTEEECCCCBTTEEEEEECGGGBSS-----C-CSHHHHHHHHHHHHCEECE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhC---CCCcccCCCeeEEEEEeCCHHHcCC-----C-CCHHHHHHHHHHHCCEEEe
Confidence 11 334566677777777777654 22333323 3556666664321000 0 01345777774 8899998
Q ss_pred eeC-----CEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 404 VSG-----DNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 404 ~~g-----~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
++. +.+|+++ ..++++|++++++|.+++++.+
T Consensus 378 ~g~~f~~~~~iRis~--~~~~e~l~~~l~~l~~~l~~~~ 414 (416)
T 1bw0_A 378 PGTIFHAPGFTRLTT--TRPVEVYREAVERIKAFCQRHA 414 (416)
T ss_dssp EGGGGTCTTEEEEEC--CSCHHHHHHHHHHHHHHHHHHB
T ss_pred cccccCCCCeEEEEe--cCCHHHHHHHHHHHHHHHHHhh
Confidence 752 5799996 5789999999999999987643
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.3e-25 Score=214.32 Aligned_cols=337 Identities=11% Similarity=0.057 Sum_probs=212.3
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCc-CCChHHHHHHHHHHHhcC-c-CCCCeEEEeCChhhH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWN-RTTKPSLDLAKELLEMFT-A-SKMAKVFFTNSGSEA 107 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~-~-~~~~~v~~~~sGseA 107 (447)
.|++++||.++.. .++ .+|.+.+++.+++++......... .+.....++.+.+++++. + ...+++++++|++++
T Consensus 31 ~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~a 107 (400)
T 3asa_A 31 PQHTVINLSIGDT--TQP-LNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVD 107 (400)
T ss_dssp TTSCCEECSSCCC--CCC-CCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHH
T ss_pred CCCceEeccCCCC--CCC-CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHH
Confidence 4778999987752 344 689999999998865321101111 123345678888888741 2 356799999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 108 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 108 ~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
++.+++++ .++++|++.+++|++........ |... +..++......+.
T Consensus 108 l~~~~~~~---------~~gd~Vl~~~p~y~~~~~~~~~~-g~~~-----------~~~~~~~~~~~~~----------- 155 (400)
T 3asa_A 108 LFRLLSFF---------GPNQTVAIQDPSYPAYLDIARLT-GAKE-----------IIALPCLQENAFF----------- 155 (400)
T ss_dssp HHHHHHHH---------CSSCEEEEEESCCHHHHHHHHHT-TCSE-----------EEEEECCGGGTTC-----------
T ss_pred HHHHHHHc---------CCCCEEEECCCCcHHHHHHHHHc-CCcc-----------eEecccchhcCcc-----------
Confidence 99876543 23478999999999986443332 2210 0111111100000
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc-ccccccCCCCC
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT-MFGCDKYSIKP 266 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~-~~~~~~~~~~~ 266 (447)
.++++ . +++++|++++.++.+|.+ ++.+.+++|.++|++||+++|+||+|++++..|. ......++..+
T Consensus 156 ---~~l~~----~--~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 225 (400)
T 3asa_A 156 ---PEFPE----D--THIDILCLCSPNNPTGTV-LNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDAR 225 (400)
T ss_dssp ---CCCCT----T--CCCSEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGG
T ss_pred ---cChhh----c--cCccEEEEeCCCCCCCCc-CCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCC
Confidence 01111 0 234556655556666654 5789999999999999999999999998866553 22222222113
Q ss_pred C----eeeecccCCCcccceeEEEeChhH-------HHHhhhccCCCCccCcCCCC-CCcHHHHHHHHHHHHHHhhhcHH
Q 013204 267 D----LVSFAKALSSAYMPIGAILVSPEV-------SEVIHSQSNTLGSFSHGFTY-SGHPVSCAVAIEALKIYKERNIV 334 (447)
Q Consensus 267 d----~v~~sK~l~gg~~~~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~t~-~~~~~~~~aa~a~l~~~~~~~~~ 334 (447)
| +.++||.++.+++|+|++++++++ ++.+... ....++ +.+++++.++.++|+....++..
T Consensus 226 ~~~i~~~s~sK~~g~~GlriG~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 298 (400)
T 3asa_A 226 FCAIEINSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWER-------FLSTTFNGASIPAQEAGVAGLSILPQLEAI 298 (400)
T ss_dssp GTEEEEEECCGGGTTTTCCCEEEECCTTCBCTTSCBHHHHHHH-------HHHHHCCCCCHHHHHHHHHHHHHTTTCHHH
T ss_pred CceEEEecchhhcCCcchheeEEeeChhhccchhhhHHHHHHH-------HhccCccCCChHHHHHHHHHhCcHHHHHHH
Confidence 3 447899997333899999999887 5544311 111233 56888888888888754335567
Q ss_pred HHHHHHHHHHHHhHhhccCCCceeeEee-eeeEEEEE-eecCCCCCCCCCCCcchHHHHHHHHHH-cCceEEee------
Q 013204 335 EQVNKIAPKFQDGVKAFSDSPIIGEIRG-TGLILGTE-FADNKSPNEPFPPEWGIGAYFGAQCEK-HGMLVRVS------ 405 (447)
Q Consensus 335 ~~~~~~~~~l~~~L~~l~~~~~~~~~~~-~g~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~------ 405 (447)
++++++.+++++.|+++ + + ....+ .|.++.+. +..... ...+.+.|++ +||++.++
T Consensus 299 ~~~~~~~~~l~~~L~~~-g--~-~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~gv~v~~g~~f~~~ 363 (400)
T 3asa_A 299 HYYRENSDLLRKALLAT-G--F-EVFGGEHAPYLWVKPTQANIS-----------DRDLFDFFLREYHIAITPGIGFGRS 363 (400)
T ss_dssp HHHHHHHHHHHHHHHHT-T--C-EEEECSSSSEEEEECCCTTCC-----------TTTHHHHHHHHHSEECEEGGGGCGG
T ss_pred HHHHHHHHHHHHHHHHC-C--C-eeeCCCCceEEEEeccCCCCC-----------HHHHHHHHHHhCCEEEeChhHhCCC
Confidence 88888888998888875 2 2 22233 35666777 543211 1126666764 59999875
Q ss_pred -CCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 406 -GDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 406 -g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.+.+|++ +..++++|++++++|++++++.
T Consensus 364 ~~~~iRis--~~~~~e~i~~~l~~l~~~~~~~ 393 (400)
T 3asa_A 364 GSGFVRFS--SLGKREDILAACERLQMAPALQ 393 (400)
T ss_dssp GTTCEEEE--CCSCHHHHHHHHHHHHC-----
T ss_pred CCCEEEEE--eeCCHHHHHHHHHHHHHHHHhh
Confidence 2569999 6789999999999999988654
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-24 Score=210.37 Aligned_cols=331 Identities=13% Similarity=0.104 Sum_probs=222.2
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCC-eEEEeCChhhHHH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMA-KVFFTNSGSEAND 109 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~v~~~~sGseA~~ 109 (447)
+++.|+|..+. ++.+|++.+++.+.+.. .+.. ...+...++++++++.+. .+.+ ++++++||++|++
T Consensus 32 ~~~~~l~~~~~------~~~~~~v~~a~~~~~~~--~~~~---~~~~~~~~~~~~la~~~g-~~~~~~v~~t~g~t~al~ 99 (393)
T 1vjo_A 32 VPSRLLLGPGP------SNAHPSVLQAMNVSPVG--HLDP---AFLALMDEIQSLLRYVWQ-TENPLTIAVSGTGTAAME 99 (393)
T ss_dssp CCCCEECSSSC------CCCCHHHHHHHSSCCCC--TTSH---HHHHHHHHHHHHHHHHHT-CCCSCEEEESSCHHHHHH
T ss_pred CccceeccCCC------CCCCHHHHHHHhccccc--ccCH---HHHHHHHHHHHHHHHHhC-CCCCcEEEEeCchHHHHH
Confidence 45678886433 35789999988876643 1110 123456778888888764 3556 8999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCcc--chhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHG--STLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
.+++.+. .++++|++.+++||+ ....... .|... ..++.+..+.
T Consensus 100 ~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~-~g~~~------------~~v~~~~~~~------------- 145 (393)
T 1vjo_A 100 ATIANAV--------EPGDVVLIGVAGYFGNRLVDMAGR-YGADV------------RTISKPWGEV------------- 145 (393)
T ss_dssp HHHHHHC--------CTTCEEEEEESSHHHHHHHHHHHH-TTCEE------------EEEECCTTCC-------------
T ss_pred HHHHhcc--------CCCCEEEEEcCChhHHHHHHHHHH-cCCce------------EEEecCCCCC-------------
Confidence 9999873 335789999999998 3322221 22111 1122211100
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCC
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPD 267 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d 267 (447)
.++++|++.+... ++++|+++++++.+|.+.+ +++|.++|++||+++|+||+|+ +|... .......+|
T Consensus 146 ~d~~~l~~~l~~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~----~~~~~~~~d 213 (393)
T 1vjo_A 146 FSLEELRTALETH---RPAILALVHAETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LGGVP----IFLDAWGVD 213 (393)
T ss_dssp CCHHHHHHHHHHH---CCSEEEEESEETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TTTSC----CCTTTTTCS
T ss_pred CCHHHHHHHHhhC---CceEEEEeccCCCcceecc----HHHHHHHHHHcCCEEEEECCcc-ccCcC----CcccccCcc
Confidence 0147788877642 3457888888888887765 8999999999999999999998 65432 222234578
Q ss_pred eeeec--ccCCCcccceeEEEeChhHHHHhhhccCCCCccC------------cCCCC-CCcHHHHHHHHHHHHHHhh--
Q 013204 268 LVSFA--KALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFS------------HGFTY-SGHPVSCAVAIEALKIYKE-- 330 (447)
Q Consensus 268 ~v~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~------------~~~t~-~~~~~~~~aa~a~l~~~~~-- 330 (447)
++++| |.+++++ ++|++++++++++.+.........+. ...++ +.++++++++.++++.+.+
T Consensus 214 i~~~s~sK~l~~~~-~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~ 292 (393)
T 1vjo_A 214 LAYSCSQKGLGCSP-GASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEG 292 (393)
T ss_dssp EEECCSSSTTCSCS-SCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEEcCcccccCCC-ceEEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 88755 9999885 99999999999888753210011111 02234 6788888888889987644
Q ss_pred -hcHHHHHHHHHHHHHHhHhhccCCCceeeEee--eeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc-CceEEee-
Q 013204 331 -RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRG--TGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH-GMLVRVS- 405 (447)
Q Consensus 331 -~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~- 405 (447)
++..++++++.+++.+.|+++ +..+... .+ .+.++.+.++... ....+.+.|+++ ||.+.++
T Consensus 293 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~~gi~v~~g~ 359 (393)
T 1vjo_A 293 LANCWQRHQKNVEYLWERLEDI-GLSLHVE-KEYRLPTLTTVCIPDGV-----------DGKAVARRLLNEHNIEVGGGL 359 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCCBSSC-GGGBCSSEEEEECCTTC-----------CHHHHHHHHHHHHCEECEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCcccCC-ccccCCcEEEEEcCCCC-----------CHHHHHHHHHhhCCEEEecCc
Confidence 356778888889999998876 3333221 11 2344555553211 145688889888 9999875
Q ss_pred ----CCEEEEec-CCCCCHHHHHHHHHHHHHHH
Q 013204 406 ----GDNIMMSP-PFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 406 ----g~~iR~~~-~~~~t~e~i~~~~~~l~~~l 433 (447)
.+.+|+++ ++..+++++++++++|++++
T Consensus 360 ~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 360 GELAGKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp GGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 26799995 56678889999999998875
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.5e-24 Score=206.89 Aligned_cols=341 Identities=16% Similarity=0.132 Sum_probs=213.3
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhHHH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEAND 109 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA~~ 109 (447)
+|+.++||..+. ..++ .+|.+.+++.+.++.....++...+..+....+++.+...+. ..+++++++++||++|+.
T Consensus 29 ~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~ 105 (385)
T 1b5p_A 29 QGVDLVALTAGE--PDFD-TPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALF 105 (385)
T ss_dssp TTCCCEECCCSS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEEecCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHH
Confidence 456788987764 2344 478999999988865322222212233444445555544332 135678999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (447)
.+++.+. .++++|++.+++|+++....... |... ..++......+. .+
T Consensus 106 ~~~~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~-g~~~------------~~v~~~~~~~~~-----------~d 153 (385)
T 1b5p_A 106 NLFQAIL--------DPGDEVIVLSPYWVSYPEMVRFA-GGVV------------VEVETLPEEGFV-----------PD 153 (385)
T ss_dssp HHHHHHC--------CTTCEEEEEESCCTHHHHHHHHT-TCEE------------EEEECCGGGTTC-----------CC
T ss_pred HHHHHhc--------CCCCEEEEcCCCchhHHHHHHHc-CCEE------------EEeecCcccCCC-----------CC
Confidence 9998763 33578999999998876444332 2111 111111000000 01
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV 269 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v 269 (447)
++++++.+. ++..++++++|.|++| ...+.+.+++|.++|++||+++|+||+|+.+...|....+..+.-..+++
T Consensus 154 ~~~l~~~l~---~~~~~v~~~~p~NPtG--~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~ 228 (385)
T 1b5p_A 154 PERVRRAIT---PRTKALVVNSPNNPTG--AVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLT 228 (385)
T ss_dssp HHHHHTTCC---TTEEEEEEESSCTTTC--CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEE
T ss_pred HHHHHHhcC---CCCEEEEEeCCCCCCC--CCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEE
Confidence 366666553 2333445556655555 44578999999999999999999999999775444211222221111232
Q ss_pred --eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHH---Hhh--hcHHHHHHHHHH
Q 013204 270 --SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKI---YKE--RNIVEQVNKIAP 342 (447)
Q Consensus 270 --~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~---~~~--~~~~~~~~~~~~ 342 (447)
+|||.++.+++++|++++++++++.+... ....+++.+.+++.++.++|+. ..+ ++..++++++.+
T Consensus 229 ~~s~SK~~~~~G~RiG~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~ 301 (385)
T 1b5p_A 229 VNGAAKAFAMTGWRIGYACGPKEVIKAMASV-------SRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRD 301 (385)
T ss_dssp EEESTTTTTCGGGCCEEEECCHHHHHHHHHH-------HHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEechhhcCCcccceEEEEeCHHHHHHHHHH-------HhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHH
Confidence 68999885448999999999998887632 2224566778888888777753 211 345567777778
Q ss_pred HHHHhHhhccCCCceeeEeeee-eEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-----CEEEEecCCC
Q 013204 343 KFQDGVKAFSDSPIIGEIRGTG-LILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-----DNIMMSPPFI 416 (447)
Q Consensus 343 ~l~~~L~~l~~~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-----~~iR~~~~~~ 416 (447)
++.+.|+++ +..+. ...+ .++.+.+.... . ....+.+.|+++||.+.++. +.+|++ +.
T Consensus 302 ~l~~~L~~~-g~~~~---~~~~~~~~~~~~~~~~-~---------~~~~l~~~l~~~gv~v~~g~~f~~~~~iRis--~~ 365 (385)
T 1b5p_A 302 LLLEGLTAL-GLKAV---RPSGAFYVLMDTSPIA-P---------DEVRAAERLLEAGVAVVPGTDFAAFGHVRLS--YA 365 (385)
T ss_dssp HHHHHHHHH-TCCBC---CCSBTTEEEEECTTTC-S---------SHHHHHHHHHHTTEECEESGGGTCTTEEEEE--CC
T ss_pred HHHHHHHHC-CCeec---CCCeeEEEEEecCCCC-C---------CHHHHHHHHHHCCeEEecccccCCCCeEEEE--ec
Confidence 888888776 32221 2233 34444543111 0 14568888889999998752 579999 45
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 013204 417 MSPEEVDELISKYGKALK 434 (447)
Q Consensus 417 ~t~e~i~~~~~~l~~~l~ 434 (447)
+++++|++++++|+++++
T Consensus 366 ~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 366 TSEENLRKALERFARVLG 383 (385)
T ss_dssp SCHHHHHHHHHHGGGGC-
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 899999999999987764
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-25 Score=214.80 Aligned_cols=330 Identities=13% Similarity=0.122 Sum_probs=220.2
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCC---c--ccccCcCCChHHHHHHHH-HHHhcCcCCCCeEEEeCChhh
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP---F--YHSFWNRTTKPSLDLAKE-LLEMFTASKMAKVFFTNSGSE 106 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~--~~~~~~~~~~~~~~l~~~-l~~~~~~~~~~~v~~~~sGse 106 (447)
-.|+|+.+ +.++.+|++.+++.+.+.... + .+.....+.+...+++++ +++++. .+ .+++++||++
T Consensus 9 ~i~ld~~~-----~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~-~~--~v~~~~g~t~ 80 (371)
T 2e7j_A 9 FINIDPLQ-----TGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLG-CD--VARVTNGARE 80 (371)
T ss_dssp CEECCHHH-----HTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTT-SS--EEEEESSHHH
T ss_pred cEEecccc-----cCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcC-CC--EEEEeCChHH
Confidence 45677632 345678999999999876532 1 111112355677889999 999873 22 8999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecC--CCCcccCCCCCCChhH
Q 013204 107 ANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTD--CPHYWRYAHPGETEEE 184 (447)
Q Consensus 107 A~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 184 (447)
|++.+++.+. .++++|++.+++||+....... .|.. +..++ ....+. .
T Consensus 81 a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~-~g~~------------~~~v~~~~~~~~~-----~---- 130 (371)
T 2e7j_A 81 AKFAVMHSLA--------KKDAWVVMDENCHYSSYVAAER-AGLN------------IALVPKTDYPDYA-----I---- 130 (371)
T ss_dssp HHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHHH-TTCE------------EEEECCCCTTTCC-----C----
T ss_pred HHHHHHHHHh--------CCCCEEEEccCcchHHHHHHHH-cCCe------------EEEeecccCCCCC-----c----
Confidence 9999999873 3457899999999988655332 2221 11122 111000 0
Q ss_pred HHHHHHHHHHHHHHhhCC-CcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCC
Q 013204 185 YSTRLANNLEDLILKEGP-ETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYS 263 (447)
Q Consensus 185 ~~~~~~~~le~~l~~~~~-~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~ 263 (447)
++++|++.+..... +++++|+++++++.+|.+.+ +++|.++|++||+++|+||+|+.+ ..+ .....+
T Consensus 131 ----d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~li~D~a~~~~-~~~--~~~~~~- 198 (371)
T 2e7j_A 131 ----TPENFAQTIEETKKRGEVVLALITYPDGNYGNLPD----VKKIAKVCSEYDVPLLVNGAYAIG-RMP--VSLKEI- 198 (371)
T ss_dssp ----CHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTTBT-TBC--CCHHHH-
T ss_pred ----CHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCC----HHHHHHHHHHcCCeEEEECccccC-CCC--CChhhc-
Confidence 14778887764321 35778999999888888776 799999999999999999999843 332 122222
Q ss_pred CCCCeee--ecccCCCcccceeEEEeChhHHHH-hhhccCCCCccCcCC-----CCCCcHHHHHHHHHHHHHHhhhcHHH
Q 013204 264 IKPDLVS--FAKALSSAYMPIGAILVSPEVSEV-IHSQSNTLGSFSHGF-----TYSGHPVSCAVAIEALKIYKERNIVE 335 (447)
Q Consensus 264 ~~~d~v~--~sK~l~gg~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~-----t~~~~~~~~~aa~a~l~~~~~~~~~~ 335 (447)
.+|+++ ++|.++++ .++|++++++++++. +..... . ... +++.++..++++.++++.+.. ++.+
T Consensus 199 -~~di~~~s~sK~~~~~-~~~G~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~ 270 (371)
T 2e7j_A 199 -GADFIVGSGHKSMAAS-GPIGVMGMKEEWAEIVLRRSEK---Y--KNKEVELLGCTARGATIITLMASFPHVRE-RIKR 270 (371)
T ss_dssp -TCSEEEEEHHHHSSCC-SSCEEEEECTTTTTTTTCBCSS---C--TTSBGGGTTCCCCSHHHHHHHHHHHHHHH-HGGG
T ss_pred -CCCEEEecCCcCCCCC-CCcEEEEEechhhhhhcccccc---C--cccccccccCCcCHHHHHHHHHHHHHHHH-HHHH
Confidence 367765 58999988 599999999988776 642110 0 011 455677778878788887655 5667
Q ss_pred HH--HHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEe--------e
Q 013204 336 QV--NKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV--------S 405 (447)
Q Consensus 336 ~~--~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~--------~ 405 (447)
++ +++.+++++.|+++ +..+.....+.+.++.+.+. . ...+.+.|.++||.+.+ +
T Consensus 271 ~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~--~------------~~~~~~~l~~~gi~~~~~~~~~~~~g 335 (371)
T 2e7j_A 271 WDEEVEKARRFAAEMEKL-GIKQLGDNPHNHDLMFFHAE--V------------LYEISKKAKGGRFFLYRELKSRKIHG 335 (371)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCEEESSSSCCSSEEEEECH--H------------HHHHHHHSSSGGGHHHHHHHHTTEEC
T ss_pred HHHHHHHHHHHHHHHHHc-CcEEecCCCccCceEEEECC--C------------HHHHHHHHHHCCEEEEeccccccccC
Confidence 77 88888888888876 33222211113566677664 1 34577888888988765 1
Q ss_pred --CCEEE-EecCCC-CCHHHHHHHHHHHHHHHHH
Q 013204 406 --GDNIM-MSPPFI-MSPEEVDELISKYGKALKA 435 (447)
Q Consensus 406 --g~~iR-~~~~~~-~t~e~i~~~~~~l~~~l~~ 435 (447)
.+.+| ++++.. ++++++++++++|++++++
T Consensus 336 ~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~ 369 (371)
T 2e7j_A 336 IKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEK 369 (371)
T ss_dssp SCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEeeccCCCHHHHHHHHHHHHHHHHh
Confidence 35689 998877 8999999999999998865
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.9e-24 Score=206.26 Aligned_cols=322 Identities=15% Similarity=0.113 Sum_probs=216.6
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCC--CeEEEeCChhhHHHHHHHHHHHHHHhcCCCCc
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKM--AKVFFTNSGSEANDTQVKLVWYYNNALGRPNK 127 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~ 127 (447)
.+|++++++.+++.... . ....+...++++++++.+. .+. +++++++||++|++ +++.+. .++
T Consensus 13 ~~~~v~~a~~~~~~~~~-~----~~~~~~~~~~~~~la~~~~-~~~~~~~v~~~~g~t~al~-~~~~~~--------~~g 77 (384)
T 3zrp_A 13 IKEDVLVAGLENNVGFT-S----KEFVEALAYSLKGLRYVMG-ASKNYQPLIIPGGGTSAME-SVTSLL--------KPN 77 (384)
T ss_dssp CCHHHHHHTTCCSCCTT-S----HHHHHHHHHHHHHHHHHHT-CCTTSEEEEEESCHHHHHH-HGGGGC--------CTT
T ss_pred CCHHHHHHhhccccccc-c----HHHHHHHHHHHHHHHHHhC-CCCCCcEEEEcCCcHHHHH-HHHhhc--------CCC
Confidence 57888888776553211 0 1124556778888888874 344 78999999999999 887553 345
Q ss_pred ceEEEEcCCCccchhhhh-cccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEE
Q 013204 128 KKFIARQKSYHGSTLIAA-SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIA 206 (447)
Q Consensus 128 ~~vi~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a 206 (447)
++|++.++.||+.....+ ...|.. +..++.+..+. .+++++++.+.. .+++
T Consensus 78 d~vi~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~-------------~d~~~l~~~i~~---~~~~ 129 (384)
T 3zrp_A 78 DKILVVSNGVFGDRWEQIFKRYPVN------------VKVLRPSPGDY-------------VKPGEVEEEVRK---SEYK 129 (384)
T ss_dssp CEEEEECSSHHHHHHHHHHTTSSCE------------EEEECCSTTCC-------------CCHHHHHHHHHH---SCEE
T ss_pred CEEEEecCCcchHHHHHHHHHcCCc------------EEEecCCCCCC-------------CCHHHHHHHHHh---CCCc
Confidence 789999999998643332 222221 11222211110 014778888864 2478
Q ss_pred EEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec--ccCCCcccceeE
Q 013204 207 AFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMPIGA 284 (447)
Q Consensus 207 ~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l~gg~~~~g~ 284 (447)
+|+++++++.+|.+.+ +++|.++|++||+++|+||+|+ ++.. .... ....+|++++| |.++++ .++|+
T Consensus 130 ~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~--~~~~--~~~~~d~~~~s~~K~~~~~-~g~g~ 199 (384)
T 3zrp_A 130 LVALTHVETSTGVREP----VKDVINKIRKYVELIVVDGVSS-VGAE--EVKA--EEWNVDVYLTASQKALGSA-AGLGL 199 (384)
T ss_dssp EEEEESEETTTTEECC----HHHHHHHHGGGEEEEEEECTTT-TTTS--CCCT--TTTTCSEEEEETTSTTCCC-SSEEE
T ss_pred EEEEeCCCCCCceECc----HHHHHHHHHhcCCEEEEECccc-ccCc--cccc--cccCCCEEEecCcccccCC-CceEE
Confidence 8899998888887776 9999999999999999999997 3322 1111 22346877655 999876 68999
Q ss_pred EEeChhHHHHh-hhccCCC------------CccC--cCCCC-CCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHH
Q 013204 285 ILVSPEVSEVI-HSQSNTL------------GSFS--HGFTY-SGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQ 345 (447)
Q Consensus 285 ~~~~~~~~~~~-~~~~~~~------------~~~~--~~~t~-~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~ 345 (447)
+++++++++.+ ....... ..+. ....+ +.++.++++..++++.+.. ++..++++++.+++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~ 279 (384)
T 3zrp_A 200 LLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIR 279 (384)
T ss_dssp EEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred EEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 99999988776 2100000 0000 11223 4566677777777776654 356778888888999
Q ss_pred HhHhhccCCCceeeE--eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC----CEEEEecCCCCCH
Q 013204 346 DGVKAFSDSPIIGEI--RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG----DNIMMSPPFIMSP 419 (447)
Q Consensus 346 ~~L~~l~~~~~~~~~--~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g----~~iR~~~~~~~t~ 419 (447)
+.|+++ +..+.... ...+.++.+.+... ....+.+.|.++||.+.++. +.+|++++..+++
T Consensus 280 ~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~ 346 (384)
T 3zrp_A 280 AGLEAL-GLEIVARRPESYSNTVTGVILKVA------------DPQKVLAGTVNEGVEFAPGVHPAFKYFRIGHMGWVTP 346 (384)
T ss_dssp HHHHHT-TCCBSCSSGGGBCSSEEEEECSSS------------CHHHHHHHHHTTTCCCEECCCTTCCEEEEECCSSCCH
T ss_pred HHHHHC-CCeEccCcccccCccEEEEECCCC------------CHHHHHHHHHHCCEEEecCCCCCcCEEEEeccccCCH
Confidence 988876 33322211 12345556665431 14568899999999999876 7799999988999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013204 420 EEVDELISKYGKALKATE 437 (447)
Q Consensus 420 e~i~~~~~~l~~~l~~~~ 437 (447)
+++++++++|++++++++
T Consensus 347 e~i~~~~~~l~~~l~~~~ 364 (384)
T 3zrp_A 347 NDAIIAISVIERTLRKLG 364 (384)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 999999999999998764
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-25 Score=217.28 Aligned_cols=339 Identities=11% Similarity=0.046 Sum_probs=214.0
Q ss_pred CCCEEEecCCccccccCC--CCCHHHHHHHHHHHhcCC-cccccCcCCChHHHHHHHHHHHhcCcC--CCCeEEE--eCC
Q 013204 31 NGKKYLDSLAGLWCTALG--GSEPRLVAAATAQLNTLP-FYHSFWNRTTKPSLDLAKELLEMFTAS--KMAKVFF--TNS 103 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG--~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~v~~--~~s 103 (447)
.+..++||+++...++.+ +.+|.+.+++.+.+++.. ..+. +.....++.+.+++++... ..++++| ++|
T Consensus 24 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~----~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g 99 (394)
T 2ay1_A 24 PRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYA----GLSGEPEFQKAMGELILGDGLKSETTATLATVG 99 (394)
T ss_dssp CCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCC----CSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEH
T ss_pred CCccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCC----CCCCcHHHHHHHHHHHhCCCCCcccEEEEecCC
Confidence 466789999886544445 568999999998876421 1111 2223456666666664222 5678999 999
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC--CcccCCCCCCC
Q 013204 104 GSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP--HYWRYAHPGET 181 (447)
Q Consensus 104 GseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 181 (447)
|++|++.++++++.. .++++|++.+++||++.......+.... .++.. +.+.
T Consensus 100 ~~~a~~~~~~~~~~~------~~gd~vl~~~p~~~~~~~~~~~~g~~~~-------------~~~~~~~~~~~------- 153 (394)
T 2ay1_A 100 GTGALRQALELARMA------NPDLRVFVSDPTWPNHVSIMNFMGLPVQ-------------TYRYFDAETRG------- 153 (394)
T ss_dssp HHHHHHHHHHHHHHH------CTTCCEEEEESCCHHHHHHHHHHTCCEE-------------EEECEETTTTE-------
T ss_pred chhHHHHHHHHHHhc------CCCCEEEEcCCCChhHHHHHHHcCCceE-------------EEecccccCCc-------
Confidence 999999999987543 2346899999999998765544332211 11110 0000
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccc--ccccc
Q 013204 182 EEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLG--TMFGC 259 (447)
Q Consensus 182 ~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g--~~~~~ 259 (447)
.+++++++.+.... ..++++++++.++.+|. .++.+++++|.++|++||+++|+||+|+++++.| .....
T Consensus 154 ------~d~~~l~~~l~~~~-~~~~~~~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~ 225 (394)
T 2ay1_A 154 ------VDFEGMKADLAAAK-KGDMVLLHGCCHNPTGA-NLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGT 225 (394)
T ss_dssp ------ECHHHHHHHHHTCC-TTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHH
T ss_pred ------cCHHHHHHHHHhCC-CCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHH
Confidence 01377888776432 23556666666666664 5678999999999999999999999999887653 11122
Q ss_pred ccC-CCCCCee---eecccCCCcccceeEEEe---ChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHH----
Q 013204 260 DKY-SIKPDLV---SFAKALSSAYMPIGAILV---SPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIY---- 328 (447)
Q Consensus 260 ~~~-~~~~d~v---~~sK~l~gg~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~---- 328 (447)
..+ ...++++ ++||.++.+++|+|++++ ++++++.+...- .......+...++++++++.++|+..
T Consensus 226 ~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~ 302 (394)
T 2ay1_A 226 RLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAM---AFLNRQTYSFPPFHGAKIVSTVLTTPELRA 302 (394)
T ss_dssp HHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHH---HHHHHTTTSSCCCHHHHHHHHHHHSHHHHH
T ss_pred HHHhhcCCCEEEEEeccCCCcCcCCccceEEEEeCCHHHHHHHHHHH---HHHHhhhcCCCChHHHHHHHHHhcChHHHH
Confidence 211 1224433 689999833389999998 676544432100 00011122234788888888887643
Q ss_pred ----hhhcHHHHHHHHHHHHHHhHhhcc---CCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCc
Q 013204 329 ----KERNIVEQVNKIAPKFQDGVKAFS---DSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGM 400 (447)
Q Consensus 329 ----~~~~~~~~~~~~~~~l~~~L~~l~---~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 400 (447)
..++..++++++.+++.+.|+++. .... ..+. |.++.+.+. ...+.+.+.++||
T Consensus 303 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~---~~~~~g~~~~~~~~---------------~~~~~~~l~~~gi 364 (394)
T 2ay1_A 303 DWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGF---VAEHRGMFSRLGAT---------------PEQVKRIKEEFGI 364 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTH---HHHCCSSEEECCCC---------------HHHHHHHHHHHCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeE---EcCCceEEEeeCCC---------------HHHHHHHHHhCCE
Confidence 123456677777788888887662 1221 1222 444444332 1246667778999
Q ss_pred eEEeeCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 013204 401 LVRVSGDNIMMSPPFIMSPEEVDELISKYGKA 432 (447)
Q Consensus 401 ~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~ 432 (447)
++.++ +|++++ .++++++++++++|+++
T Consensus 365 ~v~~~---~Ris~~-~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 365 YMVGD---SRINIA-GLNDNTIPILARAIIEV 392 (394)
T ss_dssp ECCTT---CEEEGG-GCCTTTHHHHHHHHHHH
T ss_pred EecCC---CeEEee-cCCHhhHHHHHHHHHHc
Confidence 98763 699977 47999999999999875
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=6.6e-24 Score=208.88 Aligned_cols=337 Identities=16% Similarity=0.145 Sum_probs=224.0
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCccccc--C--cCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhh
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSF--W--NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSE 106 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~--~--~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGse 106 (447)
+|..|+|+.+. |+.+|++.+++.+++.+....+.. . ....+...++++++++.+. .+.++++|++||++
T Consensus 27 ~~~~yld~~~~------~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g-~~~~~v~~~~g~t~ 99 (416)
T 1qz9_A 27 EGVIYLDGNSL------GARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIG-ARDGEVVVTDTTSI 99 (416)
T ss_dssp TTCEECCTTTS------CCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTT-CCTTSEEECSCHHH
T ss_pred CCeEeecCCCc------CCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcC-CCcccEEEeCChhH
Confidence 57899998533 568899999999998753111110 0 0123566789999998873 35578999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhc-c---c--CCccccCCCCCCCCcceecCCCCcccCCCCCC
Q 013204 107 ANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAAS-L---S--GLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE 180 (447)
Q Consensus 107 A~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~-~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (447)
+++.+++.++..... +.++ +++|++++.+|+....++. . . |.. +..++.
T Consensus 100 al~~al~~~~~~~~~-~~~g-d~vii~~~~~~~~~~~~~~~~~~~~~~g~~------------~~~v~~----------- 154 (416)
T 1qz9_A 100 NLFKVLSAALRVQAT-RSPE-RRVIVTETSNFPTDLYIAEGLADMLQQGYT------------LRLVDS----------- 154 (416)
T ss_dssp HHHHHHHHHHHHHHH-HSTT-CCEEEEETTSCHHHHHHHHHHHHHHCSSCE------------EEEESS-----------
T ss_pred HHHHHHHhhcccccc-cCCC-CcEEEEcCCCCCchHHHHHHHHHHhcCCce------------EEEeCc-----------
Confidence 999999876422100 0133 4567778888886443321 1 0 111 111221
Q ss_pred ChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccc
Q 013204 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCD 260 (447)
Q Consensus 181 ~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~ 260 (447)
+++|++.+. +++++|+++++++.+|.+.+ +++|.++|++||+++|+||+|+ +|... ....
T Consensus 155 ---------~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~ 214 (416)
T 1qz9_A 155 ---------PEELPQAID----QDTAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHS-AGAVP--VDLH 214 (416)
T ss_dssp ---------GGGHHHHCS----TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCHH
T ss_pred ---------HHHHHHHhC----CCceEEEEeccccCcccccC----HHHHHHHHHHcCCEEEEEcccc-ccCcC--CChh
Confidence 156776664 35788999999888888776 8999999999999999999997 54432 1122
Q ss_pred cCCCCCCeeee--cccCCCcccce-eEEEeChhHHHHhhhccCCC-Cc---------c------CcCCCCCCcHHHHHHH
Q 013204 261 KYSIKPDLVSF--AKALSSAYMPI-GAILVSPEVSEVIHSQSNTL-GS---------F------SHGFTYSGHPVSCAVA 321 (447)
Q Consensus 261 ~~~~~~d~v~~--sK~l~gg~~~~-g~~~~~~~~~~~~~~~~~~~-~~---------~------~~~~t~~~~~~~~~aa 321 (447)
. ..+|++++ +|.+++| .++ |++++++++++.+....... +. + ......+.++.+++++
T Consensus 215 ~--~~~d~~~~s~~K~l~~g-~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 291 (416)
T 1qz9_A 215 Q--AGADYAIGCTYKYLNGG-PGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMV 291 (416)
T ss_dssp H--HTCSEEEECSSSTTCCC-TTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHH
T ss_pred h--cCCCEEEecCcccCCCC-CCCeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHH
Confidence 2 23788876 5998766 687 99999998876654210000 00 0 0112335677888888
Q ss_pred HHHHHHHhh---hcHHHHHHHHHHHHHHhHhhc-c--CCCceeeEe--eeeeEEEEEeecCCCCCCCCCCCcchHHHHHH
Q 013204 322 IEALKIYKE---RNIVEQVNKIAPKFQDGVKAF-S--DSPIIGEIR--GTGLILGTEFADNKSPNEPFPPEWGIGAYFGA 393 (447)
Q Consensus 322 ~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l-~--~~~~~~~~~--~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 393 (447)
.++++.+.+ +++.++++++++++++.|+++ + +..+..... ..+.++.+.+.+ ...+.+
T Consensus 292 ~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------------~~~l~~ 357 (416)
T 1qz9_A 292 ECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE--------------GYAVIQ 357 (416)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT--------------HHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecCC--------------HHHHHH
Confidence 888887754 346778888888999888775 3 332221110 134566665532 345888
Q ss_pred HHHHcCceEEee-CCEEEEecC-CCCCHHHHHHHHHHHHHHHHHH
Q 013204 394 QCEKHGMLVRVS-GDNIMMSPP-FIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 394 ~l~~~Gi~~~~~-g~~iR~~~~-~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.|.++||.+... .+.+|++++ +.++++++++++++|++++++.
T Consensus 358 ~l~~~gi~~~~~~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~~ 402 (416)
T 1qz9_A 358 ALIDRGVIGDYREPRIMRFGFTPLYTTFTEVWDAVQILGEILDRK 402 (416)
T ss_dssp HHHTTTEECEEETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCcEeccCCCCeEEEeCcccCCCHHHHHHHHHHHHHHHhcc
Confidence 899999998764 467999987 6899999999999999998764
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.92 E-value=5e-24 Score=209.08 Aligned_cols=342 Identities=14% Similarity=0.085 Sum_probs=216.1
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhc-CCccccc--CcCCChHHHHHH----HHHHHhcCcCCCCeEEEeCChh
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNT-LPFYHSF--WNRTTKPSLDLA----KELLEMFTASKMAKVFFTNSGS 105 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~~~~~~--~~~~~~~~~~l~----~~l~~~~~~~~~~~v~~~~sGs 105 (447)
++|+|+.++.. ++ +|++.+++.+++.+ ....++. .....+....++ +++++.+. .+. ..+++++|+
T Consensus 23 ~~~i~~~~~~~--~~---~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g-~~~-~~i~~~sGt 95 (407)
T 2dkj_A 23 REGLELIASEN--FV---SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFG-AAW-ANVQPHSGS 95 (407)
T ss_dssp HTSEECCTTCC--CC---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT-CSE-EECCCSSHH
T ss_pred hcceeeccCCC--CC---CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhC-CCc-ceEEecchH
Confidence 46899987763 33 89999999998864 2222211 110122222222 36777763 232 335667899
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccch--hhhhcccCCccccCCCCCCCCcceecCCC-CcccCCCCCCCh
Q 013204 106 EANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGST--LIAASLSGLPALHQKFDLPAPFVLHTDCP-HYWRYAHPGETE 182 (447)
Q Consensus 106 eA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 182 (447)
+|++.+++.+. .++++|++.+++|++.. ...+...|.... ....+.. +.+.
T Consensus 96 ~a~~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~----------~~~~~~~~~~~~-------- 149 (407)
T 2dkj_A 96 QANMAVYMALM--------EPGDTLMGMDLAAGGHLTHGSRVNFSGKLYK----------VVSYGVRPDTEL-------- 149 (407)
T ss_dssp HHHHHHHHHHC--------CTTCEEEEECGGGTCCGGGTCTTSHHHHHSE----------EEEECCCTTTSS--------
T ss_pred HHHHHHHHHhc--------CCCCEEEEecccccCccchHHHHHhcCceEE----------EEecCCCcccCc--------
Confidence 99999999873 33578999999998773 122111111000 0011100 0000
Q ss_pred hHHHHHHHHHHHHHHHhhCCCcEEEEEE-ccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcC-CCccccccccc
Q 013204 183 EEYSTRLANNLEDLILKEGPETIAAFIA-EPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA-FGRLGTMFGCD 260 (447)
Q Consensus 183 ~~~~~~~~~~le~~l~~~~~~~~a~vi~-epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g-~g~~g~~~~~~ 260 (447)
.+++++++.+... ++++|++ +|.++ ...+ +++|.++|++||+++|+||+|++ +...|....
T Consensus 150 -----~d~~~l~~~l~~~---~~~~v~~~~p~~~---~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~-- 212 (407)
T 2dkj_A 150 -----IDLEEVRRLALEH---RPKVIVAGASAYP---RFWD----FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPN-- 212 (407)
T ss_dssp -----CCHHHHHHHHHHH---CCSEEEECCSSCC---SCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCC--
T ss_pred -----cCHHHHHHHHhhc---CCeEEEEeccccC---CCCC----HHHHHHHHHHcCCEEEEEccccccccccCccCC--
Confidence 0147788877632 2345555 67775 3333 89999999999999999999984 322332211
Q ss_pred cCCCCCCee--eecccCCCcccceeEEEeC-hhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh---hcHH
Q 013204 261 KYSIKPDLV--SFAKALSSAYMPIGAILVS-PEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE---RNIV 334 (447)
Q Consensus 261 ~~~~~~d~v--~~sK~l~gg~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~---~~~~ 334 (447)
... .+|++ +++|+++| +++|+++++ +++++.+.... ..+.+.+.++..++++.++++.+.. ++..
T Consensus 213 ~~~-~~di~~~s~sK~l~g--~~~G~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~ 283 (407)
T 2dkj_A 213 PLP-YAHVVTSTTHKTLRG--PRGGLILSNDPELGKRIDKLI------FPGIQGGPLEHVIAGKAVAFFEALQPEFKEYS 283 (407)
T ss_dssp CTT-TCSEEEEESSGGGCC--CSCEEEEESCHHHHHHHHHHH------TTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred ccc-cccEEEEeccccCCC--CCceEEEECCHHHHHHHHhhh------cccccCCCcHHHHHHHHHHHHHHHHhhHHHHH
Confidence 111 26877 67899986 467999999 78888776421 1223445677777677777876533 4567
Q ss_pred HHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee---------
Q 013204 335 EQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS--------- 405 (447)
Q Consensus 335 ~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--------- 405 (447)
++++++.+++++.|+++ +..+... ++.+.++.+.+..... ....+.+.|.++||.+.++
T Consensus 284 ~~~~~~~~~l~~~L~~~-g~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~gi~v~~~~~~~~~~~~ 351 (407)
T 2dkj_A 284 RLVVENAKRLAEELARR-GYRIVTG-GTDNHLFLVDLRPKGL----------TGKEAEERLDAVGITVNKNAIPFDPKPP 351 (407)
T ss_dssp HHHHHHHHHHHHHHHHT-TCEEGGG-SCSSSEEEEECGGGTC----------CHHHHHHHHHHTTEECEECCCTTCSSCT
T ss_pred HHHHHHHHHHHHHHHhC-CceeecC-CCCceEEEEECcccCC----------CHHHHHHHHHHcCceecCCcCccccccc
Confidence 78888888888888876 3322211 3457777777764210 1446788899999998874
Q ss_pred --CCEEEEecCC----CCCHHHHHHHHHHHHHHHHH-----HHHHHHHhhh
Q 013204 406 --GDNIMMSPPF----IMSPEEVDELISKYGKALKA-----TEERVKELKS 445 (447)
Q Consensus 406 --g~~iR~~~~~----~~t~e~i~~~~~~l~~~l~~-----~~~~~~~~~~ 445 (447)
.+.+|++++. .++++++++++++|++++++ +++++..+.+
T Consensus 352 ~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 402 (407)
T 2dkj_A 352 RVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLEGPSEALREEVRRLAL 402 (407)
T ss_dssp TTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred cCCCceeeecccccccCCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 2469999765 38999999999999999988 7777666544
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=5.2e-24 Score=205.18 Aligned_cols=329 Identities=13% Similarity=0.057 Sum_probs=205.8
Q ss_pred EEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHH
Q 013204 35 YLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKL 114 (447)
Q Consensus 35 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~ 114 (447)
+++|.++ ..|+.+|++.+++.+++..... ..+..+...++++++++.+. .+.+++++++||++|++.+++.
T Consensus 15 ~i~l~~~----~~~~~~~~v~~a~~~~~~~~~~----~~g~~~~~~~~~~~l~~~~g-~~~~~v~~~~g~t~a~~~~~~~ 85 (359)
T 1svv_A 15 PYSFVND----YSVGMHPKILDLMARDNMTQHA----GYGQDSHCAKAARLIGELLE-RPDADVHFISGGTQTNLIACSL 85 (359)
T ss_dssp CEECSCS----CSSCCCHHHHHHHHHHTTCCCC----STTCSHHHHHHHHHHHHHHT-CTTSEEEEESCHHHHHHHHHHH
T ss_pred eEEecCC----CcCCCCHHHHHHHHHHHhhccc----cccccHHHHHHHHHHHHHhC-CCCccEEEeCCchHHHHHHHHH
Confidence 5666543 2457899999999998865221 13457788899999998874 5667999999999999999998
Q ss_pred HHHHHHhcCCCCcceEEEEcCCCccchhh-hhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHH
Q 013204 115 VWYYNNALGRPNKKKFIARQKSYHGSTLI-AASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNL 193 (447)
Q Consensus 115 ~~~~~~~~~~~~~~~vi~~~~~yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 193 (447)
++ .++++|++.+++||+.... .....|.. +..++..+ +. . ++++|
T Consensus 86 ~~--------~~gd~vl~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~-~~-----~--------d~~~l 131 (359)
T 1svv_A 86 AL--------RPWEAVIATQLGHISTHETGAIEATGHK------------VVTAPCPD-GK-----L--------RVADI 131 (359)
T ss_dssp HC--------CTTEEEEEETTSHHHHSSTTHHHHTTCC------------EEEECCTT-SC-----C--------CHHHH
T ss_pred Hh--------CCCCEEEEcccchHHHHHHHHHhcCCCe------------eEEEeCCC-Ce-----e--------cHHHH
Confidence 74 2347899999999887542 11111211 11222210 00 0 13778
Q ss_pred HHHHHhh---CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCC--CccccccccccCC--CCC
Q 013204 194 EDLILKE---GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF--GRLGTMFGCDKYS--IKP 266 (447)
Q Consensus 194 e~~l~~~---~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~--g~~g~~~~~~~~~--~~~ 266 (447)
++.+... ...++++|++++.+ .+|.+ .+.+++++|.++|++||+++|+||+|.+| |..+.. ....+ ..+
T Consensus 132 ~~~l~~~~~~~~~~~~~v~~~~~~-ptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~--~~~~~~~~~~ 207 (359)
T 1svv_A 132 ESALHENRSEHMVIPKLVYISNTT-EVGTQ-YTKQELEDISASCKEHGLYLFLDGARLASALSSPVND--LTLADIARLT 207 (359)
T ss_dssp HHHHHHSCSTTSCEEEEEEEESSC-TTSCC-CCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCC--CCHHHHHHHC
T ss_pred HHHHHHHHhccCCCceEEEEEcCC-CCcee-cCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcc--hhhhhhhhcC
Confidence 8877642 11247788888775 46654 45799999999999999999999999654 443321 11111 236
Q ss_pred Ceeee--cccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 013204 267 DLVSF--AKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKF 344 (447)
Q Consensus 267 d~v~~--sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l 344 (447)
|++++ +|. ++. .++|+++.++++++.+.... ...+.++..+....++..+.++...-++..++++++++++
T Consensus 208 d~~~~s~~K~-g~~-~~~g~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 280 (359)
T 1svv_A 208 DMFYIGATKA-GGM-FGEALIILNDALKPNARHLI-----KQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAIL 280 (359)
T ss_dssp SEEEEECTTT-TCS-SCEEEEECSGGGCTTHHHHH-----HHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHH
T ss_pred CEEEEecccC-CCC-CceEEEEEcccHHHHHHHHH-----hcCCcccccchhhHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 87765 463 333 57789999998876664210 0122223222222222222232111134567778888888
Q ss_pred HHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc-CceEEee---C-CEEEEecCCCCCH
Q 013204 345 QDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH-GMLVRVS---G-DNIMMSPPFIMSP 419 (447)
Q Consensus 345 ~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~---g-~~iR~~~~~~~t~ 419 (447)
++.| +..+..+... ..+.++.+.+. ..+.++|+++ ||++.+. + +.+|+++++.+++
T Consensus 281 ~~~L-~~~~~~~~~~--~~~~~~~~~~~----------------~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~ 341 (359)
T 1svv_A 281 KAGL-EACGIRLAWP--SASNQLFPILE----------------NTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEE 341 (359)
T ss_dssp HHHH-HHTTCCBSSC--CSSSEECBEEE----------------HHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCH
T ss_pred HHHh-ccCCeEEccC--CccceEEEEcC----------------HHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCH
Confidence 8888 4433332211 12333333332 2477888888 9998542 2 4699999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013204 420 EEVDELISKYGKALKAT 436 (447)
Q Consensus 420 e~i~~~~~~l~~~l~~~ 436 (447)
+++++++++|+++++++
T Consensus 342 ~~i~~~~~~l~~~~~~~ 358 (359)
T 1svv_A 342 KECHRFVEVLKRLVAST 358 (359)
T ss_dssp HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999987654
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.8e-24 Score=207.43 Aligned_cols=325 Identities=13% Similarity=0.118 Sum_probs=214.8
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcce
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 129 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~ 129 (447)
.+|++.+++.++... ..+. ...+...++++++++.+.....+++++++||++|++.+++.+. .++++
T Consensus 34 ~~~~v~~a~~~~~~~--~~~~---~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~--------~~gd~ 100 (393)
T 3kgw_A 34 LAPRVLAAGSLRMIG--HMQK---EMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLL--------EPGDS 100 (393)
T ss_dssp CCHHHHHHTTCCCCC--TTSH---HHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHC--------CTTCE
T ss_pred CCHHHHHHhcccccC--cccH---HHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcC--------CCCCE
Confidence 578888887664321 1111 1234566888888888753333469999999999999999763 34578
Q ss_pred EEEEcCCCccch-hhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEE
Q 013204 130 FIARQKSYHGST-LIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAF 208 (447)
Q Consensus 130 vi~~~~~yhg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~v 208 (447)
|++..++|++.. .......|... ..++.+..+. .++++|++.+... ++++|
T Consensus 101 vl~~~~~~~~~~~~~~~~~~g~~~------------~~~~~~~~~~-------------~d~~~l~~~i~~~---~~~~v 152 (393)
T 3kgw_A 101 FLTGTNGIWGMRAAEIADRIGARV------------HQMIKKPGEH-------------YTLQEVEEGLAQH---KPVLL 152 (393)
T ss_dssp EEEEESSHHHHHHHHHHHHTTCEE------------EEEECCTTCC-------------CCHHHHHHHHHHH---CCSEE
T ss_pred EEEEeCCchhHHHHHHHHHcCCce------------EEEeCCCCCC-------------CCHHHHHHHHhhC---CCcEE
Confidence 888888887643 22222222211 1111111100 0147788888642 45678
Q ss_pred EEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec--ccCCCcccceeEEE
Q 013204 209 IAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMPIGAIL 286 (447)
Q Consensus 209 i~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l~gg~~~~g~~~ 286 (447)
+++++++.+|.+.+ +++|.++|++||+++|+||+|+ +|. ..+.... ..+|++++| |+++|+ .++|+++
T Consensus 153 ~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~-~g~--~~~~~~~--~~~d~~~~s~sK~~~~~-~g~g~~~ 222 (393)
T 3kgw_A 153 FLVHGESSTGVVQP----LDGFGELCHRYQCLLLVDSVAS-LGG--VPIYMDQ--QGIDIMYSSSQKVLNAP-PGISLIS 222 (393)
T ss_dssp EEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-TTT--SCCCTTT--TTCCEEEEESSSTTCCC-SSCEEEE
T ss_pred EEeccCCcchhhcc----HHHHHHHHHHcCCEEEEECCcc-ccC--cccchhh--cCCCEEEecCcccccCC-CceeEEE
Confidence 88888888887776 8899999999999999999997 331 1222222 236777655 999877 6899999
Q ss_pred eChhHHHHhhhccCCCCcc----------------CcCCCCCCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHh
Q 013204 287 VSPEVSEVIHSQSNTLGSF----------------SHGFTYSGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQDG 347 (447)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~----------------~~~~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~~ 347 (447)
+++++++.+.........+ ....+++.++.+++++.++++.+.+ ++..++++++++++.+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~ 302 (393)
T 3kgw_A 223 FNDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKH 302 (393)
T ss_dssp ECHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred ECHHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 9999988886432111110 0122345677888888888887655 45678888888999999
Q ss_pred HhhccCCCcee-e-EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc-CceEEee-----CCEEEEec-CCCCC
Q 013204 348 VKAFSDSPIIG-E-IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH-GMLVRVS-----GDNIMMSP-PFIMS 418 (447)
Q Consensus 348 L~~l~~~~~~~-~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~-----g~~iR~~~-~~~~t 418 (447)
|+++ +..... . ....+.+..+.+.... ....+.+.|+++ ||++.++ ++.+|+++ ++.++
T Consensus 303 L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~ 370 (393)
T 3kgw_A 303 LQEM-GLKFFVKDPEIRLPTITTVTVPAGY-----------NWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNAT 370 (393)
T ss_dssp HHHT-TCCBSSSSGGGBCSSEEEEECCTTB-----------CHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCC
T ss_pred HHHc-CCeeccCChhhcCCeEEEEeCCCCC-----------CHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCC
Confidence 8876 332211 1 1122345555554321 145688888888 9999864 36799998 76779
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013204 419 PEEVDELISKYGKALKATE 437 (447)
Q Consensus 419 ~e~i~~~~~~l~~~l~~~~ 437 (447)
++++++++++|++++++++
T Consensus 371 ~~~i~~~~~~l~~~l~~~~ 389 (393)
T 3kgw_A 371 TENVDRVAEALREALQHCP 389 (393)
T ss_dssp HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 9999999999999997654
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-23 Score=208.64 Aligned_cols=361 Identities=14% Similarity=0.149 Sum_probs=210.1
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDT 110 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~ 110 (447)
.|+.||||.++.+. |.+.+++.+.+...... ..+.+...++++++++++ +.++++|++||++|++.
T Consensus 41 ~g~~ylD~~~~~~~-------~~v~~a~~~~~~~~~~~----y~~~~~~~~l~~~la~~~---~~~~v~~t~ggt~A~~~ 106 (467)
T 1ax4_A 41 SSAVYIDLLTDSGT-------NAMSDHQWAAMITGDEA----YAGSRNYYDLKDKAKELF---NYDYIIPAHQGRGAENI 106 (467)
T ss_dssp GGGCSEECSCSSSC-------CCEEHHHHHHHHTCCCC----SSSCHHHHHHHHHHHHHH---CCCEEEEESSHHHHHHH
T ss_pred CCceeeecccCcCC-------HHHHHHHHHHHhhcccc----cccCccHHHHHHHHHHHc---CCCcEEEcCCcHHHHHH
Confidence 46889999877532 78888888877543221 124567788999999997 34799999999999999
Q ss_pred HHHHHHHHHHhcCCCCcceEEEEcCCCc-cchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHH
Q 013204 111 QVKLVWYYNNALGRPNKKKFIARQKSYH-GSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189 (447)
Q Consensus 111 Al~~~~~~~~~~~~~~~~~vi~~~~~yh-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (447)
|+++++.++...|+. +..||+. .+| +.+...+...|.....-.. ......+....+.+ ..+
T Consensus 107 al~~~~~~~~~~Gd~-~~~viv~--~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~~-----------~~d 168 (467)
T 1ax4_A 107 LFPVLLKYKQKEGKA-KNPVFIS--NFHFDTTAAHVELNGCKAINIVT----EKAFDSETYDDWKG-----------DFD 168 (467)
T ss_dssp HHHHHHHHHHHTTCC-SSCEEEE--SSCCHHHHHHHHHTTCEEEECBC----GGGGCTTSCCTTTT-----------CBC
T ss_pred HHHHHHHhhccCCCc-cceEEEe--ccccchhhHHHhccCCceecccc----cccccccccCCccc-----------ccC
Confidence 999887543222311 0115555 455 5544444444432211000 00000000000000 011
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcC--C--------Ccccccccc
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA--F--------GRLGTMFGC 259 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g--~--------g~~g~~~~~ 259 (447)
+++|++.+....++++++|+++++++.+|..+++.+++++|+++|++||++||+||++.. . +..|...
T Consensus 169 ~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~-- 246 (467)
T 1ax4_A 169 IKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATI-- 246 (467)
T ss_dssp HHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCH--
T ss_pred HHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCch--
Confidence 478888887543236889999998888755788899999999999999999999998652 0 1222110
Q ss_pred ccCC----CCCCeee--ecccCCCccccee-EEEeC-h-hHHHHhhhccCCCCccCcCCCCCCcHHHHHH-HHHHHHHHh
Q 013204 260 DKYS----IKPDLVS--FAKALSSAYMPIG-AILVS-P-EVSEVIHSQSNTLGSFSHGFTYSGHPVSCAV-AIEALKIYK 329 (447)
Q Consensus 260 ~~~~----~~~d~v~--~sK~l~gg~~~~g-~~~~~-~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a-a~a~l~~~~ 329 (447)
...+ ..+|+++ ++|.++ .|+| +++++ + ++++.+..... .+....++...+..+.+ +.++++...
T Consensus 247 ~~~~~~~~~~~d~~~~s~sK~~g---~~~Gg~~~~~d~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~l~~~~ 320 (467)
T 1ax4_A 247 KEVIFDMYKYADALTMSAKKDPL---LNIGGLVAIRDNEEIFTLARQRCV---PMEGFVTYGGLAGRDMAAMVQGLEEGT 320 (467)
T ss_dssp HHHHHHHGGGCSEEEEETTSTTC---CSSCEEEEESSCHHHHHHHHHHHH---HHTCSTTTTTCCHHHHHHHHHHHHHTT
T ss_pred hhhhhhhccccceEEEeccccCC---CCcceEEEeCCHHHHHHHHHhhcc---ccccccccCCccchHHHHHHHHHHHhh
Confidence 0000 1256664 567664 4554 55566 6 77776542110 00111233333333332 223555433
Q ss_pred hhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHH-HHcCceEEee---
Q 013204 330 ERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQC-EKHGMLVRVS--- 405 (447)
Q Consensus 330 ~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~--- 405 (447)
+++..++..++.+++++.|++. +.+++... .|.++.+.+..-. +. ++........+.++| .++||.+.+.
T Consensus 321 ~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~--~~~~~~~~~~~~~-~~--~~~~~~~~~~l~~~L~~~~gv~v~~~g~~ 394 (467)
T 1ax4_A 321 EEEYLHYRIGQVKYLGDRLREA-GIPIQYPT--GGHAVFVDCKKLV-PQ--IPGDQFPAQAVINALYLESGVRAVEIGSF 394 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHT-TCCBCSSC--CSSEEEEESTTTC-TT--SCGGGCHHHHHHHHHHHHHCEECEEESHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhC-CCCcccCC--CceEEEEehhhhc-cc--cccCCCCHHHHHHHHHHhcCceeeecCcc
Confidence 3334555567778888888763 33333222 2334444421100 00 000000245678888 8899998872
Q ss_pred --------C-------CEEEEecC-CCCCHHHHHHHHHHHHHHHHHHH
Q 013204 406 --------G-------DNIMMSPP-FIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 406 --------g-------~~iR~~~~-~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
| +.+||+++ ..+|+++|++++++|++++++++
T Consensus 395 ~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~~ 442 (467)
T 1ax4_A 395 LLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFA 442 (467)
T ss_dssp HHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHT
T ss_pred ccccccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHHhhh
Confidence 2 57999998 55999999999999999887743
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-23 Score=201.43 Aligned_cols=337 Identities=19% Similarity=0.181 Sum_probs=217.7
Q ss_pred EEEecCCccccccCCCCCHHHHHHHHHHHhcCC-cccc---cCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHH
Q 013204 34 KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP-FYHS---FWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEAND 109 (447)
Q Consensus 34 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~ 109 (447)
.|||+.++ |+.+|++.+++.+++.+.. ..+. ..........++.+++++++. .+.+++++++||++|++
T Consensus 3 ~yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g-~~~~~v~~~~g~t~a~~ 75 (384)
T 1eg5_A 3 VYFDNNAT------TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLG-VSPSEIFFTSCATESIN 75 (384)
T ss_dssp EECBTTTC------CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHT-SCGGGEEEESCHHHHHH
T ss_pred EEEecCcc------CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcC-CCCCeEEEECCHHHHHH
Confidence 58887554 4689999999999987521 1100 001123456788899998873 45578999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhh--cccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAA--SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
.+++.+..+. . .++++|++.++.||+...... ...|... ..++....+.
T Consensus 76 ~~~~~~~~~~---~-~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~------------~~v~~~~~~~------------- 126 (384)
T 1eg5_A 76 WILKTVAETF---E-KRKRTIITTPIEHKAVLETMKYLSMKGFKV------------KYVPVDSRGV------------- 126 (384)
T ss_dssp HHHHHHHHHT---T-TTCCEEEECTTSCHHHHHHHHHHHHTTCEE------------EECCBCTTSC-------------
T ss_pred HHHHhhhhhc---c-CCCCEEEECCCCchHHHHHHHHHHhcCCEE------------EEEccCCCCc-------------
Confidence 9999875321 0 124789999999988743331 2222211 1111111000
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcC--CEEEEehhhcCCCccccccccccCCCC
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYD--ILFIADEVICAFGRLGTMFGCDKYSIK 265 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g--~~li~DEv~~g~g~~g~~~~~~~~~~~ 265 (447)
.++++|++.+. +++++|+++++++.+|.+.+ +++|.++|++|| +++|+||+|+ +|.. ..... ...
T Consensus 127 ~d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~li~Dea~~-~~~~--~~~~~--~~~ 193 (384)
T 1eg5_A 127 VKLEELEKLVD----EDTFLVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKI--PFSLE--KLE 193 (384)
T ss_dssp BCHHHHHHHCC----TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTS--CCCCT--TTC
T ss_pred cCHHHHHHHhC----CCCeEEEEECCCCCcccccC----HHHHHHHHHhcCCceEEEEEhhhh-cCCc--ccCch--hcC
Confidence 01366776664 35778888888888887776 899999999999 9999999997 6543 22222 235
Q ss_pred CCeeeec--ccCCCcccceeEEEeChhH--HHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh--hcHHHHHHH
Q 013204 266 PDLVSFA--KALSSAYMPIGAILVSPEV--SEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE--RNIVEQVNK 339 (447)
Q Consensus 266 ~d~v~~s--K~l~gg~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~--~~~~~~~~~ 339 (447)
+|++++| |.++. .++|++++++++ ...+... .......+++.++++++++.++|+...+ ++..+++++
T Consensus 194 ~di~~~s~sK~~g~--~G~G~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~ 267 (384)
T 1eg5_A 194 VDYASFSAHKFHGP--KGVGITYIRKGVPIRPLIHGG----GQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEK 267 (384)
T ss_dssp CSEEEEEGGGGTSC--TTCEEEEECTTSCCCCSBCSS----CTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCEEEecHHHhcCC--CceEEEEEcCCCccccccccC----cccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 7888766 97553 237999998875 2222100 0001123556788888888888886533 456677788
Q ss_pred HHHHHHHhHhhccCCCceeeEe-eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-------------
Q 013204 340 IAPKFQDGVKAFSDSPIIGEIR-GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS------------- 405 (447)
Q Consensus 340 ~~~~l~~~L~~l~~~~~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------------- 405 (447)
+.+++.+.|++. +..+..... ..+.++.+.+... ....+.+.|.++||.+.++
T Consensus 268 ~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~ 334 (384)
T 1eg5_A 268 LRSKLVSGLMNL-GAHIITPLEISLPNTLSVSFPNI------------RGSTLQNLLSGYGIYVSTSSACTSKDERLRHV 334 (384)
T ss_dssp HHHHHHHHHHTT-TCEECSCTTSBCTTEEEEECTTC------------CHHHHHHHHHHTTEECBC------------CH
T ss_pred HHHHHHHHhCCC-CeEEeCCcccCCCCEEEEEeCCC------------CHHHHHHHHhhCCeEEeccccccCCCCcchHH
Confidence 888888888763 221111101 1233445544321 1446788899999998863
Q ss_pred -----------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 406 -----------GDNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 406 -----------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
.+.+|++++..++++++++++++|+++++++++
T Consensus 335 ~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 378 (384)
T 1eg5_A 335 LDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFLDL 378 (384)
T ss_dssp HHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC--
T ss_pred HHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 146999988889999999999999999987764
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-23 Score=203.41 Aligned_cols=336 Identities=10% Similarity=0.043 Sum_probs=213.7
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCccc-ccCc---CCChHHHHHHHHHHHhcCcCCCCeEEEeCChhh
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYH-SFWN---RTTKPSLDLAKELLEMFTASKMAKVFFTNSGSE 106 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~---~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGse 106 (447)
++..|||+.++. +.+|++.+++.+.+.+..... +... ...+...++.+++++++. .++++++|++||++
T Consensus 25 ~~~~~ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g-~~~~~v~~~~g~t~ 97 (406)
T 3cai_A 25 DGWVHFDAPAGM------LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVN-ADPGGVVLGADRAV 97 (406)
T ss_dssp SSCEECBGGGCC------CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHT-CCGGGEEEESCHHH
T ss_pred CCeEEEeCCCcC------CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEeCChHH
Confidence 457899986542 478999999999987632111 0000 123456788889988874 45578999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcc---cCCccccCCCCCCCCcceecCCC-CcccCCCCCCCh
Q 013204 107 ANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASL---SGLPALHQKFDLPAPFVLHTDCP-HYWRYAHPGETE 182 (447)
Q Consensus 107 A~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 182 (447)
++..+++.+... . .++++|++..+.|++........ .|... ..++.. ..+. .
T Consensus 98 al~~~~~~l~~~----~-~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v------------~~v~~~~~~~~-----~-- 153 (406)
T 3cai_A 98 LLSLLAEASSSR----A-GLGYEVIVSRLDDEANIAPWLRAAHRYGAKV------------KWAEVDIETGE-----L-- 153 (406)
T ss_dssp HHHHHHHHTGGG----G-BTTCEEEEETTSCGGGTHHHHHHHHHHBCEE------------EEECCCTTTCC-----C--
T ss_pred HHHHHHHHHhhc----c-CCCCEEEEcCCccHHHHHHHHHHHHhcCCeE------------EEEecCcccCC-----c--
Confidence 999988854100 0 23478999999998764332221 12111 112211 0000 0
Q ss_pred hHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccC
Q 013204 183 EEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKY 262 (447)
Q Consensus 183 ~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~ 262 (447)
++++|++.+. +++++|+++++++.+|.+.+ +++|.++|++||+++|+||+|+ +|... +....+
T Consensus 154 ------d~~~l~~~l~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~~~ 216 (406)
T 3cai_A 154 ------PTWQWESLIS----KSTRLVAVNSASGTLGGVTD----LRAMTKLVHDVGALVVVDHSAA-APYRL--LDIRET 216 (406)
T ss_dssp ------CGGGHHHHCC----TTEEEEEEESBCTTTCBBCC----CHHHHHHHHHTTCEEEEECTTT-TTTCC--CCHHHH
T ss_pred ------CHHHHHHHhC----CCceEEEEeCCcCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCCC--CCchhc
Confidence 1266666664 35788889998888888776 8999999999999999999997 33221 222222
Q ss_pred CCCCCeee--ecccCCCccccee-EEEeChhHHHHhhhccCCCCc--cCcCCCCCCcHHHHHHHHHHHHHHhh-------
Q 013204 263 SIKPDLVS--FAKALSSAYMPIG-AILVSPEVSEVIHSQSNTLGS--FSHGFTYSGHPVSCAVAIEALKIYKE------- 330 (447)
Q Consensus 263 ~~~~d~v~--~sK~l~gg~~~~g-~~~~~~~~~~~~~~~~~~~~~--~~~~~t~~~~~~~~~aa~a~l~~~~~------- 330 (447)
.+|+++ ++|.++ + ++| ++++++++++.+.......+. .......+.++.+++++.++++.+..
T Consensus 217 --~~d~~~~s~~K~~g-~--~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~ 291 (406)
T 3cai_A 217 --DADVVTVNAHAWGG-P--PIGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARG 291 (406)
T ss_dssp --CCSEEEEEGGGGTS-C--SCEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCS
T ss_pred --CCCEEEeehhhhcC-C--CcCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhcccccc
Confidence 367775 569664 3 388 999999888776421100000 00011334677777777778876653
Q ss_pred ----------hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCc
Q 013204 331 ----------RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGM 400 (447)
Q Consensus 331 ----------~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 400 (447)
+++.++++++.+++.+.|+++.+..+.......+.++.+.+... ....+.+.|.++||
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~L~~~gi 359 (406)
T 3cai_A 292 SRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQIPVVSFAVHKV------------PADRVVQRLADNGI 359 (406)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECCCCSSBCSEEEEEETTB------------CHHHHHHHHHHTTE
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCccccCCEEEEEECCc------------CHHHHHHHHHHCCc
Confidence 33556667777777777776522211111111244566665421 14568888999999
Q ss_pred eEEeeC--------------CEEEEecCCCCCHHHHHHHHHHHHH
Q 013204 401 LVRVSG--------------DNIMMSPPFIMSPEEVDELISKYGK 431 (447)
Q Consensus 401 ~~~~~g--------------~~iR~~~~~~~t~e~i~~~~~~l~~ 431 (447)
.+.++. +.+|++++..++++++++++++|++
T Consensus 360 ~v~~g~~~~~~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 360 LAIANTGSRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp ECEECCSCHHHHHHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred EEecCChHHHHHHcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 998753 5699999988999999999999875
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8e-24 Score=208.67 Aligned_cols=342 Identities=11% Similarity=0.023 Sum_probs=208.5
Q ss_pred CCEEEecCCccccccCCCCC--HHHHHHHHHHHhcCC-cccccCcCCChHHHHHHHHHHHhcCc--C---CCC--eEEEe
Q 013204 32 GKKYLDSLAGLWCTALGGSE--PRLVAAATAQLNTLP-FYHSFWNRTTKPSLDLAKELLEMFTA--S---KMA--KVFFT 101 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~--p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~--~---~~~--~v~~~ 101 (447)
+..++||..|.+..+-|+.+ |.|.+++.+++++.. ..+....+ ..++.+.+++++.. . +++ +++++
T Consensus 48 ~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g----~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t 123 (420)
T 4f4e_A 48 RPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDG----IAAYDASVQKLLLGDDSPLIAAGRVVTAQA 123 (420)
T ss_dssp CSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTC----CHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred CCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCC----cHHHHHHHHHHhcCCCccccccCceEEEEC
Confidence 45789999887666667665 899999999887622 22222122 33444444444421 1 356 89999
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC--CcccCCCCC
Q 013204 102 NSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP--HYWRYAHPG 179 (447)
Q Consensus 102 ~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 179 (447)
+||++|+..++++.... .++++|++.+|+|+++.......+.... .+++. +.+.
T Consensus 124 ~G~t~al~~~~~~~~~~------~~gd~Vlv~~p~~~~~~~~~~~~g~~~~-------------~v~~~~~~~~~----- 179 (420)
T 4f4e_A 124 LGGTGALKIGADFLRTL------NPKAKVAISDPSWENHRALFDMAGFEVV-------------AYPYYDAKTNG----- 179 (420)
T ss_dssp EHHHHHHHHHHHHHHHH------CTTCCEEEEESCCHHHHHHHHHTTCCEE-------------EEECEETTTTE-----
T ss_pred CccHHHHHHHHHHHHHh------CCCCEEEEeCCCcHhHHHHHHHcCCeEE-------------EeeeeccccCc-----
Confidence 99999999998754322 3457899999999998655554333221 11110 0000
Q ss_pred CChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc--cc
Q 013204 180 ETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT--MF 257 (447)
Q Consensus 180 ~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~--~~ 257 (447)
.+++++++.+.+.. +.++++++++.++.+|. .++.+.+++|+++|++||+++|+||+|.+++..+. ..
T Consensus 180 --------~d~~~l~~~l~~~~-~~~~~v~i~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~ 249 (420)
T 4f4e_A 180 --------VNFDGMLAALNGYE-PGTIVVLHACCHNPTGV-DLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAA 249 (420)
T ss_dssp --------ECHHHHHHHHTTCC-TTCEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGH
T ss_pred --------cCHHHHHHHHHhCC-CCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhH
Confidence 01477888876443 34566676666666664 55788899999999999999999999998876541 11
Q ss_pred cc-ccCCCCCCe---eeecccCCCcccceeEEEe---ChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHH--
Q 013204 258 GC-DKYSIKPDL---VSFAKALSSAYMPIGAILV---SPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIY-- 328 (447)
Q Consensus 258 ~~-~~~~~~~d~---v~~sK~l~gg~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~-- 328 (447)
.. ...+..+++ .++||.++..++|+|++++ ++++++.+...- .......+...+++++.++.+.++..
T Consensus 250 ~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~l 326 (420)
T 4f4e_A 250 AVRLFAAANLNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQL---KRVIRTNYSNPPTHGGAIVAAVLASPEL 326 (420)
T ss_dssp HHHHHHHTTCCEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHH---HHHHHTTTSSCCSHHHHHHHHHHHCHHH
T ss_pred HHHHHHhcCCCEEEEEeCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHH---HHHHhcccCCCCHHHHHHHHHHhcCHHH
Confidence 11 111222332 2689999853389999863 456554432100 01111223344566666665555421
Q ss_pred ----h--hhcHHHHHHHHHHHHHHhHhhccC-CCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCce
Q 013204 329 ----K--ERNIVEQVNKIAPKFQDGVKAFSD-SPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGML 401 (447)
Q Consensus 329 ----~--~~~~~~~~~~~~~~l~~~L~~l~~-~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~ 401 (447)
+ -++..++++++++.+.+.|+++.. .++.......|.+..+.+. ...+.+.+.++||+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~---------------~~~~~~~l~~~gI~ 391 (420)
T 4f4e_A 327 RASWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSFINAQRGMFSYSGLT---------------SAQVDRLREEFGIY 391 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHSCSSEEECCCC---------------HHHHHHHHHHHCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeECCCccEEEEeCCC---------------HHHHHHHHHhCCEE
Confidence 1 134567777788888888877621 1111111222334333321 23466677789999
Q ss_pred EEeeCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 402 VRVSGDNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 402 ~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
+.+++ |+++. ..++++|++++++|++++
T Consensus 392 v~~~~---Ris~~-~~~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 392 AVSTG---RICVA-ALNTRNLDVVANAIAAVL 419 (420)
T ss_dssp CCTTS---EEEGG-GCCTTTHHHHHHHHHHHH
T ss_pred ecCCC---eEEEe-cCCHHHHHHHHHHHHHHh
Confidence 98764 88864 348888999999999876
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-22 Score=201.00 Aligned_cols=305 Identities=13% Similarity=0.136 Sum_probs=200.4
Q ss_pred CCChHHHHHHHHHHHhcCcCC--------CCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhh
Q 013204 74 RTTKPSLDLAKELLEMFTASK--------MAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAA 145 (447)
Q Consensus 74 ~~~~~~~~l~~~l~~~~~~~~--------~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~ 145 (447)
+..+....+++.+.+.+.... .+++++++|+++|+..+++.+. ..++.|++.+|+|++......
T Consensus 79 G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~--------~~gd~Vlv~~p~y~~~~~~~~ 150 (425)
T 2r2n_A 79 GIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII--------NPGDNVLLDEPAYSGTLQSLH 150 (425)
T ss_dssp CCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHC--------CTTCEEEEESSCCHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhC--------CCCCEEEEeCCCcHHHHHHHH
Confidence 345566677777766553221 2689999999999999999873 234789999999999865543
Q ss_pred cccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhC--------CCcEEEEEEcc-ccCC
Q 013204 146 SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEG--------PETIAAFIAEP-VIGA 216 (447)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~--------~~~~a~vi~ep-v~~~ 216 (447)
.. |.... .++.... + .++++|++.+.... ..++++|++.| .++.
T Consensus 151 ~~-g~~~~------------~v~~~~~------~--------~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NP 203 (425)
T 2r2n_A 151 PL-GCNII------------NVASDES------G--------IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNP 203 (425)
T ss_dssp GG-TCEEE------------EECEETT------E--------ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTT
T ss_pred Hc-CCEEE------------EeCcCCC------C--------CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCC
Confidence 32 22111 1111000 0 11477888876321 12456776654 4555
Q ss_pred CCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-ccccCC---CCCCeeeecccCCCcccceeEEEeChhHH
Q 013204 217 GGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-GCDKYS---IKPDLVSFAKALSSAYMPIGAILVSPEVS 292 (447)
Q Consensus 217 ~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~~~~~~---~~~d~v~~sK~l~gg~~~~g~~~~~~~~~ 292 (447)
+|. ..+.+.+++|.++|++||+++|+||+|+++.+.|... ....++ ....+.+|||.++.| +|+|+++++++++
T Consensus 204 tG~-~~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~G-lRiG~~~~~~~l~ 281 (425)
T 2r2n_A 204 TGN-SLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSG-LRIGFLTGPKPLI 281 (425)
T ss_dssp TCC-CCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCST-TCCEEEEEEHHHH
T ss_pred CCC-cCCHHHHHHHHHHHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhccCc-cceEEEecCHHHH
Confidence 564 4678899999999999999999999999876655421 111122 122344789999855 8999999999998
Q ss_pred HHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh-------hcHHHHHHHHHHHHHHhHhhc-cCCCceee-Eeee
Q 013204 293 EVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE-------RNIVEQVNKIAPKFQDGVKAF-SDSPIIGE-IRGT 363 (447)
Q Consensus 293 ~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-------~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~-~~~~ 363 (447)
+.+... ....+++.+++++.++.++|+.+.. ++..+.++++.+.+.+.|++. .+ +... .+..
T Consensus 282 ~~l~~~-------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~--~~~~~~p~~ 352 (425)
T 2r2n_A 282 ERVILH-------IQVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTG--LAEWHVPAA 352 (425)
T ss_dssp HHHHHH-------HHTTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS--SEEECCCSB
T ss_pred HHHHHH-------HHHhcCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CeEEeCCCc
Confidence 887632 2334677889999988888875322 223445555666666666653 22 2111 2345
Q ss_pred eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee----------CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 364 GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS----------GDNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 364 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----------g~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
|.++.+.+...... ...+.+.|.++||.+.++ .+.+|++++. .++++|++++++|++++
T Consensus 353 g~~~~~~~~~~~~~----------~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l 421 (425)
T 2r2n_A 353 GMFLWIKVKGINDV----------KELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSS-ASPEQMDVAFQVLAQLI 421 (425)
T ss_dssp SSEEEEEETTCSCC----------HHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSS-CCHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCH----------HHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHH
Confidence 66777777542110 222567888999999874 1569999663 69999999999999988
Q ss_pred HH
Q 013204 434 KA 435 (447)
Q Consensus 434 ~~ 435 (447)
++
T Consensus 422 ~~ 423 (425)
T 2r2n_A 422 KE 423 (425)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-23 Score=205.52 Aligned_cols=309 Identities=13% Similarity=0.052 Sum_probs=187.4
Q ss_pred HHHHHHHHHHHhc----C-cCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCC-CCcceEEEE-cCCCccchhhhhcccCC
Q 013204 78 PSLDLAKELLEMF----T-ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGR-PNKKKFIAR-QKSYHGSTLIAASLSGL 150 (447)
Q Consensus 78 ~~~~l~~~l~~~~----~-~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~-~~~~~vi~~-~~~yhg~~~~~~~~~~~ 150 (447)
...++.+.+++++ . ..++++|++++||++|++.+++.+.. .|+ .++.+|++. ++.||++..........
T Consensus 76 g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~----~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~ 151 (417)
T 3g7q_A 76 GKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFAG----RRADGSTKKVLFPLAPEYIGYADSGLEDDLF 151 (417)
T ss_dssp SHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSB----C----CCBEEEESSCCCHHHHHC-----CCE
T ss_pred CcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHcC----CCccCCcceEEEeCCCccccchhhccchhhh
Confidence 3456666666654 1 24678999999999999999998731 111 112277776 99999986543221110
Q ss_pred ccccCCCCCCCCcceecCCCC-cccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHH
Q 013204 151 PALHQKFDLPAPFVLHTDCPH-YWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEK 229 (447)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~ 229 (447)
.... ..+..++... .+. .+ +++++ + . +++++|+++..++.+|. ..+.+.+++
T Consensus 152 ~~~~-------~~~~~~~~~~~~~~-----~d--------~~~l~--~---~-~~~~~v~~~~p~NptG~-~~~~~~~~~ 204 (417)
T 3g7q_A 152 VSAR-------PNIELLPEGQFKYH-----VD--------FEHLH--I---G-EETGMICVSRPTNPTGN-VITDEELMK 204 (417)
T ss_dssp EECC-------CEEEEEGGGEEEEE-----CC--------GGGCC--C---C-TTEEEEEEESSCTTTCC-CCCHHHHHH
T ss_pred cccc-------CcccccCCcccccc-----cC--------HHHhc--c---c-cCceEEEECCCCCCCCC-ccCHHHHHH
Confidence 0000 0011111000 000 00 13343 1 2 34556666555555664 556778999
Q ss_pred HHHHHHhcCCEEEEehhhcCCCcccccccc---ccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccC
Q 013204 230 VQAVVKKYDILFIADEVICAFGRLGTMFGC---DKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFS 306 (447)
Q Consensus 230 l~~l~~~~g~~li~DEv~~g~g~~g~~~~~---~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 306 (447)
|.++|++||+++|+||+|..+ ..+..+.- ...+....+.++||. +++++++|++++++++++.+... .
T Consensus 205 l~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~G~r~G~~~~~~~~~~~~~~~-------~ 275 (417)
T 3g7q_A 205 LDRLANQHNIPLVIDNAYGVP-FPGIIFSEARPLWNPNIILCMSLSKL-GLPGSRCGIIIANDKTITAIANM-------N 275 (417)
T ss_dssp HHHHHHHTTCCEEEECTTCTT-TTCCBCSCCCCCCCTTEEEEEESGGG-TCTTSCCEEEECCHHHHHHHHHH-------H
T ss_pred HHHHHHHcCCEEEEeCCCccc-cccccccccccCCCCCEEEEEechhc-cCCCcceEEEEeCHHHHHHHHHh-------h
Confidence 999999999999999999743 22111110 011111224578994 44448999999999998887632 2
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHh-----hhcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCC
Q 013204 307 HGFTYSGHPVSCAVAIEALKIYK-----ERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEP 380 (447)
Q Consensus 307 ~~~t~~~~~~~~~aa~a~l~~~~-----~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~ 380 (447)
+..++..++++++++.+.++... .+.+.+.++++.+.+.+.|++. ...++.......|.++.+.+.....
T Consensus 276 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~---- 351 (417)
T 3g7q_A 276 GIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAIFLWLWFKDLPI---- 351 (417)
T ss_dssp HHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCCBSSEEEEECTTCSS----
T ss_pred cceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCCcceEEEEEcCCCCC----
Confidence 33466677888888877775321 1124456666777777777663 4333322233456677777754211
Q ss_pred CCCCcchHHHHHHHHHHcCceEEeeC--------------CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 381 FPPEWGIGAYFGAQCEKHGMLVRVSG--------------DNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 381 ~~~~~~~~~~~~~~l~~~Gi~~~~~g--------------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
....+.+.|.++||.+.++. +.+||+++. ++++|++++++|+++++++.+
T Consensus 352 ------~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~--~~~~i~~~~~~l~~~l~~~~~ 415 (417)
T 3g7q_A 352 ------TTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP--EPDKIEAGVKILAEEIERAWR 415 (417)
T ss_dssp ------CHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS--CHHHHHHHHHHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEEEEecC--CHHHHHHHHHHHHHHHHHHHh
Confidence 14568888999999998742 369999764 999999999999999987654
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.7e-24 Score=213.24 Aligned_cols=370 Identities=14% Similarity=0.110 Sum_probs=208.6
Q ss_pred cCcEEEe-CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEe
Q 013204 23 EGSYVYD-VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFT 101 (447)
Q Consensus 23 ~g~~~~d-~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~ 101 (447)
+|..+++ ..|+.||||.++.++ |+|.+++.+++...... ....+...++++++++++ +.++++|+
T Consensus 30 ~g~~~~~~~~~~~ylD~~~~~~~-------~~v~~a~~~~l~~~~~~----y~~~~~~~~l~~~la~~~---~~~~v~~t 95 (467)
T 2oqx_A 30 SGMNPFLLDSEDVFIDLLTDSGT-------GAVTQSMQAAMMRGDEA----YSGSRSYYALAESVKNIF---GYQYTIPT 95 (467)
T ss_dssp TTSCGGGSCGGGCSEECSCCSSC-------SCCCHHHHHHTTSCCCC----SSSCHHHHHHHHHHHHHH---CCSEEEEE
T ss_pred cCCCceeccCCCeeEecccCCCc-------HHHHHHHHHHhccCcce----eccCchhHHHHHHHHHHh---CcCcEEEc
Confidence 3443443 236789999876532 88999998887643221 124556788999999997 45799999
Q ss_pred CChhhHHHHHHHHHHHHH-HhcCCCCcceEEEEcCCCccchhhhhcc-cCCccccCCCCCCCCcceecCCCCcccCCCCC
Q 013204 102 NSGSEANDTQVKLVWYYN-NALGRPNKKKFIARQKSYHGSTLIAASL-SGLPALHQKFDLPAPFVLHTDCPHYWRYAHPG 179 (447)
Q Consensus 102 ~sGseA~~~Al~~~~~~~-~~~~~~~~~~vi~~~~~yhg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (447)
+||++|++.|+++++..+ ..+|.++++.|+.. .||+.+...... .+..... ..... .+ ..+.+..+.
T Consensus 96 ~~gt~A~~~al~~~~~~~~~~~G~~~~d~Ii~~--~~h~~t~~~~~~~~~~~~~~-~~~~~--~~-~~~~~~~~~----- 164 (467)
T 2oqx_A 96 HQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFS--NYFFDTTQGHSQINGCTVRN-VYIKE--AF-DTGVRYDFK----- 164 (467)
T ss_dssp C--CCSHHHHHHHHHHHHHHHHCCCTTTCEEEE--SSCCHHHHHHHHHTTCEEEE-CBCTT--TT-CTTSCCTTT-----
T ss_pred CCcHHHHHHHHHHHhccccccCCCCccceEEec--ccccccchhhhhccCcceee-ccccc--cc-cCCCCCCcc-----
Confidence 999999999999886431 11131111446554 588664322221 1111110 00000 00 000000000
Q ss_pred CChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcC----------
Q 013204 180 ETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA---------- 249 (447)
Q Consensus 180 ~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g---------- 249 (447)
. ..++++|++.+.....+++++|+++++++.+|..+++.+++++|+++|++||++||+|++|..
T Consensus 165 ~------~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~ 238 (467)
T 2oqx_A 165 G------NFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQRE 238 (467)
T ss_dssp T------CBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHC
T ss_pred C------CcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhccccc
Confidence 0 012478888887533235788999988777544777899999999999999999999965532
Q ss_pred CCccccccc-cc--cCCCCCCee--eecccCCCcccce-eEEEeChh-HHHHhhhccCCCCccCcCCCCCCcHHHHHHHH
Q 013204 250 FGRLGTMFG-CD--KYSIKPDLV--SFAKALSSAYMPI-GAILVSPE-VSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAI 322 (447)
Q Consensus 250 ~g~~g~~~~-~~--~~~~~~d~v--~~sK~l~gg~~~~-g~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~ 322 (447)
.+..|.... +. .+ ..+|++ +++|.++. |+ |+++++++ +++.+..............++........+++
T Consensus 239 ~~~~g~~~~~~~~~~~-~~~d~~~~s~sK~~g~---~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 314 (467)
T 2oqx_A 239 AEYKDWTIEQITRETY-KYADMLAMSAKKDAMV---PMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERL 314 (467)
T ss_dssp GGGTTSCHHHHHHHHG-GGCSEEEEESSSTTCC---SSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHH
T ss_pred ccccCccHHHHhhhhh-ccCCeEEEecccccCC---CCceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHH
Confidence 123332111 10 00 114544 56788853 43 55667666 44333211000000001112222222222222
Q ss_pred -HHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeec--CCCCCCCCCCCcch-HHHHHHHH-HH
Q 013204 323 -EALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFAD--NKSPNEPFPPEWGI-GAYFGAQC-EK 397 (447)
Q Consensus 323 -a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~--~~~~~~~~~~~~~~-~~~~~~~l-~~ 397 (447)
..++...+++..++..++.+++++.|+++ +.++. . ..+.++.+.+.. ..... ..+ ...+.+.| .+
T Consensus 315 ~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~--~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~L~~~ 384 (467)
T 2oqx_A 315 AVGLYDGMNLDWLAYRIAQVQYLVDGLEEI-GVVCQ-Q--AGGHAAFVDAGKLLPHIPA------DQFPAQALACELYKV 384 (467)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-TCCEE-E--ECSSCEEEEHHHHSTTSCG------GGCHHHHHHHHHHHH
T ss_pred HHhhHhhhhHHHHHHHHHHHHHHHHHHHHC-CCeee-c--CCceEEEEechhhcccCCc------ccccHHHHHHHHHHh
Confidence 22232112234566677888899998876 44444 3 234455556532 11010 012 44567888 88
Q ss_pred cCceEEeeC------------------CEEEEecCCC-CCHHHHHHHHHHHHHHHHHHH
Q 013204 398 HGMLVRVSG------------------DNIMMSPPFI-MSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 398 ~Gi~~~~~g------------------~~iR~~~~~~-~t~e~i~~~~~~l~~~l~~~~ 437 (447)
+||.+.+++ +.+|++++.. +|+++|++++++|++++++++
T Consensus 385 ~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~~~ 443 (467)
T 2oqx_A 385 AGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAA 443 (467)
T ss_dssp HCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHSGG
T ss_pred cCceecccccccccccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 999988743 5799999988 999999999999999987643
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-23 Score=200.09 Aligned_cols=333 Identities=14% Similarity=0.182 Sum_probs=216.8
Q ss_pred EEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc-CCCCeEEEeCChhhHHHHHHH
Q 013204 35 YLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA-SKMAKVFFTNSGSEANDTQVK 113 (447)
Q Consensus 35 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~v~~~~sGseA~~~Al~ 113 (447)
++||..| +++ .+|+|++++.+++. ..+. ....+...++++++++++.. ...+++++++||++|++.+++
T Consensus 5 ~~~~~~g----p~~-~~~~v~~a~~~~~~---~~~~--~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~ 74 (366)
T 1m32_A 5 YLLLTPG----PLT-TSRTVKEAMLFDSC---TWDD--DYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLG 74 (366)
T ss_dssp CEECSSS----SCC-CCHHHHHTTCCCCC---TTSH--HHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHH
T ss_pred cccccCC----CcC-CCHHHHHHHhhhhc---CCCH--HHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHH
Confidence 5777655 333 78999999877432 1111 01125567888999988741 123479999999999999999
Q ss_pred HHHHHHHhcCCCCcceEEEEcCCCccchh-hhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHH
Q 013204 114 LVWYYNNALGRPNKKKFIARQKSYHGSTL-IAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 192 (447)
Q Consensus 114 ~~~~~~~~~~~~~~~~vi~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (447)
.++ .++++|+++++.||+... ......|... ..++.+..+. .++++
T Consensus 75 ~~~--------~~gd~vi~~~~~~~~~~~~~~~~~~g~~~------------~~v~~~~~~~-------------~d~~~ 121 (366)
T 1m32_A 75 SAL--------GPQDKVLIVSNGAYGARMVEMAGLMGIAH------------HAYDCGEVAR-------------PDVQA 121 (366)
T ss_dssp HSC--------CTTCCEEEEESSHHHHHHHHHHHHHTCCE------------EEEECCTTSC-------------CCHHH
T ss_pred Hhc--------CCCCeEEEEeCCCccHHHHHHHHHhCCce------------EEEeCCCCCC-------------CCHHH
Confidence 763 234678888888887632 2222122211 1112111000 11477
Q ss_pred HHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeee--
Q 013204 193 LEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS-- 270 (447)
Q Consensus 193 le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~-- 270 (447)
|++.+... ..+++|++...++.+|.+.+ +++|.++|++||+++|+||+|+ ++..+ .... ...+|+++
T Consensus 122 l~~~l~~~--~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~~~~~--~~~~--~~~~di~~~s 190 (366)
T 1m32_A 122 IDAILNAD--PTISHIAMVHSETTTGMLNP----IDEVGALAHRYGKTYIVDAMSS-FGGIP--MDIA--ALHIDYLISS 190 (366)
T ss_dssp HHHHHHHC--TTCCEEEEESEETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCTT--TTTCSEEEEE
T ss_pred HHHHHhcC--CCeEEEEEecccCCcceecC----HHHHHHHHHHcCCEEEEECCcc-ccCcC--cccc--ccCccEEEec
Confidence 88887642 12445555555556676766 8999999999999999999997 44432 1122 23478775
Q ss_pred ecccCCCcccceeEEEeChhHHHHhhhccCCCCccC--------------cCCCCCCcHHHHHHHHHHHHHHhhh----c
Q 013204 271 FAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFS--------------HGFTYSGHPVSCAVAIEALKIYKER----N 332 (447)
Q Consensus 271 ~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~--------------~~~t~~~~~~~~~aa~a~l~~~~~~----~ 332 (447)
++|+++++ .++|++++++++++.+.... ..+. ....++.++.+++++.++++.+.+. +
T Consensus 191 ~~K~~~~~-~g~G~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~ 266 (366)
T 1m32_A 191 ANKCIQGV-PGFAFVIAREQKLAACKGHS---RSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAA 266 (366)
T ss_dssp SSSTTCCC-SSEEEEEEEHHHHTTCTTCC---SCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CcccccCC-CceEEEEECHHHHHhhcCCC---CCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhH
Confidence 57999776 57899999999887765311 0100 1113567888888888888876543 4
Q ss_pred HHHHHHHHHHHHHHhHhhccCCCceeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee----CC
Q 013204 333 IVEQVNKIAPKFQDGVKAFSDSPIIGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS----GD 407 (447)
Q Consensus 333 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----g~ 407 (447)
..++++++.+++++.|+++ +..+.... ...+.++.+.+.+.... ....+.+.|.++||.+.++ .+
T Consensus 267 ~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~gi~v~~~~~~~~~ 336 (366)
T 1m32_A 267 RHQRYQQNQRSLVAGMRAL-GFNTLLDDELHSPIITAFYSPEDPQY---------RFSEFYRRLKEQGFVIYPGKVSQSD 336 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCCCTTC---------CHHHHHHHHHHTTEECEECCCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHC-CCeeccCchhcCceEEEEEcCccCCC---------CHHHHHHHHHHCCEEEECCcCCCCC
Confidence 6778888888998888876 33322211 12344667776531000 1456888999999999875 35
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 408 NIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 408 ~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
.+|++++..++++++++++++|++++++
T Consensus 337 ~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 364 (366)
T 1m32_A 337 CFRIGNIGEVYAADITALLTAIRTAMYW 364 (366)
T ss_dssp EEEEECCSSCCHHHHHHHHHHHHHHCTT
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 7999999889999999999999988654
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=207.85 Aligned_cols=306 Identities=13% Similarity=0.071 Sum_probs=199.7
Q ss_pred ChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHH--HHHHHHHHHHHhcCCCC--------cceEEEEcCCCccchhhhh
Q 013204 76 TKPSLDLAKELLEMFTASKMAKVFFTNSGSEAND--TQVKLVWYYNNALGRPN--------KKKFIARQKSYHGSTLIAA 145 (447)
Q Consensus 76 ~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~--~Al~~~~~~~~~~~~~~--------~~~vi~~~~~yhg~~~~~~ 145 (447)
.....++.+.+++++ ..+++++++++|+++|+. .+++.+.. +.++ +++|++.+++|+++.....
T Consensus 69 ~~g~~~lr~~ia~~~-~~~~~~i~~t~G~~~al~~~~~~~~l~~-----~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~ 142 (423)
T 3ez1_A 69 VAGLPSARALFAGYL-DVKAENVLVWNNSSLELQGLVLTFALLH-----GVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQ 142 (423)
T ss_dssp TTCCHHHHHHHHHHT-TSCGGGEEECSSCHHHHHHHHHHHHHHT-----CCTTCSSCGGGGCCEEEEEESCCHHHHHHHH
T ss_pred CCChHHHHHHHHHHh-CCChhhEEEeCCcHHHHHHHHHHHHHhc-----cCCCccccccCCCCEEEEcCCCcHHHHHHHH
Confidence 344578888898887 356679999999999997 78776541 0022 4789999999999865544
Q ss_pred cccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEcc-ccCCCCCccCCh
Q 013204 146 SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEP-VIGAGGVIPPPA 224 (447)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~ep-v~~~~G~~~~~~ 224 (447)
..+.... .++.... + .++++|++.+.. ..++++|+++| .++.+|. ..+.
T Consensus 143 ~~g~~~~-------------~v~~~~~------g--------~d~~~l~~~l~~--~~~~~~v~~~~~~~NPtG~-~~~~ 192 (423)
T 3ez1_A 143 TLGFELL-------------TVDMQSD------G--------PDVDAVERLAGT--DPSVKGILFVPTYSNPGGE-TISL 192 (423)
T ss_dssp HHTCEEE-------------EEEEETT------E--------ECHHHHHHHHHS--CTTEEEEEECSSSCTTTCC-CCCH
T ss_pred HcCCEEE-------------eccCCCC------C--------CCHHHHHHHHhh--CCCceEEEECCCCCCCCCc-CCCH
Confidence 4332111 1111000 0 114778887752 23577887775 4555664 4567
Q ss_pred hHHHHHHHHH-HhcCCEEEEehhhcCCCccc---ccc-c-cc------cCCCCCCeeeecccCCCcccceeEEEeChhHH
Q 013204 225 TYFEKVQAVV-KKYDILFIADEVICAFGRLG---TMF-G-CD------KYSIKPDLVSFAKALSSAYMPIGAILVSPEVS 292 (447)
Q Consensus 225 ~~l~~l~~l~-~~~g~~li~DEv~~g~g~~g---~~~-~-~~------~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~ 292 (447)
+.+++|+++| ++||+++|+||+|+.+...+ ... . .. ..+....+.+|||.+..| +++|+++++++++
T Consensus 193 ~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G-~r~G~~~~~~~~~ 271 (423)
T 3ez1_A 193 EKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAG-AGLGFVASSEDNI 271 (423)
T ss_dssp HHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSS-SSCEEEEECHHHH
T ss_pred HHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCC-cceEEEEeCHHHH
Confidence 7799999999 99999999999998532222 110 1 11 112222355789985555 8999999999998
Q ss_pred HHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHH-Hh-----hhcHHHHHHHHHHHHHHhHhh-ccCCC-ceee-Eeee
Q 013204 293 EVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKI-YK-----ERNIVEQVNKIAPKFQDGVKA-FSDSP-IIGE-IRGT 363 (447)
Q Consensus 293 ~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~-~~-----~~~~~~~~~~~~~~l~~~L~~-l~~~~-~~~~-~~~~ 363 (447)
+.+... .+..+++.+++++.++.++++. .. -.+..+.++++.+.+.+.|.+ +...+ .+.. ....
T Consensus 272 ~~~~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~ 344 (423)
T 3ez1_A 272 RWLSKY-------LGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKG 344 (423)
T ss_dssp HHHHHH-------HHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSB
T ss_pred HHHHHH-------HhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCc
Confidence 888632 2334677788888888777764 11 012233444455555555544 33333 2222 2344
Q ss_pred eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-----------CCEEEEecCCCCCHHHHHHHHHHHHHH
Q 013204 364 GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-----------GDNIMMSPPFIMSPEEVDELISKYGKA 432 (447)
Q Consensus 364 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----------g~~iR~~~~~~~t~e~i~~~~~~l~~~ 432 (447)
|.++.+.+.... ...+.+.|.++||++.++ .+.+||+++.. ++++|++++++|+++
T Consensus 345 g~~~~~~~~~~~------------~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~ 411 (423)
T 3ez1_A 345 GYFISLDTAEPV------------ADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRP-PVEEVRTAMQVVAAC 411 (423)
T ss_dssp SSCEEEEESSSC------------HHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSS-CHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCc------------HHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHH
Confidence 667777775421 445788899999999872 25699998654 999999999999999
Q ss_pred HHHHHH
Q 013204 433 LKATEE 438 (447)
Q Consensus 433 l~~~~~ 438 (447)
++++..
T Consensus 412 l~~~~~ 417 (423)
T 3ez1_A 412 IRLATE 417 (423)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.4e-23 Score=201.90 Aligned_cols=325 Identities=14% Similarity=0.139 Sum_probs=212.8
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcce
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 129 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~ 129 (447)
.+|++.+++.+++.. ..+. ...+...++++++++.+.....+.+++++||++|++.+++.+. .++++
T Consensus 24 ~~~~v~~a~~~~~~~--~~~~---~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~--------~~gd~ 90 (411)
T 3nnk_A 24 ADPRVLRAMSSQLIG--QYDP---AMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAI--------RPGDK 90 (411)
T ss_dssp CCHHHHHHHTSCCCC--TTCH---HHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHC--------CTTCE
T ss_pred CCHHHHHHhhccccc--cccH---HHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhc--------CCCCE
Confidence 578888777654311 1110 1124557888888888753333348899999999999999773 34588
Q ss_pred EEEEcCCCccch-hhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEE
Q 013204 130 FIARQKSYHGST-LIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAF 208 (447)
Q Consensus 130 vi~~~~~yhg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~v 208 (447)
|++.+++||+.. .......|... ..++.+..+. .++++|++.+... ++++|
T Consensus 91 Vl~~~~~~~~~~~~~~~~~~g~~~------------~~v~~~~~~~-------------~d~~~l~~~i~~~---~~~~v 142 (411)
T 3nnk_A 91 VLVPVFGRFGHLLCEIARRCRAEV------------HTIEVPWGEV-------------FTPDQVEDAVKRI---RPRLL 142 (411)
T ss_dssp EEEEECSHHHHHHHHHHHHTTCEE------------EEEECCTTCC-------------CCHHHHHHHHHHH---CCSEE
T ss_pred EEEecCCchHHHHHHHHHHcCCeE------------EEEecCCCCC-------------CCHHHHHHHHhhC---CCeEE
Confidence 999999999842 22222222211 1122211110 0147788887642 45688
Q ss_pred EEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeee--cccCCCcccceeEEE
Q 013204 209 IAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF--AKALSSAYMPIGAIL 286 (447)
Q Consensus 209 i~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~--sK~l~gg~~~~g~~~ 286 (447)
+++++++.+|.+.+ +++|.++|++||+++|+||+++ ++.. .+....+ .+|++++ +|++.++ .++|+++
T Consensus 143 ~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~~~~--~~~~~~~--~~d~~~~s~~K~l~~~-~g~g~~~ 212 (411)
T 3nnk_A 143 LTVQGDTSTTMLQP----LAELGEICRRYDALFYTDATAS-LGGN--PLETDVW--GLDAVSAGMQKCLGGP-SGTSPIT 212 (411)
T ss_dssp EEESEETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-BTTB--CCCTTTT--TCSEEECCSTTTTCCC-SSEEEEE
T ss_pred EEeCCCCCcceecc----HHHHHHHHHHcCCEEEEECCcc-cCCc--ccchhcc--CCcEEEecCccccCCC-CceEEEE
Confidence 88888888888766 8899999999999999999987 3322 2222222 3677654 5888777 5899999
Q ss_pred eChhHHHHhhhcc----------------CCCCc-------------cCcCCCCCCcHHHHHHHHHHHHHHhhh---cHH
Q 013204 287 VSPEVSEVIHSQS----------------NTLGS-------------FSHGFTYSGHPVSCAVAIEALKIYKER---NIV 334 (447)
Q Consensus 287 ~~~~~~~~~~~~~----------------~~~~~-------------~~~~~t~~~~~~~~~aa~a~l~~~~~~---~~~ 334 (447)
+++++++.+.... ..... .......+.+..+++++.++++.+.+. +..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~ 292 (411)
T 3nnk_A 213 LSARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGI 292 (411)
T ss_dssp ECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred ECHHHHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999988876421 00000 001123455777888777888876543 566
Q ss_pred HHHHHHHHHHHHhHhhccCCCceee-EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc-CceEEee-----CC
Q 013204 335 EQVNKIAPKFQDGVKAFSDSPIIGE-IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH-GMLVRVS-----GD 407 (447)
Q Consensus 335 ~~~~~~~~~l~~~L~~l~~~~~~~~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~-----g~ 407 (447)
++++++.+++.+.|+++ ...+... ....+.++.+.+++.. ....+.+.|+++ ||.+.++ ++
T Consensus 293 ~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~l~~~~gi~v~~g~~~~~~~ 360 (411)
T 3nnk_A 293 ARHKLHGDALVKGIQAM-GLETFGDLKHKMNNVLGVVIPQGI-----------NGDQARKLMLEDFGIEIGTSFGPLHGK 360 (411)
T ss_dssp HHHHHHHHHHHHHHHHT-TCCBCSCGGGBCSSEEEEECCTTC-----------CHHHHHHHHHHHHSEEEEECCGGGTTT
T ss_pred HHHHHHHHHHHHHHHHc-CCEeCCCcccccccEEEEECCCCC-----------CHHHHHHHHHHhcCeEEeCccCCCCCC
Confidence 78888888999988876 3222211 1223556666654321 145678888876 9999874 36
Q ss_pred EEEEec-CCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 408 NIMMSP-PFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 408 ~iR~~~-~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
.+|+++ ++.+++++|++++++|+++++++.
T Consensus 361 ~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~ 391 (411)
T 3nnk_A 361 VWRIGTMGYNARKDCVMTTLSALEAVLNYLK 391 (411)
T ss_dssp EEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEeCccCcCCHHHHHHHHHHHHHHHHHcC
Confidence 799998 777899999999999999997653
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-22 Score=198.46 Aligned_cols=338 Identities=12% Similarity=0.073 Sum_probs=221.1
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDT 110 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~ 110 (447)
+...|+|..+. ++.+|++++++.+.+... .+ ....+...++.+++++++. .+.+++++++||++|+..
T Consensus 7 ~~~~yl~~~~~------~~~~~~v~~a~~~~~~~~-~~----~~~~~~~~~l~~~la~~~g-~~~~~v~~t~g~t~a~~~ 74 (392)
T 2z9v_A 7 ADPVITLTAGP------VNAYPEVLRGLGRTVLYD-YD----PAFQLLYEKVVDKAQKAMR-LSNKPVILHGEPVLGLEA 74 (392)
T ss_dssp SCCSEECSSSC------CCCCHHHHHHTTSCCCCT-TS----HHHHHHHHHHHHHHHHHTT-CSSCCEEESSCTHHHHHH
T ss_pred CCcceeecCCC------cCCCHHHHHHHhcccccc-cc----HHHHHHHHHHHHHHHHHhC-CCCCEEEEeCCchHHHHH
Confidence 34578886432 357899999988766531 11 1123456788899998874 345799999999999999
Q ss_pred HHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhh-cccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHH
Q 013204 111 QVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAA-SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189 (447)
Q Consensus 111 Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (447)
+++.+. .++++|++.+++||+.....+ ...|.. +..++.+..+. .+
T Consensus 75 ~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~-------------~d 121 (392)
T 2z9v_A 75 AAASLI--------SPDDVVLNLASGVYGKGFGYWAKRYSPH------------LLEIEVPYNEA-------------ID 121 (392)
T ss_dssp HHHHHC--------CTTCCEEEEESSHHHHHHHHHHHHHCSC------------EEEEECCTTSC-------------CC
T ss_pred HHHHhc--------CCCCEEEEecCCcccHHHHHHHHHcCCc------------eEEeeCCCCCC-------------CC
Confidence 999763 334789999999988632211 111211 11122211000 11
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV 269 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v 269 (447)
++++++.+... +++++|+++++++.+|.+.+ +++|.++|++||+++|+||+|+ +|.. ...... ..+|++
T Consensus 122 ~~~l~~~l~~~--~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~--~~~~~~--~~~d~~ 190 (392)
T 2z9v_A 122 PQAVADMLKAH--PEITVVSVCHHDTPSGTINP----IDAIGALVSAHGAYLIVDAVSS-FGGM--KTHPED--CKADIY 190 (392)
T ss_dssp HHHHHHHHHHC--TTCCEEEEESEEGGGTEECC----HHHHHHHHHHTTCEEEEECTTT-BTTB--SCCGGG--GTCSEE
T ss_pred HHHHHHHHhcC--CCCcEEEEeccCCCCceecc----HHHHHHHHHHcCCeEEEEcccc-cCCc--cccccc--ccceEE
Confidence 47788877541 24567888888888887776 8999999999999999999997 4432 112222 246877
Q ss_pred ee--cccCCCcccceeEEEeChhHHHHhhhcc-----CCC------Cc--cCcCCCCCCcHHHHHHHHHHHHHHhhh---
Q 013204 270 SF--AKALSSAYMPIGAILVSPEVSEVIHSQS-----NTL------GS--FSHGFTYSGHPVSCAVAIEALKIYKER--- 331 (447)
Q Consensus 270 ~~--sK~l~gg~~~~g~~~~~~~~~~~~~~~~-----~~~------~~--~~~~~t~~~~~~~~~aa~a~l~~~~~~--- 331 (447)
++ +|.++++ .++|++++++++++.+.... ... .. .......+.++.+++++.++++.+.+.
T Consensus 191 ~~s~sK~~~~~-~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~ 269 (392)
T 2z9v_A 191 VTGPNKCLGAP-PGLTMMGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPE 269 (392)
T ss_dssp EECSSSTTCCC-SCCEEEEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHH
T ss_pred EecCcccccCC-CceeEEEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHH
Confidence 64 6988876 57899999999888775310 000 00 001123345677777777788766543
Q ss_pred cHHHHHHHHHHHHHHhHhhccCCCcee-e-EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc-CceEEee---
Q 013204 332 NIVEQVNKIAPKFQDGVKAFSDSPIIG-E-IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH-GMLVRVS--- 405 (447)
Q Consensus 332 ~~~~~~~~~~~~l~~~L~~l~~~~~~~-~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~--- 405 (447)
+..++++++.+++++.|+++ +..+.. . ....+.++.+.+.... ....+.+.|.++ ||.+.++
T Consensus 270 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~L~~~~gi~v~~g~~~ 337 (392)
T 2z9v_A 270 AVWARHALTAKAMRAGVTAM-GLSVWAASDSIASPTTTAVRTPDGV-----------DEKALRQAARARYGVVFSSGRGE 337 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TCCBSSSSGGGBCTTEEEEECCTTC-----------CHHHHHHHHHHHHCEECEECCGG
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCeeccCCccccCCceEEEECCCCC-----------CHHHHHHHHHhcCCEEEecCCCC
Confidence 45678888888888888876 333221 1 0113555566654211 145688889887 9999875
Q ss_pred --CCEEEEecCC-CCCHHHHHHHHHHHHHHHHHHH
Q 013204 406 --GDNIMMSPPF-IMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 406 --g~~iR~~~~~-~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
.+.+|+++.. .++++++++++++|++++++++
T Consensus 338 ~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~~ 372 (392)
T 2z9v_A 338 TLGKLTRIGHMGPTAQPIYAIAALTALGGAMNAAG 372 (392)
T ss_dssp GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCeEEEeCcccccCHHHHHHHHHHHHHHHHHcC
Confidence 3679999643 7899999999999999998764
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=197.16 Aligned_cols=318 Identities=15% Similarity=0.147 Sum_probs=197.8
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCC-CeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcc
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKM-AKVFFTNSGSEANDTQVKLVWYYNNALGRPNKK 128 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~ 128 (447)
.+|++++++.+++.. ..+. ...+...++++++++.+..... +.+++++||++|++.+++.+. .+++
T Consensus 30 ~~~~v~~a~~~~~~~--~~~~---~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~--------~~gd 96 (376)
T 3f0h_A 30 SSEEVRAIGAEQVPY--FRTT---EFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF--------TKKD 96 (376)
T ss_dssp CCHHHHHHHTSCCCC--CSSH---HHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC--------CTTC
T ss_pred CcHHHHHHhcCCCCC--CCCH---HHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc--------CCCC
Confidence 478888887665432 1111 1224556778888888743222 345558899999999999764 3457
Q ss_pred eEEEEcCCCccchhhhh-cccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEE
Q 013204 129 KFIARQKSYHGSTLIAA-SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAA 207 (447)
Q Consensus 129 ~vi~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~ 207 (447)
+||+.++.||+...... ...+... ..++.+..+. . +++++++.+. .++++
T Consensus 97 ~vi~~~~~~~~~~~~~~~~~~g~~~------------~~v~~~~~~~-----~--------d~~~l~~~~~----~~~~~ 147 (376)
T 3f0h_A 97 KVLVIDGGSFGHRFVQLCEIHEIPY------------VALKLEHGKK-----L--------TKEKLYEYDN----QNFTG 147 (376)
T ss_dssp CEEEEESSHHHHHHHHHHHHTTCCE------------EEEECCTTCC-----C--------CHHHHHTTTT----SCCCE
T ss_pred eEEEEeCChhhHHHHHHHHHcCCce------------EEEeCCCCCC-----C--------CHHHHHHhhc----cCceE
Confidence 89999998888643311 1112111 1122211110 0 1356665432 35677
Q ss_pred EEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCcccceeEE
Q 013204 208 FIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSAYMPIGAI 285 (447)
Q Consensus 208 vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg~~~~g~~ 285 (447)
|+++++++.+|.+.+ +++|+++|++||+++|+||+|+.+++. +..+.++ .|++ +++|.++++ .++|++
T Consensus 148 v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~~~~~---~~~~~~~--~d~~~~s~~K~l~~~-~G~g~~ 217 (376)
T 3f0h_A 148 LLVNVDETSTAVLYD----TMMIGEFCKKNNMFFVCDCVSAFLADP---FNMNECG--ADVMITGSQKVLACP-PGISVI 217 (376)
T ss_dssp EEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSC---CCHHHHT--CSEEEEETTTTTCCC-SSCEEE
T ss_pred EEEecccCCcceecC----HHHHHHHHHHcCCEEEEEcCccccCcc---ccccccC--ccEEEecCcccccCC-CceEEE
Confidence 888888888887776 999999999999999999999854332 2233334 3555 456999866 688999
Q ss_pred EeChhHHHHhhhccCCCCc----------cCcCCCCCCcHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHhHhhc
Q 013204 286 LVSPEVSEVIHSQSNTLGS----------FSHGFTYSGHPVSCAVAIEALKIYKER----NIVEQVNKIAPKFQDGVKAF 351 (447)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~----------~~~~~t~~~~~~~~~aa~a~l~~~~~~----~~~~~~~~~~~~l~~~L~~l 351 (447)
++++++++.+......... ......++.+..+++++.++++.+.+. +..++.+++.+++++.|+++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 297 (376)
T 3f0h_A 218 VLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDL 297 (376)
T ss_dssp EECHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred EECHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999998887632110000 001123445555656677778766554 34455566666666666654
Q ss_pred cCCCceeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc-CceEEeeC-----CEEEEecCCCCCHHHHHH
Q 013204 352 SDSPIIGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH-GMLVRVSG-----DNIMMSPPFIMSPEEVDE 424 (447)
Q Consensus 352 ~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~g-----~~iR~~~~~~~t~e~i~~ 424 (447)
++.... .....++.+.. ... ....+.+.|+++ ||.+.++. +.+|++++..+|++++++
T Consensus 298 ---~~~~~~~~~~~~~~~~~~-~~~-----------~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~ 362 (376)
T 3f0h_A 298 ---PFELVSESPANGVTSVHP-TTA-----------NAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTT 362 (376)
T ss_dssp ---SEEECCSSBBTTEEEEEE-SSS-----------CHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHH
T ss_pred ---CCccCccccCceEEEEeC-CCC-----------CHHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHH
Confidence 211111 11222222221 111 145688889988 99988752 569999999999999999
Q ss_pred HHHHHHHHHH
Q 013204 425 LISKYGKALK 434 (447)
Q Consensus 425 ~~~~l~~~l~ 434 (447)
++++|+++++
T Consensus 363 ~~~~l~~~l~ 372 (376)
T 3f0h_A 363 LVNAFKDLQK 372 (376)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-22 Score=196.95 Aligned_cols=339 Identities=14% Similarity=0.131 Sum_probs=213.0
Q ss_pred EEEecCCccccccCCCCCHHHHHHHHHHHhcCCccc----ccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHH
Q 013204 34 KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYH----SFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEAND 109 (447)
Q Consensus 34 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~ 109 (447)
.|+|+.++ +..+|++.+++.+.+.+..... .......+...++++++++++. .+.+++++++||++|++
T Consensus 2 iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~i~~~~g~~~a~~ 74 (382)
T 4hvk_A 2 AYFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVN-GGGGTVVFTSGATEANN 74 (382)
T ss_dssp CBCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTT-CTTEEEEEESSHHHHHH
T ss_pred EeecCCCc------CCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcC-CCcCeEEEECCchHHHH
Confidence 37787554 3578999999999987632211 1001123445678888888873 45678999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcc--cCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASL--SGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
.+++.+...... +++.|++.++.|++........ .|... ..++....+.
T Consensus 75 ~~~~~~~~~~~~----~gd~vi~~~~~~~~~~~~~~~~~~~g~~~------------~~v~~~~~~~------------- 125 (382)
T 4hvk_A 75 LAIIGYAMRNAR----KGKHILVSAVEHMSVINPAKFLQKQGFEV------------EYIPVGKYGE------------- 125 (382)
T ss_dssp HHHHHHHHHHGG----GCCEEEEETTCCHHHHHHHHHHHHTTCEE------------EEECBCTTSC-------------
T ss_pred HHHHHhhhhhcC----CCCEEEECCCCcHHHHHHHHHHHhcCCEE------------EEeccCCCCC-------------
Confidence 999976432111 2468888888888765433221 12111 1122111100
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCC
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPD 267 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d 267 (447)
.++++|++.+. +++++|+++++++.+|.+.+ +++|.++|++||+ +|+||+|+ ++.. ....... .+|
T Consensus 126 ~d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~-li~D~a~~-~~~~--~~~~~~~--~~d 191 (382)
T 4hvk_A 126 VDVSFIDQKLR----DDTILVSVQHANNEIGTIQP----VEEISEVLAGKAA-LHIDATAS-VGQI--EVDVEKI--GAD 191 (382)
T ss_dssp BCHHHHHHHCC----TTEEEEECCSBCTTTCBBCC----HHHHHHHHSSSSE-EEEECTTT-BTTB--CCCHHHH--TCS
T ss_pred cCHHHHHHHhc----cCceEEEEECCCCCceeeCC----HHHHHHHHHHcCE-EEEEhHHh-cCCC--CCCchhc--CCC
Confidence 01367777664 35789999999888888776 9999999999999 99999986 4322 1112222 357
Q ss_pred eee--ecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh--hcHHHHHHHHHHH
Q 013204 268 LVS--FAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE--RNIVEQVNKIAPK 343 (447)
Q Consensus 268 ~v~--~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~--~~~~~~~~~~~~~ 343 (447)
+++ ++|.++ + .++|+++++++. .+..............+.+.++.+++++.++++.+.+ ++..++.+++.++
T Consensus 192 ~~~~s~~K~~g-~-~g~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~ 267 (382)
T 4hvk_A 192 MLTISSNDIYG-P-KGVGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDR 267 (382)
T ss_dssp EEEEESGGGTS-C-TTCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeHHHhcC-C-CceEEEEEcCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 775 459543 3 468888887764 1111000000001112344567777777777775543 4566777778888
Q ss_pred HHHhHhhccCCCceeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-----------------
Q 013204 344 FQDGVKAFSDSPIIGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS----------------- 405 (447)
Q Consensus 344 l~~~L~~l~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----------------- 405 (447)
+.+.|++++...+.... ...+.++.+.+.... ...+.+.|.++||.+.++
T Consensus 268 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~ 335 (382)
T 4hvk_A 268 IIDNVLKIEESYLNGHPEKRLPNNVNVRFSYIE------------GESIVLSLDMAGIQASTGSACSSKTLQPSHVLMAC 335 (382)
T ss_dssp HHHHHTTSTTEEECSCSSSBCTTEEEEEETTCC------------HHHHHHHHHHTTCBCBCC--------CCCHHHHHT
T ss_pred HHHHHhcCCCeEEeCCccccCCCEEEEEECCCC------------HHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHc
Confidence 88888765322111110 111234455543211 456888999999998864
Q ss_pred -------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 406 -------GDNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 406 -------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
.+.+|++++..+|++++++++++|+++++++++
T Consensus 336 g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~~~ 375 (382)
T 4hvk_A 336 GLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp TCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 357999999889999999999999999988765
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-23 Score=203.50 Aligned_cols=341 Identities=12% Similarity=0.044 Sum_probs=205.7
Q ss_pred CCEEEecCCccccccCCCCC--HHHHHHHHH-HHhcCC-cccccCcCCChHHHHHHHHHHHhcCc--C---CCC--eEEE
Q 013204 32 GKKYLDSLAGLWCTALGGSE--PRLVAAATA-QLNTLP-FYHSFWNRTTKPSLDLAKELLEMFTA--S---KMA--KVFF 100 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~--p~v~~a~~~-~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~--~---~~~--~v~~ 100 (447)
...++||+.|.+..+.|+.+ |++.+++.+ .+.+.. ..+. +.....++.+.+++++.. . +++ ++++
T Consensus 25 ~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~----~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~ 100 (397)
T 3fsl_A 25 RSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYL----PMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQ 100 (397)
T ss_dssp CSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCC----CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEE
T ss_pred CCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCC----CCCchHHHHHHHHHHHhcCCcccccccceEEEE
Confidence 34689999886555566655 899999999 886522 1222 112234455555555421 1 456 8999
Q ss_pred eCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCC--CCcccCCCC
Q 013204 101 TNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDC--PHYWRYAHP 178 (447)
Q Consensus 101 ~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 178 (447)
++||++|++.++++.... .++++|++.+++|++........+... ..++. ++.+.
T Consensus 101 t~g~~~a~~~~~~~~~~~------~~gd~vl~~~p~~~~~~~~~~~~g~~~-------------~~~~~~~~~~~~---- 157 (397)
T 3fsl_A 101 TLGGSGALKVGADFLKRY------FPESGVWVSDPTWENHVAIFAGAGFEV-------------STYPWYDEATNG---- 157 (397)
T ss_dssp ESHHHHHHHHHHHHHHHH------CTTCCEEEESSCCHHHHHHHHHTTCCE-------------EEECCEETTTTE----
T ss_pred cCCcHHHHHHHHHHHHhc------CCCCeEEEeCCCchhHHHHHHHcCCce-------------EEEeeeeccCCc----
Confidence 999999999998754322 345789999999998865554433221 11111 00000
Q ss_pred CCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccc--cc
Q 013204 179 GETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLG--TM 256 (447)
Q Consensus 179 ~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g--~~ 256 (447)
.+++++++.+.+.. +.+++++++..++.+|. ..+.+.+++|.++|++||+++|+||+|+++...+ ..
T Consensus 158 ---------~d~~~l~~~l~~~~-~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~ 226 (397)
T 3fsl_A 158 ---------VRFNDLLATLKTLQ-AGSIVLLHPCCHNPTGA-DLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDA 226 (397)
T ss_dssp ---------ECHHHHHHHHTTCC-TTCEEEECSSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGG
T ss_pred ---------CcHHHHHHHHHhCC-CCCEEEEeCCCCCCCCc-CCCHHHHHHHHHHHHhCCEEEEEecCchhhccCccccc
Confidence 01477888776533 34556666666666664 5677889999999999999999999999886542 11
Q ss_pred cccccC-CCCCC---eeeecccCCCcccceeEEEe---ChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHH-
Q 013204 257 FGCDKY-SIKPD---LVSFAKALSSAYMPIGAILV---SPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIY- 328 (447)
Q Consensus 257 ~~~~~~-~~~~d---~v~~sK~l~gg~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~- 328 (447)
.....+ +..++ +.++||.++.+++|+|++++ ++++++.+.... +......+...+.+++.++.+.++..
T Consensus 227 ~~~~~~~~~~~~~i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~ 303 (397)
T 3fsl_A 227 YAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQL---KATVRRNYSSPPNFGAQVVAAVLNDEA 303 (397)
T ss_dssp HHHHHHHHTTCCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHH---HHHHHTTTSSCCSHHHHHHHHHHTSHH
T ss_pred HHHHHHHhcCCCEEEEecccccccCcCCCeeEEEEecCCHHHHHHHHHHH---HHHHHhccCCCCHHHHHHHHHHhcCHH
Confidence 111111 12223 33689999843389999974 455555432110 01111223344556666555555421
Q ss_pred -------hhhcHHHHHHHHHHHHHHhHhhccCC-CceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCc
Q 013204 329 -------KERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGM 400 (447)
Q Consensus 329 -------~~~~~~~~~~~~~~~l~~~L~~l~~~-~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 400 (447)
.-++..++++++.+++.+.|+++... ++.......|.+..+.+. ...+.+.+.++||
T Consensus 304 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~gi 368 (397)
T 3fsl_A 304 LKASWLKEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLS---------------AAQVDRLREEFGV 368 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCTHHHHCCSSEEECCCC---------------HHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeecCCceEEEecCCC---------------HHHHHHHHHhCCE
Confidence 12345677788888888888876211 111111122334333321 2346667788999
Q ss_pred eEEeeCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 013204 401 LVRVSGDNIMMSPPFIMSPEEVDELISKYGKA 432 (447)
Q Consensus 401 ~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~ 432 (447)
++.+++ |+++. .+++++|++++++|+++
T Consensus 369 ~v~~g~---Ris~~-~~~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 369 YLIASG---RMCVA-GLNTANVQRVAKAFAAV 396 (397)
T ss_dssp ECCTTC---EEEGG-GCCTTTHHHHHHHHHHH
T ss_pred EECCCC---eEEEE-ecCHhhHHHHHHHHHhh
Confidence 998765 88864 44778899999999875
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-22 Score=190.97 Aligned_cols=316 Identities=14% Similarity=0.129 Sum_probs=209.0
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDT 110 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~ 110 (447)
+.+.++||.++. +++| .+|.+.+++.+.......+ +.....++.+.+++++ +.+.+++++++|+++++..
T Consensus 14 ~~~~~i~l~~n~--~~~~-~~~~v~~a~~~~~~~~~~y------~~~~~~~lr~~la~~~-~~~~~~i~~t~G~~~~l~~ 83 (337)
T 3p1t_A 14 AAAQAVCLAFNE--NPEA-VEPRVQAAIAAAAARINRY------PFDAEPRVMRKLAEHF-SCPEDNLMLVRGIDECFDR 83 (337)
T ss_dssp CCCCCEECSSCC--CCSC-CCHHHHHHHHHHGGGTTSC------CTTHHHHHHHHHHHHH-TSCGGGEEEESHHHHHHHH
T ss_pred CCCCceEeeCCC--CCCC-CCHHHHHHHHHhhhhhccC------CCCchHHHHHHHHHHh-CcCHHHEEEeCCHHHHHHH
Confidence 456799998775 6777 6899999999988753222 3456788999999987 3466799999999999999
Q ss_pred HHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHH
Q 013204 111 QVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190 (447)
Q Consensus 111 Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (447)
+++.+ + +++|++.+++|++........ |... ..++..+.+. . ++
T Consensus 84 ~~~~~---------~-gd~vl~~~p~~~~~~~~~~~~-g~~~------------~~v~~~~~~~-----~--------d~ 127 (337)
T 3p1t_A 84 ISAEF---------S-SMRFVTAWPGFDGYRARIAVS-GLRH------------FEIGLTDDLL-----L--------DP 127 (337)
T ss_dssp HHHHS---------T-TSEEEEESSSCSHHHHHHTTS-CCEE------------EEECBCTTSS-----B--------CH
T ss_pred HHHhc---------C-CCeEEEeCCCcHHHHHHHHHc-CCEE------------EEecCCCCCC-----C--------CH
Confidence 98865 2 368999999999876544332 2211 1122111100 0 02
Q ss_pred HHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeee
Q 013204 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS 270 (447)
Q Consensus 191 ~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~ 270 (447)
+++++. .+ +++++++..++.+|.+.+ ++++.++|+++++ +|+||+|.+|+..+... ....+....+.+
T Consensus 128 ~~l~~~-----~~-~~~v~i~~p~nptG~~~~----~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~-~~~~~~~i~~~S 195 (337)
T 3p1t_A 128 NDLAQV-----SR-DDCVVLANPSNPTGQALS----AGELDQLRQRAGK-LLIDETYVDYSSFRARG-LAYGENELVFRS 195 (337)
T ss_dssp HHHTTC-----CT-TEEEEEESSCTTTCCCCC----HHHHHHHHHHCSE-EEEECTTGGGSSCSSSC-CCCBTTEEEEEE
T ss_pred HHHHhh-----cC-CCEEEEeCCCCCCCCCCC----HHHHHHHHHhCCc-EEEECCChhhccccccc-cccCCCEEEEee
Confidence 445442 22 345555555666677776 7889999999997 56699999775443211 111111112336
Q ss_pred ecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHhHh
Q 013204 271 FAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVEQVNKIAPKFQDGVK 349 (447)
Q Consensus 271 ~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~~~~~~~~~l~~~L~ 349 (447)
+||.++.+++++|++++++++++.+... ..+++.+++++.++.++++... -++..+++.++.+++.+.|+
T Consensus 196 ~sK~~g~~G~r~G~~~~~~~~~~~l~~~---------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~ 266 (337)
T 3p1t_A 196 FSKSYGLAGLRLGALFGPSELIAAMKRK---------QWFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALR 266 (337)
T ss_dssp SSSTTCCTTTCCEEEECCHHHHHHHHTT---------SCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhccCcchheEEEEeCHHHHHHHHhh---------cCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899973338999999999999888631 1345677888887777776322 12344555666677777777
Q ss_pred hccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-----CEEEEecCCCCCHHHHHH
Q 013204 350 AFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-----DNIMMSPPFIMSPEEVDE 424 (447)
Q Consensus 350 ~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-----~~iR~~~~~~~t~e~i~~ 424 (447)
++ +..+ ..+.|.++.+...+ ...+.+.|.++||.+.++. +.+|++.. +++++++
T Consensus 267 ~~-g~~~---~~~~~~~~~~~~~~--------------~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~~~~ 325 (337)
T 3p1t_A 267 GL-GYRV---ASSEANFVLVENAA--------------GERTLRFLRERGIQVKDAGQFGLHHHIRISIG---REEDNDR 325 (337)
T ss_dssp HT-TCCB---CCCSSSEEEEECTT--------------THHHHHHHHHTTEECEEGGGGTCCSEEEEECC---CHHHHHH
T ss_pred HC-cCEE---CCCCCeEEEEEcCC--------------HHHHHHHHHHCCeEEEECccCCCCCeEEEecC---CHHHHHH
Confidence 65 2222 23456666555432 1346778889999999763 67999943 8999999
Q ss_pred HHHHHHHHHH
Q 013204 425 LISKYGKALK 434 (447)
Q Consensus 425 ~~~~l~~~l~ 434 (447)
++++|++.++
T Consensus 326 l~~al~~~~~ 335 (337)
T 3p1t_A 326 LLAALAEYSD 335 (337)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhh
Confidence 9999987653
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-22 Score=198.58 Aligned_cols=340 Identities=14% Similarity=0.106 Sum_probs=218.5
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCC-eEEEeCChhhHH
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMA-KVFFTNSGSEAN 108 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~v~~~~sGseA~ 108 (447)
.+|+.|+|..+. ++ .+|++.+++.+++... +. ....+...++.+++++++. .+.+ ++++++||++|+
T Consensus 16 ~~~~~~~~~~g~-----~~-~~~~v~~a~~~~~~~~--~~---~~~~~~~~~l~~~la~~~g-~~~~~~i~~~~g~t~a~ 83 (393)
T 2huf_A 16 VTPNKLLMGPGP-----SN-APQRVLDAMSRPILGH--LH---PETLKIMDDIKEGVRYLFQ-TNNIATFCLSASGHGGM 83 (393)
T ss_dssp CCCCCEECSSSC-----CC-CCHHHHHHTTSCCCCT--TS---HHHHHHHHHHHHHHHHHHT-CCCSEEEEESSCHHHHH
T ss_pred CCCCeEEecCCC-----CC-CCHHHHHHHHhhhccC--CC---HHHHHHHHHHHHHHHHHhC-CCCCcEEEEcCcHHHHH
Confidence 467777775433 22 6899998887765431 11 1123566788899998874 3443 799999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhh-cccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 109 DTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAA-SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 109 ~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
+.+++.+. .++++|++.+++||+...... ...|.. +..++.+..+.
T Consensus 84 ~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~------------- 130 (393)
T 2huf_A 84 EATLCNLL--------EDGDVILIGHTGHWGDRSADMATRYGAD------------VRVVKSKVGQS------------- 130 (393)
T ss_dssp HHHHHHHC--------CTTCEEEEEESSHHHHHHHHHHHHTTCE------------EEEEECCTTCC-------------
T ss_pred HHHHHHHh--------CCCCEEEEECCCcchHHHHHHHHHcCCe------------eEEEeCCCCCC-------------
Confidence 99999773 234789999999988532111 111211 11122211000
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCC
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPD 267 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d 267 (447)
.+++++++.+... ++++|+++++++.+|.+.+ +++|.++|++||+++|+||+|+ +|.. ..... ...+|
T Consensus 131 ~d~~~l~~~i~~~---~~~~v~~~~~~nptG~~~~----l~~i~~~~~~~~~~li~D~a~~-~~~~--~~~~~--~~~~d 198 (393)
T 2huf_A 131 LSLDEIRDALLIH---KPSVLFLTQGDSSTGVLQG----LEGVGALCHQHNCLLIVDTVAS-LGGA--PMFMD--RWEID 198 (393)
T ss_dssp CCHHHHHHHHHHH---CCSEEEEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTB--CCCTT--TTTCS
T ss_pred CCHHHHHHHHhcc---CCcEEEEEccCCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCC--Ccchh--hcCcc
Confidence 0137788777631 3457777788888887776 8999999999999999999986 5433 22222 23478
Q ss_pred eeee--cccCCCcccceeEEEeChhHHHHhhhccCCCCccC---------------cCCC-CCCcHHHHHHHHHHHHHHh
Q 013204 268 LVSF--AKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFS---------------HGFT-YSGHPVSCAVAIEALKIYK 329 (447)
Q Consensus 268 ~v~~--sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~---------------~~~t-~~~~~~~~~aa~a~l~~~~ 329 (447)
++++ +|.++|+ .++|++++++++++.+.........+. ...+ .+.+..+++++.++++.+.
T Consensus 199 ~~~~s~sK~l~g~-~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~ 277 (393)
T 2huf_A 199 AMYTGSQKVLGAP-PGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMAC 277 (393)
T ss_dssp EEECCSSSTTCCC-SSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHH
T ss_pred EEEECCCcccccC-CCeEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHH
Confidence 8765 5988765 467999999999888764210000100 1112 2446666666667787664
Q ss_pred h---hcHHHHHHHHHHHHHHhHhhccCCCceeeEe-eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc-CceEEe
Q 013204 330 E---RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIR-GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH-GMLVRV 404 (447)
Q Consensus 330 ~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~ 404 (447)
+ ++..++++++++++++.|+++ +..+..... ..+.++.+.+.... ....+.+.|+++ ||.+.+
T Consensus 278 ~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~L~~~~gi~v~~ 345 (393)
T 2huf_A 278 EEGLPALIARHEDCAKRLYRGLQDA-GFELYADPKDRLSTVTTIKVPQGV-----------DWLKAAQYAMKTYLVEISG 345 (393)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCTTEEEEECCTTC-----------CHHHHHHHHHHHHCEECBC
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCccccCCcEEEEEcCCCC-----------CHHHHHHHHHHhCCEEEec
Confidence 3 345678888888888888876 333322111 12335556654211 144678888765 999886
Q ss_pred e-----CCEEEEec-CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013204 405 S-----GDNIMMSP-PFIMSPEEVDELISKYGKALKATEER 439 (447)
Q Consensus 405 ~-----g~~iR~~~-~~~~t~e~i~~~~~~l~~~l~~~~~~ 439 (447)
+ .+.+|+++ ++..+++++++++++|++++++++.+
T Consensus 346 g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~~~~ 386 (393)
T 2huf_A 346 GLGPTAGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVKPD 386 (393)
T ss_dssp CCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCC-
T ss_pred CcccccCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHcCCC
Confidence 4 36799998 55678999999999999999887644
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-23 Score=207.09 Aligned_cols=352 Identities=13% Similarity=0.108 Sum_probs=222.9
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCC----cccccC-cCCChHHHHHHHHHHHhcCcCCCCeEEEeCChh
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP----FYHSFW-NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGS 105 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~----~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGs 105 (447)
++..|+|. +++|+.++.+.+++.+.+.... ..+... ....+...++.+++++.+. .++++|+|++|++
T Consensus 66 ~~~iyld~------~~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g-~~~~~v~~t~g~t 138 (465)
T 3e9k_A 66 ENAIYFLG------NSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVG-ANEKEIALMNALT 138 (465)
T ss_dssp CBCEECBT------TTSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHT-CCGGGEEECSCHH
T ss_pred CCeEEecC------CccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcC-CCcCCEEEECCHH
Confidence 35577775 4567777888777777664321 111100 0112334567788888763 4567999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhh---cccCCccccCCCCCCCCcceecCCCCcccCCCCCCCh
Q 013204 106 EANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAA---SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETE 182 (447)
Q Consensus 106 eA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (447)
+++..+++.+... + ..+++||+.++.||+...... ...|..... ..+...+.+..+.
T Consensus 139 ~al~~~~~~~~~~----~-~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~-------~~v~~~~~~~~~~-------- 198 (465)
T 3e9k_A 139 VNLHLLMLSFFKP----T-PKRYKILLEAKAFPSDHYAIESQLQLHGLNIEE-------SMRMIKPREGEET-------- 198 (465)
T ss_dssp HHHHHHHHHHCCC----C-SSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHH-------HEEEECCCTTCSS--------
T ss_pred HHHHHHHHHhccc----c-CCCCEEEEcCCcCCchHHHHHHHHHHcCCccee-------eeEEEecCCCCCc--------
Confidence 9999999876311 2 235679999999998643221 112211100 0000011111000
Q ss_pred hHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccC
Q 013204 183 EEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKY 262 (447)
Q Consensus 183 ~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~ 262 (447)
.+++++++.+.+.. +++++|+++++++.+|.+.+ +++|.++|++||+++|+|++|+ .|... ....
T Consensus 199 -----~d~~~l~~~i~~~~-~~~~lv~~~~~~n~tG~~~~----l~~i~~la~~~g~~vi~D~a~~-~g~~~--~~~~-- 263 (465)
T 3e9k_A 199 -----LRIEDILEVIEKEG-DSIAVILFSGVHFYTGQHFN----IPAITKAGQAKGCYVGFDLAHA-VGNVE--LYLH-- 263 (465)
T ss_dssp -----CCHHHHHHHHHHHG-GGEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC--CCHH--
T ss_pred -----cCHHHHHHHHHhcC-CCeEEEEEeCcccCcceeec----HHHHHHHHHHcCCEEEEEhhhh-cCCcC--Cchh--
Confidence 01378888886432 36889999999999998877 8999999999999999999997 43321 1111
Q ss_pred CCCCCeee--ecccCCCcccceeEEEeChhHHHHhhhccCCC--C----ccC--c----------CCCCCCcHHHHHHHH
Q 013204 263 SIKPDLVS--FAKALSSAYMPIGAILVSPEVSEVIHSQSNTL--G----SFS--H----------GFTYSGHPVSCAVAI 322 (447)
Q Consensus 263 ~~~~d~v~--~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~--~----~~~--~----------~~t~~~~~~~~~aa~ 322 (447)
....|+++ ++|.+.+|..++|++++++++.+.+....... + .+. . ....+++++++++..
T Consensus 264 ~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~ 343 (465)
T 3e9k_A 264 DWGVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLH 343 (465)
T ss_dssp HHTCCEEEECSSSTTCCCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHH
T ss_pred hcCCCEEEECcccccccCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHH
Confidence 22467775 45999644357899999998876553210000 0 000 0 001256778888888
Q ss_pred HHHHHHhh---hcHHHHHHHHHHHHHHhHhhc----------cCCCcee--eEeeeeeEEEEEeecCCCCCCCCCCCcch
Q 013204 323 EALKIYKE---RNIVEQVNKIAPKFQDGVKAF----------SDSPIIG--EIRGTGLILGTEFADNKSPNEPFPPEWGI 387 (447)
Q Consensus 323 a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l----------~~~~~~~--~~~~~g~~~~i~~~~~~~~~~~~~~~~~~ 387 (447)
++++.+.. +++.++..++.+++.+.|+++ .+..+.. +....|.++.+.+.. .
T Consensus 344 aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~-~------------ 410 (465)
T 3e9k_A 344 ASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSV-P------------ 410 (465)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECC-T------------
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecC-C------------
Confidence 88887764 456778888888888888774 1111111 112236777776652 1
Q ss_pred HHHHHHHHHHcCceEEeeC-CEEEEec-CCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 388 GAYFGAQCEKHGMLVRVSG-DNIMMSP-PFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 388 ~~~~~~~l~~~Gi~~~~~g-~~iR~~~-~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
...+.+.|.++||++...+ +.+|++| ++.+|++||+++++.|++++++.+
T Consensus 411 ~~~l~~~L~~~Gi~v~~~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~~~ 462 (465)
T 3e9k_A 411 NKDVFQELEKRGVVCDKRNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDSAE 462 (465)
T ss_dssp TCCHHHHHHTTTEECEEETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHCCEEEecCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHhcc
Confidence 1137788999999988664 7899999 899999999999999999987543
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.5e-23 Score=204.18 Aligned_cols=311 Identities=16% Similarity=0.107 Sum_probs=188.6
Q ss_pred HHHHHHHHHHhc----C-cCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCc-------------ceEEEE-cCCCcc
Q 013204 79 SLDLAKELLEMF----T-ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNK-------------KKFIAR-QKSYHG 139 (447)
Q Consensus 79 ~~~l~~~l~~~~----~-~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~-------------~~vi~~-~~~yhg 139 (447)
..++.+.+++++ . ..++++|+|++||++|+..+++.+.. +++ ..||+. ++.|++
T Consensus 85 ~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~-------~gd~~~~~~~~~~g~~~~vi~~~~p~~~~ 157 (444)
T 3if2_A 85 DSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGG-------AFVNEHSQDKESKSVDKSILLPLTPEYIG 157 (444)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSE-------EEECC-------CEEEEEEEESSSSCCGG
T ss_pred CHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhC-------CCccccccccccccccceEEEeCCCCccc
Confidence 345555555554 2 24678999999999999999997631 111 046654 889988
Q ss_pred chhhhhcccCCccccCCCCCCCCcceecCCCCc---ccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCC
Q 013204 140 STLIAASLSGLPALHQKFDLPAPFVLHTDCPHY---WRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGA 216 (447)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~ 216 (447)
+........... ..+ ..+..++.... +.+ . .++++|++.+....+ ++++|+++..++.
T Consensus 158 ~~~~~~~~~~~~----~~~---~~~~~~~~~~~~g~~~~---~--------~d~~~l~~~l~~~~~-~~~~v~i~~p~np 218 (444)
T 3if2_A 158 YSDVHVEGQHFA----AVL---PHIDEVTHDGEEGFFKY---R--------VDFEALENLPALKEG-RIGAICCSRPTNP 218 (444)
T ss_dssp GTTCCSSSCCEE----ECC---CEEEEEEETTEEEEEEE---E--------CCHHHHHTCHHHHTT-CEEEEEEESSCTT
T ss_pred hhhcccccchhh----ccC---ceEEecccccccCcccc---C--------CCHHHHHHHHHhcCC-CceEEEeCCCCCC
Confidence 754321100000 000 01111111100 000 0 013777776533333 4555555544555
Q ss_pred CCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccccc---ccCCCCCCeeeecccCCCcccceeEEEeChhHHH
Q 013204 217 GGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGC---DKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSE 293 (447)
Q Consensus 217 ~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~---~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~ 293 (447)
+|. ..+.+.+++|.++|++||+++|+||+|..+ ..+..+.- ...+...++.++||.+..| +++|++++++++++
T Consensus 219 tG~-~~~~~~l~~i~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G-~r~G~~~~~~~l~~ 295 (444)
T 3if2_A 219 TGN-VLTDEEMAHLAEIAKRYDIPLIIDNAYGMP-FPNIIYSDAHLNWDNNTILCFSLSKIGLPG-MRTGIIVADAKVIE 295 (444)
T ss_dssp TCC-CCCHHHHHHHHHHHHHTTCCEEEECTTCTT-TTCCBCSCCCCCCCTTEEEEEESTTTTCGG-GCCEEEECCHHHHH
T ss_pred CCC-cCCHHHHHHHHHHHHHCCCEEEEECCCCCc-ccccccccccccCCCCEEEEechhhccCCC-CceEEEEECHHHHH
Confidence 564 457788999999999999999999999742 22111110 1112223355789974445 89999999999988
Q ss_pred HhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-----hhcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEE
Q 013204 294 VIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-----ERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLIL 367 (447)
Q Consensus 294 ~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-----~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~ 367 (447)
.+... .+..++..+++++.++.+.++... .+...+.++++.+.+++.|.+. ....+.......|.++
T Consensus 296 ~~~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~ 368 (444)
T 3if2_A 296 AVSAM-------NAVVNLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFL 368 (444)
T ss_dssp HHHHH-------HHHHHSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEE
T ss_pred HHHHH-------HHhccCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEE
Confidence 87632 223355667788877777765321 1124456666777777777653 3333222223456677
Q ss_pred EEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC---------------CEEEEecCCCCCHHHHHHHHHHHHHH
Q 013204 368 GTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG---------------DNIMMSPPFIMSPEEVDELISKYGKA 432 (447)
Q Consensus 368 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g---------------~~iR~~~~~~~t~e~i~~~~~~l~~~ 432 (447)
.+.+..... ....+.+.|.++||.+.++. +.+||+++. ++++|++++++|+++
T Consensus 369 ~~~~~~~~~----------~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~--~~e~i~~~l~~l~~~ 436 (444)
T 3if2_A 369 WLWFKDLPI----------STLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA--DEQTLIDGIKVIGEV 436 (444)
T ss_dssp EEEETTCSS----------CHHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS--CHHHHHHHHHHHHHH
T ss_pred EEEcCCCCC----------CHHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeC--CHHHHHHHHHHHHHH
Confidence 777754211 14568888999999998742 369999775 999999999999999
Q ss_pred HHHHH
Q 013204 433 LKATE 437 (447)
Q Consensus 433 l~~~~ 437 (447)
++++.
T Consensus 437 ~~~~~ 441 (444)
T 3if2_A 437 VRELY 441 (444)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-23 Score=203.16 Aligned_cols=338 Identities=11% Similarity=0.039 Sum_probs=209.5
Q ss_pred CCCEEEecCCccccccCCC--CCHHHHHHHHH-HHhcCC-cccccCcCCChHHHHHHHHHHHhcCc-----CCCCeEEE-
Q 013204 31 NGKKYLDSLAGLWCTALGG--SEPRLVAAATA-QLNTLP-FYHSFWNRTTKPSLDLAKELLEMFTA-----SKMAKVFF- 100 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~--~~p~v~~a~~~-~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~~v~~- 100 (447)
+|+.++||..+.....-|+ .+|.+.+++.+ .+.... ..+ .+.....++.+.+++++.. ..++++++
T Consensus 27 ~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y----~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~ 102 (412)
T 1yaa_A 27 QRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEY----LGITGLPSLTSNAAKIIFGTQSDALQEDRVISV 102 (412)
T ss_dssp CCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCC----CCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEE
T ss_pred CCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCC----CCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEE
Confidence 4677899988854333332 56899999998 775321 111 1223345666666666521 13578999
Q ss_pred -eCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCC-C-CcccCCC
Q 013204 101 -TNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDC-P-HYWRYAH 177 (447)
Q Consensus 101 -~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~ 177 (447)
++||++|++.+++++... .++++|++.+++|+++.......+.... .++. . +.+.
T Consensus 103 ~t~g~~~a~~~~~~~~~~~------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~-------------~v~~~~~~~~~--- 160 (412)
T 1yaa_A 103 QSLSGTGALHISAKFFSKF------FPDKLVYLSKPTWANHMAIFENQGLKTA-------------TYPYWANETKS--- 160 (412)
T ss_dssp EEEHHHHHHHHHHHHHHHH------CTTCCEEEEESCCTTHHHHHHTTTCCEE-------------EEECEETTTTE---
T ss_pred eccchHhHHHHHHHHHHHh------CCCCEEEEeCCCCccHHHHHHHcCceEE-------------EEeeecCCCCc---
Confidence 999999999997765433 2347899999999998655444322111 1111 0 0000
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccc---
Q 013204 178 PGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLG--- 254 (447)
Q Consensus 178 ~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g--- 254 (447)
.+++++++.+....+ ...++++...++.+| ...+.+.+++|.++|++||+++|+||+|.+++..+
T Consensus 161 ----------~d~~~l~~~l~~~~~-~~~~~~~~~p~nPtG-~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~ 228 (412)
T 1yaa_A 161 ----------LDLNGFLNAIQKAPE-GSIFVLHSCAHNPTG-LDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDK 228 (412)
T ss_dssp ----------ECHHHHHHHHHHSCT-TCEEEEECSSCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHH
T ss_pred ----------cCHHHHHHHHHhCCC-CCEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccc
Confidence 014778887764322 244555344444445 45678899999999999999999999999886543
Q ss_pred ccccc-ccCCCCC---C---eeeecccCCCcccceeEEE--e-----Chh----HHHHhhhccCCCCccCcCCCCCCcHH
Q 013204 255 TMFGC-DKYSIKP---D---LVSFAKALSSAYMPIGAIL--V-----SPE----VSEVIHSQSNTLGSFSHGFTYSGHPV 316 (447)
Q Consensus 255 ~~~~~-~~~~~~~---d---~v~~sK~l~gg~~~~g~~~--~-----~~~----~~~~~~~~~~~~~~~~~~~t~~~~~~ 316 (447)
..... ......+ + +.++||.++..++|+|+++ + +++ +++.+... ....+.+++++
T Consensus 229 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~~~~~~~~ 301 (412)
T 1yaa_A 229 DAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKI-------IRSEVSNPPAY 301 (412)
T ss_dssp HTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHH-------HHTTTSSCCHH
T ss_pred hhHHHHHHHhcCCCCcceEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHH-------HhhccCCCChH
Confidence 22122 1111223 2 2368999987338999998 7 565 66666521 11223345788
Q ss_pred HHHHHHHHHHHHh--------hhcHHHHHHHHHHHHHHhHhhcc---CCCceeeEeeeee-EEEEEeecCCCCCCCCCCC
Q 013204 317 SCAVAIEALKIYK--------ERNIVEQVNKIAPKFQDGVKAFS---DSPIIGEIRGTGL-ILGTEFADNKSPNEPFPPE 384 (447)
Q Consensus 317 ~~~aa~a~l~~~~--------~~~~~~~~~~~~~~l~~~L~~l~---~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~~ 384 (447)
++.++.++|+... -++..++++++.+++.+.|+++. ...+. .+.+. +..+.+.
T Consensus 302 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~---~~~~~~~~~~~~~------------ 366 (412)
T 1yaa_A 302 GAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHI---VNQCGMFSFTGLT------------ 366 (412)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHH---HHCCSSEEECCCC------------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeee---ccCceEEEeeCCC------------
Confidence 8888888886431 23456677778888888887762 12221 22232 3222111
Q ss_pred cchHHHHHHHHHHcCceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 385 WGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 385 ~~~~~~~~~~l~~~Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
...+.+.+.++||++.+ .+|++++. .+++++++++++|+++++.
T Consensus 367 ---~~~~~~~l~~~gi~v~~---~~Ris~~~-~~~~~i~~~~~~l~~~~~~ 410 (412)
T 1yaa_A 367 ---PQMVKRLEETHAVYLVA---SGRASIAG-LNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp ---HHHHHHHHHHHCEECCT---TSEEEGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHhCCEEecc---CcEEEEcc-CCHhHHHHHHHHHHHHHHh
Confidence 22354455578999876 47999763 5999999999999998764
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.3e-23 Score=204.41 Aligned_cols=347 Identities=10% Similarity=0.023 Sum_probs=211.8
Q ss_pred EEecCCcccccc-CCCCCHHHHHHHHHHHh--cCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHH--H
Q 013204 35 YLDSLAGLWCTA-LGGSEPRLVAAATAQLN--TLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEAN--D 109 (447)
Q Consensus 35 ~lD~~~~~~~~~-lG~~~p~v~~a~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~--~ 109 (447)
.+||..+..... ++ .+|.+.+++.+.+. ....... ........++.+.+++++ ..++++|++++|+++++ .
T Consensus 34 ~i~l~~g~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~--Y~~~~G~~~lr~~ia~~~-~~~~~~i~~t~G~~~al~l~ 109 (422)
T 3d6k_A 34 SLDLTRGKPSAEQLD-LSNDLLSLPGGDFRTKDGVDCRN--YGGLLGIADIRELWAEAL-GLPADLVVAQDGSSLNIMFD 109 (422)
T ss_dssp CEECCCCSCCHHHHH-TTGGGGGCSTTCCBCTTCCBTTS--SCCSSCCHHHHHHHHHHH-TCCGGGEEECSSCHHHHHHH
T ss_pred eEeCCCCCCChhhCC-CcHHHHHHHHHHHhhccchhhhC--CCCCCCCHHHHHHHHHHh-CCChhHEEEecchHHHHHHH
Confidence 688876642100 22 34567776655421 1100000 112223567888888887 35678999999999997 5
Q ss_pred HHHHHHHHHHHhcCCC-----CcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhH
Q 013204 110 TQVKLVWYYNNALGRP-----NKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEE 184 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~-----~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (447)
.+++.+... ...|+. .+++|++.+|+|+++.......+.... .++.... +
T Consensus 110 ~~~~~l~~~-~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~-------------~v~~~~~------g----- 164 (422)
T 3d6k_A 110 LISWSYTWG-NNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMI-------------NVPMTDE------G----- 164 (422)
T ss_dssp HHHHHHHHC-CTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEE-------------EEEEETT------E-----
T ss_pred HHHHHhcCc-ccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEE-------------ecCCCCC------C-----
Confidence 555654310 000100 124699999999998755544332211 1111000 0
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEEcc-ccCCCCCccCChhHHHHHHHHHH-hcCCEEEEehhhcC--CCcccccc-cc
Q 013204 185 YSTRLANNLEDLILKEGPETIAAFIAEP-VIGAGGVIPPPATYFEKVQAVVK-KYDILFIADEVICA--FGRLGTMF-GC 259 (447)
Q Consensus 185 ~~~~~~~~le~~l~~~~~~~~a~vi~ep-v~~~~G~~~~~~~~l~~l~~l~~-~~g~~li~DEv~~g--~g~~g~~~-~~ 259 (447)
.+++++++.+. +.++++|++.| .++.+|. .++.+++++|.++|+ +||+++|+||+|.. |+..+..+ ..
T Consensus 165 ---~d~~~l~~~l~---~~~~~~v~~~~~~~NPtG~-~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~ 237 (422)
T 3d6k_A 165 ---PDMGVVRELVK---DPQVKGMWTVPVFGNPTGV-TFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNV 237 (422)
T ss_dssp ---ECHHHHHHHHT---STTEEEEEECCSSCTTTCC-CCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCH
T ss_pred ---CCHHHHHHHHh---cCCCeEEEEcCCCCCCCCC-CCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcCh
Confidence 11477777774 23567777444 4555664 568899999999999 99999999999974 64443221 11
Q ss_pred -------ccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh---
Q 013204 260 -------DKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--- 329 (447)
Q Consensus 260 -------~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--- 329 (447)
...+....+.+|||....| +|+|++++++++++.+... ....+++.+++++.++.++|+...
T Consensus 238 ~~~~~~~~~~~~~i~~~S~SK~~~~G-lriG~~~~~~~l~~~l~~~-------~~~~~~~~~~~~q~a~~~~l~~~~~~~ 309 (422)
T 3d6k_A 238 IEFAQAAGNPNRFWFMSSTSKITHAG-SGVSFFASSKENIEWYASH-------ANVRGIGPNKLNQLAHAQFFGDVAGLK 309 (422)
T ss_dssp HHHHHHTTCTTCEEEEEESTTTSCTT-SSCEEEECCHHHHHHHHHH-------HHHHCSCCCHHHHHHHHHHHCSHHHHH
T ss_pred hhHhhccCCCCcEEEEcChhhhcCcc-cceEEEEeCHHHHHHHHHH-------HHhhcCCCCHHHHHHHHHHHhCcchHH
Confidence 1222334455789984444 8999999999998887632 222356678888888888775311
Q ss_pred --hhcHHHHHHHHHHHHHHhHhhc-cCCCceeeEe-eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee
Q 013204 330 --ERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIR-GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS 405 (447)
Q Consensus 330 --~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~ 405 (447)
-++..+.++++.+.+++.|++. ...+.+..+. ..|.++.+.+.... ...+.+.|.++||++.++
T Consensus 310 ~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~------------~~~~~~~l~~~gV~v~~~ 377 (422)
T 3d6k_A 310 AHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPGT------------ASRVVELAKEAGIALTGA 377 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEESTTC------------HHHHHHHHHHTTEECCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECCCCC------------HHHHHHHHHHCCeEEEcC
Confidence 1223445555666666666543 3323222222 34666777775321 345778889999999872
Q ss_pred -----------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 406 -----------GDNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 406 -----------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
.+.+|++++. ++++++++++++|+++++++..
T Consensus 378 g~~f~~~~~~~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~~~ 420 (422)
T 3d6k_A 378 GSSFPLHNDPNNENIRLAPSL-PPVAELEVAMDGFATCVLMAAL 420 (422)
T ss_dssp TTTSGGGCCTTSCEEEECCSS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCeEEEecCC-CCHHHHHHHHHHHHHHHHHHHh
Confidence 1469999776 8999999999999999877643
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.5e-22 Score=199.10 Aligned_cols=352 Identities=16% Similarity=0.104 Sum_probs=209.5
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDT 110 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~ 110 (447)
.|+.|+||.++.+..+ -.+++.+++. ..... ..+.+...++++++++++ +.+++++++||++|++.
T Consensus 40 ~~~~ylD~~~~~~~~~---~~~~~~~a~~----~~~~~----y~~~~~~~~l~~~la~~~---~~~~~~~~~~gt~a~~~ 105 (456)
T 2ez2_A 40 SKDIYIDLLTDSGTNA---MSDKQWAGMM----MGDEA----YAGSENFYHLERTVQELF---GFKHIVPTHQGRGAENL 105 (456)
T ss_dssp GGGCSEECSCSSSCCC---CCHHHHHHHT----TCCCC----SSSCHHHHHHHHHHHHHH---CCSEEEEESSHHHHHHH
T ss_pred cccceeeeccccCCcc---CCHHHHHHhh----cchhh----cccChhHHHHHHHHHHHh---CCCcEEEeCCcHHHHHH
Confidence 5678999987754432 2466666654 21111 124567789999999987 44589999999999999
Q ss_pred HHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHH
Q 013204 111 QVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190 (447)
Q Consensus 111 Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (447)
+++.+. +++ + |+..++||+.+...+...|.....-............++ .+ . .++
T Consensus 106 al~~l~-------~~g-d--i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~----~~---~--------~d~ 160 (456)
T 2ez2_A 106 LSQLAI-------KPG-Q--YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAF----KG---D--------IDL 160 (456)
T ss_dssp HHHHHC-------CTT-C--EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSC----TT---C--------BCH
T ss_pred HHHHhC-------CCC-C--EeccccccchhHHHHHHcCCEEEEecccccccccccccc----cC---C--------CCH
Confidence 998763 133 3 778899988865555544432211111000000000000 00 0 014
Q ss_pred HHHHHHHHhhCCCcEEEEEEc-cccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcC----------CCccccccc-
Q 013204 191 NNLEDLILKEGPETIAAFIAE-PVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA----------FGRLGTMFG- 258 (447)
Q Consensus 191 ~~le~~l~~~~~~~~a~vi~e-pv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g----------~g~~g~~~~- 258 (447)
++|++.+....+..+++|+++ |.|+.+| .+.+.+++++|+++|++||+++|+||+|+. +.+.|....
T Consensus 161 ~~l~~~i~~~t~~~~~~v~l~~p~n~ptG-~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~ 239 (456)
T 2ez2_A 161 KKLQKLIDEKGAENIAYICLAVTVNLAGG-QPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAE 239 (456)
T ss_dssp HHHHHHHHHHCGGGEEEEEEESSBTTTTS-BCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHH
T ss_pred HHHHHHHHhccccceeEEEEeccCCCCCC-ccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhh
Confidence 778888865332346777777 5554677 567889999999999999999999999984 334443211
Q ss_pred -cccCCCCCCeeeec-ccCCCcccceeEEEe-ChhHHHHhhhccCCCCccCcCCCC-CCcHHHHHH-HHHHHHHHhhhcH
Q 013204 259 -CDKYSIKPDLVSFA-KALSSAYMPIGAILV-SPEVSEVIHSQSNTLGSFSHGFTY-SGHPVSCAV-AIEALKIYKERNI 333 (447)
Q Consensus 259 -~~~~~~~~d~v~~s-K~l~gg~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~t~-~~~~~~~~a-a~a~l~~~~~~~~ 333 (447)
.+..+..+|++++| |.+++.+ .+|++++ ++++++.+...... .....++ +.++..+.+ +.+.++.+. +++
T Consensus 240 ~~~~~~~~~d~~~~S~kk~~~~~-~gG~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~a~~~~~~~~-~~~ 314 (456)
T 2ez2_A 240 IVHEMFSYADGCTMSGKKDCLVN-IGGFLCMNDDEMFSSAKELVVV---YEGMPSYGGLAGRDMEAMAIGLREAMQ-YEY 314 (456)
T ss_dssp HHHHHHTTCSEEEEETTTTTCCS-SCEEEEESCHHHHHHHHHHHHH---HTCCTTTTTCCHHHHHHHHHHHHHHTC-HHH
T ss_pred hhhhhcccCCEEEEeCcccCCCC-ceeEEEECCHHHHHHHHHHHhh---ccCcccccCcchhHHHHHHHHHHHHhH-HHH
Confidence 00122347888774 6665532 4788888 67887766431100 0001111 223333333 444444332 356
Q ss_pred HHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeec--CCCCCCCCCCCcch-HHHHHHHH-HHcCceEEee----
Q 013204 334 VEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFAD--NKSPNEPFPPEWGI-GAYFGAQC-EKHGMLVRVS---- 405 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~--~~~~~~~~~~~~~~-~~~~~~~l-~~~Gi~~~~~---- 405 (447)
.++.+++.+++++.|+++ +.+++. ...|.++.+.+.. +.... ..+ ...+.+.| .++||.+.+.
T Consensus 315 ~~~~~~~~~~l~~~L~~~-g~~~~~--p~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~L~~~~gv~~~~~g~~~ 385 (456)
T 2ez2_A 315 IEHRVKQVRYLGDKLKAA-GVPIVE--PVGGHAVFLDARRFCEHLTQ------DEFPAQSLAASIYVETGVRSMERGIIS 385 (456)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCCBCS--SCCSSEEEEEHHHHTTTSCG------GGCHHHHHHHHHHHHHSEECEEESHHH
T ss_pred HHHHHHHHHHHHHHHhcC-CCcccc--CCCceEEEEEhHHhcCCCCh------hhccHHHHHHHHHHhcCeeeecccccc
Confidence 677777788888888774 333322 2235555666532 11010 112 33456666 5889875432
Q ss_pred --------------CCEEEEecCCC-CCHHHHHHHHHHHHHHHHHH
Q 013204 406 --------------GDNIMMSPPFI-MSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 406 --------------g~~iR~~~~~~-~t~e~i~~~~~~l~~~l~~~ 436 (447)
.+.+|++++.. +++++|++++++|++++++.
T Consensus 386 ~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~ 431 (456)
T 2ez2_A 386 AGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHK 431 (456)
T ss_dssp HCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTG
T ss_pred cccCccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhh
Confidence 15799999887 89999999999999998763
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=195.54 Aligned_cols=327 Identities=15% Similarity=0.125 Sum_probs=198.3
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQ 111 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~A 111 (447)
...++||.++. .++.+|++++++.+++.. +....+..+...++++++++.+. ...+++|++||++|++.+
T Consensus 6 ~~~~id~~~~~----~~~~~~~v~~a~~~~~~~----~~~~~~~~~~~~~l~~~la~~~g--~~~~v~~~~~gt~a~~~a 75 (356)
T 1v72_A 6 RPPALGFSSDN----IAGASPEVAQALVKHSSG----QAGPYGTDELTAQVKRKFCEIFE--RDVEVFLVPTGTAANALC 75 (356)
T ss_dssp CCCCCBCSCGG----GCCCCHHHHHHHHHTTSS----CCCSTTCSHHHHHHHHHHHHHHT--SCCEEEEESCHHHHHHHH
T ss_pred CCceEeeccCC----ccCCCHHHHHHHHhhccC----cccccccchHHHHHHHHHHHHhC--CCCcEEEeCCccHHHHHH
Confidence 35689998763 256899999999987632 11112346677899999999974 334589999999999999
Q ss_pred HHHHHHHHHhcCCCCcceEEEEcCCCccchhhh--hccc--CCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 112 VKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA--ASLS--GLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 112 l~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
++.++ ..++.|++..+ +|+..... +... |... ..++.++ +.
T Consensus 76 l~~~~--------~~gd~vi~~~~-~~~~~~~~~~~~~~~~g~~~------------~~v~~~~-~~------------- 120 (356)
T 1v72_A 76 LSAMT--------PPWGNIYCHPA-SHINNDECGAPEFFSNGAKL------------MTVDGPA-AK------------- 120 (356)
T ss_dssp HHTSC--------CTTEEEEECTT-SHHHHSSTTHHHHHTTSCEE------------EECCCGG-GC-------------
T ss_pred HHHhc--------CCCCEEEEcCc-cchhhhhchHHHHHhCCcEE------------EEecCCC-Ce-------------
Confidence 99763 23356666544 45543222 2211 2211 1111110 00
Q ss_pred HHHHHHHH-HHHhh---CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc--ccccccccc
Q 013204 188 RLANNLED-LILKE---GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR--LGTMFGCDK 261 (447)
Q Consensus 188 ~~~~~le~-~l~~~---~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~--~g~~~~~~~ 261 (447)
.++++|++ .+... ...++++|++++.++ +| .+++.+++++|.++|++||+++|+||+|..+.. .|.. ...
T Consensus 121 ~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG-~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~ 196 (356)
T 1v72_A 121 LDIVRLRERTREKVGDVHTTQPACVSITQATE-VG-SIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCS--PAE 196 (356)
T ss_dssp CCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TS-CCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC--TTT
T ss_pred EcHHHHHHHhhhcchhhccCCceEEEEEcCCC-CC-ccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCC--HHH
Confidence 11377777 66421 112578888888765 66 456889999999999999999999999874311 1211 111
Q ss_pred CC--CCCCeee--ecccCCCccccee--EEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh---c
Q 013204 262 YS--IKPDLVS--FAKALSSAYMPIG--AILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER---N 332 (447)
Q Consensus 262 ~~--~~~d~v~--~sK~l~gg~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~---~ 332 (447)
.+ ...|+++ ++|. | .|+| ++++++++++.+..... ..+........ ++.++++.++++ +
T Consensus 197 ~~~~~~~d~~~~s~sK~--g--~~~G~g~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~~l~~~~~~~ 264 (356)
T 1v72_A 197 MTWKAGVDALSFGATKN--G--VLAAEAIVLFNTSLATEMSYRRK-----RAGHLSSKMRF---LSAQIDAYLTDDLWLR 264 (356)
T ss_dssp TTGGGTCCEEEECCGGG--T--CSSCEEEEESSGGGHHHHHHHHH-----HTTCCCSSTHH---HHHHHHHHTSTTHHHH
T ss_pred hhhhhcCCEEEEecccC--C--CcCccEEEEECHHHHhhHHHHhh-----ccCchhhhHHH---HHHHHHHHHHhhhHHH
Confidence 11 1356654 5687 2 3555 77788888877643110 01111121222 223334444332 2
Q ss_pred HHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee---CCEE
Q 013204 333 IVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS---GDNI 409 (447)
Q Consensus 333 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---g~~i 409 (447)
..++.+++.+++++.|+++.+..+. .+..+.++.+.+.. .+.+.|.++||.+.++ .+.+
T Consensus 265 ~~~~~~~~~~~l~~~L~~~~g~~~~--~~~~~~~~~~~~~~----------------~~~~~l~~~gi~v~~g~~~~~~i 326 (356)
T 1v72_A 265 NARKANAAAQRLAQGLEGLGGVEVL--GGTEANILFCRLDS----------------AMIDALLKAGFGFYHDRWGPNVV 326 (356)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTEEEE--SCCCSSEEEEEECH----------------HHHHHHHHTTCBCBCSSSSTTEE
T ss_pred HHHHHHHHHHHHHHHHhhCCCcEEc--cCCCccEEEEEcCH----------------HHHHHHHhcCeEEeccccCCCeE
Confidence 4556677777787777664221111 12234444554431 3778889999998854 3679
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 410 MMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 410 R~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
|+++++.++++++++++++|++++++.+
T Consensus 327 Ri~~~~~~~~~~i~~~~~~l~~~l~~~~ 354 (356)
T 1v72_A 327 RFVTSFATTAEDVDHLLNQVRLAADRTQ 354 (356)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHTC----
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999886643
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-22 Score=197.84 Aligned_cols=327 Identities=13% Similarity=0.067 Sum_probs=210.0
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHH
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQV 112 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al 112 (447)
+.|+||.++... ++ |++++++.+++....+ .+.+...++++.+++++ +.+++++++||++|++.++
T Consensus 30 ~~~id~~~~~~~--~~---~~v~~a~~~~~~~~~y------~~~~~~~~l~~~la~~~---~~~~~v~~~~Gt~a~~~~l 95 (399)
T 2oga_A 30 VPFLDLKAAYEE--LR---AETDAAIARVLDSGRY------LLGPELEGFEAEFAAYC---ETDHAVGVNSGMDALQLAL 95 (399)
T ss_dssp BCSCCHHHHHHH--TH---HHHHHHHHHHHHHTCC------SSSHHHHHHHHHHHHHT---TSSEEEEESCHHHHHHHHH
T ss_pred CcccccCcCCCC--CC---HHHHHHHHHHHhcCCC------CCchhHHHHHHHHHHHH---CCCeEEEecCHHHHHHHHH
Confidence 578999877543 32 8999999998875321 13466788999999987 3347899999999999999
Q ss_pred HHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC-cccCCCCCCChhHHHHHHHH
Q 013204 113 KLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH-YWRYAHPGETEEEYSTRLAN 191 (447)
Q Consensus 113 ~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 191 (447)
+.+. . .++++|++.+++|++....... .|... ..++... .+. .+++
T Consensus 96 ~~~~------~-~~gd~vl~~~~~~~~~~~~~~~-~g~~~------------~~~~~~~~~~~-------------~d~~ 142 (399)
T 2oga_A 96 RGLG------I-GPGDEVIVPSHTYIASWLAVSA-TGATP------------VPVEPHEDHPT-------------LDPL 142 (399)
T ss_dssp HHTT------C-CTTCEEEEESSSCTHHHHHHHH-TTCEE------------EEECBCSSSSS-------------BCHH
T ss_pred HHhC------C-CCcCEEEECCCccHHHHHHHHH-CCCEE------------EEEecCCCCCC-------------cCHH
Confidence 8762 1 3347899999999986544332 23221 1111110 000 0136
Q ss_pred HHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeee
Q 013204 192 NLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF 271 (447)
Q Consensus 192 ~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~ 271 (447)
++++.+. +++++|++++ .+|.+.+ +++|.++|++||+++|+||+|+ +|..... ..++..+|++++
T Consensus 143 ~l~~~i~----~~~~~v~~~n---~tG~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~~~---~~~~~~~di~~~ 207 (399)
T 2oga_A 143 LVEKAIT----PRTRALLPVH---LYGHPAD----MDALRELADRHGLHIVEDAAQA-HGARYRG---RRIGAGSSVAAF 207 (399)
T ss_dssp HHHHHCC----TTEEEECCBC---GGGCCCC----HHHHHHHHHHHTCEECEECTTC-TTCEETT---EETTCTTCEEEE
T ss_pred HHHHhcC----CCCeEEEEeC---CcCCccC----HHHHHHHHHHcCCEEEEECccc-ccCccCC---eecccccCEEEE
Confidence 6776664 2566776433 3455554 9999999999999999999997 3321111 112333688877
Q ss_pred c----ccCCCcccceeEEEeC-hhHHHHhhhccCCC--CccC---cCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 013204 272 A----KALSSAYMPIGAILVS-PEVSEVIHSQSNTL--GSFS---HGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIA 341 (447)
Q Consensus 272 s----K~l~gg~~~~g~~~~~-~~~~~~~~~~~~~~--~~~~---~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~ 341 (447)
| |.+++.+ ++|+++.+ +++++.+....... ..+. .+.++..++++++++.++++.++ ++.++.+++.
T Consensus 208 S~~~sK~~~~~G-~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~ 284 (399)
T 2oga_A 208 SFYPGKNLGCFG-DGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLD--SWNGRRSALA 284 (399)
T ss_dssp ECCTTSSSCCSS-CCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHH
T ss_pred eCCCCccCCcCC-ceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 4 9998733 78888886 78877665321100 0011 12234567888888888887553 3456677777
Q ss_pred HHHHHhHhhccCCCceee-EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC--------------
Q 013204 342 PKFQDGVKAFSDSPIIGE-IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-------------- 406 (447)
Q Consensus 342 ~~l~~~L~~l~~~~~~~~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-------------- 406 (447)
+++++.|+++++..+... ..+.+.++.+.+... ....+.+.|.++||.+.+..
T Consensus 285 ~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~ 352 (399)
T 2oga_A 285 AEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRTE------------RRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEA 352 (399)
T ss_dssp HHHHHHTTTCTTCBCCCCCTTEECCCSSEEEECS------------SHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTS
T ss_pred HHHHHHhccCCCccccCCCCCCcceeEEEEEECC------------CHHHHHHHHHHCCCceecCCCCccccchhhcccC
Confidence 888888876533222110 011222112222211 14568889999999987532
Q ss_pred --------------CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 407 --------------DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 407 --------------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+.+|++++..+|++|+++++++|+++++++
T Consensus 353 ~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l 396 (399)
T 2oga_A 353 PPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERV 396 (399)
T ss_dssp CCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 359999999999999999999999988654
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-22 Score=193.12 Aligned_cols=312 Identities=15% Similarity=0.138 Sum_probs=198.8
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc--CCCCeEEEeCChhhHHHH
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA--SKMAKVFFTNSGSEANDT 110 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~v~~~~sGseA~~~ 110 (447)
++++||.++. ++++ .+|++.+++.+++.+... + ..+.....++.+.+++++.. .+.+++++++||++|++.
T Consensus 19 ~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~-~---~y~~~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~ 91 (335)
T 1uu1_A 19 RDKTYLALNE--NPFP-FPEDLVDEVFRRLNSDAL-R---IYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYV 91 (335)
T ss_dssp CCSEEESSCC--CSSC-CCHHHHHHHHHTCCGGGG-G---SCCCSSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHH
T ss_pred CcceECCCCC--CCCC-CCHHHHHHHHHHhhhhhh-h---cCCCCchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHH
Confidence 4688987775 3455 689999999988732111 1 11222356788888888741 356799999999999999
Q ss_pred HHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHH
Q 013204 111 QVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190 (447)
Q Consensus 111 Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (447)
+++.+ +++|++. ++||++....... |.... .++..+.+.. + +
T Consensus 92 ~~~~~-----------gd~Vl~~-p~y~~~~~~~~~~-g~~~~------------~v~~~~~~~~-----d--------~ 133 (335)
T 1uu1_A 92 MMLMF-----------DRSVFFP-PTYSCYRIFAKAV-GAKFL------------EVPLTKDLRI-----P--------E 133 (335)
T ss_dssp HHHHS-----------SEEEECS-SSCHHHHHHHHHH-TCEEE------------ECCCCTTSCC-----C--------C
T ss_pred HHHHh-----------CCcEEEC-CCcHHHHHHHHHc-CCeEE------------EeccCCCCCC-----C--------H
Confidence 99865 2678888 9999986544332 22111 1111110000 0 0
Q ss_pred HHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccc-cccCCCCCCee
Q 013204 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFG-CDKYSIKPDLV 269 (447)
Q Consensus 191 ~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~-~~~~~~~~d~v 269 (447)
+++ ++...+++++| ++.+|.+. +.+.+++|+++| | ++|+||+|++++. +.... ....+....+.
T Consensus 134 ~~l--------~~~~~v~l~~p-~nptG~~~-~~~~l~~l~~~~---~-~li~De~~~~~~~-~~~~~~~~~~~~~i~~~ 198 (335)
T 1uu1_A 134 VNV--------GEGDVVFIPNP-NNPTGHVF-EREEIERILKTG---A-FVALDEAYYEFHG-ESYVDFLKKYENLAVIR 198 (335)
T ss_dssp CCC--------CTTEEEEEESS-CTTTCCCC-CHHHHHHHHHTT---C-EEEEECTTHHHHC-CCCGGGGGTCSSEEEEE
T ss_pred HHc--------CCCCEEEEeCC-CCCCCCCC-CHHHHHHHHHhC---C-EEEEECcchhhcc-hhHHHHhhhCCCEEEEe
Confidence 222 12333444667 45555554 555555555544 8 8999999997642 11111 11122223344
Q ss_pred eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHhH
Q 013204 270 SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVEQVNKIAPKFQDGV 348 (447)
Q Consensus 270 ~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~~~~~~~~~l~~~L 348 (447)
++||.++.+++++|++++++++++.+... ..+++.+++++.++.++|+..+ -++..++++++.+++.+.|
T Consensus 199 s~sK~~g~~G~r~G~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L 269 (335)
T 1uu1_A 199 TFSKAFSLAAQRVGYVVASEKFIDAYNRV---------RLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSAL 269 (335)
T ss_dssp ESTTTTTCGGGCCEEEEECHHHHHHHHHH---------SCTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhcCCcccCeEEEEeCHHHHHHHHHh---------cCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999973338999999999998888642 1246788899998888887532 2345677777888888888
Q ss_pred hhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeCCEEEEecCCCCCHHHHHHHHHH
Q 013204 349 KAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISK 428 (447)
Q Consensus 349 ~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~ 428 (447)
+++ +..+ .+..|.++.+.+.. . ....+.+.|+++||.+.+..+.+|+++ .+++++++++++
T Consensus 270 ~~~-g~~~---~~~~~~~~~~~~~~-~-----------~~~~~~~~l~~~gi~v~~~~~~iRis~---~~~~~i~~~~~~ 330 (335)
T 1uu1_A 270 REM-GYRI---TDSRGNFVFVFMEK-E-----------EKERLLEHLRTKNVAVRSFREGVRITI---GKREENDMILRE 330 (335)
T ss_dssp HHH-TCCB---CCCCSSEEEEECCT-H-----------HHHHHHHHHHHHTEEEEEETTEEEEEC---CCHHHHHHHHHH
T ss_pred HHC-CcEE---cCCCCeEEEEECCC-C-----------CHHHHHHHHHHCCEEEEECCCeEEEEe---CCHHHHHHHHHH
Confidence 776 3222 23446666666542 0 144588889999999999778899995 357889999999
Q ss_pred HHHH
Q 013204 429 YGKA 432 (447)
Q Consensus 429 l~~~ 432 (447)
|+++
T Consensus 331 l~~~ 334 (335)
T 1uu1_A 331 LEVF 334 (335)
T ss_dssp HHCC
T ss_pred HHhh
Confidence 8753
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-21 Score=189.97 Aligned_cols=338 Identities=15% Similarity=0.134 Sum_probs=212.2
Q ss_pred EEEecCCccccccCCCCCHHHHHHHHHHHhcCCcc-cc-c--CcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHH
Q 013204 34 KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY-HS-F--WNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEAND 109 (447)
Q Consensus 34 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~-~--~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~ 109 (447)
.|+|+.++ |+.+|++++++.+.+.+.... ++ . .....+...++++++++++. .+.+++++++||++|++
T Consensus 2 ~yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g-~~~~~v~~~~g~t~a~~ 74 (382)
T 4eb5_A 2 AYFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVN-GGGGTVVFTSGATEANN 74 (382)
T ss_dssp CBCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHT-CTTEEEEEESSHHHHHH
T ss_pred eeeccCCC------CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEcCchHHHHH
Confidence 37887655 468999999999998753211 10 0 00113456788889998874 34569999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcc--cCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASL--SGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
.+++.+...... +++.|++.++.|++........ .|.. +..++....+.
T Consensus 75 ~~~~~l~~~~~~----~gd~Vl~~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~------------- 125 (382)
T 4eb5_A 75 LAIIGYAMRNAR----KGKHILVSAVEHMSVINPAKFLQKQGFE------------VEYIPVGKYGE------------- 125 (382)
T ss_dssp HHHHHHHHHHGG----GCCEEEEETTCCHHHHHHHHHHTTTTCE------------EEEECBCTTSC-------------
T ss_pred HHHHHHHhhccC----CCCEEEECCCcchHHHHHHHHHHhCCcE------------EEEeccCCCCc-------------
Confidence 999977522111 2368999999998774433221 1211 11222211100
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCC
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPD 267 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d 267 (447)
.++++|++.+. +++++|+++++++.+|.+.+ +++|.++|++||++ |+||+|+ +|... ..... ..+|
T Consensus 126 ~d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~-i~D~a~~-~g~~~--~~~~~--~~~d 191 (382)
T 4eb5_A 126 VDVSFIDQKLR----DDTILVSVQHANNEIGTIQP----VEEISEVLAGKAAL-HIDATAS-VGQIE--VDVEK--IGAD 191 (382)
T ss_dssp BCHHHHHHHCC----TTEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSEE-EEECTTT-BTTBC--CCHHH--HTCS
T ss_pred cCHHHHHHHhc----CCCeEEEEeccCCCccccCC----HHHHHHHHHHCCCE-EEEcchh-cCCcc--cCccc--cCCC
Confidence 01367777664 25778888988888888776 89999999999999 9999997 54321 11111 2467
Q ss_pred eee--ecccCCCcccceeEEEeChhH-HHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh--hcHHHHHHHHHH
Q 013204 268 LVS--FAKALSSAYMPIGAILVSPEV-SEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE--RNIVEQVNKIAP 342 (447)
Q Consensus 268 ~v~--~sK~l~gg~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~--~~~~~~~~~~~~ 342 (447)
+++ ++|.++ . .++|+++++++. +...... .+........+.++..+.++.++++.+.+ ++..++++++.+
T Consensus 192 i~~~s~sK~~g-~-~g~G~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~ 266 (382)
T 4eb5_A 192 MLTISSNDIYG-P-KGVGALWIRKEAKLQPVILG---GGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRD 266 (382)
T ss_dssp EEEEETGGGTC-C-SSCEEEEEETTCCCCCSSCS---SCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeehHHhcC-C-CceEEEEEccccccCceecC---CCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 775 469643 2 357888887763 1111000 00000112334566677777777776543 345567777777
Q ss_pred HHHHhHhhccCCCceeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee----------------
Q 013204 343 KFQDGVKAFSDSPIIGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS---------------- 405 (447)
Q Consensus 343 ~l~~~L~~l~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---------------- 405 (447)
++.+.|++++...+.... ...+.++.+.+... ....+.+.|.++||.+.++
T Consensus 267 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~ 334 (382)
T 4eb5_A 267 RIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYI------------EGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMA 334 (382)
T ss_dssp HHHHHHTTSTTEEECSCSSSBCTTEEEEEETTS------------CHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHH
T ss_pred HHHHHHhhCCCeEEeCCcccCCCCEEEEEeCCc------------CHHHHHHHHHHCCEEEeccccccCCCCcccHHHHH
Confidence 777777765221111100 01244555655421 1456888888999998864
Q ss_pred --------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 406 --------GDNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 406 --------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
.+.+|++++..++++++++++++|+++++++++
T Consensus 335 ~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (382)
T 4eb5_A 335 CGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp TTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 257999988888999999999999999988765
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-21 Score=197.71 Aligned_cols=336 Identities=15% Similarity=0.109 Sum_probs=201.6
Q ss_pred CCHHHHHHHHHHHhcCCc----ccccCcCCChHHHHHHHHHHHhcCcC-CCCeE--EEeCChhhHHHHHHHHHHHHHHh-
Q 013204 50 SEPRLVAAATAQLNTLPF----YHSFWNRTTKPSLDLAKELLEMFTAS-KMAKV--FFTNSGSEANDTQVKLVWYYNNA- 121 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~v--~~~~sGseA~~~Al~~~~~~~~~- 121 (447)
.++.+.+++.+++..... .+...........++++++++++... ..+++ ++++||++|++.++++++.....
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~ 187 (514)
T 3mad_A 108 GDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARAT 187 (514)
T ss_dssp CCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhh
Confidence 567777777776643211 11110111223345666777776321 11466 99999999999999988765322
Q ss_pred cCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhC
Q 013204 122 LGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEG 201 (447)
Q Consensus 122 ~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~ 201 (447)
+| ..+++|++..++|++........ |.. +..+++...++ .++++|++.+.
T Consensus 188 ~g-~~~d~Vi~~~~~~~~~~~~~~~~-G~~------------v~~v~~~~~~~-------------~d~~~Le~~i~--- 237 (514)
T 3mad_A 188 KG-ITAPEAVVPVSAHAAFDKAAQYF-GIK------------LVRTPLDADYR-------------ADVAAMREAIT--- 237 (514)
T ss_dssp HC-CSSCEEEEETTSCTHHHHHHHHH-TCE------------EEEECBCTTSC-------------BCHHHHHHHCC---
T ss_pred cC-CCCCeEEEeCccchHHHHHHHHc-CCe------------eEEeeeCCCCC-------------CCHHHHHHHhc---
Confidence 22 23478999888888765443332 221 11222211111 01477777764
Q ss_pred CCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCC-----cccc---ccccccCCCCCCeee--e
Q 013204 202 PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG-----RLGT---MFGCDKYSIKPDLVS--F 271 (447)
Q Consensus 202 ~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g-----~~g~---~~~~~~~~~~~d~v~--~ 271 (447)
+++++|++++.++.+|.+.+ +++|.++|++||++||+||+|+++. +.|. .+.....+ .|+++ +
T Consensus 238 -~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g--~d~~~~s~ 310 (514)
T 3mad_A 238 -PNTVVVAGSAPGYPHGVVDP----IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEG--VTSVSADT 310 (514)
T ss_dssp -TTEEEEEEETTCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTT--CCEEEECT
T ss_pred -cCCEEEEEeCCCCCCccccC----HHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCC--CcEEEECc
Confidence 35788888888888888766 9999999999999999999998763 2332 22333344 36665 4
Q ss_pred cccCCCcccceeEEEeChhHHHHhhhcc--CCCC-ccC-cCCCCCCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHH
Q 013204 272 AKALSSAYMPIGAILVSPEVSEVIHSQS--NTLG-SFS-HGFTYSGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKF 344 (447)
Q Consensus 272 sK~l~gg~~~~g~~~~~~~~~~~~~~~~--~~~~-~~~-~~~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l 344 (447)
+|.+.++ .++|+++.+++.+....... ...+ .+. .....+.+....++..++++.+.. ++..++..++.+++
T Consensus 311 ~K~l~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l 389 (514)
T 3mad_A 311 HKYGYGA-KGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRL 389 (514)
T ss_dssp TTTTCCC-SSCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCC-CCeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5887776 69999998877554321100 0000 000 000112222233334444444333 45677888888888
Q ss_pred HHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee--CCEEEEecC-CCCCHHH
Q 013204 345 QDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS--GDNIMMSPP-FIMSPEE 421 (447)
Q Consensus 345 ~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--g~~iR~~~~-~~~t~e~ 421 (447)
++.|+++.+..++.. ...++.+..... ....+.+.|+++||++... ++.+|+++. ...++++
T Consensus 390 ~~~L~~~~g~~~~~~---~~~~~~~~~~~~------------~~~~l~~~L~~~Gi~v~g~~~~~~~Ri~~~~~~~~~e~ 454 (514)
T 3mad_A 390 KAGVRAIPSLKILGD---PLWVIAVASDEL------------NIYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEPGV 454 (514)
T ss_dssp HHHHHTSTTCEESSC---CSSEEEEECSSS------------CHHHHHHHHHTTTCBCEEETTTTEEEEECCGGGGSTTH
T ss_pred HHHHhhCCCeEEeCC---CeEEEEEeCCCC------------CHHHHHHHHHhcCCEeccCCCCCeEEEEEecCCCCHHH
Confidence 888887633222211 122444433211 1456889999999988543 367999987 4557799
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013204 422 VDELISKYGKALKATEE 438 (447)
Q Consensus 422 i~~~~~~l~~~l~~~~~ 438 (447)
|++++++|+++++++++
T Consensus 455 i~~~l~~L~~~l~~~~~ 471 (514)
T 3mad_A 455 VDRFLADLQDAVAQVRA 471 (514)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999988764
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.9e-22 Score=195.38 Aligned_cols=331 Identities=15% Similarity=0.085 Sum_probs=211.4
Q ss_pred cCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEE-EeCChhhHHHHHHHHHHHHHHhcCC
Q 013204 46 ALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVF-FTNSGSEANDTQVKLVWYYNNALGR 124 (447)
Q Consensus 46 ~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~-~~~sGseA~~~Al~~~~~~~~~~~~ 124 (447)
.+++.++.+.+++.+++.+....+.. ....+...++++++++.+. .+.+.++ +++||++|++.+++.+.
T Consensus 14 ~~~p~p~~~~~~v~~a~~~~~~~~~~-~~~~~~~~~l~~~la~~~g-~~~~~~~~~~~s~t~al~~~~~~l~-------- 83 (416)
T 3isl_A 14 IMTPGPVEVDPRVLRVMSTPVVGQFD-PAFTGIMNETMEMLRELFQ-TKNRWAYPIDGTSRAGIEAVLASVI-------- 83 (416)
T ss_dssp ECSSSSCCCCHHHHHHTTSCCCCTTS-HHHHHHHHHHHHHHHHHTT-CCCSEEEEEESCHHHHHHHHHHHHC--------
T ss_pred eecCCCcCcCHHHHHHhcccCCCCcc-HHHHHHHHHHHHHHHHHhC-CCCCcEEEecCcHHHHHHHHHHHhc--------
Confidence 35555555566666666542211110 1123456788888988874 3445555 88999999999998763
Q ss_pred CCcceEEEEcCCCccchhh-hhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCC
Q 013204 125 PNKKKFIARQKSYHGSTLI-AASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPE 203 (447)
Q Consensus 125 ~~~~~vi~~~~~yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~ 203 (447)
.++++|++.+++||+.... .....|... ..++.+..+. .++++|++.+...
T Consensus 84 ~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~------------~~v~~~~~~~-------------~d~~~l~~~i~~~--- 135 (416)
T 3isl_A 84 EPEDDVLIPIYGRFGYLLTEIAERYGANV------------HMLECEWGTV-------------FDPEDIIREIKKV--- 135 (416)
T ss_dssp CTTCEEEEEESSHHHHHHHHHHHHTTCEE------------EEEECCTTCC-------------CCHHHHHHHHHHH---
T ss_pred CCCCEEEEecCCcccHHHHHHHHhcCCee------------EEEecCCCCC-------------CCHHHHHHHHhhC---
Confidence 3457899999999984322 222222211 1122211100 0147788887632
Q ss_pred cEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeee--cccCCCcccc
Q 013204 204 TIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF--AKALSSAYMP 281 (447)
Q Consensus 204 ~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~--sK~l~gg~~~ 281 (447)
++++|+++++++.+|.+.+ +++|.++|++||+++|+||+|+ +|.. ..... ...+|++++ +|.+.++ .+
T Consensus 136 ~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~--~~~~~--~~~~d~~~~s~~K~l~g~-~g 205 (416)
T 3isl_A 136 KPKIVAMVHGETSTGRIHP----LKAIGEACRTEDALFIVDAVAT-IGGC--EVKVD--EWKIDAAIGGTQKCLSVP-SG 205 (416)
T ss_dssp CCSEEEEESEETTTTEECC----CHHHHHHHHHTTCEEEEECTTT-TTTS--CCCTT--TTTCSEEECCSSSTTCCC-SS
T ss_pred CCcEEEEEccCCCCceecC----HHHHHHHHHHcCCEEEEECCcc-ccCC--Ccchh--hcCCCEEEecCccccCCC-CC
Confidence 3467888888888887776 8999999999999999999987 4322 11122 234677765 5888777 68
Q ss_pred eeEEEeChhHHHHhhhcc------------------CCCC-------------ccCcCCCCCCcHHHHHHHHHHHHHHhh
Q 013204 282 IGAILVSPEVSEVIHSQS------------------NTLG-------------SFSHGFTYSGHPVSCAVAIEALKIYKE 330 (447)
Q Consensus 282 ~g~~~~~~~~~~~~~~~~------------------~~~~-------------~~~~~~t~~~~~~~~~aa~a~l~~~~~ 330 (447)
+|++++++++++.+.... .... ........+.+..+++++.++++.+..
T Consensus 206 ~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~ 285 (416)
T 3isl_A 206 MAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLE 285 (416)
T ss_dssp EEEEEECHHHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECHHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999988776311 0000 000111334567777777788876654
Q ss_pred h---cHHHHHHHHHHHHHHhHhhccCCCceeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc-CceEEee
Q 013204 331 R---NIVEQVNKIAPKFQDGVKAFSDSPIIGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH-GMLVRVS 405 (447)
Q Consensus 331 ~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~ 405 (447)
. +..++++++.+++.+.|+++ +..+.... ...+.++.+.+.+.. ....+.+.|+++ ||.+.++
T Consensus 286 ~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~L~~~~gi~v~~g 353 (416)
T 3isl_A 286 EGLETRFERHRHHEAALAAGIKAM-GLRLFGDDSCKMPVVTCVEIPGGI-----------DGESVRDMLLAQFGIEIASS 353 (416)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCTTEEEEECCTTC-----------CHHHHHHHHHHHHCEECBCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCccccCCcEEEEeCCCCC-----------CHHHHHHHHHHhCCEEEecC
Confidence 3 56778888888898888875 33322111 112455566654221 145688888887 9998854
Q ss_pred -----CCEEEEecCCCCCHHH-HHHHHHHHHHHHHHH
Q 013204 406 -----GDNIMMSPPFIMSPEE-VDELISKYGKALKAT 436 (447)
Q Consensus 406 -----g~~iR~~~~~~~t~e~-i~~~~~~l~~~l~~~ 436 (447)
++.+|++++...++++ |++++++|+++++++
T Consensus 354 ~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~ 390 (416)
T 3isl_A 354 FGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRH 390 (416)
T ss_dssp CSTTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHc
Confidence 3679999866666666 999999999998765
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.1e-22 Score=194.01 Aligned_cols=324 Identities=15% Similarity=0.136 Sum_probs=209.5
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCC-eEEEeCChhhHHHHHHHHHHHHHHhcCCCCcc
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMA-KVFFTNSGSEANDTQVKLVWYYNNALGRPNKK 128 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~ 128 (447)
-+|++.+++.+..... ++ ..+.....++.+.+++.+. .+.+ ++++++||++|++.+++.+. .+++
T Consensus 29 ~~~~v~~a~~~~~~~~--~~---~~~~~~~~~l~~~la~~~~-~~~~~~v~~~~g~t~al~~~~~~~~--------~~gd 94 (396)
T 2ch1_A 29 CSKRVLTAMTNTVLSN--FH---AELFRTMDEVKDGLRYIFQ-TENRATMCVSGSAHAGMEAMLSNLL--------EEGD 94 (396)
T ss_dssp CCHHHHHHTTSCCCCT--TC---HHHHHHHHHHHHHHHHHHT-CCCSCEEEESSCHHHHHHHHHHHHC--------CTTC
T ss_pred CCHHHHHHhccccccC--CC---hhHHHHHHHHHHHHHHHhC-CCCCcEEEECCcHHHHHHHHHHHhc--------CCCC
Confidence 4678887776544321 11 0112347788899998874 3555 79999999999999999773 3347
Q ss_pred eEEEEcCCCccchh-hhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEE
Q 013204 129 KFIARQKSYHGSTL-IAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAA 207 (447)
Q Consensus 129 ~vi~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~ 207 (447)
+|++.+++|++... ......|... ..++.+..+. .+++++++.+... ++++
T Consensus 95 ~vl~~~~~~~~~~~~~~~~~~g~~~------------~~v~~~~~~~-------------~d~~~l~~~l~~~---~~~~ 146 (396)
T 2ch1_A 95 RVLIAVNGIWAERAVEMSERYGADV------------RTIEGPPDRP-------------FSLETLARAIELH---QPKC 146 (396)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTCEE------------EEEECCTTSC-------------CCHHHHHHHHHHH---CCSE
T ss_pred eEEEEcCCcccHHHHHHHHHcCCce------------EEecCCCCCC-------------CCHHHHHHHHHhC---CCCE
Confidence 89999999998742 1222222211 1122211100 0137788777632 3457
Q ss_pred EEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec--ccCCCcccceeEE
Q 013204 208 FIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMPIGAI 285 (447)
Q Consensus 208 vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l~gg~~~~g~~ 285 (447)
|++++.++.+|.+.+ +++|.++|++||+++|+||+|+ +|.. ..... ...+|++++| |.++++ .++|++
T Consensus 147 v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~Dea~~-~g~~--~~~~~--~~~~d~~~~s~~K~~~~~-~g~g~~ 216 (396)
T 2ch1_A 147 LFLTHGDSSSGLLQP----LEGVGQICHQHDCLLIVDAVAS-LCGV--PFYMD--KWEIDAVYTGAQKVLGAP-PGITPI 216 (396)
T ss_dssp EEEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTB--CCCTT--TTTCCEEECCCC-CCCCC-SSCEEE
T ss_pred EEEECCCCCCceecC----HHHHHHHHHHcCCEEEEEcccc-ccCC--ccchh--hcCcCEEEEcCCccccCC-CCeEEE
Confidence 777777777777766 8899999999999999999997 6533 22222 2346887765 988876 688999
Q ss_pred EeChhHHHHhhhccCCCCcc----------------CcCCCCCCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHH
Q 013204 286 LVSPEVSEVIHSQSNTLGSF----------------SHGFTYSGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQD 346 (447)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~----------------~~~~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~ 346 (447)
++++++++.+.....+.+.+ .....++.+..++.++.++++.+.+ ++..++++++++++.+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~ 296 (396)
T 2ch1_A 217 SISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYE 296 (396)
T ss_dssp EECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred EECHHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99999888775321000000 0112334567777888888886543 3456778888888888
Q ss_pred hHhhccCCCceeeEe--eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc-CceEEee-----CCEEEEec-CCCC
Q 013204 347 GVKAFSDSPIIGEIR--GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH-GMLVRVS-----GDNIMMSP-PFIM 417 (447)
Q Consensus 347 ~L~~l~~~~~~~~~~--~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~-----g~~iR~~~-~~~~ 417 (447)
.|+++ +..+..... ..+.++.+.+.... ....+.+.|+++ ||.+.++ .+.+|+++ ++..
T Consensus 297 ~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~ 364 (396)
T 2ch1_A 297 GLGKM-GLDIFVKDPRHRLPTVTGIMIPKGV-----------DWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECS 364 (396)
T ss_dssp HHHHH-TCCBSSCSGGGBCTTEEEEECCTTC-----------CHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGC
T ss_pred HHHHC-CCeeccCCccccCCceEEEEcCCCC-----------CHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcC
Confidence 88876 333322111 12235556553211 145688888875 9998864 36799998 5677
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 013204 418 SPEEVDELISKYGKALKATE 437 (447)
Q Consensus 418 t~e~i~~~~~~l~~~l~~~~ 437 (447)
+++++++++++|++++++++
T Consensus 365 ~~e~i~~~~~~l~~~l~~~~ 384 (396)
T 2ch1_A 365 TVQKIQFYLYGFKESLKATH 384 (396)
T ss_dssp SHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999998764
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.90 E-value=4.7e-22 Score=190.97 Aligned_cols=318 Identities=13% Similarity=0.047 Sum_probs=206.9
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcce
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 129 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~ 129 (447)
.+|++++++.+++... .+ ....+...++.+++++++. .+.+++++++||++|++.+++.+. .++++
T Consensus 12 ~~~~v~~a~~~~~~~~-~~----~~~~~~~~~l~~~la~~~g-~~~~~i~~~~g~t~a~~~~~~~~~--------~~gd~ 77 (352)
T 1iug_A 12 LHPKALEALARPQLHH-RT----EAAREVFLKARGLLREAFR-TEGEVLILTGSGTLAMEALVKNLF--------APGER 77 (352)
T ss_dssp CCHHHHHHHHSCCCCT-TS----HHHHHHHHHHHHHHHHHHT-CSSEEEEEESCHHHHHHHHHHHHC--------CTTCE
T ss_pred CCHHHHHHhccCCCCc-cC----HHHHHHHHHHHHHHHHHhC-CCCceEEEcCchHHHHHHHHHhcc--------CCCCe
Confidence 6899999988776421 11 1123446788899998874 345789999999999999999763 23478
Q ss_pred EEEEcCCCccchhhhh-cccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEE
Q 013204 130 FIARQKSYHGSTLIAA-SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAF 208 (447)
Q Consensus 130 vi~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~v 208 (447)
|++.++.|++...... ...|... ..++.+..+.. + ++++++ +++++|
T Consensus 78 vl~~~~~~~~~~~~~~~~~~g~~~------------~~v~~~~~~~~-----d--------~~~l~~-------~~~~~v 125 (352)
T 1iug_A 78 VLVPVYGKFSERFYEIALEAGLVV------------ERLDYPYGDTP-----R--------PEDVAK-------EGYAGL 125 (352)
T ss_dssp EEEEECSHHHHHHHHHHHHTTCEE------------EEEECCTTCCC-----C--------TTTSCC-------SSCSEE
T ss_pred EEEEeCCchhHHHHHHHHHcCCce------------EEEeCCCCCCC-----C--------HHHHhc-------cCCcEE
Confidence 9999999988751111 1122211 11222111000 0 133332 235577
Q ss_pred EEccccCCCCCccCChhHHHHHHHHHHhc--CCEEEEehhhcCCCccccccccccCCCCCCeeee--cccCCCcccceeE
Q 013204 209 IAEPVIGAGGVIPPPATYFEKVQAVVKKY--DILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF--AKALSSAYMPIGA 284 (447)
Q Consensus 209 i~epv~~~~G~~~~~~~~l~~l~~l~~~~--g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~--sK~l~gg~~~~g~ 284 (447)
++++.++.+|.+.+ +++|.++|++| |+++|+||+|+ +|.. .+.... ..+|++++ +|.+.++ .++|+
T Consensus 126 ~~~~~~nptG~~~~----l~~i~~l~~~~~~~~~li~D~a~~-~~~~--~~~~~~--~~~d~~~~s~~K~~~~~-~g~G~ 195 (352)
T 1iug_A 126 LLVHSETSTGALAD----LPALARAFKEKNPEGLVGADMVTS-LLVG--EVALEA--MGVDAAASGSQKGLMCP-PGLGF 195 (352)
T ss_dssp EEESEETTTTEECC----HHHHHHHHHHHCTTCEEEEECTTT-BTTB--CCCSGG--GTCSEEEEESSSTTCCC-SCEEE
T ss_pred EEEEecCCcceecC----HHHHHHHHHhhCCCCEEEEECCcc-ccCc--ceeccc--cCeeEEEecCcccccCC-CceeE
Confidence 88888888887776 89999999999 99999999997 5433 122222 23677754 6988776 57899
Q ss_pred EEeChhHHHHhhhccC------CCCcc-CcCCCCCCcHHHHHHHHHHHHHHhhh--cHHHHHHHHHHHHHHhHhhccCCC
Q 013204 285 ILVSPEVSEVIHSQSN------TLGSF-SHGFTYSGHPVSCAVAIEALKIYKER--NIVEQVNKIAPKFQDGVKAFSDSP 355 (447)
Q Consensus 285 ~~~~~~~~~~~~~~~~------~~~~~-~~~~t~~~~~~~~~aa~a~l~~~~~~--~~~~~~~~~~~~l~~~L~~l~~~~ 355 (447)
+++++++++.+..... ..... ....+++.++.+++++.++++.+.+. +..++++++.+++.+.|+++ +..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 274 (352)
T 1iug_A 196 VALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG-GLR 274 (352)
T ss_dssp EEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT-TCE
T ss_pred EEECHHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCc
Confidence 9999987654210000 00000 01124456777888788888876543 56677788888888888775 322
Q ss_pred ceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-----CCEEEEecCCCCCHHHHHHHHHHHH
Q 013204 356 IIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-----GDNIMMSPPFIMSPEEVDELISKYG 430 (447)
Q Consensus 356 ~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----g~~iR~~~~~~~t~e~i~~~~~~l~ 430 (447)
+.... ..+.++.+.+.+.. ....+.+.|.++||.+.++ .+.+|++++..++++++++++++|+
T Consensus 275 ~~~~~-~~~~~~~~~~~~~~-----------~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~ 342 (352)
T 1iug_A 275 PVPKR-FSPAVAAFYLPEGV-----------PYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFR 342 (352)
T ss_dssp ESCSS-BCTTCEEEECCTTC-----------CHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHH
T ss_pred ccccc-cCCeEEEEEcCCCC-----------CHHHHHHHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHH
Confidence 21110 14556666664211 1456888999999999875 2679999988889999999999999
Q ss_pred HHHHHH
Q 013204 431 KALKAT 436 (447)
Q Consensus 431 ~~l~~~ 436 (447)
++++++
T Consensus 343 ~~~~~~ 348 (352)
T 1iug_A 343 EVLEEI 348 (352)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998765
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.5e-23 Score=201.42 Aligned_cols=304 Identities=10% Similarity=0.093 Sum_probs=197.1
Q ss_pred hHHHHHHHHHHHhcCcCCCCeEEEeCChhhHH--HHHHHHHHHHHHhcCCC---------CcceEEEEcCCCccchhhhh
Q 013204 77 KPSLDLAKELLEMFTASKMAKVFFTNSGSEAN--DTQVKLVWYYNNALGRP---------NKKKFIARQKSYHGSTLIAA 145 (447)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~--~~Al~~~~~~~~~~~~~---------~~~~vi~~~~~yhg~~~~~~ 145 (447)
....++.+.+++++ ..+++++++++|+++++ +.+++.+.. +.+ .++.|++.+|+|+++.....
T Consensus 78 ~g~~~lr~~ia~~~-~~~~~~i~~t~G~~~al~~~~~~~~l~~-----~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~ 151 (427)
T 3ppl_A 78 DGIVDIRQIWADLL-GVPVEQVLAGDASSLNIMFDVISWSYIF-----GNNDSVQPWSKEETVKWICPVPGYDRHFSITE 151 (427)
T ss_dssp SCCHHHHHHHHHHH-TSCGGGEEECSSCHHHHHHHHHHHHHHH-----CCTTCSSCGGGSSCCEEEEEESCCHHHHHHHH
T ss_pred CCcHHHHHHHHHHh-CCCcceEEEeCCcHHHHHHHHHHHHHhc-----cCCcccccccCCCCCEEEEcCCCcHHHHHHHH
Confidence 34567888888887 35678999999999999 577776542 101 15789999999998865544
Q ss_pred cccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEcc-ccCCCCCccCCh
Q 013204 146 SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEP-VIGAGGVIPPPA 224 (447)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~ep-v~~~~G~~~~~~ 224 (447)
..+.... .++.... + .++++|++.+. ..++++|++.| .++.+|. ..+.
T Consensus 152 ~~g~~~~-------------~v~~~~~------g--------~d~~~l~~~l~---~~~~~~v~~~p~~~NPtG~-~~~~ 200 (427)
T 3ppl_A 152 RFGFEMI-------------SVPMNED------G--------PDMDAVEELVK---NPQVKGMWVVPVFSNPTGF-TVTE 200 (427)
T ss_dssp HTTCEEE-------------EEEEETT------E--------ECHHHHHHHTT---STTEEEEEECCSSCTTTCC-CCCH
T ss_pred HcCCEEE-------------EeCCCCC------C--------CCHHHHHHHHh---cCCCeEEEECCCCCCCCCc-cCCH
Confidence 4322111 1111000 0 11377777763 24577888776 4555664 4566
Q ss_pred hHHHHHHHHH-HhcCCEEEEehhhcCCCccccc--c-c-cc------cCCCCCCeeeecccCCCcccceeEEEeChhHHH
Q 013204 225 TYFEKVQAVV-KKYDILFIADEVICAFGRLGTM--F-G-CD------KYSIKPDLVSFAKALSSAYMPIGAILVSPEVSE 293 (447)
Q Consensus 225 ~~l~~l~~l~-~~~g~~li~DEv~~g~g~~g~~--~-~-~~------~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~ 293 (447)
+.+++|.++| ++||+++|+||+|+++...+.. . . .. ..+....+.+|||.+..| +++|++++++++++
T Consensus 201 ~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G-~r~G~~~~~~~l~~ 279 (427)
T 3ppl_A 201 DVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAG-AGVSFFLTSAENRK 279 (427)
T ss_dssp HHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTT-SSCEEEECCHHHHH
T ss_pred HHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcC-ccEEEEEcCHHHHH
Confidence 7799999999 9999999999999985333321 1 1 11 222333455799985555 89999999999988
Q ss_pred HhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHH---h--hhcHHHHHHHHHHHHHHhHhh-ccCCCceee-EeeeeeE
Q 013204 294 VIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIY---K--ERNIVEQVNKIAPKFQDGVKA-FSDSPIIGE-IRGTGLI 366 (447)
Q Consensus 294 ~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~---~--~~~~~~~~~~~~~~l~~~L~~-l~~~~~~~~-~~~~g~~ 366 (447)
.+... ....++..+++++.++.++++.. . -.+..+.++++.+.+.+.|.+ +...+.+.. ....|.+
T Consensus 280 ~~~~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~ 352 (427)
T 3ppl_A 280 WYTGH-------AGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYF 352 (427)
T ss_dssp HHHHH-------HHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSC
T ss_pred HHHHH-------hhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEE
Confidence 87632 22345667888887777766531 1 122344555555666666644 222222221 2234666
Q ss_pred EEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-----------CCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 367 LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-----------GDNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 367 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+.+.+.... ...+.+.|.++||.+.++ .+.+|+++... ++++|++++++|.+++++
T Consensus 353 ~~~~~~~~~------------~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~l~~ 419 (427)
T 3ppl_A 353 ISLDVVPGT------------ASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLP-PVEELEVAMDGVATCVLL 419 (427)
T ss_dssp EEEECSTTC------------HHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSS-CHHHHHHHHHHHHHHHHH
T ss_pred EEEECCcch------------HHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCC-CHHHHHHHHHHHHHHHHH
Confidence 777765421 445788899999999872 25699997644 999999999999999987
Q ss_pred HHH
Q 013204 436 TEE 438 (447)
Q Consensus 436 ~~~ 438 (447)
+..
T Consensus 420 ~~~ 422 (427)
T 3ppl_A 420 AAA 422 (427)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-22 Score=193.22 Aligned_cols=321 Identities=14% Similarity=0.084 Sum_probs=209.4
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC-CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcc
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS-KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKK 128 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~ 128 (447)
.+|++++++.+++... .+ ....+...++++++++.+... +.+++++++||++|+..+++.+. + +
T Consensus 11 ~~~~v~~a~~~~~~~~-~~----~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~---------~-d 75 (353)
T 2yrr_A 11 IPERVQKALLRPMRGH-LD----PEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD---------R-G 75 (353)
T ss_dssp CCHHHHGGGGSCCCCT-TC----HHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS---------C-C
T ss_pred CCHHHHHHHhcccccc-cC----HHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc---------C-C
Confidence 6789998887766541 11 112345678899999887422 35689999999999999998763 2 6
Q ss_pred eEEEEcCCCccch-hhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEE
Q 013204 129 KFIARQKSYHGST-LIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAA 207 (447)
Q Consensus 129 ~vi~~~~~yhg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~ 207 (447)
+|++.++.||+.. .......|.. +..++.+..+. .+++++++.+... ++++
T Consensus 76 ~vl~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~-------------~d~~~l~~~l~~~---~~~~ 127 (353)
T 2yrr_A 76 PVLVLVNGAFSQRVAEMAALHGLD------------PEVLDFPPGEP-------------VDPEAVARALKRR---RYRM 127 (353)
T ss_dssp CEEEEECSHHHHHHHHHHHHTTCC------------EEEEECCTTSC-------------CCHHHHHHHHHHS---CCSE
T ss_pred cEEEEcCCCchHHHHHHHHHcCCc------------eEEEeCCCCCC-------------CCHHHHHHHHHhC---CCCE
Confidence 7899999998862 1111112211 11222211100 1147788877642 4567
Q ss_pred EEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeee--cccCCCcccceeEE
Q 013204 208 FIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF--AKALSSAYMPIGAI 285 (447)
Q Consensus 208 vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~--sK~l~gg~~~~g~~ 285 (447)
|+++++++.+|.+.+ +++|.++|++||+++|+||+|+ +|... .....+ .+|++++ +|.++++ .++|++
T Consensus 128 v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~D~a~~-~~~~~--~~~~~~--~~d~~~~s~~K~~~~~-~g~G~~ 197 (353)
T 2yrr_A 128 VALVHGETSTGVLNP----AEAIGALAKEAGALFFLDAVTT-LGMLP--FSMRAM--GVDYAFTGSQKCLSAP-PGLAPI 197 (353)
T ss_dssp EEEESEETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCHHHH--TCSEEECCTTSTTCCC-SSCEEE
T ss_pred EEEEccCCCcceecC----HHHHHHHHHHcCCeEEEEcCcc-ccccc--cccccc--CceEEEecCcccccCC-CceEEE
Confidence 788888888887776 8999999999999999999995 65442 222222 3687765 5988776 478999
Q ss_pred EeChhHHHHhhhccCCC-------Ccc-CcCCCCCCcHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHhHhhccCC
Q 013204 286 LVSPEVSEVIHSQSNTL-------GSF-SHGFTYSGHPVSCAVAIEALKIYKER---NIVEQVNKIAPKFQDGVKAFSDS 354 (447)
Q Consensus 286 ~~~~~~~~~~~~~~~~~-------~~~-~~~~t~~~~~~~~~aa~a~l~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~ 354 (447)
++++++++.+....... +.. .....++.++.+++++.++++.+.+. +..++++++.+++++.|+++ +.
T Consensus 198 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~ 276 (353)
T 2yrr_A 198 AASLEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR-GF 276 (353)
T ss_dssp EECHHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred EECHHHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CC
Confidence 99999887764100000 000 01123455777777777888776543 45677888888888888775 32
Q ss_pred CceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-----CEEEEecCCCCCHHHHH-HHHHH
Q 013204 355 PIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-----DNIMMSPPFIMSPEEVD-ELISK 428 (447)
Q Consensus 355 ~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-----~~iR~~~~~~~t~e~i~-~~~~~ 428 (447)
.+.......+.++.+.+.... ....+.+.|.++||.+.++. +.+|++++...++++++ +++++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~ 345 (353)
T 2yrr_A 277 RPYPKASPLPTVLVVRPPEGV-----------DADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKA 345 (353)
T ss_dssp EESCSSSBCTTEEEEECCTTC-----------CHHHHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHH
T ss_pred ccccCccCCCeEEEEECCCCC-----------CHHHHHHHHHHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHH
Confidence 222111113445556653211 14568889999999998653 57999987788999999 99999
Q ss_pred HHHHHHH
Q 013204 429 YGKALKA 435 (447)
Q Consensus 429 l~~~l~~ 435 (447)
|++++++
T Consensus 346 l~~~l~~ 352 (353)
T 2yrr_A 346 LDRALAL 352 (353)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9988753
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-21 Score=189.32 Aligned_cols=282 Identities=15% Similarity=0.141 Sum_probs=187.2
Q ss_pred CCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh---hcccCC
Q 013204 74 RTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA---ASLSGL 150 (447)
Q Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~---~~~~~~ 150 (447)
.+.+...++++++++++.. ++.++++||++|++.+++.+. .++++|++.++.||+..... ....+.
T Consensus 49 ~~~~~~~~l~~~la~~~~~---~~~i~~~sGt~a~~~~~~~~~--------~~g~~vl~~~~~~~~~~~~~~~~~~~~g~ 117 (386)
T 1cs1_A 49 RGNPTRDVVQRALAELEGG---AGAVLTNTGMSAIHLVTTVFL--------KPGDLLVAPHDCYGGSYRLFDSLAKRGCY 117 (386)
T ss_dssp TCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHHHHHTTTSC
T ss_pred CCCccHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHHh--------CCCCEEEEecCCcHhHHHHHHHHHHhcCC
Confidence 3567788999999999732 255666788999999999763 33578999999998853221 111111
Q ss_pred ccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHH
Q 013204 151 PALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKV 230 (447)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l 230 (447)
. +..++.. +++++++.+. +++++|+++++++.+|.+.+ +++|
T Consensus 118 ~------------~~~~~~~------------------d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i 159 (386)
T 1cs1_A 118 R------------VLFVDQG------------------DEQALRAALA----EKPKLVLVESPSNPLLRVVD----IAKI 159 (386)
T ss_dssp E------------EEEECTT------------------CHHHHHHHHH----TCCSEEEEECSCTTTCCCCC----HHHH
T ss_pred E------------EEEeCCC------------------CHHHHHHhhc----cCCcEEEEeCCCCCCCcccC----HHHH
Confidence 1 1112211 1477888776 25678889999999888876 9999
Q ss_pred HHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCcccce-eEEEeCh-hHHHHhhhccCCCCccC
Q 013204 231 QAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSAYMPI-GAILVSP-EVSEVIHSQSNTLGSFS 306 (447)
Q Consensus 231 ~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg~~~~-g~~~~~~-~~~~~~~~~~~~~~~~~ 306 (447)
.++|++||+++|+||+|+++... .. . ...+|++ +++|.+++++.++ |++++++ ++++.+... .
T Consensus 160 ~~l~~~~~~~li~De~~~~~~~~-~~--~---~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~-------~ 226 (386)
T 1cs1_A 160 CHLAREVGAVSVVDNTFLSPALQ-NP--L---ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWW-------A 226 (386)
T ss_dssp HHHHHHTTCEEEEECTTTCTTTC-CG--G---GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHH-------H
T ss_pred HHHHHHcCCEEEEECCCcccccC-Cc--c---ccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHH-------H
Confidence 99999999999999999866432 11 1 1345666 6789998765565 8999886 787777531 2
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccC-----CCcee----------eEeeeeeEEEEEe
Q 013204 307 HGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD-----SPIIG----------EIRGTGLILGTEF 371 (447)
Q Consensus 307 ~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~-----~~~~~----------~~~~~g~~~~i~~ 371 (447)
...+...+++++.++.++++.+ +...+...++.+.+.+.|+++.. ++.+. ..++.|.++.+.+
T Consensus 227 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 304 (386)
T 1cs1_A 227 NNIGVTGGAFDSYLLLRGLRTL--VPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFEL 304 (386)
T ss_dssp HHHTCBCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEE
T ss_pred HhcCCCCCHHHHHHHHhcccHH--HHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEE
Confidence 2224556888887777776643 22344555566666666655311 11100 0134577877776
Q ss_pred ecCCCCCCCCCCCcchHHHHHHHHHHcCceEEe---e----------------------------CCEEEEecCCCCCHH
Q 013204 372 ADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV---S----------------------------GDNIMMSPPFIMSPE 420 (447)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~---~----------------------------g~~iR~~~~~~~t~e 420 (447)
... ...+.+.|.++||++.. + .+.+|+++++..+++
T Consensus 305 ~~~-------------~~~~~~~l~~~gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~ 371 (386)
T 1cs1_A 305 DGD-------------EQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGED 371 (386)
T ss_dssp SSC-------------HHHHHHHHHTCSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHH
T ss_pred CCC-------------HHHHHHHHHhCCcceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHH
Confidence 531 23466778889999873 1 257999999977788
Q ss_pred HHHHHHHHHHHH
Q 013204 421 EVDELISKYGKA 432 (447)
Q Consensus 421 ~i~~~~~~l~~~ 432 (447)
+|+.+.+.|++.
T Consensus 372 ~i~~l~~al~~~ 383 (386)
T 1cs1_A 372 LIADLENGFRAA 383 (386)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 777777776654
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.89 E-value=9.5e-22 Score=192.69 Aligned_cols=333 Identities=13% Similarity=0.071 Sum_probs=205.4
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHh-cCCccccc--CcCCChHHHHHH----HHHHHhcCcCCCCeEEEeCChh
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLN-TLPFYHSF--WNRTTKPSLDLA----KELLEMFTASKMAKVFFTNSGS 105 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~~~~~~~--~~~~~~~~~~l~----~~l~~~~~~~~~~~v~~~~sGs 105 (447)
+.++|+.++ +++ +|++++++.+++. .....++. .....+...+++ +++++.+. .+ ...+++++|+
T Consensus 24 ~~~~~~~~~---~~~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g-~~-~~~i~~~sGt 95 (405)
T 2vi8_A 24 AKIELIASE---NFV---SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFG-AE-HANVQPHSGA 95 (405)
T ss_dssp HSEECCTTC---CCC---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT-CS-EEECCCSSHH
T ss_pred cceeeccCc---ccC---CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhC-CC-ceEEEecCcH
Confidence 457888655 343 8999999999885 33221111 011123344444 57777763 22 2345567889
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh--hcccCCccccCCCCCCCCcceecCCC-CcccCCCCCCCh
Q 013204 106 EANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA--ASLSGLPALHQKFDLPAPFVLHTDCP-HYWRYAHPGETE 182 (447)
Q Consensus 106 eA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 182 (447)
+|++.+++.+. .+++.|++.++.|++..... ....+.. . ....++.. ..+.
T Consensus 96 ~a~~~a~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~-~---------~~~~~~~~~~~~~-------- 149 (405)
T 2vi8_A 96 QANMAVYFTVL--------EHGDTVLGMNLSHGGHLTHGSPVNFSGVQ-Y---------NFVAYGVDPETHV-------- 149 (405)
T ss_dssp HHHHHHHHHHC--------CTTCEEEEECGGGTCCTTTTCTTSHHHHH-S---------EEEEECBCTTTCS--------
T ss_pred HHHHHHHHHhc--------CCCCEEEEecccccchhcccchhhhccce-e---------EEEecccccccCC--------
Confidence 99999999873 33478888887665542111 1111100 0 00111110 0000
Q ss_pred hHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccC
Q 013204 183 EEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKY 262 (447)
Q Consensus 183 ~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~ 262 (447)
.+++++++.+... ++++|++.|.+. |...+ +++|.++|++||+++|+||+|+ +|+.+... ...
T Consensus 150 -----~d~~~l~~~i~~~---~~~~v~~~~~~~--~~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~~~~--~~~ 212 (405)
T 2vi8_A 150 -----IDYDDVREKARLH---RPKLIVAAAAAY--PRIID----FAKFREIADEVGAYLMVDMAHI-AGLVAAGL--HPN 212 (405)
T ss_dssp -----BCHHHHHHHHHHH---CCSEEEECCSSC--CSCCC----HHHHHHHHHHHTCEEEEECTTT-HHHHHTTS--SCC
T ss_pred -----cCHHHHHHHHHhc---CCeEEEEeCCCC--CccCC----HHHHHHHHHHcCCEEEEEcccc-ccccccCc--CCC
Confidence 0147788777642 235666654332 32222 8999999999999999999998 55443211 111
Q ss_pred CC-CCCee--eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCC-CCcHHHHHHHHHHHHHHhh---hcHHH
Q 013204 263 SI-KPDLV--SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTY-SGHPVSCAVAIEALKIYKE---RNIVE 335 (447)
Q Consensus 263 ~~-~~d~v--~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~-~~~~~~~~aa~a~l~~~~~---~~~~~ 335 (447)
.+ .+|++ +++|.++|+ .+ |++++++++++.+.... ...++ +.++..++++.++++.+.. ++..+
T Consensus 213 ~~~~~di~~~s~sK~~~g~-~g-G~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~ 283 (405)
T 2vi8_A 213 PVPYAHFVTTTTHKTLRGP-RG-GMILCQEQFAKQIDKAI-------FPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAK 283 (405)
T ss_dssp STTTCSEEEEESSSTTCCC-SC-EEEEECHHHHHHHHHHH-------TTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ccccCCEEEEeccccCCCC-CC-eEEEEcHHHHHHHHhhh-------cccccCCCCHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 12 47877 678999865 34 99999999888776421 11122 3466677776777876543 45678
Q ss_pred HHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee----------
Q 013204 336 QVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS---------- 405 (447)
Q Consensus 336 ~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---------- 405 (447)
+++++.+++.+.|+++ +..+... .+.+.++.+.+..... ....+.+.|.++||.+.++
T Consensus 284 ~~~~~~~~l~~~L~~~-g~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~ 351 (405)
T 2vi8_A 284 RVVDNAKRLASALQNE-GFTLVSG-GTDNHLLLVDLRPQQL----------TGKTAEKVLDEVGITVNKNTIPYDPESPF 351 (405)
T ss_dssp HHHHHHHHHHHHHHHT-TCEEGGG-SCSSSEEEEECGGGTC----------CHHHHHHHHHHHTEECEEECCTTCSSCTT
T ss_pred HHHHHHHHHHHHHHhC-CCeEecC-CCCceEEEEEccCCCC----------CHHHHHHHHHHcCceeccCcCccccCCCC
Confidence 8888888998888876 3222111 1346677777753210 1445778888999998874
Q ss_pred -CCEEEEecCC----CCCHHHHHHHHHHHHHHHHHHH
Q 013204 406 -GDNIMMSPPF----IMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 406 -g~~iR~~~~~----~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
.+.+|++++. .++++++++++++|++++++++
T Consensus 352 ~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~~ 388 (405)
T 2vi8_A 352 VTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNVG 388 (405)
T ss_dssp TCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCTT
T ss_pred CCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhccc
Confidence 2469999886 5789999999999999987664
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.2e-22 Score=197.04 Aligned_cols=361 Identities=15% Similarity=0.110 Sum_probs=200.4
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCc----CCChHHHHHHHHHHHhcCcCCCCeEEEeCChh
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWN----RTTKPSLDLAKELLEMFTASKMAKVFFTNSGS 105 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~----~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGs 105 (447)
.++..|||+.++. +.+|++++++.+++.....+..... ...+...++.+++++++. .+.++++|++||+
T Consensus 16 ~~~~~~Ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g-~~~~~v~~~~g~t 88 (432)
T 3a9z_A 16 PNRKVYMDYNATT------PLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIG-GKPQDIIFTSGGT 88 (432)
T ss_dssp --CCEECBTTTCC------CCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHT-CCGGGEEEESCHH
T ss_pred CCCcEEeeCCccC------CCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcC-CCcCeEEEeCChH
Confidence 4678899986552 5799999999998876321111000 012335688889998874 4567899999999
Q ss_pred hHHHHHHHHHHH-HHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCC----CCCCcceecCCCC-cccCCCCC
Q 013204 106 EANDTQVKLVWY-YNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFD----LPAPFVLHTDCPH-YWRYAHPG 179 (447)
Q Consensus 106 eA~~~Al~~~~~-~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~ 179 (447)
+|++.+++.+.. +.....++ +++|++++|+||++.....+...++.....+. .....+..++... .+.
T Consensus 89 ~a~~~~~~~~~~~~~~~~~~~-gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~----- 162 (432)
T 3a9z_A 89 ESNNLVIHSTVRCFHEQQTLQ-GRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQ----- 162 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSS-----
T ss_pred HHHHHHHHHHHhhhhhccccC-CccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCC-----
Confidence 999999997742 11100002 36788999999875211111111110000000 0001112222211 000
Q ss_pred CChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcC----------CEEEEehhhcC
Q 013204 180 ETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYD----------ILFIADEVICA 249 (447)
Q Consensus 180 ~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g----------~~li~DEv~~g 249 (447)
.++++|++.+. +++++|+++++++.+|.+.+ +++|.++|++|| +++|+||+|.
T Consensus 163 --------~d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~~~~~~~livDea~~- 225 (432)
T 3a9z_A 163 --------VEVEDILAAVR----PTTCLVTIMLANNETGVIMP----ISEISRRIKALNQIRAASGLPRVLVHTDAAQA- 225 (432)
T ss_dssp --------CCHHHHHHTCC----TTEEEEECCSBCTTTCBBCC----HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTT-
T ss_pred --------cCHHHHHHhcc----CCceEEEEECcccCcccccC----HHHHHHHHHhcCcccccccCCceEEEEEchhh-
Confidence 01366666553 35788999999888888877 889999999999 9999999995
Q ss_pred CCccccccccccCCCCCCeeee--cccCCCcccceeEEEeChhH-HHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHH
Q 013204 250 FGRLGTMFGCDKYSIKPDLVSF--AKALSSAYMPIGAILVSPEV-SEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALK 326 (447)
Q Consensus 250 ~g~~g~~~~~~~~~~~~d~v~~--sK~l~gg~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~ 326 (447)
+|... .... ...+|++++ +|.++ +++|++++++++ ...+.......+......+++.++.+++++.++++
T Consensus 226 ~~~~~--~~~~--~~~~d~~~~s~~K~~g---~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~ 298 (432)
T 3a9z_A 226 LGKRR--VDVE--DLGVDFLTIVGHKFYG---PRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAAD 298 (432)
T ss_dssp TTTSC--CCHH--HHCCSEEEEEGGGTTC---CSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHH
T ss_pred hCCcc--cChh--hcCCCEEEEehhHhcC---CcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHH
Confidence 54431 1111 234787754 89763 569999998875 22222100000000112245567888888878888
Q ss_pred HHhh--hcHHHHHHHHHHHHHHhHhhccCCCce--ee---EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHH----
Q 013204 327 IYKE--RNIVEQVNKIAPKFQDGVKAFSDSPII--GE---IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQC---- 395 (447)
Q Consensus 327 ~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~--~~---~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l---- 395 (447)
.+.+ ++..++++++.+++.+.|+++....+. .. ....+.+..+.+...... ...+.+.+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~i~ 368 (432)
T 3a9z_A 299 LVSENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLR----------GYMVLAQCQTLL 368 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTCC----------HHHHHHHCSSEE
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCCc----------HHHHHHHhcCeE
Confidence 6654 456678888888888888775221111 00 112344555666532100 12232222
Q ss_pred -------------------HHcCceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 396 -------------------EKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 396 -------------------~~~Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
...|+......+.+|++++..+|++++++++++|++++++++
T Consensus 369 ~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~ 429 (432)
T 3a9z_A 369 ASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLE 429 (432)
T ss_dssp CBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 122221111236799999988899999999999999987654
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-22 Score=197.92 Aligned_cols=341 Identities=15% Similarity=0.110 Sum_probs=190.4
Q ss_pred eCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCc----ccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCCh
Q 013204 29 DVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPF----YHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSG 104 (447)
Q Consensus 29 d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sG 104 (447)
+.++..|||+.++ +..+|++.+++.+++.+... .+.......+...++++++++.+. .+++++++++||
T Consensus 17 ~~~~~iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~-~~~~~v~~~~g~ 89 (400)
T 3vax_A 17 RGSHMTYLDAAAT------TRVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVS-AEPDELIFTSGA 89 (400)
T ss_dssp -----CCCCCCCC------SSSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTT-CCGGGEEEESCH
T ss_pred ccCCcEEecCCCC------CCCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcC-CCCCcEEEeCCH
Confidence 3567789998655 24689999999998864211 011101123446778888888873 456789999999
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcc-eEEEEcCCCccchhhhhcc--cCCccccCCCCCCCCcceecCCCCcccCCCCCCC
Q 013204 105 SEANDTQVKLVWYYNNALGRPNKK-KFIARQKSYHGSTLIAASL--SGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGET 181 (447)
Q Consensus 105 seA~~~Al~~~~~~~~~~~~~~~~-~vi~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (447)
++|++.+++.+..+... + ++ .|++..+.|++........ .|.. +..++....+.
T Consensus 90 t~al~~~~~~l~~~~~~---~-gd~~Vl~~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~------- 146 (400)
T 3vax_A 90 TESNNIALLGLAPYGER---T-GRRHIITSAIEHKAVLEPLEHLAGRGFE------------VDFLTPGPSGR------- 146 (400)
T ss_dssp HHHHHHHHHTTHHHHHH---H-TCCEEEEETTSCHHHHHHHHHHHTTTCE------------EEEECCCTTCC-------
T ss_pred HHHHHHHHHHHHHhhcc---C-CCCEEEECccccHhHHHHHHHHHhcCCe------------EEEEccCCCCC-------
Confidence 99999999976422111 1 35 7888887777654332221 1211 11222211110
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccccccc
Q 013204 182 EEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDK 261 (447)
Q Consensus 182 ~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~ 261 (447)
.++++|++.+. +++++|+++++++.+|.+.+ +++|.++|++||+++|+||+|+ ++... ...
T Consensus 147 ------~d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~~----~~~ 207 (400)
T 3vax_A 147 ------ISVEGVMERLR----PDTLLVSLMHVNNETGVIQP----VAELAQQLRATPTYLHVDAAQG-YGKVP----GDL 207 (400)
T ss_dssp ------CCHHHHHTTCC----TTEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSCEEEEECTTT-TTTSG----GGG
T ss_pred ------cCHHHHHHhcC----CCceEEEEECCCCCceeeCc----HHHHHHHHHhcCCEEEEEhhhh-cCCCC----cCh
Confidence 01366666553 35789999999988888776 8999999999999999999997 43322 122
Q ss_pred CCCCCCeeeec--ccCCCcccceeEEE-eChh-HH---HHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh--hc
Q 013204 262 YSIKPDLVSFA--KALSSAYMPIGAIL-VSPE-VS---EVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE--RN 332 (447)
Q Consensus 262 ~~~~~d~v~~s--K~l~gg~~~~g~~~-~~~~-~~---~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~--~~ 332 (447)
... +|++++| | +.|+ .++|+++ ++++ +. ..+................+.++.+++++.++++.+.+ ++
T Consensus 208 ~~~-~d~~~~s~~K-~~g~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~ 284 (400)
T 3vax_A 208 TTP-IDMISISGHK-IGAP-KGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQ 284 (400)
T ss_dssp GSC-CSEEEEETGG-GTSC-SSCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHH
T ss_pred hhc-CcEEEEeHHH-hCCC-CceEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHH
Confidence 233 8888655 9 4443 4688888 7762 11 11110000000000112345577777777778876654 45
Q ss_pred HHHHHHHHHHHHHHhHhhccCCCceeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee------
Q 013204 333 IVEQVNKIAPKFQDGVKAFSDSPIIGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS------ 405 (447)
Q Consensus 333 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------ 405 (447)
..++.+++.+++.+.|+ +.+..+.... ...+.++.+.+... ....+.+.|. +||.+.++
T Consensus 285 ~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~L~-~gi~v~~g~~~~~~ 350 (400)
T 3vax_A 285 WQVAAQDLRSRLLAGLA-STSFQVNGDQDHVVPHILNLSFEDV------------DAEAFLVTLK-DLVAVATGSASTSA 350 (400)
T ss_dssp HHHHHHHHHHHHHHHHT-TTTCEECSCTTSBCTTEEEEECTTC------------CHHHHHHHHH-HHHHHTTTTEEEEE
T ss_pred HHHHHHHHHHHHHHhhC-CCCEEEeCCcccCCCCEEEEEeCCC------------CHHHHHHHHh-cCcEEEecccccCC
Confidence 66777788888888877 4222211111 11233555554421 1456778888 88876542
Q ss_pred ------------------CCEEEEec-CCCCCHHHHHHHHHHHHHHHHH
Q 013204 406 ------------------GDNIMMSP-PFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 406 ------------------g~~iR~~~-~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
.+.+|+++ +..++++++++++++|++++++
T Consensus 351 ~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 351 SFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp EECCHHHHHTTTCCHHHHTSEEEEEEEEC--------------------
T ss_pred CCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 26799998 8889999999999999988754
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.7e-21 Score=186.37 Aligned_cols=305 Identities=12% Similarity=0.101 Sum_probs=198.6
Q ss_pred ccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCC
Q 013204 45 TALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGR 124 (447)
Q Consensus 45 ~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~ 124 (447)
+.+++.+|+.++++.. ....+.++ ....+...++++++++++ +.+++++++||++|+..+++.+.
T Consensus 28 ~~~~~~~~~~~~~~~~--~~~~~~y~--~~~~~~~~~l~~~la~~~---g~~~~~~~~~gt~a~~~al~~l~-------- 92 (412)
T 2cb1_A 28 AAYGFKTLEEGQERFA--TGEGYVYA--RQKDPTAKALEERLKALE---GALEAVVLASGQAATFAALLALL-------- 92 (412)
T ss_dssp SBCCCSSHHHHHHHHH--HCCSCSBT--TTCCHHHHHHHHHHHHHH---TCSEEEEESSHHHHHHHHHHTTC--------
T ss_pred ceeecCChHHHHHHhc--cccCcCcC--CCCChHHHHHHHHHHHHh---CCCcEEEECCHHHHHHHHHHHHh--------
Confidence 3567777776666554 22222222 224577889999999987 34589999999999999999652
Q ss_pred CCcceEEEEcCCCccchhhhh---cccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhC
Q 013204 125 PNKKKFIARQKSYHGSTLIAA---SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEG 201 (447)
Q Consensus 125 ~~~~~vi~~~~~yhg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~ 201 (447)
.++++|++.++.|++...... ...|.. +..++.. +++|++.+.
T Consensus 93 ~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~------------~~~~~~~-------------------~~~l~~~i~--- 138 (412)
T 2cb1_A 93 RPGDEVVAAKGLFGQTIGLFGQVLSLMGVT------------VRYVDPE-------------------PEAVREALS--- 138 (412)
T ss_dssp CTTCEEEEETTCCHHHHHHHHHTTTTTTCE------------EEEECSS-------------------HHHHHHHCC---
T ss_pred CCCCEEEEeCCCchhHHHHHHHHHHHcCCE------------EEEECCC-------------------HHHHHHHhc---
Confidence 335789999999977543221 111111 1112210 367777664
Q ss_pred CCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCcc
Q 013204 202 PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSAY 279 (447)
Q Consensus 202 ~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg~ 279 (447)
+++++|+++++++.+|.+.+ +++|.++|++||+++|+||+|++++... ......+|+++ ++|.+++++
T Consensus 139 -~~~~~v~~~~~~n~~G~~~~----l~~i~~l~~~~~~~li~D~~~~~~~~~~-----~~~~~~~di~~~S~~K~~~~~~ 208 (412)
T 2cb1_A 139 -AKTRAVFVETVANPALLVPD----LEALATLAEEAGVALVVDNTFGAAGALC-----RPLAWGAHVVVESLTKWASGHG 208 (412)
T ss_dssp -TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGTTTTSC-----CGGGGTCSEEEEETTTTTTCSS
T ss_pred -cCCeEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEECCCccccccC-----CccccCCeEEEECCcccccCCC
Confidence 36788999999888888876 9999999999999999999998653221 11224578886 789998765
Q ss_pred cceeEEEeCh----------------------------hHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh
Q 013204 280 MPIGAILVSP----------------------------EVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER 331 (447)
Q Consensus 280 ~~~g~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~ 331 (447)
.++|+++..+ ++.+.++... ........+|..++.++..++.+ +
T Consensus 209 ~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~------~~~~g~~~~~~~a~~~~~~l~~l--~ 280 (412)
T 2cb1_A 209 SVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLG------LSLCGMALSPFNAYLLFQGLETV--A 280 (412)
T ss_dssp CCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHH------TTTTCCCCCHHHHHHHHHHGGGH--H
T ss_pred CcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHH------HHhcCCCCChHHhHHHHcCCchH--H
Confidence 6788877543 2333333210 01112245677777666666544 2
Q ss_pred cHHHHHHHHHHHHHHhHhhccCCCcee-e--------------EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH
Q 013204 332 NIVEQVNKIAPKFQDGVKAFSDSPIIG-E--------------IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE 396 (447)
Q Consensus 332 ~~~~~~~~~~~~l~~~L~~l~~~~~~~-~--------------~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 396 (447)
...++..++.+++.+.|.+.+....+. . .++.+.++.+.+ . . ...+.+.+.
T Consensus 281 ~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~-~------------~~~~~~~l~ 346 (412)
T 2cb1_A 281 LRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-G-D------------LERASRFLG 346 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-S-S------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-C-C------------HHHHHHHHH
Confidence 334555677788888887653322110 0 024677888877 3 2 334666777
Q ss_pred HcCceEEee-------------------------------CCEEEEecCCCCCHHHHHHHHHHHHH
Q 013204 397 KHGMLVRVS-------------------------------GDNIMMSPPFIMSPEEVDELISKYGK 431 (447)
Q Consensus 397 ~~Gi~~~~~-------------------------------g~~iR~~~~~~~t~e~i~~~~~~l~~ 431 (447)
+.|+.+ .. .+.||+++...+++++|+.+.++|++
T Consensus 347 ~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 347 AIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp HCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred hCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 788886 32 25799999999999999999998864
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-21 Score=191.67 Aligned_cols=285 Identities=15% Similarity=0.103 Sum_probs=185.2
Q ss_pred CCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhh---cccCC
Q 013204 74 RTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAA---SLSGL 150 (447)
Q Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~---~~~~~ 150 (447)
...+...++++++++++. .+++++++||++|+..+++.+. .++++|++.++.||+...... ...|.
T Consensus 61 ~~~~~~~~l~~~la~~~g---~~~~i~~~sG~~a~~~~l~~~~--------~~gd~vi~~~~~~~~~~~~~~~~~~~~g~ 129 (398)
T 2rfv_A 61 LGNPTTDALEKKLAVLER---GEAGLATASGISAITTTLLTLC--------QQGDHIVSASAIYGCTHAFLSHSMPKFGI 129 (398)
T ss_dssp TCCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHHC--------CTTCEEEEESSSCHHHHHHHHTHHHHTTC
T ss_pred CCChHHHHHHHHHHHHhC---CCcEEEECCHHHHHHHHHHHHh--------CCCCEEEEcCCCcccHHHHHHHHHHHcCC
Confidence 367788899999999873 3478888999999999999763 334789999999988754331 11221
Q ss_pred ccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHH
Q 013204 151 PALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKV 230 (447)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l 230 (447)
. +..++.. +++++++.+. +++++|+++++++.+|.+.+ +++|
T Consensus 130 ~------------~~~v~~~------------------d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i 171 (398)
T 2rfv_A 130 N------------VRFVDAA------------------KPEEIRAAMR----PETKVVYIETPANPTLSLVD----IETV 171 (398)
T ss_dssp E------------EEEECTT------------------SHHHHHHHCC----TTEEEEEEESSBTTTTBCCC----HHHH
T ss_pred E------------EEEeCCC------------------CHHHHHHhcC----CCCeEEEEECCCCCCCcccC----HHHH
Confidence 1 1122221 1366776664 36788999999888888776 9999
Q ss_pred HHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCcccce-eEEEeChhHHH-HhhhccCCCCccC
Q 013204 231 QAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSAYMPI-GAILVSPEVSE-VIHSQSNTLGSFS 306 (447)
Q Consensus 231 ~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg~~~~-g~~~~~~~~~~-~~~~~~~~~~~~~ 306 (447)
.++|++||+++|+||+|+.+ ..+... .+ .+|++ +++|.+++++.|+ |++++++++++ .+.. +.
T Consensus 172 ~~l~~~~~~~li~De~~~~~-~~~~~~---~~--~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~-------~~ 238 (398)
T 2rfv_A 172 AGIAHQQGALLVVDNTFMSP-YCQQPL---QL--GADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFV-------GL 238 (398)
T ss_dssp HHHHHHTTCEEEEECTTTCT-TTCCGG---GG--TCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHT-------HH
T ss_pred HHHHHHcCCEEEEECCCccc-ccCCch---hh--CCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHH-------HH
Confidence 99999999999999999833 332221 12 35664 6789998755788 99999998876 4542 12
Q ss_pred cCC-CCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc-----------cCCCceee----EeeeeeEEEEE
Q 013204 307 HGF-TYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-----------SDSPIIGE----IRGTGLILGTE 370 (447)
Q Consensus 307 ~~~-t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l-----------~~~~~~~~----~~~~g~~~~i~ 370 (447)
... +.+.++++++++.++++.+. ...++..++.+.+.+.|++. ...+.+.. .++.|.++.++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~ 316 (398)
T 2rfv_A 239 KDITGGCMSPFNAWLTLRGVKTLG--IRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFE 316 (398)
T ss_dssp HHTTCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEE
T ss_pred HhCCCCCCCHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEE
Confidence 222 45678888888888886432 22344455555666655542 11111111 12457787887
Q ss_pred eecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee----------------------------CCEEEEecCCCCCHHHH
Q 013204 371 FADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS----------------------------GDNIMMSPPFIMSPEEV 422 (447)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----------------------------g~~iR~~~~~~~t~e~i 422 (447)
+.... .....+.+.+...|+.++++ .+.+|++++...++++|
T Consensus 317 ~~~~~----------~~~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i 386 (398)
T 2rfv_A 317 IAGGL----------EAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDII 386 (398)
T ss_dssp ETTHH----------HHHHHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHH
T ss_pred EcCCH----------HHHHHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHH
Confidence 75310 01222333333334443322 36799999999999999
Q ss_pred HHHHHHHHHH
Q 013204 423 DELISKYGKA 432 (447)
Q Consensus 423 ~~~~~~l~~~ 432 (447)
+++.++|+++
T Consensus 387 ~~l~~al~~~ 396 (398)
T 2rfv_A 387 NDLEHAIRKA 396 (398)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9998888753
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=9.7e-21 Score=189.32 Aligned_cols=333 Identities=13% Similarity=0.094 Sum_probs=206.1
Q ss_pred CCCCHHHHHHHHHHHhcCCcccc--cCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCC-
Q 013204 48 GGSEPRLVAAATAQLNTLPFYHS--FWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGR- 124 (447)
Q Consensus 48 G~~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~- 124 (447)
+|.+|++.+++.+....+..+.. ...+..+...++++++++++. .+ ..+++++||++|+..|+++++.+...+|+
T Consensus 76 ~~~~p~v~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g-~~-~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~ 153 (474)
T 1wyu_B 76 MKYNPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTG-MD-AITLEPAAGAHGELTGILIIRAYHEDRGEG 153 (474)
T ss_dssp CCCCCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHT-CS-EEECCCSSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred ccCCHHHHHHHHHHHHhcCCCCchhhChHHHHHHHHHHHHHHHHHC-CC-ceeecChHHHHHHHHHHHHHHHHHHhcCCc
Confidence 46779998888876322111100 011122456778888888763 22 24567899999999999988765444554
Q ss_pred CCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCc
Q 013204 125 PNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPET 204 (447)
Q Consensus 125 ~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~ 204 (447)
+++++||+.+ .+|+....+....|... ..+++...+. .++++|++.+. ++
T Consensus 154 ~~r~~Vlv~~-~~h~~~~~~~~~~G~~v------------v~v~~~~~~~-------------~d~~~L~~~i~----~~ 203 (474)
T 1wyu_B 154 RTRRVVLVPD-SAHGSNPATASMAGYQV------------REIPSGPEGE-------------VDLEALKRELG----PH 203 (474)
T ss_dssp TTCCEEEEET-TSCTHHHHHHHHTTCEE------------EEECBCTTSS-------------BCHHHHHHHCS----TT
T ss_pred cCCCEEEEeC-CcChhhHHHHHHCCCEE------------EEecCCCCCC-------------cCHHHHHHhhC----CC
Confidence 4456788776 56676655544433221 1222211110 01477777764 35
Q ss_pred EEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeee--cccCCC----c
Q 013204 205 IAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF--AKALSS----A 278 (447)
Q Consensus 205 ~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~--sK~l~g----g 278 (447)
+++|++++.++ .|.+. +.+++|.++|++||+++|+||+|..+ ..|.. ....+ .+|++++ +|.+++ |
T Consensus 204 t~~v~~~~pn~-~G~~~---~~l~~i~~l~~~~g~~li~Dea~~~~-~~g~~-~~~~~--g~di~~~s~~K~~~~p~g~g 275 (474)
T 1wyu_B 204 VAALMLTNPNT-LGLFE---RRILEISRLCKEAGVQLYYDGANLNA-IMGWA-RPGDM--GFDVVHLNLHKTFTVPHGGG 275 (474)
T ss_dssp EEEEEECSSCT-TSCCC---TTHHHHHHHHHHHTCEEEEEGGGGGG-TTTTC-CHHHH--TCSEEECCTTTTTCCCCTTS
T ss_pred ceEEEEECCCC-CcccC---CCHHHHHHHHHHcCCEEEEeCchhhh-hccCC-CcccC--CCcEEEEeCccccccCCCCC
Confidence 77888887654 66552 23999999999999999999999632 23311 11112 3788876 797753 3
Q ss_pred ccceeEEEeChhHHHHhhhc-----cC-------CCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcH---HHHHHHHHHH
Q 013204 279 YMPIGAILVSPEVSEVIHSQ-----SN-------TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNI---VEQVNKIAPK 343 (447)
Q Consensus 279 ~~~~g~~~~~~~~~~~~~~~-----~~-------~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~---~~~~~~~~~~ 343 (447)
++++|++++++++++.+... .. +........++++++++++++++.++.+..+.+ .++..++.++
T Consensus 276 G~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~ 355 (474)
T 1wyu_B 276 GPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARY 355 (474)
T ss_dssp CCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999987766410 00 000000112345678888888888875544444 6677788888
Q ss_pred HHHhHhhccCCCceeeEeeeeeE--EEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee------CCEEEEecCC
Q 013204 344 FQDGVKAFSDSPIIGEIRGTGLI--LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS------GDNIMMSPPF 415 (447)
Q Consensus 344 l~~~L~~l~~~~~~~~~~~~g~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------g~~iR~~~~~ 415 (447)
+.+.|+++ +..++. +.+.+ +.+.+.. . . ....+.++|+++||++... .+.+|++++.
T Consensus 356 l~~~L~~~-g~~~~~---~~~~~~~~~~~~~~-~-~---------~~~~l~~~L~~~Gi~~~~~~~~~~~~~~lRis~~~ 420 (474)
T 1wyu_B 356 LKELLKEK-GYRVPY---DGPSMHEFVAQPPE-G-F---------RALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTE 420 (474)
T ss_dssp HHHHHHHT-TCBCSS---CSSCCSCEEEBCST-T-C---------CHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCT
T ss_pred HHHHHhhc-CcEecC---CCCcceEEEEEcCC-C-C---------CHHHHHHHHHHCCccccccccccccCCEEEEEeec
Confidence 88888875 332211 11111 2233311 1 0 1456889999999985321 3579999998
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 013204 416 IMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 416 ~~t~e~i~~~~~~l~~~l~~ 435 (447)
.+|++++++++++|++++++
T Consensus 421 ~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 421 TEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp TSCHHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 88999999999999998865
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-22 Score=203.57 Aligned_cols=361 Identities=14% Similarity=0.034 Sum_probs=196.7
Q ss_pred ccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC----cCCCCeEEEeCChhhHHHHHHHHHHHHHH
Q 013204 45 TALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT----ASKMAKVFFTNSGSEANDTQVKLVWYYNN 120 (447)
Q Consensus 45 ~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~v~~~~sGseA~~~Al~~~~~~~~ 120 (447)
...++.+|++++++.+++....+ +....+..+....+++.+.+.+. ..+.+++++++||++|+..+++.+....
T Consensus 111 g~~~~~~~~~v~a~~~~~~~~~y-~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~- 188 (533)
T 3f6t_A 111 TELGLNRDKVVAEWVNGAVANNY-PVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENH- 188 (533)
T ss_dssp HTTCCCHHHHHHHHHHHHHTCSC-CSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTT-
T ss_pred CCCCcCCcHHHHHHHHHHHhCCC-CCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhh-
Confidence 34455689999988888864322 21223344555566666644411 1124699999999999999998632110
Q ss_pred hcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhh
Q 013204 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE 200 (447)
Q Consensus 121 ~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~ 200 (447)
.. .+++.|++.+++|++............ ..+++.... ..+ + ..++++|++.+.
T Consensus 189 -l~-~~gd~Viv~~p~~~~~~~~~~~~g~~~-------------~~v~~~~~~-----~~~---~-~~d~~~l~~~l~-- 242 (533)
T 3f6t_A 189 -LL-KKGDKIAINEPIFTPYLRIPELKDYEL-------------VEVDLHSYE-----KND---W-EIEPNEIEKLKD-- 242 (533)
T ss_dssp -SS-CTTCEEEEESSCCHHHHTSGGGGGSEE-------------EEECCCEET-----TTT---S-EECHHHHHHHSC--
T ss_pred -cc-CCcCEEEEcCCCcHHHHHHHHHcCCeE-------------EEEEecCCc-----ccC---C-CCCHHHHHHHhC--
Confidence 01 234789999999988754433322111 111111000 000 0 001366776653
Q ss_pred CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHH-hcCCEEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcc
Q 013204 201 GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVK-KYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAY 279 (447)
Q Consensus 201 ~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~-~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~ 279 (447)
+ ++++|+++..++.+| ...+.+.+++|.++|+ +||+++|+||+|.++...+........+....+.+|||.++..+
T Consensus 243 -~-~~k~v~l~~p~NPtG-~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 319 (533)
T 3f6t_A 243 -P-SIKALIVVNPTNPTS-KEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTG 319 (533)
T ss_dssp -T-TEEEEEEESSCTTTC-BCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGG
T ss_pred -C-CCeEEEEeCCCCCCc-cccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCcc
Confidence 3 455555544444455 4557788999999999 69999999999998754332221111122234457899987444
Q ss_pred cceeEEEeChh-----HHHHhhh--------c----cC-------------CCCccCcCCCCCCcHHHHHH----HHHHH
Q 013204 280 MPIGAILVSPE-----VSEVIHS--------Q----SN-------------TLGSFSHGFTYSGHPVSCAV----AIEAL 325 (447)
Q Consensus 280 ~~~g~~~~~~~-----~~~~~~~--------~----~~-------------~~~~~~~~~t~~~~~~~~~a----a~a~l 325 (447)
+|+|+++++++ +++.+.. . .. ..+......+.+.+++++.+ ++++|
T Consensus 320 ~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L 399 (533)
T 3f6t_A 320 WRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHL 399 (533)
T ss_dssp GCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHH
T ss_pred cceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHH
Confidence 89999999776 3332200 0 00 00112222344556665555 33333
Q ss_pred H------HH--hhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCC--CCCCCCC---CcchHHHHH
Q 013204 326 K------IY--KERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKS--PNEPFPP---EWGIGAYFG 392 (447)
Q Consensus 326 ~------~~--~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~--~~~~~~~---~~~~~~~~~ 392 (447)
. .. ..++..+.++++.+.+.+.|. + ++.......|.+..+++..... ....+.. .......+.
T Consensus 400 ~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~---~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~ 475 (533)
T 3f6t_A 400 LTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-A---PKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFL 475 (533)
T ss_dssp TTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-C---CCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHH
T ss_pred hhhccccchHHHHHHHHHHHHHHHHHHHHhcC-C---CccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHH
Confidence 2 00 012344556666666666665 3 2111112334455555542000 0000000 000022344
Q ss_pred HH-HHHcCceEEee------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 013204 393 AQ-CEKHGMLVRVS------GDNIMMSPPFIMSPEEVDELISKYGKALKATEERVK 441 (447)
Q Consensus 393 ~~-l~~~Gi~~~~~------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~~ 441 (447)
.+ +.++||++.++ .+.+|++.. .+++++|++++++|.+++++++++.+
T Consensus 476 ~~ll~~~GV~v~pg~~f~~~~~~iRls~a-~~~~e~i~~~i~~L~~~l~~~~~~~~ 530 (533)
T 3f6t_A 476 LKLAEKNGVVLVDGVGFGAKPGELRVSQA-NLPTEDYALIGKQVLELLKEYYEEFK 530 (533)
T ss_dssp HHHHHHTTSSSCTTEEECSSTTEEEEESS-SSCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCEEEeCCcccCCCCCEEEEEEe-eCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 45789998864 257999953 36999999999999999998876553
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-21 Score=194.19 Aligned_cols=339 Identities=9% Similarity=0.020 Sum_probs=194.4
Q ss_pred CCCE-EEecCCccccccCC-CCCHHHHHHHHHH---Hh----cCCcccccCcCCChHHHHHHHHHHHhcCcCC-----CC
Q 013204 31 NGKK-YLDSLAGLWCTALG-GSEPRLVAAATAQ---LN----TLPFYHSFWNRTTKPSLDLAKELLEMFTASK-----MA 96 (447)
Q Consensus 31 dg~~-~lD~~~~~~~~~lG-~~~p~v~~a~~~~---~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~ 96 (447)
|++. .+||..+. ++. .++|.+.+++.++ +. .....+. +.....++.+.+++++.... .+
T Consensus 46 ~~~~~~i~l~~g~---~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~----~~~G~~~lr~~ia~~l~g~~~~~~~~~ 118 (448)
T 3meb_A 46 DTNPKKVNLGVGA---YRDESGKPWILPAVKEAEAIISSDLSKYNKEYP----PVAGFPLFLEAAQFLMFGKDSKAAQEG 118 (448)
T ss_dssp CCCTTCEEESSCC---CCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCC----CTTCCHHHHHHHHHHHHCTTCHHHHTT
T ss_pred CCCCCeEEeeccc---ccCCCCCEechHHHHHHHHHHhhcccCCCCCCC----CCcchHHHHHHHHHHhcCCCccccCcC
Confidence 4443 68887763 322 2444445554444 22 1111111 22334566666666652223 57
Q ss_pred eEEE--eCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhh----cccCCccccCCCCCCCCcceecCCC
Q 013204 97 KVFF--TNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAA----SLSGLPALHQKFDLPAPFVLHTDCP 170 (447)
Q Consensus 97 ~v~~--~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (447)
++++ ++||++|+..++.+.... .+++.|++.+++|+++..... ..+... ..+++.
T Consensus 119 ~i~~~~t~ggt~al~l~~~~~~~~------~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v-------------~~~~~~ 179 (448)
T 3meb_A 119 RIASCQSLSGTGSLHIGFEFLHLW------MPKAEFYMPSTTWPNHYGIYDKVFNKLKVPY-------------KEYTYL 179 (448)
T ss_dssp CEEEEEESHHHHHHHHHHHHHHHH------CTTCCEEEESSCCTHHHHHHHHHHCTTTSCC-------------EEECCB
T ss_pred cEEEEECCcHHHHHHHHHHHHHHh------CCCCEEEECCCCCHhHHHHHHhhHHhCCCeE-------------EEEecc
Confidence 8999 999999999866543322 234789999999988754444 222111 111110
Q ss_pred Ccc-cCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcC
Q 013204 171 HYW-RYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA 249 (447)
Q Consensus 171 ~~~-~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g 249 (447)
+.. .+ . .+++++++.+....+ ...++++...++.+| ..++.+.+++|.++|++||+++|+||+|.+
T Consensus 180 ~~~~~~---~--------~d~e~l~~~l~~~~~-~~~~v~~~~p~NPtG-~~~~~~~l~~i~~l~~~~~~~li~Deay~~ 246 (448)
T 3meb_A 180 RKDGEL---E--------IDFSNTKKDIQSAPE-KSIFLFHACAHNPSG-IDFTEAQWKELLPIMKEKKHIAFFDSAYQG 246 (448)
T ss_dssp CTTSCS---S--------BCHHHHHHHHHHSCT-TCEEEEESSSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEEESCTT
T ss_pred ccccCC---C--------cCHHHHHHHHHhCCC-CcEEEEeCCCCCCCC-cCCCHHHHHHHHHHHHHCCCEEEEeccccc
Confidence 000 00 0 014778887765333 344545444444455 456788999999999999999999999998
Q ss_pred CCcccc---ccccccC-CCCCC---eeeecccCCCcccceeEE--Ee--------C-h----hHHHHhhhccCCCCccCc
Q 013204 250 FGRLGT---MFGCDKY-SIKPD---LVSFAKALSSAYMPIGAI--LV--------S-P----EVSEVIHSQSNTLGSFSH 307 (447)
Q Consensus 250 ~g~~g~---~~~~~~~-~~~~d---~v~~sK~l~gg~~~~g~~--~~--------~-~----~~~~~~~~~~~~~~~~~~ 307 (447)
|+..+. .+....+ +..++ +.++||.++..++++|++ ++ + + ++++.+.. ...
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~-------~~~ 319 (448)
T 3meb_A 247 FATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTL-------QIR 319 (448)
T ss_dssp TSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHH-------HHH
T ss_pred ccCCCcccCchhHHHHhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHH-------HHh
Confidence 876541 1222111 22345 336899998544899998 65 3 4 45555432 112
Q ss_pred CCCCCCcHHHHHHHHHHHHHHh--------hhcHHHHHHHHHHHHHHhHhhccCCCc------eeeEeeeee-EEEEEee
Q 013204 308 GFTYSGHPVSCAVAIEALKIYK--------ERNIVEQVNKIAPKFQDGVKAFSDSPI------IGEIRGTGL-ILGTEFA 372 (447)
Q Consensus 308 ~~t~~~~~~~~~aa~a~l~~~~--------~~~~~~~~~~~~~~l~~~L~~l~~~~~------~~~~~~~g~-~~~i~~~ 372 (447)
..+...+.+++.++.++|+... -++..++++++++++.+.|+++ ..+. .......+. +..+.+.
T Consensus 320 ~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~ 398 (448)
T 3meb_A 320 KTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKR-KTPGPGSKGTWDHILTAIGMFTFTGLT 398 (448)
T ss_dssp TTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCSTTTCCCTHHHHCCSSEEECCCC
T ss_pred cccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCcCcccccceeCCCceEEEecCCC
Confidence 2344556677777766654211 1344567777778888888765 1111 111122232 3222221
Q ss_pred cCCCCCCCCCCCcchHHHHHHHH-HHcCceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 373 DNKSPNEPFPPEWGIGAYFGAQC-EKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
. .+...+ .++||++.++.. ||+.. ..++++|++++++|++++++
T Consensus 399 ---------------~-~~~~~ll~~~gV~v~~G~g--Ris~a-~~~~~~i~~~~~~l~~~l~~ 443 (448)
T 3meb_A 399 ---------------P-EHVDYLKEKWSIYLVKAGG--RMSMC-GLTESNCDYVAEAIHDAVTK 443 (448)
T ss_dssp ---------------H-HHHHHHHHHHCEEECSGGG--EEEGG-GCCTTTHHHHHHHHHHHHHH
T ss_pred ---------------H-HHHHHHHHhCCEEEeCCCc--EEEEe-cCCHHHHHHHHHHHHHHHHh
Confidence 1 244444 567999988532 88853 34788899999999999873
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.88 E-value=4e-20 Score=185.98 Aligned_cols=344 Identities=13% Similarity=0.083 Sum_probs=205.3
Q ss_pred CCHHHHHHHHHHHhcCC----cccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCC
Q 013204 50 SEPRLVAAATAQLNTLP----FYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGR 124 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~ 124 (447)
.++++++++.+.+.... ..++...+..+....+++.+.+.+. +.+++++++++||++|+..+++.+. .
T Consensus 107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-------~ 179 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLI-------R 179 (500)
T ss_dssp SCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHC-------C
T ss_pred CCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHc-------C
Confidence 46678888888776632 1222222333444455555544432 2467899999999999999999762 0
Q ss_pred CCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhh--CC
Q 013204 125 PNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE--GP 202 (447)
Q Consensus 125 ~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~ 202 (447)
..++.|++.++.|+++.......+.... .+++.....+ . .++++|++.+... ..
T Consensus 180 ~~gd~Vlv~~p~y~~~~~~~~~~g~~~~-------------~~~~~~~~~~---~--------~d~~~l~~~l~~~~~~~ 235 (500)
T 3tcm_A 180 NEKDGILVPIPQYPLYSASIALHGGALV-------------PYYLNESTGW---G--------LETSDVKKQLEDARSRG 235 (500)
T ss_dssp STTEEEEEEESCCTHHHHHHHHTTCEEE-------------EEECBTTTTS---B--------CCHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCcHhHHHHHHHcCCEEE-------------EEecccccCC---C--------CCHHHHHHHHHHHHhcC
Confidence 1347899999999887655444332111 1111100000 0 0147788777642 11
Q ss_pred CcEEE-EEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc-cc-cc----ccCCC-C--CC-ee--
Q 013204 203 ETIAA-FIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT-MF-GC----DKYSI-K--PD-LV-- 269 (447)
Q Consensus 203 ~~~a~-vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~-~~-~~----~~~~~-~--~d-~v-- 269 (447)
.++++ +++.| ++.+| .+.+.+.+++|.++|++||+++|+||+|.++...+. .+ .+ ..++. . .+ ++
T Consensus 236 ~~~k~ivl~~p-~NPtG-~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~ 313 (500)
T 3tcm_A 236 INVRALVVINP-GNPTG-QVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQ 313 (500)
T ss_dssp CEEEEEEEESS-CTTTC-CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEE
T ss_pred CCceEEEEECC-CCCCc-ccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEe
Confidence 24444 45555 44455 455788899999999999999999999997644321 11 11 11221 1 22 33
Q ss_pred eecccC-CCcccceeEEEe---ChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHH-----------HHh-hhcH
Q 013204 270 SFAKAL-SSAYMPIGAILV---SPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALK-----------IYK-ERNI 333 (447)
Q Consensus 270 ~~sK~l-~gg~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~-----------~~~-~~~~ 333 (447)
++||++ +..++++|++++ ++++++.+... . ..+++.++++++++..+++ ..+ .+.+
T Consensus 314 S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~-------~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 385 (500)
T 3tcm_A 314 SVSKGYYGECGKRGGYFEITGFSAPVREQIYKI-------A-SVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGI 385 (500)
T ss_dssp ESSSTTTCCGGGCCEEEEEESCCTTHHHHHHHH-------H-HTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHH
T ss_pred cCCccCCCCCccceEEEEEeCCCHHHHHHHHHH-------H-hcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHH
Confidence 689998 433389999998 88888887632 1 1245567777777766664 222 2445
Q ss_pred HHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEE-EEEeecCCCCCC--CCCCCcchHHHH-HHHHHHcCceEEeeC---
Q 013204 334 VEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLIL-GTEFADNKSPNE--PFPPEWGIGAYF-GAQCEKHGMLVRVSG--- 406 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~-~i~~~~~~~~~~--~~~~~~~~~~~~-~~~l~~~Gi~~~~~g--- 406 (447)
.++++++.+.+.+.|+++ +.+......|.++ .+.+..+..... ..... .....+ .+.|.++||++.++.
T Consensus 386 ~~~l~~~~~~l~~~L~~~---~g~~~~~~~g~~~~~~~~~lp~~~~~~~~~~g~-~~~~~~~~~ll~~~gI~v~pg~~f~ 461 (500)
T 3tcm_A 386 LASLARRAKALEHAFNKL---EGITCNEAEGAMYVFPQICLPQKAIEAAKAANK-APDAFYALRLLESTGIVVVPGSGFG 461 (500)
T ss_dssp HHHHHHHHHHHHHHHHTS---TTEECCCCCBTTEECCEECCCHHHHHHHHHHTS-CHHHHHHHHHHHHHCEECEESTTTC
T ss_pred HHHHHHHHHHHHHHHhcC---CCcEEecCCeEEEEeeeecCchhhHHHHHhcCC-CcHHHHHHHHHHHCCEEEEeCcccC
Confidence 677777888888888765 3333344455433 322321100000 00000 001222 355667899998752
Q ss_pred -----CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 013204 407 -----DNIMMSPPFIMSPEEVDELISKYGKALKATEERV 440 (447)
Q Consensus 407 -----~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~ 440 (447)
..+|++.. +++++|++++++|.++++++.++.
T Consensus 462 ~~~g~~~iRis~~--~~~e~i~~~i~~l~~~~~~~~~~~ 498 (500)
T 3tcm_A 462 QVPGTWHFRCTIL--PQEDKIPAVISRFTVFHEAFMSEY 498 (500)
T ss_dssp CCTTCCBEEEESC--SCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHHHHHHHh
Confidence 35999955 899999999999999999887764
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-20 Score=183.34 Aligned_cols=282 Identities=12% Similarity=0.061 Sum_probs=186.2
Q ss_pred CCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhc---ccCC
Q 013204 74 RTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAAS---LSGL 150 (447)
Q Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~---~~~~ 150 (447)
...+...++++++++++. .+++++++||++|+..+++.+. .++++|++.++.||+....... ..+.
T Consensus 62 ~~~~~~~~l~~~la~~~g---~~~~i~~~sG~~a~~~~l~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~~~g~ 130 (398)
T 1gc0_A 62 ISNPTLNLLEARMASLEG---GEAGLALASGMGAITSTLWTLL--------RPGDEVLLGNTLYGCTFAFLHHGIGEFGV 130 (398)
T ss_dssp -CCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHHC--------CTTCEEEEESSCCSHHHHHHHHTGGGGTC
T ss_pred CCChHHHHHHHHHHHHhC---CCcEEEECCHHHHHHHHHHHHh--------cCCCEEEEeCCCchhHHHHHHHHHHHcCC
Confidence 367788899999999873 3478889999999999999763 3347899999999987543321 1111
Q ss_pred ccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHH
Q 013204 151 PALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKV 230 (447)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l 230 (447)
. +..++.. +++++++.+. +++++|+++++++.+|.+.+ +++|
T Consensus 131 ~------------~~~~~~~------------------d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i 172 (398)
T 1gc0_A 131 K------------LRHVDMA------------------DLQALEAAMT----PATRVIYFESPANPNMHMAD----IAGV 172 (398)
T ss_dssp E------------EEEECTT------------------CHHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHH
T ss_pred E------------EEEECCC------------------CHHHHHHhcC----CCCeEEEEECCCCCCccccc----HHHH
Confidence 1 1112211 1366776664 36789999999888888876 9999
Q ss_pred HHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCcccce-eEEEeChhHHH-HhhhccCCCCccC
Q 013204 231 QAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSAYMPI-GAILVSPEVSE-VIHSQSNTLGSFS 306 (447)
Q Consensus 231 ~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg~~~~-g~~~~~~~~~~-~~~~~~~~~~~~~ 306 (447)
.++|++||+++|+||+|+.+ ..+... .++ .|++ +++|.+++++.++ |+++++++.++ .+.. ..
T Consensus 173 ~~l~~~~~~~li~D~~~~~~-~~~~~~---~~~--~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~-------~~ 239 (398)
T 1gc0_A 173 AKIARKHGATVVVDNTYCTP-YLQRPL---ELG--ADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQ-------GL 239 (398)
T ss_dssp HHHHGGGTCEEEEECTTTHH-HHCCGG---GGT--CSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHT-------HH
T ss_pred HHHHHHcCCEEEEECCCccc-ccCCch---hhC--ceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHH-------Hh
Confidence 99999999999999999733 322221 123 4655 6789999865777 88889988665 4431 12
Q ss_pred cC-CCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccC-----CC---------cee-eEeeeeeEEEEE
Q 013204 307 HG-FTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD-----SP---------IIG-EIRGTGLILGTE 370 (447)
Q Consensus 307 ~~-~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~-----~~---------~~~-~~~~~g~~~~i~ 370 (447)
.. .+...++++++++.++++.+ +...++..++.+.+.+.|+++.. ++ +.. ..++.|.++.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 317 (398)
T 1gc0_A 240 KDMTGAVLSPHDAALLMRGIKTL--NLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFE 317 (398)
T ss_dssp HHHTCCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEE
T ss_pred hccCCCCCCHHHHHHHHhccchH--HHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEE
Confidence 22 24556888888877777643 23345556666666666655311 01 000 012456777776
Q ss_pred eecCCCCCCCCCCCcchHHHHHHHHHHcCceEEe---e----------------------------CCEEEEecCCCCCH
Q 013204 371 FADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV---S----------------------------GDNIMMSPPFIMSP 419 (447)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~---~----------------------------g~~iR~~~~~~~t~ 419 (447)
+... .....+.+.+.|+.... + .+.||+++.+..++
T Consensus 318 l~~~-------------~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~ 384 (398)
T 1gc0_A 318 LKGG-------------IGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDID 384 (398)
T ss_dssp ETTH-------------HHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHH
T ss_pred ECCC-------------HHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHH
Confidence 6421 12345566677776643 1 25799999999999
Q ss_pred HHHHHHHHHHHHH
Q 013204 420 EEVDELISKYGKA 432 (447)
Q Consensus 420 e~i~~~~~~l~~~ 432 (447)
++|+.+.++|+++
T Consensus 385 ~~i~~l~~al~~~ 397 (398)
T 1gc0_A 385 DLLADVQQALKAS 397 (398)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988764
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-21 Score=193.87 Aligned_cols=336 Identities=14% Similarity=0.092 Sum_probs=202.2
Q ss_pred CCHHHHHHHHHHHhcCCcccc----cCcCCChHHHHHHHHHHHhcCcC-CCCeEEEeCChhhHHHHHHHHHHHHHHh-cC
Q 013204 50 SEPRLVAAATAQLNTLPFYHS----FWNRTTKPSLDLAKELLEMFTAS-KMAKVFFTNSGSEANDTQVKLVWYYNNA-LG 123 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~-~~~~v~~~~sGseA~~~Al~~~~~~~~~-~~ 123 (447)
+++.+.+++.+++........ .+.+..+...++.+++++++... +.+.+++++||++|+..+++.++.+... .|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g 155 (497)
T 3mc6_A 76 GGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRG 155 (497)
T ss_dssp CCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSC
T ss_pred CchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCC
Confidence 568899999888876322111 11112233446667777776432 3568999999999999999988765332 22
Q ss_pred CCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC-cccCCCCCCChhHHHHHHHHHHHHHHHhhCC
Q 013204 124 RPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH-YWRYAHPGETEEEYSTRLANNLEDLILKEGP 202 (447)
Q Consensus 124 ~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~ 202 (447)
. .++.|++..+.|... ..+....|... ..+++.. .++.+ +++|++.+.
T Consensus 156 ~-~~~~Vi~~~~~h~~~-~~~~~~~G~~~------------~~v~~~~~~~~~d-------------~~~l~~~i~---- 204 (497)
T 3mc6_A 156 I-TEPEIIAPVTAHAGF-DKAAYYFGMKL------------RHVELDPTTYQVD-------------LGKVKKFIN---- 204 (497)
T ss_dssp C-SSCEEEEETTSCHHH-HHHHHHSCCEE------------EEECBCTTTCSBC-------------TTTTGGGCC----
T ss_pred C-CCceEEEeCCccHHH-HHHHHHcCCeE------------EEEecCcccCcCC-------------HHHHHHHHh----
Confidence 1 235677766655444 33333333221 1222211 11100 255555553
Q ss_pred CcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcc-----cc----ccccccCCCCCCeeeec-
Q 013204 203 ETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRL-----GT----MFGCDKYSIKPDLVSFA- 272 (447)
Q Consensus 203 ~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~-----g~----~~~~~~~~~~~d~v~~s- 272 (447)
+++++|+++..++.+|.+.+ +++|+++|++||+++|+||+|+++.+. |. .+.....+ .|+++++
T Consensus 205 ~~~~~v~~~~p~nptG~~~~----l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g--~d~~~~s~ 278 (497)
T 3mc6_A 205 KNTVLLVGSAPNFPHGIADD----IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPG--VTSISCDT 278 (497)
T ss_dssp SSEEEEEEETTCTTTCCCCS----CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTT--CCEEEEET
T ss_pred hCCEEEEEECCCCCCCcCCC----HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCC--CcEEEECc
Confidence 35788888888888887766 889999999999999999999865332 11 12222333 4777654
Q ss_pred -ccCCCcccceeEEEeChhHHHHhhhcc--CCCCccCcCCCC--CCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHH
Q 013204 273 -KALSSAYMPIGAILVSPEVSEVIHSQS--NTLGSFSHGFTY--SGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKF 344 (447)
Q Consensus 273 -K~l~gg~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~t~--~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l 344 (447)
|.+.++ .++|+++++++.+....... ...+......++ +.....+++..++++.+.. ++..++..++.+++
T Consensus 279 ~K~l~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l 357 (497)
T 3mc6_A 279 HKYGFAP-KGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKF 357 (497)
T ss_dssp TTTTCCC-SSCEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCC-CCceeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 877666 78999999877654432100 000000000011 1122234444455555443 34556777788888
Q ss_pred HHhHhh-ccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC--CEEEEecCCCCCHHH
Q 013204 345 QDGVKA-FSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--DNIMMSPPFIMSPEE 421 (447)
Q Consensus 345 ~~~L~~-l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g--~~iR~~~~~~~t~e~ 421 (447)
++.|++ +++..++. ...+.++.+..... ....+.+.|.++||.+.... ..+|++++ .+|+++
T Consensus 358 ~~~L~~~~~g~~~~~--~~~~~~v~~~~~~~------------~~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~-~~t~e~ 422 (497)
T 3mc6_A 358 KKYIQENIPDLDIMG--NPRYSVISFSSKTL------------NIHELSDRLSKKGWHFNALQKPVALHMAFT-RLSAHV 422 (497)
T ss_dssp HHHHHHSCTTCEECS--CCCSSEEEEECTTT------------THHHHHHHHHTTTCBCEECCSSCCEEEECC-TTTTCT
T ss_pred HHHHHhcCCCEEEec--CCCeeEEEEeCCCC------------CHHHHHHHHHhCCEEEecCCCCCeEEEEEe-CCCHHH
Confidence 888887 44333221 23444444432211 14568899999999887653 45899988 789999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013204 422 VDELISKYGKALKATEE 438 (447)
Q Consensus 422 i~~~~~~l~~~l~~~~~ 438 (447)
+++++++|+++++++++
T Consensus 423 i~~~~~~L~~~l~~~~~ 439 (497)
T 3mc6_A 423 VDEICDILRTTVQELKS 439 (497)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999988753
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.2e-21 Score=182.93 Aligned_cols=331 Identities=14% Similarity=0.078 Sum_probs=201.3
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHH
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQV 112 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al 112 (447)
.+++||+++.. + . .+|++++++.+.... ... ..+.+...++++++++++ +.+.+++++||++|+..++
T Consensus 3 ~~~i~~~~~~~--~-~-p~~~~~~a~~~~~~~-~~~----y~~~~~~~~l~~~la~~~---g~~~~~~~~~gt~a~~~~~ 70 (347)
T 1jg8_A 3 HMMIDLRSDTV--T-K-PTEEMRKAMAQAEVG-DDV----YGEDPTINELERLAAETF---GKEAALFVPSGTMGNQVSI 70 (347)
T ss_dssp --CEECSCGGG--C-C-CCHHHHHHHHTCCCC-CGG----GTCCHHHHHHHHHHHHHH---TCSEEEEESCHHHHHHHHH
T ss_pred ceEEEeccccC--C-C-CCHHHHHHHhcCCCC-Ccc----cCCChHHHHHHHHHHHHh---CCceEEEecCcHHHHHHHH
Confidence 46789987753 2 2 568888887654321 111 224566778999999987 3457899999999999998
Q ss_pred HHHHHHHHhcCCCCcceEEEEcCCCccchh-h-hhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHH
Q 013204 113 KLVWYYNNALGRPNKKKFIARQKSYHGSTL-I-AASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190 (447)
Q Consensus 113 ~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (447)
+.+. ..+++|++.+++|..... . .....|.... .+ .+..+. .++
T Consensus 71 ~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~------------~v-~~~~~~-------------~d~ 116 (347)
T 1jg8_A 71 MAHT--------QRGDEVILEADSHIFWYEVGAMAVLSGVMPH------------PV-PGKNGA-------------MDP 116 (347)
T ss_dssp HHHC--------CTTCEEEEETTCHHHHSSTTHHHHHTCCEEE------------EE-CEETTE-------------ECH
T ss_pred HHhc--------CCCCEEEEcCcchhhhccccchhhccCeEEE------------Ee-cCCCCc-------------cCH
Confidence 7653 234788888877644221 1 1111221110 01 000000 013
Q ss_pred HHHHHHHHhhC--CCcEEEEEEccccCCC-CCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc---cccccccccCCC
Q 013204 191 NNLEDLILKEG--PETIAAFIAEPVIGAG-GVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR---LGTMFGCDKYSI 264 (447)
Q Consensus 191 ~~le~~l~~~~--~~~~a~vi~epv~~~~-G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~---~g~~~~~~~~~~ 264 (447)
+++++.+.... .+++++|+++++++.+ | ...+.+.+++|.++|++||+++|+||+|. ++. .+.. ......
T Consensus 117 ~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G-~~~~~~~l~~i~~~a~~~~~~li~D~a~~-~~~~~~~~~~--~~~~~~ 192 (347)
T 1jg8_A 117 DDVRKAIRPRNIHFPRTSLIAIENTHNRSGG-RVVPLENIKEICTIAKEHGINVHIDGARI-FNASIASGVP--VKEYAG 192 (347)
T ss_dssp HHHHHHSCCSCTTSCCEEEEEEESSBTTTTS-BCCCHHHHHHHHHHHHHHTCEEEEEETTH-HHHHHHHCCC--HHHHHH
T ss_pred HHHHHHhccccccccCceEEEEeccccccCC-ccCcHHHHHHHHHHHHHCCCEEEeehhhh-hcchhhcCCC--hHHhcc
Confidence 77777664210 1257788888877666 6 55677889999999999999999999874 211 1111 111111
Q ss_pred CCCe--eeecccCCCccccee-EEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 013204 265 KPDL--VSFAKALSSAYMPIG-AILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIA 341 (447)
Q Consensus 265 ~~d~--v~~sK~l~gg~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~ 341 (447)
..|. +++||.+++ |+| ++++++++++.+.... . ..+.+...+.+.++++.++++... +. .++..++.
T Consensus 193 ~~d~~~~s~sK~l~~---~~G~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~~~~~~ 262 (347)
T 1jg8_A 193 YADSVMFCLSKGLCA---PVGSVVVGDRDFIERARKAR----K-MLGGGMRQAGVLAAAGIIALTKMV-DR-LKEDHENA 262 (347)
T ss_dssp TCSEEEEESSSTTCC---SSCEEEEECHHHHHHHHHHH----H-HHTCCCSSTHHHHHHHHHHHHHSS-TT-HHHHHHHH
T ss_pred cccEEEEecccccCC---CceEEEEcCHHHHHHHHHHH----H-HcCCchhHHHHHHHHHHHHHHHHH-HH-HHHHHHHH
Confidence 2343 358999975 356 5667888877654211 0 112233345566666666666421 22 33344566
Q ss_pred HHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEEEecCCCCCHH
Q 013204 342 PKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIMMSPPFIMSPE 420 (447)
Q Consensus 342 ~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR~~~~~~~t~e 420 (447)
+++++.|+++ +..+. .....+.++.+.+..... ....+.+.|+++||.+.+.+ +.+|++++..++++
T Consensus 263 ~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~gi~v~~~~~~~iRl~~~~~~~~e 330 (347)
T 1jg8_A 263 RFLALKLKEI-GYSVN-PEDVKTNMVILRTDNLKV----------NAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRN 330 (347)
T ss_dssp HHHHHHHHHH-TCBCC-GGGCCSSEEEEECTTSSS----------CHHHHHHHHHHHTEECEEEETTEEEEECCTTSCHH
T ss_pred HHHHHHHHhc-Cceec-cCCCcceEEEEEcccccC----------CHHHHHHHHHHCCCEEecCCCCeEEEEeCCCCCHH
Confidence 7788888776 32221 112345566666642110 14568888999999998875 67999998889999
Q ss_pred HHHHHHHHHHHHHHH
Q 013204 421 EVDELISKYGKALKA 435 (447)
Q Consensus 421 ~i~~~~~~l~~~l~~ 435 (447)
++++++++|++++++
T Consensus 331 ~i~~~~~~l~~~l~~ 345 (347)
T 1jg8_A 331 DIEEALNIFEKLFRK 345 (347)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998764
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-21 Score=192.90 Aligned_cols=336 Identities=12% Similarity=0.067 Sum_probs=199.5
Q ss_pred CCEEEecCCccccccCC-CCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCC-----CCeEEE--eCC
Q 013204 32 GKKYLDSLAGLWCTALG-GSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASK-----MAKVFF--TNS 103 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~v~~--~~s 103 (447)
...++||+.+. +++ ..+|.+.+++.++.......+. +.....++.+.+++++.... .+++.+ +.+
T Consensus 40 ~~~~i~l~~g~---~~d~~~~~~v~~a~~~a~~~~~~~y~----~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~ 112 (409)
T 4eu1_A 40 AKRKVNLSIGV---YRDDADQPFVLECVKQATLGTNMDYA----PVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLG 112 (409)
T ss_dssp CSSCEECCCSS---CCCTTSCCCCCHHHHTCCCCSCCCCC----CTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESH
T ss_pred CcCceeeeeeE---EECCCCCEeecHHHHhcCccccccCC----CCCCcHHHHHHHHHHHcCCCchhhccCceeeeeccc
Confidence 34689998773 323 3678888888877332222211 22334566677776652222 456744 899
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChh
Q 013204 104 GSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEE 183 (447)
Q Consensus 104 GseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (447)
|++|++.+..+++.. . .+++.|++.+|+|++........+.... .++..+... .
T Consensus 113 g~ga~~~~~~~~~~~----~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~-------------~~~~~~~~~-----~--- 166 (409)
T 4eu1_A 113 GTGALRIGGDLLNRF----V-ANCNRIYGPDVGYPNHESIFAKAGMELT-------------PYSYYDPAT-----K--- 166 (409)
T ss_dssp HHHHHHHHHHHGGGT----S-SSCCEEEEESSCCTHHHHHHHHTTCEEE-------------EECCEETTT-----T---
T ss_pred chHHHHHHHHHHHHh----c-CCCCEEEEeCCCcHhHHHHHHHcCCeEE-------------EEEeecCcC-----C---
Confidence 999999887655322 1 2347899999999887654443222111 111100000 0
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEE-EccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc---cccc
Q 013204 184 EYSTRLANNLEDLILKEGPETIAAFI-AEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT---MFGC 259 (447)
Q Consensus 184 ~~~~~~~~~le~~l~~~~~~~~a~vi-~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~---~~~~ 259 (447)
..+++++++.+....+ ..++++ .+|.|++ | ..++.+.+++|.++|++||+++|+||+|.+++..+. ....
T Consensus 167 ---~~d~~~l~~~l~~~~~-~~~~i~~~~p~NPt-G-~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~ 240 (409)
T 4eu1_A 167 ---GLNLAGMLECLDKAPE-GSVILVHACAHNPT-G-VDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVP 240 (409)
T ss_dssp ---EECHHHHHHHHHHSCT-TCEEEEESSSCTTT-C-CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHH
T ss_pred ---cCcHHHHHHHHHhCCC-CcEEEEECCCCCCC-C-CCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHH
Confidence 0014778888765332 344555 4555554 4 456788899999999999999999999998876541 1221
Q ss_pred -ccCCCCCCee---eecccCCCcccceeEE---EeChh----HHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHH
Q 013204 260 -DKYSIKPDLV---SFAKALSSAYMPIGAI---LVSPE----VSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIY 328 (447)
Q Consensus 260 -~~~~~~~d~v---~~sK~l~gg~~~~g~~---~~~~~----~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~ 328 (447)
...+..++++ ++||.++..++++|++ +++++ +++.+.. .....+++.+++++.++.++|+..
T Consensus 241 ~~~~~~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~ 313 (409)
T 4eu1_A 241 RHLVDMVPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLAL-------LIRPMYNNPPLYGAWVVSSILKDP 313 (409)
T ss_dssp HHHHTTSSCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHH-------HHHHHHSSCCHHHHHHHHHHHHCH
T ss_pred HHHHhhCCcEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHH-------HHhhhcCCCChHHHHHHHHHhCCH
Confidence 1223445544 6899998544899996 56677 5554432 111234455677877777777621
Q ss_pred --------hhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEE-EeecCCCCCCCCCCCcchHHHHHHHHH-Hc
Q 013204 329 --------KERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGT-EFADNKSPNEPFPPEWGIGAYFGAQCE-KH 398 (447)
Q Consensus 329 --------~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~ 398 (447)
..++..++++++.+++.+.|+++.....+......+.++.+ .+. . .+...++ ++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~---------------~-~~~~~ll~~~ 377 (409)
T 4eu1_A 314 QLTALWKKELKQMSSRIAEVRKRLVSELKACGSVHDWSHIERQVGMMAYTGLT---------------R-EQVELLRSEY 377 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHSCSSEEECCCC---------------H-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecCCceEEEEeCCC---------------H-HHHHHHHHcC
Confidence 12345667777888888888775110001112233333222 111 1 2345555 67
Q ss_pred CceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 399 GMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 399 Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
||++.+++ |++.. ..++++|++++++|++++
T Consensus 378 gv~v~p~~---Ri~~~-~~~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 378 HIYMTLNG---RAAVS-GLNSTNVEYVSQAIHNVT 408 (409)
T ss_dssp CEECCTTC---EEEGG-GCCTTTHHHHHHHHHHHH
T ss_pred CEEEcCCC---EEEEE-ecCHhhHHHHHHHHHHHh
Confidence 99998753 77754 467788999999998875
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-20 Score=183.46 Aligned_cols=279 Identities=13% Similarity=0.109 Sum_probs=183.3
Q ss_pred CCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhh---cccCC
Q 013204 74 RTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAA---SLSGL 150 (447)
Q Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~---~~~~~ 150 (447)
...+...++++++++++ +.+++++++||++|++.+++.+. .++++|++.++.||+...... ...+.
T Consensus 63 ~~~~~~~~l~~~la~~~---g~~~~~~~~sGt~A~~~al~~~~--------~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~ 131 (392)
T 3qhx_A 63 TGNPTRTALEAALAAVE---DAAFGRAFSSGMAAADCALRAML--------RPGDHVVIPDDAYGGTFRLIDKVFTGWNV 131 (392)
T ss_dssp TCCHHHHHHHHHHHHHT---TCSEEEEESSHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHHHTGGGGTC
T ss_pred CCChHHHHHHHHHHHHh---CCCcEEEECCHHHHHHHHHHHHh--------CCCCEEEEeCCCcchHHHHHHHHHHhcCc
Confidence 35677888999999986 34589999999999999999763 345789999999988643321 11111
Q ss_pred ccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHH
Q 013204 151 PALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKV 230 (447)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l 230 (447)
. +..++.. +++++++.+. +++++|++|++++.+|.+.+ +++|
T Consensus 132 ~------------~~~v~~~------------------d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i 173 (392)
T 3qhx_A 132 E------------YTPVALA------------------DLDAVRAAIR----PTTRLIWVETPTNPLLSIAD----IAGI 173 (392)
T ss_dssp E------------EEEECTT------------------CHHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHH
T ss_pred E------------EEEeCCC------------------CHHHHHHhhC----CCCeEEEEECCCCCCcEEec----HHHH
Confidence 1 1122221 1367777664 46888999999888888876 9999
Q ss_pred HHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCcc-cceeEEEeC-hhHHHHhhhccCCCCccC
Q 013204 231 QAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSAY-MPIGAILVS-PEVSEVIHSQSNTLGSFS 306 (447)
Q Consensus 231 ~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg~-~~~g~~~~~-~~~~~~~~~~~~~~~~~~ 306 (447)
+++|++||+++|+||+|+.+ .. ....+..+|+++ ++|.+++++ .++|+++.+ +++++.+... .
T Consensus 174 ~~la~~~g~~li~D~~~~~~-~~-----~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~-------~ 240 (392)
T 3qhx_A 174 AQLGADSSAKVLVDNTFASP-AL-----QQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFL-------Q 240 (392)
T ss_dssp HHHHHHHTCEEEEECTTTCT-TT-----CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHH-------H
T ss_pred HHHHHHcCCEEEEECCCccc-cc-----CChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHH-------H
Confidence 99999999999999999732 21 222344578887 789998754 578999987 5777776532 2
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeE------------------eeeeeEEE
Q 013204 307 HGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI------------------RGTGLILG 368 (447)
Q Consensus 307 ~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------------------~~~g~~~~ 368 (447)
+..++..+++.+++++..++.+. ...++..++.+++.+.|++. +.+..+ ++.|.++.
T Consensus 241 ~~~g~~~~~~~~~~~~~~l~~l~--~~~~~~~~~~~~l~~~L~~~---~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~ 315 (392)
T 3qhx_A 241 NGAGAVPGPFDAYLTMRGLKTLV--LRMQRHSENAAAVAEFLAEH---PAISTVLYPGLPSHPGHAVAARQMRGFGGMVS 315 (392)
T ss_dssp HHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTC---TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEE
T ss_pred HhcCCCCCHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHHHHhcC---CCcceEECCCCCCCCCHHHHHHhCCCCceEEE
Confidence 22355677888887777766432 22455566666666666654 222222 45688889
Q ss_pred EEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-------------------------CCEEEEecCCCCCHHHHH
Q 013204 369 TEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-------------------------GDNIMMSPPFIMSPEEVD 423 (447)
Q Consensus 369 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------------------------g~~iR~~~~~~~t~e~i~ 423 (447)
+.+.... .....+...|...|+.++.+ .+.||++.....+++.|+
T Consensus 316 ~~l~~~~----------~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~ 385 (392)
T 3qhx_A 316 VRMRAGR----------TAAEQLCAKTNIFILAESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLD 385 (392)
T ss_dssp EEETTCH----------HHHHHHHHHCSSSEECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHH
T ss_pred EEeCCcH----------HHHHHHHHhCCCceECCCCCCCCceeeCcccccccccCHHHcCCCCCeEEEEeccCCHHHHHH
Confidence 9886421 02344555554444443321 245899976666666666
Q ss_pred HHHHHH
Q 013204 424 ELISKY 429 (447)
Q Consensus 424 ~~~~~l 429 (447)
.+.++|
T Consensus 386 ~l~~al 391 (392)
T 3qhx_A 386 DLKQAL 391 (392)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 655554
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-19 Score=177.61 Aligned_cols=325 Identities=9% Similarity=0.065 Sum_probs=201.7
Q ss_pred ccCCCCCHHHHHHHHHHHhcCCcccccCcCC-ChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcC
Q 013204 45 TALGGSEPRLVAAATAQLNTLPFYHSFWNRT-TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALG 123 (447)
Q Consensus 45 ~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~ 123 (447)
..++ .+|++.+++.+.+.... + .. .....++++.+++++ +.+++++++||++|++.+++.+.
T Consensus 26 p~~~-~p~~~~~a~~~~~~~~~-y-----~~~~~~~~~l~~~la~~~---~~~~v~~~~ggt~al~~~l~~l~------- 88 (424)
T 2po3_A 26 PNRI-DRARLYERLDRALDSQW-L-----SNGGPLVREFEERVAGLA---GVRHAVATCNATAGLQLLAHAAG------- 88 (424)
T ss_dssp CCCC-CHHHHHHHHHHHHHHTC-C-----SSSCHHHHHHHHHHHHHH---TSSEEEEESCHHHHHHHHHHHHT-------
T ss_pred CCCC-ChHHHHHHHHHHHhcCC-c-----ccCCHHHHHHHHHHHHHh---CCCeEEEeCCHHHHHHHHHHHcC-------
Confidence 3455 36799999988886532 1 12 467889999999997 34689999999999999999762
Q ss_pred CCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC-cccCCCCCCChhHHHHHHHHHHHHHHHhhCC
Q 013204 124 RPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH-YWRYAHPGETEEEYSTRLANNLEDLILKEGP 202 (447)
Q Consensus 124 ~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~ 202 (447)
+ +++|++.+++|++....... .|... ..++... .+. .++++|++.+.
T Consensus 89 -~-gd~Vlv~~~~~~~~~~~~~~-~G~~~------------~~v~~~~~~~~-------------~d~~~l~~~i~---- 136 (424)
T 2po3_A 89 -L-TGEVIMPSMTFAATPHALRW-IGLTP------------VFADIDPDTGN-------------LDPDQVAAAVT---- 136 (424)
T ss_dssp -C-CSEEEEESSSCTHHHHHHHH-TTCEE------------EEECBCTTTSS-------------BCHHHHGGGCC----
T ss_pred -C-CCEEEECCCccHHHHHHHHH-cCCEE------------EEEecCCCcCC-------------cCHHHHHHhhC----
Confidence 2 37899999999988654333 22211 1111110 000 01356665553
Q ss_pred CcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-CCCccccccccccCCCCCCeeeec----ccCCC
Q 013204 203 ETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-AFGRLGTMFGCDKYSIKPDLVSFA----KALSS 277 (447)
Q Consensus 203 ~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-g~g~~g~~~~~~~~~~~~d~v~~s----K~l~g 277 (447)
+++++|++.+ ..|...+ +++|.++|++||+++|+||+|+ |+...|.. .+..+|++++| |.+++
T Consensus 137 ~~~~~v~~~~---~tG~~~~----l~~i~~la~~~~~~li~Dea~~~g~~~~~~~-----~~~~~di~~~S~sk~K~l~~ 204 (424)
T 2po3_A 137 PRTSAVVGVH---LWGRPCA----ADQLRKVADEHGLRLYFDAAHALGCAVDGRP-----AGSLGDAEVFSFHATKAVNA 204 (424)
T ss_dssp TTEEEEEEEC---GGGCCCC----HHHHHHHHHHTTCEEEEECTTCTTCEETTEE-----TTSSSSEEEEECCTTSSSCC
T ss_pred cCCcEEEEEC---CCCCcCC----HHHHHHHHHHcCCEEEEECccccCCeECCee-----cccccCEEEEeCCCCCCccC
Confidence 2466666643 3444433 9999999999999999999998 66544422 12225777655 88876
Q ss_pred cccceeEEEeC-hhHHHHhhhccCCCC--cc---CcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc
Q 013204 278 AYMPIGAILVS-PEVSEVIHSQSNTLG--SF---SHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF 351 (447)
Q Consensus 278 g~~~~g~~~~~-~~~~~~~~~~~~~~~--~~---~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l 351 (447)
.++|+++++ +++++.+........ .+ ..+.++..+++.+++++..++.+ ++..++.+++.+++++.|+++
T Consensus 205 --~~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~--~~~~~~~~~~~~~l~~~L~~~ 280 (424)
T 2po3_A 205 --FEGGAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAF--PEVIDRNRRNHAAYREHLADL 280 (424)
T ss_dssp --SSCEEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTCSC
T ss_pred --CCCeEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccC
Confidence 589999998 788777653211000 00 01122234566666666555433 235566666777777777654
Q ss_pred cCCCceeeEee-ee--eEEEEEeecC--CCCCCCCCCCcchHHHHHHHHHHcCceEEee-C-------------------
Q 013204 352 SDSPIIGEIRG-TG--LILGTEFADN--KSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-G------------------- 406 (447)
Q Consensus 352 ~~~~~~~~~~~-~g--~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-g------------------- 406 (447)
.+..+.....+ .. .++.+.+.+. .. ....+.+.|.++||.+.+. .
T Consensus 281 ~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~ 350 (424)
T 2po3_A 281 PGVLVADHDRHGLNNHQYVIVEIDEATTGI----------HRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPH 350 (424)
T ss_dssp TTEEECCGGGGSCCCCCCEEEEECHHHHSS----------CHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHH
T ss_pred CCccccCCCCCCccccEEEEEEECCccchh----------hHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChh
Confidence 22111110111 11 3344555421 00 1456788899999998752 1
Q ss_pred ------CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013204 407 ------DNIMMSPPFIMSPEEVDELISKYGKALKATEERVKELK 444 (447)
Q Consensus 407 ------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~~~~~ 444 (447)
..+|+.++..++++++++++++|++++++.++....++
T Consensus 351 ~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~~~~~~~~~~ 394 (424)
T 2po3_A 351 TERLAARVLSLPTGTAIGDDDIRRVADLLRLCATRGRELTARHR 394 (424)
T ss_dssp HHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHhhhHHHhhhhc
Confidence 01778777899999999999999999987765444444
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.86 E-value=3e-20 Score=183.10 Aligned_cols=330 Identities=15% Similarity=0.095 Sum_probs=185.2
Q ss_pred EEecCCccccccCCCCCHHHHHHHHHHHhc-CCcccc---cC--cCCChHHHHHH-HHHHHhcCcCCCCeE-EEeCChhh
Q 013204 35 YLDSLAGLWCTALGGSEPRLVAAATAQLNT-LPFYHS---FW--NRTTKPSLDLA-KELLEMFTASKMAKV-FFTNSGSE 106 (447)
Q Consensus 35 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~~~~~---~~--~~~~~~~~~l~-~~l~~~~~~~~~~~v-~~~~sGse 106 (447)
.+++.++. + +.||++++++.+++.+ ....+. .. ....+...+++ +.+++.+ +.+.+ ++++||++
T Consensus 34 ~i~l~~~~--~---~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~~~~v~~~~Gs~ 105 (425)
T 3ecd_A 34 QVELIASE--N---IVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLF---NAGHANVQPHSGAQ 105 (425)
T ss_dssp SEECCTTC--C---CCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHH---TCSEEECCCSSHHH
T ss_pred ceeeeccc--C---CCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHh---CCCCceeecCchHH
Confidence 46665542 2 3489999999998843 211111 00 11123455666 5566665 33445 45899999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccch-hhhhc-ccCCccccCCCCCCCCcceecCCCC-cccCCCCCCChh
Q 013204 107 ANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGST-LIAAS-LSGLPALHQKFDLPAPFVLHTDCPH-YWRYAHPGETEE 183 (447)
Q Consensus 107 A~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 183 (447)
|++.+++.+. .+++.|++.+++|++.. .+... ..+... . ...++... .+.
T Consensus 106 a~~~al~~~~--------~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~-~---------~~~~~~~~~~~~--------- 158 (425)
T 3ecd_A 106 ANGAVMLALA--------KPGDTVLGMSLDAGGHLTHGAKPALSGKWF-N---------ALQYGVSRDTML--------- 158 (425)
T ss_dssp HHHHHHHHHC--------CTTCEEEEECC------------------C-E---------EEEECCCTTTSS---------
T ss_pred HHHHHHHHcc--------CCCCEEEEcccccccceecchhhhhcccce-e---------eeecCCCcccCc---------
Confidence 9999999763 34578999999998832 22211 111100 0 00111110 000
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEEc-cccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-CCCcccccccccc
Q 013204 184 EYSTRLANNLEDLILKEGPETIAAFIAE-PVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-AFGRLGTMFGCDK 261 (447)
Q Consensus 184 ~~~~~~~~~le~~l~~~~~~~~a~vi~e-pv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-g~g~~g~~~~~~~ 261 (447)
.++++|++.+... ++++|+++ |.++ .. ..+++|.++|++||+++|+||+|. |+...+.....
T Consensus 159 ----~d~~~l~~~i~~~---~~~~v~~~~~~~~---~~----~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~-- 222 (425)
T 3ecd_A 159 ----IDYDQVEALAQQH---KPSLIIAGFSAYP---RK----LDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANP-- 222 (425)
T ss_dssp ----CCHHHHHHHHHHH---CCSEEEEECSCCC---SC----CCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCG--
T ss_pred ----cCHHHHHHHHhhc---CCcEEEEccccCC---Cc----CCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCc--
Confidence 0147788887642 24566666 4543 23 338999999999999999999964 44333322211
Q ss_pred CCCCCCeee--ecccCCCcccceeEEEeC-hhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-h--hcHHH
Q 013204 262 YSIKPDLVS--FAKALSSAYMPIGAILVS-PEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-E--RNIVE 335 (447)
Q Consensus 262 ~~~~~d~v~--~sK~l~gg~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~--~~~~~ 335 (447)
.. .+|+++ +||+++| +++|+++++ +++.+.+... ...+.+.+.++..++++.+++.... . +++.+
T Consensus 223 ~~-~~di~~~s~sK~l~g--~~~g~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~ 293 (425)
T 3ecd_A 223 VE-HAHVVTSTTHKTLRG--PRGGFVLTNDEEIAKKINSA------VFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYID 293 (425)
T ss_dssp GG-TCSEEEEESSGGGCC--CSCEEEEESCHHHHHHHHHH------HC-----CCCHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred hh-cCcEEEecCCcccCC--CCcEEEEeCCHHHHHHHHhh------hCccccCCccHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 11 157764 5699965 578999988 5676666531 1111222334434444444443322 2 35667
Q ss_pred HHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEE----ee------
Q 013204 336 QVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR----VS------ 405 (447)
Q Consensus 336 ~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~----~~------ 405 (447)
+++++.+++++.|+++ +..+... .+.+.++.+.+..... ....+.+.|.++||++. ++
T Consensus 294 ~~~~~~~~l~~~L~~~-g~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~gi~v~~~~~p~~~~~~~ 361 (425)
T 3ecd_A 294 RVLANAQALGDVLKAG-GVDLVTG-GTDNHLLLVDLRPKGL----------KGAQVEQALERAGITCNKNGIPFDPEKPT 361 (425)
T ss_dssp HHHHHHHHHHHHHHHT-TCEEGGG-SCSSSEEEEECGGGTC----------CHHHHHHHHHHTTEECEECCCTTCSSCTT
T ss_pred HHHHHHHHHHHHHHhC-CCeeccC-CCCceEEEEEeCCCCC----------CHHHHHHHHHHcCCEecccccCCCCCCCC
Confidence 8888888888888774 2211110 1245566666653221 14457788889999998 32
Q ss_pred -CCEEEEecCCCC----CHHHHHHHHHHHHHHHHHH
Q 013204 406 -GDNIMMSPPFIM----SPEEVDELISKYGKALKAT 436 (447)
Q Consensus 406 -g~~iR~~~~~~~----t~e~i~~~~~~l~~~l~~~ 436 (447)
.+.+|++++... ++++|++++++|++++++.
T Consensus 362 ~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 362 ITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp TCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 146999966544 5999999999999998775
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-20 Score=187.27 Aligned_cols=357 Identities=14% Similarity=0.125 Sum_probs=203.0
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHH----HHHHHHHhcCcCCCCeEEEeCChhh
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLD----LAKELLEMFTASKMAKVFFTNSGSE 106 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~----l~~~l~~~~~~~~~~~v~~~~sGse 106 (447)
.+..|+|+..+ ++.+|.+++++....-+... +. ....+...+ +.+++++++.....+.++|++||++
T Consensus 99 ~~~~yl~~~~~------~~~~~~v~~~~~~~~~n~~~-~~--~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~ 169 (497)
T 2qma_A 99 QHPDCIAHLHT------PPLMPAVAAEAMIAALNQSM-DS--WDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQ 169 (497)
T ss_dssp TSTTBCSSSCC------CCBHHHHHHHHHHHHHCCCT-TC--GGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHH
T ss_pred CCCCeeEeCCC------CCcHHHHHHHHHHHhhcccc-cc--hhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchH
Confidence 45567776544 34678888888766543211 11 112233333 4455777764223378999999999
Q ss_pred HHHHHHHHHHHHHH---------hcCCCC--cceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccC
Q 013204 107 ANDTQVKLVWYYNN---------ALGRPN--KKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRY 175 (447)
Q Consensus 107 A~~~Al~~~~~~~~---------~~~~~~--~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (447)
||..|++.++.+.. ..|.+. ++..++.+...|.+...+....+... ..+..++....++.
T Consensus 170 a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~---------~~v~~v~~~~~~~~ 240 (497)
T 2qma_A 170 SNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGE---------KAVMTVDANADGTM 240 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCG---------GGEEEECBCTTSSB
T ss_pred HHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCc---------ccEEEEecCCCCcC
Confidence 99999998764321 122221 23244445556665444433222100 01122222211110
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhC-C-CcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcc
Q 013204 176 AHPGETEEEYSTRLANNLEDLILKEG-P-ETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRL 253 (447)
Q Consensus 176 ~~~~~~~~~~~~~~~~~le~~l~~~~-~-~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~ 253 (447)
+ +++|++.+.... . ..+.+|+++..++..|.+.+ +++|.++|++||+++|+|++|+++...
T Consensus 241 -----d--------~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~----l~~I~~l~~~~~~~l~vD~a~~~~~~~ 303 (497)
T 2qma_A 241 -----D--------ITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDD----LDFIADMAVKHDMWMHVDGAYGGALIL 303 (497)
T ss_dssp -----C--------GGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGG
T ss_pred -----C--------HHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhhHHHHh
Confidence 1 266777765421 1 12446666666666677666 999999999999999999999977544
Q ss_pred ccccccccCCC-CCCeeee--cccCCCcccceeEEEeChh-HHHHhhhccCCCCccC-cCCCCCCcHHH----------H
Q 013204 254 GTMFGCDKYSI-KPDLVSF--AKALSSAYMPIGAILVSPE-VSEVIHSQSNTLGSFS-HGFTYSGHPVS----------C 318 (447)
Q Consensus 254 g~~~~~~~~~~-~~d~v~~--sK~l~gg~~~~g~~~~~~~-~~~~~~~~~~~~~~~~-~~~t~~~~~~~----------~ 318 (447)
.. +.....++ .+|++++ +|.++++ +++|+++.+++ .++.+.... .+. ...+..+++.. .
T Consensus 304 ~~-~~~~~~gi~~~D~i~~s~hK~l~~p-~~~G~l~~~~~~~~~~~~~~~----~yl~~~~~~~~~~~~~~~~~~r~~~a 377 (497)
T 2qma_A 304 SS-HKSRLKGVERAHSISVDFHKLFYQT-ISCGALLVNDKSNFKFLLHHA----DYLNREHDELPNLVDKSIATTKRFDA 377 (497)
T ss_dssp ST-TGGGGTTGGGCSEEEEETTTTTCCC-SSCEEEEESCGGGGGGGCC------------------------CCSCCCTH
T ss_pred Cc-chHhhcCcccCCEEEEcchhccCCC-cceEEEEEeCHHHHHHhcCCc----hhcCCccccCCCccccCCCCCCchhH
Confidence 33 33334456 6898876 7999888 69999998754 344442110 111 01111112211 1
Q ss_pred HHHHHHHHHHhh---hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHH
Q 013204 319 AVAIEALKIYKE---RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQC 395 (447)
Q Consensus 319 ~aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l 395 (447)
.+.+++++.+.. ++..++..++++++.+.|+++.+..++. ...+.++.+.+..... ....+...+.+.|
T Consensus 378 l~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~--~~~~~~v~f~~~~~~~------~~~~l~~~l~~~l 449 (497)
T 2qma_A 378 LKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLA--EPSLSTVLFRATHETA------DLDELNKALRLEA 449 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECS--CCSSSEEEEEECCSSS------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEc--CCCceEEEEEEcCCcc------CHHHHHHHHHHHH
Confidence 122334444333 2455677778888888887753322211 2334566666543210 0001234577888
Q ss_pred HHcCceEEee----C-CEEEEec-CCCCCHHHHHHHHHHHHHHHHHH
Q 013204 396 EKHGMLVRVS----G-DNIMMSP-PFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 396 ~~~Gi~~~~~----g-~~iR~~~-~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.++|+++.+. + ..+|+++ +..+|+++|++++++|+++++++
T Consensus 450 ~~~G~~~~~~~~~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 496 (497)
T 2qma_A 450 LTRGIAVLGETIVDGKTALKFTILNPCLTTSDFESLLSKINMLAVEL 496 (497)
T ss_dssp HHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 8999887642 2 4699997 78999999999999999987653
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-20 Score=182.74 Aligned_cols=319 Identities=17% Similarity=0.129 Sum_probs=195.1
Q ss_pred CCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcc
Q 013204 49 GSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKK 128 (447)
Q Consensus 49 ~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~ 128 (447)
.-+|++++++.+++...... +.+...++++.+++++. .+++++++||++|++.+++.++.+ ..+++
T Consensus 10 ~~~~~v~~a~~~~~~~~~~~------~~~~~~~l~~~la~~~~---~~~v~~~~ggt~al~~~~~~~~~~-----~~~gd 75 (375)
T 2fnu_A 10 CLDKEDKKAVLEVLNSKQLT------QGKRSLLFEEALCEFLG---VKHALVFNSATSALLTLYRNFSEF-----SADRN 75 (375)
T ss_dssp CCCHHHHHHHHHHHTSSCCS------SSHHHHHHHHHHHHHHT---CSEEEEESCHHHHHHHHHHHSSCC-----CTTSC
T ss_pred CCCHHHHHHHHHHHHcCccc------CChHHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHhccc-----CCCCC
Confidence 36899999999998763221 35667889999999973 348999999999999999976200 13347
Q ss_pred eEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEE
Q 013204 129 KFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAF 208 (447)
Q Consensus 129 ~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~v 208 (447)
+|++.+++||+....... .|... ..++...... . ++++|++.+. + ++++|
T Consensus 76 ~Vl~~~~~~~~~~~~~~~-~g~~~------------~~~~~~~~~~-----~--------d~~~l~~~i~---~-~~~~v 125 (375)
T 2fnu_A 76 EIITTPISFVATANMLLE-SGYTP------------VFAGIKNDGN-----I--------DELALEKLIN---E-RTKAI 125 (375)
T ss_dssp EEEECSSSCTHHHHHHHH-TTCEE------------EECCBCTTSS-----B--------CGGGSGGGCC---T-TEEEE
T ss_pred EEEECCCccHhHHHHHHH-CCCEE------------EEeccCCCCC-----C--------CHHHHHhhcC---c-CceEE
Confidence 899999999987655443 22211 1111110000 0 0255555443 2 45555
Q ss_pred EEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee--eec--ccCCCcccceeE
Q 013204 209 IAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFA--KALSSAYMPIGA 284 (447)
Q Consensus 209 i~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~s--K~l~gg~~~~g~ 284 (447)
++.+. +|.+.+ +++|.++|++||+++|+||+|+ +|..... ...+..+|++ ++| |.++. ++|+
T Consensus 126 ~~~~~---tG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~~~~---~~~~~~~~i~~~s~s~~K~~~~---g~g~ 191 (375)
T 2fnu_A 126 VSVDY---AGKSVE----VESVQKLCKKHSLSFLSDSSHA-LGSEYQN---KKVGGFALASVFSFHAIKPITT---AEGG 191 (375)
T ss_dssp EEECG---GGCCCC----HHHHHHHHHHHTCEEEEECTTC-TTCEETT---EETTSSSSEEEEECCTTSSSCC---SSCE
T ss_pred EEeCC---cCCccC----HHHHHHHHHHcCCEEEEECccc-cCCeECC---eeccccCCeEEEeCCCCCCccc---cCce
Confidence 54443 566655 8999999999999999999997 3332211 1122223554 677 98854 3677
Q ss_pred EEe-C-hhHHHHhhhccCCCC------c---cCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccC
Q 013204 285 ILV-S-PEVSEVIHSQSNTLG------S---FSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD 353 (447)
Q Consensus 285 ~~~-~-~~~~~~~~~~~~~~~------~---~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~ 353 (447)
++. + +++++.+........ . ...+.++..+++.+++++..++.+ ++..++.+++.+++.+.|+++++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~ 269 (375)
T 2fnu_A 192 AVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKA--PFLMQKREEAALTYDRIFKDNPY 269 (375)
T ss_dssp EEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTCSS
T ss_pred EEEeCCHHHHHHHHHHHhcCCccccccccccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC
Confidence 776 3 667766653211000 0 001222355666666555544332 34567777888888888877532
Q ss_pred CCceee---EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-------------------------
Q 013204 354 SPIIGE---IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS------------------------- 405 (447)
Q Consensus 354 ~~~~~~---~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------------------------- 405 (447)
..+... ..+.+.++.+.+..... .....+.+.|.++||.+...
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 340 (375)
T 2fnu_A 270 FTPLHPLLKDKSSNHLYPILMHQKFF---------TCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDF 340 (375)
T ss_dssp EEESGGGCSSCCCCSCEEEEECGGGG---------GGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHH
T ss_pred ccccCCCCCCCcceEEEEEEeCcccc---------chHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHH
Confidence 111110 01122333455543100 01456888899999988721
Q ss_pred -CCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 406 -GDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 406 -g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.+.+|++++..+|++++++++++|+++++++
T Consensus 341 ~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~ 372 (375)
T 2fnu_A 341 YHAEISLPCHANLNLESVQNIAHSVLKTFESF 372 (375)
T ss_dssp HHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HhCEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 1469999998899999999999999988764
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.1e-21 Score=183.29 Aligned_cols=334 Identities=13% Similarity=0.067 Sum_probs=194.9
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCCc-ccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHH
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPF-YHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQ 111 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~A 111 (447)
|+++|..++.....+| .||.+.+++.+.++.... ......++.+...++++++++++. .+..++++||++|+..+
T Consensus 3 ~~~~~~~~~~~~l~~~-~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~---~~~~i~~~~G~~a~~~a 78 (357)
T 3lws_A 3 NRLRTSFQQTTGQISG-HGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLG---MDDAVFFPSGTMAQQVA 78 (357)
T ss_dssp CHHHHHHHTCSEESSB-SSCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHHT---CSEEEEESCHHHHHHHH
T ss_pred chhhhHHHhhcccccC-CCCCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHhC---CCcEEEecCcHHHHHHH
Confidence 3455522333333444 578888888877765221 111112234567889999999873 35667789999999999
Q ss_pred HHHHHHHHHhcCCCCcceEEEEcCCCccchhh---hhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHH
Q 013204 112 VKLVWYYNNALGRPNKKKFIARQKSYHGSTLI---AASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188 (447)
Q Consensus 112 l~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (447)
++.+... +++.+|+.++.||..... .....+... ..++..+ + ..
T Consensus 79 l~~~~~~-------gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~------------~~v~~~~-~-----~~-------- 125 (357)
T 3lws_A 79 LRIWSDE-------TDNRTVAYHPLCHLEIHEQDGLKELHPIET------------ILVGAAD-R-----LM-------- 125 (357)
T ss_dssp HHHHHHH-------HTCCEEEECTTCHHHHSSTTHHHHHSSCEE------------EECSCTT-S-----CC--------
T ss_pred HHHHhhc-------CCCcEEEecccceeeeeccchhhhccCcEE------------EEecCCC-C-----Cc--------
Confidence 9977533 222266667777765322 111112111 1111100 0 00
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-----CCCccccccccccCC
Q 013204 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-----AFGRLGTMFGCDKYS 263 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-----g~g~~g~~~~~~~~~ 263 (447)
+++++++. ++ +++|++++.++.+|..+++.+++++|.++|++||++||+||+|. ..++....+.
T Consensus 126 d~~~l~~~-----~~-~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~----- 194 (357)
T 3lws_A 126 TLDEIKAL-----PD-IACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA----- 194 (357)
T ss_dssp CHHHHHTC-----CS-CSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH-----
T ss_pred CHHHHhcC-----cC-cceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH-----
Confidence 13555554 22 56677777665542366788999999999999999999999875 1122211111
Q ss_pred CCCCee--eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 013204 264 IKPDLV--SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIA 341 (447)
Q Consensus 264 ~~~d~v--~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~ 341 (447)
...|++ ++||.++++ ..|++++++++++.+.... ....+..+..++.+ +++.++++... +. ..+..++.
T Consensus 195 ~~~d~~~~s~sK~~~~~--~gg~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~l~~~~-~~-~~~~~~~~ 265 (357)
T 3lws_A 195 GLFDSIYISFYKGLGGI--AGAILAGPAAFCQTARIWK----RRYGGDLISLYPYI-VSADYYYELRK-DR-MGQYYEQA 265 (357)
T ss_dssp TTSSEEEEESSSTTCCS--SCEEEEECHHHHHHHHHHH----HHTTCCCSCCHHHH-HHHHHHHHHHT-TC-HHHHHHHH
T ss_pred hcCCEEEEeccccCCCC--ceEEEEcCHHHHHHHHHHH----HHhcCCcccchHHH-HHHHHHHHHHH-HH-HHHHHHHH
Confidence 123544 789999664 2388999999888775321 11112233334443 44456666421 22 34456677
Q ss_pred HHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC------CEEEEecC-
Q 013204 342 PKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG------DNIMMSPP- 414 (447)
Q Consensus 342 ~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g------~~iR~~~~- 414 (447)
+++.+.|+++.+..+. ..+..+.++.+.+..... .....+.+.|.++||++.++. ..+|++..
T Consensus 266 ~~l~~~L~~~~g~~~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~ 335 (357)
T 3lws_A 266 KQLAEQFNALPGVHTT-PEVPVSNMFHLHFDGQAA---------DISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGD 335 (357)
T ss_dssp HHHHHHHHTSTTEEEE-SSSCSSSEEEEEEESCHH---------HHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCT
T ss_pred HHHHHHHHhCCCCeec-cCCCcceEEEEEecCChH---------HHHHHHHHHHHhcCeEEecccccCCCceEEEEEecc
Confidence 7888888765221110 123456677777754210 013457888999999988652 25888754
Q ss_pred --CCCCHHHHHHHHHHHHHHH
Q 013204 415 --FIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 415 --~~~t~e~i~~~~~~l~~~l 433 (447)
...+++++++++++|.+++
T Consensus 336 ~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 336 AYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp TGGGSCHHHHHHHHHHHHHHC
T ss_pred hhhhcCHHHHHHHHHHHHHhc
Confidence 3468999999999998765
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-19 Score=177.23 Aligned_cols=314 Identities=12% Similarity=0.105 Sum_probs=201.6
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcce
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 129 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~ 129 (447)
-+|++.+++.+.+.+... .+.+...++++.+++++ +.+++++++||++|++.+++.+. . .++++
T Consensus 18 ~~~~~~~a~~~~~~~~~~------~~~~~~~~l~~~la~~~---~~~~~~~~~~gt~al~~~~~~~~------~-~~gd~ 81 (393)
T 1mdo_A 18 MGAEELAAVKTVLDSGWI------TTGPKNQELEAAFCRLT---GNQYAVAVSSATAGMHIALMALG------I-GEGDE 81 (393)
T ss_dssp CCHHHHHHHHHHHHHTCC------SSSHHHHHHHHHHHHHH---CCSEEEEESCHHHHHHHHHHHTT------C-CTTCE
T ss_pred CCHHHHHHHHHHHhcCCc------CCChHHHHHHHHHHHHh---CCCcEEEecChHHHHHHHHHHcC------C-CCCCE
Confidence 358999999998876422 14567888999999997 34589999999999999999761 0 33578
Q ss_pred EEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 013204 130 FIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFI 209 (447)
Q Consensus 130 vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi 209 (447)
|++.+++|++....... .|... ..++.... ... .+++++++.+. +++++|+
T Consensus 82 Vl~~~~~~~~~~~~~~~-~g~~~------------~~v~~~~~------~~~------~d~~~l~~~l~----~~~~~v~ 132 (393)
T 1mdo_A 82 VITPSMTWVSTLNMIVL-LGANP------------VMVDVDRD------TLM------VTPEHIEAAIT----PQTKAII 132 (393)
T ss_dssp EEEESSSCHHHHHHHHH-TTCEE------------EEECBCTT------TCC------BCHHHHHHHCC----TTEEEEC
T ss_pred EEeCCCccHhHHHHHHH-CCCEE------------EEEeccCC------cCC------CCHHHHHHhcC----CCceEEE
Confidence 99999999887543332 22211 11111100 000 01367777664 2567777
Q ss_pred EccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-CCCccccccccccCCCCCCeeeec----ccCCCcccceeE
Q 013204 210 AEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-AFGRLGTMFGCDKYSIKPDLVSFA----KALSSAYMPIGA 284 (447)
Q Consensus 210 ~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-g~g~~g~~~~~~~~~~~~d~v~~s----K~l~gg~~~~g~ 284 (447)
+++. .|...+ +++|.++|++||+++|+||+|+ |+...+.. ++. +|++++| |.+++| ++|+
T Consensus 133 ~~~~---~G~~~~----~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~-----~~~-~d~~~~S~~k~K~l~~~--~~g~ 197 (393)
T 1mdo_A 133 PVHY---AGAPAD----LDAIYALGERYGIPVIEDAAHATGTSYKGRH-----IGA-RGTAIFSFHAIKNITCA--EGGI 197 (393)
T ss_dssp CBCG---GGCCCC----HHHHHHHHHHHTCCBCEECTTCTTCEETTEE-----TTS-SSEEEEECCTTSSSCSS--SCEE
T ss_pred EeCC---CCCcCC----HHHHHHHHHHcCCeEEEECccccCCeECCee-----cCC-CCeEEEeCCCCCccccc--cceE
Confidence 7653 344544 9999999999999999999998 33233321 222 7888766 888764 6889
Q ss_pred EEeC-hhHHHHhhhccCCCC--------------cc---CcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 013204 285 ILVS-PEVSEVIHSQSNTLG--------------SF---SHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQD 346 (447)
Q Consensus 285 ~~~~-~~~~~~~~~~~~~~~--------------~~---~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~ 346 (447)
++.+ +++++.+........ .+ ..+..+..+++.++.+.+.++.+ ++..++.+++.+++++
T Consensus 198 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~~~~l~~ 275 (393)
T 1mdo_A 198 VVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKL--DALNARRAAIAAQYHQ 275 (393)
T ss_dssp EEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 8886 788777653211000 00 01111334677777666666543 3456666777888888
Q ss_pred hHhhccCCCcee----eEeeeeeEEEEEeecC--CCCCCCCCCCcchHHHHHHHHHHcCceEEeeC--------------
Q 013204 347 GVKAFSDSPIIG----EIRGTGLILGTEFADN--KSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-------------- 406 (447)
Q Consensus 347 ~L~~l~~~~~~~----~~~~~g~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-------------- 406 (447)
.|+++. ..+.. ..++.+.++.+.+... .. ....+.+.|.++||.+.++.
T Consensus 276 ~L~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ 344 (393)
T 1mdo_A 276 AMADLP-FQPLSLPSWEHIHAWHLFIIRVDEARCGI----------TRDALMASLKTKGIGTGLHFRAAHTQKYYRERFP 344 (393)
T ss_dssp HHHTSS-CEECCCCSSCEECCCSCEEEECCHHHHSS----------CHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHST
T ss_pred HHhcCC-cccccCCCCCCCceeEEEEEEeccccccc----------CHHHHHHHHHhCCCCcccccCccccChhhhccCC
Confidence 887752 11110 1223334566666531 10 14568889999999887531
Q ss_pred ------------CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 407 ------------DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 407 ------------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
..+|+++...+|++|+++++++|+++++..
T Consensus 345 ~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~ 386 (393)
T 1mdo_A 345 TLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAGQG 386 (393)
T ss_dssp TCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred ccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 269999888899999999999999887653
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-20 Score=183.58 Aligned_cols=329 Identities=14% Similarity=0.093 Sum_probs=191.1
Q ss_pred CCHHHHHHHHHHHhc-CCcccc---cCcCCC--hHHHHHH-HHHHHhcCcCCCCeEEE-eCChhhHHHHHHHHHHHHHHh
Q 013204 50 SEPRLVAAATAQLNT-LPFYHS---FWNRTT--KPSLDLA-KELLEMFTASKMAKVFF-TNSGSEANDTQVKLVWYYNNA 121 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~-~~~~~~---~~~~~~--~~~~~l~-~~l~~~~~~~~~~~v~~-~~sGseA~~~Al~~~~~~~~~ 121 (447)
.+|+|++++.+++.+ ....+. ...+.. +...+++ +++++.+ +.+.+.+ ++||++|++.+++.++
T Consensus 57 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~---g~~~~~v~~~sGs~a~~~a~~~~~----- 128 (447)
T 3h7f_A 57 VPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALF---GAEFANVQPHSGAQANAAVLHALM----- 128 (447)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH---TCSEEECCCSSHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHc---CCCceEEEeCCHHHHHHHHHHHhc-----
Confidence 489999999988853 322211 111111 1234566 7787776 3445666 8999999999999774
Q ss_pred cCCCCcceEEEEcCCCccch-hhh-hcccCCccccCCCCCCCCcceecCCC-CcccCCCCCCChhHHHHHHHHHHHHHHH
Q 013204 122 LGRPNKKKFIARQKSYHGST-LIA-ASLSGLPALHQKFDLPAPFVLHTDCP-HYWRYAHPGETEEEYSTRLANNLEDLIL 198 (447)
Q Consensus 122 ~~~~~~~~vi~~~~~yhg~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~le~~l~ 198 (447)
..+++|++.++.|+++. .+. ....+.. +. ....++. +.+ ..+++++++.+.
T Consensus 129 ---~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~-~~---------~~~~~~~~~~~-------------~~d~~~l~~~i~ 182 (447)
T 3h7f_A 129 ---SPGERLLGLDLANGGHLTHGMRLNFSGKL-YE---------NGFYGVDPATH-------------LIDMDAVRATAL 182 (447)
T ss_dssp ---CTTCEEEEECGGGTCCGGGTCTTSHHHHS-SE---------EEEECCCTTTC-------------SCCHHHHHHHHH
T ss_pred ---CCCCEEEecCcccccccchhhhhhhcCCe-eE---------EEEcCcCcccC-------------CcCHHHHHHHHH
Confidence 33578999999887732 111 1111100 00 0011110 000 011478888876
Q ss_pred hhCCCcEEEEEE-ccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhh-cCCCccccccccccCCCCCCee--eeccc
Q 013204 199 KEGPETIAAFIA-EPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVI-CAFGRLGTMFGCDKYSIKPDLV--SFAKA 274 (447)
Q Consensus 199 ~~~~~~~a~vi~-epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~-~g~g~~g~~~~~~~~~~~~d~v--~~sK~ 274 (447)
...+ ++|++ .|.+++++ ++++|+++|++||++||+||+| .|+...|.... ... ..|++ +++|+
T Consensus 183 ~~~~---~~i~~~~~~~~~~~-------~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~--~~~-~~di~~~s~sK~ 249 (447)
T 3h7f_A 183 EFRP---KVIIAGWSAYPRVL-------DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPS--PVP-HADVVSTTVHKT 249 (447)
T ss_dssp HHCC---SEEEEECSSCCSCC-------CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC--STT-TCSEEEEESSGG
T ss_pred hcCC---eEEEEcCCCCCCcc-------CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCC--CCC-CCcEEEecCCcC
Confidence 4322 35555 56665543 3999999999999999999997 44433332111 111 24666 46899
Q ss_pred CCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCC-CcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHhHhh
Q 013204 275 LSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS-GHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQDGVKA 350 (447)
Q Consensus 275 l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~-~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~ 350 (447)
++| ++.|++++++++++.+.... ..++++ ++...++++.+++..+.. ++..+++.++.+++.+.|++
T Consensus 250 l~G--~~gG~i~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 320 (447)
T 3h7f_A 250 LGG--GRSGLIVGKQQYAKAINSAV-------FPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMA 320 (447)
T ss_dssp GCC--CSCEEEEECGGGHHHHHHHH-------TTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCC--CCeEEEEECHHHHHHHhhhc-------CCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 975 68899999999888776421 111222 233334444445554322 34567778888888888765
Q ss_pred c----cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEE----ee-------CCEEEEecCC
Q 013204 351 F----SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR----VS-------GDNIMMSPPF 415 (447)
Q Consensus 351 l----~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~----~~-------g~~iR~~~~~ 415 (447)
+ .+...+.. ...+.++.+++..... ....+.+.|.++||++. +. .+.+|++++.
T Consensus 321 ~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~ 389 (447)
T 3h7f_A 321 PDVAKAGVSVVSG-GTDVHLVLVDLRDSPL----------DGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPA 389 (447)
T ss_dssp HHHHHTTCEEGGG-SCSSSEEEEECTTSSC----------CHHHHHHHHHHTTEECBC-------------CEEEEECHH
T ss_pred ccccCCCeEEecC-CCCCCEEEEEcCCCCC----------CHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHH
Confidence 4 12221110 1123445555543211 13445666777799877 32 2569999775
Q ss_pred C----CCHHHHHHHHHHHHHHHHH--------HHHHHHHhhh
Q 013204 416 I----MSPEEVDELISKYGKALKA--------TEERVKELKS 445 (447)
Q Consensus 416 ~----~t~e~i~~~~~~l~~~l~~--------~~~~~~~~~~ 445 (447)
. ++++++++++++|++++++ ++++...++.
T Consensus 390 ~~~~~~~~eei~~~~~~l~~~l~~~~~~~~~~~~~~v~~~~~ 431 (447)
T 3h7f_A 390 LATRGFGDTEFTEVADIIATALATGSSVDVSALKDRATRLAR 431 (447)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH
T ss_pred HhhCCCCHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 5 6899999999999999853 4555555443
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.6e-20 Score=178.71 Aligned_cols=309 Identities=14% Similarity=0.138 Sum_probs=191.7
Q ss_pred HHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEE
Q 013204 54 LVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIAR 133 (447)
Q Consensus 54 v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~ 133 (447)
+.+++.+.+.... ..+.+...++++.+++++ +.+++++++||++|++.+++.+. -.++++|++.
T Consensus 21 ~~~~~~~~~~~~~------~~~~~~~~~l~~~la~~~---~~~~~~~~~~gt~a~~~~~~~~~-------~~~gd~v~~~ 84 (374)
T 3uwc_A 21 YLNDLREFIKTAD------FTLGAELEKFEKRFAALH---NAPHAIGVGTGTDALAMSFKMLN-------IGAGDEVITC 84 (374)
T ss_dssp HHHHHHHHHHHTC------CSSCHHHHHHHHHHHHHT---TCSEEEEESCHHHHHHHHHHHTT-------CCTTCEEEEE
T ss_pred HHHHHHHHHHcCC------cccChhHHHHHHHHHHHh---CCCcEEEeCCHHHHHHHHHHHcC-------CCCCCEEEEC
Confidence 6677776665532 125677889999999997 34489999999999999998761 1345789999
Q ss_pred cCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccc
Q 013204 134 QKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPV 213 (447)
Q Consensus 134 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv 213 (447)
.+.||+........ |... ..++..+.+. .+ ++++++.+. +++++|+ |.
T Consensus 85 ~~~~~~~~~~~~~~-g~~~------------~~~~~~~~~~-----~d--------~~~l~~~~~----~~~~~v~--~~ 132 (374)
T 3uwc_A 85 ANTFIASVGAIVQA-GATP------------VLVDSENGYV-----ID--------PEKIEAAIT----DKTKAIM--PV 132 (374)
T ss_dssp SSSCHHHHHHHHHT-TCEE------------EEECBCTTSS-----BC--------GGGTGGGCC----TTEEEEC--CB
T ss_pred CCccHHHHHHHHHc-CCEE------------EEEecCCCCC-----cC--------HHHHHHhCC----CCceEEE--Ee
Confidence 99999876544332 2211 1111111000 00 244555443 2566666 55
Q ss_pred cCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec----ccCCC-cccceeEEEeC
Q 013204 214 IGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA----KALSS-AYMPIGAILVS 288 (447)
Q Consensus 214 ~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s----K~l~g-g~~~~g~~~~~ 288 (447)
++ .|...+ +++|.++|++||+++|+||+|+.+.. +.....+..+|++++| |.+++ | . .|+++.+
T Consensus 133 n~-~G~~~~----~~~i~~~~~~~~~~li~D~~~~~g~~----~~~~~~~~~~d~~~~s~~~~K~l~~~g-~-~g~~~~~ 201 (374)
T 3uwc_A 133 HY-TGNIAD----MPALAKIAKKHNLHIVEDACQTILGR----INDKFVGSWGQFACFSLHPLKNLNVWS-D-AGVIITH 201 (374)
T ss_dssp CG-GGCCCC----HHHHHHHHHHTTCEEEEECTTCTTCE----ETTEETTSSSSEEEEECSSSSSSCCSS-C-CEEEEES
T ss_pred CC-cCCcCC----HHHHHHHHHHcCCEEEEeCCCccCce----eCCeeccccccEEEEeCCCCCcCCccc-e-eEEEEeC
Confidence 54 455554 99999999999999999999983222 2223344447998877 99987 4 2 6777765
Q ss_pred h-hHHHHhhhccCCCC-----ccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccC-CCceeeEe
Q 013204 289 P-EVSEVIHSQSNTLG-----SFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD-SPIIGEIR 361 (447)
Q Consensus 289 ~-~~~~~~~~~~~~~~-----~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~-~~~~~~~~ 361 (447)
+ ++.+.+........ ....+.++..+++.++.++..++.+ ++..++.+++.+++++.|+++.. ........
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 279 (374)
T 3uwc_A 202 SDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMNQL--ETITEKRRGIAHLYDQSFVDLSEFIDVPVRRE 279 (374)
T ss_dssp CHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHTGGGTTTEECCCCCT
T ss_pred CHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCeEEeccCCC
Confidence 4 56665543211000 0011223344566655554444322 34667778888888888877632 21111111
Q ss_pred -eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC----------------------------CEEEEe
Q 013204 362 -GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG----------------------------DNIMMS 412 (447)
Q Consensus 362 -~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g----------------------------~~iR~~ 412 (447)
+...+..+.+.... ...+.+.|.++||.+++.. +.+|++
T Consensus 280 ~~~~~~~~~~~~~~~------------~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~ 347 (374)
T 3uwc_A 280 GVYHVFHIYVLRVKY------------RDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLP 347 (374)
T ss_dssp TEECCCSSEEEEETT------------HHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEEC
T ss_pred CCceeeEEEEEEcCC------------HHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEcc
Confidence 11111112222111 4568889999999887653 569999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHH
Q 013204 413 PPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 413 ~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
++..+|++||++++++|++++++
T Consensus 348 ~~~~~t~edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 348 AHPYLTEEEINYIIKKVREFYLE 370 (374)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998864
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.4e-20 Score=179.68 Aligned_cols=316 Identities=16% Similarity=0.139 Sum_probs=190.8
Q ss_pred cCCCCCH----HHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHh
Q 013204 46 ALGGSEP----RLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNA 121 (447)
Q Consensus 46 ~lG~~~p----~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~ 121 (447)
.+++++| ++.+++.+.+.... ..+.+...++++.+++++ +.++++|++||++|++.+++.+.
T Consensus 7 ~l~~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~l~~~la~~~---~~~~~i~~~sgt~al~~~l~~l~----- 72 (373)
T 3frk_A 7 SFKPMHDEIEYEIKFKFEEIYKRNW------FILGDEDKKFEQEFADYC---NVNYCIGCGNGLDALHLILKGYD----- 72 (373)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTC------CSSSHHHHHHHHHHHHHH---TSSEEEEESCHHHHHHHHHHHTT-----
T ss_pred CCCcccCCCCHHHHHHHHHHHHCCC------ccCCchHHHHHHHHHHHh---CCCeEEEeCCHHHHHHHHHHHcC-----
Confidence 3444444 45555555554432 125677889999999997 34589999999999999999761
Q ss_pred cCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC-CcccCCCCCCChhHHHHHHHHHHHHHHHhh
Q 013204 122 LGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP-HYWRYAHPGETEEEYSTRLANNLEDLILKE 200 (447)
Q Consensus 122 ~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~le~~l~~~ 200 (447)
-..+++|++..+.|++........ |.... .++.. +.+. . +++++++.+.
T Consensus 73 --~~~gd~Vi~~~~~~~~~~~~~~~~-g~~~~------------~~~~~~~~~~-----~--------d~~~l~~~l~-- 122 (373)
T 3frk_A 73 --IGFGDEVIVPSNTFIATALAVSYT-GAKPI------------FVEPDIRTYN-----I--------DPSLIESAIT-- 122 (373)
T ss_dssp --CCTTCEEEEETTSCTHHHHHHHHH-SCEEE------------EECEETTTTE-----E--------CGGGTGGGCC--
T ss_pred --CCCcCEEEECCCCcHHHHHHHHHc-CCEEE------------EEeccccccC-----c--------CHHHHHHhcC--
Confidence 133578999999998875443332 22111 11110 0000 0 0245555443
Q ss_pred CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec----ccCC
Q 013204 201 GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA----KALS 276 (447)
Q Consensus 201 ~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s----K~l~ 276 (447)
+++++|+ +++ ..|...+ +++|.++|++||+++|+||+|+ +|.. +.....+..+|++++| |.++
T Consensus 123 --~~~~~v~--~~n-~~G~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~---~~~~~~~~~~d~~~~S~~~~K~l~ 189 (373)
T 3frk_A 123 --EKTKAII--AVH-LYGQPAD----MDEIKRIAKKYNLKLIEDAAQA-HGSL---YKGMKVGSLGDAAGFSFYPAKNLG 189 (373)
T ss_dssp --TTEEEEE--EEC-CTTCCCC----HHHHHHHHHHHTCEEEEECTTC-TTCE---ETTEETTSSSSEEEEECCTTSSSC
T ss_pred --CCCeEEE--EEC-CCcCccc----HHHHHHHHHHcCCEEEEECCcc-cCCE---ECCEeccccccEEEEeCcCCCccC
Confidence 3566666 333 4565555 9999999999999999999997 3221 2223344447888877 9998
Q ss_pred C-cccceeEEEeC-hhHHHHhhhccCC-----CCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHh
Q 013204 277 S-AYMPIGAILVS-PEVSEVIHSQSNT-----LGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVK 349 (447)
Q Consensus 277 g-g~~~~g~~~~~-~~~~~~~~~~~~~-----~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~ 349 (447)
+ | ..|+++.+ +++.+.+...... ......+.++..+++.++.+...++.+ ++..++.+++.+++++.|+
T Consensus 190 ~~g--~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~~~~~l~ 265 (373)
T 3frk_A 190 SLG--DGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLKYL--DKWNEERRKIAQKYIAGIN 265 (373)
T ss_dssp CSS--SCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHCC
T ss_pred ccc--eeEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhc
Confidence 7 4 36777775 4565555432110 001112234455677766665555433 3456777777888888776
Q ss_pred hccCCCceeeEe-eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC----------------------
Q 013204 350 AFSDSPIIGEIR-GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG---------------------- 406 (447)
Q Consensus 350 ~l~~~~~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g---------------------- 406 (447)
++. ..+..... ....+..+.+... ....+.+.|.++||.+++..
T Consensus 266 ~~~-~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (373)
T 3frk_A 266 NPN-VIIPVEADYAKHVWYTFVIRSE------------KRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPI 332 (373)
T ss_dssp CTT-EECCCCCTTEECCCSSEEEEES------------SHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHH
T ss_pred cCc-eEeccCCCCCceeeEEEEEEeC------------CHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHH
Confidence 652 11110000 1111111112111 14568899999999987432
Q ss_pred ------CEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 407 ------DNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 407 ------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+.+|++....+|++||++++++|+++..+
T Consensus 333 ~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~ 367 (373)
T 3frk_A 333 AEKIANEILSIPIWYGMKNEEIEYVIDKINAWKLE 367 (373)
T ss_dssp HHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC--
T ss_pred HHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhh
Confidence 46999999999999999999999876543
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.5e-20 Score=179.38 Aligned_cols=323 Identities=13% Similarity=0.077 Sum_probs=198.9
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc---CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCC
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA---SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPN 126 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~ 126 (447)
-+|++.+++.+..... ++.. ......++.+++++.+.. .+.++++|++||++|++.+++.+... .++
T Consensus 16 ~~~~v~~a~~~~~~~~--~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~----~~~- 85 (385)
T 2bkw_A 16 LSGAVQKALDVPSLGH--TSPE---FVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILS----KAP- 85 (385)
T ss_dssp CCHHHHHTTSCCCCCT--TSHH---HHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCT----TCS-
T ss_pred chHHHHHHHhcccccc--CCHH---HHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhcc----CCC-
Confidence 4577777665543321 1100 112345667777777632 13479999999999999999976200 012
Q ss_pred cceEEEEc-CCCccchhhhhcccCCccccCCCCCCCCcceecCC-CCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCc
Q 013204 127 KKKFIARQ-KSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDC-PHYWRYAHPGETEEEYSTRLANNLEDLILKEGPET 204 (447)
Q Consensus 127 ~~~vi~~~-~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~ 204 (447)
+++|++++ +.||..........|.. +..++. +..+. . ++++|++.+.. ++
T Consensus 86 gd~vlv~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~~-----~--------d~~~l~~~l~~---~~ 137 (385)
T 2bkw_A 86 NKNVLVVSTGTFSDRFADCLRSYGAQ------------VDVVRPLKIGES-----V--------PLELITEKLSQ---NS 137 (385)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHTTCE------------EEEECCSSTTSC-----C--------CHHHHHHHHHH---SC
T ss_pred CCeEEEEcCCcchHHHHHHHHHcCCc------------eEEEecCCCCCC-----C--------CHHHHHHHHhc---CC
Confidence 36777774 45666532222222221 112222 11100 0 14778887764 24
Q ss_pred EEEEEEccccCCCCCccCChhHHHHHHHHHHhc--CCEEEEehhhcCCCccccccccccCCCCCCeeee--cccCCCccc
Q 013204 205 IAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKY--DILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF--AKALSSAYM 280 (447)
Q Consensus 205 ~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~--g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~--sK~l~gg~~ 280 (447)
+++|+++++++.+|.+.+ +++|.++|++| |+++|+||+|+ +|.. .+... ...+|++++ +|.++|+ .
T Consensus 138 ~~~v~~~~~~nptG~~~~----l~~i~~~~~~~~~~~~li~D~a~~-~~~~--~~~~~--~~~~d~~~~s~~K~~~~~-~ 207 (385)
T 2bkw_A 138 YGAVTVTHVDTSTAVLSD----LKAISQAIKQTSPETFFVVDAVCS-IGCE--EFEFD--EWGVDFALTASQKAIGAP-A 207 (385)
T ss_dssp CSEEEEESEETTTTEECC----HHHHHHHHHHHCTTSEEEEECTTT-TTTS--CCCTT--TTTCSEEEEESSSTTCCC-S
T ss_pred CCEEEEEccCCCcCeEcC----HHHHHHHHHhhCCCCEEEEECccc-cCCc--ccccc--ccCceEEEecCccccccC-C
Confidence 567888888888888776 89999999999 99999999997 4332 12222 234687764 6988876 5
Q ss_pred ceeEEEeChhHHH-Hhhhc----cCCC-----------CccCcC---CCCCCcHHHHHHHHHHHHHHhh---hcHHHHHH
Q 013204 281 PIGAILVSPEVSE-VIHSQ----SNTL-----------GSFSHG---FTYSGHPVSCAVAIEALKIYKE---RNIVEQVN 338 (447)
Q Consensus 281 ~~g~~~~~~~~~~-~~~~~----~~~~-----------~~~~~~---~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~ 338 (447)
++|++++++++++ .+... .... ..+..+ ..++.++.+++++.++++.+.+ ++..++++
T Consensus 208 G~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~ 287 (385)
T 2bkw_A 208 GLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHR 287 (385)
T ss_dssp CEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred cceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 7799999998776 54210 0000 001110 1235677788777788887653 34567778
Q ss_pred HHHHHHHHhH-hhccCCCceeeEe---eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee------CCE
Q 013204 339 KIAPKFQDGV-KAFSDSPIIGEIR---GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS------GDN 408 (447)
Q Consensus 339 ~~~~~l~~~L-~~l~~~~~~~~~~---~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------g~~ 408 (447)
++.+++.+.| +++ +..+..... ..+.++.+.+.+ ...+.+.|.++||.+.++ .+.
T Consensus 288 ~~~~~l~~~L~~~~-g~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l~~~gi~v~~g~~~~~~~~~ 352 (385)
T 2bkw_A 288 EMSDWFKDSLVNGL-QLTSVSRYPSNMSAHGLTAVYVAD--------------PPDVIAFLKSHGVVIAGGIHKDIGPKY 352 (385)
T ss_dssp HHHHHHHHHHHTTT-CCEESSCSSSTTBCSSCEEEECSC--------------HHHHHHHHHHTTEECBCCCCTTTGGGE
T ss_pred HHHHHHHHHHHHhc-CceecccCcccccCCceEEEecCC--------------HHHHHHHHHHCCeEEeCCCCcccCCCE
Confidence 8888888888 765 322111000 234555665532 345788889999998864 256
Q ss_pred EEEe-cC---CCCCHHHHHHHHHHHHHHHHH
Q 013204 409 IMMS-PP---FIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 409 iR~~-~~---~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+|++ .+ +.++++++++++++|++++++
T Consensus 353 iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~ 383 (385)
T 2bkw_A 353 IRIGHMGVTACNKNLPYMKNCFDLIKLALQR 383 (385)
T ss_dssp EEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred EEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence 9999 43 357999999999999988754
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-20 Score=182.29 Aligned_cols=313 Identities=13% Similarity=0.132 Sum_probs=195.1
Q ss_pred CHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceE
Q 013204 51 EPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKF 130 (447)
Q Consensus 51 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~v 130 (447)
+|++.+++.+.+....+. .+.+...++++.+++++ +.+++++++||++|++.+++.+. -.++++|
T Consensus 35 ~~~~~~a~~~~~~~~~~~-----~~~~~~~~l~~~la~~~---~~~~~i~~~~gt~al~~~l~~~~-------~~~gd~v 99 (391)
T 3dr4_A 35 DGNERDYVLECMDTTWIS-----SVGRFIVEFEKAFADYC---GVKHAIACNNGTTALHLALVAMG-------IGPGDEV 99 (391)
T ss_dssp CSSHHHHHHHHHHHTCCS-----SCSHHHHHHHHHHHHHH---TCSEEEEESSHHHHHHHHHHHHT-------CCTTCEE
T ss_pred CHHHHHHHHHHHHcCCcc-----CCChHHHHHHHHHHHHh---CCCcEEEeCCHHHHHHHHHHHcC-------CCCcCEE
Confidence 367788888777653211 24677889999999997 34489999999999999999771 1345789
Q ss_pred EEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC-CcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 013204 131 IARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP-HYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFI 209 (447)
Q Consensus 131 i~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi 209 (447)
++..+.|++........+.... .++.. +.+. .+ ++++++.+. +++++|+
T Consensus 100 l~~~~~~~~~~~~~~~~g~~~~-------------~~~~~~~~~~-----~d--------~~~l~~~~~----~~~~~v~ 149 (391)
T 3dr4_A 100 IVPSLTYIASANSVTYCGATPV-------------LVDNDPRTFN-----LD--------AAKLEALIT----PRTKAIM 149 (391)
T ss_dssp EEESSSCTHHHHHHHHTTCEEE-------------EECBCTTTCS-----BC--------GGGSGGGCC----TTEEEEC
T ss_pred EECCCchHHHHHHHHHCCCEEE-------------EEecCccccC-----cC--------HHHHHHhcC----CCceEEE
Confidence 9999999998655543322111 11111 0000 00 244555443 3566666
Q ss_pred EccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec----ccCCCcccceeEE
Q 013204 210 AEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA----KALSSAYMPIGAI 285 (447)
Q Consensus 210 ~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s----K~l~gg~~~~g~~ 285 (447)
++ + ..|...+ +++|.++|++||+++|+||+|+ +|... .-...+..+|++++| |++++| +.|++
T Consensus 150 ~~--n-~tG~~~~----~~~i~~l~~~~~~~li~D~a~~-~g~~~---~~~~~~~~~di~~~S~s~~K~l~~g--~gg~~ 216 (391)
T 3dr4_A 150 PV--H-LYGQICD----MDPILEVARRHNLLVIEDAAEA-VGATY---RGKKSGSLGDCATFSFFGNAIITTG--EGGMI 216 (391)
T ss_dssp CB--C-GGGCCCC----HHHHHHHHHHTTCEEEEECTTC-TTCEE---TTEETTSSSSEEEEECBTTSSSCCB--SCEEE
T ss_pred EE--C-CCCChhh----HHHHHHHHHHcCCEEEEECccc-ccceE---CCeeecccCCEEEEECCCCCcCCcC--CeEEE
Confidence 43 3 3455554 9999999999999999999997 32221 111223335788777 999874 56777
Q ss_pred EeC-hhHHHHhhhccCCC-------CccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCce
Q 013204 286 LVS-PEVSEVIHSQSNTL-------GSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPII 357 (447)
Q Consensus 286 ~~~-~~~~~~~~~~~~~~-------~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~ 357 (447)
+.+ +++.+.+....... .....+..+..+++.++.++..++.+ ++..++.+++.+++++.|+++ +..+.
T Consensus 217 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~-g~~~~ 293 (391)
T 3dr4_A 217 TTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERV--DEHLAARERVVGWYEQKLARL-GNRVT 293 (391)
T ss_dssp EESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHGGG-TTSEE
T ss_pred EECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-Ccccc
Confidence 765 45665554221100 00011223455666666555544433 446677888888888888876 33332
Q ss_pred ee-----EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-------------------------C
Q 013204 358 GE-----IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-------------------------D 407 (447)
Q Consensus 358 ~~-----~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-------------------------~ 407 (447)
.. ....+.++.+.+...... ....+.+.|.++||.++++. .
T Consensus 294 ~~~~~~~~~~~~~~~~i~~~~~~~~---------~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 364 (391)
T 3dr4_A 294 KPHVALTGRHVFWMYTVRLGEGLST---------TRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVD 364 (391)
T ss_dssp CCCCCTTSCCCCSSEEEEECSSCSS---------CHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHH
T ss_pred CcCCCCCCcceeEEEEEEECCccch---------hHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhC
Confidence 22 112222344555431110 14568899999999988652 3
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 408 NIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 408 ~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
.+|++++..+|++||++++++|++++
T Consensus 365 ~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 365 GLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred eEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 58999999999999999999998754
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-19 Score=175.37 Aligned_cols=321 Identities=15% Similarity=0.109 Sum_probs=182.2
Q ss_pred CCHHHHHHHHHHHhc-CCcccc--cCcCCChHHHHHH----HHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhc
Q 013204 50 SEPRLVAAATAQLNT-LPFYHS--FWNRTTKPSLDLA----KELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNAL 122 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~-~~~~~~--~~~~~~~~~~~l~----~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~ 122 (447)
.+|++++++.+++.+ ....+. ..........+++ +++++.+. .+.+++ ++++|++|++.+++.+.
T Consensus 37 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g-~~~~~i-~~~sGt~a~~~~~~~~~------ 108 (417)
T 3n0l_A 37 TLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFN-CKFANV-QPNSGSQANQGVYAALI------ 108 (417)
T ss_dssp CCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT-CSEEEC-CCSSHHHHHHHHHHHHS------
T ss_pred CCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhC-CCCcce-EeccHHHHHHHHHHHhc------
Confidence 489999999988843 211111 1111223333333 36666653 333344 55677999999999773
Q ss_pred CCCCcceEEEEcCCCccchhh--hhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhh
Q 013204 123 GRPNKKKFIARQKSYHGSTLI--AASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE 200 (447)
Q Consensus 123 ~~~~~~~vi~~~~~yhg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~ 200 (447)
..++.|++.+++|++.... .....+... ....++....+. .++++|++.+...
T Consensus 109 --~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~----------~~~~~~~~~~~~-------------~d~~~l~~~i~~~ 163 (417)
T 3n0l_A 109 --NPGDKILGMDLSHGGHLTHGAKVSSSGKMY----------ESCFYGVELDGR-------------IDYEKVREIAKKE 163 (417)
T ss_dssp --CTTCEEEEECC----------------CCS----------EEEEECCCTTSS-------------CCHHHHHHHHHHH
T ss_pred --CCCCEEEecccccccccchhhhhhhhccee----------eeEeccCCCCCC-------------cCHHHHHHHHHhc
Confidence 3457899999999875321 111111100 011111111100 1147788887642
Q ss_pred CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-CCCccccccccccCCCCCCeeeec--ccCCC
Q 013204 201 GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-AFGRLGTMFGCDKYSIKPDLVSFA--KALSS 277 (447)
Q Consensus 201 ~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-g~g~~g~~~~~~~~~~~~d~v~~s--K~l~g 277 (447)
++++|++.+.+ .|...+ +++|.++|++||+++|+||+|. |+...|... .... ..|++++| |+++|
T Consensus 164 ---~~~~v~~~~~~--~G~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~--~~~~-~~di~~~s~sK~l~g 231 (417)
T 3n0l_A 164 ---KPKLIVCGASA--YARVID----FAKFREIADEIGAYLFADIAHIAGLVVAGEHP--SPFP-YAHVVSSTTHKTLRG 231 (417)
T ss_dssp ---CCSEEEECCSS--CCSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSC--CCTT-TCSEEEEESSTTTCS
T ss_pred ---CCeEEEECCcc--cCccCC----HHHHHHHHHHcCCEEEEECccchhhhhcccCC--Cccc-cceEEEeeCccccCC
Confidence 23455654433 365555 9999999999999999999974 321112110 0001 35888765 99965
Q ss_pred cccceeEEEeC-hhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHhHhhccC
Q 013204 278 AYMPIGAILVS-PEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQDGVKAFSD 353 (447)
Q Consensus 278 g~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~ 353 (447)
+++|+++++ +++++.+... ..++.+.++++..+++..+++..... ++..+++.++.+++.+.|++. +
T Consensus 232 --~~~G~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g 302 (417)
T 3n0l_A 232 --PRGGIIMTNDEELAKKINSA------IFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR-K 302 (417)
T ss_dssp --CSCEEEEESCHHHHHHHHHH------HTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred --CCeeEEEECCHHHHHHHhhh------hCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-C
Confidence 568999998 7888877532 12222334456666666666655322 345667777778888888763 2
Q ss_pred CCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-----------CEEEEecCCC----CC
Q 013204 354 SPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-----------DNIMMSPPFI----MS 418 (447)
Q Consensus 354 ~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-----------~~iR~~~~~~----~t 418 (447)
..+.. ....+.++.+.+..... ....+.+.|.++||.+.+.. +.+|++++.. ++
T Consensus 303 ~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 371 (417)
T 3n0l_A 303 FKLVS-DGTDNHLVLMSFLDREF----------SGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFK 371 (417)
T ss_dssp CEEGG-GSCSSSEEEEECTTSSS----------CHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCC
T ss_pred ceecc-CCCCceEEEEEcccCCC----------CHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCC
Confidence 22111 01223355555543211 14457788889999987431 4599986532 67
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013204 419 PEEVDELISKYGKALKA 435 (447)
Q Consensus 419 ~e~i~~~~~~l~~~l~~ 435 (447)
+++|++++++|++++++
T Consensus 372 ~~~i~~~~~~l~~~l~~ 388 (417)
T 3n0l_A 372 EKEMEIVSNYIADILDD 388 (417)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999999864
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=7.3e-20 Score=174.32 Aligned_cols=274 Identities=14% Similarity=0.067 Sum_probs=176.9
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhc---ccCCccccCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAAS---LSGLPALHQKF 157 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~---~~~~~~~~~~~ 157 (447)
++++++++++. .++.++++||++|+..+++.+. .++++|++.++.||+....... ..|...
T Consensus 2 ~l~~~la~~~g---~~~~i~~~sG~~a~~~~~~~~~--------~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~----- 65 (331)
T 1pff_A 2 ALEGKIAKLEH---AEACAATASGMGAIAASVWTFL--------KAGDHLISDDCLYGCTHALFEHQLRKFGVEV----- 65 (331)
T ss_dssp HHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHHC--------CTTCEEEEESCCCHHHHHHHHTHHHHTTCEE-----
T ss_pred hHHHHHHHHhC---CCeEEEeCChHHHHHHHHHHhc--------CCCCEEEEcCCCcchHHHHHHHHHHhcCCEE-----
Confidence 46778888763 2367788889999999999653 2347899999999887433321 112111
Q ss_pred CCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHh-
Q 013204 158 DLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKK- 236 (447)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~- 236 (447)
..++..+ ++++++.+. +++++|+++++++++|.+.+ +++|.++|++
T Consensus 66 -------~~~~~~d------------------~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~ 112 (331)
T 1pff_A 66 -------DFIDMAV------------------PGNIEKHLK----PNTRIVYFETPANPTLKVID----IEDAVKQARKQ 112 (331)
T ss_dssp -------EEECTTS------------------TTHHHHTCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHTTS
T ss_pred -------EEeCCCC------------------HHHHHHhhc----CCCeEEEEECCCCCcCcccC----HHHHHHHHhhh
Confidence 1111111 255666553 35788889999888888876 9999999999
Q ss_pred cCCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCcccc-eeEEEeCh-hHHHHhhhccCCCCccCcC-CCC
Q 013204 237 YDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSAYMP-IGAILVSP-EVSEVIHSQSNTLGSFSHG-FTY 311 (447)
Q Consensus 237 ~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg~~~-~g~~~~~~-~~~~~~~~~~~~~~~~~~~-~t~ 311 (447)
||+++|+||+|+. |..... . .+ ..|++ +++|.+++++.+ +|++++++ ++++.+.. .... .+.
T Consensus 113 ~~~~li~D~a~~~-~~~~~~--~-~~--~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~-------~~~~~~~~ 179 (331)
T 1pff_A 113 KDILVIVDNTFAS-PILTNP--L-DL--GVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQ-------GIKDITGA 179 (331)
T ss_dssp SSCEEEEECTTTH-HHHCCG--G-GG--TCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHT-------CCCCCCCC
T ss_pred cCCEEEEECCCcc-cccCCh--h-hc--CCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHH-------HHHhhcCC
Confidence 9999999999973 222111 1 12 35665 578999876567 78999998 88888863 2233 345
Q ss_pred CCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc-----------cCCCcee----eEeeeeeEEEEEeecCCC
Q 013204 312 SGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-----------SDSPIIG----EIRGTGLILGTEFADNKS 376 (447)
Q Consensus 312 ~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l-----------~~~~~~~----~~~~~g~~~~i~~~~~~~ 376 (447)
..+++++.++.++++.+.. ..+...++.+.+.+.+++. .+.+.+. ..++.+.++.+.+.+
T Consensus 180 ~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--- 254 (331)
T 1pff_A 180 IISPHDAWLITRGTLTLDM--RVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDG--- 254 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS---
T ss_pred CCCHHHHHHHHcCcchHHH--HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC---
Confidence 6778887776667764321 1222333333333333221 1111110 113456777776641
Q ss_pred CCCCCCCCcchHHHHHHHHHHcCceEEee-------------------------------CCEEEEecCCCCCHHHHHHH
Q 013204 377 PNEPFPPEWGIGAYFGAQCEKHGMLVRVS-------------------------------GDNIMMSPPFIMSPEEVDEL 425 (447)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------------------------------g~~iR~~~~~~~t~e~i~~~ 425 (447)
...+.+.|.++||++... .+.+|++++..+++++|+.+
T Consensus 255 -----------~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l 323 (331)
T 1pff_A 255 -----------LEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDL 323 (331)
T ss_dssp -----------HHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHH
T ss_pred -----------HHHHHHHHHhCCCceeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHH
Confidence 234677888899976432 25799999999999999999
Q ss_pred HHHHHHH
Q 013204 426 ISKYGKA 432 (447)
Q Consensus 426 ~~~l~~~ 432 (447)
++.|++.
T Consensus 324 ~~~l~~~ 330 (331)
T 1pff_A 324 KQALDLV 330 (331)
T ss_dssp HHHHHTC
T ss_pred HHHHHHh
Confidence 9998754
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-20 Score=182.36 Aligned_cols=315 Identities=12% Similarity=0.030 Sum_probs=186.1
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcce
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 129 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~ 129 (447)
.+|++.+++.+.+.... .++.+...++++++++.+ +.+..++++||++|+..+++.+... +++.
T Consensus 27 ~~p~v~~ai~~~~~~~~------~~~~~~~~~l~~~la~~~---~~~~~i~~~~g~~a~~~a~~~~~~~-------g~~~ 90 (359)
T 3pj0_A 27 VLTEALQNIDDNLESDI------YGNGAVIEDFETKIAKIL---GKQSAVFFPSGTMAQQIALRIWADR-------KENR 90 (359)
T ss_dssp HHHHHTTTSCTTCBCCB------TTBSHHHHHHHHHHHHHH---TCSEEEEESCHHHHHHHHHHHHHHH-------HTCC
T ss_pred CCHHHHHHHHhhcccCc------ccCCHHHHHHHHHHHHHh---CCCcEEEeCCHHHHHHHHHHHHHhc-------CCCc
Confidence 36777777766333211 224567889999999987 3345677799999999999987533 2334
Q ss_pred EEEEcCCCccchh--hhh-cccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEE
Q 013204 130 FIARQKSYHGSTL--IAA-SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIA 206 (447)
Q Consensus 130 vi~~~~~yhg~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a 206 (447)
+|+.++.+|.+.. ... ...|... ..++.++ +. . +++++++. .++++
T Consensus 91 vvi~~~~~~~~~~~~~~~~~~~g~~~------------~~v~~~~-~~-----~--------d~~~l~~~-----~~~~~ 139 (359)
T 3pj0_A 91 RVAYHPLSHLEIHEQDGLKELQQITP------------LLLGTAN-QL-----L--------TIDDIKSL-----REPVS 139 (359)
T ss_dssp EEEECTTCHHHHSSTTHHHHHHCCEE------------EECSCTT-SC-----C--------CHHHHHTC-----SSCCS
T ss_pred EEEEeccceeeehhcchHHHhcCceE------------EecCCcC-CC-----c--------CHHHHHhc-----cCCce
Confidence 6666777765432 111 1122211 1111100 00 0 13566654 23567
Q ss_pred EEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCC--ccccccccccCCCCCCee--eecccCCCcccce
Q 013204 207 AFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG--RLGTMFGCDKYSIKPDLV--SFAKALSSAYMPI 282 (447)
Q Consensus 207 ~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g--~~g~~~~~~~~~~~~d~v--~~sK~l~gg~~~~ 282 (447)
+|++++.++..|..+++.+++++|.++|++||++||+||+|..+. ..+.. ...+....|++ ++||+++++ .+
T Consensus 140 ~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~sK~~~~~-~g- 215 (359)
T 3pj0_A 140 SVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKS--AEEICALFDSVYVSFYKGIGGI-AG- 215 (359)
T ss_dssp EEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCC--HHHHHTTCSEEEEESSSTTCCS-SC-
T ss_pred EEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCC--HHHhhccCCEEEEeccccCCCc-ce-
Confidence 777777654443366788999999999999999999999875221 11111 10111234665 688998875 34
Q ss_pred eEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEee
Q 013204 283 GAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRG 362 (447)
Q Consensus 283 g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~ 362 (447)
|++++++++++.+.... ....+.++..++.+ +++.++++.. .+..++..++.+++.+.|+++.+..+. ....
T Consensus 216 g~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~-~a~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~ 287 (359)
T 3pj0_A 216 AILAGNDDFVQEAKIWK----RRYGGDLISLYPYI-LSADYYFEKR--IGKMAEYFEAAKGLAERFNSCSGVKTV-PEVP 287 (359)
T ss_dssp EEEEECHHHHHHHHHHH----HHTTCCCSCCHHHH-HHHHHHHHHH--GGGHHHHHHHHHHHHHHHHTSTTEEEE-SSSC
T ss_pred EEEECCHHHHHHHHHHH----HHhCCCcchhHHHH-HHHHHHHHHH--HHHhHHHHHHHHHHHHHHhhCCCceee-ccCC
Confidence 78889999988875311 11122233334444 3344556543 233455677778888888775221110 0123
Q ss_pred eeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-------CEEEEecC---CCCCHHHHHHHHHHHHHH
Q 013204 363 TGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-------DNIMMSPP---FIMSPEEVDELISKYGKA 432 (447)
Q Consensus 363 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-------~~iR~~~~---~~~t~e~i~~~~~~l~~~ 432 (447)
.+.++.+.+..... .....+.+.|.++||++.++. ..+|++.. ...+.+++++++++|.+.
T Consensus 288 ~~~~~~~~~~~~~~---------~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 288 VSNMFHVYFENSAD---------EIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp SSSEEEEEESSCHH---------HHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred cceEEEEEecCccc---------hhHHHHHHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 45555666643210 013567888999999988652 35888643 346899999999998765
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.9e-19 Score=172.43 Aligned_cols=318 Identities=11% Similarity=0.093 Sum_probs=196.2
Q ss_pred CHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceE
Q 013204 51 EPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKF 130 (447)
Q Consensus 51 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~v 130 (447)
+|++++++.+++...... ..+.+...++++.+++++. .++.++++||++|++.+++.+. . .++++|
T Consensus 16 ~~~~~~a~~~~l~~~~~~----~~~~~~~~~l~~~la~~~~---~~~~i~~~sGt~al~~~l~~l~------~-~~gd~V 81 (388)
T 1b9h_A 16 DDAERNGLVRALEQGQWW----RMGGDEVNSFEREFAAHHG---AAHALAVTNGTHALELALQVMG------V-GPGTEV 81 (388)
T ss_dssp CHHHHHHHHHHHHTSCCB----TTTCSHHHHHHHHHHHHTT---CSEEEEESCHHHHHHHHHHHTT------C-CTTCEE
T ss_pred CHHHHHHHHHHHHcCCee----ecCCHHHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHcC------C-CCcCEE
Confidence 389999999998764221 2245678899999999973 2356677778999999999761 1 234789
Q ss_pred EEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCc-ccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 013204 131 IARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHY-WRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFI 209 (447)
Q Consensus 131 i~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi 209 (447)
++..+.||+........ |... ..++.... +. .++++|++.+. +++++|+
T Consensus 82 i~~~~~~~~~~~~~~~~-g~~~------------~~v~~~~~~~~-------------~d~~~l~~~i~----~~~~~v~ 131 (388)
T 1b9h_A 82 IVPAFTFISSSQAAQRL-GAVT------------VPVDVDAATYN-------------LDPEAVAAAVT----PRTKVIM 131 (388)
T ss_dssp EEESSSCTHHHHHHHHT-TCEE------------EEECBCTTTCC-------------BCHHHHHHHCC----TTEEEEC
T ss_pred EECCCccHHHHHHHHHc-CCEE------------EEEecCCCcCC-------------CCHHHHHHhcC----cCceEEE
Confidence 99999999986544332 2211 11111100 00 01367777664 3466666
Q ss_pred EccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-CCCccccccccccCCCCCCeeeec--ccCCCcccceeEEE
Q 013204 210 AEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-AFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMPIGAIL 286 (447)
Q Consensus 210 ~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-g~g~~g~~~~~~~~~~~~d~v~~s--K~l~gg~~~~g~~~ 286 (447)
|++++ |.+.+ +++|.++|++||+++|+||+|+ |....|.. ...++ ..++.+|| |.++|| ++|+++
T Consensus 132 --~~n~t-G~~~~----l~~i~~la~~~~~~li~D~a~~~g~~~~~~~--~~~~~-~i~~~S~s~~K~l~g~--~~G~~~ 199 (388)
T 1b9h_A 132 --PVHMA-GLMAD----MDALAKISADTGVPLLQDAAHAHGARWQGKR--VGELD-SIATFSFQNGKLMTAG--EGGAVV 199 (388)
T ss_dssp --CBCGG-GCCCC----HHHHHHHHHHHTCCBCEECTTCTTCEETTEE--GGGSS-SCEEEECCTTSSSCSS--SCEEEE
T ss_pred --EeCCc-cCcCC----HHHHHHHHHHcCCEEEEecchhcCCccCCee--ccccc-ceEEEEccCCCcccCC--CeEEEE
Confidence 66654 55554 8999999999999999999998 23222221 12222 13344555 677664 689999
Q ss_pred eChh-H--HHHhhhccCC-----CCcc---CcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCC
Q 013204 287 VSPE-V--SEVIHSQSNT-----LGSF---SHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSP 355 (447)
Q Consensus 287 ~~~~-~--~~~~~~~~~~-----~~~~---~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~ 355 (447)
++++ + ++.+...... ...+ ..+.++..+++.++++.+.++.++ +..++.+++.+++.+.|+++++..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~l~--~~~~~~~~~~~~l~~~L~~~~~~~ 277 (388)
T 1b9h_A 200 FPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLD--EQIAVRDERWTLLSRLLGAIDGVV 277 (388)
T ss_dssp ECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTSTTCE
T ss_pred ECCHHHHHHHHHHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCCCcc
Confidence 8875 6 5555321100 0001 112233456777666655555443 355677777888888887763222
Q ss_pred ceee----EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-------------------------
Q 013204 356 IIGE----IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG------------------------- 406 (447)
Q Consensus 356 ~~~~----~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g------------------------- 406 (447)
.... .+..+.++.+.+..... .....+.+.|.++||.++++.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (388)
T 1b9h_A 278 PQGGDVRADRNSHYMAMFRIPGLTE---------ERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARR 348 (388)
T ss_dssp ECCCCTTCCBCCCSEEEEECTTCCH---------HHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHT
T ss_pred ccCCCcCCCccceEEEEEEeCCcCc---------ccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccC
Confidence 1111 01224566666643100 014568889999999987531
Q ss_pred ---------CEEEEecCCCC-CHHHHHHHHHHHHHHHHH
Q 013204 407 ---------DNIMMSPPFIM-SPEEVDELISKYGKALKA 435 (447)
Q Consensus 407 ---------~~iR~~~~~~~-t~e~i~~~~~~l~~~l~~ 435 (447)
+.+|++....+ |++||+++++.|++++++
T Consensus 349 ~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 349 CPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR 387 (388)
T ss_dssp CHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 14899988888 999999999999988754
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-19 Score=173.81 Aligned_cols=253 Identities=11% Similarity=0.016 Sum_probs=162.4
Q ss_pred CCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh---hcccCC
Q 013204 74 RTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA---ASLSGL 150 (447)
Q Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~---~~~~~~ 150 (447)
.+.+...++++++++++. .+++++++||++|+..+++.+. .++++|++.++.||+..... ....|.
T Consensus 56 ~~~~~~~~l~~~la~~~g---~~~~i~~~sG~~ai~~~~~~~~--------~~gd~vl~~~~~y~~~~~~~~~~~~~~g~ 124 (389)
T 3acz_A 56 LGNPTVEQFEEMVCSIEG---AAGSAAFGSGMGAISSSTLAFL--------QKGDHLIAGDTLYGCTVSLFTHWLPRFGI 124 (389)
T ss_dssp TCCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHTTTC--------CTTCEEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred CCChHHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHHh--------CCCCEEEEeCCCchHHHHHHHHHHHHcCC
Confidence 356778899999999873 3478889999999999998652 33578999999999864332 111221
Q ss_pred ccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHH
Q 013204 151 PALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKV 230 (447)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l 230 (447)
. +..++.. +++++++.+. +++++|++|++++.+|.+.+ +++|
T Consensus 125 ~------------~~~v~~~------------------d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i 166 (389)
T 3acz_A 125 E------------VDLIDTS------------------DVEKVKAAWK----PNTKMVYLESPANPTCKVSD----IKGI 166 (389)
T ss_dssp E------------EEEECTT------------------CHHHHHHTCC----TTEEEEEEESSCTTTCCCCC----HHHH
T ss_pred E------------EEEECCC------------------CHHHHHHhcC----CCCeEEEEECCCCCCCeecC----HHHH
Confidence 1 1112211 1366666554 36789999999888888876 9999
Q ss_pred HHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCcccce-eEEEeCh-hHHHHhhhccCCCCccC
Q 013204 231 QAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSAYMPI-GAILVSP-EVSEVIHSQSNTLGSFS 306 (447)
Q Consensus 231 ~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg~~~~-g~~~~~~-~~~~~~~~~~~~~~~~~ 306 (447)
.++|++||+++|+||+|+++ ..+.+ .+..+|++ +++|.+++++.++ |++++++ ++++.+... .
T Consensus 167 ~~~~~~~~~~livD~~~~~~-~~~~~-----~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~-------~ 233 (389)
T 3acz_A 167 AVVCHERGARLVVDATFTSP-CFLKP-----LELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFY-------R 233 (389)
T ss_dssp HHHHHHHTCEEEEECTTTCT-TTCCG-----GGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHH-------H
T ss_pred HHHHHHcCCEEEEECCCccc-cccCc-----cccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHH-------H
Confidence 99999999999999999854 22222 12457888 5789999866787 9999998 888777532 1
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhcc-----------CCCcee----eEeeeeeEEEEEe
Q 013204 307 HGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFS-----------DSPIIG----EIRGTGLILGTEF 371 (447)
Q Consensus 307 ~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~-----------~~~~~~----~~~~~g~~~~i~~ 371 (447)
.......++..+.++++.++.+. ...++..++.+.+.+.|++.. .++... ..++.|.++.+.+
T Consensus 234 ~~~g~~~~~~~~~~~~~~l~~l~--~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l 311 (389)
T 3acz_A 234 KDAGSLMAPMDAFLCARGMKTLP--IRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEM 311 (389)
T ss_dssp HHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEE
T ss_pred HhcCCCCCHHHHHHHHcCccHHH--HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEE
Confidence 11123357777777777775432 123344444555555554421 111110 0134577777777
Q ss_pred ecCCCCCCCCCCCcchHHHHHHHHHHcCceEEe
Q 013204 372 ADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV 404 (447)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~ 404 (447)
.. .....+.+.+.|+++..
T Consensus 312 ~~--------------~~~~~~~l~~~~i~~~~ 330 (389)
T 3acz_A 312 KS--------------FEAAKKLMEHLKVCTLA 330 (389)
T ss_dssp SS--------------HHHHHHHHTTCSSSEEB
T ss_pred CC--------------HHHHHHHHHhCCCcEEC
Confidence 53 12345566677877654
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-19 Score=180.42 Aligned_cols=344 Identities=13% Similarity=0.034 Sum_probs=200.8
Q ss_pred CHHHHHHHHHHHhcCC----cccccCcCCChHHHHHHHHHHHhcC--cCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCC
Q 013204 51 EPRLVAAATAQLNTLP----FYHSFWNRTTKPSLDLAKELLEMFT--ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGR 124 (447)
Q Consensus 51 ~p~v~~a~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~ 124 (447)
+.++.+++.+.+.+.. ..++...+..+....+++.+.+... +..++++++++|+++|+..+++++. .
T Consensus 103 P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~-------~ 175 (498)
T 3ihj_A 103 PEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILV-------S 175 (498)
T ss_dssp CHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHC-------C
T ss_pred CHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHc-------C
Confidence 4455577776666522 1222223344556666666665531 2357899999999999999999763 1
Q ss_pred CC---cceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhC
Q 013204 125 PN---KKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEG 201 (447)
Q Consensus 125 ~~---~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~ 201 (447)
++ ++.|++..+.|+.+.......+.... .+++.....|. .++++|++.+....
T Consensus 176 ~gd~~~d~Vlv~~p~y~~~~~~~~~~g~~~v-------------~~~~~~~~~~~-----------~d~~~le~~l~~~~ 231 (498)
T 3ihj_A 176 GGGKSRTGVMIPIPQYPLYSAVISELDAIQV-------------NYYLDEENCWA-----------LNVNELRRAVQEAK 231 (498)
T ss_dssp CCGGGSEEEEEEESCCTHHHHHHHHTTCEEE-------------EEECBGGGTTB-----------CCHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEeCCCchhHHHHHHHcCCEEE-------------EeeccccccCC-----------CCHHHHHHHHHhhh
Confidence 22 35899999999887654443222111 11111000000 01478888887532
Q ss_pred CC-cEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc-cc-cccc----CC----CCCCe--
Q 013204 202 PE-TIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT-MF-GCDK----YS----IKPDL-- 268 (447)
Q Consensus 202 ~~-~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~-~~-~~~~----~~----~~~d~-- 268 (447)
.. ++++|++...++.+| .+.+.+.+++|.++|++||+++|+||+|..+...+. .+ .+.. .+ -...+
T Consensus 232 ~~~~~k~i~l~np~NPTG-~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~ 310 (498)
T 3ihj_A 232 DHCDPKVLCIINPGNPTG-QVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELAS 310 (498)
T ss_dssp TTSEEEEEEEESSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEE
T ss_pred ccCCCeEEEEECCCCCCC-CcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEE
Confidence 22 344444444444455 456788899999999999999999999987644332 11 1111 00 01122
Q ss_pred -eeecccCCC-cccceeEEE---eChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHH-----------HHh-hh
Q 013204 269 -VSFAKALSS-AYMPIGAIL---VSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALK-----------IYK-ER 331 (447)
Q Consensus 269 -v~~sK~l~g-g~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~-----------~~~-~~ 331 (447)
-+|||.+.| .++++|+++ .++++++.+... . ....+.+.+++.++.++++ .++ ..
T Consensus 311 ~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~-------~-~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~ 382 (498)
T 3ihj_A 311 FHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKL-------L-SVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKE 382 (498)
T ss_dssp EEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHH-------H-HHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHH
T ss_pred EeccccccccCcccceEEEEEecCCHHHHHHHHHH-------H-hccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHH
Confidence 268999942 238999998 588888887642 1 1234456667666555542 121 13
Q ss_pred cHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEE-EEEeecCCCCCC--CCCCCcchHHH-HHHHHHHcCceEEeeC-
Q 013204 332 NIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLIL-GTEFADNKSPNE--PFPPEWGIGAY-FGAQCEKHGMLVRVSG- 406 (447)
Q Consensus 332 ~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~-~i~~~~~~~~~~--~~~~~~~~~~~-~~~~l~~~Gi~~~~~g- 406 (447)
...+.++++.+.+.+.|+++ +.+......|.++ .+.+..+..... .... ...... +.+.|.++||++.++.
T Consensus 383 ~~~~~l~~~~~~l~~~L~~~---~g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g-~~~~~~~~~~ll~~~gI~v~pG~~ 458 (498)
T 3ihj_A 383 SVLGNLAKKAKLTEDLFNQV---PGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQ-MAPDMFYCMKLLEETGICVVPGSG 458 (498)
T ss_dssp HHHHHHHHHHHHHHHHHHTS---TTEECCCCCBSSEECCEECCCHHHHHHHHHTT-SCHHHHHHHHHHHHHCBCCEEGGG
T ss_pred HHHHHHHHHHHHHHHHHhcC---CCcEecCCCeEEEEEEeccCchhhhHHHHhcC-CCcHHHHHHHHHHHCCEEEEeCcc
Confidence 45567777788888888765 3344444455443 334431100000 0000 001122 3455667899998741
Q ss_pred -------CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 013204 407 -------DNIMMSPPFIMSPEEVDELISKYGKALKATEERV 440 (447)
Q Consensus 407 -------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~ 440 (447)
..+|++. .++++++++++++|.+++++++++.
T Consensus 459 f~~~~~~~~~Ris~--~~~~e~l~~~i~~L~~~~~~~~~~~ 497 (498)
T 3ihj_A 459 FGQREGTYHFRMTI--LPPVEKLKTVLQKVKDFHINFLEKY 497 (498)
T ss_dssp TCCCTTCCBEEEEC--CSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCCEEEEEe--CCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3699994 6899999999999999999887653
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-19 Score=176.41 Aligned_cols=281 Identities=16% Similarity=0.122 Sum_probs=182.4
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhh---hhcccCCc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLI---AASLSGLP 151 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~---~~~~~~~~ 151 (447)
..+...++++.+++++. .+++++++||++|+..+++.+. .+++.|++.++.|++.... .....|..
T Consensus 60 ~~~~~~~l~~~ia~~~g---~~~~i~~~~g~~ai~~~~~~l~--------~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~ 128 (404)
T 1e5e_A 60 GNPTVSNLEGKIAFLEK---TEACVATSSGMGAIAATVLTIL--------KAGDHLISDECLYGCTHALFEHALTKFGIQ 128 (404)
T ss_dssp CCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHHC--------CTTCEEEEESCCCHHHHHHHHTHHHHTTCE
T ss_pred cChHHHHHHHHHHHHhC---CCcEEEeCChHHHHHHHHHHHh--------CCCCEEEEeCCCchhHHHHHHHHHHHcCCE
Confidence 45667789999999873 3478999999999999998653 3347899999999876431 12112211
Q ss_pred cccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHH
Q 013204 152 ALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 231 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~ 231 (447)
+..++..+ ++++++.+. +++++|+++++++.+|.+.+ +++|.
T Consensus 129 ------------~~~v~~~d------------------~~~l~~~i~----~~t~~v~l~~p~NptG~v~~----l~~i~ 170 (404)
T 1e5e_A 129 ------------VDFINTAI------------------PGEVKKHMK----PNTKIVYFETPANPTLKIID----MERVC 170 (404)
T ss_dssp ------------EEEECTTS------------------TTHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHH
T ss_pred ------------EEEECCCC------------------HHHHHHhcC----CCCcEEEEECCCCCCCcccC----HHHHH
Confidence 11122111 266776664 35778888888888887775 99999
Q ss_pred HHHHh-cCCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCcccce-eEEEeChhHHH-HhhhccCCCCccC
Q 013204 232 AVVKK-YDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSAYMPI-GAILVSPEVSE-VIHSQSNTLGSFS 306 (447)
Q Consensus 232 ~l~~~-~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg~~~~-g~~~~~~~~~~-~~~~~~~~~~~~~ 306 (447)
++|++ ||+++|+||+|+.+... .+. + + ..|++ ++||.++++++++ |++++++++++ .+... .
T Consensus 171 ~la~~~~~~~li~De~~~~~~~~-~~~--~-~--~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~-------~ 237 (404)
T 1e5e_A 171 KDAHSQEGVLVIADNTFCSPMIT-NPV--D-F--GVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVG-------I 237 (404)
T ss_dssp HHHHTSTTCEEEEECTTTCTTTC-CGG--G-G--TCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTC-------C
T ss_pred HHHHhhcCCEEEEECCCchhhhC-Ccc--c-c--CCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHH-------H
Confidence 99999 99999999999865321 121 1 2 35666 5789999866787 99999999877 77531 2
Q ss_pred cCC-CCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhcc-----------CCCcee----eEeeeeeEEEEE
Q 013204 307 HGF-TYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFS-----------DSPIIG----EIRGTGLILGTE 370 (447)
Q Consensus 307 ~~~-t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~-----------~~~~~~----~~~~~g~~~~i~ 370 (447)
... ....+++++.++.++++.+ +...++..++.+.+.+.|++.. ..+.+. ..++.|.++.++
T Consensus 238 ~~~~g~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~ 315 (404)
T 1e5e_A 238 KDITGSVISPHDAWLITRGLSTL--NIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFI 315 (404)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEE
T ss_pred HhCCCCCCCHHHHHHHHHhHhHH--HHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEE
Confidence 222 3456788888887777643 1223333444444444444321 111110 023457888777
Q ss_pred eecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-------------------------------CCEEEEecCCCCCH
Q 013204 371 FADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-------------------------------GDNIMMSPPFIMSP 419 (447)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------------------------------g~~iR~~~~~~~t~ 419 (447)
+... .....+.+.+.||+.... .+.+|+++..
T Consensus 316 ~~~~-------------~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~---- 378 (404)
T 1e5e_A 316 LKSG-------------FEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI---- 378 (404)
T ss_dssp ETTH-------------HHHHHHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----
T ss_pred eCCC-------------HHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC----
Confidence 6431 123455666778754421 2569999665
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013204 420 EEVDELISKYGKALKAT 436 (447)
Q Consensus 420 e~i~~~~~~l~~~l~~~ 436 (447)
|+++++++.|+++++.+
T Consensus 379 e~~~~li~~l~~al~~~ 395 (404)
T 1e5e_A 379 EDADELIADFKQGLDAL 395 (404)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 89999999999988754
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.2e-19 Score=171.74 Aligned_cols=317 Identities=14% Similarity=0.060 Sum_probs=196.9
Q ss_pred CCHHHHHHHHHHHhcCC--cccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCc
Q 013204 50 SEPRLVAAATAQLNTLP--FYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNK 127 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~ 127 (447)
.+|++.+++.+.+.+.. ..+.. ....+...++.+++++.+...+.+++++++||++|+..+++.+. ..
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~---------~~ 84 (362)
T 3ffr_A 15 LYPTVRQHMITALDEKIGVISHRS-KKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCV---------EK 84 (362)
T ss_dssp CCTTHHHHHHHHHHTTTTTSCTTS-HHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHC---------SS
T ss_pred CCHHHHHHHHHHhcCCccCcCCCC-HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhcc---------CC
Confidence 57899999988876533 11110 01124456777888888643345789999999999999999762 22
Q ss_pred ceEEEEcCCCccchhh-hhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEE
Q 013204 128 KKFIARQKSYHGSTLI-AASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIA 206 (447)
Q Consensus 128 ~~vi~~~~~yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a 206 (447)
++++..+.+++.... .....|... ..++.+..+. .+ +++++ . .++++
T Consensus 85 -~~i~~~~~~~~~~~~~~~~~~g~~~------------~~v~~~~~~~-----~d--------~~~l~-----~-~~~~~ 132 (362)
T 3ffr_A 85 -KSFHCVNGSFSKRFYEFAGELGREA------------YKEEAAFGKG-----FY--------PADIT-----V-PADAE 132 (362)
T ss_dssp -EEEEEECSHHHHHHHHHHHHTTCEE------------EEEECCTTCC-----CC--------GGGCC-----C-CTTCC
T ss_pred -cEEEEcCcHHHHHHHHHHHHhCCCe------------EEEecCCCCC-----CC--------HHHHh-----c-cCCcc
Confidence 666666666553221 111112111 1112111110 00 13444 1 23566
Q ss_pred EEEEccccCCCCCccCChhHHHHHHHHHHhc-CCEEEEehhhcCCCccccccccccCCCCCCeeee--cccCCCccccee
Q 013204 207 AFIAEPVIGAGGVIPPPATYFEKVQAVVKKY-DILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF--AKALSSAYMPIG 283 (447)
Q Consensus 207 ~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~-g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~--sK~l~gg~~~~g 283 (447)
+|+++++++.+|.+.+ +++|.++|++| |+++|+||+|+ ++... . ... ..|++++ +|.++++ .++|
T Consensus 133 ~v~~~~~~nptG~~~~----l~~i~~la~~~p~~~li~D~a~~-~~~~~--~--~~~--~~d~~~~s~~K~~~~~-~G~g 200 (362)
T 3ffr_A 133 IICLTHNETSSGVSMP----VEDINTFRDKNKDALIFVDAVSS-LPYPK--F--DWT--KIDSVFFSVQKCFGLP-AGLG 200 (362)
T ss_dssp EEEEESEETTTTEECC----HHHHTTSGGGSTTSEEEEECTTT-TTSSC--C--CTT--SCSEEEEETTSTTCCC-SCCE
T ss_pred EEEEEcCCCCcceeCC----HHHHHHHHHhCCCCEEEEecccc-cCCcc--c--Chh--HCcEEEEecccccCCC-CceE
Confidence 7777777778887776 99999999999 99999999987 32211 1 111 1677754 5999855 4678
Q ss_pred EEEeChhHHHHhhhccC--CCCcc-----------C-cCCCCCCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHH
Q 013204 284 AILVSPEVSEVIHSQSN--TLGSF-----------S-HGFTYSGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQD 346 (447)
Q Consensus 284 ~~~~~~~~~~~~~~~~~--~~~~~-----------~-~~~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~ 346 (447)
++++++++++.+..... ....+ . ....++.+..++.++.++++.+.. ++..++.+++.+++.+
T Consensus 201 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~ 280 (362)
T 3ffr_A 201 VWILNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINT 280 (362)
T ss_dssp EEEEEHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred EEEECHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 89999988776653210 00000 0 011345567777777777876554 3456777778888888
Q ss_pred hHhhccCCCcee--eEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-----CCEEEEecCCCCCH
Q 013204 347 GVKAFSDSPIIG--EIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-----GDNIMMSPPFIMSP 419 (447)
Q Consensus 347 ~L~~l~~~~~~~--~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----g~~iR~~~~~~~t~ 419 (447)
.|++++...... .....+.++.+.+.. . ...+.+.|.++||.+.++ ++.+|+++...+++
T Consensus 281 ~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-~------------~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~~~~~ 347 (362)
T 3ffr_A 281 YIESSKVFSFGVEDAKLRSMTTIVANTTM-L------------PGEINKILEPFDMAVGAGYGSKKETQIRIANFPAHSL 347 (362)
T ss_dssp HHHHCSSEEESSSCGGGBCSSEEEEEESS-C------------HHHHHHHHGGGTEEEEECSGGGTTTEEEEECCTTSCH
T ss_pred HHHHccCceeccCChhhcCCceEEEecCC-C------------HHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCH
Confidence 887763221111 001123445555543 1 456889999999999864 36799999988999
Q ss_pred HHHHHHHHHHHHHH
Q 013204 420 EEVDELISKYGKAL 433 (447)
Q Consensus 420 e~i~~~~~~l~~~l 433 (447)
+++++++++|++.+
T Consensus 348 e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 348 EQVHKLVQTLKEKI 361 (362)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-19 Score=175.93 Aligned_cols=337 Identities=12% Similarity=0.026 Sum_probs=189.8
Q ss_pred EEEecCCccccccCCCC--CHHHHHHHHHHHhc-CCcccccCcCCChHHHHHHHHHHHhcCc-----CCCCeEEE--eCC
Q 013204 34 KYLDSLAGLWCTALGGS--EPRLVAAATAQLNT-LPFYHSFWNRTTKPSLDLAKELLEMFTA-----SKMAKVFF--TNS 103 (447)
Q Consensus 34 ~~lD~~~~~~~~~lG~~--~p~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~~v~~--~~s 103 (447)
..+||+.+......++. .|.+.+++.+.... ....+.. .....++.+.+++++.. .+++++++ ++|
T Consensus 29 ~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~----~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G 104 (401)
T 7aat_A 29 KKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLP----IAGLADFTRASAELALGENSEAFKSGRYVTVQGIS 104 (401)
T ss_dssp TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCC----TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH
T ss_pred CceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCC----CCCCHHHHHHHHHHhcCCCccccccCceEEEecCc
Confidence 47888777532222321 24678877776653 2122221 12234455555555421 12678877 999
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC--cccCCCCCCC
Q 013204 104 GSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH--YWRYAHPGET 181 (447)
Q Consensus 104 GseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 181 (447)
|++|+..+++.+... . .+++.|++.+|+|+++.......+. .. ..++..+ .+.
T Consensus 105 ~~~al~~~~~~l~~~----~-~~gd~Vlv~~p~~~~~~~~~~~~g~-~~------------~~~~~~~~~~~~------- 159 (401)
T 7aat_A 105 GTGSLRVGANFLQRF----F-KFSRDVYLPKPSWGNHTPIFRDAGL-QL------------QAYRYYDPKTCS------- 159 (401)
T ss_dssp HHHHHHHHHHHHHHH----C-TTCCEEEEEESCCTTHHHHHHHTTC-EE------------EEEECEETTTTE-------
T ss_pred chHHHHHHHHHHHHh----c-cCCCEEEEcCCCchhHHHHHHHcCC-ee------------EeeeeeccccCc-------
Confidence 999999999876432 1 2247899999999887644433221 11 1111100 000
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc---ccc
Q 013204 182 EEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT---MFG 258 (447)
Q Consensus 182 ~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~---~~~ 258 (447)
.+++++++.+.+.. +.++++++...++.+| ...+.+.+++|.++|++||+++|+||+|.+++..+. ...
T Consensus 160 ------~d~~~l~~~l~~~~-~~~~~v~i~~p~NPtG-~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~ 231 (401)
T 7aat_A 160 ------LDFTGAMEDISKIP-EKSIILLHACAHNPTG-VDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWA 231 (401)
T ss_dssp ------ECHHHHHHHHTTSC-TTCEEEEESSSCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHH
T ss_pred ------cCHHHHHHHHHhCC-CCcEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHH
Confidence 01355666665433 3455666666666666 456888999999999999999999999998866442 111
Q ss_pred ccc-CCCCCCe---eeecccCCCcccceeEEEe---ChhH----HHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHH
Q 013204 259 CDK-YSIKPDL---VSFAKALSSAYMPIGAILV---SPEV----SEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKI 327 (447)
Q Consensus 259 ~~~-~~~~~d~---v~~sK~l~gg~~~~g~~~~---~~~~----~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~ 327 (447)
... .+..+++ .++||.++..++++|++++ +++. ...+.. .....+.+.+..++.++.+.++.
T Consensus 232 ~~~~~~~~~~~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~ 304 (401)
T 7aat_A 232 LRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKI-------LIRPMYSNPPMNGARIASLILNT 304 (401)
T ss_dssp HHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHH-------HHHHHHSSCCHHHHHHHHHHHHC
T ss_pred HHHHHhcCCcEEEEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHH-------HHHhccCCCChHHHHHHHHHhCC
Confidence 111 1222333 3689999854489999886 5553 333321 11111233344555544444421
Q ss_pred -------Hh-hhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeee-EEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc
Q 013204 328 -------YK-ERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGL-ILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH 398 (447)
Q Consensus 328 -------~~-~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 398 (447)
.+ -++..++++++++++.+.|+++...+.+......+. +..+.+. ...+...+.++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~ll~~~ 369 (401)
T 7aat_A 305 PELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLK---------------PEQVERLTKEF 369 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCC---------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceecCCcceEEecCCC---------------HHHHHHHHHhC
Confidence 01 133456777777888888877521111111223333 3222221 22343444678
Q ss_pred CceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 399 GMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 399 Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
||.+.+. +|++... .++++|++++++|++++
T Consensus 370 gi~v~~~---~Ris~~~-~~~~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 370 SIYMTKD---GRISVAG-VASSNVGYLAHAIHQVT 400 (401)
T ss_dssp CEECCTT---CEEEGGG-CCTTTHHHHHHHHHHHH
T ss_pred CEeccCC---CeEEecc-CChhhHHHHHHHHHHHh
Confidence 9988743 6888653 55666999999998875
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.7e-19 Score=172.01 Aligned_cols=305 Identities=14% Similarity=0.130 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEE
Q 013204 52 PRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFI 131 (447)
Q Consensus 52 p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi 131 (447)
|++.+++.+.+.... ..+.+...++++.+++++ +.+++++++||++|++.|++.+. -.++++|+
T Consensus 16 ~~v~~a~~~~~~~~~------~~~~~~~~~l~~~la~~~---~~~~~~~~~sGt~al~~al~~~~-------~~~gd~Vi 79 (367)
T 3nyt_A 16 DKIDAGIQRVLRHGQ------YILGPEVTELEDRLADFV---GAKYCISCANGTDALQIVQMALG-------VGPGDEVI 79 (367)
T ss_dssp HHHHHHHHHHHHHCC------CSSCHHHHHHHHHHHHHH---TCSEEEEESCHHHHHHHHHHHTT-------CCTTCEEE
T ss_pred HHHHHHHHHHHhcCC------ccCChHHHHHHHHHHHHh---CCCcEEEeCCHHHHHHHHHHHhC-------CCCcCEEE
Confidence 455555555554432 125567889999999997 34589999999999999999762 13357899
Q ss_pred EEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCc-ccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEE
Q 013204 132 ARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHY-WRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIA 210 (447)
Q Consensus 132 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~ 210 (447)
+..+.|++........+..+. .++.... +. .+ ++++++.+. +++++|++
T Consensus 80 ~~~~~~~~~~~~~~~~G~~~~-------------~~~~~~~~~~-----~d--------~~~l~~~i~----~~~~~v~~ 129 (367)
T 3nyt_A 80 TPGFTYVATAETVALLGAKPV-------------YVDIDPRTYN-----LD--------PQLLEAAIT----PRTKAIIP 129 (367)
T ss_dssp EESSSCTHHHHHHHHTTCEEE-------------EECBCTTTCS-----BC--------GGGTGGGCC----TTEEEECC
T ss_pred ECCCccHHHHHHHHHcCCEEE-------------EEecCCccCC-----cC--------HHHHHHhcC----cCCcEEEe
Confidence 999999887655443322111 1111100 00 00 255555553 36777774
Q ss_pred ccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-CCCccccccccccCCCCCCeeeec----ccCCC-cccceeE
Q 013204 211 EPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-AFGRLGTMFGCDKYSIKPDLVSFA----KALSS-AYMPIGA 284 (447)
Q Consensus 211 epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-g~g~~g~~~~~~~~~~~~d~v~~s----K~l~g-g~~~~g~ 284 (447)
+ +. .|...+ +++|.++|++||+++|+||+|+ |....|. ..+...|++++| |.+++ | . .|+
T Consensus 130 ~--~~-~G~~~~----~~~i~~la~~~~~~li~D~a~~~g~~~~~~-----~~~~~~di~~~Sf~~~K~l~~~g-~-gg~ 195 (367)
T 3nyt_A 130 V--SL-YGQCAD----FDAINAIASKYGIPVIEDAAQSFGASYKGK-----RSCNLSTVACTSFFPSAPLGCYG-D-GGA 195 (367)
T ss_dssp B--CG-GGCCCC----HHHHHHHHHHTTCCBEEECTTTTTCEETTE-----ETTSSSSEEEEECCTTSSSCCSS-C-CEE
T ss_pred e--CC-ccChhh----HHHHHHHHHHcCCEEEEECccccCCeECCe-----eccCCCCEEEEECCCCCcCCCcC-c-eeE
Confidence 3 33 344444 9999999999999999999997 2222222 122223888876 99987 5 3 677
Q ss_pred EEe-ChhHHHHhhhccCCC-----CccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhcc-CCCce
Q 013204 285 ILV-SPEVSEVIHSQSNTL-----GSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFS-DSPII 357 (447)
Q Consensus 285 ~~~-~~~~~~~~~~~~~~~-----~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~~ 357 (447)
++. ++++++.+....... .....+.++..+++.++++++.++.+ ++..++.+++.+++++.|+++. ..+..
T Consensus 196 ~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~~~~~~~~ 273 (367)
T 3nyt_A 196 IFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIF--EEEIALRQKVAAEYDLSLKQVGIGTPFI 273 (367)
T ss_dssp EEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred EEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCeeccCC
Confidence 777 467777665321100 00112346777888888888877754 3456777888888888888761 11111
Q ss_pred ee-EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-------------------------CEEEE
Q 013204 358 GE-IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-------------------------DNIMM 411 (447)
Q Consensus 358 ~~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-------------------------~~iR~ 411 (447)
.. ......++.+.+. . ...+.+.|.++||.++... ..+|+
T Consensus 274 ~~~~~~~~~~~~~~~~--~------------~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 339 (367)
T 3nyt_A 274 EVNNISVYAQYTVRMD--N------------RESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSL 339 (367)
T ss_dssp CTTEECCCSSEEEECS--S------------HHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEE
T ss_pred CCCCceeeEEEEEEeC--C------------HHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEc
Confidence 00 0111111222222 1 4568889999999876321 35899
Q ss_pred ecCCCCCHHHHHHHHHHHHHH
Q 013204 412 SPPFIMSPEEVDELISKYGKA 432 (447)
Q Consensus 412 ~~~~~~t~e~i~~~~~~l~~~ 432 (447)
......|++||+++++.+++.
T Consensus 340 p~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 340 PMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp CCCTTCCHHHHHHHHHHHHC-
T ss_pred cCCCCCCHHHHHHHHHHHHHH
Confidence 988899999999999998754
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-19 Score=177.43 Aligned_cols=319 Identities=16% Similarity=0.118 Sum_probs=178.8
Q ss_pred CCHHHHHHHHHHHhc-CCcccc---c--CcCCChHHHHHH-HHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhc
Q 013204 50 SEPRLVAAATAQLNT-LPFYHS---F--WNRTTKPSLDLA-KELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNAL 122 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~-~~~~~~---~--~~~~~~~~~~l~-~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~ 122 (447)
.||+|++++.+++.+ ....+. . .....+...+++ +++++.+. .+.+.+ ++++|++|++.+++.+.
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~v-~~~sGs~a~~~a~~~~~------ 113 (420)
T 3gbx_A 42 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFG-ADYANV-QPHSGSQANFAVYTALL------ 113 (420)
T ss_dssp CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHT-CSEEEC-CCSSHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhC-CCCcee-EecCcHHHHHHHHHHhc------
Confidence 699999999998844 211111 0 011223444444 56666652 333333 46778999999998763
Q ss_pred CCCCcceEEEEcCCCccchh-hh-hcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhh
Q 013204 123 GRPNKKKFIARQKSYHGSTL-IA-ASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE 200 (447)
Q Consensus 123 ~~~~~~~vi~~~~~yhg~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~ 200 (447)
.+++.|++.++.|++... +. ....+.... ....+....+. .++++|++.+...
T Consensus 114 --~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~----------~~~~~~~~~~~-------------~d~~~l~~~i~~~ 168 (420)
T 3gbx_A 114 --QPGDTVLGMNLAQGGHLTHGSPVNFSGKLYN----------IVPYGIDESGK-------------IDYDEMAKLAKEH 168 (420)
T ss_dssp --CTTCEEEEEEEC------------CHHHHSE----------EEEEEECTTCS-------------CCHHHHHHHHHHH
T ss_pred --CCCCEEEecchhhcceeccchhhhhccccee----------EEeccCCccCC-------------cCHHHHHHHHHhc
Confidence 345778887777755321 11 111110000 00001100000 1147788888642
Q ss_pred CCCcEEEEEEc-cccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-CCCccccccccccCCCCCCeee--ecccCC
Q 013204 201 GPETIAAFIAE-PVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-AFGRLGTMFGCDKYSIKPDLVS--FAKALS 276 (447)
Q Consensus 201 ~~~~~a~vi~e-pv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-g~g~~g~~~~~~~~~~~~d~v~--~sK~l~ 276 (447)
++++|+++ |.++ ...+ +++|+++|++||+++|+||+|. |+.+.|.... ... .+|+++ +||+++
T Consensus 169 ---~~~~v~~~~~~~~---~~~~----l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~--~~~-~~di~~~s~sK~~~ 235 (420)
T 3gbx_A 169 ---KPKMIIGGFSAYS---GVVD----WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPN--PVP-HAHVVTTTTHKTLA 235 (420)
T ss_dssp ---CCSEEEECCTTCC---SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCC--STT-TSSEEEEESSGGGC
T ss_pred ---CCeEEEEecCccC---CccC----HHHHHHHHHHcCCEEEEECCcchhceecccCCc--ccc-cCCEEEeecccCCC
Confidence 24566664 4443 3443 9999999999999999999975 4433332111 111 278887 669997
Q ss_pred CcccceeEEEeCh---hHHHHhhhccCCCCccCcCCCC-CCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHhHh
Q 013204 277 SAYMPIGAILVSP---EVSEVIHSQSNTLGSFSHGFTY-SGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQDGVK 349 (447)
Q Consensus 277 gg~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~t~-~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~ 349 (447)
| .+.|++++++ ++++.+... ...+++ ..+...++++.+++..... +++.+++.++.+++++.|+
T Consensus 236 g--~~gg~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 306 (420)
T 3gbx_A 236 G--PRGGLILAKGGDEELYKKLNSA-------VFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFL 306 (420)
T ss_dssp S--CSCEEEEESSCCHHHHHHHHHH-------HC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--CCceEEEEcCCcHHHHHHhhhh-------cCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Confidence 5 4568899987 777776531 111122 2233333333334433211 3456778888888888887
Q ss_pred hccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEe-------e----CCEEEEecCCC--
Q 013204 350 AFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV-------S----GDNIMMSPPFI-- 416 (447)
Q Consensus 350 ~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~-------~----g~~iR~~~~~~-- 416 (447)
+. +..++. -...+.++.+.+..... ....+.+.|.++||++.+ + .+.+|++++..
T Consensus 307 ~~-g~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~ 374 (420)
T 3gbx_A 307 NR-GYKVVS-GGTENHLFLLDLVDKNL----------TGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTR 374 (420)
T ss_dssp HT-TCEEGG-GSCSSSEEEEECGGGTC----------CHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHH
T ss_pred hc-CCeecc-CCCCCeEEEEEcCCCCC----------CHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcc
Confidence 64 221111 01235566666653221 144577788889999987 2 14599998755
Q ss_pred --CCHHHHHHHHHHHHHHHHH
Q 013204 417 --MSPEEVDELISKYGKALKA 435 (447)
Q Consensus 417 --~t~e~i~~~~~~l~~~l~~ 435 (447)
.++++|++++++|++++++
T Consensus 375 ~~~~~~~i~~~~~~l~~~l~~ 395 (420)
T 3gbx_A 375 RGFKEAEVKELAGWMCDVLDN 395 (420)
T ss_dssp TTCCHHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHhC
Confidence 5689999999999998854
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-19 Score=176.30 Aligned_cols=239 Identities=13% Similarity=0.085 Sum_probs=152.8
Q ss_pred cCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhc---ccC
Q 013204 73 NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAAS---LSG 149 (447)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~---~~~ 149 (447)
....+...++++++++++ +.+++++++||++|++.+++.+. ..+++||+.++.||+....... ..|
T Consensus 77 r~~~p~~~~l~~~la~~~---g~~~~~~~~sG~~Ai~~al~~l~--------~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g 145 (414)
T 3ndn_A 77 RYGNPTVSVFEERLRLIE---GAPAAFATASGMAAVFTSLGALL--------GAGDRLVAARSLFGSCFVVCSEILPRWG 145 (414)
T ss_dssp TTCCHHHHHHHHHHHHHH---TCSEEEEESSHHHHHHHHHHTTC--------CTTCEEEEESCCCHHHHHHHHTHHHHTT
T ss_pred CCCChHHHHHHHHHHHHH---CCCcEEEECCHHHHHHHHHHHHh--------CCCCEEEEcCCccchHHHHHHHHHHHcC
Confidence 346778889999999986 34689999999999999998653 3357899999999986433211 011
Q ss_pred CccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHH
Q 013204 150 LPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEK 229 (447)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~ 229 (447)
.. +..++.. +++++++.+. +++++|++|++++.+|.+.+ +++
T Consensus 146 ~~------------~~~v~~~------------------d~~~l~~ai~----~~t~~v~le~p~NptG~~~~----l~~ 187 (414)
T 3ndn_A 146 VQ------------TVFVDGD------------------DLSQWERALS----VPTQAVFFETPSNPMQSLVD----IAA 187 (414)
T ss_dssp CE------------EEEECTT------------------CHHHHHHHTS----SCCSEEEEESSCTTTCCCCC----HHH
T ss_pred cE------------EEEeCCC------------------CHHHHHHhcC----CCCeEEEEECCCCCCCcccc----HHH
Confidence 11 1222221 1367777664 35678888999888887766 999
Q ss_pred HHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcc-cceeEEEeChhHHH-HhhhccCCCCccCc
Q 013204 230 VQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAY-MPIGAILVSPEVSE-VIHSQSNTLGSFSH 307 (447)
Q Consensus 230 l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~-~~~g~~~~~~~~~~-~~~~~~~~~~~~~~ 307 (447)
|+++|++||+++|+||+|+ .+.. +....++....+.+++|.+++++ +++|+++++++.+. .+.... ...
T Consensus 188 i~~la~~~g~~livDe~~~-~~~~---~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~-----~~~ 258 (414)
T 3ndn_A 188 VTELAHAAGAKVVLDNVFA-TPLL---QQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLM-----RHT 258 (414)
T ss_dssp HHHHHHHTTCEEEEECTTT-HHHH---CCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHH-----HHH
T ss_pred HHHHHHHcCCEEEEECCCc-cccc---CCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHH-----HHc
Confidence 9999999999999999987 2211 11123343333335789998844 68899999988665 443210 011
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccC-----CCce----------eeEeeeeeEEEEEee
Q 013204 308 GFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD-----SPII----------GEIRGTGLILGTEFA 372 (447)
Q Consensus 308 ~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~-----~~~~----------~~~~~~g~~~~i~~~ 372 (447)
....++..++.++..++.+. ...++..++.+++.+.|++.+. +|.+ ...+|.|.++++.+.
T Consensus 259 --g~~~~~~~a~~~~~~l~~l~--~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~ 334 (414)
T 3ndn_A 259 --GPAMSAFNAWVLLKGLETLA--IRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALD 334 (414)
T ss_dssp --CCCCCHHHHHHHHHHGGGHH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEEC
T ss_pred --CCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEc
Confidence 12236666665555555332 2345555666667666665411 1110 112456889999986
Q ss_pred c
Q 013204 373 D 373 (447)
Q Consensus 373 ~ 373 (447)
.
T Consensus 335 ~ 335 (414)
T 3ndn_A 335 C 335 (414)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-19 Score=175.92 Aligned_cols=323 Identities=14% Similarity=0.080 Sum_probs=186.3
Q ss_pred CCC-EEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHH
Q 013204 31 NGK-KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEAND 109 (447)
Q Consensus 31 dg~-~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~ 109 (447)
.|+ .++|+..+.+.. .-+|++++++. .. ..+.....++++.+++.+...+.+++++++||++|+.
T Consensus 25 ~g~~~v~~~~~~~~~~---~~~~~v~~a~~----~~-------~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~ 90 (374)
T 2aeu_A 25 KGRDALYDLSGLSGGF---LIDEKDKALLN----TY-------IGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAIL 90 (374)
T ss_dssp TCGGGCEECSSCCCCC---CCCHHHHHHHT----ST-------THHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHH
T ss_pred cCccceeeecccCCCC---CCCHHHHHHHH----Hh-------cCchHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHH
Confidence 354 466876542211 25678887775 21 1122234566666666653212378999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhh--hhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLI--AASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
.+++.+ + +++|++.++.||++... .....|... ..+ .+
T Consensus 91 ~~~~~~---------~-gd~Vl~~~~~y~~~~~~~~~~~~~g~~~------------~~v--~d---------------- 130 (374)
T 2aeu_A 91 ATILAL---------K-PKKVIHYLPELPGHPSIERSCKIVNAKY------------FES--DK---------------- 130 (374)
T ss_dssp HHHHHH---------C-CSEEEEECSSSSCCTHHHHHHHHTTCEE------------EEE--SC----------------
T ss_pred HHHHhC---------C-CCEEEEecCCCCccHHHHHHHHHcCcEE------------EEe--CC----------------
Confidence 999865 2 36899999999986421 111122111 011 00
Q ss_pred HHHHHHHHHHHhhCCCcEEE-EEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCC
Q 013204 188 RLANNLEDLILKEGPETIAA-FIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKP 266 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~-vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~ 266 (447)
++++++. . +++++ |+++++++.+|. +...+++|.++|++||+++|+||+|..+ ..+...........+
T Consensus 131 --~~~l~~~-~----~~~~~~v~~~~p~nptG~---~~~~l~~i~~l~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~ 199 (374)
T 2aeu_A 131 --VGEILNK-I----DKDTLVIITGSTMDLKVI---ELENFKKVINTAKNKEAIVFVDDASGAR-VRLLFNQPPALKLGA 199 (374)
T ss_dssp --HHHHHTT-C----CTTEEEEEECBCTTSCBC---CHHHHHHHHHHHHHHTCCEEEECTTHHH-HHHHTTCCCHHHHTC
T ss_pred --HHHHHhc-C----CCccEEEEEccCCCCCCC---CcccHHHHHHHHHHcCCEEEEECCcccc-cccccccCCccccCC
Confidence 3666654 2 34567 888888777773 4566999999999999999999998643 211110000111246
Q ss_pred Ceee--ecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 013204 267 DLVS--FAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKF 344 (447)
Q Consensus 267 d~v~--~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l 344 (447)
|+++ +||.++| +++|++++++++++.+... ......+.+++.++++.++++.+.. +..++..++.+.+
T Consensus 200 di~~~S~sK~l~g--~~~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~ 269 (374)
T 2aeu_A 200 DLVVTSTDKLMEG--PRGGLLAGKKELVDKIYIE-------GTKFGLEAQPPLLAGIYRALKNFNL-ERIRKAFERAKNF 269 (374)
T ss_dssp SEEEEETTSSSSS--CSCEEEEEEHHHHHHHHHH-------HHTTTCBCCHHHHHHHHHHHHHCCH-HHHHHHHHHHHHC
T ss_pred cEEEecCcccccC--cceEEEEECHHHHHHHHHh-------hccccCCCCHHHHHHHHHHHHHHhH-HHHHHHHHHHHHH
Confidence 7774 7899875 6999999999998887642 1112335678888888888876432 1223333333333
Q ss_pred ----HHhHhh-ccCC----CceeeEeeeeeEEEEE-eecCCCCCCCCCCCcchHHHHH-HHHHHcCceEEeeC------C
Q 013204 345 ----QDGVKA-FSDS----PIIGEIRGTGLILGTE-FADNKSPNEPFPPEWGIGAYFG-AQCEKHGMLVRVSG------D 407 (447)
Q Consensus 345 ----~~~L~~-l~~~----~~~~~~~~~g~~~~i~-~~~~~~~~~~~~~~~~~~~~~~-~~l~~~Gi~~~~~g------~ 407 (447)
++.|.+ +... ++.....+.|.++... +..... ......+. +.+.++||++.++. +
T Consensus 270 ~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~--------~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~ 341 (374)
T 2aeu_A 270 DLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTIN--------IKKLIEIGFNLLKNYGIITITVAGMPGASK 341 (374)
T ss_dssp CCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHHH--------HHHHHHHHHHHHHHHCEECSTTSSSCSSCC
T ss_pred HHHHHHHHHHhhhhhhhccCcceeeCCceEEEEeeccccccc--------ccchHHHHHHHHHhCCEEEecCCCCCCCCC
Confidence 344432 2221 1222234555554332 111000 00011144 34457899987642 3
Q ss_pred EEEEecCC-CCCHHHHHHHHHHHHHHHHHH
Q 013204 408 NIMMSPPF-IMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 408 ~iR~~~~~-~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.+||+++. ..++++++++.+.|+++++++
T Consensus 342 ~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~ 371 (374)
T 2aeu_A 342 SLRIDLTSRDAERIDDNYIIKAIVESIKMA 371 (374)
T ss_dssp SEEEETTSGGGGGSCHHHHHHHHHHHHHHH
T ss_pred eEEEEcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 69999653 223334788888888777665
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.5e-18 Score=169.21 Aligned_cols=324 Identities=12% Similarity=0.108 Sum_probs=193.9
Q ss_pred CCHHHHHHHHHHHhcCCcc-cccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcc
Q 013204 50 SEPRLVAAATAQLNTLPFY-HSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKK 128 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~ 128 (447)
-+|++++++.+.+++.... +....+..+...++++.+++++ +.+++++++||++|++.+++.+. . ..++
T Consensus 14 ~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~---g~~~~i~~~~gt~al~~~~~~~~------~-~~gd 83 (418)
T 2c81_A 14 HSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFN---GVPYCVPTTSGSTALMLALEALG------I-GEGD 83 (418)
T ss_dssp CCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHH---TCSEEEEESCHHHHHHHHHHHTT------C-CTTC
T ss_pred CCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHh---CCCcEEEeCCHHHHHHHHHHHcC------C-CCcC
Confidence 3689999999998764322 2222334556888999999887 33478899999999999999762 0 2347
Q ss_pred eEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC-cccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEE
Q 013204 129 KFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH-YWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAA 207 (447)
Q Consensus 129 ~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~ 207 (447)
+|++..++|++........ |... ..++... .+. .+++++++.+. +++++
T Consensus 84 ~Vl~~~~~~~~~~~~~~~~-g~~~------------~~~~~~~~~~~-------------~d~~~l~~~i~----~~~~~ 133 (418)
T 2c81_A 84 EVIVPSLTWIATATAVLNV-NALP------------VFVDVEADTYC-------------IDPQLIKSAIT----DKTKA 133 (418)
T ss_dssp EEEEESSSCTHHHHHHHHT-TCEE------------EEECBCTTTCS-------------BCHHHHGGGCC----TTEEE
T ss_pred EEEECCCccHhHHHHHHHc-CCEE------------EEEecCCCCCC-------------cCHHHHHHhhC----CCCeE
Confidence 8999999999886554432 2211 1111110 000 01366665553 35667
Q ss_pred EEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCC-ccccccccccCCCCCCee--ee--cccCCCcccce
Q 013204 208 FIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG-RLGTMFGCDKYSIKPDLV--SF--AKALSSAYMPI 282 (447)
Q Consensus 208 vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g-~~g~~~~~~~~~~~~d~v--~~--sK~l~gg~~~~ 282 (447)
|++++ ..|...+ +++|.++|++||+++|+||+|+.+. ..+.. .+..+|++ +| +|.+++ + ++
T Consensus 134 v~~~~---~~G~~~~----~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~-----~~~~~~~~~~s~s~~K~~~~-g-~~ 199 (418)
T 2c81_A 134 IIPVH---LFGSMAN----MDEINEIAQEHNLFVIEDCAQSHGSVWNNQR-----AGTIGDIGAFSCQQGKVLTA-G-EG 199 (418)
T ss_dssp ECCBC---CTTCCCC----HHHHHHHHHHTTCEEEEECTTCTTCEETTEE-----TTSSSSEEEEECCTTSSSCS-S-SC
T ss_pred EEEeC---CcCCccc----HHHHHHHHHHCCCEEEEECcccccCccCCEe-----cccccceEEEeccCCcccCC-C-Ce
Confidence 77654 3455544 9999999999999999999998654 22221 11123554 45 899987 3 88
Q ss_pred eEEEeC-hhHHHHhhhccCCCC-----------ccCc--------CCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 013204 283 GAILVS-PEVSEVIHSQSNTLG-----------SFSH--------GFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAP 342 (447)
Q Consensus 283 g~~~~~-~~~~~~~~~~~~~~~-----------~~~~--------~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~ 342 (447)
|+++.+ +++++.+........ .+.+ +.....+++.++.+...++.+ ++..++.+++.+
T Consensus 200 g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~ 277 (418)
T 2c81_A 200 GIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQEL--DDKNAIREKNAM 277 (418)
T ss_dssp EEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 999985 777766643211100 0110 011113344433333333322 345566666777
Q ss_pred HHHHhHhhccCCCceeeEee--eee--EEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc-Cce---EEee---------
Q 013204 343 KFQDGVKAFSDSPIIGEIRG--TGL--ILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH-GML---VRVS--------- 405 (447)
Q Consensus 343 ~l~~~L~~l~~~~~~~~~~~--~g~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~---~~~~--------- 405 (447)
++++.|+++++..+.....+ ... ++.+.+.+..... .....+.+.|.++ ||. +.++
T Consensus 278 ~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~ 350 (418)
T 2c81_A 278 FLNDALSKIDGIKVMKRPPQVSRQTYYGYVFRFDPVKFGG-------LNADQFCEILREKLNMGTFYLHPPYLPVHKNPL 350 (418)
T ss_dssp HHHHHHTTSTTEEECCCCTTEEECCCSEEEEEECGGGTTT-------CCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTT
T ss_pred HHHHHhccCCCcccCCCCCCCcccccEEEEEEEccccccc-------cCHHHHHHHHHHcCCCCcccccccccccccCch
Confidence 77777766522111111111 111 3335554310000 0145688899998 999 7642
Q ss_pred ----------------------C----------CEEEEecCCCC-CHHHHHHHHHHHHHHHHHH
Q 013204 406 ----------------------G----------DNIMMSPPFIM-SPEEVDELISKYGKALKAT 436 (447)
Q Consensus 406 ----------------------g----------~~iR~~~~~~~-t~e~i~~~~~~l~~~l~~~ 436 (447)
+ +.+|++++..+ |++||++++++|+++++++
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~ 414 (418)
T 2c81_A 351 FCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARKF 414 (418)
T ss_dssp CCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTT
T ss_pred hcccccccccccccccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHhh
Confidence 1 36999999999 9999999999999987653
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.5e-18 Score=166.81 Aligned_cols=326 Identities=13% Similarity=0.116 Sum_probs=196.3
Q ss_pred CHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceE
Q 013204 51 EPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKF 130 (447)
Q Consensus 51 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~v 130 (447)
+|++.+++.+.+... ++ . ...+...++++.+++++ +.+++++++||++|++.+++.+. ..++++|
T Consensus 11 ~~~v~~a~~~~~~~~-~~-~---~~g~~~~~l~~~la~~~---~~~~v~~~~ggt~al~~~~~~l~-------~~~gd~V 75 (394)
T 1o69_A 11 GGNELKYIEEVFKSN-YI-A---PLGEFVNRFEQSVKDYS---KSENALALNSATAALHLALRVAG-------VKQDDIV 75 (394)
T ss_dssp -CCHHHHHHHHHHHT-TT-S---CTTHHHHHHHHHHHHHH---CCSEEEEESCHHHHHHHHHHHTT-------CCTTCEE
T ss_pred CHHHHHHHHHHHHcC-Cc-c---CCChHHHHHHHHHHHHh---CCCcEEEeCCHHHHHHHHHHHcC-------CCCCCEE
Confidence 477888888888653 11 1 01245788999999997 34789999999999999999761 1335789
Q ss_pred EEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEE
Q 013204 131 IARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIA 210 (447)
Q Consensus 131 i~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~ 210 (447)
++..+.|++........ |... ..++..+.+. .+++++++.+.... +++++|++
T Consensus 76 l~~~~~~~~~~~~~~~~-g~~~------------~~v~~~~~~~-------------~d~~~l~~~i~~~~-~~~~~v~~ 128 (394)
T 1o69_A 76 LASSFTFIASVAPICYL-KAKP------------VFIDCDETYN-------------IDVDLLKLAIKECE-KKPKALIL 128 (394)
T ss_dssp EEESSSCGGGTHHHHHT-TCEE------------EEECBCTTSS-------------BCHHHHHHHHHHCS-SCCCEEEE
T ss_pred EECCCccHHHHHHHHHc-CCEE------------EEEEeCCCCC-------------cCHHHHHHHHhccc-CCceEEEE
Confidence 99999999986554432 2111 1111111110 01477888776421 24567777
Q ss_pred ccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-CCCccccccccccCCCCCCeeee--cccCCCcccceeEEEe
Q 013204 211 EPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-AFGRLGTMFGCDKYSIKPDLVSF--AKALSSAYMPIGAILV 287 (447)
Q Consensus 211 epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-g~g~~g~~~~~~~~~~~~d~v~~--sK~l~gg~~~~g~~~~ 287 (447)
++. .|...+ +++|.++|++||+++|+||+|+ |+...|.... . + ...|+.++ +|.+++ .++|++++
T Consensus 129 ~~~---~G~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~-~-~-~~~~~~s~s~~K~l~~--~~~G~~~~ 196 (394)
T 1o69_A 129 THL---YGNAAK----MDEIVEICKENDIVLIEDAAEALGSFYKNKALG-T-F-GEFGVYSYNGNKIITT--SGGGMLIG 196 (394)
T ss_dssp ECG---GGCCCC----HHHHHHHHHHTTCEEEEECTTCTTCEETTEETT-S-S-SSEEEEECCTTSSSCC--SSCEEEEE
T ss_pred ECC---CCChhh----HHHHHHHHHHcCCEEEEECcCcccceeCCcccc-c-c-cCcEEEEEeCCccCCC--CCceEEEE
Confidence 763 344443 9999999999999999999998 6544442211 1 1 13677788 477765 47999999
Q ss_pred C-hhHHHHhhhccCCCC----cc---CcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceee
Q 013204 288 S-PEVSEVIHSQSNTLG----SF---SHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGE 359 (447)
Q Consensus 288 ~-~~~~~~~~~~~~~~~----~~---~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~ 359 (447)
+ +++++.+........ .+ ..+..+..+++.++.+++.++.++ +..++.+++.+++++.|+++ ..+...
T Consensus 197 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~--~~~~~~~~~~~~l~~~L~~~--~~~~~~ 272 (394)
T 1o69_A 197 KNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLE--QRVLKKREIYEWYKEFLGEY--FSFLDE 272 (394)
T ss_dssp SCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTTT--EECCCC
T ss_pred CCHHHHHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccc--ccccCC
Confidence 5 788877754211100 00 011122245666666665555443 35677788888888888764 111111
Q ss_pred Ee-eeee--EEEEEeecCC---CC-----CCCCCCC--cchHHHHHHHHHHcCceEEeeC--------------------
Q 013204 360 IR-GTGL--ILGTEFADNK---SP-----NEPFPPE--WGIGAYFGAQCEKHGMLVRVSG-------------------- 406 (447)
Q Consensus 360 ~~-~~g~--~~~i~~~~~~---~~-----~~~~~~~--~~~~~~~~~~l~~~Gi~~~~~g-------------------- 406 (447)
.. ..+. ++.+.+.... .. ...+... ......+.+.|.++||.++++.
T Consensus 273 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~ 352 (394)
T 1o69_A 273 LENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNS 352 (394)
T ss_dssp CTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHH
T ss_pred CCCCcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHH
Confidence 10 0112 2344544210 00 0000000 0024568889999999987541
Q ss_pred -----CEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 407 -----DNIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 407 -----~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
..+++.....+|++|+++++++|+++++
T Consensus 353 ~~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~ 385 (394)
T 1o69_A 353 ELFFQKGICLPSGTAMSKDDVYEISKLILKSIK 385 (394)
T ss_dssp HHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHhcCeEEccCCCCCCHHHHHHHHHHHHHHHh
Confidence 2355555677999999999999998764
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-17 Score=161.33 Aligned_cols=315 Identities=16% Similarity=0.155 Sum_probs=194.1
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcce
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 129 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~ 129 (447)
-+|++.+++.+++++..+ .+.+...++++.+++++. .+++++++||++|++.+++.++.. ...+..++++
T Consensus 13 ~~~~~~~a~~~~~~~~~~------~~~~~~~~l~~~la~~~~---~~~~i~~~sGt~a~~~al~~~~~~-~~~~~~~g~~ 82 (390)
T 3b8x_A 13 WDDLEYKAIQSVLDSKMF------TMGEYVKQYETQFAKTFG---SKYAVMVSSGSTANLLMIAALFFT-KKPRLKKGDE 82 (390)
T ss_dssp CCHHHHHHHHHHHHHTCC------SSCHHHHHHHHHHHHHHT---CSEEEEESCHHHHHHHHHHHTTSS-SSCSCCTTCE
T ss_pred CCHHHHHHHHHHHHcCCC------CCChHHHHHHHHHHHHHC---CCcEEEECCHHHHHHHHHHHHHhh-hhcCCCCcCE
Confidence 478999999998876422 246678899999999973 347899999999999999876210 0001133478
Q ss_pred EEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCc-ccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEE
Q 013204 130 FIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHY-WRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAF 208 (447)
Q Consensus 130 vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~v 208 (447)
|++..+.||+....... .|... ..++.... +. .++++|++.+. +++++|
T Consensus 83 Vi~~~~~~~~~~~~~~~-~g~~~------------~~~~~~~~~~~-------------~d~~~l~~~i~----~~~~~v 132 (390)
T 3b8x_A 83 IIVPAVSWSTTYYPLQQ-YGLRV------------KFVDIDINTLN-------------IDIESLKEAVT----DSTKAI 132 (390)
T ss_dssp EEEESSSCHHHHHHHHH-TTCEE------------EEECBCTTTCS-------------BCHHHHHHHCC----TTEEEE
T ss_pred EEECCCCcHHHHHHHHH-cCCEE------------EEEecCccccC-------------cCHHHHHHHhC----cCCeEE
Confidence 99999999988655443 22211 11111100 00 01367777664 245666
Q ss_pred EEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeecc----cCCCcccceeE
Q 013204 209 IAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAK----ALSSAYMPIGA 284 (447)
Q Consensus 209 i~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK----~l~gg~~~~g~ 284 (447)
++.+. .|...+ +++|.++|++||+++|+||+|+ +|... ....++..+|+.++|| .+++| ..|+
T Consensus 133 ~~~~~---~g~~~~----~~~i~~l~~~~~~~li~D~a~~-~g~~~---~~~~~g~~~~~~~~s~~~~k~~~~g--~gG~ 199 (390)
T 3b8x_A 133 LTVNL---LGNPNN----FDEINKIIGGRDIILLEDNCES-MGATF---NNKCAGTFGLMGTFSSFYSNHIATM--EGGC 199 (390)
T ss_dssp EEECG---GGCCCC----HHHHHHHHTTSCCEEEEECTTC-TTCEE---TTEETTSSSSEEEEECCTTSSSCSS--SCEE
T ss_pred EEECC---ccChhh----HHHHHHHHHHcCCEEEEECcCc-ccCEE---CCcccccccceEEEEccCCCCCccC--CceE
Confidence 66432 233333 9999999999999999999998 32221 1234566788888775 44332 3478
Q ss_pred EEeCh-hHHHHhhhccCCC--C-------------------cc---CcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHH
Q 013204 285 ILVSP-EVSEVIHSQSNTL--G-------------------SF---SHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNK 339 (447)
Q Consensus 285 ~~~~~-~~~~~~~~~~~~~--~-------------------~~---~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~ 339 (447)
+++++ ++.+.+....... + .+ ..+.++..+++.++++++.++.++ +..++.++
T Consensus 200 ~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~--~~~~~~~~ 277 (390)
T 3b8x_A 200 IVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLP--RFISVRRK 277 (390)
T ss_dssp EEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 88775 6655443211000 0 00 012233467888888877776553 45677788
Q ss_pred HHHHHHHhHhhccCCCceeeEeeeee--EEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-------C----
Q 013204 340 IAPKFQDGVKAFSDSPIIGEIRGTGL--ILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-------G---- 406 (447)
Q Consensus 340 ~~~~l~~~L~~l~~~~~~~~~~~~g~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------g---- 406 (447)
+.+++++.|+++++..+... ..... .+.+.+...... ....+.+.|.++||.+++. .
T Consensus 278 ~~~~l~~~L~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~---------~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~ 347 (390)
T 3b8x_A 278 NAEYFLDKFKDHPYLDVQQE-TGESSWFGFSFIIKKDSGV---------IRKQLVENLNSAGIECRPIVTGNFLKNTDVL 347 (390)
T ss_dssp HHHHHHHHHTTCSSEEECCC-CSBCCCCEEEEEECTTSCC---------CHHHHHHHHHHTTBCCBCSTTSSGGGCHHHH
T ss_pred HHHHHHHHhcCCCCcccCCC-CCCcccEEEEEEecCcCcc---------cHHHHHHHHHHCCCCeeeecCCchhhcchhh
Confidence 88888888876522111111 01122 233444321000 1456888899999987741 0
Q ss_pred -------------------CEEEEecCCCCCHHHHHHHHHHH
Q 013204 407 -------------------DNIMMSPPFIMSPEEVDELISKY 429 (447)
Q Consensus 407 -------------------~~iR~~~~~~~t~e~i~~~~~~l 429 (447)
+.+|++.+..+|++||+++++.|
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 348 KYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp TTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred hcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 14899999999999999999876
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.2e-17 Score=165.49 Aligned_cols=326 Identities=14% Similarity=0.075 Sum_probs=185.7
Q ss_pred HHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHH----HhcCCC--CcceEEEEcCCCccchhhhhcccCCcc
Q 013204 79 SLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYN----NALGRP--NKKKFIARQKSYHGSTLIAASLSGLPA 152 (447)
Q Consensus 79 ~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~----~~~~~~--~~~~vi~~~~~yhg~~~~~~~~~~~~~ 152 (447)
..++.+++++++. .+.+.++|++|||+||..|++.++.+. ...|.. ++..|++ ....|.+...+....+...
T Consensus 150 e~~~~~~la~l~g-~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~-s~~~h~s~~~~~~~~g~g~ 227 (515)
T 2jis_A 150 EEEVLRKLRALVG-WSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFT-SKECHYSIQKGAAFLGLGT 227 (515)
T ss_dssp HHHHHHHHHHHHT-CSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEE-ETTSCTHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHhC-CCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEE-CCCccHHHHHHHHHcCCCC
Confidence 4556677888774 335689999999999999999886432 111211 1124444 4455666544443322200
Q ss_pred ccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhh--CCCcEEEEEEccccCCCCCccCChhHHHHH
Q 013204 153 LHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE--GPETIAAFIAEPVIGAGGVIPPPATYFEKV 230 (447)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~a~vi~epv~~~~G~~~~~~~~l~~l 230 (447)
..+..++....++ . ++++|++.+... ....+++|+++..++..|.+.+ +++|
T Consensus 228 ---------~~v~~v~~~~~~~-----~--------d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~----l~~I 281 (515)
T 2jis_A 228 ---------DSVRVVKADERGK-----M--------VPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP----LEAI 281 (515)
T ss_dssp ---------GGEEEECBCTTSC-----B--------CHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHH
T ss_pred ---------CcEEEEecCCCCc-----C--------CHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC----HHHH
Confidence 0122233221111 0 137778777542 1225778888888777887776 9999
Q ss_pred HHHHHhcCCEEEEehhhcCCCccccccccccCCC-CCCeeee--cccCCCcccceeEEEeChh--HHHHhhhc-cCCC-C
Q 013204 231 QAVVKKYDILFIADEVICAFGRLGTMFGCDKYSI-KPDLVSF--AKALSSAYMPIGAILVSPE--VSEVIHSQ-SNTL-G 303 (447)
Q Consensus 231 ~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~-~~d~v~~--sK~l~gg~~~~g~~~~~~~--~~~~~~~~-~~~~-~ 303 (447)
.++|++||+++|+|++|+++......+.....++ .+|++++ +|.++++ .++|+++.+++ +++..... .... +
T Consensus 282 ~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p-~g~G~l~~~~~~~~~~~~~~~~~~yl~~ 360 (515)
T 2jis_A 282 ADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAG-LQCSALLLQDTSNLLKRCHGSQASYLFQ 360 (515)
T ss_dssp HHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCC-SCCEEEEESCCSCHHHHHHCC-------
T ss_pred HHHHHHcCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCC-CCeeEEEEeChHHHHHHHhcCCchhccC
Confidence 9999999999999999987655433333334455 6899887 6998877 58999998876 65542110 0000 0
Q ss_pred c-c-----CcCCC------CCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEe
Q 013204 304 S-F-----SHGFT------YSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEF 371 (447)
Q Consensus 304 ~-~-----~~~~t------~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~ 371 (447)
. . ....+ .....+.+.+++.++....-++..++..++++++.+.|+++++..++.. .....+.+.+
T Consensus 361 ~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~--~~~~~v~f~~ 438 (515)
T 2jis_A 361 QDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVME--PEFVNVCFWF 438 (515)
T ss_dssp --CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSC--CSSSEEEEEE
T ss_pred CcccccccCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC--CCeeEEEEEE
Confidence 0 0 00000 0112344444444443222234567777788888888877633222221 1122233333
Q ss_pred ecCC--C--CCCCCCC-CcchHHHHHHHHHHcCceEEe----eC--CEEEEec-CCCCCHHHHHHHHHHHHHHHHH
Q 013204 372 ADNK--S--PNEPFPP-EWGIGAYFGAQCEKHGMLVRV----SG--DNIMMSP-PFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 372 ~~~~--~--~~~~~~~-~~~~~~~~~~~l~~~Gi~~~~----~g--~~iR~~~-~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
.... . ....+.. .......+.+.+.+.|+++.. .+ +.+|+++ +..+|++||++++++|++++++
T Consensus 439 ~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 439 VPPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQD 514 (515)
T ss_dssp CCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred eCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 2110 0 0000000 000112366778889976532 12 4699999 8889999999999999887653
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-18 Score=170.10 Aligned_cols=240 Identities=15% Similarity=0.086 Sum_probs=154.3
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhh---cccCCc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAA---SLSGLP 151 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~---~~~~~~ 151 (447)
..+...++++++++++. .+..++++||++|++.+++.+. .++++||+..+.||+...... ...|..
T Consensus 56 ~~~~~~~l~~~la~~~g---~~~~v~~~sGt~A~~~~l~~~~--------~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~ 124 (421)
T 2ctz_A 56 MNPTVDVLEKRLAALEG---GKAALATASGHAAQFLALTTLA--------QAGDNIVSTPNLYGGTFNQFKVTLKRLGIE 124 (421)
T ss_dssp BCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHHC--------CTTCEEEECSCCCHHHHHHHHTHHHHTTCE
T ss_pred CChHHHHHHHHHHHHhC---CCceEEecCHHHHHHHHHHHHh--------CCCCEEEEeCCCchHHHHHHHHHHHHcCCE
Confidence 45677899999999973 3367788889999999999763 345789999999998754431 112211
Q ss_pred cccCCCCCCCCcceec-CCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHH
Q 013204 152 ALHQKFDLPAPFVLHT-DCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKV 230 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l 230 (447)
+..+ +.. +++++++.+. +++++|+++++++.+|.+.+ +++|
T Consensus 125 ------------~~~~~~~~------------------d~~~l~~~i~----~~~~~v~~~~~~n~~G~~~~----l~~i 166 (421)
T 2ctz_A 125 ------------VRFTSREE------------------RPEEFLALTD----EKTRAWWVESIGNPALNIPD----LEAL 166 (421)
T ss_dssp ------------EEECCTTC------------------CHHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHH
T ss_pred ------------EEEECCCC------------------CHHHHHHhhc----cCCeEEEEECCCCCCCcccC----HHHH
Confidence 1112 211 1367777664 36789999999999998877 9999
Q ss_pred HHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCcccceeEEEeC---hhH----HHHhhhccCC
Q 013204 231 QAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSAYMPIGAILVS---PEV----SEVIHSQSNT 301 (447)
Q Consensus 231 ~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg~~~~g~~~~~---~~~----~~~~~~~~~~ 301 (447)
.++|++||+++|+||+|+++|..+..+ +..+|++ +++|.+++++.++|+++.. +++ .+.+......
T Consensus 167 ~~~a~~~g~~livD~~~~~~g~~~~~~-----~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g 241 (421)
T 2ctz_A 167 AQAAREKGVALIVDNTFGMGGYLLRPL-----AWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPG 241 (421)
T ss_dssp HHHHHHHTCEEEEECGGGGGGTSCCGG-----GGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGG
T ss_pred HHHHHHcCCEEEEECCcccccccCCcc-----ccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccch
Confidence 999999999999999995566544332 3458988 5789999855688877764 222 2222210000
Q ss_pred CCc-----------------c--CcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeE--
Q 013204 302 LGS-----------------F--SHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI-- 360 (447)
Q Consensus 302 ~~~-----------------~--~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-- 360 (447)
... + ........+++.+++++..++.+. ...++..++.+++.+.|++. +.+..+
T Consensus 242 ~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~--~r~~~~~~~a~~l~~~L~~~---p~v~~v~~ 316 (421)
T 2ctz_A 242 YHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLS--LRAERHVENTLHLAHWLLEQ---PQVAWVNY 316 (421)
T ss_dssp GTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTC---TTEEEEEC
T ss_pred hhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcchHH--HHHHHHHHhHHHHHHHHHhC---CCeeEEEC
Confidence 000 0 000123557777777777666442 22344456777777777664 222222
Q ss_pred -----------------eeeeeEEEEEeec
Q 013204 361 -----------------RGTGLILGTEFAD 373 (447)
Q Consensus 361 -----------------~~~g~~~~i~~~~ 373 (447)
++.|.++.+.+..
T Consensus 317 p~~~~~~~~~~~~~~~~~~~g~ivsf~l~~ 346 (421)
T 2ctz_A 317 PGLPHHPHHDRAQKYFKGKPGAVLTFGLKG 346 (421)
T ss_dssp TTSTTCTTHHHHHHHHTTCCCSEEEEEETT
T ss_pred CCCCCCCCHHHHHHhccCCCceEEEEEeCC
Confidence 4678888888864
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-18 Score=169.65 Aligned_cols=356 Identities=10% Similarity=0.042 Sum_probs=192.9
Q ss_pred CCCEEEecCCccccccCCCC--CHHHHHHHHHHHhcCCc-ccccCcCCChHHHHHHHHHHHhcCc--C--CCCeEEEeCC
Q 013204 31 NGKKYLDSLAGLWCTALGGS--EPRLVAAATAQLNTLPF-YHSFWNRTTKPSLDLAKELLEMFTA--S--KMAKVFFTNS 103 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~--~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~--~--~~~~v~~~~s 103 (447)
|++..+|+.-|..-..-|.. .|.|.+|....++.... .|. +.....+|.+.+.+++.. . +.....-+.+
T Consensus 42 d~~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~----p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~g 117 (420)
T 4h51_A 42 AKGPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYL----PISGYQPFIDEAVKIIYGNTVELENLVAVQTLS 117 (420)
T ss_dssp CCSSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCC----CTTCCHHHHHHHHHHHHC---CGGGEEEEEEEH
T ss_pred CCCCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCC----CcCChHHHHHHHHHHhcCCCccccccceeeecC
Confidence 44446787666444444532 36788887766654322 122 233344555555554311 1 2223445789
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChh
Q 013204 104 GSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEE 183 (447)
Q Consensus 104 GseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (447)
||.|...++.++... ...+.+.|++.+|+|..+.......++.+...... + +. +
T Consensus 118 gtga~~~a~~~l~~~----~~~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~-----------~-~~----------~ 171 (420)
T 4h51_A 118 GTGAVSLGAKLLTRV----FDAETTPIYLSDPTWPNHYGVVKAAGWKNICTYAY-----------Y-DP----------K 171 (420)
T ss_dssp HHHHHHHHHHHHTTT----SCTTTSCEEEEESCCTHHHHHHHHTTCCCEEEEEC-----------E-EG----------G
T ss_pred chHHHHHHHHHHHHh----cCCCCCEEEEecCCchhHHHHHHHcCCeEEEeecc-----------c-cc----------c
Confidence 999998888865321 11245789999999977755544444332211000 0 00 0
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc---ccccc
Q 013204 184 EYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT---MFGCD 260 (447)
Q Consensus 184 ~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~---~~~~~ 260 (447)
....+++.+.+.+....++.+.+++..|.|++| ..++.+.+++|.++|+++++++|+||+|.+|...+. .+...
T Consensus 172 -~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG--~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~ 248 (420)
T 4h51_A 172 -TVSLNFEGMKKDILAAPDGSVFILHQCAHNPTG--VDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAAR 248 (420)
T ss_dssp -GTEECHHHHHHHHHHSCSSCEEEEESSSCTTTC--CCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHH
T ss_pred -ccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCC--CCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHH
Confidence 000012455555555444445444444555555 677999999999999999999999999999854332 11111
Q ss_pred c-CCCCCCee---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHH--H----h-
Q 013204 261 K-YSIKPDLV---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKI--Y----K- 329 (447)
Q Consensus 261 ~-~~~~~d~v---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~--~----~- 329 (447)
. ....+.++ +|||.++..++|+|++++..+..+.......+...........++..++.++...+.. + +
T Consensus 249 ~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~ 328 (420)
T 4h51_A 249 LFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEA 328 (420)
T ss_dssp HHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHH
T ss_pred hHHhhCceEEEEeccccccccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHH
Confidence 1 11122232 6899887655999999876543332211000000011112223344455444444431 0 0
Q ss_pred -hhcHHHHHHHHHHHHHHhHhhccCCCceeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeCC
Q 013204 330 -ERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGD 407 (447)
Q Consensus 330 -~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g~ 407 (447)
-+...++++++++.+.+.|+++........+ ...|.|..+.+ .....+.|.++||++.++|
T Consensus 329 ~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~GmF~~~gl----------------s~e~v~~L~e~~Vy~~~~g- 391 (420)
T 4h51_A 329 ELSAMAERIRTMRRTVYDELLRLQTPGSWEHVINQIGMFSFLGL----------------SKAQCEYCQNHNIFITVSG- 391 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHCCSSEEECCC----------------CHHHHHHHHHTTEECCTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCceEEecCc----------------CHHHHHHHHhCCEEEcCCC-
Confidence 1234456666777777777765111111111 22344432211 1224577889999887765
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013204 408 NIMMSPPFIMSPEEVDELISKYGKALKATEER 439 (447)
Q Consensus 408 ~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 439 (447)
||+.. ..+++.|+++.++|.++++++.++
T Consensus 392 --Ris~A-gl~~~ni~~~a~aI~~vvr~i~re 420 (420)
T 4h51_A 392 --RANMA-GLTHETALMLAQTINDAVRNVNRE 420 (420)
T ss_dssp --EEEGG-GCCHHHHHHHHHHHHHHHC-----
T ss_pred --EEEec-cCCHHHHHHHHHHHHHHHHHhhcC
Confidence 88843 469999999999999999887654
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.1e-17 Score=162.12 Aligned_cols=346 Identities=11% Similarity=0.012 Sum_probs=191.7
Q ss_pred CCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCC-----eEEEeCChhhHHHHHHHHHHHHHH---
Q 013204 49 GSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMA-----KVFFTNSGSEANDTQVKLVWYYNN--- 120 (447)
Q Consensus 49 ~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-----~v~~~~sGseA~~~Al~~~~~~~~--- 120 (447)
+.+|.+.+++.+++......+...........++.+++++++. .+.+ .+++++||++|+..++..++....
T Consensus 53 ~~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g-~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~ 131 (452)
T 2dgk_A 53 WDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWH-APAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRM 131 (452)
T ss_dssp CCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTT-CCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhC-CCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHH
Confidence 3578999998888764322211111122334556666777763 2332 489999999999999987754221
Q ss_pred -hcCCC-CcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC-cccCCCCCCChhHHHHHHHHHHHHHH
Q 013204 121 -ALGRP-NKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH-YWRYAHPGETEEEYSTRLANNLEDLI 197 (447)
Q Consensus 121 -~~~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~le~~l 197 (447)
..|.+ .++.||+.+ +|.....+....|... ..++... .++ . ++++|++.+
T Consensus 132 ~~~G~~~~~~~vi~~~--~h~~~~~~~~~~G~~v------------~~v~~~~~~~~-----~--------d~~~l~~~i 184 (452)
T 2dgk_A 132 EAAGKPTDKPNLVCGP--VQICWHKFARYWDVEL------------REIPMRPGQLF-----M--------DPKRMIEAC 184 (452)
T ss_dssp HHTTCCCSCCEEEESS--CCHHHHHHHHHTTCEE------------EECCCBTTBCS-----C--------CHHHHHHHC
T ss_pred HhcCCCCCCcEEEECC--CcHHHHHHHHHcCceE------------EEEecCCCCCe-----E--------CHHHHHHHH
Confidence 12211 124666644 7766544443333221 1222211 111 0 137777766
Q ss_pred HhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhc------CCEEEEehhhcCCCc--cccccccccCCCCCCee
Q 013204 198 LKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKY------DILFIADEVICAFGR--LGTMFGCDKYSIKPDLV 269 (447)
Q Consensus 198 ~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~------g~~li~DEv~~g~g~--~g~~~~~~~~~~~~d~v 269 (447)
. +.+++|++...++..|.+.+ +++|.++|++| |+++++|++|.++.. .........--...|.+
T Consensus 185 ~----~~t~~v~~~~~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~ 256 (452)
T 2dgk_A 185 D----ENTIGVVPTFGVTYTGNYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSI 256 (452)
T ss_dssp C----TTEEEEECBBSCTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEE
T ss_pred h----hCCEEEEEEcCCcCCcccCC----HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEE
Confidence 4 24566666666556777766 99999999996 999999999986532 11111111101135666
Q ss_pred eec--ccCCCcccceeEEEeChh-HH-HHhhhccCCCCccC-c-CCCCCCcHHHHHHHHHHHHHHhh---hcHHHHHHHH
Q 013204 270 SFA--KALSSAYMPIGAILVSPE-VS-EVIHSQSNTLGSFS-H-GFTYSGHPVSCAVAIEALKIYKE---RNIVEQVNKI 340 (447)
Q Consensus 270 ~~s--K~l~gg~~~~g~~~~~~~-~~-~~~~~~~~~~~~~~-~-~~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~ 340 (447)
+++ |.+.+| +++|+++.+++ .+ +.+.......+... . ....+.......+..++++.+.. ++..++..++
T Consensus 257 ~~~~hK~~~~~-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~ 335 (452)
T 2dgk_A 257 SASGHKFGLAP-LGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQV 335 (452)
T ss_dssp EEETTTTTCCC-SSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECcccccCCC-CCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 654 855455 79999999653 33 44321111111000 0 00111111122233334443332 3345666777
Q ss_pred HHHHHHhHhhccCCCceeeEe--eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEe----e----CCEEE
Q 013204 341 APKFQDGVKAFSDSPIIGEIR--GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV----S----GDNIM 410 (447)
Q Consensus 341 ~~~l~~~L~~l~~~~~~~~~~--~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~----~----g~~iR 410 (447)
.+++.+.|+++....++.... ....++.+.+....... .....+.+.|.++|+.+.. . ...+|
T Consensus 336 a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~-------~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lR 408 (452)
T 2dgk_A 336 AAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPG-------YTLYDLSERLRLRGWQVPAFTLGGEATDIVVMR 408 (452)
T ss_dssp HHHHHHHHHTTSSEEEEEECCTTTBSSEEEEEECTTCCCS-------CCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEE
T ss_pred HHHHHHHHHhCCCeEEecCCCCCCCeEEEEEEecCccccc-------CCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEE
Confidence 778888777653222221100 23455566654321000 0135688899999996432 1 13699
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 411 MSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 411 ~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
++....+|+++++++++.|+++++++++
T Consensus 409 is~~~~~t~e~id~li~~l~~~~~~~~~ 436 (452)
T 2dgk_A 409 IMCRRGFEMDFAELLLEDYKASLKYLSD 436 (452)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9988888999999999999999987765
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=170.28 Aligned_cols=232 Identities=16% Similarity=0.170 Sum_probs=153.6
Q ss_pred CCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcc----cC
Q 013204 74 RTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASL----SG 149 (447)
Q Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~----~~ 149 (447)
...+...+++++++++. +.+++++++||++|++.+++++ ..+++|++.++.||+........ .+
T Consensus 64 ~~~p~~~~l~~~la~l~---g~~~~~~~~sG~~Ai~~~~~l~---------~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g 131 (400)
T 3nmy_A 64 THNPTRFAYERCVAALE---GGTRAFAFASGMAATSTVMELL---------DAGSHVVAMDDLYGGTFRLFERVRRRTAG 131 (400)
T ss_dssp TCCHHHHHHHHHHHHHH---TCSEEEEESSHHHHHHHHHTTS---------CTTCEEEEESSCCHHHHHHHHHTHHHHHC
T ss_pred CCCHHHHHHHHHHHHHh---CCCCEEEecCHHHHHHHHHHHc---------CCCCEEEEeCCCchHHHHHHHHhhHhhcC
Confidence 46778889999999986 3447899999999999854433 33578999999998765333221 12
Q ss_pred CccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHH
Q 013204 150 LPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEK 229 (447)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~ 229 (447)
.. +..++.. +++++++.+. +++++|++|++++.+|.+.+ +++
T Consensus 132 ~~------------~~~v~~~------------------d~~~l~~~i~----~~~~~v~~e~~~np~G~~~~----l~~ 173 (400)
T 3nmy_A 132 LD------------FSFVDLT------------------DPAAFKAAIR----ADTKMVWIETPTNPMLKLVD----IAA 173 (400)
T ss_dssp CE------------EEEECTT------------------SHHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHH
T ss_pred eE------------EEEECCC------------------CHHHHHHHhc----cCCCEEEEECCCCCCCeeec----HHH
Confidence 11 1122221 1367777664 46789999999999998876 999
Q ss_pred HHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCcccceeE--EE-eChhHHHHhhhccCCCCc
Q 013204 230 VQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSAYMPIGA--IL-VSPEVSEVIHSQSNTLGS 304 (447)
Q Consensus 230 l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg~~~~g~--~~-~~~~~~~~~~~~~~~~~~ 304 (447)
|+++|++||+++|+||+|+.. ....+ ..++ +|++ +++|.++|++.++|. ++ .++++.+.+...
T Consensus 174 i~~la~~~g~~livDe~~~~~-~~~~~---~~~g--~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~------ 241 (400)
T 3nmy_A 174 IAVIARKHGLLTVVDNTFASP-MLQRP---LSLG--ADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFL------ 241 (400)
T ss_dssp HHHHHHHTTCEEEEECTTTHH-HHCCG---GGGT--CSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHH------
T ss_pred HHHHHHHcCCEEEEECCCccc-ccCCh---hhcC--CcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHH------
Confidence 999999999999999998621 11111 1123 5655 488999986556655 44 366777776532
Q ss_pred cCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeE------------------eeeeeE
Q 013204 305 FSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI------------------RGTGLI 366 (447)
Q Consensus 305 ~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------------------~~~g~~ 366 (447)
....+...+|+.++.++..++.+. ...++..++.+.+.+.|++. +.+..+ +|.|.+
T Consensus 242 -~~~~g~~~~~~~a~~~l~~l~~l~--~r~~~~~~~a~~l~~~L~~~---p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~ 315 (400)
T 3nmy_A 242 -QNSIGGVQGPFDSFLALRGLKTLP--LRMRAHCENALALAQWLETH---PAIEKVIYPGLASHPQHVLAKRQMSGFGGI 315 (400)
T ss_dssp -HHHHCCBCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTTC---TTEEEEECTTSTTSTTHHHHHHHCSSCCSE
T ss_pred -HHhcCCCCCHHHHHHHHHhHhHHH--HHHHHHHHHHHHHHHHHHcC---CCEeEEECCCCCCCcCHHHHHHhCCCCCce
Confidence 222345567888777776665432 23455566666666666543 444444 677899
Q ss_pred EEEEeec
Q 013204 367 LGTEFAD 373 (447)
Q Consensus 367 ~~i~~~~ 373 (447)
+++++..
T Consensus 316 ~~~~l~~ 322 (400)
T 3nmy_A 316 VSIVLKG 322 (400)
T ss_dssp EEEEETT
T ss_pred EEEEeCC
Confidence 9999864
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.7e-17 Score=164.72 Aligned_cols=328 Identities=14% Similarity=0.072 Sum_probs=182.5
Q ss_pred HHHHHHHHHhcCcC-CCCeEEEeCChhhHHHHHHHHHHHHHH----hcCCC-Ccc-eEEEEcCCCccchhhhhcccCCcc
Q 013204 80 LDLAKELLEMFTAS-KMAKVFFTNSGSEANDTQVKLVWYYNN----ALGRP-NKK-KFIARQKSYHGSTLIAASLSGLPA 152 (447)
Q Consensus 80 ~~l~~~l~~~~~~~-~~~~v~~~~sGseA~~~Al~~~~~~~~----~~~~~-~~~-~vi~~~~~yhg~~~~~~~~~~~~~ 152 (447)
.++.+++++++... +.+.++|++|||+||..|++.++.... ..|.. .++ .|++ ....|.+...+....+...
T Consensus 135 ~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~-s~~~h~s~~~~~~~~g~g~ 213 (504)
T 2okj_A 135 QITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFT-SEQSHYSIKKAGAALGFGT 213 (504)
T ss_dssp HHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEE-ETTSCTHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEE-CCcchHHHHHHHHHcCCCc
Confidence 34446667776422 156899999999999999998874320 11210 013 4444 4455555433332222100
Q ss_pred ccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhh--CCCcEEEEEEccccCCCCCccCChhHHHHH
Q 013204 153 LHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE--GPETIAAFIAEPVIGAGGVIPPPATYFEKV 230 (447)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~a~vi~epv~~~~G~~~~~~~~l~~l 230 (447)
..+..++....++ . ++++|++.+... ....+++|++...++..|.+.+ +++|
T Consensus 214 ---------~~v~~v~~~~~~~-----~--------d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~----l~~I 267 (504)
T 2okj_A 214 ---------DNVILIKCNERGK-----I--------IPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEI 267 (504)
T ss_dssp ---------GGEEEECBCTTSC-----B--------CHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC----HHHH
T ss_pred ---------ccEEEEecCCCCC-----C--------CHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC----HHHH
Confidence 0112233221111 0 137788777542 1225778888877777787766 9999
Q ss_pred HHHHHhcCCEEEEehhhcCCCccccccccccCCC-CCCeeeec--ccCCCcccceeEEEeCh-hHHHHhhh-ccCCCCcc
Q 013204 231 QAVVKKYDILFIADEVICAFGRLGTMFGCDKYSI-KPDLVSFA--KALSSAYMPIGAILVSP-EVSEVIHS-QSNTLGSF 305 (447)
Q Consensus 231 ~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~-~~d~v~~s--K~l~gg~~~~g~~~~~~-~~~~~~~~-~~~~~~~~ 305 (447)
.++|++||+++++|++|.++......+.....++ .+|+++++ |.++++ .++|+++.++ ++++.... ........
T Consensus 268 ~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p-~~~g~l~~~~~~~~~~~~~~~~~~l~~~ 346 (504)
T 2okj_A 268 ADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMCAGYLFQP 346 (504)
T ss_dssp HHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCCCSSSCCS
T ss_pred HHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCC-cceEEEEEECHHHHHHHhcCCCccccCC
Confidence 9999999999999999987643322222233344 58988875 988877 6899999876 46554321 11111000
Q ss_pred Cc-------------CCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEee
Q 013204 306 SH-------------GFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFA 372 (447)
Q Consensus 306 ~~-------------~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~ 372 (447)
.. ..+.....+.+.++++++..-.-++..++..++++++.+.|+++++..++........++.+.+.
T Consensus 347 ~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~ 426 (504)
T 2okj_A 347 DKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYI 426 (504)
T ss_dssp CCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEEC
T ss_pred cccccCcCCcccCCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEe
Confidence 00 00011235555555555542112335566777788888888765322222110123333344332
Q ss_pred cCCCCC-CCCCC----CcchHHHHHHHHHHcCce-EE--ee-C--CEEEEecC-CCCCHHHHHHHHHHHHHHHHH
Q 013204 373 DNKSPN-EPFPP----EWGIGAYFGAQCEKHGML-VR--VS-G--DNIMMSPP-FIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 373 ~~~~~~-~~~~~----~~~~~~~~~~~l~~~Gi~-~~--~~-g--~~iR~~~~-~~~t~e~i~~~~~~l~~~l~~ 435 (447)
...... ..-.. .......+.+.|.++|++ +. +. + +.+|+++. ..+|++||++++++|++++++
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~ 501 (504)
T 2okj_A 427 PQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQD 501 (504)
T ss_dssp CGGGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC
T ss_pred CccccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 110000 00000 001234678889999964 33 22 2 36999985 789999999999999988754
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.6e-18 Score=172.20 Aligned_cols=364 Identities=11% Similarity=0.089 Sum_probs=195.7
Q ss_pred EEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHh-cCc----CCCCeEEEeCChhhHHH
Q 013204 35 YLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEM-FTA----SKMAKVFFTNSGSEAND 109 (447)
Q Consensus 35 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~----~~~~~v~~~~sGseA~~ 109 (447)
++||+.+ ..++.+|.+++++.+.+... . |+...+..+...++++.+.+. +.. .+.++|++++|+++|+.
T Consensus 106 ~i~l~~g----~~~~~~~~~~~al~~~~~~~-~-Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~ 179 (546)
T 2zy4_A 106 SLSYVRD----QLGLDPAAFLHEMVDGILGC-N-YPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMA 179 (546)
T ss_dssp HHHHHHH----TSCCCHHHHHHHHHHHHHTC-S-CCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHH
T ss_pred hhecccC----CCCCCChHHHHHHHHhhhcC-C-CCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHH
Confidence 4555444 34567788888888877431 2 222223445555655554332 111 13579999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhccc-CCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLS-GLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (447)
.+++.+.... -. .+++.|++.+|.|+++...+.... +... ..+++.....+. .
T Consensus 180 ~~~~~l~~~~--l~-~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~------------~~v~~~~~~~~~-----------~ 233 (546)
T 2zy4_A 180 YIFESLKLNG--LL-KAGDKVAIGMPVFTPYIEIPELAQYALEE------------VAINADPSLNWQ-----------Y 233 (546)
T ss_dssp HHHHHHHHTT--SS-CTTCEEEEEESCCHHHHHHHHSTTSCCEE------------EEEECBGGGTTB-----------C
T ss_pred HHHHHhhhhh--cC-CCCCEEEEeCCCCccHHHHHHHcCCCcEE------------EEEecCcccCCC-----------C
Confidence 9998631100 01 234789999999999875543221 1111 111111000000 0
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH--HhcCCEEEEehhhcCCCccccccccccC-CCC
Q 013204 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV--KKYDILFIADEVICAFGRLGTMFGCDKY-SIK 265 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~--~~~g~~li~DEv~~g~g~~g~~~~~~~~-~~~ 265 (447)
++++|++.+. .++++|+++..++.+| .+.+.+.+++|.++| ++||+++|+||+|++|....... .... +..
T Consensus 234 d~~~l~~~~~----~~~k~v~l~~p~NPtG-~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~-~~~~~~~~ 307 (546)
T 2zy4_A 234 PDSELDKLKD----PAIKIFFCVNPSNPPS-VKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSL-FAICPENT 307 (546)
T ss_dssp CHHHHGGGGS----TTEEEEEEESSCSSSC-BCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCH-HHHCGGGE
T ss_pred CHHHHHHhhC----CCCeEEEEECCCCCCC-ccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCH-HHhCCCCE
Confidence 1355655432 2455554444455555 456788899999999 88999999999999875422111 1111 111
Q ss_pred CCeeeecccCCCcccceeEEEeChh-HHHHhhhcc------------CC----C-------------CccCcCCCCCCcH
Q 013204 266 PDLVSFAKALSSAYMPIGAILVSPE-VSEVIHSQS------------NT----L-------------GSFSHGFTYSGHP 315 (447)
Q Consensus 266 ~d~v~~sK~l~gg~~~~g~~~~~~~-~~~~~~~~~------------~~----~-------------~~~~~~~t~~~~~ 315 (447)
..+.+|||.++.+++|+|+++++++ +++.+...- .. + +.+....+.+.+.
T Consensus 308 i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~ 387 (546)
T 2zy4_A 308 LLVYSFSKYFGATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLST 387 (546)
T ss_dssp EEEEESTTTTTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCH
T ss_pred EEEEeCccccCCCCcceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCc
Confidence 2234789999754489999999875 766653100 00 0 0000111223444
Q ss_pred HHHHHH-HH-HHHHHhh-h----cHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCC--CCCCCCC----
Q 013204 316 VSCAVA-IE-ALKIYKE-R----NIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNK--SPNEPFP---- 382 (447)
Q Consensus 316 ~~~~aa-~a-~l~~~~~-~----~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~--~~~~~~~---- 382 (447)
+.+.++ +. ....+++ + ...+.++++.+.+.+.|. + ++......-|.++.+++..-. .....+.
T Consensus 388 ~~Q~a~a~~a~~all~~~~~~~~~~r~~~~~r~~~l~~~L~-~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~ 463 (546)
T 2zy4_A 388 PQQVQMALFSLFALMDEADEYKHTLKQLIRRRETTLYRELG-M---PPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAV 463 (546)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHGGGT-S---SCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC-C---CcccCCCCeeEEEEEEHHHhhcccccHHHHHHhh
Confidence 444432 11 1122221 2 233444444444444443 2 211111223445566654200 0000000
Q ss_pred CCcchHHHHHHHHHHcCceEEeeC------CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 013204 383 PEWGIGAYFGAQCEKHGMLVRVSG------DNIMMSPPFIMSPEEVDELISKYGKALKATEERVK 441 (447)
Q Consensus 383 ~~~~~~~~~~~~l~~~Gi~~~~~g------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~~ 441 (447)
........+.+.+.++||.+.|+. +.+|++.. ..+++++++++++|+++++++.++.+
T Consensus 464 ~~~~~~~~l~~ll~~~gV~v~pG~~F~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~~~~~~~ 527 (546)
T 2zy4_A 464 KQSSTGDMLFRIADETGIVLLPGRGFGSNRPSGRASLA-NLNEYEYAAIGRALRKMADELYAEYS 527 (546)
T ss_dssp HHCCHHHHHHHHHHHHSCCCEESSCTTCSSCEEEEESS-SSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccCCHHHHHHHHHHHCCEEEeCccccCCCCCeEEEEec-cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000012346677889999999862 46999964 35899999999999999988876654
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=9e-18 Score=165.41 Aligned_cols=284 Identities=16% Similarity=0.134 Sum_probs=177.2
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhh---hhcccCCc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLI---AASLSGLP 151 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~---~~~~~~~~ 151 (447)
..+...++++++++++. .++.++++||++|+..+++.+. ..+++||+.++.|++.... .+...|..
T Consensus 112 ~~~~~~~l~~~lA~l~g---~~~~v~~~sG~~Ai~~al~~l~--------~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~ 180 (445)
T 1qgn_A 112 GNPTTVVLEEKISALEG---AESTLLMASGMCASTVMLLALV--------PAGGHIVTTTDCYRKTRIFIETILPKMGIT 180 (445)
T ss_dssp CCHHHHHHHHHHHHHHT---CSEEEEESCHHHHHHHHHHHHS--------CSSCEEEEETTSCHHHHHHHHHTGGGGTCE
T ss_pred CChHHHHHHHHHHHHhC---CCcEEEeCCHHHHHHHHHHHHh--------CCCCEEEEcCCCchhHHHHHHHHHHHcCCE
Confidence 56778899999999873 2367788889999999999653 2347899999888875422 11111111
Q ss_pred cccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHH
Q 013204 152 ALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 231 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~ 231 (447)
+..++.. +++++++.+.. +++++|++|++++.+|.+.+ +++|.
T Consensus 181 ------------v~~v~~~------------------d~~~l~~ai~~---~tv~lV~le~p~NptG~v~d----l~~I~ 223 (445)
T 1qgn_A 181 ------------ATVIDPA------------------DVGALELALNQ---KKVNLFFTESPTNPFLRCVD----IELVS 223 (445)
T ss_dssp ------------EEEECSS------------------CHHHHHHHHHH---SCEEEEEEESSCTTTCCCCC----HHHHH
T ss_pred ------------EEEeCCC------------------CHHHHHHHhcc---CCCCEEEEeCCCCCCCcccC----HHHHH
Confidence 1122221 14778888763 34488999999888888876 99999
Q ss_pred HHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCcc-cceeEEEeChhHHHHhhhccCCCCccCcC
Q 013204 232 AVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSAY-MPIGAILVSPEVSEVIHSQSNTLGSFSHG 308 (447)
Q Consensus 232 ~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (447)
++|++||+++|+||+|+.. .. .......+|+++ ++|.+++++ .++|++++++++++.+.... ..
T Consensus 224 ~la~~~g~~livD~a~~~~-~~-----~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~-------~~ 290 (445)
T 1qgn_A 224 KLCHEKGALVCIDGTFATP-LN-----QKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLH-------HI 290 (445)
T ss_dssp HHHHHTTCEEEEECTTTCT-TT-----CCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHH-------HH
T ss_pred HHHHHcCCEEEEECCCccc-cc-----CCccccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHHH-------HH
Confidence 9999999999999999732 21 122344578886 679998742 35899999999888775321 11
Q ss_pred CCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCC-----Cce----------eeEeeeeeEEEEEeec
Q 013204 309 FTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-----PII----------GEIRGTGLILGTEFAD 373 (447)
Q Consensus 309 ~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~-----~~~----------~~~~~~g~~~~i~~~~ 373 (447)
.....+++.+..++..++.+. ...++..++.+++.+.|++.+.. |.. ...++.|.++.+.+..
T Consensus 291 ~g~~~~~~~a~~~~~~l~~l~--~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~ 368 (445)
T 1qgn_A 291 LGGALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDG 368 (445)
T ss_dssp HCCCCCHHHHHHHHHHGGGHH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESS
T ss_pred hCCCCCHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECC
Confidence 112346666665555555432 22344445566677777654211 100 0113467888888864
Q ss_pred CCCCCCCCCCCcchHHHHHHHHHHcCceEEe----------------------------eCCEEEEecCCCCCHHHHHHH
Q 013204 374 NKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV----------------------------SGDNIMMSPPFIMSPEEVDEL 425 (447)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~----------------------------~g~~iR~~~~~~~t~e~i~~~ 425 (447)
... ....+.+.|...++.++. ..+.||++.. .|+++.+
T Consensus 369 ~~~----------~~~~~l~~l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG----~Edid~l 434 (445)
T 1qgn_A 369 DLL----------TTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG----VEDFDDL 434 (445)
T ss_dssp CHH----------HHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC----SSCHHHH
T ss_pred CHH----------HHHHHHHhCCCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHH
Confidence 210 122333333211221110 0257999943 5689999
Q ss_pred HHHHHHHHHH
Q 013204 426 ISKYGKALKA 435 (447)
Q Consensus 426 ~~~l~~~l~~ 435 (447)
++.|+++++.
T Consensus 435 i~~L~~al~~ 444 (445)
T 1qgn_A 435 KADILQALDS 444 (445)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998864
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=9.3e-19 Score=173.72 Aligned_cols=307 Identities=18% Similarity=0.218 Sum_probs=184.3
Q ss_pred CCCHHHHHHHHHH----HhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCC
Q 013204 49 GSEPRLVAAATAQ----LNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGR 124 (447)
Q Consensus 49 ~~~p~v~~a~~~~----~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~ 124 (447)
..+|.|.++.... .+...+.++ ....+...++++++++++ +.+++++++||++|+..+++++
T Consensus 103 ~~~~~i~~a~~~~~~~~~~~~~~~Y~--~~g~~~~~~l~~~la~~~---g~~~~i~~~sGt~al~~~l~~~--------- 168 (464)
T 1ibj_A 103 AMSTPLYQTATFKQPSAIENGPYDYT--RSGNPTRDALESLLAKLD---KADRAFCFTSGMAALSAVTHLI--------- 168 (464)
T ss_dssp CSSCCCCCCSBCCCSSSSCCCSCSBT--TTCCHHHHHHHHHHHHHH---TCSEEEEESSHHHHHHHHHTTS---------
T ss_pred CCCccHHhhhhhhhhcccccCCcccc--CCCCHHHHHHHHHHHHHh---CCCeEEEECCHHHHHHHHHHHh---------
Confidence 3456666665432 122222222 224557888999999887 3458899999999998877632
Q ss_pred CCcceEEEEcCCCccchhhh---hcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhC
Q 013204 125 PNKKKFIARQKSYHGSTLIA---ASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEG 201 (447)
Q Consensus 125 ~~~~~vi~~~~~yhg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~ 201 (447)
.++++||+.++.||+..... ....|.. +..++.. +++++++.+.
T Consensus 169 ~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~------------v~~v~~~------------------d~~~l~~~i~--- 215 (464)
T 1ibj_A 169 KNGEEIVAGDDVYGGSDRLLSQVVPRSGVV------------VKRVNTT------------------KLDEVAAAIG--- 215 (464)
T ss_dssp CTTCEEEEESSCCHHHHHHHHHTSGGGTCE------------EEEECTT------------------SHHHHHHHCC---
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHHcCCE------------EEEeCCC------------------CHHHHHHHhc---
Confidence 33578999999998864221 1111111 1122221 1367777664
Q ss_pred CCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCc-
Q 013204 202 PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSA- 278 (447)
Q Consensus 202 ~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg- 278 (447)
+++++|+++++++.+|.+.+ +++|.++|++||+++|+||+|.. |..... .+ ...|++ +++|.++++
T Consensus 216 -~~tk~v~l~~p~NptG~v~~----l~~i~~la~~~gi~livDea~~~-g~~~~~--~~---~~~div~~S~sK~~~g~~ 284 (464)
T 1ibj_A 216 -PQTKLVWLESPTNPRQQISD----IRKISEMAHAQGALVLVDNSIMS-PVLSRP--LE---LGADIVMHSATKFIAGHS 284 (464)
T ss_dssp -SSEEEEEECSSCTTTCCCCC----HHHHHHHHHTTTCEEEEECTTTC-TTTCCG--GG---TTCSEEEEETTTTTTCSS
T ss_pred -cCceEEEEeCCCCCCCEeec----HHHHHHHHHHcCCEEEEECCCcc-cccCCh--hh---cCCEEEEECCcccccCCC
Confidence 46789999999888887775 99999999999999999999973 221111 12 246777 478999872
Q ss_pred ccceeEEEeCh-hHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHh-------H
Q 013204 279 YMPIGAILVSP-EVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE--RNIVEQVNKIAPKFQDG-------V 348 (447)
Q Consensus 279 ~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~--~~~~~~~~~~~~~l~~~-------L 348 (447)
++++|++++++ ++++.+... .....+..+++++.++.++++.+.. +...+....+.+++++. .
T Consensus 285 Gl~~G~l~~~~~~l~~~l~~~-------~~~~g~~~~~~~~~a~~~al~~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~ 357 (464)
T 1ibj_A 285 DVMAGVLAVKGEKLAKEVYFL-------QNSEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYY 357 (464)
T ss_dssp CCCCEEEEECSHHHHHHHHHH-------HHHTTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEEC
T ss_pred CCcEEEEEEChHHHHHHHHHH-------HHhcCCCCCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhCCCceEEEC
Confidence 36889999985 777776531 1112234567887777777653211 11122333333444321 0
Q ss_pred hhccCCCcee----eEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-------------------
Q 013204 349 KAFSDSPIIG----EIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS------------------- 405 (447)
Q Consensus 349 ~~l~~~~~~~----~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------------------- 405 (447)
..|..++.+. ..++.|.++.+.+.... ....+.+.|...|+.++.+
T Consensus 358 ~~L~~~p~~~~~~~~~~g~g~~~~~~l~~~~-----------~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~ 426 (464)
T 1ibj_A 358 AGLPDHPGHHLHFSQAKGAGSVFSFITGSVA-----------LSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPA 426 (464)
T ss_dssp TTSTTSTTHHHHTTTCSCCCSEEEEECSCHH-----------HHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCS
T ss_pred CCCCCCcchHHHhccCCCCceEEEEEECCHH-----------HHHHHHHhcCcceEeecCCCCceeeecccccccccCCH
Confidence 1122222111 12345677787763210 1234566665556554432
Q ss_pred ---------CCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 406 ---------GDNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 406 ---------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
.+.+|+++.+ |++++++++|++++++
T Consensus 427 ~~~~~~g~~~~~iRlsvg~----edi~~li~~L~~al~~ 461 (464)
T 1ibj_A 427 EVREARGLTEDLVRISAGI----EDVDDLISDLDIAFKT 461 (464)
T ss_dssp SSSSSSSCCTTCEEEECCS----SCHHHHHHHHHHHHHS
T ss_pred HHHHhcCCCcCeEEEEeCC----CCHHHHHHHHHHHHhh
Confidence 1469999765 8999999999998753
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-17 Score=163.24 Aligned_cols=282 Identities=16% Similarity=0.166 Sum_probs=174.5
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh---hcccCCc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA---ASLSGLP 151 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~---~~~~~~~ 151 (447)
..+...++++++++++. .+++++++||++|++.+++ .. ..+++||+..+.||+..... +...|.
T Consensus 53 ~~~~~~~lr~~la~~~g---~~~~i~~~sGt~a~~~al~-~~--------~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~- 119 (393)
T 1n8p_A 53 QNPNRENLERAVAALEN---AQYGLAFSSGSATTATILQ-SL--------PQGSHAVSIGDVYGGTHRYFTKVANAHGV- 119 (393)
T ss_dssp CCHHHHHHHHHHHHHTT---CSEEEEESCHHHHHHHHHH-TS--------CSSCEEEEESSCCHHHHHHHHHTSTTTCS-
T ss_pred CChhHHHHHHHHHHHhC---CCcEEEECChHHHHHHHHH-Hc--------CCCCEEEEeCCCchHHHHHHHHHHHHcCc-
Confidence 55677889999999873 3378888889999999999 42 23478999999998753221 111111
Q ss_pred cccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHH
Q 013204 152 ALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 231 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~ 231 (447)
.+..++. + + +++++.+. +++++|+++++++++|.+.+ +++|.
T Consensus 120 -----------~v~~v~~-------------~-----d-~~l~~~i~----~~t~lv~~~~~~nptG~~~~----l~~i~ 161 (393)
T 1n8p_A 120 -----------ETSFTND-------------L-----L-NDLPQLIK----ENTKLVWIETPTNPTLKVTD----IQKVA 161 (393)
T ss_dssp -----------CCEEESS-------------H-----H-HHHHHHSC----SSEEEEEECSSCTTTCCCCC----HHHHH
T ss_pred -----------EEEEeCC-------------C-----h-HHHHHhcc----cCceEEEEECCCCCcceecC----HHHHH
Confidence 1111221 1 2 45555553 36789999999999998876 99999
Q ss_pred HHHHhc----CCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCcccce-eEEEeC-hhHHHHhhhccCCCC
Q 013204 232 AVVKKY----DILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSAYMPI-GAILVS-PEVSEVIHSQSNTLG 303 (447)
Q Consensus 232 ~l~~~~----g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg~~~~-g~~~~~-~~~~~~~~~~~~~~~ 303 (447)
++|++| |+++|+||+|+.+.. .... ...+|++ +++|.++++++++ |+++++ +++++.+....
T Consensus 162 ~la~~~~~~~~~~livD~a~~~~~~-~~~~-----~~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~---- 231 (393)
T 1n8p_A 162 DLIKKHAAGQDVILVVDNTFLSPYI-SNPL-----NFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQ---- 231 (393)
T ss_dssp HHHHHHTTTTTCEEEEECTTTHHHH-CCGG-----GGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHH----
T ss_pred HHHHHhCCCCCCEEEEeCCcccccc-CCHH-----HcCCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHH----
Confidence 999999 999999999985533 2221 1236777 5789999755788 888885 78877775321
Q ss_pred ccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccC------CCcee----------eEee-e-ee
Q 013204 304 SFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD------SPIIG----------EIRG-T-GL 365 (447)
Q Consensus 304 ~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~------~~~~~----------~~~~-~-g~ 365 (447)
.......++..++++..+++.+. ...++..++.+.+.+.|++... ++.+. ..++ . |.
T Consensus 232 ---~~~g~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~ 306 (393)
T 1n8p_A 232 ---NAIGAIPSPFDAWLTHRGLKTLH--LRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGG 306 (393)
T ss_dssp ---HHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCS
T ss_pred ---HhcCCCCCHHHHHHHHhccchHH--HHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCcc
Confidence 10112335666666666665332 2234444555556665554311 11100 0123 4 77
Q ss_pred EEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee----------------------------CCEEEEecCCCC
Q 013204 366 ILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS----------------------------GDNIMMSPPFIM 417 (447)
Q Consensus 366 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----------------------------g~~iR~~~~~~~ 417 (447)
++.+.+.... .....+...+...++.++.+ .+.||++.....
T Consensus 307 i~~~~l~~~~----------~~~~~~l~~l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~ 376 (393)
T 1n8p_A 307 MISFRIKGGA----------EAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIED 376 (393)
T ss_dssp EEEEEESSCH----------HHHHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSC
T ss_pred EEEEEeCCcH----------HHHHHHHhhCCcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCC
Confidence 8888875321 01233444432222221100 256999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 013204 418 SPEEVDELISKYGKA 432 (447)
Q Consensus 418 t~e~i~~~~~~l~~~ 432 (447)
++++|+.+.++|++.
T Consensus 377 ~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 377 TDDLLEDIKQALKQA 391 (393)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999888764
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.79 E-value=5.4e-18 Score=165.74 Aligned_cols=281 Identities=14% Similarity=0.115 Sum_probs=175.4
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhh---cccCCc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAA---SLSGLP 151 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~---~~~~~~ 151 (447)
+.+...++++.+++++. .++.++++||++|+..+++ +. ..+++|++.++.|++...... ...|..
T Consensus 65 ~~p~~~~l~~~la~~~g---~~~~i~~~sG~~ai~~~~~-l~--------~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~ 132 (403)
T 3cog_A 65 GNPTRNCLEKAVAALDG---AKYCLAFASGLAATVTITH-LL--------KAGDQIICMDDVYGGTNRYFRQVASEFGLK 132 (403)
T ss_dssp -CHHHHHHHHHHHHHHT---CSEEEEESCHHHHHHHHHT-TS--------CTTCEEEEESSCCHHHHHHHHHTGGGGTCE
T ss_pred CCchHHHHHHHHHHHhC---CCcEEEECCHHHHHHHHHH-Hh--------CCCCEEEEeCCCcchHHHHHHHHHHHcCCE
Confidence 45677899999999873 2366777789999999988 42 334789999999988542211 111111
Q ss_pred cccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHH
Q 013204 152 ALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 231 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~ 231 (447)
+..++.. +++++++.+. +++++|+++++++..|.+.+ +++|.
T Consensus 133 ------------v~~v~~~------------------d~~~l~~~i~----~~t~~v~~~~p~nptG~~~~----l~~i~ 174 (403)
T 3cog_A 133 ------------ISFVDCS------------------KIKLLEAAIT----PETKLVWIETPTNPTQKVID----IEGCA 174 (403)
T ss_dssp ------------EEEECTT------------------SHHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHH
T ss_pred ------------EEEECCC------------------CHHHHHHhcC----cCCeEEEEECCCCCCCeeeC----HHHHH
Confidence 1122211 1366776664 36788888988888888776 99999
Q ss_pred HHHHhcC-CEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCc-ccceeEEEeC-hhHHHHhhhccCCCCccC
Q 013204 232 AVVKKYD-ILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSA-YMPIGAILVS-PEVSEVIHSQSNTLGSFS 306 (447)
Q Consensus 232 ~l~~~~g-~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg-~~~~g~~~~~-~~~~~~~~~~~~~~~~~~ 306 (447)
++|++|| +++|+||+|+++. ...+ .+..+|++ +++|.++|+ ..++|+++++ +++++.+... .
T Consensus 175 ~la~~~g~~~livD~~~~~~~-~~~~-----~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~-------~ 241 (403)
T 3cog_A 175 HIVHKHGDIILVVDNTFMSPY-FQRP-----LALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFL-------Q 241 (403)
T ss_dssp HHHTSSSCCEEEEECTTTCTT-TCCT-----TTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHH-------H
T ss_pred HHHHHcCCCEEEEECCCcccc-cCCc-----cccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHH-------H
Confidence 9999999 9999999998542 2222 22457877 578999873 2468999985 7887776531 1
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhh-----------ccCCCcee----eEeeeeeEEEEEe
Q 013204 307 HGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA-----------FSDSPIIG----EIRGTGLILGTEF 371 (447)
Q Consensus 307 ~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~-----------l~~~~~~~----~~~~~g~~~~i~~ 371 (447)
.......+++.+.++..+++.+. ...++..++...+.+.|++ |..++.+. ..++.|.++.+.+
T Consensus 242 ~~~g~~~~~~~~~~~~~~l~~l~--~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l 319 (403)
T 3cog_A 242 NSLGAVPSPIDCYLCNRGLKTLH--VRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYI 319 (403)
T ss_dssp HHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEE
T ss_pred HhcCCCCCHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEe
Confidence 22234567888777777776432 1223333333333333332 11222111 1234577888776
Q ss_pred ecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-------------------------------CCEEEEecCCCCCHH
Q 013204 372 ADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-------------------------------GDNIMMSPPFIMSPE 420 (447)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------------------------------g~~iR~~~~~~~t~e 420 (447)
... .....+.+.+.|++.... .+.||+++.+..+++
T Consensus 320 ~~~-------------~~~~~~~l~~~~i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d 386 (403)
T 3cog_A 320 KGT-------------LQHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEED 386 (403)
T ss_dssp SSC-------------HHHHHHHHHHCSSSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHH
T ss_pred cCC-------------HHHHHHHHHhCCcceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHH
Confidence 431 123455666777754310 257999988877777
Q ss_pred HHHHHHHHHHHHH
Q 013204 421 EVDELISKYGKAL 433 (447)
Q Consensus 421 ~i~~~~~~l~~~l 433 (447)
+|+.+.++|++++
T Consensus 387 ~i~~l~~al~~~~ 399 (403)
T 3cog_A 387 LLEDLDQALKAAH 399 (403)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 7777777766543
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-17 Score=162.76 Aligned_cols=342 Identities=11% Similarity=0.042 Sum_probs=192.4
Q ss_pred CEEEecCCccccccCCC--CCHHHHHHHHHHH-hc-CCcccccCcCCChHHHHHHHHHHHhcCc-CCCC--eEEEeCChh
Q 013204 33 KKYLDSLAGLWCTALGG--SEPRLVAAATAQL-NT-LPFYHSFWNRTTKPSLDLAKELLEMFTA-SKMA--KVFFTNSGS 105 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~-~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~--~v~~~~sGs 105 (447)
...+||..|....+=|. .++.|.+++. .+ +. ....|+...+..+....+++++...... ...+ .++.++||+
T Consensus 29 ~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~ 107 (405)
T 3k7y_A 29 EEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGT 107 (405)
T ss_dssp SSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHH
T ss_pred cCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchH
Confidence 35688876642222221 3577777766 43 22 2222222233444444444444332211 1234 468999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC--cccCCCCCCChh
Q 013204 106 EANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH--YWRYAHPGETEE 183 (447)
Q Consensus 106 eA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 183 (447)
+|+..+++++... .+ +.|++.+|+|.++.......+.... .+++.+ .+.
T Consensus 108 ~al~~~~~~l~~~------~~-d~Vlv~~P~y~~~~~~~~~~g~~~~-------------~v~~~~~~~~~--------- 158 (405)
T 3k7y_A 108 GAIFVLLEFLKML------NV-ETLYVTNPPYINHVNMIESRGFNLK-------------YINFFDYNLID--------- 158 (405)
T ss_dssp HHHHHHHHHHHTT------TC-CEEEEESSCCHHHHHHHHTTTCEEE-------------EECCEETTTTE---------
T ss_pred HHHHHHHHHHHhc------CC-CEEEEeCCCCHhHHHHHHHcCCeEE-------------EEeccccccCC---------
Confidence 9999999876511 15 8999999999888655554333221 111100 000
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEEc-cccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc---cccc
Q 013204 184 EYSTRLANNLEDLILKEGPETIAAFIAE-PVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT---MFGC 259 (447)
Q Consensus 184 ~~~~~~~~~le~~l~~~~~~~~a~vi~e-pv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~---~~~~ 259 (447)
.+++++++.+.... ..+++++. |.++.+| ..++.+.+++|.++|++|++++|.||+|.+|...+. ....
T Consensus 159 ----~d~~~l~~~l~~~~--~~~~i~l~~~~~NPTG-~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~ 231 (405)
T 3k7y_A 159 ----INYDLFLNDLRNIP--NGSSVILQISCYNPCS-VNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLI 231 (405)
T ss_dssp ----ECHHHHHHHHHHSC--SSCEEEECCSSCTTTC-CCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHH
T ss_pred ----cCHHHHHHHHHhCC--CCeEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHH
Confidence 01377777776422 23455554 4445555 567899999999999999999999999998854321 1111
Q ss_pred cc-CCCCCCee---eecccCCCcccceeEEEe---ChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHH----
Q 013204 260 DK-YSIKPDLV---SFAKALSSAYMPIGAILV---SPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIY---- 328 (447)
Q Consensus 260 ~~-~~~~~d~v---~~sK~l~gg~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~---- 328 (447)
.. ......++ +|||.++-.++|+|++++ ++++++.+...- ...........+.+++.++.++++.-
T Consensus 232 ~~~~~~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~ 308 (405)
T 3k7y_A 232 RKFEEKNIAFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNL---CFIVRKFYSSPVIHTNRILCQLLNNQNLKL 308 (405)
T ss_dssp HHHHTTTCCEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHH---HHHHHTTTSSCCHHHHHHHHHHHHCHHHHH
T ss_pred HHHHhcCCcEEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHHH---HHHHhcccCCCcHHHHHHHHHHhCCHHHHH
Confidence 11 11223333 689998843399999853 566655443100 00001112234556666665555421
Q ss_pred ---h-hhcHHHHHHHHHHHHHHhHh----hccCCCceeeEeeeee-EEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcC
Q 013204 329 ---K-ERNIVEQVNKIAPKFQDGVK----AFSDSPIIGEIRGTGL-ILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHG 399 (447)
Q Consensus 329 ---~-~~~~~~~~~~~~~~l~~~L~----~l~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 399 (447)
+ -....++++++++.+.+.|+ ++..-.........|. ++.+.+.. .+..+|.++|
T Consensus 309 ~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~----------------~~~~~L~~~g 372 (405)
T 3k7y_A 309 NWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA----------------KIAEHLKTHH 372 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG----------------GGTTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCH----------------HHHHHHHHCC
Confidence 0 02234556777777888887 6511011122234444 33333221 1234457889
Q ss_pred ceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 400 MLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 400 i~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
|++.|++ ||+.. ..++++|++++++|+++++
T Consensus 373 V~v~p~~---Ris~a-~~~~~~i~~~~~~i~~~~~ 403 (405)
T 3k7y_A 373 IYIINNG---RINVS-GITKNNVDYIADKICLSLS 403 (405)
T ss_dssp EECCTTS---EEEGG-GCCTTHHHHHHHHHHHHHH
T ss_pred EeecCCC---eEEEe-ccCHHHHHHHHHHHHHHHh
Confidence 9999865 88832 3688999999999999875
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.4e-18 Score=167.92 Aligned_cols=289 Identities=12% Similarity=0.032 Sum_probs=174.3
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 154 (447)
+.....++.+.+++ +. .+ +.+++++|+++|+..+++.+. .++++|++..++|++........+..+.+.
T Consensus 55 ~~~~~~~~~~~la~-~g-~~-~~v~~~~G~t~a~~~~~~a~~--------~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v 123 (446)
T 2x3l_A 55 PEEVILKSMKQVEK-HS-DY-DGYFLVNGTTSGILSVIQSFS--------QKKGDILMARNVHKSVLHALDISQQEGHFI 123 (446)
T ss_dssp CSSHHHHHHHHHCS-CT-TE-EEEEESSHHHHHHHHHHHTTT--------TSSSCEEECTTCCHHHHHHHHHHTCCEEEC
T ss_pred cchHHHHHHHHHHh-cC-CC-ceEEEeCCHHHHHHHHHHHhc--------CCCCEEEEecCccHHHHHHHHHcCCeEEEE
Confidence 45567788888888 73 22 578889999999999999763 345788888888877655444322222211
Q ss_pred CC-CCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHH
Q 013204 155 QK-FDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAV 233 (447)
Q Consensus 155 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l 233 (447)
.. .+........++ ++.+ + .+ ++++|++++.++ .|.+.+ +++|.++
T Consensus 124 ~~~~~~~~~~~~~~d---------------------~~~l---~---~~-~~~~v~~~~~n~-~G~~~~----l~~I~~l 170 (446)
T 2x3l_A 124 ETHQSPLTNHYNKVN---------------------LSRL---N---ND-GHKLVVLTYPNY-YGETFN----VEEVIKS 170 (446)
T ss_dssp EEEECTTTSSEEEEE---------------------C--------------CCEEEEESSCT-TSCCCC----HHHHHHH
T ss_pred eCeeccccCcCCCCC---------------------HHHH---c---CC-CceEEEEECCCC-CeEecC----HHHHHHH
Confidence 10 000000000000 1223 1 12 345666666444 676666 9999999
Q ss_pred HHhcCCEEEEehhhcC-CCccccccccccCCCCCCeeeec--ccCCCcccceeEEEeChhHHH--HhhhccCCCCccCcC
Q 013204 234 VKKYDILFIADEVICA-FGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMPIGAILVSPEVSE--VIHSQSNTLGSFSHG 308 (447)
Q Consensus 234 ~~~~g~~li~DEv~~g-~g~~g~~~~~~~~~~~~d~v~~s--K~l~gg~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~ 308 (447)
|++||+++|+||+|++ +...+...... ...+|++++| |.++++ .++|++++++++++ .+... ....
T Consensus 171 ~~~~~~~livDea~~~~~~f~~~~~~~~--~~g~Di~~~S~~K~l~~~-~g~g~l~~~~~~i~~~~~~~~------~~~~ 241 (446)
T 2x3l_A 171 LHQLNIPVLIDEAHGAHFGLQGFPDSTL--NYQADYVVQSFHKTLPAL-TMGSVLYIHKNAPYRENIIEY------LSYF 241 (446)
T ss_dssp HHHTTCCEEEECTTCTTTTSTTSCCCGG--GGTCSEEEECHHHHSSSC-TTCEEEEEETTCTTHHHHHHH------HHHH
T ss_pred HHhcCCeEEEcchhhhhhccCCCCCChH--HcCCCEEEECCccccccc-cccEEEEEcCCcCCHHHHHHH------HHHH
Confidence 9999999999999985 22222211122 2237888765 988776 57899999877643 33211 0111
Q ss_pred CCCCCcHHHHHHHHHHHHHHhhhc---HHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCc
Q 013204 309 FTYSGHPVSCAVAIEALKIYKERN---IVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEW 385 (447)
Q Consensus 309 ~t~~~~~~~~~aa~a~l~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~ 385 (447)
.+.+.+...+++..++++.++... +.++.+++.+++++. .+ .+... ..+..+.+.+...
T Consensus 242 ~~~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l~~~l~~~--g~---~~~~~--~~~~~l~i~~~~~----------- 303 (446)
T 2x3l_A 242 QTSSPSYLIMASLESAAQFYKTYDSTLFFAKRAQLIECLENK--GF---EMLQV--DDPLKLLIKYEGF----------- 303 (446)
T ss_dssp SCSSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--TC---EEEEC--SSTTEEEEECTTS-----------
T ss_pred cCCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHc--CC---EECcC--CCCeEEEEEeCCc-----------
Confidence 234456666666666677665422 566666666666665 22 11111 0122344444311
Q ss_pred chHHHHHHHHHHcCceEE-eeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 386 GIGAYFGAQCEKHGMLVR-VSGDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 386 ~~~~~~~~~l~~~Gi~~~-~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
....+.+.|.++||.+. ++.+.+|++++..+|++++ +++++|+++++++
T Consensus 304 -~~~~l~~~L~~~GI~v~~~g~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~ 353 (446)
T 2x3l_A 304 -TGHDIQNWFMNAHIYLELADDYQALAILPLWHHDDTY-LFDSLLRKIEDMI 353 (446)
T ss_dssp -CHHHHHHHHHHTTEEESEECSSCEEEECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred -CHHHHHHHHHHCCCEEEecCCCEEEEEeecCCCHHHH-HHHHHHHHHHHhh
Confidence 14568888999999997 4446799999988899999 9999999887644
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-15 Score=154.09 Aligned_cols=330 Identities=14% Similarity=0.073 Sum_probs=179.1
Q ss_pred HHHHHHHHHhcCcC-CCCeEEEeCChhhHHHHHHHHHHHHH----HhcCCC-CcceEEEEcCCCccchhhhhcccCCccc
Q 013204 80 LDLAKELLEMFTAS-KMAKVFFTNSGSEANDTQVKLVWYYN----NALGRP-NKKKFIARQKSYHGSTLIAASLSGLPAL 153 (447)
Q Consensus 80 ~~l~~~l~~~~~~~-~~~~v~~~~sGseA~~~Al~~~~~~~----~~~~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 153 (447)
.++.+++++++... +.+.++|++|||+||..|+..++... ...|.. ..+.+|+.+...|.+...+....|...
T Consensus 138 ~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~~g~g~- 216 (511)
T 3vp6_A 138 QITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGT- 216 (511)
T ss_dssp HHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCG-
T ss_pred HHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHHHcCCCC-
Confidence 34445556665322 24689999999999999999887532 122211 123344445556665544443333210
Q ss_pred cCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhh--CCCcEEEEEEccccCCCCCccCChhHHHHHH
Q 013204 154 HQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE--GPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 231 (447)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~ 231 (447)
..+..++....++ .++++|++.+... ....+.+|+++..++..|.+.+ |++|.
T Consensus 217 --------~~~~~v~~d~~~~-------------~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~----l~~I~ 271 (511)
T 3vp6_A 217 --------DNVILIKCNERGK-------------IIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIA 271 (511)
T ss_dssp --------GGEEEECBCTTSC-------------BCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCC----HHHHH
T ss_pred --------CcEEEeecCCCCc-------------cCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccccc----HHHHH
Confidence 0011222211111 1147888888642 2233678888888888887766 99999
Q ss_pred HHHHhcCCEEEEehhhcCCCccccccccccCCC-CCCeeee--cccCCCcccceeEEEeCh-hHHHHhhhc-cCCCCccC
Q 013204 232 AVVKKYDILFIADEVICAFGRLGTMFGCDKYSI-KPDLVSF--AKALSSAYMPIGAILVSP-EVSEVIHSQ-SNTLGSFS 306 (447)
Q Consensus 232 ~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~-~~d~v~~--sK~l~gg~~~~g~~~~~~-~~~~~~~~~-~~~~~~~~ 306 (447)
++|++||+++++|++|.+.......+.....|+ ..|++++ .|.++++ ...|+++.+. +++...... ........
T Consensus 272 ~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~ 350 (511)
T 3vp6_A 272 DICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMHASYLFQQD 350 (511)
T ss_dssp HHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCCCTTTCCSS
T ss_pred HHHHHcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCC-cCeEEEEEeCHHHHHHHhccCCccccCcc
Confidence 999999999999999985432222222222233 4688765 5888876 5778888755 445443211 10000000
Q ss_pred ----------cC---CCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeec
Q 013204 307 ----------HG---FTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFAD 373 (447)
Q Consensus 307 ----------~~---~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~ 373 (447)
.. .+.....+.+.+++..+....-+++.++..++.+++++.|+++++..++........++.+.+..
T Consensus 351 ~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p 430 (511)
T 3vp6_A 351 KHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIP 430 (511)
T ss_dssp CSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEEECC
T ss_pred cccccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeC
Confidence 00 00012234444444333221124456777778888888887653322221101233333444322
Q ss_pred CCCCCCCCCC-----CcchHHHHHHHHHHcCceEEe---e-C--CEEEEec-CCCCCHHHHHHHHHHHHHHHHHH
Q 013204 374 NKSPNEPFPP-----EWGIGAYFGAQCEKHGMLVRV---S-G--DNIMMSP-PFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 374 ~~~~~~~~~~-----~~~~~~~~~~~l~~~Gi~~~~---~-g--~~iR~~~-~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.......... .......+.++|+++|+++.. . + +.+|+++ +..++++||+.+++.|++.-+.+
T Consensus 431 ~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~~ 505 (511)
T 3vp6_A 431 QSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 505 (511)
T ss_dssp GGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 1100000000 000133578889999975442 1 2 3599998 67899999999999998876543
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.6e-16 Score=155.16 Aligned_cols=344 Identities=14% Similarity=0.033 Sum_probs=188.6
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC-CCC---eEEEeCChhhHHHHHHHHHHHHHH----h
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS-KMA---KVFFTNSGSEANDTQVKLVWYYNN----A 121 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~---~v~~~~sGseA~~~Al~~~~~~~~----~ 121 (447)
.+|.+.+++.+.+..............+...++.+++++++.-. ..+ ..++++||++|+..++..++.... .
T Consensus 68 ~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~ 147 (502)
T 3hbx_A 68 MEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKA 147 (502)
T ss_dssp CCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHh
Confidence 58899999988776532211110111223334556677776321 022 345699999999999887653321 1
Q ss_pred cCCC-CcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCc-ccCCCCCCChhHHHHHHHHHHHHHHHh
Q 013204 122 LGRP-NKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHY-WRYAHPGETEEEYSTRLANNLEDLILK 199 (447)
Q Consensus 122 ~~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~le~~l~~ 199 (447)
.|.. .+..|++-++. |.+........|... ..++.... +. . ++++|++.+.
T Consensus 148 ~G~~~~~~~vi~~~~~-h~s~~~~~~~~G~~~------------~~v~~~~~~~~-----~--------d~~~l~~~i~- 200 (502)
T 3hbx_A 148 EGKPVDKPNIVTGANV-QVCWEKFARYFEVEL------------KEVKLSEGYYV-----M--------DPQQAVDMVD- 200 (502)
T ss_dssp TTCCCSCCEEEEETTC-CHHHHHHHHHTTCEE------------EEECCBTTBCS-----C--------CHHHHHHHCC-
T ss_pred cCCCCCCcEEEEcCCc-hHHHHHHHHHcCcee------------EEEecCCCcCc-----C--------CHHHHHHHHh-
Confidence 1322 22356665544 454433333333221 12222110 11 0 1366776664
Q ss_pred hCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhc------CCEEEEehhhcCCCc--cccccccccCCCCCCeeee
Q 013204 200 EGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKY------DILFIADEVICAFGR--LGTMFGCDKYSIKPDLVSF 271 (447)
Q Consensus 200 ~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~------g~~li~DEv~~g~g~--~g~~~~~~~~~~~~d~v~~ 271 (447)
+ .+.+|+++..++..|.+.+ +++|.++|++| |+++++|++|.++.. ..............|.+++
T Consensus 201 --~-~t~~v~~~~~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~ 273 (502)
T 3hbx_A 201 --E-NTICVAAILGSTLNGEFED----VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINV 273 (502)
T ss_dssp --T-TEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEE
T ss_pred --h-CCEEEEEecCCCCCCcccC----HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCCCCceEEEE
Confidence 3 4556665555555577766 99999999999 999999999986531 0111111111113566654
Q ss_pred --cccCCCcccceeEEEeC-hhHH-HHhhhccCCCCccCcC--CCCCCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHH
Q 013204 272 --AKALSSAYMPIGAILVS-PEVS-EVIHSQSNTLGSFSHG--FTYSGHPVSCAVAIEALKIYKE---RNIVEQVNKIAP 342 (447)
Q Consensus 272 --sK~l~gg~~~~g~~~~~-~~~~-~~~~~~~~~~~~~~~~--~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~ 342 (447)
.|.+.++ .++|+++.+ ++.+ +.+.......+..... ..++.....+.+..++++.+.. .+..++..++.+
T Consensus 274 s~hK~l~~p-~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~ 352 (502)
T 3hbx_A 274 SGHKYGLVY-AGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMI 352 (502)
T ss_dssp ETTTTTCCC-SSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccCCC-CCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666555 688887775 4443 2221111111110000 1122222233444445554433 334566677778
Q ss_pred HHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-------C-CEEEEecC
Q 013204 343 KFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-------G-DNIMMSPP 414 (447)
Q Consensus 343 ~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------g-~~iR~~~~ 414 (447)
++++.|+++....++.. .....++.+.+...... ....+.+.|.++|+++... + ..+|++..
T Consensus 353 ~l~~~L~~~~~~~~~~~-~~~~~~v~f~~~~~~~~---------~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~ 422 (502)
T 3hbx_A 353 VLREGLEKTERFNIVSK-DEGVPLVAFSLKDSSCH---------TEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIR 422 (502)
T ss_dssp HHHHHHHTTTCEEECSC-SSSSSEEEEEESSCSSC---------CHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECC
T ss_pred HHHHHHHhCCCEEEEeC-CCCceEEEEEecCCCcC---------CHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeC
Confidence 88888877632222111 02344556666532111 1346889999999986422 1 36999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 415 FIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 415 ~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
..+|+++++.+++.|+++++++++
T Consensus 423 ~~~t~edid~li~~L~~~l~~l~~ 446 (502)
T 3hbx_A 423 EDFSRTLAERLVIDIEKVMRELDE 446 (502)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999988764
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-16 Score=157.40 Aligned_cols=289 Identities=12% Similarity=0.054 Sum_probs=169.4
Q ss_pred HHHHHHHHHHhcCcCCCCeEEEeCChh-hHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCC
Q 013204 79 SLDLAKELLEMFTASKMAKVFFTNSGS-EANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKF 157 (447)
Q Consensus 79 ~~~l~~~l~~~~~~~~~~~v~~~~sGs-eA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~ 157 (447)
..++.+++++++. .+.+ ++|++||+ .++..++..++... +++.||+.++ .|.+....+...|....
T Consensus 135 ~~~~~~~la~~~g-~~~~-~~~t~g~te~a~~~al~~~~~~~------~~~~vi~~~~-~h~s~~~~~~~~G~~~~---- 201 (456)
T 2z67_A 135 TNKILESFFKQLG-LNVH-AIATPISTGMSISLCLSAARKKY------GSNVVIYPYA-SHKSPIKAVSFVGMNMR---- 201 (456)
T ss_dssp HHHHHHHHHHHTT-CCCE-EEEESSCHHHHHHHHHHHHHHHH------CCCEEEEECC-CCHHHHHHHHHTTCEEE----
T ss_pred HHHHHHHHHHHcC-CCCC-EEEeCcHHHHHHHHHHHHHHHhc------CCCEEEEECC-CcHHHHHHHHHcCCCce----
Confidence 3457777887763 3333 99999999 57776777654321 2355666666 55554433333332211
Q ss_pred CCCCCcceecCC---CCcccCCCCCCChhHHHHHHHHHHHHHH-HhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHH
Q 013204 158 DLPAPFVLHTDC---PHYWRYAHPGETEEEYSTRLANNLEDLI-LKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAV 233 (447)
Q Consensus 158 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~le~~l-~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l 233 (447)
.++. .+.+. .++++|++.+ ......++.+|++...++..|.+.+ +++|.++
T Consensus 202 --------~v~~~~~~~~~~-------------~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~----l~~I~~l 256 (456)
T 2z67_A 202 --------LVETVLDGDRVY-------------VPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKI 256 (456)
T ss_dssp --------EECCEEETTEEE-------------CCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHH
T ss_pred --------EEEEeccCCCCC-------------cCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC----HHHHHHH
Confidence 1111 01111 1147788887 3211124555655555556677766 9999999
Q ss_pred HHhcCCEEEEehhhcCCCcccc-ccccc-cCCCCCCeeee--cccCCCcccceeEEEe-ChhHHHHhhhccCCCCccCcC
Q 013204 234 VKKYDILFIADEVICAFGRLGT-MFGCD-KYSIKPDLVSF--AKALSSAYMPIGAILV-SPEVSEVIHSQSNTLGSFSHG 308 (447)
Q Consensus 234 ~~~~g~~li~DEv~~g~g~~g~-~~~~~-~~~~~~d~v~~--sK~l~gg~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~ 308 (447)
|++||+++++||+|.++. .|. ..... ..+ .+|++++ +|.+.++ +++|++++ ++++++.+... ..+
T Consensus 257 a~~~g~~v~vD~A~~~~~-~g~~~~~~~~~~~-~~D~~~~s~hK~~~~p-~g~G~l~~~~~~~~~~l~~~-------~~g 326 (456)
T 2z67_A 257 CENYDIPHIINGAYAIQN-NYYLEKLKKAFKY-RVDAVVSSSDKNLLTP-IGGGLVYSTDAEFIKEISLS-------YPG 326 (456)
T ss_dssp HHHHTCCEEEECTTTTTC-HHHHHHHHHHHTS-CCSEEEEEHHHHHCCC-SSCEEEEESCHHHHHHHHTT-------SCS
T ss_pred HHHcCCcEEEECcchHHH-HHhhHHHHHhhCC-CCCEEEEcCCCCcCCC-CCeEEEEEcCHHHHhhcCcC-------CCC
Confidence 999999999999987552 221 11111 112 5788876 5876666 78999999 57777777421 111
Q ss_pred CCCCCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHhHhhcc---CCCceeeEeeeeeEEEEEeecCCCCCCCCC
Q 013204 309 FTYSGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQDGVKAFS---DSPIIGEIRGTGLILGTEFADNKSPNEPFP 382 (447)
Q Consensus 309 ~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~---~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~ 382 (447)
.. ..++ ..+..+++..+.. ++..++..++.+++++.|+++. +..+.. .. .++.+.+..+.
T Consensus 327 ~~-~~~~--~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~---~~-~~v~~~~~~~~------- 392 (456)
T 2z67_A 327 RA-SATP--VVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLD---VE-SPIASCISVNS------- 392 (456)
T ss_dssp CB-CSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCC---CC-CSSEEEEECSS-------
T ss_pred CC-CCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecC---CC-CeEEEEEeccc-------
Confidence 11 1222 2233334443322 3456778888889988888773 322221 11 23334442111
Q ss_pred CCcchHHHHHHHHHHcCc---eEE------------e-eCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 383 PEWGIGAYFGAQCEKHGM---LVR------------V-SGDNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 383 ~~~~~~~~~~~~l~~~Gi---~~~------------~-~g~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
....+.++|.++|+ -+. . ..+.+|++.++.+|+++|++++++|++++
T Consensus 393 ----~~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 393 ----DPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp ----CHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred ----HHHHHHHHHHHcCCCcceEEeecCccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 02357888888885 232 1 13579999988899999999999998754
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-16 Score=160.29 Aligned_cols=338 Identities=13% Similarity=0.061 Sum_probs=187.9
Q ss_pred EEecCCccccccCCCCCHHHHHHHHHHHhcCCc-cccc--CcCCChHHHH----HHHHHHHhcCcCCCC---eEEEeCCh
Q 013204 35 YLDSLAGLWCTALGGSEPRLVAAATAQLNTLPF-YHSF--WNRTTKPSLD----LAKELLEMFTASKMA---KVFFTNSG 104 (447)
Q Consensus 35 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~--~~~~~~~~~~----l~~~l~~~~~~~~~~---~v~~~~sG 104 (447)
.|++.++. ...+|.|++++.+.+.+... +++. .....+...+ ..+++++++. .+.+ ..+..+||
T Consensus 46 ~i~L~a~e-----~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g-~~~~~~~~~V~~~sG 119 (483)
T 1rv3_A 46 GLELIASE-----NFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYG-LDPQCWGVNVQPYSG 119 (483)
T ss_dssp SEECCTTC-----CCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTT-CCTTTEEEECCCSSH
T ss_pred CeEEEcCC-----CCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhC-CCcccCceEEEECCc
Confidence 46665442 13689999999988865320 1110 1112223333 3377777764 2332 22455667
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhH
Q 013204 105 SEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEE 184 (447)
Q Consensus 105 seA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (447)
++||..++..+. .++++|++.++.|.++...... .+..........+..++++.. ....
T Consensus 120 s~an~~~~~all--------~pGD~Vl~~~~~~~~~~~~~~~-----~~~~~v~~~G~~~~~v~~~~~----~~~~---- 178 (483)
T 1rv3_A 120 SPANFAVYTALV--------EPHGRIMGLDLPDGGHLTHGFM-----TDKKKISATSIFFESMAYKVN----PDTG---- 178 (483)
T ss_dssp HHHHHHHHHHHT--------CTTCEEEEECGGGTCCGGGCCB-----CSSCBCSHHHHHSEEEEECBC----TTTC----
T ss_pred HHHHHHHHHHhc--------CCCCEEEEecCccCcCcchhhh-----hcccCcccccceEEEEECccc----cCCC----
Confidence 799988887653 3457899988877665321100 000000000000111111000 0000
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-CCCccccc-cccccC
Q 013204 185 YSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-AFGRLGTM-FGCDKY 262 (447)
Q Consensus 185 ~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-g~g~~g~~-~~~~~~ 262 (447)
..++++|++.+... ++++|++ ...+.+ .+.+ +++|+++|++||++||+|++|. |+...|.. ..+.
T Consensus 179 --~iD~d~le~~i~~~---~tklIi~-~~sn~~-~~~d----l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~-- 245 (483)
T 1rv3_A 179 --YIDYDRLEENARLF---HPKLIIA-GTSCYS-RNLD----YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE-- 245 (483)
T ss_dssp --SBCHHHHHHHHHHH---CCSEEEE-CCSSCC-SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG--
T ss_pred --cCCHHHHHHHHhhc---CCcEEEE-eCCcCC-CcCC----HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC--
Confidence 01147888888632 2456666 433333 3444 9999999999999999999986 32111210 1111
Q ss_pred CCCCCeeee--cccCCCcccceeEEEeChh---------------HHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHH
Q 013204 263 SIKPDLVSF--AKALSSAYMPIGAILVSPE---------------VSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEAL 325 (447)
Q Consensus 263 ~~~~d~v~~--sK~l~gg~~~~g~~~~~~~---------------~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l 325 (447)
..|++++ +|.|+| ++.|+++++++ +.+.+... ...+...+++...+++..+++
T Consensus 246 --~~div~~s~~K~l~G--prgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~------~~~~~~g~~~~~~iaal~~Al 315 (483)
T 1rv3_A 246 --HCHVVTTTTHKTLRG--CRAGMIFYRRGVRSVDPKTGKEILYNLESLINSA------VFPGLQGGPHNHAIAGVAVAL 315 (483)
T ss_dssp --TCSEEEEESSGGGCC--CSCEEEEEECSBCC-------CCBCCHHHHHHHH------HTTTTCCSCCHHHHHHHHHHH
T ss_pred --CCcEEEecCcccCCC--CCceEEEEcchhhhhccccCcchhhHHHHHhhhh------cCCcccCCccHHHHHHHHHHH
Confidence 3577764 599976 57799998874 33333211 011112233444455555567
Q ss_pred HHHhh---hcHHHHHHHHHHHHHHhHhhccCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCce
Q 013204 326 KIYKE---RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGML 401 (447)
Q Consensus 326 ~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~ 401 (447)
+.+.. ++..+++.++.+++.+.|+++ +..++. .+. ..+..+++..... ....+.+.|.+.||.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~~~~~~~~~v~~~~~g~----------~~~~~~~~L~~~gI~ 382 (483)
T 1rv3_A 316 KQAMTPEFKEYQRQVVANCRALSAALVEL-GYKIVT--GGSDNHLILVDLRSKGT----------DGGRAEKVLEACSIA 382 (483)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGG--GSCSSSEEEEEGGGGTC----------CHHHHHHHHHHTTEE
T ss_pred HHHhChhHHHHHHHHHHHHHHHHHHHHhc-CCEecc--CCCCCceEEEeccCCCC----------CHHHHHHHHHhCCcE
Confidence 65543 345677788888888888775 322221 111 1344556543211 134577788899999
Q ss_pred EE----eeC------CEEEEecCCCCC----HHHHHHHHHHHHHHHHH
Q 013204 402 VR----VSG------DNIMMSPPFIMS----PEEVDELISKYGKALKA 435 (447)
Q Consensus 402 ~~----~~g------~~iR~~~~~~~t----~e~i~~~~~~l~~~l~~ 435 (447)
+. ++. +.+||+++..+| ++|+++++++|+++++.
T Consensus 383 v~~~~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 383 CNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp CEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCCCCcCCCCceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 88 532 479999886556 99999999999988865
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=6e-17 Score=155.82 Aligned_cols=316 Identities=10% Similarity=0.011 Sum_probs=183.2
Q ss_pred CCHHHHHHHHHHHhcCC----ccccc---CcCCChHHHHHHHHHHHhcCcCCCCeEEEeCCh-hhHHHHHHHHHHHHHHh
Q 013204 50 SEPRLVAAATAQLNTLP----FYHSF---WNRTTKPSLDLAKELLEMFTASKMAKVFFTNSG-SEANDTQVKLVWYYNNA 121 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~----~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sG-seA~~~Al~~~~~~~~~ 121 (447)
.+|.+++++.+.+.+.. ..+.. .....+...++++++++.+.....+++++++|+ ++|+..++..+...
T Consensus 14 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~~--- 90 (360)
T 1w23_A 14 LPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTK--- 90 (360)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCT---
T ss_pred CCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcCC---
Confidence 68999999999886420 00111 011223466788888888743234689999988 99999998765310
Q ss_pred cCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC-cccCCCCCCChhHHHHHHHHHHHH-HHHh
Q 013204 122 LGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH-YWRYAHPGETEEEYSTRLANNLED-LILK 199 (447)
Q Consensus 122 ~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~le~-~l~~ 199 (447)
+ ++..+++.....|.....+.. .| .. ..++... .... +++++++ .+.
T Consensus 91 -~--~~g~~vi~~~~~~~~~~~~~~-~g-~~------------~~v~~~~~~~~~-------------d~~~l~~~~i~- 139 (360)
T 1w23_A 91 -G--TIGNYVLTGSWSEKALKEAKL-LG-ET------------HIAASTKANSYQ-------------SIPDFSEFQLN- 139 (360)
T ss_dssp -T--CEEEEEECSHHHHHHHHHHHT-TS-EE------------EEEEECGGGTSC-------------SCCCGGGCCCC-
T ss_pred -C--CcccEEEecchhHHHHHHHHH-hC-Ce------------EEeecccccCcC-------------CccchHhhccC-
Confidence 1 112223322222222111111 12 11 1111110 0000 0134444 332
Q ss_pred hCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCC
Q 013204 200 EGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSS 277 (447)
Q Consensus 200 ~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~g 277 (447)
+++++|+++++++.+|.+.+ +++++||+++|+||+|+.+... ..... . |+++ ++|.++.
T Consensus 140 ---~~~k~v~~~~~~nptG~~~~---------~i~~~~~~~li~D~a~~~~~~~---~~~~~--~--di~~~s~sK~~~~ 200 (360)
T 1w23_A 140 ---ENDAYLHITSNNTIYGTQYQ---------NFPEINHAPLIADMSSDILSRP---LKVNQ--F--GMIYAGAQKNLGP 200 (360)
T ss_dssp ---TTEEEEEEESEETTTTEECS---------SCCCCCSSCEEEECTTTTTSSC---CCGGG--C--SEEEEETTTTTSC
T ss_pred ---CCCCEEEEeCCCCCcceecc---------cccccCCceEEEechhhcCCCC---cCccc--C--CEEEEEcccccCC
Confidence 35677777777777776644 2334899999999999844221 11111 1 6765 4698864
Q ss_pred cccceeEEEeChhHHHHhhhccCCCCccC------cCCC-CCCcHHHHHHHHHHHHHHhh----hcHHHHHHHHHHHHHH
Q 013204 278 AYMPIGAILVSPEVSEVIHSQSNTLGSFS------HGFT-YSGHPVSCAVAIEALKIYKE----RNIVEQVNKIAPKFQD 346 (447)
Q Consensus 278 g~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~t-~~~~~~~~~aa~a~l~~~~~----~~~~~~~~~~~~~l~~ 346 (447)
.++|++++++++++.+.... ...+. ...+ .+.+..++.++.++++.+.+ ++..++.+++.+++.+
T Consensus 201 --~G~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~ 276 (360)
T 1w23_A 201 --SGVTVVIVKKDLLNTKVEQV--PTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYD 276 (360)
T ss_dssp --TTCEEEEEEHHHHCSCCTTC--CGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred --CCcEEEEEcHHHHhhcccCC--cchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 36899999998876654210 00000 1122 24466677777777876543 3356777778888888
Q ss_pred hHhhccCCCceeeE--e-ee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC---CEEEEecCCCCCH
Q 013204 347 GVKAFSDSPIIGEI--R-GT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG---DNIMMSPPFIMSP 419 (447)
Q Consensus 347 ~L~~l~~~~~~~~~--~-~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g---~~iR~~~~~~~t~ 419 (447)
.|+++.. +.... . .. +.++.+.+.... ....+.+.|.++||.+.++. +.+|++++..+++
T Consensus 277 ~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~~~~~~ 343 (360)
T 1w23_A 277 TIDESNG--FYVGHAEKGSRSLMNVTFNLRNEE-----------LNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPI 343 (360)
T ss_dssp HHHTTTT--SSEESSCGGGBCSSEEEEECSSHH-----------HHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCH
T ss_pred HHHHccC--cccccCCchhccCcEEEEEcCCCc-----------cHHHHHHHHHHCCeeeecCCCCCCeEEEEecCCCCH
Confidence 8877632 21111 1 12 336666654310 13457788899999987653 5699999888899
Q ss_pred HHHHHHHHHHHHHHHH
Q 013204 420 EEVDELISKYGKALKA 435 (447)
Q Consensus 420 e~i~~~~~~l~~~l~~ 435 (447)
+++++++++|++++++
T Consensus 344 ~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 344 DACIALRELMIQFKEN 359 (360)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999988754
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-16 Score=155.74 Aligned_cols=285 Identities=12% Similarity=0.076 Sum_probs=171.0
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh---hcccCCc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA---ASLSGLP 151 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~---~~~~~~~ 151 (447)
..+...++++++++++. .+.+++++||++|+..+++.+. ..+++||+..+.|++..... +...|..
T Consensus 80 ~~p~~~~le~~lA~l~g---~~~~i~~ssGt~Ai~~al~~l~--------~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~ 148 (415)
T 2fq6_A 80 GTLTHFSLQQAMCELEG---GAGCVLFPCGAAAVANSILAFI--------EQGDHVLMTNTAYEPSQDFCSKILSKLGVT 148 (415)
T ss_dssp CCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHTTC--------CTTCEEEEETTSCHHHHHHHHHTGGGGTCE
T ss_pred CCchHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHHh--------CCCCEEEEeCCCchHHHHHHHHHHHHcCcE
Confidence 56678889999999863 3467888999999999998542 23478999999998764221 1111111
Q ss_pred cccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHH
Q 013204 152 ALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 231 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~ 231 (447)
+..++..+ ++++++.+. +++++|++|.+++..|.+.+ +++|.
T Consensus 149 ------------v~~v~~~d------------------~~~le~ai~----~~tklV~~e~~~NptG~v~d----l~~I~ 190 (415)
T 2fq6_A 149 ------------TSWFDPLI------------------GADIVKHLQ----PNTKIVFLESPGSITMEVHD----VPAIV 190 (415)
T ss_dssp ------------EEEECTTC------------------GGGGGGGCC----TTEEEEEEESSCTTTCCCCC----HHHHH
T ss_pred ------------EEEECCCC------------------HHHHHHhhc----cCCcEEEEECCCCCCCEeec----HHHHH
Confidence 11112111 255666554 35788999998888888876 99999
Q ss_pred HHHHh--cCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCccc-ceeEEEeChhHHHHhhhccCCCCccC
Q 013204 232 AVVKK--YDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSAYM-PIGAILVSPEVSEVIHSQSNTLGSFS 306 (447)
Q Consensus 232 ~l~~~--~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg~~-~~g~~~~~~~~~~~~~~~~~~~~~~~ 306 (447)
++|++ ||+++|+|++|... ....+. ....|+++ ++|.+++++. .+|++++++++++.+.... .
T Consensus 191 ~la~~~~~g~~livD~a~a~~-~~~~p~-----~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~------~ 258 (415)
T 2fq6_A 191 AAVRSVVPDAIIMIDNTWAAG-VLFKAL-----DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENA------Y 258 (415)
T ss_dssp HHHHHHCTTCEEEEECTTTTT-TSSCGG-----GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHH------H
T ss_pred HHHHhhcCCCEEEEECCCccc-ccCCcc-----ccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHH------H
Confidence 99999 99999999999732 222221 23468774 6799987532 3688889888877765321 0
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccC-----CCcee----------eEeeeeeEEEEEe
Q 013204 307 HGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD-----SPIIG----------EIRGTGLILGTEF 371 (447)
Q Consensus 307 ~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~-----~~~~~----------~~~~~g~~~~i~~ 371 (447)
.. ....++..+..++..++.+. ...++..++.+.+++.|++.+. ++.+. ...+.|.++.+.+
T Consensus 259 ~~-G~~~~~~~a~~~~~~l~~l~--~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l 335 (415)
T 2fq6_A 259 LM-GQMVDADTAYITSRGLRTLG--VRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVL 335 (415)
T ss_dssp HT-TCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEE
T ss_pred hc-CCCCCHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEE
Confidence 11 12335665555555555432 2234445556666666655311 11100 0124577888887
Q ss_pred ecCCCCCCCCCCCcchHHHHHHHHHHcCce----------EE--e--------------eCCEEEEecCCCCCHHHHHHH
Q 013204 372 ADNKSPNEPFPPEWGIGAYFGAQCEKHGML----------VR--V--------------SGDNIMMSPPFIMSPEEVDEL 425 (447)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~----------~~--~--------------~g~~iR~~~~~~~t~e~i~~~ 425 (447)
...... .....+...+.-.++. .. | .++.||++..+..++++|+.+
T Consensus 336 ~g~~~~--------~~~~~~l~~l~~~~~a~s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l 407 (415)
T 2fq6_A 336 KKKLNN--------EELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADL 407 (415)
T ss_dssp SSCCCH--------HHHHHHHTTCSSCEECSCCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHH
T ss_pred CCCCCH--------HHHHHHHHhCCcCeEeccCCCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHH
Confidence 641000 0011122221111110 00 0 135799999999999999998
Q ss_pred HHHHHH
Q 013204 426 ISKYGK 431 (447)
Q Consensus 426 ~~~l~~ 431 (447)
.++|++
T Consensus 408 ~~al~~ 413 (415)
T 2fq6_A 408 DAGFAR 413 (415)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 888864
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.73 E-value=5.6e-16 Score=153.88 Aligned_cols=320 Identities=14% Similarity=0.078 Sum_probs=173.4
Q ss_pred CCHHHHHHHHHHHhc-CCcccc---cCcCC--ChHHH-HHHHHHHHhcCcCCCC---eEEEeCChhhHHHHHHHHHHHHH
Q 013204 50 SEPRLVAAATAQLNT-LPFYHS---FWNRT--TKPSL-DLAKELLEMFTASKMA---KVFFTNSGSEANDTQVKLVWYYN 119 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~-~~~~~~---~~~~~--~~~~~-~l~~~l~~~~~~~~~~---~v~~~~sGseA~~~Al~~~~~~~ 119 (447)
.+|+|++|+...+.+ +..+++ ..++. .+... ...+++++++. .+.+ ..++++||++||..++..+.
T Consensus 66 ~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g-~~~~~~~~~v~~~sGt~An~~al~al~--- 141 (490)
T 2a7v_A 66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFD-LDPAQWGVNVQPYSGSPANLAVYTALL--- 141 (490)
T ss_dssp CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTT-CCTTTEEEECCCSSHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcC-CCcccCceEEeCCchHHHHHHHHHHHc---
Confidence 589999999887754 221211 11111 12222 22377788773 2322 24566799999999998763
Q ss_pred HhcCCCCcceEEEEcCCCccchh-h------hhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHH
Q 013204 120 NALGRPNKKKFIARQKSYHGSTL-I------AASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 192 (447)
Q Consensus 120 ~~~~~~~~~~vi~~~~~yhg~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (447)
.++++||+.++.|.|+.. + .+..++.. + ..++++- +... ...++++
T Consensus 142 -----~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~-----~-------~~~~~~v----d~~~------~~iD~d~ 194 (490)
T 2a7v_A 142 -----QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIF-----F-------ESMPYKL----NPKT------GLIDYNQ 194 (490)
T ss_dssp -----CSCEECCC-------------------------------------------CCB----CTTT------CSBCHHH
T ss_pred -----CCCCEecccCccccccccchhhhcchhHHHcCCe-----E-------EEEeccc----cccc------CCcCHHH
Confidence 345788887776644321 1 11112210 0 0011100 0000 0112488
Q ss_pred HHHHHHhhCCCcEEEEEEc-cccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-CCCcccc-ccccccCCCCCCee
Q 013204 193 LEDLILKEGPETIAAFIAE-PVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-AFGRLGT-MFGCDKYSIKPDLV 269 (447)
Q Consensus 193 le~~l~~~~~~~~a~vi~e-pv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-g~g~~g~-~~~~~~~~~~~d~v 269 (447)
|++.+....+ ++|++. +.++. ..+ +++|+++|++||++|++|++|. |+...|. ...+. ..|++
T Consensus 195 le~~l~~~~~---klIi~~~s~~~~---~~d----l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~----~aDiv 260 (490)
T 2a7v_A 195 LALTARLFRP---RLIIAGTSAYAR---LID----YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK----HADIV 260 (490)
T ss_dssp HHHHHHHHCC---SEEEECCSSCCS---CCC----HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG----TCSEE
T ss_pred HHHHHhhcCC---cEEEEcCCCCCC---ccc----HHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC----CCCEE
Confidence 8888764332 355554 44432 333 8999999999999999999985 3211221 11111 25776
Q ss_pred e--ecccCCCcccceeEEEeChh---------------HHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh--
Q 013204 270 S--FAKALSSAYMPIGAILVSPE---------------VSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE-- 330 (447)
Q Consensus 270 ~--~sK~l~gg~~~~g~~~~~~~---------------~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-- 330 (447)
+ ++|+|+| ++.|+++++++ +.+.++.. ...+...++++..+++..++++.+..
T Consensus 261 ~~S~hK~l~G--p~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~------~~~g~qggp~~~~iaAla~Al~~~~~~~ 332 (490)
T 2a7v_A 261 TTTTHKTLRG--ARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFA------VFPSLQGGPHNHAIAAVAVALKQACTPM 332 (490)
T ss_dssp EEESSGGGCS--CSCEEEEEECSEEEEETTTEEEEECCCHHHHHHH------HTTTTCCSCCHHHHHHHHHHHHHHHSHH
T ss_pred EECCcccCcc--ccchheeeccchhcccccccchhhHHHHHHHHHH------hcccCCCCchHHHHHHHHHHHHHHhhhh
Confidence 5 5799976 46788888764 44444421 11111122344445544455655432
Q ss_pred -hcHHHHHHHHHHHHHHhHhhccCCCceeeEee-eeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee---
Q 013204 331 -RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRG-TGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS--- 405 (447)
Q Consensus 331 -~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--- 405 (447)
+++.+++.++.+++++.|+++ +..++. .+ ...++.+++..... ....+.+.|.+.||.+...
T Consensus 333 ~~~~~~~~~~na~~L~~~L~~~-G~~v~~--~~t~t~lv~vdl~~~g~----------~~~~~~~~L~~~GI~v~~~~~p 399 (490)
T 2a7v_A 333 FREYSLQVLKNARAMADALLER-GYSLVS--GGTDNHLVLVDLRPKGL----------DGARAERVLELVSITANKNTCP 399 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCEEGG--GSCSSSEEEEECTTTTC----------CHHHHHHHHHHTTEECEEECCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CcEEec--CCCCCeEEEEEeCCCCC----------CHHHHHHHHHhCCeEEecCccC
Confidence 446678888899999999875 322211 11 12345566543221 1445778888999998742
Q ss_pred -------CCEEEEecC----CCCCHHHHHHHHHHHHHHHHH
Q 013204 406 -------GDNIMMSPP----FIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 406 -------g~~iR~~~~----~~~t~e~i~~~~~~l~~~l~~ 435 (447)
.+.||++.+ ..++++|++++++.|.++++.
T Consensus 400 ~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~ 440 (490)
T 2a7v_A 400 GDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNI 440 (490)
T ss_dssp TCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHHHHh
Confidence 257999654 357999999999999888864
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-15 Score=150.63 Aligned_cols=298 Identities=11% Similarity=-0.003 Sum_probs=170.0
Q ss_pred eEEEeCChhhHHHHHHHHHHHHHHhc----CCC------CcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCccee
Q 013204 97 KVFFTNSGSEANDTQVKLVWYYNNAL----GRP------NKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 166 (447)
Q Consensus 97 ~v~~~~sGseA~~~Al~~~~~~~~~~----~~~------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (447)
..+|++|||+||..|+.+++.....+ +.. ..+.+++.+...|.+...+....+... ..
T Consensus 147 ~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~~------------~~ 214 (481)
T 4e1o_A 147 GGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKM------------KF 214 (481)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTCEE------------EE
T ss_pred ceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCCce------------EE
Confidence 67999999999999999887542210 110 013355556667776544444333221 12
Q ss_pred cCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhh--CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEe
Q 013204 167 TDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE--GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIAD 244 (447)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~D 244 (447)
++....++ . ++++|++.+... ....+.+|++....+..|.+.+ +++|.++|++||+++++|
T Consensus 215 v~~~~~~~-----~--------d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~----l~~I~~la~~~~~~lhvD 277 (481)
T 4e1o_A 215 LPVDDNFS-----L--------RGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDC----LSELGPICAREGLWLHID 277 (481)
T ss_dssp ECCCTTSC-----C--------CHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEE
T ss_pred EEcCCCCc-----C--------CHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCC----HHHHHHHHHHcCCeEEee
Confidence 22211111 1 147888887642 1122555666666666777766 999999999999999999
Q ss_pred hhhcCCCccccccccccCCC-CCCeeee--cccCCCcccceeEEEeChh-HHH-HhhhccCCCCc--------c---CcC
Q 013204 245 EVICAFGRLGTMFGCDKYSI-KPDLVSF--AKALSSAYMPIGAILVSPE-VSE-VIHSQSNTLGS--------F---SHG 308 (447)
Q Consensus 245 Ev~~g~g~~g~~~~~~~~~~-~~d~v~~--sK~l~gg~~~~g~~~~~~~-~~~-~~~~~~~~~~~--------~---~~~ 308 (447)
++|.+....+..+.....++ ..|.+++ .|.++++ ...|+++.++. ... .+......... + ...
T Consensus 278 aA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p-~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~ 356 (481)
T 4e1o_A 278 AAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVH-FDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIP 356 (481)
T ss_dssp CTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCC-SSCEEEEESBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSS
T ss_pred hhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCC-CceEEEEEeCHHHHHHHhcCCchhccCcccCCCCCccccccc
Confidence 99976433322222222344 3688876 5988877 57788877654 332 22110000000 0 000
Q ss_pred CCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchH
Q 013204 309 FTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIG 388 (447)
Q Consensus 309 ~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~ 388 (447)
.+.....+.+.+++..+..-.-++..++..++.+++++.|+++++..++. .....++.+.+.... ...
T Consensus 357 ~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~--~~~~~~v~f~~~~~~----------~~~ 424 (481)
T 4e1o_A 357 LSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPA--KRHLGLVVFRLKGPN----------SLT 424 (481)
T ss_dssp SCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCS--CCCSSEEEEEESSCH----------HHH
T ss_pred CCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec--CCceeEEEEEeCCch----------HHH
Confidence 01112334444444433221123456777778888888887763332221 122344455553211 134
Q ss_pred HHHHHHHHHcCce-EEee---C-CEEEEecC-CCCCHHHHHHHHHHHHHHHHHH
Q 013204 389 AYFGAQCEKHGML-VRVS---G-DNIMMSPP-FIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 389 ~~~~~~l~~~Gi~-~~~~---g-~~iR~~~~-~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
..+.++|.++|++ +.+. | ..+|++.. ...|+++|++++++|++.++++
T Consensus 425 ~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~l 478 (481)
T 4e1o_A 425 ENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATLI 478 (481)
T ss_dssp HHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5688888888844 3332 2 35999965 3458999999999999988764
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-16 Score=155.58 Aligned_cols=317 Identities=12% Similarity=0.045 Sum_probs=183.1
Q ss_pred CCHHHHHHHHHHHhcCCc-ccccCcCCChHHHHHHHHHHHhcCcCCCCeEEE-eCChhhHHHHHHHHHHHHHHhcCCCCc
Q 013204 50 SEPRLVAAATAQLNTLPF-YHSFWNRTTKPSLDLAKELLEMFTASKMAKVFF-TNSGSEANDTQVKLVWYYNNALGRPNK 127 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~-~~sGseA~~~Al~~~~~~~~~~~~~~~ 127 (447)
.+|++++++.+....... .+.. ....+...++.+++++.+.....++++| ++||++|++.+++.+. .+
T Consensus 51 ~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~--------~~- 120 (398)
T 2fyf_A 51 VRLEQLQTLTTTAAALFGTSHRQ-APVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLI--------DK- 120 (398)
T ss_dssp CCHHHHHGGGTTTTTTTTSCTTS-HHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTC--------SS-
T ss_pred CCHHHHHHHhhcCCCccCcCcCC-HHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhc--------CC-
Confidence 578999888763111100 0110 0012345678888888874322358999 9999999999999763 11
Q ss_pred ceEEEEcCCCccchhhhh-cccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEE
Q 013204 128 KKFIARQKSYHGSTLIAA-SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIA 206 (447)
Q Consensus 128 ~~vi~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a 206 (447)
.++.+...+|+...... ...+ ++. .+..++.++.+. . + .+ + . .+++
T Consensus 121 -gv~~v~~~~~~~~~~~~~~~~~-------~g~---~~~~v~~~~g~~---~----~-------~~----i---~-~~~~ 167 (398)
T 2fyf_A 121 -RSLHLTYGEFSAKFASAVSKNP-------FVG---EPIIITSDPGSA---P----E-------PQ----T---D-PSVD 167 (398)
T ss_dssp -CEEEEECSHHHHHHHHHHHHCT-------TSC---CCEEEECCTTCC---C----C-------CC----C---C-TTCS
T ss_pred -CeEEEeCCHHHHHHHHHHHHhC-------CCC---ceEEEecCCCCC---C----C-------cc----c---c-CCCC
Confidence 23334667776432211 1110 000 011222211000 0 0 00 1 1 2455
Q ss_pred EEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeee--cccCCCcccceeE
Q 013204 207 AFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF--AKALSSAYMPIGA 284 (447)
Q Consensus 207 ~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~--sK~l~gg~~~~g~ 284 (447)
+|++...++.+|.+.+ +++|.++ ||+++|+||+|+.+.. ..... .+|++++ +|.++.++ ++|+
T Consensus 168 ~v~~~~~~nptG~~~~----~~~i~~~---~~~~vivD~a~~~~~~---~~~~~----~~di~~~s~sK~~~~~g-g~g~ 232 (398)
T 2fyf_A 168 VIAWAHNETSTGVAVA----VRRPEGS---DDALVVIDATSGAGGL---PVDIA----ETDAYYFAPQKNFASDG-GLWL 232 (398)
T ss_dssp EEEEESEETTTTEECC----CCCCTTC---C-CEEEEECTTTTTTS---CCCGG----GCSEEEECTTSTTCSCS-SEEE
T ss_pred EEEEeCcCCCcceecc----hHHhhhh---cCCeEEEEeccccCCc---ccCcc----cCcEEEEecCcccCCCC-ceEE
Confidence 6766667777777766 3344443 8999999999984422 11111 2687765 59988763 6899
Q ss_pred EEeChhHHHHhhhcc---CCCCccC----------cCCC-CCCcHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHH
Q 013204 285 ILVSPEVSEVIHSQS---NTLGSFS----------HGFT-YSGHPVSCAVAIEALKIYKER----NIVEQVNKIAPKFQD 346 (447)
Q Consensus 285 ~~~~~~~~~~~~~~~---~~~~~~~----------~~~t-~~~~~~~~~aa~a~l~~~~~~----~~~~~~~~~~~~l~~ 346 (447)
+++++++++.+.... .....+. ...+ ++.+..+++++.++++.+.+. +..++.+++.+++.+
T Consensus 233 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~ 312 (398)
T 2fyf_A 233 AIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYS 312 (398)
T ss_dssp EEECHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred EEECHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 999999887763210 0000000 0122 345666777777788765433 356777778888888
Q ss_pred hHhhccCCCceeeEe-eeee-EEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-----CCEEEEecCCCCCH
Q 013204 347 GVKAFSDSPIIGEIR-GTGL-ILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-----GDNIMMSPPFIMSP 419 (447)
Q Consensus 347 ~L~~l~~~~~~~~~~-~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----g~~iR~~~~~~~t~ 419 (447)
.|+++.+..+..... +.+. ++.+.++... ....+.+.|.++||.+.++ ++.+|+++...+++
T Consensus 313 ~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~~~~t~ 381 (398)
T 2fyf_A 313 WAQERPYTTPFVTDPGLRSQVVGTIDFVDDV-----------DAGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVEP 381 (398)
T ss_dssp HHHHSTTEEESCCSGGGBCSSEEEEEECTTS-----------CHHHHHHHHHHTTCBCCSCCTTTCSSEEEEECCTTSCH
T ss_pred HHHHcCCceeccCChhhcCCcEEEEECCCCC-----------CHHHHHHHHHHCCcEEecCcccCCCCEEEEEecCCCCH
Confidence 887763211111001 1233 6667664311 1456888999999998753 25799999888899
Q ss_pred HHHHHHHHHHHHHHHH
Q 013204 420 EEVDELISKYGKALKA 435 (447)
Q Consensus 420 e~i~~~~~~l~~~l~~ 435 (447)
+++++++++|++++++
T Consensus 382 e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 382 DDVSALTECVDWVVER 397 (398)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999988754
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.3e-15 Score=148.30 Aligned_cols=316 Identities=11% Similarity=0.005 Sum_probs=169.9
Q ss_pred HHHHHHHHhcCcCC--------CCeEEEeCChhhHHHHHHHHHHHHHHh----c-CCC-----Ccce-EEEEcCCCccch
Q 013204 81 DLAKELLEMFTASK--------MAKVFFTNSGSEANDTQVKLVWYYNNA----L-GRP-----NKKK-FIARQKSYHGST 141 (447)
Q Consensus 81 ~l~~~l~~~~~~~~--------~~~v~~~~sGseA~~~Al~~~~~~~~~----~-~~~-----~~~~-vi~~~~~yhg~~ 141 (447)
++.+++++++.... ...++|++|||+||..|+..++..... . |+- .++. |++.++. |.+.
T Consensus 117 ~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~-h~s~ 195 (486)
T 1js3_A 117 VMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQA-HSSV 195 (486)
T ss_dssp HHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTC-CHHH
T ss_pred HHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCC-cHHH
Confidence 44455666653211 246899999999999999887642111 0 100 0122 4444444 4444
Q ss_pred hhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhC--CCcEEEEEEccccCCCCC
Q 013204 142 LIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEG--PETIAAFIAEPVIGAGGV 219 (447)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~--~~~~a~vi~epv~~~~G~ 219 (447)
..+....|.. +..++....++ . ++++|++.+.... ...+.+|++...++..|.
T Consensus 196 ~~~~~~~G~~------------v~~v~~d~~~~-----~--------d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~ 250 (486)
T 1js3_A 196 ERAGLIGGVK------------LKAIPSDGKFA-----M--------RASALQEALERDKAAGLIPFFVVATLGTTSCCS 250 (486)
T ss_dssp HHHHHHHTCE------------EEEECCCTTSC-----C--------CHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCC
T ss_pred HHHHHhCCCc------------eEEeecCCCCC-----C--------CHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCC
Confidence 3333323322 12222211111 1 1478888876421 112335555555555666
Q ss_pred ccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCC-CCCeeee--cccCCCcccceeEEEeChh-H-HHH
Q 013204 220 IPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSI-KPDLVSF--AKALSSAYMPIGAILVSPE-V-SEV 294 (447)
Q Consensus 220 ~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~-~~d~v~~--sK~l~gg~~~~g~~~~~~~-~-~~~ 294 (447)
+.+ +++|.++|++||+++++|++|.++......+.....++ ..|.+++ +|.++.+ +++|+++.+++ . .+.
T Consensus 251 ~~~----l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p-~~~G~l~~~~~~~l~~~ 325 (486)
T 1js3_A 251 FDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN-FDCSAMWVKRRTDLTGA 325 (486)
T ss_dssp BCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC-SSCEEEEESCHHHHHGG
T ss_pred CCC----HHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCC-cceEEEEEeCHHHHHHH
Confidence 655 99999999999999999999986432221111111232 3687775 5988776 68899998754 2 344
Q ss_pred hhhccCCCCc----------cCc---CCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEe
Q 013204 295 IHSQSNTLGS----------FSH---GFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIR 361 (447)
Q Consensus 295 ~~~~~~~~~~----------~~~---~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~ 361 (447)
+......... +.. ..+.....+++.+++..+..-.-++..++..++.+++.+.|+++++..++. .
T Consensus 326 ~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~--~ 403 (486)
T 1js3_A 326 FKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCA--E 403 (486)
T ss_dssp GC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECS--C
T ss_pred hcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeC--C
Confidence 3211000000 000 001112234444444333211123445666777888888887753222211 1
Q ss_pred eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEE-ee---C-CEEEEec-CCCCCHHHHHHHHHHHHHHHHH
Q 013204 362 GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR-VS---G-DNIMMSP-PFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 362 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~-~~---g-~~iR~~~-~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
....++.+.+.... .....+.++|.++|+++. +. + ..+|++. ....|+++|++++++|++.+++
T Consensus 404 ~~~~~v~f~~~~~~----------~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~ 473 (486)
T 1js3_A 404 VTLGLVCFRLKGSD----------GLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAE 473 (486)
T ss_dssp CCSSEEEEEESSCH----------HHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CceeEEEEEecChH----------HHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 23444455443210 124568888888886533 21 2 4699995 4457999999999999999988
Q ss_pred HHHH
Q 013204 436 TEER 439 (447)
Q Consensus 436 ~~~~ 439 (447)
+.++
T Consensus 474 ~~~~ 477 (486)
T 1js3_A 474 LLAA 477 (486)
T ss_dssp HHC-
T ss_pred HHhh
Confidence 7654
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.4e-15 Score=148.90 Aligned_cols=298 Identities=11% Similarity=-0.005 Sum_probs=167.4
Q ss_pred eEEEeCChhhHHHHHHHHHHHHHHhc----CCC------CcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCccee
Q 013204 97 KVFFTNSGSEANDTQVKLVWYYNNAL----GRP------NKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 166 (447)
Q Consensus 97 ~v~~~~sGseA~~~Al~~~~~~~~~~----~~~------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (447)
..+|++|||+||..|+..++.....+ +.. ..+.+|+.+...|.+...+....|... ..
T Consensus 141 ~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g~~~------------~~ 208 (475)
T 3k40_A 141 GGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKL------------RS 208 (475)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHTCEE------------EE
T ss_pred CeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchHHHHHHHHHcCCce------------EE
Confidence 68999999999999999887543111 110 012355566677776555444333221 12
Q ss_pred cCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhC--CCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEe
Q 013204 167 TDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEG--PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIAD 244 (447)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~--~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~D 244 (447)
++.... . .++++|++.+.... ...+.+|++....+..|.+.+ +++|.++|++||+++++|
T Consensus 209 v~~d~~-------------~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~----l~~I~~la~~~~~~lhvD 270 (475)
T 3k40_A 209 VQSENH-------------R-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY----LDECGPVGNKHNLWIHVD 270 (475)
T ss_dssp ECCBTT-------------B-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHTTCEEEEE
T ss_pred EECCCC-------------C-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC----HHHHHHHHHHhCCeEEEe
Confidence 222110 0 12488888876431 122455665555666677766 999999999999999999
Q ss_pred hhhcCCCccccccccccCCC-CCCeeeec--ccCCCcccceeEEEeChh-H-HHHhhhccCCCCc--------cCcCCCC
Q 013204 245 EVICAFGRLGTMFGCDKYSI-KPDLVSFA--KALSSAYMPIGAILVSPE-V-SEVIHSQSNTLGS--------FSHGFTY 311 (447)
Q Consensus 245 Ev~~g~g~~g~~~~~~~~~~-~~d~v~~s--K~l~gg~~~~g~~~~~~~-~-~~~~~~~~~~~~~--------~~~~~t~ 311 (447)
++|.+.......+.....++ ..|.++++ |.++++ .++|+++.++. . .+.+......... +...+..
T Consensus 271 ~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p-~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~ 349 (475)
T 3k40_A 271 AAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVN-FDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIP 349 (475)
T ss_dssp CTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCC-SSCEEEEESSGGGC---------------------------C
T ss_pred HHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCC-CceEEEEEeCHHHHHHHhcCCccccCCCcCCCCCCccccccc
Confidence 99975322222211112233 36888764 888876 57788887654 3 2222211000000 0000000
Q ss_pred CCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchH
Q 013204 312 SGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIG 388 (447)
Q Consensus 312 ~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~ 388 (447)
.+-+......+++++.+.. ++..++..++.+++++.|+++++..++. .....++.+.+.... ...
T Consensus 350 ~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~--~~~~~iv~f~~~~~~----------~~~ 417 (475)
T 3k40_A 350 LGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAA--EINMGLVCFRLKGSN----------ERN 417 (475)
T ss_dssp CCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESS--CCBTTEEEEEESSCH----------HHH
T ss_pred CCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEec--CCceEEEEEEeCCch----------HHH
Confidence 1111222333444444333 4456777788888888888763322221 123344455553211 134
Q ss_pred HHHHHHHHHcCceE-Eee---C-CEEEEecC-CCCCHHHHHHHHHHHHHHHHHHH
Q 013204 389 AYFGAQCEKHGMLV-RVS---G-DNIMMSPP-FIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 389 ~~~~~~l~~~Gi~~-~~~---g-~~iR~~~~-~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
..+.++|.++|.+. .+. | ..+|++.. ..+|+++|++++++|++.++++.
T Consensus 418 ~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~~ 472 (475)
T 3k40_A 418 EALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEME 472 (475)
T ss_dssp HHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 56888888888653 321 3 45999965 34599999999999999887653
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.5e-16 Score=150.84 Aligned_cols=232 Identities=16% Similarity=0.134 Sum_probs=142.2
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh---hcccCCc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA---ASLSGLP 151 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~---~~~~~~~ 151 (447)
..+...++++++++++ +.+.+++++||++|+..+++.+. .+++.||+.++.|++..... ....|..
T Consensus 80 ~~p~~~~le~~lA~l~---g~~~~v~~~sG~~Ai~~al~al~--------~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~ 148 (430)
T 3ri6_A 80 SNPTVEDLEQRLKNLT---GALGVLALGSGMAAISTAILTLA--------RAGDSVVTTDRLFGHTLSLFQKTLPSFGIE 148 (430)
T ss_dssp CCHHHHHHHHHHHHHH---TCSEEEEESCHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHHTHHHHTTCE
T ss_pred CCHHHHHHHHHHHHHH---CCCcEEEECCHHHHHHHHHHHHh--------CCCCEEEEcCCCchhHHHHHHHHHHHcCCE
Confidence 5677889999999987 34568888999999999998763 34578999999998865321 1111211
Q ss_pred cccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHH
Q 013204 152 ALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 231 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~ 231 (447)
+..++.. +++++++.+. +++++|++|..++..|.+.+ +++|.
T Consensus 149 ------------~~~v~~~------------------d~~~l~~ai~----~~t~~v~~e~p~NptG~~~d----l~~i~ 190 (430)
T 3ri6_A 149 ------------VRFVDVM------------------DSLAVEHACD----ETTKLLFLETISNPQLQVAD----LEALS 190 (430)
T ss_dssp ------------EEEECTT------------------CHHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHH
T ss_pred ------------EEEeCCC------------------CHHHHHHhhC----CCCeEEEEECCCCCCCeecC----HHHHH
Confidence 1122221 1366777664 36788899988888887776 99999
Q ss_pred HHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCcccceeEEEe--Ch-hH---------------
Q 013204 232 AVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSAYMPIGAILV--SP-EV--------------- 291 (447)
Q Consensus 232 ~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg~~~~g~~~~--~~-~~--------------- 291 (447)
++|++||+++|+||+++ .+.. .....+| .|++ +++|.++|++..+|.++. .+ .+
T Consensus 191 ~la~~~g~~livD~a~~-~~~~---~~~~~~g--~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~ 264 (430)
T 3ri6_A 191 KVVHAKGIPLVVDTTMT-PPYL---LEAKRLG--VDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGP 264 (430)
T ss_dssp HHHHTTTCCEEEECTTS-CTTT---CCGGGGT--CSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGG
T ss_pred HHHHHcCCEEEEECCCc-cccc---CChHHcC--CEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhch
Confidence 99999999999999987 2221 1112234 4655 567999874334444443 22 12
Q ss_pred ---HHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEe-------
Q 013204 292 ---SEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIR------- 361 (447)
Q Consensus 292 ---~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~------- 361 (447)
++..... .........+++.+..++..++.+. ...++..++.+++.+.|++. |.+..+.
T Consensus 265 ~~~i~~~~~~------~~~~~g~~~~~~~a~l~l~~l~~l~--~r~~~~~~na~~la~~L~~~---p~v~~V~~P~l~~~ 333 (430)
T 3ri6_A 265 MAFLYKARKE------VFQNLGPSLSPHNAYLQSLGLETMA--LRIERSCQNAQELAHWLLSI---PQVKCVNHPSLPDS 333 (430)
T ss_dssp GHHHHHHHHT------HHHHHCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTC---TTCEEEECTTSTTS
T ss_pred hhHHHHHHHH------HHHhcCCCCCHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHhCC---CCccEEECCCCCCC
Confidence 1111100 0000122345666665555565442 23455566667777777654 3333222
Q ss_pred ----------eeee-EEEEEee
Q 013204 362 ----------GTGL-ILGTEFA 372 (447)
Q Consensus 362 ----------~~g~-~~~i~~~ 372 (447)
|.|. ++++.+.
T Consensus 334 p~~~~~~~~~g~Gg~~lsf~l~ 355 (430)
T 3ri6_A 334 PFYAIAKRQFRYAGSILTFELE 355 (430)
T ss_dssp TTHHHHHHHCSSCCSEEEEECS
T ss_pred ccHHHHHHhCCCCceEEEEEEC
Confidence 3477 8888886
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.7e-15 Score=144.28 Aligned_cols=318 Identities=13% Similarity=0.090 Sum_probs=190.4
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHH-HHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcc
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKEL-LEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKK 128 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~ 128 (447)
.+|++.+++.+.++...+. ...+...++++++ ++++. ..+++++++||++|+..+++.+. -..++
T Consensus 14 ~~~~i~~a~~~~~~~~~~~-----~~~~~~~~l~~~~~a~~~g--~~~~~v~~~sgt~al~~al~~l~-------~~~Gd 79 (377)
T 3ju7_A 14 PVIEYLDELKEIDASHIYT-----NYGPINQRFEQTIMSGFFQ--NRGAVTTVANATLGLMAAIQLKK-------RKKGK 79 (377)
T ss_dssp CGGGGHHHHHHHHHHTCCS-----SSCHHHHHHHHHHHHHTST--TCSEEEEESCHHHHHHHHHHHHS-------CTTCC
T ss_pred CcHHHHHHHHHHHHcCCcc-----cCCHHHHHHHHHHHHHHhC--CCCeEEEeCCHHHHHHHHHHHcC-------CCCcC
Confidence 4578899999988765322 1245677899999 88863 25689999999999999998751 13457
Q ss_pred eEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC-CcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEE
Q 013204 129 KFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP-HYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAA 207 (447)
Q Consensus 129 ~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~ 207 (447)
+||+..+.|.+........+..+. .++.. +.+. .+++++++.+.... ..+++
T Consensus 80 ~Vi~~~~~~~~~~~~~~~~G~~~~-------------~v~~~~~~~~-------------~d~~~l~~~i~~~~-~~tk~ 132 (377)
T 3ju7_A 80 YALMPSFTFPATPLAAIWCGLEPY-------------FIDISIDDWY-------------MDKTVLWDKIEELK-EEVAI 132 (377)
T ss_dssp EEEEESSSCTHHHHHHHHTTCEEE-------------EECBCTTTCS-------------BCHHHHHHHHHHHG-GGEEE
T ss_pred EEEECCCCcHHHHHHHHHcCCEEE-------------EEecCCccCC-------------cCHHHHHHHHhcCC-CCceE
Confidence 899999999876544433222111 11111 0000 01377887773211 12666
Q ss_pred EEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccC-CCCCCeeeec----ccCCCcccce
Q 013204 208 FIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKY-SIKPDLVSFA----KALSSAYMPI 282 (447)
Q Consensus 208 vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~-~~~~d~v~~s----K~l~gg~~~~ 282 (447)
|+ |++. .|...+ +++|.++|+ ||+++|.|++|+ +|.. +..... +...|+.++| |.+++| ..
T Consensus 133 v~--~~~~-~G~~~~----~~~i~~la~-~~~~vi~D~a~a-~g~~---~~~~~~g~~~~d~~~~S~~~~K~l~~g--~g 198 (377)
T 3ju7_A 133 VV--PYAT-FGSWMN----LEEYEELEK-KGVPVVVDAAPG-FGLM---NGGMHYGQDFSGMIIYSFHATKPFGIG--EG 198 (377)
T ss_dssp EC--CBCG-GGBCCC----CHHHHHHHH-TTCCBEEECTTC-TTCE---ETTEETTTTCSSEEEEECBTTSSSCCB--SC
T ss_pred EE--EECC-CCCccC----HHHHHHHHh-cCCEEEEECCCc-cCCe---ECCEeccCCCCcEEEEECCCCCcCCCC--Cc
Confidence 66 3333 355554 899999999 999999999997 4422 111122 1225666654 888874 45
Q ss_pred eEEEe-ChhHHHHhhhccCCC-----CccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCC--
Q 013204 283 GAILV-SPEVSEVIHSQSNTL-----GSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-- 354 (447)
Q Consensus 283 g~~~~-~~~~~~~~~~~~~~~-----~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~-- 354 (447)
|+++. ++++.+.+......- .....+..+..+++.++.+++.++.+ +...++.+++.+++.+.|+++...
T Consensus 199 G~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l--~~~~~~~~~~~~~~~~~L~~~~~~~~ 276 (377)
T 3ju7_A 199 GLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKW--DDKLKERTRISEWYKQLLQSNGLMKK 276 (377)
T ss_dssp EEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred EEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCCccc
Confidence 66665 566766655321100 01112234556677777666666543 345677777888888888776321
Q ss_pred CceeeE--eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee--------------------------C
Q 013204 355 PIIGEI--RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS--------------------------G 406 (447)
Q Consensus 355 ~~~~~~--~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--------------------------g 406 (447)
+..... .....++.+.+.+.. ....+.+.|.++||.++.. .
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 345 (377)
T 3ju7_A 277 GWQLQKTEAVIQQFMPILCPEEV-----------RNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAK 345 (377)
T ss_dssp TCBCCCCSCBCCSSEEEECCTTS-----------CHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHH
T ss_pred cccCCCCCcceEEEEEEEeCChh-----------hHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHh
Confidence 111110 011112233332211 1456889999999987631 0
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 407 DNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 407 ~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+.+|+......|++|++++++.|++++..
T Consensus 346 ~~l~lp~~~~~t~~di~~v~~~l~~~~~~ 374 (377)
T 3ju7_A 346 RIVSLPLWEGMTKEIVEQIVICLGQKVVS 374 (377)
T ss_dssp HEEEECCCTTCCHHHHHHHHHHHTC----
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 35899988899999999999999887765
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-16 Score=151.15 Aligned_cols=330 Identities=12% Similarity=0.067 Sum_probs=188.7
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcc-cc---cCc---CCChHHHHHHHHHHHhcCcCCCC-eE-EEeC
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY-HS---FWN---RTTKPSLDLAKELLEMFTASKMA-KV-FFTN 102 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~---~~~---~~~~~~~~l~~~l~~~~~~~~~~-~v-~~~~ 102 (447)
++.|+|..+. ...+|++++++.+.+.+.... .+ ... ...+...++++++++.+. .+.+ ++ ++++
T Consensus 3 ~~~~l~~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g-~~~~~~~i~~t~ 75 (362)
T 2c0r_A 3 ERAYNFNAGP------AALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLG-NPTGYKVLFIQG 75 (362)
T ss_dssp CCCEECCSSS------CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTT-CCSSEEEEEESS
T ss_pred cceeeccCCC------CCCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhC-CCCCcEEEEECC
Confidence 4566665432 236899999999987542110 00 000 012245677788887763 3332 64 6779
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccch-hhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCC
Q 013204 103 SGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGST-LIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGET 181 (447)
Q Consensus 103 sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (447)
||++|+..+++.+. .++++|++.++.+++.. .......|... .++.+....+.. ..+
T Consensus 76 g~t~a~~~~~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~-------------~v~~~~~~~~~~-~~~ 133 (362)
T 2c0r_A 76 GASTQFAMIPMNFL--------KEGQTANYVMTGSWASKALKEAKLIGDTH-------------VAASSEASNYMT-LPK 133 (362)
T ss_dssp HHHHHHHHHHHHHC--------CTTCEEEEEECSHHHHHHHHHHHHHSCEE-------------EEEECGGGTTCS-CCC
T ss_pred CchHHHHHHHHhcC--------CCCCeEEEEecCcHhHHHHHHHHHhCCeE-------------EEeccccccccc-CCC
Confidence 99999999998763 23467877776655542 11111112111 111110000000 000
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccccccc
Q 013204 182 EEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDK 261 (447)
Q Consensus 182 ~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~ 261 (447)
.++++ + . +++++|++.++++.+|....+ +++| ||+++|+||+|+ +|.. .....
T Consensus 134 --------~~~~~--i---~-~~t~~v~~~~~~n~tG~~~~~---l~~i------~~~~vivD~a~~-~~~~--~~~~~- 186 (362)
T 2c0r_A 134 --------LQEIQ--L---Q-DNAAYLHLTSNETIEGAQFKA---FPDT------GSVPLIGDMSSD-ILSR--PFDLN- 186 (362)
T ss_dssp --------GGGCC--C---C-TTEEEEEEESEETTTTEECSS---CCCC------TTSCEEEECTTT-TTSS--CCCGG-
T ss_pred --------HHHcc--c---C-CCcCEEEEeCCcCccceeccc---cccc------CCCEEEEEChhh-ccCC--ccchh-
Confidence 01111 1 2 356667766666667764222 4444 899999999997 4322 11111
Q ss_pred CCCCCCeee--ecccCCCcccceeEEEeChhHHHHhhhccCCCCcc-------CcCCCCCCcHHHHHHHHHHHHHHhh--
Q 013204 262 YSIKPDLVS--FAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSF-------SHGFTYSGHPVSCAVAIEALKIYKE-- 330 (447)
Q Consensus 262 ~~~~~d~v~--~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~t~~~~~~~~~aa~a~l~~~~~-- 330 (447)
.. |+++ ++|.++. .++|++++++++++.+..... ..+ .....++.++.++.++.++++.+.+
T Consensus 187 -~~--d~~~~s~~K~~g~--~G~G~l~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~ 259 (362)
T 2c0r_A 187 -QF--GLVYAGAQKNLGP--SGVTVVIVREDLVAESPKHLP--TMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERG 259 (362)
T ss_dssp -GC--SEEEEETTTTTCC--SSCEEEEEEGGGSSSCCTTSC--GGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTT
T ss_pred -HC--cEEEEeccccccC--cCcEEEEEcHHHHhhccccCc--hHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhC
Confidence 12 7664 6798863 458999999988766542100 000 0122346677788888888887654
Q ss_pred --hcHHHHHHHHHHHHHHhHhhccCC-CceeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC
Q 013204 331 --RNIVEQVNKIAPKFQDGVKAFSDS-PIIGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG 406 (447)
Q Consensus 331 --~~~~~~~~~~~~~l~~~L~~l~~~-~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g 406 (447)
++..++.+++++++++.|+++... ...... ...+.++.+.+.... ....+.+.|.++||.+.++.
T Consensus 260 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~L~~~gi~~~~g~ 328 (362)
T 2c0r_A 260 GLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEE-----------LEKEFVKASEQEGFVGLKGH 328 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHH-----------HHHHHHHHHHHTTEESCBCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCccccCCChHHcCCcEEEEEcCCcc-----------hHHHHHHHHHHCCCeeccCC
Confidence 345677777888888888776211 111100 112334445443210 24568888999999876542
Q ss_pred ---CEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 407 ---DNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 407 ---~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+.+|+++...+++++++++++.|++.+++
T Consensus 329 ~~~~~iRis~~~~~~~e~i~~l~~~l~~~~~~ 360 (362)
T 2c0r_A 329 RSVGGLRASIYNAVPYESCEALVQFMEHFKRS 360 (362)
T ss_dssp TTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 46999988888999999999999988764
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.4e-16 Score=152.49 Aligned_cols=277 Identities=12% Similarity=0.087 Sum_probs=158.8
Q ss_pred HHHHHHHHHhcC----cCCC-CeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc
Q 013204 80 LDLAKELLEMFT----ASKM-AKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154 (447)
Q Consensus 80 ~~l~~~l~~~~~----~~~~-~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 154 (447)
.++.+.+++++. .... +++++++|+++|+..+++.+... |+.+...|++.+|.|.++.......+.... .
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~----Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~-~ 145 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSSL----ARSQPVSVVAAAPFYSTYVEETTYVRSGMY-K 145 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHHHT----SSSSSEEEEECSSCCTHHHHHHHTTCBTTE-E
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhcCC----CCCCcceEEEcCCCchhHHHHHHHcCCeEE-E
Confidence 556666666542 1123 58999999999999999876421 111112899999999887544433221110 0
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
...+. +.++ .++...++++.|.|++ |.+.. +|++
T Consensus 146 ----------~~~d~---------------------~~l~------~~~~k~v~l~~p~NPt-G~~~~------~l~~-- 179 (391)
T 3bwn_A 146 ----------WEGDA---------------------WGFD------KKGPYIELVTSPNNPD-GTIRE------TVVN-- 179 (391)
T ss_dssp ----------EEEES---------------------TTCC------CCSCEEEEEESSCTTT-CCCCC------CCC---
T ss_pred ----------ecCCH---------------------HHcC------CCCCEEEEECCCCCCC-chhHH------HHHH--
Confidence 00110 1111 1223334455555555 44442 2333
Q ss_pred HhcC--CEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCcccceeEEEe-ChhHHHHhhhccCCCCccCcCC
Q 013204 235 KKYD--ILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSAYMPIGAILV-SPEVSEVIHSQSNTLGSFSHGF 309 (447)
Q Consensus 235 ~~~g--~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~ 309 (447)
++|+ +++|.||+|.. + ....... ....+++ +|||.++..++++|++++ ++++++.+... ....
T Consensus 180 ~~~~~~~~ii~De~y~~-~---~~~~l~~-~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~-------~~~~ 247 (391)
T 3bwn_A 180 RPDDDEAKVIHDFAYYW-P---HYTPITR-RQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEY-------IIVN 247 (391)
T ss_dssp ----CCCEEEEECTTCS-T---TTSCCCC-CBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHHH-------HHHH
T ss_pred HhhcCCCEEEEeCCCCC-C---CCCcccc-CCCCeEEEEechhhcCCCccceEEEEecCHHHHHHHHHH-------hccc
Confidence 2255 99999999962 2 1111111 1112333 689988754499999997 88888877632 1112
Q ss_pred CCCCcHHHHHHHHHHHHHHh------------hhcHHHHHHHHHHHHHHhHhhccCCCcee---e--------EeeeeeE
Q 013204 310 TYSGHPVSCAVAIEALKIYK------------ERNIVEQVNKIAPKFQDGVKAFSDSPIIG---E--------IRGTGLI 366 (447)
Q Consensus 310 t~~~~~~~~~aa~a~l~~~~------------~~~~~~~~~~~~~~l~~~L~~l~~~~~~~---~--------~~~~g~~ 366 (447)
+++.+.+++.++.++|+... -++..+.++++.+.+.+.|+++....+.. . ....|.+
T Consensus 248 ~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~ 327 (391)
T 3bwn_A 248 SIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAF 327 (391)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSE
T ss_pred ccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceE
Confidence 35567888888888886432 12345566667777777776652111100 0 1122445
Q ss_pred EEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee------CCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 367 LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS------GDNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 367 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+.+.+.+.. .+.+.+.++||.+.++ .+.+|++ +..++++|++++++|++++++
T Consensus 328 ~~~~~~~~~--------------~~~~~l~~~gV~v~pg~~fg~~~~~iRis--~~~~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 328 AWLGTKEET--------------DLVSELRRHKVMSRAGERCGSDKKHVRVS--MLSREDVFNVFLERLANMKLI 386 (391)
T ss_dssp EEEEESSSC--------------CHHHHHHHTTEECEEGGGGTCCTTEEEEE--SCSCHHHHHHHHHHHHSCC--
T ss_pred EEecCCcHH--------------HHHHHHHHCCEEEccCCCCCCCCCEEEEE--ecCCHHHHHHHHHHHHHHHHh
Confidence 666665311 1556778899999985 3579999 446999999999999988754
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-15 Score=148.14 Aligned_cols=297 Identities=12% Similarity=-0.019 Sum_probs=167.0
Q ss_pred CCHHHHHHHHHHHhc-CC-cccccCcCCChHHHHHHHHHHHhcCcCCCCeEEE---eCChhhHHHHHHHHHHHHHHhcCC
Q 013204 50 SEPRLVAAATAQLNT-LP-FYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFF---TNSGSEANDTQVKLVWYYNNALGR 124 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~-~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~---~~sGseA~~~Al~~~~~~~~~~~~ 124 (447)
+++++++++.+.... .. ........+.....++++.+++.+. .+...+ ++||++|++.+++.+.
T Consensus 36 n~~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g---~~~~~~~i~~~sGt~Ai~~al~al~-------- 104 (431)
T 3ht4_A 36 NQFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFG---AEAGLVRPQIISGTHAISTALFGIL-------- 104 (431)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTT---CSEECCBTTSCSHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHhC---CCcccccceeeCHHHHHHHHHHHhC--------
Confidence 467888887775321 11 1111122345667789999998873 333333 5699999999998553
Q ss_pred CCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCc
Q 013204 125 PNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPET 204 (447)
Q Consensus 125 ~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~ 204 (447)
..++.|++.++..|+.+...+..++. +...+......+..++....+. .+++++++.+. ++
T Consensus 105 ~~Gd~Vl~~~~~~y~~~~~~~~l~g~--~~~~~~~~G~~~~~v~~~~~~~-------------~d~e~l~~~l~----~~ 165 (431)
T 3ht4_A 105 RPGDELLYITGKPYDTLEEIVGVRGK--GVGSFKEYNIGYNAVPLTEGGL-------------VDFEAVAAAIH----SN 165 (431)
T ss_dssp CTTCEEEECSSSCCTTHHHHTTSSSC--SSSCSGGGTCEEEECCBCTTSS-------------BCHHHHHHHCC----TT
T ss_pred CCCCEEEEeCCCCchhHHHHHhhccc--ccchHHHcCCEEEEeCCCCCCC-------------cCHHHHHhhcC----CC
Confidence 33478888873444555444433322 1111111111122223211110 11367777664 36
Q ss_pred EEEEEEcc-ccCCCCCccCChhHHHHHHHHHHh--cCCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCcc
Q 013204 205 IAAFIAEP-VIGAGGVIPPPATYFEKVQAVVKK--YDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSAY 279 (447)
Q Consensus 205 ~a~vi~ep-v~~~~G~~~~~~~~l~~l~~l~~~--~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg~ 279 (447)
+++|++++ .++.+| ...+.+.+++|+++|++ ||+++|+||+|+.+.....+. .++ .|++ +++|.++|++
T Consensus 166 tk~V~i~~sp~np~~-~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~---~~g--~Di~~~S~sK~lgg~~ 239 (431)
T 3ht4_A 166 TKMIGIQRSKGYATR-PSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPC---HVG--ADLMAGSLIKNPGGGI 239 (431)
T ss_dssp EEEEEEECSCTTSSS-CCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGG---GTT--CSEEEEETTSGGGTTT
T ss_pred CeEEEEECCCCCCCC-CcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCcc---ccC--CeEEEcCccccCCCCC
Confidence 78888885 333333 34567789999999999 999999999998764333222 123 4665 5789998732
Q ss_pred -cceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCce-
Q 013204 280 -MPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPII- 357 (447)
Q Consensus 280 -~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~- 357 (447)
.+.|++++++++++.+.......+ .+.+..+++..+.+++..++.+ +...++..++.+++++.|+++. ..+.
T Consensus 240 ~~~GG~v~~~~~li~~l~~~~~~~~---~g~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~a~~l~~~L~~~g-~~v~p 313 (431)
T 3ht4_A 240 VKTGGYIVGKEQYVEACAYRLTSPG---IGAEAGASLYSLQEMYQGFFLA--PHVAGQALKGAIFTAAFLEKLG-MNTSP 313 (431)
T ss_dssp CSSCEEEEECHHHHHHHHHHHSCTT---TTTSCSCCCSCSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHT-CCEES
T ss_pred CCceEEEEecHHHHHHHHHHhccCC---cccccCccHHHHHHHHhHhhhH--HHHHHHHHHHHHHHHHHHHhCc-CEecC
Confidence 456889999999888764211111 1112222121122344445433 3456777788888888888762 1111
Q ss_pred -eeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcC
Q 013204 358 -GEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHG 399 (447)
Q Consensus 358 -~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 399 (447)
...++.+.++.+.+.+.. ....+.+.|.+..
T Consensus 314 ~~~~~~~~li~~i~l~~~~-----------~~~~~~~~l~~~~ 345 (431)
T 3ht4_A 314 AWNAPRTDLIQSVQFDDKD-----------RMIAFCQAIQYAS 345 (431)
T ss_dssp CTTSCCSSSCCEEECCCHH-----------HHHHHHHHHHHTS
T ss_pred CCCCCCccEEEEEEeCCHH-----------HHHHHHHHHHhcC
Confidence 112234446667665321 2456777777753
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=9.8e-15 Score=151.35 Aligned_cols=321 Identities=13% Similarity=0.066 Sum_probs=170.5
Q ss_pred hHHHHHHHHHHHhcCcCCCCeEE-EeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCc-ccc
Q 013204 77 KPSLDLAKELLEMFTASKMAKVF-FTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLP-ALH 154 (447)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~~v~-~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~-~~~ 154 (447)
....++++.+++++. .+..+ +++|+++||..++.... ..++.||+..+.|+....+.+..+|.. .+.
T Consensus 173 ~~i~e~e~~lA~~~g---ae~~i~v~nGtt~an~~ai~al~--------~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v 241 (730)
T 1c4k_A 173 GPAVAAEKHAARVYN---ADKTYFVLGGSSNANNTVTSALV--------SNGDLVLFDRNNHKSVYNSALAMAGGRPVYL 241 (730)
T ss_dssp THHHHHHHHHHHHTT---CSEEEEESSHHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHTTTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHC---CCcEEEECCHHHHHHHHHHHHhc--------CCCCEEEEcCCchHHHHHHHHHHCCCEEEEE
Confidence 456788888888873 33444 44555599999998763 234678887776655444323334432 111
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhh------CCCc-EEEEEEccccCCCCCccCChhHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE------GPET-IAAFIAEPVIGAGGVIPPPATYF 227 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~------~~~~-~a~vi~epv~~~~G~~~~~~~~l 227 (447)
............++. +.+. .+.+++.+... .+.. ..+++++| +. .|.+.+ +
T Consensus 242 ~~~~~~~~i~g~id~-------------e~L~---~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~-~G~v~d----l 299 (730)
T 1c4k_A 242 QTNRNPYGFIGGIYD-------------SDFD---EKKIRELAAKVDPERAKWKRPFRLAVIQLG-TY-DGTIYN----A 299 (730)
T ss_dssp CEEECTTCCEEEECG-------------GGSC---HHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CT-TSEEEC----H
T ss_pred eCCccccCccCCCCH-------------HHHh---hhHHHHHhhcCCcccccccCCCeEEEEECC-CC-CCeecC----H
Confidence 100000000000110 1000 13336666532 1111 23445555 33 566665 9
Q ss_pred HHHHHHHHhcCCEEEEehhhcCC-Cccc--c-cccc--ccCCCC-CC-eee--ecccCCCcccceeEEEeChhHH-----
Q 013204 228 EKVQAVVKKYDILFIADEVICAF-GRLG--T-MFGC--DKYSIK-PD-LVS--FAKALSSAYMPIGAILVSPEVS----- 292 (447)
Q Consensus 228 ~~l~~l~~~~g~~li~DEv~~g~-g~~g--~-~~~~--~~~~~~-~d-~v~--~sK~l~gg~~~~g~~~~~~~~~----- 292 (447)
++|.++|++||+++|+||+|.+. +..+ . .... +.++.. ++ +++ ++|.++|. ...|+++.+++.+
T Consensus 300 ~~I~~la~~~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~-~~gg~I~v~~~~l~g~~~ 378 (730)
T 1c4k_A 300 HEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGF-SQTSQIHKKDSHIKGQLR 378 (730)
T ss_dssp HHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCC-TTCEEEEEECGGGTTSTT
T ss_pred HHHHHHHHHcCCeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCC-CCEEEEEecchhhcCccc
Confidence 99999999999999999999632 1111 1 0111 122332 11 554 57998762 1234554433321
Q ss_pred ----HHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHhHhh-ccCCCceee-E---
Q 013204 293 ----EVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQDGVKA-FSDSPIIGE-I--- 360 (447)
Q Consensus 293 ----~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~-l~~~~~~~~-~--- 360 (447)
..+.. .+....+.++++..+++..++++.+.. .++.++..++.+++++.|++ +.+..+... .
T Consensus 379 ~i~~~~~~~------~~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~ 452 (730)
T 1c4k_A 379 YCDHKHFNN------SFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNG 452 (730)
T ss_dssp CCCHHHHHH------HHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETT
T ss_pred ccCHHHHHH------HHHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEcccccccc
Confidence 11111 001112344566666666666665543 44667888888889998877 432221110 0
Q ss_pred -----------------------------ee--eee-E-----EEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEE
Q 013204 361 -----------------------------RG--TGL-I-----LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR 403 (447)
Q Consensus 361 -----------------------------~~--~g~-~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~ 403 (447)
.+ .+. + +.+..+........+......+..+.+.|.++||++.
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~ 532 (730)
T 1c4k_A 453 KKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPE 532 (730)
T ss_dssp EEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCS
T ss_pred ccccccccccccccchhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEE
Confidence 00 010 1 2232211000000000000124568889999999988
Q ss_pred eeC-CEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 404 VSG-DNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 404 ~~g-~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
..+ ..+|++++..+|++++++++++|.+..+++.
T Consensus 533 ~~~~~~ir~~~s~g~t~e~i~~Ll~aL~~i~~~~~ 567 (730)
T 1c4k_A 533 KSDLNSILFLMTPAETPAKMNNLITQLLQLQRLIE 567 (730)
T ss_dssp EECSSEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 765 5699999999999999999999999887664
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.9e-15 Score=141.58 Aligned_cols=327 Identities=10% Similarity=-0.014 Sum_probs=187.6
Q ss_pred CCCCCHHHHHHHHHHHhcCCccc-ccC--cC----CChHHHHHHHHHHHhcCcCCCCeEEEe-CChhhHHHHHHHHHHHH
Q 013204 47 LGGSEPRLVAAATAQLNTLPFYH-SFW--NR----TTKPSLDLAKELLEMFTASKMAKVFFT-NSGSEANDTQVKLVWYY 118 (447)
Q Consensus 47 lG~~~p~v~~a~~~~~~~~~~~~-~~~--~~----~~~~~~~l~~~l~~~~~~~~~~~v~~~-~sGseA~~~Al~~~~~~ 118 (447)
.+.-+|+|+++|.+.+.+..... +.. .. ..+...+..+.+++++.-.+..+|+|+ .|||++++.+++.+...
T Consensus 21 ~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~~ 100 (377)
T 3e77_A 21 QSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGL 100 (377)
T ss_dssp SCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGGG
T ss_pred cCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccCC
Confidence 34578999999999886422111 100 11 123345566677777743233578884 79999999999865311
Q ss_pred HHhcCCCCcceEEEEcCCCccchhhhh-cccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHH
Q 013204 119 NNALGRPNKKKFIARQKSYHGSTLIAA-SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLI 197 (447)
Q Consensus 119 ~~~~~~~~~~~vi~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l 197 (447)
.+++++++...+.++...... ...|... ..++++..+.. .+ ++++..+
T Consensus 101 ------~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~------------~~~~~~~~~~~-~~------------~~~~~~i 149 (377)
T 3e77_A 101 ------KAGRCADYVVTGAWSAKAAEEAKKFGTIN------------IVHPKLGSYTK-IP------------DPSTWNL 149 (377)
T ss_dssp ------STTCEEEECCCSHHHHHHHHHHTTTSEEE------------ECSCCCSSSCS-CC------------CGGGCCC
T ss_pred ------CCCCeEEEEECCHHHHHHHHHHHHhCCce------------EEeccCCCcCC-CC------------ChHHhcc
Confidence 113567666666655432211 1111110 11111110000 00 1122111
Q ss_pred HhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec--ccC
Q 013204 198 LKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KAL 275 (447)
Q Consensus 198 ~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l 275 (447)
. +++++|.+..+.+..|.+.| + +|+++|+++++|-+|+ +|.. ++..+.++ ++++| |.+
T Consensus 150 ---~-~~t~lV~~~h~et~tG~~~p----i-----i~~~~~~~~~vD~~q~-~g~~--~id~~~~~----~~~~s~~K~~ 209 (377)
T 3e77_A 150 ---N-PDASYVYYCANETVHGVEFD----F-----IPDVKGAVLVCDMSSN-FLSK--PVDVSKFG----VIFAGAQKNV 209 (377)
T ss_dssp ---C-TTCSCEEEESEETTTTEECS----S-----CCCCTTCCEEEECTTT-TTSS--CCCGGGCS----EEEEEGGGTT
T ss_pred ---C-CCccEEEEeCccCchheEch----h-----hhccCCCEEEEEcccc-cCCC--CCchhhcC----EEEEeccccc
Confidence 2 34556666666666788877 3 5889999999999997 5433 33344444 34454 888
Q ss_pred CCcccceeEEEeChhHHHHhhhccCCCCcc------CcCCC-CCCcHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHH
Q 013204 276 SSAYMPIGAILVSPEVSEVIHSQSNTLGSF------SHGFT-YSGHPVSCAVAIEALKIYKER----NIVEQVNKIAPKF 344 (447)
Q Consensus 276 ~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~t-~~~~~~~~~aa~a~l~~~~~~----~~~~~~~~~~~~l 344 (447)
|+ .++|+++.++++.+.+... .+..+ ....+ .+++..++.+..++++.+.+. ...++.+++.+++
T Consensus 210 -gp-~G~g~l~~~~~~l~~~~~~--~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l 285 (377)
T 3e77_A 210 -GS-AGVTVVIVRDDLLGFALRE--CPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTI 285 (377)
T ss_dssp -SC-TTCEEEEEETTSCSCCCTT--SCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred -CC-CccEEEEEcHHHHhhccCC--CCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 55 7899999988875443211 00000 01112 345566666677888877654 3556777788888
Q ss_pred HHhHhhccCCCc-eeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC---CEEEEecCCCCCH
Q 013204 345 QDGVKAFSDSPI-IGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG---DNIMMSPPFIMSP 419 (447)
Q Consensus 345 ~~~L~~l~~~~~-~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g---~~iR~~~~~~~t~ 419 (447)
++.|+++++..+ .... ...+.++.+.++..... ..+...+...+.++||.+.++. +.+|+++...+|+
T Consensus 286 ~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~~-------~~~~~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~ 358 (377)
T 3e77_A 286 YEIIDNSQGFYVCPVEPQNRSKMNIPFRIGNAKGD-------DALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTI 358 (377)
T ss_dssp HHHHHTSTTSEECCSCGGGBCSSEEEEEESSTTCC-------HHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCH
T ss_pred HHHHHhcCCceecCCCHHHcCCcEEEEEcCCCCCc-------hhHHHHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCH
Confidence 888877632211 1011 11233456666542110 0122346777888999886652 4599999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 013204 420 EEVDELISKYGKALKA 435 (447)
Q Consensus 420 e~i~~~~~~l~~~l~~ 435 (447)
+||+++++.|++++++
T Consensus 359 edId~l~~al~~~~~~ 374 (377)
T 3e77_A 359 EDVQKLAAFMKKFLEM 374 (377)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988764
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5e-15 Score=142.91 Aligned_cols=331 Identities=11% Similarity=0.008 Sum_probs=181.0
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcc-cc------cCcCCChHHHHHHHHHHHhcCcCCCCeEEE-eCCh
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY-HS------FWNRTTKPSLDLAKELLEMFTASKMAKVFF-TNSG 104 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~------~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~-~~sG 104 (447)
+.|+|..+.. .-+|+|+++|.+.+.+.... .+ ......+...+..+.+++++.-.+..+|+| ++||
T Consensus 27 ~~yl~~agpt------~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~ 100 (386)
T 3qm2_A 27 QVFNFSSGPA------MLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGG 100 (386)
T ss_dssp CCEECCSSSC------CCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCT
T ss_pred cCccccCCCC------CCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCc
Confidence 4688865442 26899999998776542111 00 000112344566677888774323357888 6899
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhc-ccCCccccCCCCCCCCcceecCCC--CcccCCCCCCC
Q 013204 105 SEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAAS-LSGLPALHQKFDLPAPFVLHTDCP--HYWRYAHPGET 181 (447)
Q Consensus 105 seA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 181 (447)
|++++.+++.+. ..++++++...+.++....... ..| . +..++++ .......
T Consensus 101 T~a~n~ai~~l~--------~~gd~v~~~~~~~~~~~~~~~a~~~G-~------------v~~v~~~~~~~G~~~~---- 155 (386)
T 3qm2_A 101 RGQFAGVPLNLL--------GDKTTADYVDAGYWAASAIKEAKKYC-A------------PQIIDAKITVDGKRAV---- 155 (386)
T ss_dssp THHHHHHHHHHC--------TTCCEEEEEESSHHHHHHHHHHTTTS-E------------EEEEECEEEETTEEEE----
T ss_pred hHHHHHHHHhcc--------CCCCeEEEEeCCHHHHHHHHHHHHhC-C------------eEEEecCcccCCCCCC----
Confidence 999999998653 2235666555555554222111 111 1 1122221 0000000
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCc-cCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccc
Q 013204 182 EEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVI-PPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCD 260 (447)
Q Consensus 182 ~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~-~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~ 260 (447)
++++++.+. +++++|++..+.+..|.+ .| +++|. +|+++++|-+|+ +|.. +...+
T Consensus 156 --------~~~~~~~l~----~~t~lV~~~h~et~tG~~i~p----i~~i~-----~g~~~~vDa~qs-~g~~--pidv~ 211 (386)
T 3qm2_A 156 --------KPMREWQLS----DNAAYLHYCPNETIDGIAIDE----TPDFG-----PEVVVTADFSST-ILSA--PLDVS 211 (386)
T ss_dssp --------CCGGGCCCC----TTCSCEEECSEETTTTEECCC----CCCCC-----TTCCEEEECTTT-TTSS--CCCGG
T ss_pred --------chHHHhhcC----CCCcEEEEECCcCCcCEecCc----hhhhc-----CCCEEEEEcccc-cCCC--CCCcc
Confidence 022332222 345667777777777875 55 44443 799999999997 5433 33344
Q ss_pred cCCCCCCeeeec--ccCCCcccceeEEEeChhHHHHhhhccCCC---Ccc-CcCC-CCCCcHHHHHHHHHHHHHHhhh--
Q 013204 261 KYSIKPDLVSFA--KALSSAYMPIGAILVSPEVSEVIHSQSNTL---GSF-SHGF-TYSGHPVSCAVAIEALKIYKER-- 331 (447)
Q Consensus 261 ~~~~~~d~v~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~~~~---~~~-~~~~-t~~~~~~~~~aa~a~l~~~~~~-- 331 (447)
.++ ++++| |.+ |+ .++|+++.++++.+.+....... +.. .... ..+++..++.+..++++.+.+.
T Consensus 212 ~~~----~~~~s~hK~l-GP-~G~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG 285 (386)
T 3qm2_A 212 RYG----VIYAGAQKNI-GP-AGLTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGG 285 (386)
T ss_dssp GCS----EEEEETTTTT-CC-TTEEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTH
T ss_pred ccC----EEEEeccccc-CC-CccEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 443 44444 888 45 68999999988754332110000 000 0011 1133444555566677766543
Q ss_pred --cHHHHHHHHHHHHHHhHhhccCCCceeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC--
Q 013204 332 --NIVEQVNKIAPKFQDGVKAFSDSPIIGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-- 406 (447)
Q Consensus 332 --~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-- 406 (447)
+..++.+++.+++++.|+++.-+...... .....++.+.+++.. ....+...|.++||.+..+.
T Consensus 286 ~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~iv~f~~~~~~-----------~~~~~~~~L~~~gI~~~~g~~~ 354 (386)
T 3qm2_A 286 VAAMHKINQQKAELLYGVIDNSDFYRNDVAQANRSRMNVPFQLADNT-----------LDKVFLEESFAAGLHALKGHRV 354 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSEECCBCGGGBCSSEEEEEESSGG-----------GHHHHHHHHHHTTEECCBCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHcCceEEEEECCCcc-----------ccHHHHHHHHHCCCEEeCCCCC
Confidence 35567777888888888776110111111 112235566665311 12356677889999876542
Q ss_pred -CEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 407 -DNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 407 -~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+.+|+++...+|++|||++++.|++..++
T Consensus 355 ~~~iRiS~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 355 VGGMRASIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 45999999999999999999999988754
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-13 Score=134.70 Aligned_cols=256 Identities=12% Similarity=0.057 Sum_probs=149.1
Q ss_pred CCHHHHHHHHHHHh-cCCc-ccccCcCCChHHHHHHHHHHHhcCcCCCCeEEE---eCChhhHHHHHHHHHHHHHHhcCC
Q 013204 50 SEPRLVAAATAQLN-TLPF-YHSFWNRTTKPSLDLAKELLEMFTASKMAKVFF---TNSGSEANDTQVKLVWYYNNALGR 124 (447)
Q Consensus 50 ~~p~v~~a~~~~~~-~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~---~~sGseA~~~Al~~~~~~~~~~~~ 124 (447)
+++++++++.+... ...+ .++..........+|++.+++++ +.+..++ ++||++|+..++....
T Consensus 30 n~~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~---g~e~alv~p~~~sGt~Ai~~al~all-------- 98 (409)
T 3jzl_A 30 NQAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVF---KTEAALVRPQIISGTHAISTVLFGIL-------- 98 (409)
T ss_dssp HHHHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHH---TCSEEEEETTSCSHHHHHHHHHHHHC--------
T ss_pred hHHHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHh---CCCcEEEECCCccHHHHHHHHHHHhc--------
Confidence 45778888877541 1111 11112234455778899999887 3445666 8999999999998653
Q ss_pred CCcceEEEEc-CCCccchhhhhcccCC-ccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCC
Q 013204 125 PNKKKFIARQ-KSYHGSTLIAASLSGL-PALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGP 202 (447)
Q Consensus 125 ~~~~~vi~~~-~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~ 202 (447)
..++.||+.+ +.|.+..... ...+. .......+ ..+..++....+. .+++++++.+.
T Consensus 99 ~~GD~Vl~~~~~~y~~~~~~~-~~~g~~~~~l~~~G---~~~~~v~~~~~g~-------------~d~e~l~~ai~---- 157 (409)
T 3jzl_A 99 RPDDELLYITGQPYDTLEEIV-GIRKQGQGSLKDFH---IGYSSVPLLENGD-------------VDFPRIAKKMT---- 157 (409)
T ss_dssp CTTCEEEECSSSCCTTHHHHH-TSSSSSSSCTGGGT---CEEEECCCCTTSC-------------CCHHHHHHHCC----
T ss_pred CCCCEEEEeCCCCcHhHHHHH-hcccchhhHHHHcC---CEEEEeCCCCCCC-------------cCHHHHHHhcc----
Confidence 3357888887 7776654221 11110 00000001 1112233211110 01366776654
Q ss_pred CcEEEEEEcc----ccCCCCCccCChhHHHHHHHHHHh--cCCEEEEehhhcCCCccccccccccCCCCCCee--eeccc
Q 013204 203 ETIAAFIAEP----VIGAGGVIPPPATYFEKVQAVVKK--YDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKA 274 (447)
Q Consensus 203 ~~~a~vi~ep----v~~~~G~~~~~~~~l~~l~~l~~~--~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~ 274 (447)
+++++|++++ +++..|.+.+ +++|.++|++ ||+++|+||+|..+.....+ .....|++ +++|.
T Consensus 158 ~~tklV~i~~s~g~p~nptg~v~~----l~~I~~la~~~~~~~~livD~a~~~~~~~~~p-----~~~g~Div~~S~sK~ 228 (409)
T 3jzl_A 158 PKTKMIGIQRSRGYADRPSFTIEK----IKEMIVFVKNINPEVIVFVDNCYGEFVEYQEP-----PEVGADIIAGSLIKN 228 (409)
T ss_dssp TTEEEEEEECSCTTSSSCCCCHHH----HHHHHHHHHHHCTTCEEEEECTTCTTTSSCCS-----GGGTCSEEEEETTSG
T ss_pred CCCeEEEEECCCCCCCCCcCcccc----HHHHHHHHHhhCCCCEEEEeCCcccccccCCc-----cccCCeEEEECcccc
Confidence 3578899998 7777776654 9999999999 99999999998743211111 12235777 47899
Q ss_pred CCCcccc-eeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc
Q 013204 275 LSSAYMP-IGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF 351 (447)
Q Consensus 275 l~gg~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l 351 (447)
++|++.+ .|++++++++++.+........ + +.+..+.+..+.+++..++.+ +...++..++..++++.|+++
T Consensus 229 lgg~~~~~GG~v~~~~~li~~l~~~~~~~~-~--g~~~g~~~~~~~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~ 301 (409)
T 3jzl_A 229 PGGGLAKTGGYIAGKEALVDLCGYRLTTPG-I--GREAGASLYSLLEMYQGFFLA--PHVTAQAIKGARFTAAMLAEF 301 (409)
T ss_dssp GGTTTCSSCEEEEECHHHHHHHHHHHSCTT-T--GGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT
T ss_pred CCccCCceEEEEEeCHHHHHHHHHHhcccc-c--cccccccHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHhC
Confidence 9876433 5889999999888864211111 0 011122221123344444432 345677778888888888887
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-13 Score=143.64 Aligned_cols=321 Identities=12% Similarity=0.046 Sum_probs=174.4
Q ss_pred ChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCc-ccc
Q 013204 76 TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLP-ALH 154 (447)
Q Consensus 76 ~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~-~~~ 154 (447)
.....+..+.+++.+.. ...+++++|+++||..++..+. .++++||+..+.|+..... +...|.. .+.
T Consensus 204 ~g~v~~~ee~la~l~G~--d~~i~~~~Gtt~a~~~~i~al~--------~~GD~Vlv~~~~h~s~~~~-~~~~G~~~v~v 272 (755)
T 2vyc_A 204 TGAFGESEKYAARVFGA--DRSWSVVVGTSGSNRTIMQACM--------TDNDVVVVDRNCHKSIEQG-LMLTGAKPVYM 272 (755)
T ss_dssp CHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHHC--------CTTCEEEEESSCCHHHHHH-HHHHCCEEEEE
T ss_pred ccHHHHHHHHHHHHhCC--CceEEECCcHHHHHHHHHHHhc--------CCCCEEEECCCchHHHHHH-HHHcCCEEEEE
Confidence 34556677777777631 2345555555788999998763 3357888887776554433 3333322 111
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCC------CcE-EEEEEccccCCCCCccCChhHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGP------ETI-AAFIAEPVIGAGGVIPPPATYF 227 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~------~~~-a~vi~epv~~~~G~~~~~~~~l 227 (447)
... . +.+.. ......+. .++++|++.+..... ..+ .+++++| + ..|.+.+ +
T Consensus 273 ~~~-~-----------~~~g~-~g~i~~~~---~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n-~~G~v~d----l 330 (755)
T 2vyc_A 273 VPS-R-----------NRYGI-IGPIYPQE---MQPETLQKKISESPLTKDKAGQKPSYCVVTNC-T-YDGVCYN----A 330 (755)
T ss_dssp CCC-B-----------CTTSC-BCCCCGGG---GSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-C-TTSEEEC----H
T ss_pred eCC-C-----------Ccccc-ccccCcCC---CCHHHHHHHHHhCccccccccCCCeEEEEECC-C-CCceecC----H
Confidence 100 0 00000 00000000 013778888764211 112 3555555 4 3566665 9
Q ss_pred HHHHHHHHhcCCEEEEehhhcCCCcccccc--ccccCCCCCCe------e--eecccCCCcccceeEEEeChh---H-HH
Q 013204 228 EKVQAVVKKYDILFIADEVICAFGRLGTMF--GCDKYSIKPDL------V--SFAKALSSAYMPIGAILVSPE---V-SE 293 (447)
Q Consensus 228 ~~l~~l~~~~g~~li~DEv~~g~g~~g~~~--~~~~~~~~~d~------v--~~sK~l~gg~~~~g~~~~~~~---~-~~ 293 (447)
++|.++|++||+++++||+|.+.-..+..+ .....+...|+ + +++|.++|. ...|+++.+++ + ..
T Consensus 331 ~~I~~ia~~~~~~livDeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~-~~g~~i~~~~~~~~i~~~ 409 (755)
T 2vyc_A 331 KEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNAL-SQASYIHVREGRGAINFS 409 (755)
T ss_dssp HHHHHHHTTTCSEEEEECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCC-TTCEEEEEECCBTCCCHH
T ss_pred HHHHHHHHHcCCEEEEECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECccccccCc-CCeeeeeecCcccccCHH
Confidence 999999999999999999997431122111 01112200233 3 467998763 23566666543 2 12
Q ss_pred HhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHhHhhccC---------CCcee--e
Q 013204 294 VIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQDGVKAFSD---------SPIIG--E 359 (447)
Q Consensus 294 ~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~---------~~~~~--~ 359 (447)
.+.. .+....+.+++...+++..++++.+.. +++.++..++.+++++.|+++.+ ..+.. .
T Consensus 410 ~~~~------~~~~~~s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~ 483 (755)
T 2vyc_A 410 RFNQ------AYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEV 483 (755)
T ss_dssp HHHH------HHHHTSCSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSE
T ss_pred HHHH------HHHHhCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchh
Confidence 2221 111122445667777776777776654 34678888888999998887632 11110 0
Q ss_pred Eee---------------------------------------ee------eEEEEEeecCCCCCCCCCCCcchHHHHHHH
Q 013204 360 IRG---------------------------------------TG------LILGTEFADNKSPNEPFPPEWGIGAYFGAQ 394 (447)
Q Consensus 360 ~~~---------------------------------------~g------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (447)
+.+ .| ..+.+.......+ ..+.....-+..+.+.
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~-G~~~~~g~~~~~l~~~ 562 (755)
T 2vyc_A 484 VTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGED-GELEETGVPAALVTAW 562 (755)
T ss_dssp EECTTTCCEEEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTT-SSBCSSCCCHHHHHHH
T ss_pred ccccccccccccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCC-CCccccCCcHHHHHHH
Confidence 100 01 1222322211100 0000000113467788
Q ss_pred HHHcCceEEeeC-CEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 395 CEKHGMLVRVSG-DNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 395 l~~~Gi~~~~~g-~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
|.++||.+...+ +.+|+.+++..|++++++++++|.+..+...
T Consensus 563 L~~~gI~~e~~~~~~v~~~~~~g~t~~~~~~l~~al~~~~~~~~ 606 (755)
T 2vyc_A 563 LGRHGIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSFKRHYD 606 (755)
T ss_dssp HHTTTCCCSEECSSEEEEECCTTCCTTTTHHHHHHHHHHHHHHH
T ss_pred HHHCCCEEeecCCCeEEEEECCCCCHHHHHHHHHHHHHHHHhhh
Confidence 888999886554 6699999999999999999999998876653
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.59 E-value=4.7e-14 Score=134.83 Aligned_cols=317 Identities=10% Similarity=0.005 Sum_probs=180.9
Q ss_pred CCHHHHHHHHHHHhcCCcc-cccC--cC----CChHHHHHHHHHHHhcCcCCCCeEEE-eCChhhHHHHHHHHHHHHHHh
Q 013204 50 SEPRLVAAATAQLNTLPFY-HSFW--NR----TTKPSLDLAKELLEMFTASKMAKVFF-TNSGSEANDTQVKLVWYYNNA 121 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~-~~~~--~~----~~~~~~~l~~~l~~~~~~~~~~~v~~-~~sGseA~~~Al~~~~~~~~~ 121 (447)
-+|+|+++|.+.+.+.... .+.. .. ..+...+..+.+++++...+..+|+| ++|||++++.+++.+.
T Consensus 16 ~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~~----- 90 (361)
T 3m5u_A 16 LPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLA----- 90 (361)
T ss_dssp CCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC-----
T ss_pred CcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhcC-----
Confidence 5899999999987542111 0000 00 12344556677777774323458888 9999999999998653
Q ss_pred cCCCCcceEEEEcCCCccchhhhhc-ccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhh
Q 013204 122 LGRPNKKKFIARQKSYHGSTLIAAS-LSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE 200 (447)
Q Consensus 122 ~~~~~~~~vi~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~ 200 (447)
++ ++++.+..+.+++...... ..|.. +..++++....+. .. .++ + +.
T Consensus 91 ---~~-~~~~~i~~~~~~~~~~~~a~~~G~~------------v~~~~~~~~g~~~---~~--------~~~-~--l~-- 138 (361)
T 3m5u_A 91 ---LN-GVCEYANTGVWTKKAIKEAQILGVN------------VKTVASSEESNFD---HI--------PRV-E--FS-- 138 (361)
T ss_dssp ---CS-SCEEEEECSHHHHHHHHHHHHTTCC------------EEEEEECTTTTSC---SC--------CCC-C--CC--
T ss_pred ---CC-CeEEEEeCCHHHHHHHHHHHHcCCc------------eEEEecccCcCCC---cC--------Chh-h--cC--
Confidence 22 3333222333344211111 11111 1112211110000 00 011 1 21
Q ss_pred CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec--ccCCCc
Q 013204 201 GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSA 278 (447)
Q Consensus 201 ~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l~gg 278 (447)
+ ++++|.+..+.+..|.+.+. +++ +|+++++|-+|+ +|.. ++..+ ..|++++| |.+ |+
T Consensus 139 -~-~t~lv~~~~~e~~tG~~~~~---------i~~-~~~~~~vD~~q~-~g~~--~id~~----~~d~~~~s~~K~~-gp 198 (361)
T 3m5u_A 139 -D-NADYAYICSNNTIYGTQYQN---------YPK-TKTPLIVDASSD-FFSR--KVDFS----NIALFYGGVQKNA-GI 198 (361)
T ss_dssp -T-TSSEEEEESEETTTTEECSS---------CCC-CSSCEEEECGGG-TTSS--CCCCT----TEEEEEEETTTTS-SC
T ss_pred -C-CCCEEEEeCCCCCcceeCCc---------ccc-cCCEEEEEcccc-cCCC--CCCcc----cCCEEEEechhcc-CC
Confidence 2 34556665555556776552 344 499999999998 5433 22222 24788776 888 45
Q ss_pred ccceeEEEeChhHHHHhhhccCCCCcc------CcCCC-CCCcHHHHHHHHHHHHHHhhh-c---HHHHHHHHHHHHHHh
Q 013204 279 YMPIGAILVSPEVSEVIHSQSNTLGSF------SHGFT-YSGHPVSCAVAIEALKIYKER-N---IVEQVNKIAPKFQDG 347 (447)
Q Consensus 279 ~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~t-~~~~~~~~~aa~a~l~~~~~~-~---~~~~~~~~~~~l~~~ 347 (447)
.++|+++.++++.+.+.... .+..+ ....+ .+++..++.+..++++.+.+. + ..++.+++.+++++.
T Consensus 199 -~G~g~l~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~ 276 (361)
T 3m5u_A 199 -SGLSCIFIRKDMLERSKNKQ-IPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYEC 276 (361)
T ss_dssp -TTCEEEEEEHHHHHHHHTCC-CCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred -CccEEEEEcHHHHhhhcCCC-CCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 68999999999887765310 00000 01122 345666777777888887654 3 456777788888888
Q ss_pred HhhccCC-CceeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC---CEEEEecCCCCCHHHH
Q 013204 348 VKAFSDS-PIIGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG---DNIMMSPPFIMSPEEV 422 (447)
Q Consensus 348 L~~l~~~-~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g---~~iR~~~~~~~t~e~i 422 (447)
|+++.+. ...... .....++.+.+++... ....+...|.++||.+..+. +.+|+++...+|++||
T Consensus 277 L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~----------~~~~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~edI 346 (361)
T 3m5u_A 277 IDLSNGFYKGHADKKDRSLMNVSFNIAKNKD----------LEPLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQV 346 (361)
T ss_dssp HHTSTTSEEESSCGGGBCSSEEEEEESSCTT----------HHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHH
T ss_pred HHHCCCeeeccCCHHHcCCeEEEEECCCchh----------hhHHHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHHH
Confidence 8776321 111111 1112345566553110 12357788889999987552 4599999999999999
Q ss_pred HHHHHHHHHHHHH
Q 013204 423 DELISKYGKALKA 435 (447)
Q Consensus 423 ~~~~~~l~~~l~~ 435 (447)
+++++.|++..++
T Consensus 347 d~l~~al~~~~~~ 359 (361)
T 3m5u_A 347 KTLCEFMKEFQGK 359 (361)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988765
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.2e-14 Score=140.03 Aligned_cols=324 Identities=13% Similarity=0.007 Sum_probs=178.8
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhc-CCcc--cccCc-CCChHHHHHHHHHHHhcC-----cCCCCeEEEeC
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNT-LPFY--HSFWN-RTTKPSLDLAKELLEMFT-----ASKMAKVFFTN 102 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~~~--~~~~~-~~~~~~~~l~~~l~~~~~-----~~~~~~v~~~~ 102 (447)
.+..+||..+.. .++ .++.+.+++.+.+.. .... +.... + .....+|.+.+++++. ..+.+++++++
T Consensus 55 ~~~~i~l~~g~~--~~~-~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G-~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~ 130 (427)
T 2hox_A 55 QGCSADVASGDG--LFL-EEYWKQHKEASAVLVSPWHRMSYFFNPVS-NFISFELEKTIKELHEVVGNAAAKDRYIVFGV 130 (427)
T ss_dssp TTCCEECCSCCC--GGG-HHHHTTSHHHHCEEECTTTTCSSSCSSCC-TTCCHHHHHHHHHHHHHHTCBCCTTCEEEEES
T ss_pred CCceEEecCcCC--CCC-CCHHHHHhHHhhhhcCCcccccCCCCCCC-ccchHHHHHHHHHHHHHhCCcCCCCCEEEEeC
Confidence 445677765532 232 345666777766632 1111 21111 1 0113455556655542 13567999999
Q ss_pred ChhhHHHHHHHHHHHHHHhcC-CCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCC
Q 013204 103 SGSEANDTQVKLVWYYNNALG-RPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGET 181 (447)
Q Consensus 103 sGseA~~~Al~~~~~~~~~~~-~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (447)
|+++|+..+++.+.... ..+ -..++.|++.+|.|.++.......+.... . ..++
T Consensus 131 G~~~al~~~~~~l~~~~-~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~-~----------~~~d------------- 185 (427)
T 2hox_A 131 GVTQLIHGLVISLSPNM-TATPDAPESKVVAHAPFYPVFREQTKYFDKKGY-V----------WAGN------------- 185 (427)
T ss_dssp HHHHHHHHHHHHHSCCT-TTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTE-E----------EEEE-------------
T ss_pred CHHHHHHHHHHHHhhcc-ccccCCCCCEEEEeCCCcccHHHHHHHcCCeee-e----------ecCC-------------
Confidence 99999999998761000 000 03457899999999877554443322211 0 0011
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccccccc
Q 013204 182 EEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDK 261 (447)
Q Consensus 182 ~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~ 261 (447)
+++|++.+. ++...++++.|.|++| .+.+ +.+ + ++..|.||.+-+ . ......
T Consensus 186 --------~~~l~~~~~---~~~k~v~l~~p~NPtG-~~~~--~~l-------~--~~~~i~d~~~~~----~-~~s~~~ 237 (427)
T 2hox_A 186 --------AANYVNVSN---PEQYIEMVTSPNNPEG-LLRH--AVI-------K--GCKSIYDMVYYW----P-HYTPIK 237 (427)
T ss_dssp --------GGGGTTCSC---GGGEEEEEESSCTTTC-CCCC--CSS-------T--TCEEEEECTTCS----T-TTSCCC
T ss_pred --------HHHHHHhhc---CCceEEEEcCCCCCcc-cccH--HHH-------c--CCCEEEeecccC----C-CCCccc
Confidence 144444332 2233445555655554 4443 322 2 456778877632 1 111111
Q ss_pred CCCCCCee--eecccCCCcccceeEEEe-ChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh--------
Q 013204 262 YSIKPDLV--SFAKALSSAYMPIGAILV-SPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE-------- 330 (447)
Q Consensus 262 ~~~~~d~v--~~sK~l~gg~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-------- 330 (447)
.....+++ +|||.++..++++|++++ ++++++.+... ....+++.+.+++.++.++|+...+
T Consensus 238 ~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~l~~~l~~~-------~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~ 310 (427)
T 2hox_A 238 YKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNY-------MTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGT 310 (427)
T ss_dssp SCBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHH-------HHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cCCCceEEEEeChhcCCCCCceEEEEEECCHHHHHHHHHH-------HHhcCCCCCHHHHHHHHHHhhcchhhhccccch
Confidence 11123444 578988754489999999 58888887632 1222445677777777777764211
Q ss_pred -hc----HHHHHHHHHHHHHHhHhhccCCCc-----ee------e-EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHH
Q 013204 331 -RN----IVEQVNKIAPKFQDGVKAFSDSPI-----IG------E-IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGA 393 (447)
Q Consensus 331 -~~----~~~~~~~~~~~l~~~L~~l~~~~~-----~~------~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 393 (447)
++ ..+.++++.+++.+.|+++.+..+ .. . ...-|.++.+.+..+. ..+.+
T Consensus 311 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~~-------------~~~~~ 377 (427)
T 2hox_A 311 MRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEE-------------DKDCY 377 (427)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGG-------------GCSHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCCcH-------------HHHHH
Confidence 12 345666666777777765422111 00 1 1222566677775311 12455
Q ss_pred HHH-HcCceEEee------CCEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 394 QCE-KHGMLVRVS------GDNIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 394 ~l~-~~Gi~~~~~------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
.++ ++||.+.++ .+.+|++. ..++++|++++++|.++++
T Consensus 378 ~ll~~~gI~v~pg~~f~~~~~~~Ris~--~~~~e~l~~~l~~l~~~~~ 423 (427)
T 2hox_A 378 QTFQNGRINTQNGVGFEASSRYVRLSL--IKTQDDFDQLMYYLKDMVK 423 (427)
T ss_dssp HHHHHTTEECEEGGGGTSCTTEEEEEC--SSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCEEEcCCCccCCCCCEEEEEe--cCCHHHHHHHHHHHHHHHh
Confidence 554 789999875 25799994 5699999999999988874
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-13 Score=134.91 Aligned_cols=291 Identities=11% Similarity=0.084 Sum_probs=158.5
Q ss_pred ChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhh---cccCCcc
Q 013204 76 TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAA---SLSGLPA 152 (447)
Q Consensus 76 ~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~---~~~~~~~ 152 (447)
.+...++.+++++++. .+.+++++++|++.+++.++..++ . .++++||+.++.|+....... ...|...
T Consensus 107 ~~~~~~~~~~la~~~g-~~~~~i~~~~g~taa~ea~~~a~~-~------~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v 178 (438)
T 1wyu_A 107 LQATFEYQTMIAELAG-LEIANASMYDGATALAEGVLLALR-E------TGRMGVLVSQGVHPEYRAVLRAYLEAVGAKL 178 (438)
T ss_dssp HHHHHHHHHHHHHHHT-SSEECSCBSSHHHHHHHHHHHHHH-H------HTCCEEEEETTSCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHhC-CCccceEEeCcHHHHHHHHHHHHh-c------CCCCEEEEcCccCHhHHHHHHHHHHHCCCEE
Confidence 3456788888888873 344456788988855555544332 1 124678887766654432211 1122111
Q ss_pred ccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHH
Q 013204 153 LHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQA 232 (447)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~ 232 (447)
..++. +.+..+ +++ + . +++++|+++.. +..|.+.+ +++|.+
T Consensus 179 ------------~~v~~-~~~~~d----------------~~~-i---~-~~t~~v~i~~p-n~tG~~~~----l~~i~~ 219 (438)
T 1wyu_A 179 ------------LTLPL-EGGRTP----------------LPE-V---G-EEVGAVVVQNP-NFLGALED----LGPFAE 219 (438)
T ss_dssp ------------EEECC-BTTBCC----------------CCC-C---C-TTEEEEEEESS-CTTSBCCC----HHHHHH
T ss_pred ------------EEEcC-cCCccC----------------HHH-h---C-CCeEEEEEECC-CCCeEEec----HHHHHH
Confidence 11121 111100 111 1 1 24666666665 66677765 999999
Q ss_pred HHHhcCCEEEEehh-hcCCCccccccccccCCCCCCeeeec-ccCC----CcccceeEEEeChhHHHHhhhcc-----CC
Q 013204 233 VVKKYDILFIADEV-ICAFGRLGTMFGCDKYSIKPDLVSFA-KALS----SAYMPIGAILVSPEVSEVIHSQS-----NT 301 (447)
Q Consensus 233 l~~~~g~~li~DEv-~~g~g~~g~~~~~~~~~~~~d~v~~s-K~l~----gg~~~~g~~~~~~~~~~~~~~~~-----~~ 301 (447)
+|++||+++|+|-- ++ +|..... .. ..+|++++| |.++ .+++++|++++++++++.+.... ..
T Consensus 220 la~~~g~~vivd~d~~a-~g~~~~~---~~--~g~D~~~~s~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~ 293 (438)
T 1wyu_A 220 AAHGAGALFVAVADPLS-LGVLKPP---GA--YGADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDV 293 (438)
T ss_dssp HHHHTTCEEEEECCTTG-GGTBCCH---HH--HTCSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBT
T ss_pred HHHHcCCEEEEEechhh-ccCcCCC---cc--CCCCEEEECCcccCCCccCCCCCeeEEEEcHHHHHhCCCceecccccc
Confidence 99999999995522 22 3222111 11 237888774 6533 22258899999998776652100 00
Q ss_pred CC--cc------------CcCCCCCC---cHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHhHhhccCCCceeeEe
Q 013204 302 LG--SF------------SHGFTYSG---HPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIR 361 (447)
Q Consensus 302 ~~--~~------------~~~~t~~~---~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~ 361 (447)
.+ .+ ....+... +.+...++...+..+.. ++..++..++.+++.+.|+++.+..+...
T Consensus 294 ~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-- 371 (438)
T 1wyu_A 294 EGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTP-- 371 (438)
T ss_dssp TSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSC--
T ss_pred CCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCC--
Confidence 00 00 00112221 22322222222443332 33556677778888888877633222111
Q ss_pred eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceE--Eee----CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 362 GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLV--RVS----GDNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 362 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~--~~~----g~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
...+..+.+.... ....+.++|.++||.+ .++ .+.+|+++...+|++++++++++|++++
T Consensus 372 -~~~~~~~~~~~~~-----------~~~~~~~~L~~~gi~v~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 372 -KPFFNEFALALPK-----------DPEAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp -SSBCSEEEEECSS-----------CHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred -CCeEEEEEEeCCC-----------CHHHHHHHHHHCCceeccccccccCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 1122122222111 1456889999999998 433 3679999988899999999999998764
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-12 Score=127.63 Aligned_cols=290 Identities=12% Similarity=0.052 Sum_probs=162.0
Q ss_pred CHHHHHHHHHHH--hcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEE---eCChhhHHHHHHHHHHHHHHhcCCC
Q 013204 51 EPRLVAAATAQL--NTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFF---TNSGSEANDTQVKLVWYYNNALGRP 125 (447)
Q Consensus 51 ~p~v~~a~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~---~~sGseA~~~Al~~~~~~~~~~~~~ 125 (447)
.++|++++.+.. +.................++++.+++++ +.+..++ ++||++|+..++.... .
T Consensus 45 ~~~Vl~A~~~~~~~~~~~~~~~gy~y~~~~~~~Le~~lA~l~---g~e~alv~p~~~sGt~Ai~~al~all--------~ 113 (427)
T 3i16_A 45 QLKVLNAFQEERISEAHFTNSSGYGYGDIGRDSLDAVYARVF---NTESALVRPHFVNGTHALGAALFGNL--------R 113 (427)
T ss_dssp HHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHH---TCSEEEEETTCCSHHHHHHHHHHHHC--------C
T ss_pred HHHHHHHHHHhchhHHhcCCCCCCCCCHHHHHHHHHHHHHHh---CCcceEEeCCCccHHHHHHHHHHHHh--------C
Confidence 367777777643 1111111112234445778889999987 3345566 8999999999988653 3
Q ss_pred CcceEEEEc-CCCccchhhh-hcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCC
Q 013204 126 NKKKFIARQ-KSYHGSTLIA-ASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPE 203 (447)
Q Consensus 126 ~~~~vi~~~-~~yhg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~ 203 (447)
+++.||+.+ +.|++..... ...+.........+ ..+..++....+. .+++++++.+.. ..
T Consensus 114 pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G---~~~~~v~~~~~g~-------------~D~e~l~~~l~~--~~ 175 (427)
T 3i16_A 114 PGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFG---INYKQVDLKEDGK-------------PNLEEIEKVLKE--DE 175 (427)
T ss_dssp TTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGT---CEEEECCCCTTSS-------------CCHHHHHHHHHT--CT
T ss_pred CCCEEEEeCCCccHHHHHHHhccccchHHHHHHcC---CEEEEecCccCCC-------------cCHHHHHHHhhC--CC
Confidence 357888887 7777654221 10000000000011 1112222211100 114778877763 13
Q ss_pred cEEEEEEcc----ccCCCCCccCChhHHHHHHHHHHh--cCCEEEEehhhcCCCccccccccccCCCCCCee--eecccC
Q 013204 204 TIAAFIAEP----VIGAGGVIPPPATYFEKVQAVVKK--YDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKAL 275 (447)
Q Consensus 204 ~~a~vi~ep----v~~~~G~~~~~~~~l~~l~~l~~~--~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l 275 (447)
++++|++++ +++..|.+.+ +++|+++|++ ||+++|+||+|..+.....+. ....|++ +++|.+
T Consensus 176 ~tklV~i~~s~~~p~nptg~i~d----l~~i~~la~~~~~g~~livD~a~~~~~~~~~p~-----~~gaDiv~~S~sK~l 246 (427)
T 3i16_A 176 SITLVHIQRSTGYGWRRALLIED----IKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPT-----DVGADLIAGSLIKNI 246 (427)
T ss_dssp TEEEEEEECSCCSSSSCCCCHHH----HHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGG-----GGTCSEEEEETTSGG
T ss_pred CCEEEEEEcCCCCCCCCcccHHH----HHHHHHHHHHhCCCCEEEEECCCccccccCCcc-----ccCCeEEEecCcccC
Confidence 578888988 6777776644 9999999999 999999999997442121111 1235766 468999
Q ss_pred CCcc-cceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHH-HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccC
Q 013204 276 SSAY-MPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVS-CAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD 353 (447)
Q Consensus 276 ~gg~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~-~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~ 353 (447)
+|++ ...|++++++++++.+........ .+....+. +. +..++..++.+ +...++..++..++.+.|+++..
T Consensus 247 gg~g~~~gG~i~~~~~li~~l~~~~~~~~---~g~~~~~~-~~~a~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~g~ 320 (427)
T 3i16_A 247 GGGIAPTGGYLAGTKDCIEKTSYRLTVPG---IGGECGST-FGVVRSMYQGLFLA--PHISMEALKGAILCSRIMELAGF 320 (427)
T ss_dssp GTTTCCSCEEEEECHHHHHHHHHHHSCTT---TGGGCCCC-TTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCceEEEEEECHHHHHHHHHhcccCc---cCccCCcc-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhCCC
Confidence 8754 346889999999988864211100 00111110 11 22233333322 34567777888888888887621
Q ss_pred CCceeeEeeee-----eEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcC
Q 013204 354 SPIIGEIRGTG-----LILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHG 399 (447)
Q Consensus 354 ~~~~~~~~~~g-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 399 (447)
.+ .++.+ .++.+.+.+.. ....|++.|....
T Consensus 321 -~V---~p~~~~~~~~~i~~i~l~~~~-----------~~~~f~~~l~~~~ 356 (427)
T 3i16_A 321 -EV---MPKYDEKRSDIIQSIKFNDKD-----------KLIEFCKGIQTGS 356 (427)
T ss_dssp -EE---ESCTTSCCSSSCEEEECSSHH-----------HHHHHHHHHHHTC
T ss_pred -ee---cCCCCCCCccEEEEEEECCHH-----------HHHHHHHHHhhcC
Confidence 11 11122 25566664321 3456777887753
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-12 Score=127.20 Aligned_cols=258 Identities=11% Similarity=0.030 Sum_probs=147.9
Q ss_pred CCHHHHHHHHHHHhcCC--cccccCcCCChHHHHHHHHHHHhcCcCCCCeEEE---eCChhhHHHHHHHHHHHHHHhcCC
Q 013204 50 SEPRLVAAATAQLNTLP--FYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFF---TNSGSEANDTQVKLVWYYNNALGR 124 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~---~~sGseA~~~Al~~~~~~~~~~~~ 124 (447)
++++|++++.+...... ..............++++.+++++ +.+..++ ++||++|+..++....
T Consensus 45 n~~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~---g~e~alv~p~~~sGt~A~~~al~all-------- 113 (427)
T 3hvy_A 45 NQLKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIF---NTESAFVRPHFVNGTHAIGAALFGNL-------- 113 (427)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHH---TCSEEEEETTCCSHHHHHHHHHHHTC--------
T ss_pred hHHHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHh---CCCceEEeCCCCcHHHHHHHHHHHhc--------
Confidence 44777777776532100 011111223445778889999887 4455666 8999999999988653
Q ss_pred CCcceEEEEc-CCCccchhhh-hcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCC
Q 013204 125 PNKKKFIARQ-KSYHGSTLIA-ASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGP 202 (447)
Q Consensus 125 ~~~~~vi~~~-~~yhg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~ 202 (447)
.+++.||+.+ +.|++..... .............+ ..+..++. +.+. .+++++++.+...
T Consensus 114 ~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G---~~~~~v~~-~~~~-------------~d~e~l~~~i~~~-- 174 (427)
T 3hvy_A 114 RPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYG---VKYKMVDL-KDGK-------------VDINTVKEELKKD-- 174 (427)
T ss_dssp CTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGT---CEEEECCC-BTTB-------------CCHHHHHHHHHHC--
T ss_pred CCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcC---CEEEEecC-CCCC-------------cCHHHHHHHhhCC--
Confidence 3457888888 8887764211 00000000000001 11122222 1100 1137788877631
Q ss_pred CcEEEEEEcc----ccCCCCCccCChhHHHHHHHHHHh--cCCEEEEehhhcCCCccccccccccCCCCCCee--eeccc
Q 013204 203 ETIAAFIAEP----VIGAGGVIPPPATYFEKVQAVVKK--YDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKA 274 (447)
Q Consensus 203 ~~~a~vi~ep----v~~~~G~~~~~~~~l~~l~~l~~~--~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~ 274 (447)
.++++|++++ +++..|.+.+ +++|+++|++ ||+++++||+|..+.....+. ....|++ +++|.
T Consensus 175 ~~tklV~i~~s~gyp~nptg~v~d----l~~i~~ia~~~~~g~~livD~a~~~~~~~~~p~-----~~gaDiv~~S~sK~ 245 (427)
T 3hvy_A 175 DSIKLIHIQRSTGYGWRKSLRIAE----IAEIIKSIREVNENVIVFVDNCYGEFVEEKEPT-----DVGADIIAGSLIKN 245 (427)
T ss_dssp TTEEEEEEESSCCSSSSCCCCHHH----HHHHHHHHHHHCSSSEEEEECTTCTTTSSSCGG-----GGTCSEEEEETTSG
T ss_pred CCCEEEEEECCCCCCCCccccHHH----HHHHHHHHHHhCCCCEEEEECCccccccCCCCc-----ccCCeEEEECCccc
Confidence 3578889988 6666665544 9999999999 899999999997442121111 1235776 57899
Q ss_pred CCCcc-cceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc
Q 013204 275 LSSAY-MPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF 351 (447)
Q Consensus 275 l~gg~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l 351 (447)
++|++ ...|++++++++++.+.......+ .+.+.++.+..+..++..++.. +...++..++..++++.|+++
T Consensus 246 lgg~g~~~GG~i~~~~~li~~l~~~~~~~~---~g~~~~~~~~~a~~~~~gl~~~--~~r~~~~~~~a~~la~~L~~~ 318 (427)
T 3hvy_A 246 IGGGIATTGGYIAGKEEYVTQATFRVTVPG---IGGECGSTFGVMRSLYEGLFMA--PHVTIEAVKGAVFCARIMELA 318 (427)
T ss_dssp GGTTTCCSCEEEEECHHHHHHHHHHHSCTT---TGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccceEEEEEECHHHHHHHHHHhhcCC---cccccCCCHHHHHHHHHhHhHH--HHHHHHHHHHHHHHHHHHHhC
Confidence 98754 345788899999988864211111 0111111111133333444432 345677778888888888876
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.9e-12 Score=130.88 Aligned_cols=316 Identities=14% Similarity=0.129 Sum_probs=177.2
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCCh-hhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCC-cc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSG-SEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGL-PA 152 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sG-seA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~-~~ 152 (447)
+.....++++++++++ +.++++|.++| +.||..++..+. .+++.||+..++| .+...++..+|. +.
T Consensus 193 ~~g~i~eaE~~lA~~f---Ga~~a~~v~nGts~An~~ai~al~--------~pGD~VLv~r~~H-~S~~~~l~lsGa~pv 260 (715)
T 3n75_A 193 HSGPHKEAEQYIARVF---NADRSYMVTNGTSTANKIVGMYSA--------PAGSTILIDRNCH-KSLTHLMMMSDVTPI 260 (715)
T ss_dssp TBTHHHHHHHHHHHHH---TCSEEEEESSHHHHHHHHHHHHHC--------CTTCEEEEESSCC-HHHHHHHHHSCCEEE
T ss_pred CcHHHHHHHHHHHHHh---CCCCceEECcHHHHHHHHHHHHhC--------CCCCEEEECCCcc-HHHHHHHHHcCCEEE
Confidence 4445678888999987 45677777777 599988888763 3346777765554 554444444443 32
Q ss_pred ccCCCCCCCCcceecCCCCcccCCCCC-CChhHHHHHHHHHHHHHHHhhCC-Cc-EEEEEEccccCCCCCccCChhHHHH
Q 013204 153 LHQKFDLPAPFVLHTDCPHYWRYAHPG-ETEEEYSTRLANNLEDLILKEGP-ET-IAAFIAEPVIGAGGVIPPPATYFEK 229 (447)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~le~~l~~~~~-~~-~a~vi~epv~~~~G~~~~~~~~l~~ 229 (447)
+..... . .+..+. .+.+. .+.++|++.+..... +. .++|+++| +..|.+.+ +++
T Consensus 261 ~v~~~~-~-------------~~gi~~~i~~~~---~d~e~Le~~l~~~~~~k~p~~vivt~p--n~~G~v~d----l~~ 317 (715)
T 3n75_A 261 YFRPTR-N-------------AYGILGGIPQSE---FQHATIAKRVKETPNATWPVHAVITNS--TYDGLLYN----TDF 317 (715)
T ss_dssp EECCCB-C-------------TTCCBCCCCGGG---GSHHHHHHHHHHSTTCCSCSEEEEESS--CTTSEEEC----HHH
T ss_pred EEeccc-c-------------ccccccCccccc---CCHHHHHHHHhhCcCccCceEEEEECC--CCCCccCC----HHH
Confidence 221100 0 000000 00000 013788888875321 11 14666677 55677766 899
Q ss_pred HHHHHHhcCCEEEEehhhcCCCccccccc-ccc--CCCCCCee-----eecccCCCcccceeEEEeChhH-HHHhhhccC
Q 013204 230 VQAVVKKYDILFIADEVICAFGRLGTMFG-CDK--YSIKPDLV-----SFAKALSSAYMPIGAILVSPEV-SEVIHSQSN 300 (447)
Q Consensus 230 l~~l~~~~g~~li~DEv~~g~g~~g~~~~-~~~--~~~~~d~v-----~~sK~l~gg~~~~g~~~~~~~~-~~~~~~~~~ 300 (447)
|.++|++++ +++||+|.+....+..+. ... .+..+|++ +++|+++|- -..|++.++.++ .+.+..
T Consensus 318 I~ela~~~~--livDEAH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~gl-tqgs~i~v~~~i~~~~~~~--- 391 (715)
T 3n75_A 318 IKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAF-SQASMIHVKGDVNEETFNE--- 391 (715)
T ss_dssp HHHHCCCSE--EEEECTTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCC-TTCEEEEEESCCCHHHHHH---
T ss_pred HHHHhCcCc--EEEccccccccccCCccccccccccCcCCCEEEEEEecccccccCC-CCeeEEEeCchhhHHHHHH---
Confidence 999998774 799999974311222111 111 12235754 467998862 134677665543 222321
Q ss_pred CCCccCcCCCCCCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHhHhhccC------CCcee--eEee-------
Q 013204 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQDGVKAFSD------SPIIG--EIRG------- 362 (447)
Q Consensus 301 ~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~------~~~~~--~~~~------- 362 (447)
.+....|.+++++.+++..++++.++. +++.+++.++.+++++.|+++.. ..+.. .+..
T Consensus 392 ---~~~~~~STSpsy~~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (715)
T 3n75_A 392 ---AYMMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLR 468 (715)
T ss_dssp ---HHHHTSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECC
T ss_pred ---HHHhhcCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccC
Confidence 112234667788888888888887753 45778899999999999987731 00000 0000
Q ss_pred ------------eee-E-----EEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEEEecCCCCCHHHHH
Q 013204 363 ------------TGL-I-----LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIMMSPPFIMSPEEVD 423 (447)
Q Consensus 363 ------------~g~-~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR~~~~~~~t~e~i~ 423 (447)
.+. + +.+....-.. ...+.....-+..+.+.|.++||.+--.+ ..+-+..+...|+++++
T Consensus 469 ~~~~w~gf~~~~~~~~~~Dp~Kl~i~~~~~~~-~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d~~~vl~l~s~g~~~~~~~ 547 (715)
T 3n75_A 469 SDSTWHGFKNIDNEHMYLDPIKVTLLTPGMEK-DGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKAL 547 (715)
T ss_dssp TTCCTTCCTTCCSSSEEECTTEEEEECSCBCT-TSCBCSSCCCHHHHHHHHHHTTCCCSEEETTEEEEECCTTCCHHHHH
T ss_pred cccccccccccccCcccCCCeEEEEEcCCCCC-CCccccCCCcHHHHHHHHHHCCCEEEecCCCcEEEEeCCCCCHHHHH
Confidence 000 0 1111111000 00000001113457778888999887554 56777777889999999
Q ss_pred HHHHHHHHHHHH
Q 013204 424 ELISKYGKALKA 435 (447)
Q Consensus 424 ~~~~~l~~~l~~ 435 (447)
+++++|.+.-+.
T Consensus 548 ~L~~aL~~~~~~ 559 (715)
T 3n75_A 548 SLLRALTDFKRA 559 (715)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998876543
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-11 Score=117.74 Aligned_cols=295 Identities=15% Similarity=0.127 Sum_probs=170.6
Q ss_pred CCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCC-ccccCCCCCCCCcceecCCCCcc
Q 013204 95 MAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGL-PALHQKFDLPAPFVLHTDCPHYW 173 (447)
Q Consensus 95 ~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
....++.+++|-++.+++..+.... +++.+.||+ ....|-+.+.++.+.|. |.+..+.... ....+
T Consensus 134 ~~~~flVnGsTgg~lamilaa~r~~----rpg~d~VIv-pRn~HKSv~kAliL~Gl~Pv~V~p~~d~--~~~~i------ 200 (501)
T 3hl2_A 134 VANCFVVPMATGMSLTLCFLTLRHK----RPKAKYIIW-PRIDQKSCFKSMITAGFEPVVIENVLEG--DELRT------ 200 (501)
T ss_dssp CCEEEEESSCHHHHHHHHHHHHHHH----CTTCCEEEE-ECCCCHHHHHHHHHTTCEEEEECEEEET--TEEEE------
T ss_pred CCcEEEECcHHHHHHHHHHHHcCcc----cCCCCEEEE-ecchHHHHHHHHHHcCCeEEEEeeeecc--cccCC------
Confidence 3456666666656666666554321 123355665 77899998888887775 3332211000 00111
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcc
Q 013204 174 RYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRL 253 (447)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~ 253 (447)
+++.+++++.+.+++.+++|+..+.+..++...+ +++|+++|++||+++++||+|.+.-..
T Consensus 201 ---------------d~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~dd----I~eIaeIch~~gIpllVDeAhGah~~~ 261 (501)
T 3hl2_A 201 ---------------DLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDR----LEELAVICANYDIPHIVNNAYGVQSSK 261 (501)
T ss_dssp ---------------CHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTCTTCHH
T ss_pred ---------------CHHHHHHHHHhcCCCcEEEEEecCCCCCCccccc----HHHHHHHHHHcCCeEEEeCcchhhhhh
Confidence 1488999998776577888888776554333333 999999999999999999998643211
Q ss_pred ccccccccCCC-CCCeeeec--ccCCCccccee--EEEe-ChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHH
Q 013204 254 GTMFGCDKYSI-KPDLVSFA--KALSSAYMPIG--AILV-SPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKI 327 (447)
Q Consensus 254 g~~~~~~~~~~-~~d~v~~s--K~l~gg~~~~g--~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~ 327 (447)
...+..+.+.. ..|+++.| |.+- .|+| .++. ++++++.+... +. ++.++.|.. ..+.++..
T Consensus 262 ~~~lp~sA~~~GrAD~vVqS~HK~ll---vpIGG~ii~~~d~e~l~~~~~~------yP--Gr~S~Spsl--dl~~tLL~ 328 (501)
T 3hl2_A 262 CMHLIQQGARVGRIDAFVQSLDKNFM---VPVGGAIIAGFNDSFIQEISKM------YP--GRASASPSL--DVLITLLS 328 (501)
T ss_dssp HHHHHHHHHHHSCCCEEEEEHHHHHC---CCSSCEEEEESCHHHHHHHHHT------SC--SCBCSHHHH--HHHHHHHH
T ss_pred hhhhHHHHHhcCCCcEEEecccccce---eecCceEEEeCCHHHHHHHHHh------CC--CCCCCcHHH--HHHHHHHH
Confidence 11111111222 48999888 5332 2332 3333 56677776531 11 233334432 23334443
Q ss_pred Hhh---hcHHHHHHHHHHHHHHhHhhc-cCCC-ceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCce-
Q 013204 328 YKE---RNIVEQVNKIAPKFQDGVKAF-SDSP-IIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGML- 401 (447)
Q Consensus 328 ~~~---~~~~~~~~~~~~~l~~~L~~l-~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~- 401 (447)
+.. .++.++..++.++|++.|+++ ..++ .+...+....-+++.+...... .......+...|..++|-
T Consensus 329 lGr~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~------~~~~~t~~gs~Lf~r~vsG 402 (501)
T 3hl2_A 329 LGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEH------RDKAVTQLGSMLFTRQVSG 402 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCTT------TSCHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEeccccccc------ccccHHHHHHHHHhcCCCc
Confidence 333 445677778889999999887 3232 2222222223334555432111 011244577888877653
Q ss_pred --EEee--------------C--------CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 013204 402 --VRVS--------------G--------DNIMMSPPFIMSPEEVDELISKYGKALKATEERV 440 (447)
Q Consensus 402 --~~~~--------------g--------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~ 440 (447)
+.+. | .++-+.....++++|||.++++|++++.+++++.
T Consensus 403 ~Rvv~~~~~~~i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~~~ 465 (501)
T 3hl2_A 403 ARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKER 465 (501)
T ss_dssp CEEECTTCCEEETTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred ceeecCCCceEECCeeecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 2111 1 4577777788999999999999999999887644
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2e-10 Score=111.49 Aligned_cols=311 Identities=12% Similarity=0.089 Sum_probs=167.9
Q ss_pred HHHHHHHHHHhcCcCCCCeEEEeCChh-hHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcc-ccCC
Q 013204 79 SLDLAKELLEMFTASKMAKVFFTNSGS-EANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPA-LHQK 156 (447)
Q Consensus 79 ~~~l~~~l~~~~~~~~~~~v~~~~sGs-eA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~-~~~~ 156 (447)
...+.+++.+++.-......++++++| .++..++..++.. . .+.+.||+. ..-|-+...++...|... +...
T Consensus 100 e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~----~-~~~~~viv~-r~aHkSv~kAl~l~Gl~p~~v~~ 173 (450)
T 3bc8_A 100 TNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHK----R-PKAKYIIWP-RIDQKSCFKSMVTAGFEPVVIEN 173 (450)
T ss_dssp HHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHH----C-TTCCEEEEE-CCCCHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchh----h-cCCCEEEEE-CCcHHHHHHHHHHcCCeeEEEEe
Confidence 335566666665323334557888887 5556566566542 1 112455555 559999888888777532 2110
Q ss_pred CCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHh
Q 013204 157 FDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKK 236 (447)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~ 236 (447)
. +.++.+ ..+++.|++++.+..++.+++|+..|.+...|.+.+ +++|+++|++
T Consensus 174 ~----------~~~~~~-------------~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~dd----l~~Ia~ia~~ 226 (450)
T 3bc8_A 174 V----------LEGDEL-------------RTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICAN 226 (450)
T ss_dssp E----------EETTEE-------------ECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHH
T ss_pred e----------ecCccC-------------CcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecC----HHHHHHHHHH
Confidence 0 000000 011488999997765457888888887665454544 9999999999
Q ss_pred cCCEEEEehhhcCCCccccccccccCCC-CCCeeeec--ccCCCcccceeEEEe-ChhHHHHhhhccCCCCccCcCCCCC
Q 013204 237 YDILFIADEVICAFGRLGTMFGCDKYSI-KPDLVSFA--KALSSAYMPIGAILV-SPEVSEVIHSQSNTLGSFSHGFTYS 312 (447)
Q Consensus 237 ~g~~li~DEv~~g~g~~g~~~~~~~~~~-~~d~v~~s--K~l~gg~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~ 312 (447)
||++|++||+|.+.-+....+..+.+.. ..|++++| |.+... .+.+++.. +++..+.+... +. + ..+
T Consensus 227 ~gi~l~VD~A~G~~~~~~~~l~~~a~~~~~AD~~v~S~HK~l~a~-~~~~~l~~rd~~~~~~~~~~------~~-g-~~s 297 (450)
T 3bc8_A 227 YDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVP-VGGAIIAGFNEPFIQDISKM------YP-G-RAS 297 (450)
T ss_dssp HTCCEEEECTTTTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHSCC-SSCEEEEESCHHHHHHHHHH------SC-S-CBC
T ss_pred CCCeEEEECCCchhhhhhHhHHHHHhcccCCCEEEECCccCCCch-hccEEEEecCHHHHHHHHHH------hh-c-CCc
Confidence 9999999999865322111111011111 47999887 655543 35566665 55666665421 11 1 111
Q ss_pred CcHHHHHHHHHHHHHHhhhc---HHHHHHHHHHHHHHhHhhcc---CCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcc
Q 013204 313 GHPVSCAVAIEALKIYKERN---IVEQVNKIAPKFQDGVKAFS---DSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWG 386 (447)
Q Consensus 313 ~~~~~~~aa~a~l~~~~~~~---~~~~~~~~~~~l~~~L~~l~---~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~ 386 (447)
.+| ++. .+.++..+..+. +.++..++.+++++.|+++. ...+.. ....+.-..+.+..-... ...
T Consensus 298 ~Sp-sL~-l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~-~~~~~~~~~~~l~~~~~~------~~~ 368 (450)
T 3bc8_A 298 ASP-SLD-VLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQ-TPHNPISLAMTLKTIDGH------HDK 368 (450)
T ss_dssp SHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCC-CTTCSSEEEEECTTTSSS------SSC
T ss_pred ccH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecC-CccCCCcceeeccccccc------ccC
Confidence 233 222 222222222222 23344666788888887774 322221 111110112222210000 000
Q ss_pred hHHHHHHHHHHcCc---eEE-------------e--------e-CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 013204 387 IGAYFGAQCEKHGM---LVR-------------V--------S-GDNIMMSPPFIMSPEEVDELISKYGKALKATEERV 440 (447)
Q Consensus 387 ~~~~~~~~l~~~Gi---~~~-------------~--------~-g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~ 440 (447)
....+.-.+...|+ -+. . . ...+-+..++..+++++++++++|++..++.+++.
T Consensus 369 D~tkl~i~~~~~g~sG~~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~~~~ 447 (450)
T 3bc8_A 369 AVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKEQ 447 (450)
T ss_dssp HHHHHHHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeEEEecCCCCccceeeecccccchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 12234444555442 221 0 0 15677787889999999999999999987776543
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=7.7e-08 Score=92.04 Aligned_cols=212 Identities=14% Similarity=0.101 Sum_probs=124.8
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-CCCccccccccccCCCCCCe
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-AFGRLGTMFGCDKYSIKPDL 268 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-g~g~~g~~~~~~~~~~~~d~ 268 (447)
.+.++++....+| ++||+-.+.-. +..+ +++++++|++.|++|++|-.|. |+--.| .+. +-+. ..|+
T Consensus 192 yd~~~~~A~~~kP---klIi~G~SaY~---r~id---~~~~reIAd~vGA~Lm~DmAHiaGLVA~g-~~p-sP~~-~ADv 259 (490)
T 3ou5_A 192 YNQLALTARLFRP---RLIIAGTSAYA---RLID---YARMREVCDEVKAHLLADMAHISGLVAAK-VIP-SPFK-HADI 259 (490)
T ss_dssp HHHHHHHHHHHCC---SEEEECCSSCC---SCCC---HHHHHHHHHHHTCEEEEECGGGHHHHHTT-SSC-CGGG-TCSE
T ss_pred HHHHHHHHhhcCC---CeEEECCccCc---cccC---HHHHHHHHhhcccEEEechhhhhhhhccc-ccC-Cccc-cceE
Confidence 4788888777665 46666553211 1222 8999999999999999998875 442111 111 1111 2699
Q ss_pred eeec--ccCCCcccceeEEEeCh---------------hHHHHhhhccCCCCccCcCCCCCCcHHHHHHHH-HHHHHHhh
Q 013204 269 VSFA--KALSSAYMPIGAILVSP---------------EVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAI-EALKIYKE 330 (447)
Q Consensus 269 v~~s--K~l~gg~~~~g~~~~~~---------------~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~-a~l~~~~~ 330 (447)
||.+ |.|.| .+-|.+++++ ++.+.+... ...+ ..+++.+-..||. .++.....
T Consensus 260 VTtTTHKTLrG--PrGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~a------VFPg-~qggp~~h~IAAkAVaf~Ea~~ 330 (490)
T 3ou5_A 260 VTTTTHKTLRG--ARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFA------VFPS-LQGGPHNHAIAAVAVALKQACT 330 (490)
T ss_dssp EEEESSSTTCS--CSCEEEEEECSEEEECC--CCEEECCCHHHHHHH------HTTT-TCSSCCHHHHHHHHHHHHHHHS
T ss_pred EeccccccccC--CCceEEEeccccccccccccchhHHHHHHHHHhh------cCcc-ccccchHHHHHHHHHHHHHHHh
Confidence 9876 89988 5778888765 344455431 1112 2222222223333 33443333
Q ss_pred h---cHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee--
Q 013204 331 R---NIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-- 405 (447)
Q Consensus 331 ~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-- 405 (447)
+ +...++.++.+.|.+.|.+. ++.++..-+ ...++.+++..... ......+.|.+.||.+--.
T Consensus 331 p~fk~Ya~qVv~NAkaLA~~L~~~-G~~vvsGgT-dnHlvLvDl~~~g~----------tG~~ae~~Le~agItvNkN~i 398 (490)
T 3ou5_A 331 PMFREYSLQVLKNARAMADALLER-GYSLVSGGT-DNHLVLVDLRPKGL----------DGARAERVLELVSITANKNTC 398 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSC-SSSEEEEECGGGTC----------CHHHHHHHHHHTTEECEEECC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCC-CceEEEEeccccCC----------CHHHHHHHHHHcCcEECCCCC
Confidence 3 34567777778888888765 444332111 12344566654321 1445666777889887521
Q ss_pred --------CCEEEEecC----CCCCHHHHHHHHHHHHHHHH
Q 013204 406 --------GDNIMMSPP----FIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 406 --------g~~iR~~~~----~~~t~e~i~~~~~~l~~~l~ 434 (447)
.+.|||..| ....++|++++.+.|.+++.
T Consensus 399 P~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 399 PGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp TTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 157999977 34688999988888877663
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 447 | ||||
| d2byla1 | 404 | c.67.1.4 (A:36-439) Ornithine aminotransferase {Hu | 7e-92 | |
| d1z7da1 | 404 | c.67.1.4 (A:7-410) Ornithine aminotransferase {Pla | 8e-88 | |
| d1sffa_ | 425 | c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA | 3e-87 | |
| d1vefa1 | 387 | c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine a | 1e-83 | |
| d2gsaa_ | 427 | c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase | 4e-73 | |
| d1s0aa_ | 429 | c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxonona | 5e-73 | |
| d1zoda1 | 431 | c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {P | 2e-66 | |
| d1ohwa_ | 461 | c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA | 1e-56 | |
| d2v1pa1 | 467 | c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop | 3e-29 | |
| d1ax4a_ | 465 | c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas | 6e-26 | |
| d1m6sa_ | 343 | c.67.1.1 (A:) Low-specificity threonine aldolase { | 6e-07 | |
| d1v72a1 | 345 | c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Ps | 8e-07 | |
| d1fc4a_ | 401 | c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {E | 4e-06 | |
| d3bc8a1 | 445 | c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase | 6e-05 | |
| d1svva_ | 340 | c.67.1.1 (A:) Low-specificity threonine aldolase { | 0.002 | |
| d1b5pa_ | 382 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 0.003 |
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 282 bits (721), Expect = 7e-92
Identities = 102/431 (23%), Positives = 177/431 (41%), Gaps = 46/431 (10%)
Query: 8 GWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPF 67
G + P+ +E+ +G Y++DV G+KY D L+ + G P++V A +Q++ L
Sbjct: 16 GAHNAHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTL 75
Query: 68 YHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPN- 126
+ L + + KV N+G EA +T KL + +
Sbjct: 76 TSRAFYNN-----VLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQK 130
Query: 127 -KKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEY 185
K K + ++ G TL A S S P + F P
Sbjct: 131 YKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY---------------- 174
Query: 186 STRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADE 245
N+L L +AAF+ EP+ G GV+ P Y V+ + ++ +LFIADE
Sbjct: 175 -----NDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADE 229
Query: 246 VICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSF 305
+ R G D +++PD+V KALS P+ A+L ++ I
Sbjct: 230 IQTGLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIK-------PG 282
Query: 306 SHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGL 365
H TY G+P+ C VAI AL++ +E N+ E +K+ ++ + ++ +RG GL
Sbjct: 283 EHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPS-DVVTAVRGKGL 341
Query: 366 ILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN-IMMSPPFIMSPEEVDE 424
+ + K + + +G+L + + + I +PP ++ +E+ E
Sbjct: 342 LNAIVIKETKDWD---------AWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRE 392
Query: 425 LISKYGKALKA 435
I K + +
Sbjct: 393 SIEIINKTILS 403
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Score = 271 bits (694), Expect = 8e-88
Identities = 105/432 (24%), Positives = 178/432 (41%), Gaps = 43/432 (9%)
Query: 8 GWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPF 67
G + D P+V+++++G +VYDVN K+Y D L+ G P ++ A Q L
Sbjct: 14 GAHNYDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTI 73
Query: 68 YHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNK 127
+ L + + L + T + + ++ W Y N
Sbjct: 74 CSRAF---FSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENM 130
Query: 128 KKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187
K + + ++ G TL S S F AP
Sbjct: 131 AKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEA------------- 177
Query: 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVI 247
L + + AFI EP+ G GVI P Y + V + KKY++LF+ADEV
Sbjct: 178 --------LEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQ 229
Query: 248 CAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSH 307
GR G + Y++KPD++ KALS + PI A+L + ++ VI H
Sbjct: 230 TGLGRTGKLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIK-------PGEH 282
Query: 308 GFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGV-KAFSDSPIIGEIRGTGLI 366
G TY G+P++ ++ +EAL + + E K+ F + + + DS I+ ++RG GL+
Sbjct: 283 GSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLL 342
Query: 367 LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN-IMMSPPFIMSPEEVDEL 425
EF + + +++G++ R D I ++PP ++ E++DE
Sbjct: 343 CAIEFKNELVNV----------LDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDEC 392
Query: 426 ISKYGKALKATE 437
K +K +
Sbjct: 393 TEIIVKTVKFFD 404
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Score = 270 bits (691), Expect = 3e-87
Identities = 103/430 (23%), Positives = 197/430 (45%), Gaps = 30/430 (6%)
Query: 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWN 73
+HP+ +++E V+DV G++YLD G+ G P++VAA AQL L + F
Sbjct: 21 IHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLS-HTCFQV 79
Query: 74 RTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIAR 133
+P L+L + + + K +GSEA + VK+ + IA
Sbjct: 80 LAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATK------RSGTIAF 133
Query: 134 QKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNL 193
+YHG T +L+G + + H +R +P ++
Sbjct: 134 SGAYHGRTHYTLALTGKVNPYSAG-------MGLMPGHVYRALYPCPLHGISEDDAIASI 186
Query: 194 EDLILKEG-PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252
+ + PE IAA + EPV G GG + ++++A+ ++ I+ IADEV GR
Sbjct: 187 HRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGR 246
Query: 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS 312
GT+F ++ + PDL +FAK+++ + P+ + EV + + G TY+
Sbjct: 247 TGTLFAMEQMGVAPDLTTFAKSIAGGF-PLAGVTGRAEVMDAVA-------PGGLGGTYA 298
Query: 313 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDG-VKAFSDSPIIGEIRGTGLILGTEF 371
G+P++C A+E LK++++ N++++ N + K +DG + P IG++RG G ++ E
Sbjct: 299 GNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIEL 358
Query: 372 ADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN---IMMSPPFIMSPEEVDELISK 428
++ N+ P+ + A A+ G+++ G + + P + ++ + +
Sbjct: 359 FEDGDHNK---PDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEI 415
Query: 429 YGKALKATEE 438
+ ++
Sbjct: 416 ISQCFDEAKQ 425
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} Length = 387 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Score = 260 bits (665), Expect = 1e-83
Identities = 103/420 (24%), Positives = 177/420 (42%), Gaps = 53/420 (12%)
Query: 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNR 74
H L+I + +G+ V+D G +Y+D + G LG P +V A Q TL
Sbjct: 19 HDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTL-- 76
Query: 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 134
P L ++ +VF NSG+EAN+ +K + +KKF+A
Sbjct: 77 -PTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTG------RKKFVAAM 129
Query: 135 KSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLE 194
+ + G T+ + S++ P + F P V + Y N++E
Sbjct: 130 RGFSGRTMGSLSVTWEPKYREPF---LPLVEPVEFIPY------------------NDVE 168
Query: 195 DLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLG 254
L + E AA I EPV G GGV P + + + ++ L I DE+ GR G
Sbjct: 169 ALK-RAVDEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTG 227
Query: 255 TMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGH 314
F + + I PD+++ AKAL A++ + HG T+ G+
Sbjct: 228 KRFAFEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPK--------GGHGTTFGGN 279
Query: 315 PVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADN 374
P++ A + A++ + + E+ ++ P F + ++A SP I E+RG GL++G E +
Sbjct: 280 PLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAI-PSPKIREVRGMGLMVGLELKEK 338
Query: 375 KSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN-IMMSPPFIMSPEEVDELISKYGKAL 433
+P Y ++H +L +G I PP ++ E+++ ++ L
Sbjct: 339 AAP------------YIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVL 386
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Score = 233 bits (596), Expect = 4e-73
Identities = 81/432 (18%), Positives = 165/432 (38%), Gaps = 38/432 (8%)
Query: 9 WQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY 68
++S P+V ++ + +Y +DV+G +Y+D + G + P ++ A + +
Sbjct: 28 FKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSF 87
Query: 69 HSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKK 128
+ LA+ + + + V F NSG+EA ++L+ Y +
Sbjct: 88 GAPCA----LENVLAEMVNDAV--PSIEMVRFVNSGTEACMAVLRLMRAYT------GRD 135
Query: 129 KFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188
K I + YHG + +G +P V + +
Sbjct: 136 KIIKFEGCYHGHADMFLVKAGSGVATLGLP-SSPGVPKKTTANTLTTPY----------- 183
Query: 189 LANNLEDL--ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEV 246
N+LE + + E P IA I EP++G G I P A + E ++ + ++D L + DEV
Sbjct: 184 --NDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEV 241
Query: 247 ICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFS 306
+ F +K+ + PDL + K + A E+ +++ G
Sbjct: 242 MTGFRI-AYGGVQEKFGVTPDLTTLGKIIGGGLPVG-AYGGKREIMQLVAPA----GPMY 295
Query: 307 HGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA-FSDSPIIGEIRGTGL 365
T SG+P++ I+ L++ ++ E +++I + DG+ A ++
Sbjct: 296 QAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSG 355
Query: 366 ILGTEFADNKSPN--EPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVD 423
+ G F + N + + + F + G+ + S + E++D
Sbjct: 356 MFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFEAGF-TSLAHTEEDID 414
Query: 424 ELISKYGKALKA 435
++ + A
Sbjct: 415 ATLAAARTVMSA 426
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} Length = 429 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Score = 234 bits (596), Expect = 5e-73
Identities = 109/433 (25%), Positives = 199/433 (45%), Gaps = 28/433 (6%)
Query: 4 PFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLN 63
PFT+ V+P + +EG + +G++ +D ++ W G + P+L AA +Q++
Sbjct: 16 PFTSMTSPLPVYP--VVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQID 73
Query: 64 TLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALG 123
+ + F T P+++L ++L+ T + VF +SGS A + +K+ Y A
Sbjct: 74 AMS-HVMFGGITHAPAIELCRKLV-AMTPQPLECVFLADSGSVAVEVAMKMALQYWQAK- 130
Query: 124 RPNKKKFIARQKSYHGSTLIAASLSGLPALHQK-FDLPAPFVLHTDCPHYWRYAHPGETE 182
+++F+ + YHG T A S+ + P L P E +
Sbjct: 131 GEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERD 190
Query: 183 EEYSTRLANNLEDLILKEGPETIAAFIAEPVI-GAGGVIPPPATYFEKVQAVVKKYDILF 241
R ++ IAA I EP++ GAGG+ + ++++ + + IL
Sbjct: 191 MVGFAR--------LMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILL 242
Query: 242 IADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNT 301
IADE+ FGR G +F C+ I PD++ KAL+ M + A L + EV+E I +
Sbjct: 243 IADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGE-- 300
Query: 302 LGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIR 361
G F HG T+ G+P++CA A +L I + + +QV I + ++ + D+ ++ ++R
Sbjct: 301 AGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVR 360
Query: 362 GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEE 421
G I E + A + G+ +R G I + PP+I+ P++
Sbjct: 361 VLGAIGVVETTHPVN-----------MAALQKFFVEQGVWIRPFGKLIYLMPPYIILPQQ 409
Query: 422 VDELISKYGKALK 434
+ L + +A++
Sbjct: 410 LQRLTAAVNRAVQ 422
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} Length = 431 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Score = 217 bits (552), Expect = 2e-66
Identities = 102/428 (23%), Positives = 186/428 (43%), Gaps = 26/428 (6%)
Query: 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNR 74
P++IE+++GS+VYD +G+ LD +G LG P +V+ L H F
Sbjct: 23 EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLD--HLFSEM 80
Query: 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 134
++P +DLA L + T + + ++G+E+N+ +++ K + +
Sbjct: 81 LSRPVVDLATRLANI-TPPGLDRALLLSTGAESNEAAIRMAKLV------TGKYEIVGFA 133
Query: 135 KSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLE 194
+S+HG T AAS + +K PA + +
Sbjct: 134 QSWHGMTGAAASATYSA--GRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAF 191
Query: 195 DLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLG 254
DLI ++ +AAFIAEP++ +GG+I P Y ++ + +L I DE GR G
Sbjct: 192 DLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTG 251
Query: 255 TMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGH 314
TMF C + + PD+++ +K L + + + + T+
Sbjct: 252 TMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHE------LGYLFYTTHVSD 305
Query: 315 PVSCAVAIEALKIYKERNIVEQVNKIAPKFQDG-VKAFSDSPIIGEIRGTGLILGTEFAD 373
P+ AV + L + + +V + N + + + G + IG++RG GL+LG E
Sbjct: 306 PLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVK 365
Query: 374 NKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV-----SGDNIMMSPPFIMSPEEVDELISK 428
++ EP G+GA +C G+ + + G ++PP +S +E+D +S
Sbjct: 366 DRRTKEPA---DGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSL 422
Query: 429 YGKALKAT 436
G+A++
Sbjct: 423 LGQAIERA 430
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} Length = 461 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 191 bits (486), Expect = 1e-56
Identities = 73/448 (16%), Positives = 145/448 (32%), Gaps = 53/448 (11%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
E+S G+Y+ DV+G + LD + + +G S P LV N F +
Sbjct: 36 FCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGI 95
Query: 76 TKPSLDLAK--ELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPN------- 126
P + K E L M+++ GS +N+ K ++ + + R
Sbjct: 96 LPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEE 155
Query: 127 -------------KKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYW 173
++ ++HG T+ + + A+H+ + + +
Sbjct: 156 LETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKY 215
Query: 174 RYAHPGETEEEYSTRLANNLEDL--ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 231
+ ++ R +EDL ++ +T+A I EP+ GG +F K++
Sbjct: 216 PLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLR 275
Query: 232 AVVKKYDILFIADEVICAFGRLG--TMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSP 289
+ +K+ F+ DEV G G D+++F+K + +
Sbjct: 276 DISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFF-------- 327
Query: 290 EVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVK 349
+ + T+ G P + E + I K +++ G+
Sbjct: 328 -----HKEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLL 382
Query: 350 AFSD--SPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGD 407
I +RG G + D I + G+++ GD
Sbjct: 383 DLQARYPQFISRVRGRGTFCSFDTPDES-----------IRNKLISIARNKGVMLGGCGD 431
Query: 408 N-IMMSPPFIMSPEEVDELISKYGKALK 434
I P + ++ + L
Sbjct: 432 KSIRFRPTLVFRDHHAHLFLNIFSDILA 459
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Score = 116 bits (292), Expect = 3e-29
Identities = 55/393 (13%), Positives = 116/393 (29%), Gaps = 53/393 (13%)
Query: 82 LAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGST 141
LA+ + +F T+ G A + ++ ++ K +A + +T
Sbjct: 79 LAESVKNIF---GYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTT 135
Query: 142 LIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEG 201
+ ++G ++ T + ++ LE I + G
Sbjct: 136 QGHSQINGCTVR----NVYIKEAFDTGVRYDFKGNFD-----------LEGLERGIEEVG 180
Query: 202 PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA------FGRLGT 255
P + +A + G P + + ++ KKYDI + D A R
Sbjct: 181 PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAE 240
Query: 256 MFGCDKYSIKPDLVSFAKALSSA-----YMPIGAILV--SPEVSEVIHSQSNTLGSFSHG 308
I + +A L+ + +P+G +L +V
Sbjct: 241 YKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGF 300
Query: 309 FTYSGHPVSCAVAIEA-LKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLIL 367
TY G + L + + DG++ + + G +
Sbjct: 301 PTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEI--GVVCQQAGGHAAFV 358
Query: 368 GTEFADNKSPNEPFPPEWG--------------IGAYFGAQCEKHGMLVRVSGDNIMMSP 413
P + FP + IG++ + K G + + + ++
Sbjct: 359 DAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTI 418
Query: 414 P-FIMSPEEVDELISKYGKALKATEERVKELKS 445
P + +D +I +A K +E +K
Sbjct: 419 PRATYTQTHMDFII----EAFKHVKENAANIKG 447
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Score = 107 bits (267), Expect = 6e-26
Identities = 53/394 (13%), Positives = 119/394 (30%), Gaps = 57/394 (14%)
Query: 82 LAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGST 141
L + E+F + + G A + ++ Y G+ FI+ +H T
Sbjct: 80 LKDKAKELF---NYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISN---FHFDT 133
Query: 142 LIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEG 201
A ++ ++ W+ L++ I + G
Sbjct: 134 TAAHVELNGCKAI---NIVTEKAFDSETYDDWKGDFD-----------IKKLKENIAQHG 179
Query: 202 PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA------FGRLGT 255
+ I A ++ + G P + ++V + K++ I + D R
Sbjct: 180 ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPK 239
Query: 256 MFGCDKYSIKPDLVSFAKALSSA-----YMPIGAILVSPEVSEVIHSQSNTLGSFSHGFT 310
+ D+ +A AL+ + + IG ++ + E+ T
Sbjct: 240 YKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVT 299
Query: 311 YSGHPVSCAVAI-----EALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGL 365
Y G A+ E + + QV + + ++ PI G +
Sbjct: 300 YGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGI-----PIQYPTGGHAV 354
Query: 366 ILGTEFADNKSPNEPFPPEWG--------------IGAYFGAQCEKHGMLVRVSGDNIMM 411
+ + + P + FP + IG++ + G + + +
Sbjct: 355 FVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRL 414
Query: 412 S-PPFIMSPEEVDELISKYGKALKATEERVKELK 444
+ + + + +D + LK +K L+
Sbjct: 415 TIARRVYTNDHMDYIADAL-IGLKEKFATLKGLE 447
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Score = 49.0 bits (115), Expect = 6e-07
Identities = 40/354 (11%), Positives = 89/354 (25%), Gaps = 53/354 (14%)
Query: 82 LAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGST 141
L + E F F SG+ N + + G
Sbjct: 39 LERLAAETF---GKEAALFVPSGTMGNQVSIMAH--------------------TQRGDE 75
Query: 142 LIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEG 201
+I + S + V+ P P + + R +
Sbjct: 76 VILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPR------- 128
Query: 202 PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDK 261
+ E G P +++ + K++ I D + + +
Sbjct: 129 ---TSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKE 185
Query: 262 YSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVA 321
Y+ D V F + ++ + E A
Sbjct: 186 YAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERAR-------KARKMLGGGMRQAGVLAA 238
Query: 322 IEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPF 381
+ + K + +++ ++ A +K S +++ +IL
Sbjct: 239 AGIIALTKMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILR------------T 286
Query: 382 PPEWGIGAYFGAQCEKHGMLVRVSGDN-IMMSPPFIMSPEEVDELISKYGKALK 434
F G+L D I + +S +++E ++ + K +
Sbjct: 287 DNLKVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFR 340
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} Length = 345 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Score = 48.3 bits (113), Expect = 8e-07
Identities = 38/389 (9%), Positives = 83/389 (21%), Gaps = 61/389 (15%)
Query: 48 GGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEA 107
G+ P + A + + T + + + ++ E+F + +VF +G+ A
Sbjct: 13 AGASPEVAQALVKHSSG----QAGPYGTDELTAQVKRKFCEIF--ERDVEVFLVPTGTAA 66
Query: 108 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHT 167
N + + S L A +
Sbjct: 67 N------ALCLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVR 120
Query: 168 DCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYF 227
T
Sbjct: 121 LRERTREKVGD-----------------------VHTTQPACVSITQATEVGSIYTLDEI 157
Query: 228 EKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILV 287
E + V K + D A + + + K + + + + +
Sbjct: 158 EAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLA----- 212
Query: 288 SPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDG 347
E + ++ T S+ ++ + + + K Q
Sbjct: 213 -AEAIVLFNTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRL 271
Query: 348 VKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG 406
+ + + GT IL K G
Sbjct: 272 AQGLEGLGGVEVLGGTEANILFCRLDSAMI----------------DALLKAGFGFYHDR 315
Query: 407 DN---IMMSPPFIMSPEEVDELISKYGKA 432
+ F + E+VD L+++ A
Sbjct: 316 WGPNVVRFVTSFATTAEDVDHLLNQVRLA 344
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Score = 46.3 bits (109), Expect = 4e-06
Identities = 64/441 (14%), Positives = 130/441 (29%), Gaps = 99/441 (22%)
Query: 18 VIEKSEGSYVYDVNGKKYLDSLAGLWCTA--LG-GSEPRLVAAATAQLNTLPFYHSFWNR 74
+I ++ + + +G ++ +C LG + P L+AAA A +++ F +
Sbjct: 30 IITSAQQADITVADGSHVIN-----FCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRF 84
Query: 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 134
D+ +L F+ +
Sbjct: 85 I-----------------------------CGTQDSHKELEQKLA---------AFLGME 106
Query: 135 KSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLE 194
+ S+ A+ L D L+ + + +
Sbjct: 107 DAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDMQELEA 166
Query: 195 DLI-LKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADE-----VIC 248
L +E + V GVI + V + KYD L + D+ +
Sbjct: 167 RLKEAREAGARHVLIATDGVFSMDGVIA----NLKGVCDLADKYDALVMVDDSHAVGFVG 222
Query: 249 AFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHG 308
GR G+ CD + D+++ + G EV E + +S +
Sbjct: 223 ENGR-GSHEYCDVMG-RVDIITGTLGKALGGASGGYTAARKEVVEWLRQRSR-----PYL 275
Query: 309 FTYSGHP-VSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF------SDSPIIGEIR 361
F+ S P + A + + +++ A +F++ + A +D II
Sbjct: 276 FSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAGFTLAGADHAII---- 331
Query: 362 GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--------DNIMMSP 413
++LG D + F + +K G+ V I
Sbjct: 332 --PVMLG----DAVVAQK-----------FARELQKEGIYVTGFFYPVVPKGQARIRTQM 374
Query: 414 PFIMSPEEVDELISKYGKALK 434
+PE++ + + + K
Sbjct: 375 SAAHTPEQITRAVEAFTRIGK 395
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.6 bits (99), Expect = 6e-05
Identities = 49/379 (12%), Positives = 86/379 (22%), Gaps = 54/379 (14%)
Query: 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGS 140
L ++++ +A F + + T L + RP K I + S
Sbjct: 98 SLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHK----RPKAKYIIW-PRIDQKS 152
Query: 141 TLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE 200
+ +G + + L TD +E I +
Sbjct: 153 CFKSMVTAGFEPVVIENV-LEGDELRTDLKA---------------------VEAKIQEL 190
Query: 201 GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT---MF 257
GPE I + A V E++ + YDI + +
Sbjct: 191 GPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQ 246
Query: 258 GCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTY------ 311
G I + S K + + I S S
Sbjct: 247 GARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLS 306
Query: 312 ---SGHPVSCAVAIEALKIYKER------NIVEQVNKIAPKFQDGVKAFSDSPIIGEIRG 362
SG+ E + E++ + +
Sbjct: 307 LGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAV 366
Query: 363 TGLI--LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPE 420
T L L T + G F + + M +
Sbjct: 367 TQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADN---YPCAYLNAAAAIGMKMQ 423
Query: 421 EVDELISKYGKALKATEER 439
+VD I + K L +
Sbjct: 424 DVDLFIKRLDKCLNIVRKE 442
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} Length = 340 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Score = 38.0 bits (86), Expect = 0.002
Identities = 41/384 (10%), Positives = 83/384 (21%), Gaps = 60/384 (15%)
Query: 47 LGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSE 106
G P+++ A L+ A V F + G++
Sbjct: 9 SVGMHPKILDLMARDNM-----TQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQ 63
Query: 107 ANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 166
N L A L
Sbjct: 64 TNLIACSLALRPWEA--------------------------------VIATQLGHISTHE 91
Query: 167 TDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATY 226
T + + R+A+ L + +
Sbjct: 92 TGAIEATGHKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQE 151
Query: 227 FEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAIL 286
E + A K++ + D A + I F + A G L
Sbjct: 152 LEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEAL 211
Query: 287 VSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQD 346
+ + +++ G + + +K + NK+A +
Sbjct: 212 IILNDALKPNARHLI---KQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKA 268
Query: 347 GVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFP--PEWGIGAYFGAQCEKHGMLVRV 404
G++ G A + N+ FP I A + + +
Sbjct: 269 GLE----------------ACGIRLAWPSASNQLFPILENTMI-AELNNDFDMYTVEPLK 311
Query: 405 SGDN-IMMSPPFIMSPEEVDELIS 427
G + + + +E +
Sbjct: 312 DGTCIMRLCTSWATEEKECHRFVE 335
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Score = 37.4 bits (86), Expect = 0.003
Identities = 28/162 (17%), Positives = 46/162 (28%), Gaps = 6/162 (3%)
Query: 160 PAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGV 219
P ET E + E + P T A + P G V
Sbjct: 123 PYWVSYPEMVRFAGGVVVEVETLPEEGFVP--DPERVRRAITPRTKALVVNSPNNPTGAV 180
Query: 220 IPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSS 277
P E + + ++D ++DE+ G F + + + L AKA +
Sbjct: 181 YPKE--VLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAM 238
Query: 278 AYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCA 319
IG EV + + S S + +
Sbjct: 239 TGWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALT 280
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 447 | |||
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 100.0 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 100.0 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 100.0 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 100.0 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 100.0 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 100.0 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 100.0 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 100.0 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 100.0 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 100.0 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 99.94 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.93 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.93 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.92 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.92 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.91 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.91 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.9 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.9 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.9 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.9 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.9 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.89 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.89 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.89 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.89 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.88 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.88 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.87 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.87 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.86 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.85 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.85 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.83 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.83 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.83 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.83 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.81 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.8 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.8 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.79 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.78 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.77 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.77 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.77 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.75 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.75 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.74 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.73 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 99.72 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.72 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.71 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 99.7 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.7 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.7 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.67 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.63 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.63 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.62 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.61 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.58 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.53 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.52 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.41 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.37 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.34 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.31 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.3 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.28 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.25 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.23 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.23 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.21 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.21 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 99.19 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.17 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.15 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.12 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.11 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.1 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.04 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.01 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 98.95 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 98.91 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 98.89 |
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-68 Score=523.41 Aligned_cols=409 Identities=27% Similarity=0.471 Sum_probs=342.5
Q ss_pred CCCCCCcCccCCCCCCe-EEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHH
Q 013204 1 MLAPFTAGWQSTDVHPL-VIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPS 79 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~-~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (447)
.||||+++... +|+ .+++++|+||||.|||+||||.+++++++|||+||+|++|+.++++++.+. .....++++.
T Consensus 13 ~~~p~~~~~~~---~p~~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~-~~~~~~~~~~ 88 (429)
T d1s0aa_ 13 ILHPFTSMTSP---LPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHV-MFGGITHAPA 88 (429)
T ss_dssp BCCTTCCSSSC---CCCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCC-CCSSEECHHH
T ss_pred cCCCcccCCCC---CCCcceEEeECCEEEECCCCEEEECcccHHHHhhcCCcHHHHHHHHHHHHhcCCc-ccCCccchHH
Confidence 49999988544 555 488999999999999999999999999999999999999999999886543 2224577889
Q ss_pred HHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCC-C
Q 013204 80 LDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKF-D 158 (447)
Q Consensus 80 ~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~-~ 158 (447)
.++++++.+.. +.+.++++|++||+||++.|+|++|+++..+|. ++.+||.++++|||.+.++++.++........ .
T Consensus 89 ~~l~~~l~~~~-~~~~~~v~f~~sGseA~e~A~k~ar~~~~~~g~-~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~ 166 (429)
T d1s0aa_ 89 IELCRKLVAMT-PQPLECVFLADSGSVAVEVAMKMALQYWQAKGE-ARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWK 166 (429)
T ss_dssp HHHHHHHHHHS-CTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTC-CCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGT
T ss_pred HHHHHHHHhhh-ccCcceeeeccccccchhhhhhhhhheeecccc-cccEEEEecCCccccchhhhhhcCCccccccccC
Confidence 99999999886 456789999999999999999999999888774 45789999999999999999998865443332 2
Q ss_pred CCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEcccc-CCCCCccCChhHHHHHHHHHHhc
Q 013204 159 LPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVI-GAGGVIPPPATYFEKVQAVVKKY 237 (447)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~-~~~G~~~~~~~~l~~l~~l~~~~ 237 (447)
.........+.+.... ....+.. +++++++.+... ++++++||+||++ +.||.++|+++|+++|+++|++|
T Consensus 167 ~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~-~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~ 238 (429)
T d1s0aa_ 167 GYLPENLFAPAPQSRM--DGEWDER-----DMVGFARLMAAH-RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDRE 238 (429)
T ss_dssp TTSCCCEEECCCCSBC---CCCCGG-----GGHHHHHHHHHH-TTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHH
T ss_pred cccccccccccccccc--ccccchh-----hhhhhhhhhhhc-CCccceeeecceeccCCCccCCCHHHHHHHHHHHHHc
Confidence 2222222222221111 1111111 135555555544 4689999999996 77888899999999999999999
Q ss_pred CCEEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHH
Q 013204 238 DILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVS 317 (447)
Q Consensus 238 g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 317 (447)
|++||+|||++||||+|..|+++++++.||++++||+++||++|+|++++++++++.+... ..+.+.|++||++||++
T Consensus 239 gillI~DEV~tGfGRtG~~~~~~~~~v~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~~--~~~~~~~~~T~~gnp~~ 316 (429)
T d1s0aa_ 239 GILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNG--EAGCFMHGPTFMGNPLA 316 (429)
T ss_dssp TCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTS--TTSSCSCCCTTTTCHHH
T ss_pred CcceehhhccccccccccccccccceecccccccccccccccccccchhhHHHHHhccCCC--CCcceeecCCCCCCccc
Confidence 9999999999999999999999999999999999999999989999999999999988642 23467889999999999
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHH
Q 013204 318 CAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEK 397 (447)
Q Consensus 318 ~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 397 (447)
|++++++|++++++++.++++++++++++.|+++.+.+.+.++++.|++.++++..+.. ...+...|++
T Consensus 317 ~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl~~~~e~~~~~~-----------~~~~~~~~~~ 385 (429)
T d1s0aa_ 317 CAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVN-----------MAALQKFFVE 385 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEEETTEEEEEESSCBC-----------HHHHHHHHHH
T ss_pred chhhhccccccccccccchhhHHHHHHHHHHHHhccCCceEEEeecccEEEEEecCccc-----------HHHHHHHHHH
Confidence 99999999999999999999999999999999997778899999999999999876432 4568899999
Q ss_pred cCceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 398 HGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 398 ~Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+|+++.+.|+.+||+||+++|++|||+++++|+++++++
T Consensus 386 ~Gl~~~~~g~~i~~~Ppl~it~~eid~~~~~l~~al~e~ 424 (429)
T d1s0aa_ 386 QGVWIRPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp TTEECCCBTTEEEECCCTTCCHHHHHHHHHHHHHHTSSG
T ss_pred CCcEEEecCCEEEEeCCcCCCHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999998763
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-68 Score=525.41 Aligned_cols=400 Identities=26% Similarity=0.466 Sum_probs=333.3
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
.++|+++++++|+||||.|||+||||.+++++++|||+||+|.+|+.++++++.+.+ .....+++..++++++.+.++.
T Consensus 20 ~~~P~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~-~~~~~~~~~~~la~~l~~~~p~ 98 (425)
T d1sffa_ 20 QIHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTC-FQVLAYEPYLELCEIMNQKVPG 98 (425)
T ss_dssp CSEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCC-TTTEECHHHHHHHHHHHHHSSC
T ss_pred CCCCceEEEEecCEEEeCCCCEEEEcCcCHHhhcccCCcHHHHHHHHHHHhhcCCcc-cccccCcHHHHHHHHHHhhhhh
Confidence 457999999999999999999999999999999999999999999999999865432 2234688999999999999865
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcc-eecCCCC
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFV-LHTDCPH 171 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 171 (447)
...++++|++||+||++.|+|+++.+ +++.++|.++++|||++.++++.++............+.. ...+++.
T Consensus 99 ~~~~~v~f~~sGseA~e~Alk~ar~~------t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 172 (425)
T d1sffa_ 99 DFAKKTLLVTTGSEAVENAVKIARAA------TKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPC 172 (425)
T ss_dssp SSCEEEEEESSHHHHHHHHHHHHHHH------HTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCB
T ss_pred cccceeeeeccccchhhhHHHHhhhh------hcccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCcc
Confidence 55679999999999999999999988 4678999999999999999999888655444332222221 1122221
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHH-HhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCC
Q 013204 172 YWRYAHPGETEEEYSTRLANNLEDLI-LKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250 (447)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~le~~l-~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~ 250 (447)
. ..+..........++.+ .....+++++||+||+++++|+++|+++||+.|+++|++||++||+|||+|||
T Consensus 173 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~ 244 (425)
T d1sffa_ 173 P--------LHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGA 244 (425)
T ss_dssp G--------GGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred c--------cccccchhhHHHHHHHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccC
Confidence 1 11111111112233332 23345789999999999999999999999999999999999999999999999
Q ss_pred CccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh
Q 013204 251 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE 330 (447)
Q Consensus 251 g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~ 330 (447)
||+|..|+++++|+.||++|+||+++|| +|+|++++++++++.+. ...+++||++||++|++|+++|+++++
T Consensus 245 gR~g~~~a~~~~gv~PDi~~~gK~l~gG-~P~~av~~~~~i~~~~~-------~~~~~~T~~gnpl~~aaa~a~L~~i~~ 316 (425)
T d1sffa_ 245 GRTGTLFAMEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVA-------PGGLGGTYAGNPIACVAALEVLKVFEQ 316 (425)
T ss_dssp TTTSSSSGGGGTTSCCSEEEECGGGGTS-SCCEEEEEEHHHHTTSC-------TTSBCCSSSSCHHHHHHHHHHHHHHHH
T ss_pred CCcchhhHHHhcCCCccceecccccCCC-cceEEEEEcHHHHHhhC-------CCCCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 59999999999998875 346788999999999999999999999
Q ss_pred hcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC---
Q 013204 331 RNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--- 406 (447)
Q Consensus 331 ~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g--- 406 (447)
+++.++++++++++++.|+++ .+++.+..+++.|++++++|..+..... .+......+.++|+++|+++.+.+
T Consensus 317 ~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~f~~~~~~~~---~~~~~~~~~~~~l~~~Gvl~~~~g~~~ 393 (425)
T d1sffa_ 317 ENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNK---PDAKLTAEIVARARDKGLILLSCGPYY 393 (425)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTTS---BCHHHHHHHHHHHHHTTEECEEESTTS
T ss_pred hhhhhhhhhhhhhhhhhhhhhHhhCCceEEEEccccEEEEEEeccCccCC---ccHHHHHHHHHHHHHCCCEEeccCCCC
Confidence 999999999999999999888 7889999999999999999976543221 122345678899999999988764
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 407 DNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 407 ~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
+.|||+||+++|++||++++++|+++++++++
T Consensus 394 n~i~~~PpL~it~~eid~~l~~l~~al~eikk 425 (425)
T d1sffa_ 394 NVLRILVPLTIEDAQIRQGLEIISQCFDEAKQ 425 (425)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 67999999999999999999999999998763
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-67 Score=512.80 Aligned_cols=380 Identities=27% Similarity=0.451 Sum_probs=331.5
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
.++|+++++++|+|+||.|||+||||.+++++++|||+||+|++|+.++++++...+. ...+....++++.+.+..
T Consensus 21 ~p~P~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~-- 96 (404)
T d2byla1 21 HPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSR--AFYNNVLGEYEEYITKLF-- 96 (404)
T ss_dssp CCEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCT--TEEESSHHHHHHHHHHHH--
T ss_pred CCCCceEEEeecCEEEECCCCEEEEecCCHHHHhhcCCCHHHHHHHHHHHhhCCCccc--ccccchHHHHHHhhhhcc--
Confidence 4679999999999999999999999999999999999999999999999998654432 224455667777777774
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcC--CCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALG--RPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP 170 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~--~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (447)
+.++++|++||+||++.|+|++++++...+ ..++.+++.++++|||.+..+++.++.+..+..+.+..+....+|+.
T Consensus 97 -~~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~~ 175 (404)
T d2byla1 97 -NYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYN 175 (404)
T ss_dssp -TCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECTT
T ss_pred -cccccccccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEeccc
Confidence 567999999999999999999998764433 34567899999999999999999998887777766555555555553
Q ss_pred CcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCC
Q 013204 171 HYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250 (447)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~ 250 (447)
+ ++++++.+. .+++++||+||+++++|.++|+++||++|+++|++||++||+|||++||
T Consensus 176 d------------------~~~l~~~l~---~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGf 234 (404)
T d2byla1 176 D------------------LPALERALQ---DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGL 234 (404)
T ss_dssp C------------------HHHHHHHHT---STTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred C------------------HHHHHHhcC---CCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeecccccc
Confidence 3 367777775 4689999999999999999999999999999999999999999999999
Q ss_pred CccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh
Q 013204 251 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE 330 (447)
Q Consensus 251 g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~ 330 (447)
||+|..|+++++|+.||++|+||+|+||++|+|++++++++++.+. ...+++||++||++|++++++|+++++
T Consensus 235 gR~G~~~a~~~~gv~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~-------~~~~~~T~~gnpl~~aaa~a~L~~i~~ 307 (404)
T d2byla1 235 ARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIK-------PGEHFSTYGGNPLGCRVAIAALEVLEE 307 (404)
T ss_dssp TTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSC-------TTSSCCSSTTCHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhcCCCCCEEEECchhhCCCccceeeeechhhhhccC-------CCCCCcCCCcCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999899999999999998875 446788999999999999999999999
Q ss_pred hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-CCEE
Q 013204 331 RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-GDNI 409 (447)
Q Consensus 331 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-g~~i 409 (447)
+++.++++++++++++.|+++ ..+.+.++++.|++.++++.+.... ....+.++|+++|+++.+. ++.|
T Consensus 308 ~~l~~~~~~~g~~l~~~l~~l-~~~~i~~vRg~Gl~~~i~~~~~~~~---------~~~~~~~~l~~~Gvl~~~~~~~~i 377 (404)
T d2byla1 308 ENLAENADKLGIILRNELMKL-PSDVVTAVRGKGLLNAIVIKETKDW---------DAWKVCLRLRDNGLLAKPTHGDII 377 (404)
T ss_dssp TTHHHHHHHHHHHHHHHHHTS-CTTTEEEEEEETTEEEEEECCCSSC---------CHHHHHHHHHHTTEECEEEETTEE
T ss_pred cCchhhhhHhhHHHHHHHHhh-ccccceeeeecccEEEEEEecCCch---------hHHHHHHHHHhCCeEEecCCCCEE
Confidence 999999999999999999998 4467889999999999998764422 1456888999999999875 5789
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 410 MMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 410 R~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
||+||+++|+++||+++++|+++|++
T Consensus 378 ~l~PpL~it~~~id~~~~~l~~al~~ 403 (404)
T d2byla1 378 RFAPPLVIKEDELRESIEIINKTILS 403 (404)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEECCcCCCHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999875
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=100.00 E-value=1.1e-67 Score=519.76 Aligned_cols=402 Identities=26% Similarity=0.481 Sum_probs=334.6
Q ss_pred CCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCC
Q 013204 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASK 94 (447)
Q Consensus 15 ~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 94 (447)
.|+++++++|++|||.|||+||||.+++|+++|||+||+|.+|+.++++++.+.+ ....+++..+++++|++..+ .+
T Consensus 23 ~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~--~~~~~~~~~~la~~L~~~~~-~~ 99 (431)
T d1zoda1 23 EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLF--SEMLSRPVVDLATRLANITP-PG 99 (431)
T ss_dssp CSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCC--TTCCCHHHHHHHHHHHHHSC-TT
T ss_pred CCCeEEEeecCEEEECCCCEEEEcccCHHhhhhcCCCHHHHHHHHHHHhhccccc--cccccHHHHHHHHHHHHhCC-cc
Confidence 4899999999999999999999999999999999999999999999999865432 24578899999999999864 46
Q ss_pred CCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCccc
Q 013204 95 MAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWR 174 (447)
Q Consensus 95 ~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (447)
.++++|++|||||++.|||++|++ +++++|+.|+++|||++.++++.++.+. +............++.+....
T Consensus 100 ~~~v~f~~sGseA~e~Alk~Ar~~------t~r~~i~~~~~~yHG~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 172 (431)
T d1zoda1 100 LDRALLLSTGAESNEAAIRMAKLV------TGKYEIVGFAQSWHGMTGAAASATYSAG-RKGVGPAAVGSFAIPAPFTYR 172 (431)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHH------HTCCEEEEETTCCCCSSHHHHHTCCSSC-CSSSCCCCTTEEEECCCCTTS
T ss_pred cceeeecccccchHHHHHHHHHHh------cCCcceeecccccccccchhhccccccc-ccccCCcccCceeeeeecccc
Confidence 789999999999999999999988 4678999999999999999998887654 333344344444555443322
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccc
Q 013204 175 YAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLG 254 (447)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g 254 (447)
....... ......+++.++..+....++++++||+||+++++|.++|+++|+++|+++|++||++||+|||+|||||+|
T Consensus 173 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG 251 (431)
T d1zoda1 173 PRFERNG-AYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTG 251 (431)
T ss_dssp CCCEETT-EECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS
T ss_pred ccccccc-chhhhhhHHHHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccccccccc
Confidence 2111111 112222345555556566678999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHH
Q 013204 255 TMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIV 334 (447)
Q Consensus 255 ~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~ 334 (447)
..|+++++|+.||++|+||+++|| +|++++++++++++.+... ...+++|++++|++|+++.++|++++++++.
T Consensus 252 ~~~~~~~~gv~PDi~~~gK~l~gG-~p~~av~~~~~~~~~~~~~-----~~~~~~T~~g~pl~~aaa~a~l~~i~~~~~~ 325 (431)
T d1zoda1 252 TMFACQRDGVTPDILTLSKTLGAG-LPLAAIVTSAAIEERAHEL-----GYLFYTTHVSDPLPAAVGLRVLDVVQRDGLV 325 (431)
T ss_dssp SSSTHHHHTCCCSEEEECHHHHTT-SSCEEEEECHHHHHHHHHT-----TCCCCCTTTTCHHHHHHHHHHHHHHHHTTHH
T ss_pred cccccccCCCCcchhccccccccc-cccceeeeeecchhhhhcc-----cccccCCCCCCcchHHHHHHHHHHhhhhhhh
Confidence 999999999999999999999999 6999999999988877542 4467789999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEE-----eeCCE
Q 013204 335 EQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR-----VSGDN 408 (447)
Q Consensus 335 ~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~-----~~g~~ 408 (447)
+++.++++++++.++++ .+++.+.+++|.|+++++++..+.....+.. .....+.+.|+++|++.. +.++.
T Consensus 326 ~~~~~~g~~l~~~l~~~~~~~~~i~~vrG~Glm~~ie~~~~~~~~~~~~---~~~~~i~~~~~~~Gl~~~~~~~~~~~~~ 402 (431)
T d1zoda1 326 ARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPAD---GLGAKITRECMNLGLSMNIVQLPGMGGV 402 (431)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECT---THHHHHHHHHHHTTEECCEECCTTSCCE
T ss_pred HHHHHHHHHHhhhhhhhhhcCCCeEEEeecceEEEEEEecCCcccCccH---HHHHHHHHHHHHhCcccCeeeecCCCCE
Confidence 99999999999998887 6789999999999999999976543322211 245678899999998632 23578
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 409 IMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 409 iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
||++||+++|++|||+++++|+++++++
T Consensus 403 i~l~Ppl~it~~eid~~~~~l~~al~~v 430 (431)
T d1zoda1 403 FRIAPPLTVSEDEIDLGLSLLGQAIERA 430 (431)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999875
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=5.7e-67 Score=505.59 Aligned_cols=369 Identities=27% Similarity=0.502 Sum_probs=323.5
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
..+|+++++++|+|+||.|||+||||.+++++++|||+||+|.+|+.++++++..... ...++...++++.+.+.. +
T Consensus 17 ~~~p~~i~ra~G~~l~d~dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~~~~~~--~~~~~~~~~la~~l~~~~-~ 93 (387)
T d1vefa1 17 NKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQ--TLPTPMRGEFYRTLTAIL-P 93 (387)
T ss_dssp CCCSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCT--TSCCHHHHHHHHHHHHTS-C
T ss_pred CCCCceEEEeEcCEEEECCCCEEEEcchhHHhhhhcCCcHHHHHHHHHHHHhhccccc--ccCCchHHHHHHHhhhhc-c
Confidence 3579999999999999999999999999999999999999999999999998654322 346788889999998875 4
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCc
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHY 172 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
...++++|++||+|||+.|||+++.+ +++.+|+.+.++|||++.++++.++.+.++..+.+......++|+++
T Consensus 94 ~~~~~v~f~~sGseA~e~Aik~Ar~~------t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~~d- 166 (387)
T d1vefa1 94 PELNRVFPVNSGTEANEAALKFARAH------TGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYND- 166 (387)
T ss_dssp TTEEEEEEESSHHHHHHHHHHHHHHH------HSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTC-
T ss_pred ccceeeccccCchHHHHHHHHHHHhh------cccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCCCC-
Confidence 46679999999999999999999988 46789999999999999999999998777666554444444555432
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc
Q 013204 173 WRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252 (447)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~ 252 (447)
++.|++.+. +++++||+||+++++|+++++++||++|+++|++||++||+|||+|||||
T Consensus 167 -----------------~~~l~~~~~----~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR 225 (387)
T d1vefa1 167 -----------------VEALKRAVD----EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGR 225 (387)
T ss_dssp -----------------HHHHHHHCC----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred -----------------HHHHHHhcC----CCeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCc
Confidence 356666553 68999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhc
Q 013204 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERN 332 (447)
Q Consensus 253 ~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~ 332 (447)
+|..++++++++.||++++||+++|| +|++++++++++++.+. ...+++||++||++|++++++|+++++++
T Consensus 226 ~G~~~~~~~~~v~PDi~~~gK~l~gG-~~~~~~~~~~~~~~~~~-------~~~~g~T~~gnPla~aaa~a~L~~l~~~~ 297 (387)
T d1vefa1 226 TGKRFAFEHFGIVPDILTLAKALGGG-VPLGVAVMREEVARSMP-------KGGHGTTFGGNPLAMAAGVAAIRYLERTR 297 (387)
T ss_dssp TSSSSTHHHHTCCCSEEEECGGGGTT-SSCEEEEEEHHHHHTSC-------TTSSCCSSTTCHHHHHHHHHHHHHHHHHT
T ss_pred cCCCcccccCCcCCceeeecccCCCC-ccccccccceeeeeccc-------cCCccccCCCCcchhhhcccchhhccccc
Confidence 99999999999999999999999999 69999999999988775 44688999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEEE
Q 013204 333 IVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIMM 411 (447)
Q Consensus 333 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR~ 411 (447)
+.++++++++++++.|+++ ..+.+..+++.|++.++++.++. ...+.+.++++|+++.+.+ +.+|+
T Consensus 298 ~~~~v~~~g~~l~~~L~~l-~~~~v~~vrg~Gl~~~ie~~~~~------------~~~~~~~~~~~g~l~~~~g~~~ir~ 364 (387)
T d1vefa1 298 LWERAAELGPWFMEKLRAI-PSPKIREVRGMGLMVGLELKEKA------------APYIARLEKEHRVLALQAGPTVIRF 364 (387)
T ss_dssp THHHHHHHHHHHHHHHHTS-CCTTEEEEEEETTEEEEEESSCS------------HHHHHHHHHHHCEECEESSTTEEEE
T ss_pred ccchHhhhhHHHHHHHHhc-CCCceEEEeecceEEEEEEeCCc------------hHHHHHHHHHCCCeEEecCCCEEEE
Confidence 9999999999999999998 45678899999999999997543 4457777888998877664 78999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHH
Q 013204 412 SPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 412 ~~~~~~t~e~i~~~~~~l~~~l 433 (447)
+||+++|++||++++++|+++|
T Consensus 365 ~Ppl~it~~~ld~~~~~i~~aL 386 (387)
T d1vefa1 365 LPPLVIEKEDLERVVEAVRAVL 386 (387)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHH
T ss_pred ECCccCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999987
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=100.00 E-value=5.9e-65 Score=495.39 Aligned_cols=380 Identities=29% Similarity=0.487 Sum_probs=304.8
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
++|+++++++|.+|||.|||+||||.+++|+++|||+||+|++|+.+++++..+.+.. ..+.+..++++.+.+..
T Consensus 20 p~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~--- 94 (404)
T d1z7da1 20 PIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRA--FFSVPLGICERYLTNLL--- 94 (404)
T ss_dssp CEEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTT--SEEHHHHHHHHHHHHHH---
T ss_pred CCCceEEEeecCEEEECCCCEEEEccccHHHHhhhcCcHHHHHHHHHHHHhCCCcccc--cchHHHHHHHHhhhhcc---
Confidence 5799999999999999999999999999999999999999999999999886554332 23445555555555553
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcC--CCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALG--RPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH 171 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~--~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
+.+++.|++||++|++.|++++++++.... ...+.+++.+.++|||.+......++...++...........+.++++
T Consensus 95 ~~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (404)
T d1z7da1 95 GYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDD 174 (404)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTTC
T ss_pred ccceeeeeccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCCccccccccch
Confidence 567899999999999999999998765433 344578999999999999888888877666655544444444444422
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCC
Q 013204 172 YWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG 251 (447)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g 251 (447)
.+.++..+ +++++++||+||+++++|.++|+++||++|+++|++||++||+|||+||||
T Consensus 175 ------------------~~~l~~~~---~~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfg 233 (404)
T d1z7da1 175 ------------------LEALEEEL---KDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLG 233 (404)
T ss_dssp ------------------HHHHHHHH---TSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred ------------------HHHHHHHh---cCCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCC
Confidence 14444433 457899999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh
Q 013204 252 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER 331 (447)
Q Consensus 252 ~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~ 331 (447)
|+|..|+++++|+.||++|+||+++||+.|+|++++++++++.+. ...+++||++||++|++++++|++++++
T Consensus 234 RtG~~~~~e~~gv~PDivt~gK~l~gG~~p~~~v~~~~~i~~~~~-------~~~~~~T~~gnpl~~aaa~a~L~~~~~~ 306 (404)
T d1z7da1 234 RTGKLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIK-------PGEHGSTYGGNPLAASICVEALNVLINE 306 (404)
T ss_dssp TTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCC-------TTCCCCTTTTCHHHHHHHHHHHHHHHHT
T ss_pred cccccccccccCCCCCEEEEcccccCCCCCcccccchHHHHccCC-------CCCcCcCCCCCcchhhhhhhhhhhhhcc
Confidence 999999999999999999999999999889999999999998875 4467889999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEE
Q 013204 332 NIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNI 409 (447)
Q Consensus 332 ~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~i 409 (447)
++.+++.++++++.+.++++ .+++.+..+++.|+++++++.++... ...+.++|+++|+++.+.+ +.|
T Consensus 307 ~~~~~~~~~~~~~~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~----------~~~~~~~l~~~Gl~~~~~~~~~i 376 (404)
T d1z7da1 307 KLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELVN----------VLDICLKLKENGLITRDVHDKTI 376 (404)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTTCC----------HHHHHHHHHHTTEECCEETTTEE
T ss_pred hhhhhhccchhHHHHHHHHHHhcCCCeEEEEeeCcEEEEEEcCCccc----------HHHHHHHHHhCCeEEecCCCCEE
Confidence 99999999999999988776 78899999999999999999865421 3457888999999998765 679
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 410 MMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 410 R~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
||.||+++|+++|++++++|+++++++
T Consensus 377 r~~Ppl~it~~~id~~~~~l~~alk~~ 403 (404)
T d1z7da1 377 RLTPPLCITKEQLDECTEIIVKTVKFF 403 (404)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEECCcCCCHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999875
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=1.5e-64 Score=499.61 Aligned_cols=398 Identities=19% Similarity=0.310 Sum_probs=315.0
Q ss_pred CCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCccccc---CcCCChHHHHHHHHHHH
Q 013204 12 TDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSF---WNRTTKPSLDLAKELLE 88 (447)
Q Consensus 12 ~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~---~~~~~~~~~~l~~~l~~ 88 (447)
...+|+++++++|+|+||.|||+||||.+++++++|||+||+|.+|+.++++...+.+.. ...+.....+|++++.+
T Consensus 32 ~~~~p~~~~~g~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~~a~~lae~l~~ 111 (461)
T d1ohwa_ 32 AVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLS 111 (461)
T ss_dssp TCCCCBCTTTCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGG
T ss_pred CCCCCeEEEEeecCEEEECCCCEEEEcccCHHHHhhcCCcHHHHHHHHHHHhhhhhcccccccccchHHHHHHHHHHHHh
Confidence 355899999999999999999999999999999999999999999999988753322111 11123345567776666
Q ss_pred hcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCC--------------------CCcceEEEEcCCCccchhhhhccc
Q 013204 89 MFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGR--------------------PNKKKFIARQKSYHGSTLIAASLS 148 (447)
Q Consensus 89 ~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~--------------------~~~~~vi~~~~~yhg~~~~~~~~~ 148 (447)
.. +.+.++++|++||+||++.|||+++.++..+++ +++.+||.|+++|||++.++++++
T Consensus 112 ~~-~~~~~~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~t 190 (461)
T d1ohwa_ 112 VA-PKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATT 190 (461)
T ss_dssp GC-CTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTC
T ss_pred hh-ccCcceeeeecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCccccccc
Confidence 64 457789999999999999999999987654321 345689999999999999999999
Q ss_pred CCccccCCCCCCCCcceecCCCCc-ccCCCCCCChhHHHHHHHHHHHHHHHh--hCCCcEEEEEEccccCCCCCccCChh
Q 013204 149 GLPALHQKFDLPAPFVLHTDCPHY-WRYAHPGETEEEYSTRLANNLEDLILK--EGPETIAAFIAEPVIGAGGVIPPPAT 225 (447)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~le~~l~~--~~~~~~a~vi~epv~~~~G~~~~~~~ 225 (447)
+.+.+++.+...... ...+.+.. +.........+.....+.+++++++.. ..++++++||+||+++++|.++|+++
T Consensus 191 g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~ 269 (461)
T d1ohwa_ 191 HSKAIHKIDIPSFDW-PIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDD 269 (461)
T ss_dssp CSCHHHHTTCCCCCC-CEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHH
T ss_pred CCcccccccccccCC-cccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhh
Confidence 987655543322211 11121111 000001111123344556777777643 35678999999999999999999999
Q ss_pred HHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCC--CCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCC
Q 013204 226 YFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIK--PDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLG 303 (447)
Q Consensus 226 ~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~--~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~ 303 (447)
||++|+++|++||++||+|||++||||+|+.|+++++++. ||++|+||+++||+.+.+ ..+. ...
T Consensus 270 fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~~gK~l~~g~~~~~-----~~~~--------~~~ 336 (461)
T d1ohwa_ 270 FFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHK-----EEFR--------PNA 336 (461)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEEEECGGGSSEEEEEC-----GGGS--------CSS
T ss_pred HHHHHHHHHHhhCcceeccccccccccccccccccccccccCchhhhhhhcccccccccc-----cccc--------ccc
Confidence 9999999999999999999999999999999999999984 999999999998753322 2221 112
Q ss_pred ccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc-cCCC-ceeeEeeeeeEEEEEeecCCCCCCCC
Q 013204 304 SFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSP-IIGEIRGTGLILGTEFADNKSPNEPF 381 (447)
Q Consensus 304 ~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~ 381 (447)
...+.+||.++|++|++++++|++++++++.++++++++++++.|+++ .+++ .+.+++|.|+++++++.++.
T Consensus 337 ~~~~~~T~~g~p~~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vrG~Gl~~~ie~~~~~------ 410 (461)
T d1ohwa_ 337 PYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPDES------ 410 (461)
T ss_dssp TTSSCCSCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEEEEECSSHH------
T ss_pred ccccccccccccccchhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEeeeeeEEEEEEcCCHH------
Confidence 456788999999999999999999999999999999999999999998 5564 78899999999999987543
Q ss_pred CCCcchHHHHHHHHHHcCceEEeeC-CEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 382 PPEWGIGAYFGAQCEKHGMLVRVSG-DNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 382 ~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
....+...|+++|+++.+.+ +.|||.||+++|++|||+++++|+++|++
T Consensus 411 -----~~~~i~~~~~~~Gll~~~~~~~~ir~~PpL~it~~eid~~~~~l~~~l~e 460 (461)
T d1ohwa_ 411 -----IRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILAD 460 (461)
T ss_dssp -----HHHHHHHHHHHTTEECEEETTTEEECCCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHCCeEEeeCCCCEEEEeCCcCCCHHHHHHHHHHHHHHHhc
Confidence 45678899999999998876 67999999999999999999999999976
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=100.00 E-value=7.8e-63 Score=483.42 Aligned_cols=394 Identities=21% Similarity=0.328 Sum_probs=318.4
Q ss_pred CCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhc
Q 013204 11 STDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMF 90 (447)
Q Consensus 11 ~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 90 (447)
....+|+++++++|+|+||.|||+||||.+++|+++|||+||+|++|++++++++... ..+.....++++++.+..
T Consensus 30 ~~~~~P~~i~~a~G~~l~D~~G~~ylD~~~~~~~~~lGh~hp~i~~ai~~~~~~~~~~----~~~~~~~~~la~~~~~~~ 105 (427)
T d2gsaa_ 30 SVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSF----GAPCALENVLAEMVNDAV 105 (427)
T ss_dssp TTSSCCCCEEEEEBTEEEETTSCEEEESSGGGTTTTTCBTCHHHHHHHHHHHTTCSCC----SSCCHHHHHHHHHHHHHS
T ss_pred cCCCCCcEEEEeecCEEEECCCCEEEEechhHHHHhccCCcHHHHHHHHHHHHhcCcc----ccchhHHHHHHHHHHhhC
Confidence 3456799999999999999999999999999999999999999999999999875432 335667778888888875
Q ss_pred CcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC
Q 013204 91 TASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP 170 (447)
Q Consensus 91 ~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (447)
+ ..++++|++||+|||+.|+|+++.+ +++++||.++++|||++.++++.++.+.....+... +.......+
T Consensus 106 ~--~~~~v~f~~sGseA~e~Alk~ar~~------t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~-~~~~~~~~~ 176 (427)
T d2gsaa_ 106 P--SIEMVRFVNSGTEACMAVLRLMRAY------TGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSS-PGVPKKTTA 176 (427)
T ss_dssp T--TCSEEEEESSHHHHHHHHHHHHHHH------HCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSC-SSSCHHHHT
T ss_pred C--ccccccccCCcHHHHHHHHHHHHHh------cCCCeEEEEecccccCcceeeeecCCcccccCCCCC-CCCcccCcc
Confidence 3 5679999999999999999999988 467899999999999999999988765433322111 110000000
Q ss_pred CcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCC
Q 013204 171 HYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250 (447)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~ 250 (447)
+.. ....++++.+|+++.+ .++++++||+||+++++|.++|+++||+.|+++|++||++||+|||++||
T Consensus 177 ~~~----------~~~~~~~~~le~~~~~-~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~ 245 (427)
T d2gsaa_ 177 NTL----------TTPYNDLEAVKALFAE-NPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF 245 (427)
T ss_dssp TEE----------EECTTCHHHHHHHHTT-STTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT
T ss_pred cee----------ccCcchHHHHHHHHHh-CCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccc
Confidence 000 0112235778888865 35689999999999999999999999999999999999999999999999
Q ss_pred CccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh
Q 013204 251 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE 330 (447)
Q Consensus 251 g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~ 330 (447)
|+|..|+++++++.||++++||+++|| +|+|++++++++++.+... +.+.+++||++||++|++++++|+++++
T Consensus 246 -r~g~~~~~~~~gi~PDi~~~gK~lggG-~p~~a~~~~~~i~~~~~~~----~~~~~~~T~~gnpla~AAala~Le~i~~ 319 (427)
T d2gsaa_ 246 -RIAYGGVQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAPA----GPMYQAGTLSGNPLAMTAGIKTLELLRQ 319 (427)
T ss_dssp -TTBTTCHHHHTTCCCSEEEECGGGGTT-SCCEEEEECHHHHTTBTTT----SSBCCCCTTTTCHHHHHHHHHHHHHHTS
T ss_pred -eecccchHHhcCCCHHHHhhhhccCCC-cceeeeeehHHHHHHhccc----CCCcCCCCCCCCchhhHHHHHhhHHhhh
Confidence 789999999999999999999999999 6999999999999988632 3457888999999999999999999999
Q ss_pred hcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCC--CCCCCcchHHHHHHHHHHcCceEEeeCC
Q 013204 331 RNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNE--PFPPEWGIGAYFGAQCEKHGMLVRVSGD 407 (447)
Q Consensus 331 ~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~Gi~~~~~g~ 407 (447)
+++.+++++++++|++.|+++ .+++....+.+.+.+.++.+........ ....+......+.+.|+++||++.+.+.
T Consensus 320 ~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~~~ggm~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~~Gv~l~p~~~ 399 (427)
T d2gsaa_ 320 PGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQF 399 (427)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTT
T ss_pred hhHHhhhhHHHHHHHHHHHHHHhhcCCCcEEcccCCeEEEEEeccCCCCHHHhhcccHHHHHHHHHHHHHCCEEECCCCC
Confidence 999999999999999999998 6677766777777788887754331110 0111222345678889999999887653
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 408 NIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 408 ~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
. ++.||+++|++|||+++++|++++++
T Consensus 400 ~-~~~~~l~~Te~dId~~l~al~~al~~ 426 (427)
T d2gsaa_ 400 E-AGFTSLAHTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp S-CEECCTTCCHHHHHHHHHHHHHHHTC
T ss_pred c-ceeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 3 34578999999999999999999875
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.6e-38 Score=305.04 Aligned_cols=349 Identities=19% Similarity=0.249 Sum_probs=258.1
Q ss_pred CeEEEEecCcEEEeCCCCEEEecCCccccccCCCC-CHHHHHHHHHHHhcCCccc---ccCcCCChHHHHHHHHHHHhcC
Q 013204 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGS-EPRLVAAATAQLNTLPFYH---SFWNRTTKPSLDLAKELLEMFT 91 (447)
Q Consensus 16 ~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~ 91 (447)
..++++++|++++|.||++||||+|+ ++||+. ||+|++++.+++++++..+ +...+..+...++++++++++
T Consensus 28 ~~~i~~~~g~~v~~~dG~~~l~f~s~---dYLGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~- 103 (401)
T d1fc4a_ 28 ERIITSAQQADITVADGSHVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL- 103 (401)
T ss_dssp CCCBCSCSSSEEEBTTSCEEEECCCS---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH-
T ss_pred ceeccCCCCCeEEecCCCEEEEEEcc---ccccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHHhh-
Confidence 45688999999999999999999887 678874 9999999999998754432 233456788999999999997
Q ss_pred cCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC
Q 013204 92 ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH 171 (447)
Q Consensus 92 ~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
+.+.+++++||++||..+++.+ .++..+|+.+...|.+...++..+.....+ .+
T Consensus 104 --g~e~al~~~SG~~An~~~i~~l---------~~~~d~i~~d~~~h~s~~~G~~~~~a~~~~------------~~--- 157 (401)
T d1fc4a_ 104 --GMEDAILYSSCFDANGGLFETL---------LGAEDAIISDALNHASIIDGVRLCKAKRYR------------YA--- 157 (401)
T ss_dssp --TCSEEEEESCHHHHHHTTHHHH---------CCTTCEEEEETTCCHHHHHHHHTSCSEEEE------------EC---
T ss_pred --cCCceEEecchhhhhHHHHHHh---------cCCCcEEEeCCcchHHHHccccccCceEEE------------Ec---
Confidence 6789999999999999999976 334556666777777765555444332211 00
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHhh--CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcC
Q 013204 172 YWRYAHPGETEEEYSTRLANNLEDLILKE--GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA 249 (447)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g 249 (447)
+++.+++++++... .+....+|++|+++++.|.+.| |++++++|++||++||+||+|+
T Consensus 158 ---------------~~d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~----L~~l~~L~~~~~a~LivDeah~- 217 (401)
T d1fc4a_ 158 ---------------NNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHA- 217 (401)
T ss_dssp ---------------TTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTT-
T ss_pred ---------------CCChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhh----hhHHHHHHhhcCcEEEehhhhc-
Confidence 01125566655432 2345679999999999998887 9999999999999999999998
Q ss_pred CCcccc--ccccccCCCC--CCee--eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHH
Q 013204 250 FGRLGT--MFGCDKYSIK--PDLV--SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIE 323 (447)
Q Consensus 250 ~g~~g~--~~~~~~~~~~--~d~v--~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a 323 (447)
+|..|. .+..+++++. +|++ ++||+++| .+.|++.+++++++.+.... +. ...+...+|..++++.+
T Consensus 218 ~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg--~~Gg~v~g~~~~~~~l~~~~---~~--~~~s~~l~p~~~~aa~~ 290 (401)
T d1fc4a_ 218 VGFVGENGRGSHEYCDVMGRVDIITGTLGKALGG--ASGGYTAARKEVVEWLRQRS---RP--YLFSNSLAPAIVAASIK 290 (401)
T ss_dssp TTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCS--SSCEEEEECHHHHHHHHHHC---HH--HHHSCCCCHHHHHHHHH
T ss_pred cccccCCCCccchhccCCCCCeEEEeeccccccc--CCcccccCCHHHHHHHHcCC---hh--hhhcCCCCHHHHHHHHh
Confidence 556665 2345666653 5665 68999975 46789999999998886321 11 22355567778888888
Q ss_pred HHHHHhh-hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceE
Q 013204 324 ALKIYKE-RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLV 402 (447)
Q Consensus 324 ~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~ 402 (447)
+++.+.. ++++++++++.+++++.+.+. ..... ...+.++.+.+.++. .+..+.++|+++||++
T Consensus 291 ~l~~~~~~~~~~~~l~~~~~~~~~~l~~~-g~~~~---~~~~pIv~v~~~~~~-----------~a~~~~~~L~~~Gi~v 355 (401)
T d1fc4a_ 291 VLEMVEAGSELRDRLWANARQFREQMSAA-GFTLA---GADHAIIPVMLGDAV-----------VAQKFARELQKEGIYV 355 (401)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHHT-TCCBC---CSSSSEEEEEEECHH-----------HHHHHHHHHHHTTEEC
T ss_pred hhcccccCHHHHHHHHHHHHHHHhhhccc-CCccC---CCCCCEEEEEECCHH-----------HHHHHHHHHHHCCceE
Confidence 8887664 557899999999999998876 22211 112344455555432 3556889999999998
Q ss_pred Eee-------C-CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 403 RVS-------G-DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 403 ~~~-------g-~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.+. + ..+|++++..+|+||||+++++|+++.+++
T Consensus 356 ~~i~~PtVp~g~~~lRi~~~a~hT~edId~~v~al~ev~~~l 397 (401)
T d1fc4a_ 356 TGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp CEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred EeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 753 2 359999999999999999999999998764
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-34 Score=277.29 Aligned_cols=343 Identities=18% Similarity=0.252 Sum_probs=257.6
Q ss_pred CCeEEEEecCcEEEeCCCCEEEecCCccccccCCC-CCHHHHHHHHHHHhcCCc---ccccCcCCChHHHHHHHHHHHhc
Q 013204 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLPF---YHSFWNRTTKPSLDLAKELLEMF 90 (447)
Q Consensus 15 ~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~ 90 (447)
.+.++.++.|.++. .||++|+||+|+ ++||. .||++++++.+++++++. .++.+.+..+.+.+|++++++++
T Consensus 21 ~~~~~~~~~g~~i~-~~g~~~l~f~s~---dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~ 96 (383)
T d1bs0a_ 21 RRYPVAQGAGRWLV-ADDRQYLNFSSN---DYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL 96 (383)
T ss_dssp CCCCCSBCSSSEEE-ETTEEEEECSCC---CTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCeEE-ECCeEEEEEEcc---cccccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhc
Confidence 34567899999997 999999999888 67886 599999999999988543 23455678899999999999997
Q ss_pred CcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC
Q 013204 91 TASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP 170 (447)
Q Consensus 91 ~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (447)
+.+.+++++||+.||..++... .++..+++.+...|.+...+...++.....
T Consensus 97 ---g~e~al~~~SG~~an~~~i~al---------~~~~d~v~~d~~~h~si~~g~~~~~~~~~~---------------- 148 (383)
T d1bs0a_ 97 ---GYSRALLFISGFAANQAVIAAM---------MAKEDRIAADRLSHASLLEAASLSPSQLRR---------------- 148 (383)
T ss_dssp ---TCSEEEEESCHHHHHHHHHHHH---------CCTTCEEEEETTCCHHHHHHHHTSSSEEEE----------------
T ss_pred ---CCCceEEecccchhhHHHHHhh---------cCCCceEEeeccccHHHhhccccCCCcceE----------------
Confidence 6779999999999999999876 345677788888998876665544432211
Q ss_pred CcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCC
Q 013204 171 HYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250 (447)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~ 250 (447)
+.+++.+++++.+....+ ...+|++|+++++.|.+.| +++|.++|++||++||+||+|+ +
T Consensus 149 --------------~~hnd~~~le~~l~~~~~-~~~~vv~e~v~s~~G~i~p----l~~l~~l~~~~~~~livDeah~-~ 208 (383)
T d1bs0a_ 149 --------------FAHNDVTHLARLLASPCP-GQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHG-T 208 (383)
T ss_dssp --------------ECTTCHHHHHHHHHSCCS-SCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTT-T
T ss_pred --------------ecchHHHHHHHHhcccCC-CceEEEecCCCCCCCcccc----hhHHHHHHHhcCcEEEeeccee-e
Confidence 112235888888876544 4568999999999999988 9999999999999999999997 5
Q ss_pred Cccccc--cccccCCCCCCee--eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHH
Q 013204 251 GRLGTM--FGCDKYSIKPDLV--SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALK 326 (447)
Q Consensus 251 g~~g~~--~~~~~~~~~~d~v--~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~ 326 (447)
|..|.. +..+++++.++++ ++||+++. +.|+++++.++++.++... .....+...+|..+++++++++
T Consensus 209 gv~G~~g~G~~~~~~~~~~~~~~t~~ka~g~---~Gg~v~~~~~~~~~l~~~~-----~~~~~s~~~~p~~~aa~~~a~~ 280 (383)
T d1bs0a_ 209 GVIGEQGRGSCWLQKVKPELLVVTFGKGFGV---SGAAVLCSSTVADYLLQFA-----RHLIYSTSMPPAQAQALRASLA 280 (383)
T ss_dssp TTSSGGGCCHHHHTTCCCSEEEEESSSTTSS---CCEEEEECHHHHHHHHHHC-----HHHHSSBCCCHHHHHHHHHHHH
T ss_pred eecCCcccchHHHcCCccccccccccccccc---cccccccchhHHHHHHhhc-----hhhhhcccccchHHHHHHHHHH
Confidence 555543 3357888888876 47788775 4588999999988886431 1223455667888888888888
Q ss_pred HHhhh---cHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEE
Q 013204 327 IYKER---NIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR 403 (447)
Q Consensus 327 ~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~ 403 (447)
+++.. ...++..++..++++.|+++ .+. ...+.+.++.+.+.++. .+..+.++|+++||++.
T Consensus 281 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~-g~~---~~~~~s~Ii~v~~g~~~-----------~a~~~~~~L~~~Gi~v~ 345 (383)
T d1bs0a_ 281 VIRSDEGDARREKLAALITRFRAGVQDL-PFT---LADSCSAIQPLIVGDNS-----------RALQLAEKLRQQGCWVT 345 (383)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCE---ECSCCSSBCCEEEESHH-----------HHHHHHHHHHHTTEECC
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhc-CCc---cCCCCCCEEEEEECCHH-----------HHHHHHHHHHHCCceEE
Confidence 77643 35567777888888888776 111 11122333334443321 35568899999999987
Q ss_pred ee-------C-CEEEEecCCCCCHHHHHHHHHHHHHH
Q 013204 404 VS-------G-DNIMMSPPFIMSPEEVDELISKYGKA 432 (447)
Q Consensus 404 ~~-------g-~~iR~~~~~~~t~e~i~~~~~~l~~~ 432 (447)
+. | ..+|++++..+|+||||+++++|+.+
T Consensus 346 ~~~~PtVp~g~~~lRi~~~a~ht~edid~l~~~L~~~ 382 (383)
T d1bs0a_ 346 AIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 382 (383)
T ss_dssp EECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred EEcCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 53 2 35999999999999999999998764
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=100.00 E-value=2.2e-31 Score=254.36 Aligned_cols=345 Identities=19% Similarity=0.201 Sum_probs=250.8
Q ss_pred eEEEEecCcEE------EeCCCCEEEecCCccccccCCC-CCHHHHHHHHHHHhcCCc---ccccCcCCChHHHHHHHHH
Q 013204 17 LVIEKSEGSYV------YDVNGKKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLPF---YHSFWNRTTKPSLDLAKEL 86 (447)
Q Consensus 17 ~~~~~~~g~~~------~d~dg~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l 86 (447)
..+.+..|.+. .+.++++++||+|+ ++||. .||++++++.+++++++. .++...+..+.+.+|++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~FsSn---dYLGL~~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~l 99 (396)
T d2bwna1 23 IDIEREKGAFPKAQWNRPDGGKQDITVWCGN---DYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEI 99 (396)
T ss_dssp CEEEECTTSTTEEEEECTTSCEEEEEECSCS---CTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHH
T ss_pred cccccccCCCCcceEeecCCCCeEEEEEEcc---cccCcCCCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHH
Confidence 34566666421 22346899999988 67775 799999999999987543 3445677889999999999
Q ss_pred HHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCccee
Q 013204 87 LEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 166 (447)
Q Consensus 87 ~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (447)
++++ +.+.+++++||+.||..++..+... +++.+|+.+...|.+....+..++.....
T Consensus 100 A~~~---g~e~all~~sG~~An~~~i~~l~~~-------~~~d~i~~D~~~Hasi~~g~~ls~a~~~~------------ 157 (396)
T d2bwna1 100 AGLH---QKEAALVFSSAYNANDATLSTLRVL-------FPGLIIYSDSLNHASMIEGIKRNAGPKRI------------ 157 (396)
T ss_dssp HHHT---TCSEEEEESCHHHHHHHHHHHHHHH-------STTCEEEEETTCCHHHHHHHHHSCCCEEE------------
T ss_pred HHHh---CCCceeeeecchHHHHHHHHHHhcc-------cCCCceeehhhhhhccchhhhccccCceE------------
Confidence 9997 6778999999999999999865322 24568888888898876666655533211
Q ss_pred cCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehh
Q 013204 167 TDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEV 246 (447)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv 246 (447)
|.|++.+++++++....+.....|++|.++++.|.+.| |++|.++|++||++|++||+
T Consensus 158 ------------------f~Hnd~~~l~~l~~~~~~~~~~~iv~egvySmdGd~ap----l~~l~~L~~~y~~~L~vDeA 215 (396)
T d2bwna1 158 ------------------FRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEV 215 (396)
T ss_dssp ------------------ECTTCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECT
T ss_pred ------------------eecchHHHhhhHHhhhcccCceeEEEEeeccCcccccc----cHhHHHHhhhhcceeeeccc
Confidence 11222477888877666666778999999999999999 99999999999999999999
Q ss_pred hcCCCccccc--cccccCCCC--CCee--eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHH
Q 013204 247 ICAFGRLGTM--FGCDKYSIK--PDLV--SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAV 320 (447)
Q Consensus 247 ~~g~g~~g~~--~~~~~~~~~--~d~v--~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a 320 (447)
|+ +|..|+. +..+++++. .|++ +|||++|+.+ |++++++++++.+.... ++ ...+.+.+|..+++
T Consensus 216 Hs-~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~~G---g~v~~~~~~i~~l~~~~---~~--~ifStalpp~~~aa 286 (396)
T d2bwna1 216 HA-VGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG---GYIAASARMVDAVRSYA---PG--FIFSTSLPPAIAAG 286 (396)
T ss_dssp TT-TTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC---EEEEECHHHHHHHHHHC---HH--HHTSBCCCHHHHHH
T ss_pred ee-eeeeccccccchhhcCCceeeeeeeecccccccccc---cccchhHHHHHHHHhhc---ch--hhhcccCcHHHHHH
Confidence 97 7776652 234555553 4665 6899998743 78999999999887431 12 22345566777888
Q ss_pred HHHHHHHHhhh---cHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-
Q 013204 321 AIEALKIYKER---NIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE- 396 (447)
Q Consensus 321 a~a~l~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~- 396 (447)
+.++++++..+ ..+..++.+.+++++.|.++ ..++. ...+.++.+.+.++. .+..+.++|+
T Consensus 287 ~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~-g~~~~---~~~spIvpv~ig~~~-----------~~~~~a~~lL~ 351 (396)
T d2bwna1 287 AQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-GMPII---DHGSHIVPVVIGDPV-----------HTKAVSDMLLS 351 (396)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC---CCSSSCEEEECCCHH-----------HHHHHHHHHHH
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhc-CCCcC---CCCCCEEEEEeCCHH-----------HHHHHHHHHHH
Confidence 88888887643 24566677888898888876 22221 112334455554322 3455777765
Q ss_pred HcCceEEee-------C-CEEEEecCCCCCHHHHHHHHHHHHHH
Q 013204 397 KHGMLVRVS-------G-DNIMMSPPFIMSPEEVDELISKYGKA 432 (447)
Q Consensus 397 ~~Gi~~~~~-------g-~~iR~~~~~~~t~e~i~~~~~~l~~~ 432 (447)
++||++.+. + .++|++++..||++|||+++++|++.
T Consensus 352 e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l~~~L~~i 395 (396)
T d2bwna1 352 DYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLL 395 (396)
T ss_dssp HHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred hCCEEEEEECCCcCCCCCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence 689998753 2 56999999999999999999999874
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=9.1e-25 Score=210.29 Aligned_cols=340 Identities=15% Similarity=0.113 Sum_probs=212.9
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhHH
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEAN 108 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA~ 108 (447)
.+|+++|||+.|.. .|. .+|+|++++.+++++....|+...+..+....+++.+.+... ...++++++++|+++|+
T Consensus 28 ~~G~~vi~l~~g~p--~~~-~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al 104 (382)
T d1b5pa_ 28 RQGVDLVALTAGEP--DFD-TPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQAL 104 (382)
T ss_dssp HTTCCCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHH
T ss_pred hCCCCeEECCCCCC--CCC-CCHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCHHHHH
Confidence 46889999987742 233 578999999999887544444333444555566666555432 24678999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHH
Q 013204 109 DTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188 (447)
Q Consensus 109 ~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (447)
..+++... ..++.|++.+|+|++........+.... .++......+. .
T Consensus 105 ~~~~~~l~--------~~gd~vl~~~P~y~~~~~~~~~~g~~~~-------------~v~~~~~~~~~---~-------- 152 (382)
T d1b5pa_ 105 FNLFQAIL--------DPGDEVIVLSPYWVSYPEMVRFAGGVVV-------------EVETLPEEGFV---P-------- 152 (382)
T ss_dssp HHHHHHHC--------CTTCEEEEEESCCTHHHHHHHHTTCEEE-------------EEECCGGGTTC---C--------
T ss_pred HHHHHHhC--------CCCCEEEECCCCcHHHHHHHHHhcCeEE-------------EEecccccccC---C--------
Confidence 99998763 3347899999999988654443332111 11110000000 0
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCe
Q 013204 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDL 268 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~ 268 (447)
+++++++.+ .++....++++|.|++| .+.+.+.+++|.++|++||+++|.||+|..+...+........ ....+
T Consensus 153 d~~~l~~~~---~~~~~~i~~~~P~NPTG--~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~-~~~~~ 226 (382)
T d1b5pa_ 153 DPERVRRAI---TPRTKALVVNSPNNPTG--AVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRV-APEHT 226 (382)
T ss_dssp CHHHHHTTC---CTTEEEEEEESSCTTTC--CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGT-CTTTE
T ss_pred CHHHHHHhC---CCCCeEEEECCCCCCcc--hhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHc-CCCCE
Confidence 025555433 34444566677766665 5678899999999999999999999999988666654322111 11222
Q ss_pred e---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHH-Hhh----hcHHHHHHHH
Q 013204 269 V---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKI-YKE----RNIVEQVNKI 340 (447)
Q Consensus 269 v---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~-~~~----~~~~~~~~~~ 340 (447)
+ ++||.++-+++++|++++++++++.+... ........+.+...++.+.+.. ... ....+.++.+
T Consensus 227 i~~~s~SK~~~~~GlR~G~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (382)
T d1b5pa_ 227 LTVNGAAKAFAMTGWRIGYACGPKEVIKAMASV-------SRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRR 299 (382)
T ss_dssp EEEEESTTTTTCGGGCCEEEECCHHHHHHHHHH-------HHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred EEEecchhhccCcHhheEEEEECHHHHHHHHHH-------HHhcccCcccccccccccccccccchhHHHHHHHHHHHhh
Confidence 2 57999874449999999999988877531 1222334444444444333321 111 1223444445
Q ss_pred HHHHHHhHhhccCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-----CEEEEecC
Q 013204 341 APKFQDGVKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-----DNIMMSPP 414 (447)
Q Consensus 341 ~~~l~~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-----~~iR~~~~ 414 (447)
.+.+.+.++.+ ... ...+. |.++.+++..... ....+.+.|+++||.+.|+. +.+|++
T Consensus 300 ~~~~~~~l~~~-g~~---~~~p~gg~~~~~~~~~~~~----------~~~~~~~~l~e~gV~v~PG~~F~~~~~iRis-- 363 (382)
T d1b5pa_ 300 RDLLLEGLTAL-GLK---AVRPSGAFYVLMDTSPIAP----------DEVRAAERLLEAGVAVVPGTDFAAFGHVRLS-- 363 (382)
T ss_dssp HHHHHHHHHHH-TCC---BCCCSBTTEEEEECTTTCS----------SHHHHHHHHHHTTEECEESGGGTCTTEEEEE--
T ss_pred hhHHHHHHhhc-CCe---EecCCceEEEeEeCCCCCC----------CHHHHHHHHHHCCEEEEeCcccCCCCeEEEE--
Confidence 55555555554 211 22334 4455666643211 14557888999999999862 679999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 013204 415 FIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 415 ~~~t~e~i~~~~~~l~~~l 433 (447)
+..++|+|++++++|.+++
T Consensus 364 ~~~~~e~l~~al~rl~~~L 382 (382)
T d1b5pa_ 364 YATSEENLRKALERFARVL 382 (382)
T ss_dssp CCSCHHHHHHHHHHGGGGC
T ss_pred EcCCHHHHHHHHHHHHHhC
Confidence 6679999999999998753
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.93 E-value=3.5e-25 Score=218.84 Aligned_cols=366 Identities=14% Similarity=0.150 Sum_probs=215.4
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDT 110 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~ 110 (447)
.++.++||.+.+++..+++ ...+ .+..+...+ +..+...+|++++++++ +.++++|++||++||+.
T Consensus 40 ~~~~~id~~sd~~t~~~~~---~~~a----~~~~gd~~y----~~~~~~~~le~~~a~l~---g~~~~~~~~sGt~A~~~ 105 (465)
T d1ax4a_ 40 SSAVYIDLLTDSGTNAMSD---HQWA----AMITGDEAY----AGSRNYYDLKDKAKELF---NYDYIIPAHQGRGAENI 105 (465)
T ss_dssp GGGCSEECSCSSSCCCEEH---HHHH----HHHTCCCCS----SSCHHHHHHHHHHHHHH---CCCEEEEESSHHHHHHH
T ss_pred ccCeeeecccccchhhhhH---HHHH----HHhhhhhhh----ccChHHHHHHHHHHHHH---CCCEEEECCCcHHHHHH
Confidence 4567899998877655442 1122 222222221 24566778999999997 67899999999999999
Q ss_pred HHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh-hcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHH
Q 013204 111 QVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA-ASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189 (447)
Q Consensus 111 Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (447)
|+++++++....+..+...++ +.||+.+..+ ....|....... .........++. .. ...+
T Consensus 106 a~~~~~~~g~~~~~~~~~~i~---~~~h~~t~~~~~~~~g~~~~~~~----~~~~~~~~~~~~-----~~------~~~d 167 (465)
T d1ax4a_ 106 LFPVLLKYKQKEGKAKNPVFI---SNFHFDTTAAHVELNGCKAINIV----TEKAFDSETYDD-----WK------GDFD 167 (465)
T ss_dssp HHHHHHHHHHHTTCCSSCEEE---ESSCCHHHHHHHHHTTCEEEECB----CGGGGCTTSCCT-----TT------TCBC
T ss_pred HHHHHHHHHHhcCCCCCeEEe---ccchhhhhHHHHHHcCCeeeccc----ccccCCCCCCCC-----cc------CccC
Confidence 999999887776655434332 4667654433 222232111000 000000000000 00 1112
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcC------CCccccccccccCC
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA------FGRLGTMFGCDKYS 263 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g------~g~~g~~~~~~~~~ 263 (447)
.+.|++++....++.+++++++++++++|..+++.++|++|+++|++||++||+||+++. .++.+..+.....+
T Consensus 168 ~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (465)
T d1ax4a_ 168 IKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKE 247 (465)
T ss_dssp HHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHH
T ss_pred HHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccccccccchhh
Confidence 488898888777778999999999999999999999999999999999999999999872 22232222222222
Q ss_pred C------CCCeeeecccCCCcccceeEEEeChh--HHHHhhhccCCCCccCcCCCCCC-cHHHHHHHHHHHHHHhhhcHH
Q 013204 264 I------KPDLVSFAKALSSAYMPIGAILVSPE--VSEVIHSQSNTLGSFSHGFTYSG-HPVSCAVAIEALKIYKERNIV 334 (447)
Q Consensus 264 ~------~~d~v~~sK~l~gg~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~t~~~-~~~~~~aa~a~l~~~~~~~~~ 334 (447)
+ ..|++++||..+++++..|+++.++. +........ ....+..++.. ...++.++...+.....++..
T Consensus 248 i~~~~~~~~d~~s~s~~k~~~~~~~g~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~ 324 (465)
T d1ax4a_ 248 VIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRC---VPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYL 324 (465)
T ss_dssp HHHHHGGGCSEEEEETTSTTCCSSCEEEEESSCHHHHHHHHHHH---HHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred hccccccccceeEeecccCcccccceeEeecchHHHHHhhhccc---cccccCCCcchhhHHHHHHHhhhhHHhhhHHHH
Confidence 2 25788888877766566677777653 222221100 01112223332 233333333333333345566
Q ss_pred HHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee---------
Q 013204 335 EQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS--------- 405 (447)
Q Consensus 335 ~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--------- 405 (447)
++..++.+++++.|+++ ..+.+....+.+.+..............+ .........+.+.||.+...
T Consensus 325 ~~~~~~~~~l~~~L~~~-g~~~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ll~~~GI~~~~~~~~~~~~~~ 399 (465)
T d1ax4a_ 325 HYRIGQVKYLGDRLREA-GIPIQYPTGGHAVFVDCKKLVPQIPGDQF----PAQAVINALYLESGVRAVEIGSFLLGRDP 399 (465)
T ss_dssp HHHHHHHHHHHHHHHHT-TCCBCSSCCSSEEEEESTTTCTTSCGGGC----HHHHHHHHHHHHHCEECEEESHHHHCBCT
T ss_pred HHHHHHHHHHHHHHHhh-cCccccCCCcceeeeehhhhcCCCccccc----hhHHHHHHHHHhcCceecccccccccccc
Confidence 77777888999999886 33444333333333221111111111101 01223445566778875532
Q ss_pred ---------CCEEEEe-cCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 406 ---------GDNIMMS-PPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 406 ---------g~~iR~~-~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.+.+||+ |+..+|+||||.++++|++++++.
T Consensus 400 ~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~~~ 440 (465)
T d1ax4a_ 400 ATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKF 440 (465)
T ss_dssp TTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHH
T ss_pred ccCCccCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 1469997 557889999999999999987764
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.93 E-value=2.1e-24 Score=207.95 Aligned_cols=344 Identities=13% Similarity=0.090 Sum_probs=218.3
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhHH
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEAN 108 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA~ 108 (447)
.+|+.++||+.|.. .|. .+|.+++++.+++++....|+...+..+....+++.+.+.+. ...++++++++|+++|+
T Consensus 27 ~~g~~vi~l~~G~p--~~~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al 103 (388)
T d1j32a_ 27 AEGIDVCSFSAGEP--DFN-TPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSI 103 (388)
T ss_dssp TTTCCCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred HCCCCeEECCCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHH
Confidence 46889999987742 233 578999999999876544343333344455556666655542 34678999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHH
Q 013204 109 DTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188 (447)
Q Consensus 109 ~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (447)
..+++... ..++.|++.+|+|.++........+.... ++......+. .
T Consensus 104 ~~~~~~~~--------~~gd~Vlv~~P~y~~~~~~~~~~~~~~v~-------------~~~~~~~~~~-----------~ 151 (388)
T d1j32a_ 104 FNLMLAMI--------EPGDEVIIPAPFWVSYPEMVKLAEGTPVI-------------LPTTVETQFK-----------V 151 (388)
T ss_dssp HHHHHHHC--------CTTCEEEEESSCCTHHHHHHHHTTCEEEE-------------ECCCGGGTTC-----------C
T ss_pred HHHHHHHh--------CCCCEEEEcCCCcHHHHHHHHHhcCeEEE-------------EecccccccC-----------C
Confidence 99998763 33578999999998876544433332211 1110000000 0
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCC--
Q 013204 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKP-- 266 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~-- 266 (447)
+++++++.+. ++....++++|.|++| ...+.+.+++|.++|++||+++|.||+|..+...+..... .....+
T Consensus 152 d~~~l~~~~~---~~~~~~~~~~P~NPTG--~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s-~~~~~~~~ 225 (388)
T d1j32a_ 152 SPEQIRQAIT---PKTKLLVFNTPSNPTG--MVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLS-IGAASPEA 225 (388)
T ss_dssp CHHHHHHHCC---TTEEEEEEESSCTTTC--CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCC-GGGSCHHH
T ss_pred CHHHHHHhCC---CCCeEEEECCCCCCCC--cccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCC-HHHhCccc
Confidence 1366666553 4445667777766665 5678999999999999999999999999877555432211 001111
Q ss_pred ---C--eeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh--hcHHHHHHH
Q 013204 267 ---D--LVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE--RNIVEQVNK 339 (447)
Q Consensus 267 ---d--~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~--~~~~~~~~~ 339 (447)
. +-++||.++..++|+|++++++++++.+... ........+..++.++...++..++ .+....+++
T Consensus 226 ~~~~i~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~-------~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~ 298 (388)
T d1j32a_ 226 YERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATKI-------QGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAE 298 (388)
T ss_dssp HHTEEEEEESTTTTTCTTTCCEEEECCHHHHHHHHHH-------HHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHH
T ss_pred ccceeEecCChhhhhcchhHeEEEEECHHHHHHHHHh-------hhhccccccHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 1 2358999874449999999999998877532 1223445566666666555542111 223455555
Q ss_pred HHHHHHHhHhhccCCCceeeEeeee-eEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEee-----CCEEEEe
Q 013204 340 IAPKFQDGVKAFSDSPIIGEIRGTG-LILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVS-----GDNIMMS 412 (447)
Q Consensus 340 ~~~~l~~~L~~l~~~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-----g~~iR~~ 412 (447)
+.+.+.+.|+++ +.+....+.| .++.+++..... ....+.++|+ ++||.+.|+ .+.+|++
T Consensus 299 ~~~~~~~~l~~~---~g~~~~~p~gg~~l~~~l~~~~~----------~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls 365 (388)
T d1j32a_ 299 RRRYMLDALNAM---PGLECPKPDGAFYMFPSIAKTGR----------SSLDFCSELLDQHQVATVPGAAFGADDCIRLS 365 (388)
T ss_dssp HHHHHHHHHHTC---TTCBCCCCCBTTEECCBCGGGTC----------CHHHHHHHHHHHHCEECEEGGGGTCTTBEEEE
T ss_pred HHHHHHHHHHhC---CCCEecCCCceEEEEEECCCCCC----------CHHHHHHHHHHhCCEEEEeccccCCCCeEEEE
Confidence 556666666554 2232333444 455555543221 1334666665 679999986 2679999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 413 PPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 413 ~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+..++++|++++++|+++++.+
T Consensus 366 --~~~~~e~l~~al~rl~~~l~~l 387 (388)
T d1j32a_ 366 --YATDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp --CCSCHHHHHHHHHHHHHHHHHH
T ss_pred --EeCCHHHHHHHHHHHHHHHHHh
Confidence 6689999999999999999875
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.92 E-value=5.5e-24 Score=205.29 Aligned_cols=342 Identities=12% Similarity=0.073 Sum_probs=209.9
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC--cCCCCeEEEeCChhhHHH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT--ASKMAKVFFTNSGSEAND 109 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~v~~~~sGseA~~ 109 (447)
++++|||..|. ..++ .++.|++++.+++++....|+...+..+....+++.+.+... ....++|++++|+++++.
T Consensus 24 ~~dvi~l~~g~--p~~~-~p~~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~ 100 (388)
T d1gdea_ 24 MKDVISLGIGE--PDFD-TPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFL 100 (388)
T ss_dssp CTTCEECCCCS--CCSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHH
T ss_pred CCCeEECCCCC--CCCC-CCHHHHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHHH
Confidence 45688987664 2344 578999999999877544333323344444555555544332 235568999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (447)
.++.... ..++.|++.+|+|.+........+.... .++......+. . +
T Consensus 101 ~~~~~l~--------~~gd~vlv~~P~y~~~~~~~~~~g~~~~-------------~~~~~~~~~~~---~--------d 148 (388)
T d1gdea_ 101 MGLSAFL--------KDGEEVLIPTPAFVSYAPAVILAGGKPV-------------EVPTYEEDEFR---L--------N 148 (388)
T ss_dssp HHHTTTC--------CTTCEEEEEESCCTTHHHHHHHHTCEEE-------------EEECCGGGTTC---C--------C
T ss_pred HHHHHhc--------CCCCEEEECCCCcHHHHHHHHHcCCEEE-------------EeecccccCCC---C--------C
Confidence 9988653 3457899999999988655544332211 11110000000 0 1
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-ccccCCCCCC-
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-GCDKYSIKPD- 267 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~~~~~~~~~d- 267 (447)
+++|++.+. ++....++++|.|++| ...+.+.+++|.++|++|++++|.||+|..+...+... ........++
T Consensus 149 ~~~l~~~~~---~~~~~i~~~~P~NPtG--~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~ 223 (388)
T d1gdea_ 149 VDELKKYVT---DKTRALIINSPCNPTG--AVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFER 223 (388)
T ss_dssp HHHHHHHCC---TTEEEEEEESSCTTTC--CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGG
T ss_pred HHHHHHhCc---cCCeEEEECCCcCCCC--CcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCe
Confidence 366666553 3444566666766655 56788999999999999999999999999875544322 1222211222
Q ss_pred ee---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh----hcHHHHHHHH
Q 013204 268 LV---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE----RNIVEQVNKI 340 (447)
Q Consensus 268 ~v---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~----~~~~~~~~~~ 340 (447)
++ +|||.++.+++++|++++++++++.+... ........+.+...++.++++.... ......++++
T Consensus 224 ~i~~~S~SK~~~~~GlR~G~ii~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 296 (388)
T d1gdea_ 224 TITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKF-------QMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRR 296 (388)
T ss_dssp EEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHH-------HHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCChhhccCccccEEEEEeeccchhhhhhc-------cccccccccccchhhHHHHHhhccchhHHHHHHHHHHHh
Confidence 22 68999874448999999999987777532 2223444555555555555532111 1223334444
Q ss_pred HHHHHHhHhhccCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEee-------CCEEEE
Q 013204 341 APKFQDGVKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVS-------GDNIMM 411 (447)
Q Consensus 341 ~~~l~~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------g~~iR~ 411 (447)
...+.+.|... ... ...+. |.++.+++.+... ....+.++|+ +.||.+.|+ .+.+|+
T Consensus 297 ~~~~~~~l~~~---~~~-~~~p~gg~fl~~~l~~~~~----------~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRi 362 (388)
T d1gdea_ 297 RKLVWKRLNEM---GLP-TVKPKGAFYIFPRIRDTGL----------TSKKFSELMLKEARVAVVPGSAFGKAGEGYVRI 362 (388)
T ss_dssp HHHHHHHHHHT---TCC-CCCCCBTTEECCBCGGGTC----------CHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEE
T ss_pred hhhhhhhhhhc---ccc-ccCCCceEEEEEECCCCCC----------CHHHHHHHHHHhCCEEEEechhhCCCCCCEEEE
Confidence 44455555443 111 22333 4455666654221 1445676655 569999875 256999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 412 SPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 412 ~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+ +..++++|++++++|++++++.
T Consensus 363 s--~~~~~e~l~~al~rL~~~l~e~ 385 (388)
T d1gdea_ 363 S--YATAYEKLEEAMDRMERVLKER 385 (388)
T ss_dssp E--CCSCHHHHHHHHHHHHHHHHHT
T ss_pred E--ecCCHHHHHHHHHHHHHHHHhc
Confidence 9 6689999999999999999874
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=1.6e-24 Score=204.55 Aligned_cols=338 Identities=12% Similarity=0.001 Sum_probs=205.1
Q ss_pred EEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHH
Q 013204 35 YLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKL 114 (447)
Q Consensus 35 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~ 114 (447)
.+||.+-+.+.+ +|++++||.++.. +... .++.+...+|++++++++ +.++++|++||++||+.||+.
T Consensus 1 ~~~~~~~~~t~p----~p~v~~A~~~a~~-g~~~----yg~~p~~~~le~~lA~~~---G~~~~~~~~sGt~A~~~al~a 68 (343)
T d1m6sa_ 1 MIDLRSDTVTKP----TEEMRKAMAQAEV-GDDV----YGEDPTINELERLAAETF---GKEAALFVPSGTMGNQVSIMA 68 (343)
T ss_dssp CEECSCGGGCCC----CHHHHHHHHTCCC-CCGG----GTCCHHHHHHHHHHHHHT---TCSEEEEESCHHHHHHHHHHH
T ss_pred CcccccccCCCC----CHHHHHHHHhhhc-CCcc----cCCCHHHHHHHHHHHHHH---CCCeEEEeCCHHHHHHHHHHH
Confidence 378988776655 7999999876542 1111 235678899999999997 567899999999999999998
Q ss_pred HHHHHHhcCCCCcceEEEEcCCCccchhhhhcccC-CccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHH
Q 013204 115 VWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSG-LPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNL 193 (447)
Q Consensus 115 ~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 193 (447)
++ ...+.++...+.++........... ...+ ..++.... ..+.+.+
T Consensus 69 ~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~--------------~~~~~~~ 115 (343)
T d1m6sa_ 69 HT--------QRGDEVILEADSHIFWYEVGAMAVLSGVMP-----------HPVPGKNG--------------AMDPDDV 115 (343)
T ss_dssp HC--------CTTCEEEEETTCHHHHSSTTHHHHHTCCEE-----------EEECEETT--------------EECHHHH
T ss_pred Hh--------ccCCceeccccccceeeeccccccccccee-----------eccccccC--------------ccCHHHH
Confidence 74 2345666655554333211111110 0100 01110000 0002445
Q ss_pred HHHHHhhC--CCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeee
Q 013204 194 EDLILKEG--PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF 271 (447)
Q Consensus 194 e~~l~~~~--~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~ 271 (447)
++.+.... ...+..+++++..++.|..+++.+.+++|+++|++||+++++|+++.++......+.........+..++
T Consensus 116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (343)
T d1m6sa_ 116 RKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMF 195 (343)
T ss_dssp HHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEE
T ss_pred HHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccchhhhccccccccc
Confidence 55543221 2345666777766666667788999999999999999999999999865333222222222223555666
Q ss_pred cccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc
Q 013204 272 AKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF 351 (447)
Q Consensus 272 sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l 351 (447)
+|..+.++.+.++++..++.+....... . ..+.+.......+++ ................++..++.+.+.++
T Consensus 196 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~a~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (343)
T d1m6sa_ 196 CLSKGLCAPVGSVVVGDRDFIERARKAR----K-MLGGGMRQAGVLAAA--GIIALTKMVDRLKEDHENARFLALKLKEI 268 (343)
T ss_dssp ESSSTTCCSSCEEEEECHHHHHHHHHHH----H-HHTCCCSSTHHHHHH--HHHHHHHSSTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccHHHHhhhHhhC----c-ccccccchhHHHHHh--hhhhhhhhHHHHHHHHHHHHHhhhHHHHh
Confidence 6655544467788888888765554321 1 112233322222222 22222223344455556666666666665
Q ss_pred cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEEEecCCCCCHHHHHHHHHHHH
Q 013204 352 SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIMMSPPFIMSPEEVDELISKYG 430 (447)
Q Consensus 352 ~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR~~~~~~~t~e~i~~~~~~l~ 430 (447)
........ ....++.+.+..... ....+.+.|+++||++.+.+ +.+||++++.+|+||||+++++|+
T Consensus 269 ~~~~~~~~--~~~~~v~~~~~~~~~----------~a~~l~~~L~~~Gi~v~~~~~~~iRi~~~~~~t~edid~~v~~l~ 336 (343)
T d1m6sa_ 269 GYSVNPED--VKTNMVILRTDNLKV----------NAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFE 336 (343)
T ss_dssp TCBCCGGG--CCSSEEEEECTTSSS----------CHHHHHHHHHHHTEECEEEETTEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCccCCC--CCceEEEEEeCCCcc----------cHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 22221111 123445555543221 24568999999999998765 679999999999999999999999
Q ss_pred HHHHHH
Q 013204 431 KALKAT 436 (447)
Q Consensus 431 ~~l~~~ 436 (447)
++++++
T Consensus 337 ~v~~~~ 342 (343)
T d1m6sa_ 337 KLFRKF 342 (343)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999885
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.91 E-value=1.7e-22 Score=192.23 Aligned_cols=324 Identities=14% Similarity=0.136 Sum_probs=203.2
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDT 110 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~ 110 (447)
...++|||++|. +++| .+|.+++++.+.+.....| +.....+|.+.+++.+ ..+.++|++++|+.+++..
T Consensus 20 ~p~~~idls~~~--np~~-~p~~~~~a~~~~~~~~~~Y------p~~~~~~Lr~aia~~~-~v~~~~I~~~~g~~~~~~~ 89 (355)
T d1lc5a_ 20 SPDQLLDFSANI--NPLG-MPVSVKRALIDNLDCIERY------PDADYFHLHQALARHH-QVPASWILAGNGETESIFT 89 (355)
T ss_dssp CGGGSEECSSCC--CTTC-CCHHHHHHHHHTGGGGGSC------CCTTCHHHHHHHHHHH-TSCGGGEEEESSHHHHHHH
T ss_pred ChhheEEccCCC--CCCC-CCHHHHHHHHHHHHHhccC------CCCChHHHHHHHHHHh-CCCHHHEEecccHHHHHHH
Confidence 344689998764 7788 5789999999887664322 2223357888888887 4567789999988888877
Q ss_pred HHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHH
Q 013204 111 QVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190 (447)
Q Consensus 111 Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (447)
++... .+ +.+++..+.|+.+.......... . ..++++....+...
T Consensus 90 ~~~~~---------~~-~~~~v~~p~~~~~~~~~~~~~~~-~------------~~v~~~~~~~~~~~------------ 134 (355)
T d1lc5a_ 90 VASGL---------KP-RRAMIVTPGFAEYGRALAQSGCE-I------------RRWSLREADGWQLT------------ 134 (355)
T ss_dssp HHHHH---------CC-SEEEEEESCCTHHHHHHHHTTCE-E------------EEEECCGGGTTCCC------------
T ss_pred HHhhh---------cc-ccccccCCccceecccccccccc-c------------eeeeeeccCCccce------------
Confidence 66654 23 45566678887664333332221 1 11121111111110
Q ss_pred HHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee-
Q 013204 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV- 269 (447)
Q Consensus 191 ~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v- 269 (447)
+++++. ..++...+++++|.|+ +| ...+.+.+++|.++|++|++++|.||+|..|...+...... ....+.++
T Consensus 135 ~~~~~~---~~~~~~~v~l~nP~NP-tG-~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~-~~~~~~~i~ 208 (355)
T d1lc5a_ 135 DAILEA---LTPDLDCLFLCTPNNP-TG-LLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPA-LKDNPHIWV 208 (355)
T ss_dssp TTHHHH---CCTTCCEEEEESSCTT-TC-CCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGG-CTTCTTEEE
T ss_pred eeeeec---cccccceeeeecccCc-cc-ccchhhhhhhhhhhccccccccccccceeeeeeeccccccc-cccccccee
Confidence 122222 2234445556666445 44 45688999999999999999999999998775544332211 12223333
Q ss_pred --eecccCCCcccceeEEEeChh-HHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHH
Q 013204 270 --SFAKALSSAYMPIGAILVSPE-VSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVEQVNKIAPKFQ 345 (447)
Q Consensus 270 --~~sK~l~gg~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~~~~~~~~~l~ 345 (447)
++||.++.+++++|+++++++ +.+.+.. ...++..+.+++.++.++++... -.+.++.+++..+++.
T Consensus 209 ~~S~SK~~~l~GlR~G~~i~~~~~~~~~~~~---------~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 279 (355)
T d1lc5a_ 209 LRSLTKFYAIPGLRLGYLVNSDDAAMARMRR---------QQMPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFY 279 (355)
T ss_dssp EEESTTTTTCTTTCCEEEECCCHHHHHHHHH---------HSCTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccccccccccccceeccchhhhHHHHh---------hcCCccccccccccccccccccchhHHHHHHHHHHHHHHH
Confidence 689998844499999999766 4454432 12356667888888877775211 1223445555555666
Q ss_pred HhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-------CEEEEecCCCCC
Q 013204 346 DGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-------DNIMMSPPFIMS 418 (447)
Q Consensus 346 ~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-------~~iR~~~~~~~t 418 (447)
+.|.++ +.....++.|.++.+.+..+. ..+.++|+++||+++++. +.+||+. .+
T Consensus 280 ~~l~~~---~~~~~~p~~~~f~~~~~~~~~-------------~~~~~~L~~~gv~vr~~~~f~~~~~~~iRis~---~~ 340 (355)
T d1lc5a_ 280 QALCQL---PLLTVYPGRANYLLLRCERED-------------IDLQRRLLTQRILIRSCANYPGLDSRYYRVAI---RS 340 (355)
T ss_dssp HHHHTS---TTEEECCCSSSEEEEEESCTT-------------CCHHHHHHTTTEECEECTTSTTCCTTEEEEEC---CC
T ss_pred HHHhhc---CCcEECCCCCEEEEEECCCCH-------------HHHHHHHHHCCcEEEeCccCCCCCCCEEEEEe---CC
Confidence 666554 334334555677777765421 127788999999998752 5799993 48
Q ss_pred HHHHHHHHHHHHHHH
Q 013204 419 PEEVDELISKYGKAL 433 (447)
Q Consensus 419 ~e~i~~~~~~l~~~l 433 (447)
++++++++++|+++|
T Consensus 341 ~~e~~~li~aL~~il 355 (355)
T d1lc5a_ 341 AAQNERLLAALRNVL 355 (355)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998864
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.91 E-value=7.7e-23 Score=197.41 Aligned_cols=350 Identities=12% Similarity=0.081 Sum_probs=212.1
Q ss_pred CCCCEEEecCCccccc-cCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhH
Q 013204 30 VNGKKYLDSLAGLWCT-ALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEA 107 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~-~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA 107 (447)
.+|+++|++..|.... .|. .++.+++++.+++++....|+...+..+....+++.+.+.+. ....+++++++|+.++
T Consensus 27 ~~G~~vi~l~~G~P~~~df~-~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~ 105 (395)
T d1xi9a_ 27 KKGIKVIRLNIGDPVKFDFQ-PPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEA 105 (395)
T ss_dssp HTTCCCEECCCCCGGGTTCC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred HCCCCeEECCCCCCCCCCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhhhhcccccccccccccccccchh
Confidence 4688999998764221 233 567899999999977544343334445555666666666543 2467899999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 108 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 108 ~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
+..+++... ..++.|++.+|+|+.+.......+......... ..+.|.
T Consensus 106 ~~~~~~~~~--------~~Gd~vlv~~P~y~~~~~~~~~~g~~~v~v~~~-----------~~~~~~------------- 153 (395)
T d1xi9a_ 106 LQLIFGALL--------DPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTI-----------EEEDWQ------------- 153 (395)
T ss_dssp HHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEE-----------GGGTSE-------------
T ss_pred hhhhhhhhc--------CCCCEEEEcCCccccchhhhhhcCCEEEEEecc-----------cccccc-------------
Confidence 999888763 335789999999988765555444322111000 000000
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCC
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPD 267 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d 267 (447)
.+++++++.+ .++...++++.|.|++| ...+.+.+++|.++|++|++++|.||+|..+...+.........-...
T Consensus 154 ~d~~~~~~~~---~~~~~~v~l~~P~NPTG--~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~ 228 (395)
T d1xi9a_ 154 PDIDDIRKKI---TDRTKAIAVINPNNPTG--ALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVP 228 (395)
T ss_dssp ECHHHHHHHC---CTTEEEEEEESSCTTTC--CCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSC
T ss_pred chHHHHHHhh---cccccEEEecCCCCCcc--chhhHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcCCCCC
Confidence 0024454443 24455667777766665 566889999999999999999999999987644443222111111122
Q ss_pred ee---eecccCCCcccceeEEEeC--hhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHHHH
Q 013204 268 LV---SFAKALSSAYMPIGAILVS--PEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQVNKI 340 (447)
Q Consensus 268 ~v---~~sK~l~gg~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~~~ 340 (447)
++ +|||.++..++++|+++.. ...+..+.... ......+++.+.+++.++..+++... -.+..+.++++
T Consensus 229 vi~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~ 304 (395)
T d1xi9a_ 229 VIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAI----DRLARIRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKER 304 (395)
T ss_dssp EEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHH----HHHHHHTCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred EEEEeCcchhcccchhhcEeeEecCHHHHHHHHHHHH----HHhhcCCCCcCHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 33 6899988655999987642 22222221100 00111234445556666665554211 12234555666
Q ss_pred HHHHHHhHhhccCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHH-HHHcCceEEeeC-------CEEEE
Q 013204 341 APKFQDGVKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQ-CEKHGMLVRVSG-------DNIMM 411 (447)
Q Consensus 341 ~~~l~~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~Gi~~~~~g-------~~iR~ 411 (447)
.+.+.+.|+++ +......+. |.++++++....... ...+..+ +.+.||++.|+. +.+||
T Consensus 305 ~~~l~~~L~~~---~~~~~~~p~gg~~~~~~l~~~~~~~---------~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ri 372 (395)
T d1xi9a_ 305 RDYIYKRLNEI---PGISTTKPQGAFYIFPKIEVGPWKN---------DKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRA 372 (395)
T ss_dssp HHHHHHHHHTS---TTEECCCCCBSSEECCEECSCSCSS---------HHHHHHHHHHHHCEECEEGGGGCGGGTTBEEE
T ss_pred HHHHHHHHHhC---CCceecCCCeeEEEeEECCCCCCCC---------HHHHHHHHHHhCCEEEEcChhhCCCCCCEEEE
Confidence 66676666654 433334444 455666765432111 2345555 456799998752 46999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 412 SPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 412 ~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+ +..++|++++++++|.+++++
T Consensus 373 s--~~~~~e~l~eal~rl~~~l~e 394 (395)
T d1xi9a_ 373 V--FLPPIEILEEAMDRFEKFMKE 394 (395)
T ss_dssp E--CCSCHHHHHHHHHHHHHHHHH
T ss_pred E--ecCCHHHHHHHHHHHHHHHhc
Confidence 9 678999999999999999875
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.90 E-value=5.4e-22 Score=191.45 Aligned_cols=347 Identities=12% Similarity=0.056 Sum_probs=204.5
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhHH
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEAN 108 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA~ 108 (447)
..|++++||..+.. -|. .+|+|++|+.+++++..+.|+ .+..+....+++.+.+.+. ...+++|++++|+++|+
T Consensus 28 ~~g~~vi~l~~g~p--df~-~p~~v~~al~~~~~~~~~~Y~--~g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al 102 (394)
T d1c7na_ 28 EVGNEVVPLSVADM--EFK-NPPELIEGLKKYLDETVLGYT--GPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAV 102 (394)
T ss_dssp TCCTTCCCCCSSSC--SSC-CCHHHHHHHHHHHHHCCCSSB--CCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHH
T ss_pred hcCCCeEEccCCCC--CCC-CCHHHHHHHHHHHhCCCcCCC--CCCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhh
Confidence 35778888865532 233 589999999999987544332 2233344455555554432 24678999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHH
Q 013204 109 DTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188 (447)
Q Consensus 109 ~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (447)
..+++... ..++.|++.++.|...........+......... ....+. .
T Consensus 103 ~~~~~~~~--------~pgd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~----------~~~~~~-----~-------- 151 (394)
T d1c7na_ 103 FNAVREFT--------KPGDGVIIITPVYYPFFMAIKNQERKIIECELLE----------KDGYYT-----I-------- 151 (394)
T ss_dssp HHHHHHHC--------CTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEE----------ETTEEE-----C--------
T ss_pred hhhhcccc--------ccccccccccCcccchhhHHhhhhhccccccccc----------cccccc-----c--------
Confidence 99998763 3457899999999887655544343221110000 000000 0
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccccc-cc--CCCC
Q 013204 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGC-DK--YSIK 265 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~-~~--~~~~ 265 (447)
+.+.++.... .++....++++|.|++| .+.+.+.+++|+++|++|++++|.||+|..+-..+..... .. .+..
T Consensus 152 d~~~~~~~~~--~~~~~~i~l~~P~NPTG--~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~ 227 (394)
T d1c7na_ 152 DFQKLEKLSK--DKNNKALLFCSPHNPVG--RVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLA 227 (394)
T ss_dssp CHHHHHHHHT--CTTEEEEEEESSBTTTT--BCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHH
T ss_pred hhhhhhhhhc--cccceEEEecccccccc--eeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccc
Confidence 0144444443 22334556666666665 5678899999999999999999999999987554432211 11 1111
Q ss_pred CC---eeeecccCCCcccceeEEEeCh-hHHHHhhhccCCCCccCcCCCC-CCcHHHHHHHHHHHHHHh--hhcHHHHHH
Q 013204 266 PD---LVSFAKALSSAYMPIGAILVSP-EVSEVIHSQSNTLGSFSHGFTY-SGHPVSCAVAIEALKIYK--ERNIVEQVN 338 (447)
Q Consensus 266 ~d---~v~~sK~l~gg~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~t~-~~~~~~~~aa~a~l~~~~--~~~~~~~~~ 338 (447)
.. +.++||.++.+++++|++++++ .+.+.+... ....+. .......+++........ .++.....+
T Consensus 228 ~~~i~~~s~SK~~~~~G~R~g~~~~~~~~i~~~~~~~-------~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 300 (394)
T d1c7na_ 228 DKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKS-------RDATSGMPFTTLGYKACEICYKECGKWLDGCIKVID 300 (394)
T ss_dssp TTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHH-------HHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred cceeecccccccccccccccccccccChhhhhhhhhh-------hhhccccccccccchhhhhhhcchhhhhcccccccc
Confidence 12 2257898775449999988765 555655421 111112 222333333333222111 123344445
Q ss_pred HHHHHHHHhHhhccCCCceeeEeeee-eEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc-CceEEeeC-------CEE
Q 013204 339 KIAPKFQDGVKAFSDSPIIGEIRGTG-LILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH-GMLVRVSG-------DNI 409 (447)
Q Consensus 339 ~~~~~l~~~L~~l~~~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~g-------~~i 409 (447)
++.+.+++.++.. .+.+....+.| .++.+++..... ....+.++|+++ ||++.|+. +.+
T Consensus 301 ~~~~~~~~~l~~~--~~~~~~~~p~g~~~~~~~~~~~~~----------~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~i 368 (394)
T d1c7na_ 301 KNQRIVKDFFEVN--HPEIKAPLIEGTYLQWIDFRALKM----------DHKAMEEFMIHKAQIFFDEGYIFGDGGIGFE 368 (394)
T ss_dssp HHHHHHHHHHHHH--CTTSBCCCCSBSSEEEEECGGGCC----------CHHHHHHHHHHTTCCCCEEGGGGCGGGTTEE
T ss_pred hhhhhhhhhhhcc--ccceeecCCCceeEEEEECCCCCC----------CHHHHHHHHHHhCCEEEEcchhhCCCCCCEE
Confidence 5555555555432 11122233344 455667654221 145678887765 99998751 569
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 410 MMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 410 R~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
||+ +..++|+|++++++|+++++++|
T Consensus 369 Ris--~~~~~e~i~eal~rl~~~l~~Lk 394 (394)
T d1c7na_ 369 RIN--LAAPSSVIQESLERLNKALKDLK 394 (394)
T ss_dssp EEE--CCSCHHHHHHHHHHHHHHHHHHC
T ss_pred EEE--EeCCHHHHHHHHHHHHHHHHhcC
Confidence 999 67789999999999999998874
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=1.7e-21 Score=185.66 Aligned_cols=330 Identities=10% Similarity=0.006 Sum_probs=192.8
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcc
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKK 128 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~ 128 (447)
.+|.|.+|+.++++...+.|+...+ .+....+++.+.+.+. +.++++|++++|+++++..++.... ..++
T Consensus 13 ~p~~i~eal~~~~~~~~~~Y~~~~g-~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~--------~~gd 83 (361)
T d1d2fa_ 13 TAPCIIEALNQRLMHGVFGYSRWKN-DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS--------ETGE 83 (361)
T ss_dssp CCHHHHHHHHHHHTTCCCCCCCSCC-HHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS--------CTTC
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCC-HHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhcc--------cccc
Confidence 5799999999998765443433333 3455556666666543 3467899999999999999888763 3357
Q ss_pred eEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEE-E
Q 013204 129 KFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIA-A 207 (447)
Q Consensus 129 ~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a-~ 207 (447)
+|++.+|+|..+....... +.....-..... .+.+. . +++.+++.+.. .+++ +
T Consensus 84 ~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~---------~~~~~-----~--------d~~~~~~~~~~---~~~~~i 137 (361)
T d1d2fa_ 84 GVVIHTPAYDAFYKAIEGN-QRTVMPVALEKQ---------ADGWF-----C--------DMGKLEAVLAK---PECKIM 137 (361)
T ss_dssp EEEEEESCCHHHHHHHHHT-TCEEEEEECEEC---------SSSEE-----C--------CHHHHHHHHTS---TTEEEE
T ss_pred ccccccccccchhHHHHhh-cceEEeeccccc---------ccccc-----c--------ccccchhhccc---CCceeE
Confidence 8999999997775433332 221110000000 00000 0 02556665542 3444 4
Q ss_pred EEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCC-CCee---eecccCCCccccee
Q 013204 208 FIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIK-PDLV---SFAKALSSAYMPIG 283 (447)
Q Consensus 208 vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~-~d~v---~~sK~l~gg~~~~g 283 (447)
++..|.|++ | ...+.+.+++|.++|+++|+++|.||+|.++...+..... ..... .+.+ ++||.++.+++++|
T Consensus 138 ~l~~p~NPT-G-~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~-~~~~~~~~~v~~~s~SK~~~~~g~R~g 214 (361)
T d1d2fa_ 138 LLCSPQNPT-G-KVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIP-WSNVARGDWALLTSGSKSFNIPALTGA 214 (361)
T ss_dssp EEESSCTTT-C-CCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCC-GGGTCCSSEEEEECSHHHHTCGGGCCE
T ss_pred Eeccccccc-c-cccchhhhhhhhhhhhhhheeeeecccccccccccccccc-cccccccccccccccccccccccccce
Confidence 555554554 4 4567889999999999999999999999987444432211 11122 2333 46887765448999
Q ss_pred EEEeCh-hHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHHHHHHHHHHhHhhc-cCCCceee
Q 013204 284 AILVSP-EVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQVNKIAPKFQDGVKAF-SDSPIIGE 359 (447)
Q Consensus 284 ~~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~ 359 (447)
+++... ...+..... ........+++..++.+++.+++... .+.....++++.+.+.+.+.+. .. +..
T Consensus 215 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~---~~~ 286 (361)
T d1d2fa_ 215 YGIIENSSSRDAYLSA-----LKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPE---LNW 286 (361)
T ss_dssp EEEECSHHHHHHHHHH-----HHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSS---CCC
T ss_pred eeecchhHHHHHHhhh-----cccccccccchhhhHHHHHHHhhccchhhhcccccchhhHHHHHHHhhhhccc---ccc
Confidence 987653 333322210 00111222344455555554444221 1223344445555555555443 22 112
Q ss_pred Eeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc-CceEEeeC-------CEEEEecCCCCCHHHHHHHHHHHH
Q 013204 360 IRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH-GMLVRVSG-------DNIMMSPPFIMSPEEVDELISKYG 430 (447)
Q Consensus 360 ~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~g-------~~iR~~~~~~~t~e~i~~~~~~l~ 430 (447)
..+. |.++.+++..... ....+..+|+++ ||++.|+. +.+|++ +..++++|++++++|.
T Consensus 287 ~~p~gg~~~~~~l~~~~~----------~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis--~~~~~e~l~~al~rl~ 354 (361)
T d1d2fa_ 287 QIPQSTYLAWLDLRPLNI----------DDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLN--AGCPRSKLEKGVAGLI 354 (361)
T ss_dssp CCCSBCSEEEEECGGGCC----------CHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHH
T ss_pred cccCceeEEEEEccCCCC----------CHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEE--EcCCHHHHHHHHHHHH
Confidence 2233 4455666643221 145677777665 99998751 469999 5678999999999999
Q ss_pred HHHHHHH
Q 013204 431 KALKATE 437 (447)
Q Consensus 431 ~~l~~~~ 437 (447)
++++++|
T Consensus 355 ~~l~~lr 361 (361)
T d1d2fa_ 355 NAIRAVR 361 (361)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9998874
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.90 E-value=2.9e-22 Score=191.62 Aligned_cols=326 Identities=17% Similarity=0.145 Sum_probs=203.4
Q ss_pred EEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHH
Q 013204 35 YLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKL 114 (447)
Q Consensus 35 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~ 114 (447)
.||++.|.. .+. .+|.+++|+.+.++....| + +.....+|.+.+++++ ..+.++|++++|+++|+..+++.
T Consensus 27 ~I~ls~g~p--~~~-~p~~i~~al~~~l~~~~~Y-~----~~~G~~elr~aiA~~~-~~~~~~Iiit~G~~~al~~~~~~ 97 (368)
T d1v2da_ 27 AVNLGQGFP--SNP-PPPFLLEAVRRALGRQDQY-A----PPAGLPALREALAEEF-AVEPESVVVTSGATEALYVLLQS 97 (368)
T ss_dssp CEECCCCSC--SSC-CCHHHHHHHHHHTTTSCSC-C----CTTCCHHHHHHHHHHH-TSCGGGEEEESSHHHHHHHHHHH
T ss_pred CEEecCCCC--CCC-CCHHHHHHHHHHhhcccCC-C----CCcCCHHHHHHHHhhc-ccCCcceeeccchHHHHHHHhhc
Confidence 578866632 122 5789999999988654222 1 2223457778888887 35778999999999999999987
Q ss_pred HHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHH
Q 013204 115 VWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLE 194 (447)
Q Consensus 115 ~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le 194 (447)
.. ...+.|++.+|.|+................ ...... +.+. .+.+.++
T Consensus 98 l~--------~~~d~v~~~~p~~~~~~~~~~~~g~~~~~~-~~~~~~---------~~~~-------------~d~~~l~ 146 (368)
T d1v2da_ 98 LV--------GPGDEVVVLEPFFDVYLPDAFLAGAKARLV-RLDLTP---------EGFR-------------LDLSALE 146 (368)
T ss_dssp HC--------CTTCEEEEEESCCTTHHHHHHHTTCEEEEE-ECEEET---------TEEE-------------CCHHHHH
T ss_pred cc--------cccccccccCCcchhhhhHHHhcCCcccee-cccccc---------cccc-------------CCHHHHH
Confidence 63 345789999999987754444332211110 000000 0000 0025555
Q ss_pred HHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCC--CCeeeec
Q 013204 195 DLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIK--PDLVSFA 272 (447)
Q Consensus 195 ~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~--~d~v~~s 272 (447)
+.+. +.....+++.|.|++| ...+.+.+++|.++|++||+++|.||++..+............... ..+.++|
T Consensus 147 ~~~~---~~~~~i~~~~p~NPtG--~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 221 (368)
T d1v2da_ 147 KALT---PRTRALLLNTPMNPTG--LVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAG 221 (368)
T ss_dssp TTCC---TTEEEEEEESSCTTTC--CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHH
T ss_pred Hhhc---cCceEEEEcCCCCccc--ccCCHHHHHHHHHHHHHcCCeeeechhhhhhcccccccccccccccccceeeccc
Confidence 5443 3444566666655555 5668899999999999999999999999754332221111111111 1234678
Q ss_pred ccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhc----HHHHHHHHHHHHHHhH
Q 013204 273 KALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERN----IVEQVNKIAPKFQDGV 348 (447)
Q Consensus 273 K~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~----~~~~~~~~~~~l~~~L 348 (447)
|.++.+++++|+++.++++++.+... ....+.+.+.+.+.++.+++......+ ..+.++++.+++.+.|
T Consensus 222 k~~~~~G~R~g~~~~~~~~~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l 294 (368)
T d1v2da_ 222 KRLEATGYRVGWIVGPKEFMPRLAGM-------RQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGL 294 (368)
T ss_dssp HHTTCGGGCCEEEECCTTTHHHHHHH-------HHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhhh-------hhccccccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhH
Confidence 87766559999999999988776532 222345556666666666665443333 3344555666666777
Q ss_pred hhccCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee---------CCEEEEecCCCCC
Q 013204 349 KAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS---------GDNIMMSPPFIMS 418 (447)
Q Consensus 349 ~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---------g~~iR~~~~~~~t 418 (447)
+++ ++ ....+. |.++.+++.... ..+.+.++||++.|+ .+.+|++ +..+
T Consensus 295 ~~~---g~-~~~~p~g~~~~~~~l~~~~---------------~~~ll~~~gI~v~pg~~F~~~~~~~~~iRis--~~~~ 353 (368)
T d1v2da_ 295 RAM---GL-RVYVPEGTYFLMAELPGWD---------------AFRLVEEARVALIPASAFYLEDPPKDLFRFA--FCKT 353 (368)
T ss_dssp HHT---TC-CEECCSBSSEEEEECTTCC---------------HHHHHHHTCEECEEGGGGCSSSCCTTEEEEE--CCSC
T ss_pred Hhc---Cc-EEecCCceeEEEEeCCccH---------------HHHHHHhCCEEEEechhhCCCCCCCCEEEEE--ecCC
Confidence 665 22 223344 455666654321 335577899999874 1569999 6689
Q ss_pred HHHHHHHHHHHHHHH
Q 013204 419 PEEVDELISKYGKAL 433 (447)
Q Consensus 419 ~e~i~~~~~~l~~~l 433 (447)
+|+|++++++|++++
T Consensus 354 ~e~i~~ai~rL~~~l 368 (368)
T d1v2da_ 354 EEELHLALERLGRVV 368 (368)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999999864
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=3.2e-22 Score=191.81 Aligned_cols=337 Identities=15% Similarity=0.107 Sum_probs=207.4
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhHHH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEAND 109 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA~~ 109 (447)
.|+++||++.|.. .+. .++.+++++.+.+.+....|+...+..+....+++.+.+... ....+++++++|+++|+.
T Consensus 26 ~G~~vI~l~~G~p--~~~-~p~~i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~ 102 (375)
T d1o4sa_ 26 KGEDVINLTAGEP--DFP-TPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALF 102 (375)
T ss_dssp TTCCCEECCCSSC--SSC-CCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHH
T ss_pred CCCCeEECCCcCC--CCC-CCHHHHHHHHHHHhcCCcCCCCCcCCHHHHHHHHhhhhhccccccccccccccCcHHHHHH
Confidence 4788999987743 243 578999999998876544444334455555566666655443 356789999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (447)
.+++... ..++.|++.+|.|..+............ . .+......+. .+
T Consensus 103 ~~~~~l~--------~~gd~vlv~~P~y~~~~~~~~~~~~~~~-~------------~~~~~~~~~~---~~-------- 150 (375)
T d1o4sa_ 103 NAFMALL--------DPGDEVIVFSPVWVSYIPQIILAGGTVN-V------------VETFMSKNFQ---PS-------- 150 (375)
T ss_dssp HHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTCEEE-E------------EECCGGGTTC---CC--------
T ss_pred HHHHHHh--------CCCCEEEEccCccccchhhhhccccccc-c------------cccccccccc---ch--------
Confidence 9998763 3357899999999877544433222111 0 0110000000 00
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccc-cccCCCCCC-
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFG-CDKYSIKPD- 267 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~-~~~~~~~~d- 267 (447)
.+.++. ...+.....++++|.|++| ...+.+.+++|.++|++|+++||.||+|..+...+.... ....+....
T Consensus 151 ~~~~~~---~~~~~~~~~~l~nP~NPTG--~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~ 225 (375)
T d1o4sa_ 151 LEEVEG---LLVGKTKAVLINSPNNPTG--VVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRI 225 (375)
T ss_dssp HHHHHH---TCCTTEEEEEEESSCTTTC--CCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTE
T ss_pred hHHHHH---hhccCccEEEEeCCCCCcc--CCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCE
Confidence 122222 2223444566666655554 456889999999999999999999999986644332221 111222222
Q ss_pred --eeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 013204 268 --LVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQ 345 (447)
Q Consensus 268 --~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~ 345 (447)
+-++||.++.+++++|+++++++.++.+... ....+..........+...++.. .....+.++++.+.+.
T Consensus 226 i~~~S~SK~~~l~G~R~G~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~ 297 (375)
T d1o4sa_ 226 VYINGFSKSHSMTGWRVGYLISSEKVATAVSKI-------QSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVV 297 (375)
T ss_dssp EEEEESTTTTTCGGGCCEEEECCHHHHHHHHHH-------HHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHH
T ss_pred EEEeechhhccCCccccccccccccchhhhhhh-------hccccccccccchhhhhhhcccc-hhhhHHHHHHHHHHHH
Confidence 2368999885449999999999988777532 11122233333333333322211 1234566667777777
Q ss_pred HhHhhccCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHH-HHHcCceEEeeC-----CEEEEecCCCCC
Q 013204 346 DGVKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQ-CEKHGMLVRVSG-----DNIMMSPPFIMS 418 (447)
Q Consensus 346 ~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~Gi~~~~~g-----~~iR~~~~~~~t 418 (447)
+.|+++ +.. ...+. |.++.+.+..+ ...+..+ +.++||++.|+. +.+||+ +..+
T Consensus 298 ~~l~~~-g~~---~~~p~gg~f~~~~~~~~-------------~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis--~~~~ 358 (375)
T d1o4sa_ 298 ERLKKM-GVK---FVEPEGAFYLFFKVRGD-------------DVKFCERLLEEKKVALVPGSAFLKPGFVRLS--FATS 358 (375)
T ss_dssp HHHHHT-TCC---CCCCSBSSEEEEECSSC-------------HHHHHHHHHHHHCEECEEGGGGTCTTEEEEE--CCSC
T ss_pred HHHHhc-Cce---EecCCccEEEEEECCCC-------------HHHHHHHHHHhCCEEEEEccccCCCCeEEEE--EcCC
Confidence 777765 211 22334 45566666532 2234555 556799999863 579999 6679
Q ss_pred HHHHHHHHHHHHHHHH
Q 013204 419 PEEVDELISKYGKALK 434 (447)
Q Consensus 419 ~e~i~~~~~~l~~~l~ 434 (447)
+++|++++++|+++++
T Consensus 359 ~e~l~~al~rl~~~l~ 374 (375)
T d1o4sa_ 359 IERLTEALDRIEDFLN 374 (375)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999875
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.90 E-value=1.2e-21 Score=189.71 Aligned_cols=355 Identities=11% Similarity=0.120 Sum_probs=205.5
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCC---cccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhh
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP---FYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSE 106 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGse 106 (447)
++.+++||..|...-. -...+.+.+++.+.++... ..|+...+..+....+++.+.+.+. ..+.++|++++|+++
T Consensus 27 ~~~~~i~l~~G~P~~~-~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~ 105 (403)
T d1wsta1 27 ETSDVISLAGGLPAPE-TFPVETIKKIAVEVLEEHADKALQYGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQ 105 (403)
T ss_dssp TSSSCEECCCCCCCGG-GSCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHH
T ss_pred CCCCcEECCCCCCCcc-ccCHHHHHHHHHHHHHhCcccccCCCCCcCCHHHHHHHHHHHHHHhCCCCChHHeeecccchH
Confidence 4456788765532110 0112356666666654321 1122223344455556666655543 257789999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHH
Q 013204 107 ANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYS 186 (447)
Q Consensus 107 A~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (447)
++..+++... ..++.|++.+|+|..+........... ..++.... .....
T Consensus 106 al~~~~~~l~--------~~gd~v~~~~P~y~~~~~~~~~~g~~~-------------~~v~~~~~------~~~~~--- 155 (403)
T d1wsta1 106 ALDLIGRVFL--------NPGDPIVVEAPTYLAAIQAFKYYDPEF-------------ISIPLDDK------GMRVD--- 155 (403)
T ss_dssp HHHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHTTCCEE-------------EEEEEETT------EECHH---
T ss_pred HHHHHHHHHh--------hcCCccccCCCcchhhhHHHhhccccc-------------eeEeeccc------CCccc---
Confidence 9999998763 345789999999988765444332211 01111000 00000
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccc-cccCC--
Q 013204 187 TRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFG-CDKYS-- 263 (447)
Q Consensus 187 ~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~-~~~~~-- 263 (447)
......++......+ ...++++.+.++.+| ...+.+.+++|.++|++|+++||.||+|..+...+.... ....+
T Consensus 156 -~~~~~~~~~~~~~~~-~~~~~~~~~p~NPtG-~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~ 232 (403)
T d1wsta1 156 -LLEEKLEELRKQGKR-VKIVYTVSTFQNPAG-VTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDY 232 (403)
T ss_dssp -HHHHHHHHHHHTTCC-CCEEEECCSSCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSS
T ss_pred -cccccchhhhhcccc-ccccccccccCCCCC-ccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCC
Confidence 111223333333333 344444444444444 566889999999999999999999999998866654332 11111
Q ss_pred -CCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh----hcHHHHHH
Q 013204 264 -IKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE----RNIVEQVN 338 (447)
Q Consensus 264 -~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~----~~~~~~~~ 338 (447)
...-+-++||.++.| +++|++++++++++.+... ....+...+...+.+..+.+..... ....+.+.
T Consensus 233 ~~~i~~~S~SK~~~~G-~RiG~~i~~~~~i~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (403)
T d1wsta1 233 GRVIYLGTFSKILAPG-FRIGWVAAHPHLIRKMEIA-------KQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYK 304 (403)
T ss_dssp SCEEEEEESTTTTCGG-GCCEEEEECHHHHHHHHHH-------HHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred CcEEEEccccceecCc-ccccccccchHHHHHHHHH-------HhhhccccccchhhhHHhhhhccccchhHHHHHHHHH
Confidence 111233679988655 8999999999988876531 1112334445554444333332111 22344445
Q ss_pred HHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC---------CEE
Q 013204 339 KIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG---------DNI 409 (447)
Q Consensus 339 ~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g---------~~i 409 (447)
.+.+.+.+.|++.....+....+.-|.++.+++++.... ..+.+.|+++||++.|+. +.+
T Consensus 305 ~~~~~~~~~L~~~~~~~~~~~~p~gg~~~~~~~~~~~~~-----------~~~~~~l~~~gV~v~pg~~f~~~~~~~~~i 373 (403)
T d1wsta1 305 PRRDAMLEALEEYMPEGVEWTKPEGGMFVRVTLPEGIDT-----------KLMMERAVAKGVAYVPGEAFFVHRDKKNTM 373 (403)
T ss_dssp HHHHHHHHHHHHHCCTTCEECCCSBSSEEEEECCTTCCT-----------TTTHHHHHHTTEECEEGGGGSTTCCCCSEE
T ss_pred HHHHHHHHHHHhhccCCeEEeCCCceeEEEEECCCCCCH-----------HHHHHHHHHCCEEEEechhhcCCCCCCCEE
Confidence 555555566655411122222233356677777653221 236788999999998751 469
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013204 410 MMSPPFIMSPEEVDELISKYGKALKATEER 439 (447)
Q Consensus 410 R~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 439 (447)
||+.. ..++++|++++++|++++++..++
T Consensus 374 Ri~~~-~~~~~~l~~al~rl~~~l~~~~k~ 402 (403)
T d1wsta1 374 RLNFT-YVPEETIREGVRRLAETIKEEMKR 402 (403)
T ss_dssp EEECS-SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEec-CCCHHHHHHHHHHHHHHHHHHHhc
Confidence 99943 268999999999999999875554
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.89 E-value=6.2e-21 Score=185.37 Aligned_cols=355 Identities=12% Similarity=0.033 Sum_probs=208.0
Q ss_pred EEecCCccccccCCCCCHHHHHHHHHHHhcCCc---ccccCcCCChHHHHHHHHHHHhcCc-CC-CCeEEEeCChhhHHH
Q 013204 35 YLDSLAGLWCTALGGSEPRLVAAATAQLNTLPF---YHSFWNRTTKPSLDLAKELLEMFTA-SK-MAKVFFTNSGSEAND 109 (447)
Q Consensus 35 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~-~~-~~~v~~~~sGseA~~ 109 (447)
.||+..|. +--..++.+++++.+++..... .|+...+..+....+++++.+.+.. .. .++|++++|+++|+.
T Consensus 28 ~I~L~~G~---Pd~~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~ 104 (418)
T d2r5ea1 28 PLNLGQGF---PDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALY 104 (418)
T ss_dssp CEECSSSC---CSSCCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred CEEccCCC---CCCCCCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhh
Confidence 47876663 2122467899999999875432 2332334445566677777666532 23 478999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (447)
.+++... ..++.|++.+|.|..+........+...... ........ ......+
T Consensus 105 ~~~~~l~--------~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~-~~~~~~~~--------------~~~~~~~---- 157 (418)
T d2r5ea1 105 ATIQGHV--------DEGDEVIIIEPFFDCYEPMVKAAGGIPRFIP-LKPNKTGG--------------TISSADW---- 157 (418)
T ss_dssp HHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTCEEEEEE-CEESCCSS--------------CEEGGGE----
T ss_pred hhhhhcc--------ccccceeccccccchhhHHHHHcCCeEEEEE-eccccccc--------------chhhhhh----
Confidence 9999774 4468899999999988655555443321100 00000000 0000000
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc--ccccCCCCCC
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF--GCDKYSIKPD 267 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~--~~~~~~~~~d 267 (447)
..+++++..... ..++++++.+.++.+| ...+.+.+++|.++|++||+++|.||+|..+...+... .....+....
T Consensus 158 ~~~~~~~~~~~~-~~~~~~~i~~p~NPtG-~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~ 235 (418)
T d2r5ea1 158 VLDNNELEALFN-EKTKMIIINTPHNPLG-KVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWER 235 (418)
T ss_dssp ECCHHHHHHHCC-TTEEEEEEESSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGG
T ss_pred hhhHHHHhhhhh-ccccceecCCcCcccc-ccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccce
Confidence 011222222222 3444454444444444 45688999999999999999999999998774444321 1122222222
Q ss_pred ee---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-----hh----cHHH
Q 013204 268 LV---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-----ER----NIVE 335 (447)
Q Consensus 268 ~v---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-----~~----~~~~ 335 (447)
++ ++||.++.+++++|++++++++++.+... ....+++.+...+.++.+.+.... .+ +..+
T Consensus 236 ~i~~~S~SK~~~~pGlRiG~~~~~~~~i~~~~~~-------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~ 308 (418)
T d2r5ea1 236 TITIGSAGKTFSLTGWKIGWAYGPEALLKNLQMV-------HQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISG 308 (418)
T ss_dssp EEEEEEHHHHTTCGGGCCEEEESCHHHHHHHHHH-------HTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHH
T ss_pred eeeeecCCccccCCCcccccccccchhhhhhhhc-------ccccccccccchhhhccccccccccccccchhhHHHHHH
Confidence 23 57898875449999999999998887632 122344445454544444443211 01 2344
Q ss_pred HHHHHHHHHHHhHhhccCCCceeeEeee-eeEEEEEeecCCCCCCCC-CCCcchHHHHHHHHHH-cCceEEeeC------
Q 013204 336 QVNKIAPKFQDGVKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPF-PPEWGIGAYFGAQCEK-HGMLVRVSG------ 406 (447)
Q Consensus 336 ~~~~~~~~l~~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~l~~-~Gi~~~~~g------ 406 (447)
.++.+++.+.+.|+++ ++ ....+. |.++.+++.......... .........|++.|++ .||.+.|+.
T Consensus 309 ~~~~~r~~l~~~L~~~---g~-~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~ 384 (418)
T d2r5ea1 309 ELMAKRDYMASFLAEV---GM-NPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEP 384 (418)
T ss_dssp HHHHHHHHHHHHHHHT---TC-EEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGG
T ss_pred HHHHhhhhHHhhHhhc---CC-cccCCCceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCC
Confidence 5555666666666664 33 233444 456677775432111100 0111234557777765 599998751
Q ss_pred ------CEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 407 ------DNIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 407 ------~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
+.+|++ +..++|+|++++++|++.+.
T Consensus 385 ~~~~g~~~iRis--~~~~~e~l~~a~~rl~~~lg 416 (418)
T d2r5ea1 385 NKHLGEDFVRYC--FFKKDENLQKAAEILRKWKG 416 (418)
T ss_dssp GHHHHTTEEEEE--CCSCHHHHHHHHHHHHHHHT
T ss_pred CccCCCCEEEEE--ecCCHHHHHHHHHHHHHHHc
Confidence 469999 67799999999999998763
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.89 E-value=4.6e-22 Score=187.27 Aligned_cols=326 Identities=14% Similarity=0.073 Sum_probs=183.7
Q ss_pred EEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHH
Q 013204 35 YLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKL 114 (447)
Q Consensus 35 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~ 114 (447)
+|||+|. |+.| .||+|++||.++..... ...+..+...++++++++++. ....++|++|||+||+.|++.
T Consensus 4 ~~~f~s~---n~~g-~~P~v~~A~~~a~~~~~----~~~~~~~~~~~l~~~la~~~g--~~~~v~f~~sGt~An~~a~~~ 73 (345)
T d1v72a1 4 ALGFSSD---NIAG-ASPEVAQALVKHSSGQA----GPYGTDELTAQVKRKFCEIFE--RDVEVFLVPTGTAANALCLSA 73 (345)
T ss_dssp CCBCSCG---GGCC-CCHHHHHHHHHTTSSCC----CSTTCSHHHHHHHHHHHHHHT--SCCEEEEESCHHHHHHHHHHT
T ss_pred CcCcCCC---CCCC-CCHHHHHHHHHHhccCc----cccCCCHHHHHHHHHHHHHHC--CCcEEEECCchHHHHHHHHHH
Confidence 6899876 4445 69999999988654311 112367788899999999983 234789999999999999997
Q ss_pred HHHHHHhcCCCCcceEEEEcCCCccchh---hhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHH
Q 013204 115 VWYYNNALGRPNKKKFIARQKSYHGSTL---IAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191 (447)
Q Consensus 115 ~~~~~~~~~~~~~~~vi~~~~~yhg~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (447)
++ .....++. ....|.+.. .....++... ..++.... ...+++
T Consensus 74 ~~--------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~-------------~~~~~~ 119 (345)
T d1v72a1 74 MT--------PPWGNIYC-HPASHINNDECGAPEFFSNGAK------------LMTVDGPA-------------AKLDIV 119 (345)
T ss_dssp SC--------CTTEEEEE-CTTSHHHHSSTTHHHHHTTSCE------------EEECCCGG-------------GCCCHH
T ss_pred HH--------hcCCcccc-ccccceeeechhhHHHhcCccc------------cccccccc-------------ccccHH
Confidence 64 22233333 333333321 1111111100 00000000 001136
Q ss_pred HHHHHHHhhC--CCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCC--CCC
Q 013204 192 NLEDLILKEG--PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSI--KPD 267 (447)
Q Consensus 192 ~le~~l~~~~--~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~--~~d 267 (447)
.+++.+.... ...+..++++.+.++.+...++.+.++++.++|++||+++++|+++++....+.......... ..+
T Consensus 120 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (345)
T d1v72a1 120 RLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVD 199 (345)
T ss_dssp HHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCC
T ss_pred HhhhhhcccccccccccceeeeeeccccccccccchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhcccccc
Confidence 6666654321 123455666666555555677888999999999999999999999986544443333333223 345
Q ss_pred eeeecccCCCcccceeEEE-eChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh---cHHHHHHHHHHH
Q 013204 268 LVSFAKALSSAYMPIGAIL-VSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER---NIVEQVNKIAPK 343 (447)
Q Consensus 268 ~v~~sK~l~gg~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~---~~~~~~~~~~~~ 343 (447)
..+++|..++++ ..+... ............ ......+.......++ ++....... ....+...+.++
T Consensus 200 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~aa~---~~~~~~~~~~~~~~~~~~~~~~~~ 270 (345)
T d1v72a1 200 ALSFGATKNGVL-AAEAIVLFNTSLATEMSYR-----RKRAGHLSSKMRFLSA---QIDAYLTDDLWLRNARKANAAAQR 270 (345)
T ss_dssp EEEECCGGGTCS-SCEEEEESSGGGHHHHHHH-----HHHTTCCCSSTHHHHH---HHHHHTSTTHHHHHHHHHHHHHHH
T ss_pred ccccCccccccc-cccccccchhhhhhhcccc-----ccccccccchhhHHhh---hhHHHHHHhhhhhhccchhhHHHH
Confidence 566777666553 333334 344433332211 1111122222222222 222222222 222333334444
Q ss_pred HHHhHhhccCCCceeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee---CCEEEEecCCCCCH
Q 013204 344 FQDGVKAFSDSPIIGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS---GDNIMMSPPFIMSP 419 (447)
Q Consensus 344 l~~~L~~l~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---g~~iR~~~~~~~t~ 419 (447)
+.+.+.++ +.+... ...+.++.+.+.. .+.+.|+++|+.+... .+.+||+++..+|+
T Consensus 271 ~~~~l~~~---~g~~~~~p~~~niv~~~~~~----------------~~~~~L~~~gi~v~~~~~~~~~lR~~~~~~~T~ 331 (345)
T d1v72a1 271 LAQGLEGL---GGVEVLGGTEANILFCRLDS----------------AMIDALLKAGFGFYHDRWGPNVVRFVTSFATTA 331 (345)
T ss_dssp HHHHHTTC---TTEEEESCCCSSEEEEEECH----------------HHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCH
T ss_pred HHHHHHhc---CCcEeccCCCccEEEEEcCH----------------HHHHHHHHcCCCccccCCCCCEEEEECCCCCCH
Confidence 44444443 333222 2234455555432 3678899999987543 36799999999999
Q ss_pred HHHHHHHHHHHHH
Q 013204 420 EEVDELISKYGKA 432 (447)
Q Consensus 420 e~i~~~~~~l~~~ 432 (447)
||||+++++|+++
T Consensus 332 edid~~le~lr~a 344 (345)
T d1v72a1 332 EDVDHLLNQVRLA 344 (345)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999875
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=2e-23 Score=206.08 Aligned_cols=369 Identities=13% Similarity=0.077 Sum_probs=217.0
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQ 111 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~A 111 (447)
++.++|+.+.+++.... +++...+..+... .+..+...+|++++++++ +.+.+++++||++||+.|
T Consensus 40 ~~~~idl~sd~~t~~~~-------~~~~a~~~~gd~~----Y~~~~~~~~le~~~a~l~---G~~~~~~~~sGt~A~~~a 105 (467)
T d2v1pa1 40 EDVFIDLLTDSGTGAVT-------QSMQAAMMRGDEA----FSGSRSYYALAESVKNIF---GYQYTIPTHQGRGAEQIY 105 (467)
T ss_dssp GGCSEECSCCTTCSCCC-------HHHHHHTTSCCCC----SSSCHHHHHHHHHHHHHT---CCSEEEEECSSTTTHHHH
T ss_pred cceeeeccccccchhhH-------HHHHhhccccchh----hcCCchHHHHHHHHHHHH---CCCEEEECCCCHHHHHHH
Confidence 45688988876654322 2222233222222 124567789999999997 677999999999999999
Q ss_pred HHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHH
Q 013204 112 VKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191 (447)
Q Consensus 112 l~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (447)
+++++++.......++...++..+.||+.+.+....+|.....-...... ..+.... .....+++
T Consensus 106 ~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~----~~~~~~~-----------~~~~~d~~ 170 (467)
T d2v1pa1 106 IPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAF----DTGVRYD-----------FKGNFDLE 170 (467)
T ss_dssp HHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTTTT----CTTSCCT-----------TTTCBCHH
T ss_pred HHHHhhccceEecCCCCcEEEEecccccccHHHHHHcCCeeeeccccccc----ccccccc-----------cccCCCHH
Confidence 99988776554445566778888999999888777776432110000000 0000000 00111248
Q ss_pred HHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCC---CccccccccccCC-----
Q 013204 192 NLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF---GRLGTMFGCDKYS----- 263 (447)
Q Consensus 192 ~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~---g~~g~~~~~~~~~----- 263 (447)
+|++.+...+++.++++++|++++++|..+++.+++++|+++|++||++||+|+++..- +..+........+
T Consensus 171 ~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~ 250 (467)
T d2v1pa1 171 GLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQIT 250 (467)
T ss_dssp HHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHH
T ss_pred HHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhhhccccccccccccccCCcccccc
Confidence 89999888777788999999999999889999999999999999999999999998611 0111111111111
Q ss_pred ----CCCCeeeecccCCCcccceeEEEeChh-HHHHhhhccCCCCccCcCCCCCCcHHHH-HHHHHHHHHHhhhcHHHHH
Q 013204 264 ----IKPDLVSFAKALSSAYMPIGAILVSPE-VSEVIHSQSNTLGSFSHGFTYSGHPVSC-AVAIEALKIYKERNIVEQV 337 (447)
Q Consensus 264 ----~~~d~v~~sK~l~gg~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~-~aa~a~l~~~~~~~~~~~~ 337 (447)
-..|++++++..+++....|+++.+++ +...............+..++.+...+. ++....+.....++..++.
T Consensus 251 ~~~~~~~d~~s~s~~K~~~~~~gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 330 (467)
T d2v1pa1 251 RETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYR 330 (467)
T ss_dssp HHHGGGCSEEEEESSSTTCCSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhcccCCEEEecCCCCCCCCCceeEEecchhhhhHHHhhcccccccccCcchhhhHHHHHHHHHHHhHHhhhHHHHHHH
Confidence 236888887544443233455555554 3332221100000122333444444433 3333444544456677888
Q ss_pred HHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee------------
Q 013204 338 NKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS------------ 405 (447)
Q Consensus 338 ~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------------ 405 (447)
.++.+++++.|++. ... +....+.+.+..............+ .........+.+.||.....
T Consensus 331 ~~~~~~l~~~L~~~-~~~-v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~ 404 (467)
T d2v1pa1 331 IAQVQYLVDGLEEI-GVV-CQQAGGHAAFVDAGKLLPHIPADQF----PAQALACELYKVAGIRAVEIGSFLLGRDPKTG 404 (467)
T ss_dssp HHHHHHHHHHHHHT-TCC-EEEECSSCEEEEHHHHSTTSCGGGC----HHHHHHHHHHHHHCEECEEESHHHHCBCTTTC
T ss_pred HHHHHHHHHHHHhc-CCc-ccCCCccceeecchhhcCCcchhhh----hhHHHHHHHHHHcCCeeecccccccccccccC
Confidence 88999999999876 212 2222222221111111111110000 01222344456777754321
Q ss_pred ------CCEEEEecC-CCCCHHHHHHHHHHHHHHHHH
Q 013204 406 ------GDNIMMSPP-FIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 406 ------g~~iR~~~~-~~~t~e~i~~~~~~l~~~l~~ 435 (447)
.+.+|+++| ..+|+||||+++++|+++++.
T Consensus 405 ~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~~ 441 (467)
T d2v1pa1 405 KQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_dssp SBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHHHT
T ss_pred CccCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHHH
Confidence 256999865 577999999999999999864
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.89 E-value=1.7e-21 Score=187.11 Aligned_cols=339 Identities=13% Similarity=0.117 Sum_probs=210.2
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhc----CCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhh
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNT----LPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSE 106 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGse 106 (447)
+++.|+|.. ..|..+..|++++.+.+.. ............+...++.+.+++++ +.+.++++|++|||+
T Consensus 6 ~~~~yld~~------~~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~-~~~~~~i~~~~g~t~ 78 (381)
T d1elua_ 6 ANKTYFNFG------GQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETF-NVDPNTITITDNVTT 78 (381)
T ss_dssp TTSEECCTT------TCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHT-TSCGGGEEEESSHHH
T ss_pred CCCEEeeCC------cccCCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHh-CCCcccEEEECChHH
Confidence 556788864 3466777899998887653 22111111112233445666777776 356779999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhc---ccCCccccCCCCCCCCcceecCCCCcccCCCCCCChh
Q 013204 107 ANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAAS---LSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEE 183 (447)
Q Consensus 107 A~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (447)
|+..++..+. ..+++.|++.+..|++....... ..|... ..++..... .
T Consensus 79 a~~~~~~~l~-------~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~------------~~v~~~~~~------~--- 130 (381)
T d1elua_ 79 GCDIVLWGLD-------WHQGDEILLTDCEHPGIIAIVQAIAARFGITY------------RFFPVAATL------N--- 130 (381)
T ss_dssp HHHHHHHHSC-------CCTTCEEEEETTCCHHHHHHHHHHHHHHCCEE------------EEECCGGGS------S---
T ss_pred Hhhhcchhhh-------hcCCceEEEeccccceeeeccccccccccccc------------ccccccccc------c---
Confidence 9999887641 13457788888777654321111 112111 111111100 0
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhc----CCEEEEehhhcCCCcccccccc
Q 013204 184 EYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKY----DILFIADEVICAFGRLGTMFGC 259 (447)
Q Consensus 184 ~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~----g~~li~DEv~~g~g~~g~~~~~ 259 (447)
.++.++.+.+....+++++++..+++.+|.+.| +++|.++|+++ ++++++|.+|+ +|.. + +
T Consensus 131 ------~~~~~~~l~~~i~~~t~~v~i~~~~n~tG~~~~----~~~I~~l~~~~~~~~~~~~~vD~~~~-~g~~--~--~ 195 (381)
T d1elua_ 131 ------QGDAAAVLANHLGPKTRLVILSHLLWNTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSL--P--L 195 (381)
T ss_dssp ------SSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTB--C--C
T ss_pred ------cchHHHHHHhhhcccccccccccccccccccch----hhHHHHHHhhcccccccccccccccc-cccc--c--c
Confidence 012223333333357889999999888888888 89999999984 69999999986 5432 2 2
Q ss_pred ccCCCCCCeeeec--ccCCCcccceeEEEeChhHHHHhhhccCCCCccC---------------cCCCCCCcHHHHHHHH
Q 013204 260 DKYSIKPDLVSFA--KALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFS---------------HGFTYSGHPVSCAVAI 322 (447)
Q Consensus 260 ~~~~~~~d~v~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~---------------~~~t~~~~~~~~~aa~ 322 (447)
......+|++++| |.++++ .++|+++.+++..+.+........... .....+.+...+.+..
T Consensus 196 ~~~~~~~D~~~~s~~K~~~~p-~G~g~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~ 274 (381)
T d1elua_ 196 DFSRLEVDYYAFTGHKWFAGP-AGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLL 274 (381)
T ss_dssp CTTTSCCSEEEEESSSTTCCC-TTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHH
T ss_pred ccccccccccccccccccccc-chhhHHHhhHHHHHhcCcccccccccccccccccccccccccccccccccchhhhhhh
Confidence 3333458888765 888887 688999999987776542110000000 0011134445555566
Q ss_pred HHHHHHhhh----cHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc
Q 013204 323 EALKIYKER----NIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH 398 (447)
Q Consensus 323 a~l~~~~~~----~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 398 (447)
++++.+... ...++..++.+++.+.|+++....++......+.++.+.+.... ..+.+.+.|.++
T Consensus 275 ~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~vsf~~~~~~-----------~~~~i~~~L~~~ 343 (381)
T d1elua_ 275 AALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPL-----------GHRAIVQKLEEQ 343 (381)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSS-----------CHHHHHHHHHHT
T ss_pred hhhhhHHHhcccccchhhhhhHHHHHHHHHhcCCCeEecCCCCccccEEEEEcCCCC-----------CHHHHHHHHHhC
Confidence 666655442 23466777788888888887432222222234556566554322 145688899999
Q ss_pred CceEEeeC--CEEEEecCCCCCHHHHHHHHHHHHH
Q 013204 399 GMLVRVSG--DNIMMSPPFIMSPEEVDELISKYGK 431 (447)
Q Consensus 399 Gi~~~~~g--~~iR~~~~~~~t~e~i~~~~~~l~~ 431 (447)
||.++..+ +.+|+++++.+|++|||+++++|++
T Consensus 344 gi~v~~~~~~~~lRis~~~~nt~edid~ll~~l~e 378 (381)
T d1elua_ 344 RIYLRTIADPDCIRACCHYITDEEEINHLLARLAD 378 (381)
T ss_dssp TEECEEETTTTEEEEECCTTCCHHHHHHHHHHHTT
T ss_pred CcEEEecCCCCEEEEecCCCCCHHHHHHHHHHHHh
Confidence 99987654 6799999999999999999999875
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.88 E-value=2.4e-21 Score=186.62 Aligned_cols=340 Identities=13% Similarity=0.060 Sum_probs=205.2
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhHH
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEAN 108 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA~ 108 (447)
.+|+.+||+..|... |. .++.+.+++.+..... ..|+...+..+....+++.+.+.+. ...+++|++++|+++++
T Consensus 25 ~~g~~vi~l~~G~p~--~~-~p~~~~~al~~~~~~~-~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l 100 (389)
T d2gb3a1 25 KRGVRIHHLNIGQPD--LK-TPEVFFERIYENKPEV-VYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAI 100 (389)
T ss_dssp HTTCEEEECSSCCCC--SC-CCTHHHHHHHHTCCSS-CCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHH
T ss_pred HcCCCEEECCCCCCC--CC-CCHHHHHHHHhcCCCC-CCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEecccccccc
Confidence 468899999776432 32 4778888887755432 2233323344455556666655543 24678999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHH
Q 013204 109 DTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188 (447)
Q Consensus 109 ~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (447)
..+++... ..++.|++.+|.|................. +.........+
T Consensus 101 ~~~~~~l~--------~~gd~V~i~~P~y~~~~~~~~~~g~~~~~~-------------~~~~~~~~~~~---------- 149 (389)
T d2gb3a1 101 LFSFAVIA--------NPGDEILVLEPFYANYNAFAKIAGVKLIPV-------------TRRMEEGFAIP---------- 149 (389)
T ss_dssp HHHHHHHC--------CTTCEEEEEESCCTHHHHHHHHHTCEEEEE-------------ECCGGGTSCCC----------
T ss_pred cccccccc--------cCCCeEEEeCCCCccccccccccCcccccc-------------ccccccccchh----------
Confidence 99998764 345789999999987754444433221110 00000000000
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCe
Q 013204 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDL 268 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~ 268 (447)
+.+. ....++....++.+|.|++| ...+.+.+++|.++|++|++++|.||+|..+...+.............+
T Consensus 150 --~~~~---~~~~~~~~~~~l~nP~NPtG--~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~ 222 (389)
T d2gb3a1 150 --QNLE---SFINERTKGIVLSNPCNPTG--VVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVV 222 (389)
T ss_dssp --TTGG---GGCCTTEEEEEEESSCTTTC--CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEE
T ss_pred --hhhh---hhcccCccEEEeCCCCcccc--ccchHHHHHHHHhhcccCCEEEEEecccccccccccccccccccccccc
Confidence 1111 11222334455556555554 4458899999999999999999999999988665543222211111122
Q ss_pred e--eecccCCCcccceeEEEeChh-HHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHHHHHHH
Q 013204 269 V--SFAKALSSAYMPIGAILVSPE-VSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQVNKIAPK 343 (447)
Q Consensus 269 v--~~sK~l~gg~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~~~~~~ 343 (447)
+ ++||.++.+++++|+++++++ +...+.. .....++.+++.+.++.+.+...+ -+...+.++++.+.
T Consensus 223 v~~s~sK~~~~~GlRiG~~~~~~~~i~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 294 (389)
T d2gb3a1 223 VIDSVSKKFSACGARVGCLITRNEELISHAMK--------LAQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVET 294 (389)
T ss_dssp EEEESTTTTTCGGGCCEEEECSCHHHHHHHHH--------HHHHSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCcccceeeeeccchhHHHHHhh--------hhhccccccccccccccccccccchhcccccccccccchh
Confidence 2 467988876699999998665 4444432 111244455666666555553211 13344566666677
Q ss_pred HHHhHhhccCCCceeeEe-eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc------CceEEeeC----------
Q 013204 344 FQDGVKAFSDSPIIGEIR-GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH------GMLVRVSG---------- 406 (447)
Q Consensus 344 l~~~L~~l~~~~~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------Gi~~~~~g---------- 406 (447)
+.+.|+++ +...... ..|.++.++++... ...+.++|+++ |+.+.|+.
T Consensus 295 ~~~~L~~~---~~~~~~~p~~g~~~~~~lp~~~------------~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~ 359 (389)
T d2gb3a1 295 VLKKLEEH---GLKRFTKPSGAFYITAELPVED------------AEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGK 359 (389)
T ss_dssp HHHHHHHT---TCCCBCCCSBSSEEEEECSSSC------------HHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTS
T ss_pred hhhhhhhh---ccccccCCCceEEEEEeCCCCC------------HHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCC
Confidence 77777665 3222222 34556677765322 44577777654 56666541
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 407 DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 407 ~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+.+||+ +..+++++++++++|.++++++
T Consensus 360 ~~iRis--~~~~~~~l~~a~~~L~~~lk~f 387 (389)
T d2gb3a1 360 KEIRIA--CVLEKDLLSRAIDVLMEGLKMF 387 (389)
T ss_dssp SEEEEE--CCSCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEE--EcCCHHHHHHHHHHHHHHHHHh
Confidence 469999 6789999999999999998874
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=6.6e-21 Score=185.17 Aligned_cols=359 Identities=13% Similarity=0.059 Sum_probs=210.9
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCc--ccccCcCCChHHHHHHHHHHHhcCc-CC-CCeEEEeCChhhH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPF--YHSFWNRTTKPSLDLAKELLEMFTA-SK-MAKVFFTNSGSEA 107 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~-~~-~~~v~~~~sGseA 107 (447)
+..+||+..|.. .+. .++.+.+++.+++.+... .|+...+..+....+++++.+.+.. .. .++|++++|+++|
T Consensus 24 ~~dvI~l~~G~p--~~~-~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~a 100 (418)
T d1w7la_ 24 EHDVVNLGQGFP--DFP-PPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGA 100 (418)
T ss_dssp TSCCEECCCCSC--SSC-CCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHH
T ss_pred CCCCEECCCCCC--CCC-CCHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHH
Confidence 456889877742 223 467888999998875322 2232334445555666666655432 22 2479999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 108 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 108 ~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
+..+++.+. .+++.|++.++.|+.+.......+............... ... ...+.+.
T Consensus 101 l~~~~~~l~--------~~g~~vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~---~~~----------~~~~~~~- 158 (418)
T d1w7la_ 101 LFTAFQALV--------DEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQN---GEL----------GSSSNWQ- 158 (418)
T ss_dssp HHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECC------CCS----------EEGGGEE-
T ss_pred HHHHHHhhc--------cCCceeeccccccchhHHHHHHcCCEeeccccccccccc---ccc----------ccccCcc-
Confidence 999998774 345889999999998865554444322211100000000 000 0000000
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-cc-ccCCCC
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-GC-DKYSIK 265 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~~-~~~~~~ 265 (447)
-+.++......+.....++..|.|++| ...+.+.+++|.++|++|++++|.||+|.++...+... .. ...+..
T Consensus 159 ---~d~~~~~~~~~~~~~~i~~~~p~NPtG--~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~ 233 (418)
T d1w7la_ 159 ---LDPMELAGKFTSRTKALVLNTPNNPLG--KVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMW 233 (418)
T ss_dssp ---CCHHHHHHHCCTTEEEEEEESSCTTTC--CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTG
T ss_pred ---cchhhhhccccccccceeccCcCCccc--ccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccc
Confidence 112222233334444555566656665 55688999999999999999999999999886655422 11 222222
Q ss_pred CCe---eeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh-----hc----H
Q 013204 266 PDL---VSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE-----RN----I 333 (447)
Q Consensus 266 ~d~---v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-----~~----~ 333 (447)
+.. .++||.++.+++|+|++++++++++.+... ....+++.+.+++.++.+++..... .+ .
T Consensus 234 ~~~i~~~S~SK~~~~pG~RvG~~v~~~~~~~~l~~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 306 (418)
T d1w7la_ 234 ERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTV-------HQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQF 306 (418)
T ss_dssp GGEEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHHH-------HHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHH
T ss_pred cccceecccCccccCCCCcccccccchhhhhhhccc-------cccccccccchhhHHHHHHhhhccccccccccccccc
Confidence 223 357898876559999999999988877632 2223555566666666666543211 12 2
Q ss_pred HHHHHHHHHHHHHhHhhccCCCceeeEeee-eeEEEEEeecCCCCCCCC--CCCcchHHHHHHHH-HHcCceEEeeC---
Q 013204 334 VEQVNKIAPKFQDGVKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPF--PPEWGIGAYFGAQC-EKHGMLVRVSG--- 406 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~l-~~~Gi~~~~~g--- 406 (447)
.+.++++.+.+.+.|+++ ++ ....+. |.++.+++.+.......+ .........+.++| .++||.+.|+.
T Consensus 307 ~~~~~~~r~~l~~~L~~~---g~-~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~ 382 (418)
T d1w7la_ 307 PQAMQRCRDHMIRSLQSV---GL-KPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFY 382 (418)
T ss_dssp HHHHHHHHHHHHHHHHTT---TC-EEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGS
T ss_pred hhhhhhhhhhhhhhhhhc---CC-cccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhc
Confidence 344555555555566554 33 233344 556677775421110000 01111244566665 56799998751
Q ss_pred ---------CEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 407 ---------DNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 407 ---------~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
+.+|++ +..+++++++++++|++..
T Consensus 383 ~~~~~~~~~~~iRis--~~~~~~~l~~a~~rl~~~~ 416 (418)
T d1w7la_ 383 SVPHQKHFDHYIRFC--FVKDEATLQAMDEKLRKWK 416 (418)
T ss_dssp CHHHHTTSCSEEEEE--CCCCHHHHHHHHHHHHHHH
T ss_pred CCCccCCCCCEEEEE--EcCCHHHHHHHHHHHHHHh
Confidence 469999 6779999999999998754
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.87 E-value=4e-21 Score=186.90 Aligned_cols=352 Identities=14% Similarity=0.127 Sum_probs=208.8
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCC---cccccCcCCChHHHHHHHHHHHhcC--cCCCCeEEEeCChh
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP---FYHSFWNRTTKPSLDLAKELLEMFT--ASKMAKVFFTNSGS 105 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~v~~~~sGs 105 (447)
.++++|||..|.....+ ...+.+.+++.+.++... ..|+...+..+....+++.+.+.+. ..++++|++++|++
T Consensus 36 ~~~~~I~l~~G~Pd~~~-~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~ 114 (420)
T d1vp4a_ 36 ADKDAISFGGGVPDPET-FPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQ 114 (420)
T ss_dssp TSTTCEECCCCSCCGGG-SCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHH
T ss_pred CCCCcEecCCcCCCCcc-CCHHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchh
Confidence 56678898766321110 012445666666654421 1122223344455556666655543 24678999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHH
Q 013204 106 EANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEY 185 (447)
Q Consensus 106 eA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (447)
+|+..++.... .+++.|++.+|+|..........+.... .++..+ .+.+
T Consensus 115 ~al~~~~~~~~--------~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~-------------~~~~~~------~~~~---- 163 (420)
T d1vp4a_ 115 QALDLIGKLFL--------DDESYCVLDDPAYLGAINAFRQYLANFV-------------VVPLED------DGMD---- 163 (420)
T ss_dssp HHHHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHTTTCEEE-------------EEEEET------TEEC----
T ss_pred hhHHHHHHhhh--------ccccccccccccccchhHHHHHHhhhcc-------------cccccc------cccc----
Confidence 99999988763 3458899999999877544443332111 111100 0111
Q ss_pred HHHHHHHHHHHH----Hhh-CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccc
Q 013204 186 STRLANNLEDLI----LKE-GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCD 260 (447)
Q Consensus 186 ~~~~~~~le~~l----~~~-~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~ 260 (447)
++.++..+ ... ..+...++++.+.++.+| ...+.+.+++|.++|++|++++|.||+|..+...+......
T Consensus 164 ----~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG-~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~ 238 (420)
T d1vp4a_ 164 ----LNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAG-VTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPI 238 (420)
T ss_dssp ----HHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCH
T ss_pred ----cchhhhhhhhhHHHhhccccceeeEecCCCCccc-hhhhhhhhhhhhhhhhcccccccccchhhhccccCcccccc
Confidence 12222221 111 122344555544444444 45688999999999999999999999999876555432111
Q ss_pred cCCCCCCee----eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh----hhc
Q 013204 261 KYSIKPDLV----SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK----ERN 332 (447)
Q Consensus 261 ~~~~~~d~v----~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~----~~~ 332 (447)
.....++.+ +++|.+..| +++|++++++++++.+... ....+.+.+.+.++++...++... -.+
T Consensus 239 ~~~~~~~~~i~~~s~sk~~~~G-~RiG~~~~~~~~i~~l~~~-------~~~~~~~~~~~~q~~~a~~l~~~~~~~~~~~ 310 (420)
T d1vp4a_ 239 FKIGGPERVVLLNTFSKVLAPG-LRIGMVAGSKEFIRKIVQA-------KQSADLCSPAITHRLAARYLERYDLLEQLKP 310 (420)
T ss_dssp HHHHCTTTEEEEEESTTTTCGG-GCEEEEECCHHHHHHHHHH-------HHHHHSSCCHHHHHHHHHHHHHSCHHHHTHH
T ss_pred cccccccceeEEeccccccccc-cccccccccchhhhhhhhh-------hhhccccCchhhhhhhhhhcccccccccchh
Confidence 100123322 345655444 9999999999998887632 111233444555555444443211 123
Q ss_pred HHHHHHHHHHHHHHhHhhc-cCCCceeeEeeee-eEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC----
Q 013204 333 IVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTG-LILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG---- 406 (447)
Q Consensus 333 ~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g---- 406 (447)
..+.++++.+.+.+.|++. ...+.+....+.| .++++++.+...+ ..+.+.|+++||++.|+.
T Consensus 311 ~~~~~~~~~~~~~~~L~~~~~~~~g~~~~~p~gg~f~~~~~~~~~d~-----------~~~~~~l~~~gV~v~PG~~F~~ 379 (420)
T d1vp4a_ 311 TIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFDT-----------WEMFEYAKRKKVFYVPGRVFKV 379 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCTTCCT-----------TTTHHHHHHHTEECEEGGGGCT
T ss_pred HHHHhhhhcccchhhhhhhhccCCCcEEecCCceEEEEEECCCCCCH-----------HHHHHHHHHCCeEEEechhhCC
Confidence 4566666777777777665 4444444455555 4667777543221 125678899999998751
Q ss_pred -----CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013204 407 -----DNIMMSPPFIMSPEEVDELISKYGKALKATEER 439 (447)
Q Consensus 407 -----~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 439 (447)
+.+|++.. ..+++++++++++|++++++.+++
T Consensus 380 ~~~~~~~iRls~~-~~~~e~l~~a~~rL~~~l~~~~~~ 416 (420)
T d1vp4a_ 380 YDEPSPSMRLSFC-LPPDEKIVEGIKRLREVVLEYGKE 416 (420)
T ss_dssp TCCCCSEEEEECS-SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEeC-cCCHHHHHHHHHHHHHHHHHhhHh
Confidence 46999942 368899999999999999998764
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.87 E-value=3.4e-20 Score=179.84 Aligned_cols=351 Identities=11% Similarity=0.018 Sum_probs=202.3
Q ss_pred CCCCEEEecCCccccccCC-CCCHHHHHHHHHHHhcCC-cccccCcCCChHHHHHHHHHHHhcC-------cCCCCeEEE
Q 013204 30 VNGKKYLDSLAGLWCTALG-GSEPRLVAAATAQLNTLP-FYHSFWNRTTKPSLDLAKELLEMFT-------ASKMAKVFF 100 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~-------~~~~~~v~~ 100 (447)
..++.+||+..|....... ...+.+++++.+.+.... ..|+...+..+....+++.+.+.+. ...+++|++
T Consensus 27 ~~~~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~i 106 (412)
T d1bw0a_ 27 PSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVL 106 (412)
T ss_dssp CSCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEE
T ss_pred CCCCCcEECcCCCCCCCCCccccHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEEE
Confidence 4567889987663211111 134677888888776432 2233333444555566666665531 246679999
Q ss_pred eCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCC
Q 013204 101 TNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE 180 (447)
Q Consensus 101 ~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (447)
++|+++|+..+++... ..++.|++.+|+|+++.......+..... ++......+.
T Consensus 107 t~G~~~al~~~~~~l~--------~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~-------------v~~~~~~~~~---- 161 (412)
T d1bw0a_ 107 CSGGSHGILMAITAIC--------DAGDYALVPQPGFPHYETVCKAYGIGMHF-------------YNCRPENDWE---- 161 (412)
T ss_dssp ESHHHHHHHHHHHHHC--------CTTCEEEEEESCCTHHHHHHHHTTCEEEE-------------EEEEGGGTTE----
T ss_pred ecccccchhhhhhhhh--------ccccceeeeeccchhhhhhhhccCccccc-------------cccccccccc----
Confidence 9999999999998763 34578999999998886555443322211 1110000000
Q ss_pred ChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-cc
Q 013204 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-GC 259 (447)
Q Consensus 181 ~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~~ 259 (447)
.+++++++.. .+.....++++|.|++| ...+.+.+++|.++|++|++++|.||+|.++...|... ..
T Consensus 162 -------~~~~~l~~~~---~~~~~~~~l~np~NPtG--~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~ 229 (412)
T d1bw0a_ 162 -------ADLDEIRRLK---DDKTKLLIVTNPSNPCG--SNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNAT 229 (412)
T ss_dssp -------ECHHHHHHHC---CTTEEEEEEESSCTTTC--CCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCC
T ss_pred -------hhhHHHHhhh---hcccccccccccccccc--ccchhhhccccccccccCCeeeechhhHHHhccCCCCCccc
Confidence 0024444433 34445566666767766 45688999999999999999999999999886665421 11
Q ss_pred -ccC---CCCCCee---eecccCCCcccceeEEEeChh------HHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHH
Q 013204 260 -DKY---SIKPDLV---SFAKALSSAYMPIGAILVSPE------VSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALK 326 (447)
Q Consensus 260 -~~~---~~~~d~v---~~sK~l~gg~~~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~ 326 (447)
... ......+ ++||.++.+++|+|++++++. ++..... ....+.+.....++++.+.+.
T Consensus 230 ~~~~~~~~~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 301 (412)
T d1bw0a_ 230 FTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKR--------VGMLVCGPCTVVQAALGEALL 301 (412)
T ss_dssp CCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHH--------HHHHHTCSCHHHHHHHHHHHH
T ss_pred cccccccccccccccccccCccCccCCCCcccccccchhhcchhhhhhhcc--------ccccccCCchhhhhhcccccc
Confidence 111 1111222 479998876699999987543 2222211 011122233333333333222
Q ss_pred HHhh---hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeee-eEEEEEeecCCCCCCCCCCCcchHHHHHHHHHH-cCce
Q 013204 327 IYKE---RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTG-LILGTEFADNKSPNEPFPPEWGIGAYFGAQCEK-HGML 401 (447)
Q Consensus 327 ~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~ 401 (447)
.... .+..+.++++.+.+.+.|.+. ..+....+.| .++.+.+....... ......+.++|++ .||+
T Consensus 302 ~~~~~~~~~~~~~~~~~r~~~~~~l~~~---~g~~~~~p~gg~~l~~~~~~~~~~~------~~~~~~~~~~ll~~~gV~ 372 (412)
T d1bw0a_ 302 NTPQEHLDQIVAKIEESAMYLYNHIGEC---IGLAPTMPRGAMYLMSRIDLEKYRD------IKTDVEFFEKLLEEENVQ 372 (412)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHTTS---TTEEECCCCBTTEEEEEECGGGBSS------CCSHHHHHHHHHHHHCEE
T ss_pred cccccccccccchhHHHHHHHHHHHHHh---cCceecCCCCceEEEEeCChhhcCC------CCCHHHHHHHHHHhCCEE
Confidence 1001 223344444555555555432 3333444454 45556664321100 0013456777665 5999
Q ss_pred EEeeC-----CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 402 VRVSG-----DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 402 ~~~~g-----~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+.|+. +.+||+ +..+++++++++++|++++++.
T Consensus 373 v~PG~~Fg~~g~iRis--~~~~~e~l~eal~Rl~~~l~~~ 410 (412)
T d1bw0a_ 373 VLPGTIFHAPGFTRLT--TTRPVEVYREAVERIKAFCQRH 410 (412)
T ss_dssp CEEGGGGTCTTEEEEE--CCSCHHHHHHHHHHHHHHHHHH
T ss_pred EEeccccCCCCeEEEE--EcCCHHHHHHHHHHHHHHHHhc
Confidence 99862 579999 6789999999999999988763
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=5.6e-20 Score=176.38 Aligned_cols=337 Identities=12% Similarity=0.067 Sum_probs=205.0
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc-CCCC-eEEEeCChhhHHH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA-SKMA-KVFFTNSGSEAND 109 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~-~v~~~~sGseA~~ 109 (447)
++..||++.|.-. +. .++.+++++.+.+.+..+.|+...+..+....+++.+.+.+.. ...+ .+++++|+++|+.
T Consensus 25 ~~~~i~l~~G~Pd--~~-~p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~ 101 (382)
T d1u08a_ 25 QHQAINLSQGFPD--FD-GPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALY 101 (382)
T ss_dssp HTTCEECCCSSCS--SC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHH
T ss_pred cCCCEEccCCCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHH
Confidence 4567898877432 33 4678899999998875544444444556666677777665532 2344 5999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (447)
.+++.+. ...+.|++.++.|+................ +.+... + .. +
T Consensus 102 ~~~~~l~--------~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~-------------~~~~~~-~---~~--------d 148 (382)
T d1u08a_ 102 AAITALV--------RNGDEVICFDPSYDSYAPAIALSGGIVKRM-------------ALQPPH-F---RV--------D 148 (382)
T ss_dssp HHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTCEEEEE-------------ECCTTT-C---CC--------C
T ss_pred HHHhhcc--------cccceEEEecccccchhhhhhhccccceec-------------cccccc-c---cC--------C
Confidence 9998774 445789999999988765544433211110 000000 0 00 0
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccc-cCCCCCC-
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCD-KYSIKPD- 267 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~-~~~~~~d- 267 (447)
++++++... ++....+++.|.|++| .+.+.+.+++|.++|++++++++.||++.-+...+...... .....++
T Consensus 149 ~~~l~~~~~---~~~~~i~l~~P~NPtG--~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (382)
T d1u08a_ 149 WQEFAALLS---ERTRLVILNTPHNPSA--TVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRER 223 (382)
T ss_dssp HHHHHHHCC---TTEEEEEEESSCTTTC--CCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTT
T ss_pred HHHHhhhhc---cCccEEEECCCCcccc--cccccccchhhhhhhccccceeeeecchhhccccccccccccccccccCc
Confidence 245554333 3344555566666665 45688899999999999999999999987543332211110 0000111
Q ss_pred ---eeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh--hcHHHHHHHHHH
Q 013204 268 ---LVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE--RNIVEQVNKIAP 342 (447)
Q Consensus 268 ---~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~--~~~~~~~~~~~~ 342 (447)
+.++||.++.+++++|++++++++++.+... ....+++.+...+.++.++++.-.+ ......++++.+
T Consensus 224 ~i~~~s~SK~~~~pG~RiG~~v~~~~~~~~~~~~-------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~ 296 (382)
T d1u08a_ 224 AVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKV-------HQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRD 296 (382)
T ss_dssp EEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHHH-------HHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHH
T ss_pred EEEEeeccccccCCcccchhhhccchhHHHHHhh-------hcccccccccccccccccccccchHHHHHHHHHHHhhhh
Confidence 2357898875559999999999988877532 2223456677777777776653211 123334444444
Q ss_pred HHHHhHhhccCCCceeeEeeee-eEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEeeC---------CEEEE
Q 013204 343 KFQDGVKAFSDSPIIGEIRGTG-LILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVSG---------DNIMM 411 (447)
Q Consensus 343 ~l~~~L~~l~~~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~g---------~~iR~ 411 (447)
.+.+.++. .+ +..+.+.| .++++++...... ....+.++|+ +.||++.|+. +.+|+
T Consensus 297 ~l~~~~~~---~g-~~~~~p~gg~~~~~~~~~~~~~---------d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ri 363 (382)
T d1u08a_ 297 ILVNALNE---SR-LEILPCEGTYFLLVDYSAVSTL---------DDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRL 363 (382)
T ss_dssp HHHHHTTS---SS-CEECCCCBSSEEEEECTTTCCS---------CHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEE
T ss_pred hhhhhhcc---CC-cEEecCCceEEEEEecCCCCCC---------CHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEE
Confidence 44333322 22 33344554 4566666532211 1345777765 6799998751 46999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q 013204 412 SPPFIMSPEEVDELISKYGK 431 (447)
Q Consensus 412 ~~~~~~t~e~i~~~~~~l~~ 431 (447)
+ +..++|+|++++++|++
T Consensus 364 s--~~~~~e~l~~al~RL~~ 381 (382)
T d1u08a_ 364 C--FAKKESTLLAAAERLRQ 381 (382)
T ss_dssp E--CCSCHHHHHHHHHHHTT
T ss_pred E--EeCCHHHHHHHHHHHhC
Confidence 9 66799999999999875
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.85 E-value=2.1e-19 Score=169.14 Aligned_cols=312 Identities=14% Similarity=0.102 Sum_probs=196.2
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC--cCCCCeEEEeCChhhH
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT--ASKMAKVFFTNSGSEA 107 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~v~~~~sGseA 107 (447)
..+++.+++..|- ++++ .++.+.+++.+.+......+ .+.....+|.+.+++++. ....++|++++|++++
T Consensus 16 ~~~~d~~~l~~~e--np~~-~p~~i~~~~~~~~~~~~~~~----yp~~g~~~Lr~aia~~~~~~~v~~d~I~it~G~~~~ 88 (334)
T d2f8ja1 16 TEKRDKTYLALNE--NPFP-FPEDLVDEVFRRLNSDALRI----YYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEI 88 (334)
T ss_dssp CCCCCSEECSSCC--CSSC-CCHHHHHHHHHHCCTTGGGS----CCCSSCHHHHHHHHHHHTCSSCCGGGEEEEEHHHHH
T ss_pred ccCCCceEEECCC--CCCC-CCHHHHHHHHHHhhcchhcC----CCCCCcHHHHHHHHHHhcccCCCcceEEecCcchhH
Confidence 4577788876553 6777 57899999998886533221 122234566677776653 2467789999999888
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 108 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 108 ~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
+..+++. .++|++.+|+|.++.......+.... .+++...+.. +
T Consensus 89 l~~l~~~------------~d~v~i~~P~y~~~~~~~~~~g~~~v-------------~v~~~~~~~~--~--------- 132 (334)
T d2f8ja1 89 IYVMMLM------------FDRSVFFPPTYSCYRIFAKAVGAKFL-------------EVPLTKDLRI--P--------- 132 (334)
T ss_dssp HHHHHHH------------SSEEEECSSCCHHHHHHHHHHTCCEE-------------ECCCCTTSCC--C---------
T ss_pred HHHHhhh------------ccccccccccccccccchhccCCccc-------------cccccccccc--c---------
Confidence 8776542 26799999999887655544433221 1222111100 0
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCC
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPD 267 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d 267 (447)
+ ...++...+++.+|.|++|. +. +.+ +|.++ .++++++|.||++.++......... ...+.
T Consensus 133 ---~-------~~~~~~~~l~l~nP~NPtG~-~~-s~~---~l~~~-~~~~~~ii~Dd~~~~~~~~~~~~~~---~~~~~ 193 (334)
T d2f8ja1 133 ---E-------VNVGEGDVVFIPNPNNPTGH-VF-ERE---EIERI-LKTGAFVALDEAYYEFHGESYVDFL---KKYEN 193 (334)
T ss_dssp ---C-------CCCCTTEEEEEESSCTTTCC-CC-CHH---HHHHH-HTTTCEEEEECTTGGGTCCCCGGGG---GTCSS
T ss_pred ---c-------cccccceEEEecccccccce-ee-cHH---Hhhcc-ccceeEEeecccchhhccccccccc---ccCce
Confidence 0 01123445666777666653 33 443 44443 4689999999998755322221111 11122
Q ss_pred ee---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh-hcHHHHHHHHHHH
Q 013204 268 LV---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE-RNIVEQVNKIAPK 343 (447)
Q Consensus 268 ~v---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-~~~~~~~~~~~~~ 343 (447)
++ ++||.++.+++++|++++++++++.+... . .++..+..++.++.+.++..+. ++..+.++++.++
T Consensus 194 ~i~~~S~SK~~~~~G~R~G~~~~~~~~i~~l~~~-------~--~~~~~s~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~ 264 (334)
T d2f8ja1 194 LAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRV-------R--LPFNVSYVSQMFAKVALDHREIFEERTKFIVEERER 264 (334)
T ss_dssp EEEEEESTTTSSCTTTCEEEEEECHHHHHHHHHH-------S--CTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCccccchhhhhhhhcccchHHHHHHHHh-------h--cccccchhhhhhcccccccccchhhHHHHHHHHHHH
Confidence 22 58998875559999999999999988642 1 2344566677766666653221 2345666667777
Q ss_pred HHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeCCEEEEecCCCCCHHHHH
Q 013204 344 FQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVD 423 (447)
Q Consensus 344 l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g~~iR~~~~~~~t~e~i~ 423 (447)
+.+.|+++ ++ ....+.|.++.+.+... ....+.+.|+++||+++++.+.+|++ ..+++|++
T Consensus 265 l~~~L~~~---g~-~~~~~~g~f~~~~~~~~------------~~~~~~~~L~~~GI~vr~~~~~vRis---~g~~ee~~ 325 (334)
T d2f8ja1 265 MKSALREM---GY-RITDSRGNFVFVFMEKE------------EKERLLEHLRTKNVAVRSFREGVRIT---IGKREEND 325 (334)
T ss_dssp HHHHHHHH---TC-EECCCCSSEEEEECCHH------------HHHHHHHHHHHTTEECEEETTEEEEE---CCCHHHHH
T ss_pred HHHHHHHC---CC-eECCCCceEEEEECCCC------------CHHHHHHHHHHCCCEECCCCCeEEEE---cCCHHHHH
Confidence 77777776 21 22355677766665542 24568899999999999888999999 35888899
Q ss_pred HHHHHHHH
Q 013204 424 ELISKYGK 431 (447)
Q Consensus 424 ~~~~~l~~ 431 (447)
+++++|++
T Consensus 326 ~l~~~l~~ 333 (334)
T d2f8ja1 326 MILRELEV 333 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99888875
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=5.3e-19 Score=170.71 Aligned_cols=334 Identities=15% Similarity=0.096 Sum_probs=209.0
Q ss_pred EEEecCCccccccCCCCCHHHHHHHHHHHhcCCcc-cccC---c-CCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHH
Q 013204 34 KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY-HSFW---N-RTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEAN 108 (447)
Q Consensus 34 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~~~---~-~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~ 108 (447)
.|+|..++ |..++.+.+++.+.+.+.... ++.. + ...+...+..+.+++++.....+.++|++++|+++
T Consensus 24 iYld~a~~------~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~ 97 (405)
T d1jf9a_ 24 AYLDSAAS------AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGI 97 (405)
T ss_dssp EECCTTTC------CCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHH
T ss_pred EEEeCccc------cCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcccccccCcHHHHH
Confidence 58886444 457899999999988763221 1100 0 01233445566777776434557899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcc---cCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHH
Q 013204 109 DTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASL---SGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEY 185 (447)
Q Consensus 109 ~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (447)
..+++....... .+++.|++.+..||......... .|... ..++...... .+
T Consensus 98 ~~~~~~~~~~~~----~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v------------~~~~~~~~g~-----~~---- 152 (405)
T d1jf9a_ 98 NLVANSWGNSNV----RAGDNIIISQMEHHANIVPWQMLCARVGAEL------------RVIPLNPDGT-----LQ---- 152 (405)
T ss_dssp HHHHHHHHHHHC----CTTCEEEEETTCCGGGTHHHHHHHHHHTCEE------------EEECBCTTSC-----BC----
T ss_pred HHHHhccccccc----CCCCEEEEEeCcccchHHHHHHHHHHcCcEE------------EEECCCCCCc-----CC----
Confidence 988875432211 33577888888888764333221 12111 1122111100 00
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCC
Q 013204 186 STRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIK 265 (447)
Q Consensus 186 ~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~ 265 (447)
++++++++. +++++|.++.+++..|.+.| +++|.++|+++|+++++|-+|+ .|.. . ++.....
T Consensus 153 ----~~~~~~~i~----~~t~lv~~~~v~~~tG~~~p----i~~i~~~~~~~g~~~~vD~~q~-~g~~--~--id~~~~~ 215 (405)
T d1jf9a_ 153 ----LETLPTLFD----EKTRLLAITHVSNVLGTENP----LAEMITLAHQHGAKVLVDGAQA-VMHH--P--VDVQALD 215 (405)
T ss_dssp ----GGGHHHHCC----TTEEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTT-TTTS--C--CCHHHHT
T ss_pred ----HHHHHHhcc----CCcEEEEEecCCCcccccCc----hHHhhhHHHHcCCeeeccccee-cccc--c--cchhhcC
Confidence 244444433 57889999999999999999 9999999999999999999987 4332 1 2222245
Q ss_pred CCeeeec--ccCCCcccceeEEEeChhHHHHhhhccCC------------------CCccCcCCCCCCcHHHHHHHHHHH
Q 013204 266 PDLVSFA--KALSSAYMPIGAILVSPEVSEVIHSQSNT------------------LGSFSHGFTYSGHPVSCAVAIEAL 325 (447)
Q Consensus 266 ~d~v~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~~~------------------~~~~~~~~t~~~~~~~~~aa~a~l 325 (447)
+|++++| |.+ |+ .++|+++.++++++.+...... ...+. .-+.+..++++..+++
T Consensus 216 ~D~~~~s~hK~~-Gp-~G~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e---~GT~~~~~~~~l~~al 290 (405)
T d1jf9a_ 216 CDFYVFSGHKLY-GP-TGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFE---AGTPNTGGIIGLGAAL 290 (405)
T ss_dssp CSEEEEEGGGTT-SC-SSCEEEEECHHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGC---CSSCCHHHHHHHHHHH
T ss_pred Cceeeccccccc-cC-CCceeeeechhhhcccCcccccccccCccccccccccccchhhhc---CCCCcHHHHHHHHHHH
Confidence 8999876 875 44 5799999999987654321100 00011 1234666777777778
Q ss_pred HHHhh---hcHHHHHHHHHHHHHHhHhhccCCCceeeE--eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCc
Q 013204 326 KIYKE---RNIVEQVNKIAPKFQDGVKAFSDSPIIGEI--RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGM 400 (447)
Q Consensus 326 ~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~--~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 400 (447)
+.+.+ +...++...+.+++.+.++.+ +..... ...+.++.+.++... ...+...|.++||
T Consensus 291 ~~~~~~g~~~i~~~~~~L~~~~~~~l~~~---~~~~~~~~~~r~~ivsf~~~~~~------------~~~~~~~L~~~gI 355 (405)
T d1jf9a_ 291 EYVSALGLNNIAEYEQNLMHYALSQLESV---PDLTLYGPQNRLGVIAFNLGKHH------------AYDVGSFLDNYGI 355 (405)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHTTS---TTEEEESCTTCCSEEEEEETTCC------------HHHHHHHHHHTTE
T ss_pred HHHHHhChHHHHHHHHHHHHHHHhhhhcC---CcccccCCcCcCcEEEEEcCCCC------------HHHHHHHHHHCCc
Confidence 77654 334455555555555555544 322211 223345555554321 4457788889999
Q ss_pred eEEee-------------CCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 401 LVRVS-------------GDNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 401 ~~~~~-------------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
.++.+ .+.+|+|+++.+|++|||+++++|+++++-
T Consensus 356 ~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid~l~~~l~~i~r~ 403 (405)
T d1jf9a_ 356 AVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRL 403 (405)
T ss_dssp ECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEccchhhhhHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 88753 256999999999999999999999888764
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=1.6e-18 Score=166.62 Aligned_cols=340 Identities=17% Similarity=0.173 Sum_probs=191.7
Q ss_pred EEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCC-------hHHHHHHHHHHHhcCcCCCCeEEEeCChhh
Q 013204 34 KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTT-------KPSLDLAKELLEMFTASKMAKVFFTNSGSE 106 (447)
Q Consensus 34 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~l~~~~~~~~~~~v~~~~sGse 106 (447)
.|+|..++ |..+|.++++|.+.+.+...+.......+ +...+..+++++++ +.++++|.|++|+|+
T Consensus 4 iYlD~aa~------~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~l-g~~~~~I~~~~~~t~ 76 (391)
T d1p3wa_ 4 IYLDYSAT------TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLV-GADPREIVFTSGATE 76 (391)
T ss_dssp EECBTTTC------CCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHH-TCCGGGEEEESSHHH
T ss_pred EEeeCccc------cCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHc-CCCCCcEEEECCHHH
Confidence 47886543 46799999999998764322211111122 22334556777776 467789999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhh--cccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhH
Q 013204 107 ANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAA--SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEE 184 (447)
Q Consensus 107 A~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (447)
++..++..+...... .++.|++.+..|+....... ...|.. +..++......
T Consensus 77 ~l~~~~~~~~~~~~~----~gd~Vv~~~~~~~s~~~~~~~~~~~G~~------------v~~v~~~~~~~---------- 130 (391)
T d1p3wa_ 77 SDNLAIKGAANFYQK----KGKHIITSKTEHKAVLDTCRQLEREGFE------------VTYLAPQRNGI---------- 130 (391)
T ss_dssp HHHHHHHHHHHHHGG----GCCEEEEETTSCHHHHHHHHHHHHTTCE------------EEEECCCTTSC----------
T ss_pred HHHHHHhhhhhhhcC----CCCEEEEeccccchHHHHHHHHHHcCCE------------EEEeCCCCCCe----------
Confidence 999998866433222 23688888877766532221 112211 11222211100
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCC
Q 013204 185 YSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSI 264 (447)
Q Consensus 185 ~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~ 264 (447)
.+++++++.+. +++++|+++.+++.+|.+.| +++|.++|++||+++++|++|+ +|.. + .+....
T Consensus 131 ---~d~~~~~~~i~----~~T~lv~is~~~n~tG~~~~----~~~I~~~~~~~~~~~ivD~~~~-~g~~--~--~d~~~~ 194 (391)
T d1p3wa_ 131 ---IDLKELEAAMR----DDTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQS-VGKL--P--IDLSQL 194 (391)
T ss_dssp ---CCHHHHHHHCC----TTEEEEECCSBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTT-BTTB--C--CCTTTS
T ss_pred ---EcHHHHHHhCC----CCcEEEEEECCCCCCeeECC----HHHHHHHhccCCcEEEEeeccc-cCCc--c--ccchhc
Confidence 01355665553 47889999999999998888 9999999999999999999997 5432 2 222334
Q ss_pred CCCeeeec--ccCCCcccceeEEEeChhHHHHhhhccCCCCcc-Cc-CCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHH
Q 013204 265 KPDLVSFA--KALSSAYMPIGAILVSPEVSEVIHSQSNTLGSF-SH-GFTYSGHPVSCAVAIEALKIYK--ERNIVEQVN 338 (447)
Q Consensus 265 ~~d~v~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~-~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~ 338 (447)
.+|+++++ |.+ |+ .++|+++.+++........ ..+.. .. ......+.....+....++... .....++++
T Consensus 195 ~~D~~~~s~~k~~-g~-~g~g~~~~~~~~~~~~~~~--~~gg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 270 (391)
T d1p3wa_ 195 KVDLMSFSGHKIY-GP-KGIGALYVRRKPRVRIEAQ--MHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLR 270 (391)
T ss_dssp CCSEEEEESTTTT-SC-SSCEEEEECBTTBCCCCCS--SCSSCTTTTTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccc-CC-CceEEEEEecchhcccCCc--ccCCccccCcccCcchhhhhhhhhhhhhHHHHHhhHHHHHHH
Confidence 57887654 554 33 5678899888765444321 01100 00 0111222222222222222221 122345666
Q ss_pred HHHHHHHHhHhhccCCCceeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCc----eEEe---------
Q 013204 339 KIAPKFQDGVKAFSDSPIIGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGM----LVRV--------- 404 (447)
Q Consensus 339 ~~~~~l~~~L~~l~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi----~~~~--------- 404 (447)
++..++.+.|..+....+.... .....+..+.+.... ...+...+.+.++ .+.+
T Consensus 271 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~i~v~~G~~c~~~~~~~~~~l 338 (391)
T d1p3wa_ 271 GLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVE------------GESLIMALKDLAVSSGSACTSASLEPSYVL 338 (391)
T ss_dssp HHHHHHHHTTTTSTTEEECSCTTTSCTTEEEEEETTSC------------HHHHHHHTTTEECBCCCC------CCCHHH
T ss_pred HHHHHHHHHHHhhcCeeecccccccCceEEEEEeCCCC------------hHHHHHHhCCCEEEccccccCCccchhHHH
Confidence 6667777777655211110000 111122222222211 2334444432111 1110
Q ss_pred ---------eCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 405 ---------SGDNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 405 ---------~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
..+.||+++++.+|++||+++++.|+++++++|+
T Consensus 339 ~~~g~~~~~~~g~iRiS~~~~nt~edid~l~~~l~~~l~~lr~ 381 (391)
T d1p3wa_ 339 RALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRD 381 (391)
T ss_dssp HHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCccccCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1146999999999999999999999999999986
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.83 E-value=1.8e-18 Score=168.41 Aligned_cols=310 Identities=12% Similarity=0.096 Sum_probs=178.0
Q ss_pred CChHHHHHHHHHHHhcC---cCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCc
Q 013204 75 TTKPSLDLAKELLEMFT---ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLP 151 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~---~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~ 151 (447)
..+....+++.+.+.+. +.++++|++++|+++|+..+++... .+++.|++.+|.|++.........+..
T Consensus 86 ~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~--------~pGd~Vlv~~P~y~~~~~~~~~~~g~~ 157 (431)
T d1m7ya_ 86 LPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLA--------DPGEAVLIPTPYYPGFDRDLKWRTGVE 157 (431)
T ss_dssp CHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHTTTTTCCE
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhc--------CCCCEEEEeCCCchhHHHHHHHhcCce
Confidence 44455566666666543 2357899999999999999999763 334789999999987754443333322
Q ss_pred cccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHh---hCCCcEEEEEEccccCCCCCccCChhHHH
Q 013204 152 ALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILK---EGPETIAAFIAEPVIGAGGVIPPPATYFE 228 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~---~~~~~~a~vi~epv~~~~G~~~~~~~~l~ 228 (447)
.. .+++.....+.. + .+.+++.+.. ........++++|.|++| ...+.+.++
T Consensus 158 ~v------------~v~~~~~~~~~l---~--------~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG--~~~s~~~l~ 212 (431)
T d1m7ya_ 158 IV------------PIHCTSSNGFQI---T--------ETALEEAYQEAEKRNLRVKGVLVTNPSNPLG--TTMTRNELY 212 (431)
T ss_dssp EE------------EEECCGGGTSCC---C--------HHHHHHHHHHHHHTTCCEEEEEEESSCTTTC--CCCCHHHHH
T ss_pred ec------------cccccchhcccc---c--------HHHhhhhhhhhhhccCcceEEEecCcccccc--ccccccccc
Confidence 11 111111100000 1 2444444432 223334455566666655 566889999
Q ss_pred HHHHHHHhcCCEEEEehhhcCCCccccccc-c-cc---CCC------CCCee---eecccCCCcccceeEEEeChhHHHH
Q 013204 229 KVQAVVKKYDILFIADEVICAFGRLGTMFG-C-DK---YSI------KPDLV---SFAKALSSAYMPIGAILVSPEVSEV 294 (447)
Q Consensus 229 ~l~~l~~~~g~~li~DEv~~g~g~~g~~~~-~-~~---~~~------~~d~v---~~sK~l~gg~~~~g~~~~~~~~~~~ 294 (447)
+|.++|++||+++|.||+|..+...+..+. . +. ... ...++ ++||.++.+++++|+++++++++..
T Consensus 213 ~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~i~~ 292 (431)
T d1m7ya_ 213 LLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVA 292 (431)
T ss_dssp HHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHH
T ss_pred cccccccccCcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccchhhhHH
Confidence 999999999999999999987755543221 0 00 011 01122 5899998555999999998876544
Q ss_pred hhhccCCCCccCcCCCCCCcHHHHHHHHHHHH---HHh--hhcHHHHHHHHHHHHHHhHhhccCCCceeeEeee-eeEEE
Q 013204 295 IHSQSNTLGSFSHGFTYSGHPVSCAVAIEALK---IYK--ERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGT-GLILG 368 (447)
Q Consensus 295 ~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~---~~~--~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~-g~~~~ 368 (447)
.... .. .....+.....++.+.+. ..+ ..+....++++.+.+.+.|++. + +...++. |.+++
T Consensus 293 ~~~~-------~~-~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---g-i~~~~p~gg~f~w 360 (431)
T d1m7ya_ 293 AATK-------MS-SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS---G-ISCLNGNAGLFCW 360 (431)
T ss_dssp HHHH-------HG-GGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---T-CEECCCCSSSEEE
T ss_pred HHHH-------Hh-ccccccccccchhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhcC---C-cEEecCCceeEEE
Confidence 3321 11 111222222222222222 111 1122334444445555555442 2 2233344 56677
Q ss_pred EEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEeeC-------CEEEEecCCC-CCHHHHHHHHHHHHHHHHHH
Q 013204 369 TEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVSG-------DNIMMSPPFI-MSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 369 i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~g-------~~iR~~~~~~-~t~e~i~~~~~~l~~~l~~~ 436 (447)
+++........ ......++++|+ +.||++.|+. +.+|++ +. .++++|++++++|++++++.
T Consensus 361 ~~l~~~~~~~~-----~~~~~~l~~~ll~~~gV~v~PG~~F~~~~~~~~Ri~--~a~~~e~~l~~al~rL~~~l~~~ 430 (431)
T d1m7ya_ 361 VDMRHLLRSNT-----FEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVC--FANLPERTLDLAMQRLKAFVGEY 430 (431)
T ss_dssp EECGGGSSSSS-----HHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEE--CSSSCHHHHHHHHHHHHHHHHHH
T ss_pred EECccccccCc-----ccCHHHHHHHHHHHCCEEEEeccccCCCCCCEEEEE--eCcCCHHHHHHHHHHHHHHHHHh
Confidence 77764321110 011334666766 5699998852 569999 44 57889999999999998763
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.83 E-value=7.4e-19 Score=171.00 Aligned_cols=309 Identities=13% Similarity=0.097 Sum_probs=178.5
Q ss_pred CChHHHHHHHHHHHhcCc---CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCc
Q 013204 75 TTKPSLDLAKELLEMFTA---SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLP 151 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~---~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~ 151 (447)
..+....+++.+.+.+.. .+++++++++|+++|+..+++... ..++.|++.+|+|++.........|..
T Consensus 85 ~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~--------~~Gd~Vlv~~P~y~~~~~~~~~~~g~~ 156 (428)
T d1iaya_ 85 LPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLA--------DPGDAFLVPSPYYPAFNRDLRWRTGVQ 156 (428)
T ss_dssp CHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHC--------CTTCEEEEESSCCTTHHHHTTTTTCCE
T ss_pred hHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhC--------CCCCEEEEccCCchHHHHHHHHhcCCe
Confidence 445555666666655432 357799999999999999998763 335789999999988754333223322
Q ss_pred cccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHH---HhhCCCcEEEEEEccccCCCCCccCChhHHH
Q 013204 152 ALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLI---LKEGPETIAAFIAEPVIGAGGVIPPPATYFE 228 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l---~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~ 228 (447)
.. .+++.....+. .+ .+++++.+ ....++..+.++++|.|++| .+.+.+.++
T Consensus 157 ~v------------~v~~~~~~~~~---~d--------~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG--~~~s~~~~~ 211 (428)
T d1iaya_ 157 LI------------PIHCESSNNFK---IT--------SKAVKEAYENAQKSNIKVKGLILTNPSNPLG--TTLDKDTLK 211 (428)
T ss_dssp EE------------EECCCTTTTTC---CC--------HHHHHHHHHHHHHTTCCEEEEEEESSCTTTC--CCCCHHHHH
T ss_pred EE------------Eeecccccccc---cc--------cccccchhhhhhccCCCceEEEEccCCCccc--ccccccccc
Confidence 11 11111100000 11 13333332 22334444566666766665 567889999
Q ss_pred HHHHHHHhcCCEEEEehhhcCCCccccccc-c-cc------CCCCCC----eeeecccCCCcccceeEEEeC-hhHHHHh
Q 013204 229 KVQAVVKKYDILFIADEVICAFGRLGTMFG-C-DK------YSIKPD----LVSFAKALSSAYMPIGAILVS-PEVSEVI 295 (447)
Q Consensus 229 ~l~~l~~~~g~~li~DEv~~g~g~~g~~~~-~-~~------~~~~~d----~v~~sK~l~gg~~~~g~~~~~-~~~~~~~ 295 (447)
+|.++|++||+++|.||+|..+...+..+. + +. ....+| +-++||.++.+++++|++++. +.+.+.+
T Consensus 212 ~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~~l~~~~ 291 (428)
T d1iaya_ 212 SVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCA 291 (428)
T ss_dssp HHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHH
T ss_pred hhheeeccCcEEEEecccccccccCcccccccccccchhhccccccceEEEEecCCCcccCCCcccccccccccchhhhh
Confidence 999999999999999999997755554321 1 10 111223 225799887655999999985 5566665
Q ss_pred hhccCCCCccCcCCCCCCcHHHHHHHHHHH---HHHhh--hcHHHHHHHHHHHHHHhHhhccCCCceeeEeee-eeEEEE
Q 013204 296 HSQSNTLGSFSHGFTYSGHPVSCAVAIEAL---KIYKE--RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGT-GLILGT 369 (447)
Q Consensus 296 ~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l---~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~-g~~~~i 369 (447)
... .. ....+.....++.+.+ +.++. .+..+.++++.+.+.+.|+.. +..+ ..+. |.++++
T Consensus 292 ~~~-------~~--~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~-gi~~---~~p~gg~f~w~ 358 (428)
T d1iaya_ 292 RKM-------SS--FGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIKC---LKNNAGLFCWM 358 (428)
T ss_dssp HHH-------HT--TSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCB---CCCSSSSEEEE
T ss_pred hhh-------hc--ccccccccccchhhhhhhhccccccccccccccchhHHHHHHHHHhC-CCEE---ecCCcceEEEE
Confidence 421 11 1112222222222222 11111 223345555666666666654 2222 2233 566777
Q ss_pred EeecCCCCCCCCCCCcchHHHHHHHHHH-cCceEEee-------CCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 370 EFADNKSPNEPFPPEWGIGAYFGAQCEK-HGMLVRVS-------GDNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~-------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
++........ ......++++|++ .||++.|+ .+.+|++.. ..++++|++++++|++++.+
T Consensus 359 ~l~~~~~~~~-----~~~~~~l~~~Ll~~~gV~v~PG~~F~~~~~g~~Ris~a-~~~~~~l~~al~Rl~~~l~~ 426 (428)
T d1iaya_ 359 DLRPLLREST-----FDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFA-NMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp ECGGGCSSSS-----HHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECS-SSCHHHHHHHHHHHHHHHHT
T ss_pred ECccccccCC-----CCCHHHHHHHHHHhCCEEEEcchhcCCCCCCEEEEEeC-CCCHHHHHHHHHHHHHHHhh
Confidence 7764321110 0012346677765 59999875 256999942 35778899999999998854
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.83 E-value=2.7e-18 Score=165.90 Aligned_cols=337 Identities=13% Similarity=0.100 Sum_probs=207.7
Q ss_pred EEEecCCccccccCCCCCHHHHHHHHHHHhcCCcc-cccC---c-CCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHH
Q 013204 34 KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY-HSFW---N-RTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEAN 108 (447)
Q Consensus 34 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~~~---~-~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~ 108 (447)
.|||..++ |.-++.+++++.+.+++.... ++.. + ...+...+..+.+++++.....+.++|++++++++
T Consensus 24 iYld~a~~------~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~ 97 (408)
T d1t3ia_ 24 VYLDNAAT------SQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAI 97 (408)
T ss_dssp EECBTTTC------CCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHH
T ss_pred EEeeCccc------cCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHHHH
Confidence 58887544 456899999999988764221 1110 0 01133344556777777433457899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhh---cccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHH
Q 013204 109 DTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAA---SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEY 185 (447)
Q Consensus 109 ~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (447)
..++........ +.+++|++.+..|++...... ...|... ..++.+.... .
T Consensus 98 n~~~~~~~~~~~----~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v------------~~~~~~~~~~-----~----- 151 (408)
T d1t3ia_ 98 NLVAYSWGMNNL----KAGDEIITTVMEHHSNLVPWQMVAAKTGAVL------------KFVQLDEQES-----F----- 151 (408)
T ss_dssp HHHHHHTHHHHC----CTTCEEEEETTCCGGGTHHHHHHHHHHCCEE------------EEECBCTTSS-----B-----
T ss_pred HHHHhhcccccc----CCCCEEEeecccchhhhhhhhhhhhccCceE------------eeeecccccc-----c-----
Confidence 887775322211 234667776666665432221 1112111 1111111100 0
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCC
Q 013204 186 STRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIK 265 (447)
Q Consensus 186 ~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~ 265 (447)
+.+++++.+. +++++|.+..+++..|.+.| +++|.++|+++|+++++|-+|+ +|.. + ++.....
T Consensus 152 ---~~~~l~~~~~----~~t~lv~i~~~~~~tG~~~p----~~~i~~~~~~~g~~~ivDa~q~-~g~~--~--id~~~~~ 215 (408)
T d1t3ia_ 152 ---DLEHFKTLLS----EKTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQS-APHY--P--LDVQLID 215 (408)
T ss_dssp ---CHHHHHHHCC----TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTS--C--CCHHHHT
T ss_pred ---cHHHhhhccC----CCceEEEEecccccccccCc----HHHHhhhhhccCceeeecccee-cccc--c--ccccccC
Confidence 0255555442 57889999999999999998 9999999999999999999987 5433 1 2222345
Q ss_pred CCeeeec--ccCCCcccceeEEEeChhHHHHhhhccC-----------------CCCccCcCCCCCCcHHHHHHHHHHHH
Q 013204 266 PDLVSFA--KALSSAYMPIGAILVSPEVSEVIHSQSN-----------------TLGSFSHGFTYSGHPVSCAVAIEALK 326 (447)
Q Consensus 266 ~d~v~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~t~~~~~~~~~aa~a~l~ 326 (447)
+|++++| |. .|+ .++|+++.+++.......... ....+. +.+.+..+++++.++++
T Consensus 216 ~D~~~~s~hK~-~gp-~G~g~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e---~Gt~~~~~~~~l~~al~ 290 (408)
T d1t3ia_ 216 CDWLVASGHKM-CAP-TGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFE---AGTPAIAEAIALGAAVD 290 (408)
T ss_dssp CSEEEEEGGGT-TSC-TTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGC---CSSCCHHHHHHHHHHHH
T ss_pred CceEEeccccc-cCC-CCccccccchhhhhcCCceecCCcccccccccccccCCchhhhc---CCcHHHHHHHHHHHHHH
Confidence 7999887 65 454 678999999998765431100 000111 22345566666667777
Q ss_pred HHhh---hcHHHHHHHHHHHHHHhHhhccCCCceeeE---eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCc
Q 013204 327 IYKE---RNIVEQVNKIAPKFQDGVKAFSDSPIIGEI---RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGM 400 (447)
Q Consensus 327 ~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~---~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 400 (447)
.+.+ +++.++...+.+++.+.+.++....+.... ...+.++.+.+.... ...+...|.++||
T Consensus 291 ~~~~~g~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~iv~f~~~~~~------------~~~v~~~L~~~gI 358 (408)
T d1t3ia_ 291 YLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGLH------------ASDVATMVDQDGI 358 (408)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTBC------------HHHHHHHHHTTTE
T ss_pred HHHHcCHHHHHHHHHHHHhHHhhhhccCccccccCCCccccCcceEEEEEeCCCC------------HHHHHHHHhhCCc
Confidence 6654 445566667777777766655222111111 122344555554322 4567788889999
Q ss_pred eEEee-------------CCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 401 LVRVS-------------GDNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 401 ~~~~~-------------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
.++.+ .+.+||+++..+|++|||++++.|+++++.
T Consensus 359 ~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt~~did~li~~L~~~~~~ 406 (408)
T d1t3ia_ 359 AIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRF 406 (408)
T ss_dssp ECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEecCcccccHHHHhhcCCccEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 87642 246999999999999999999999999875
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=9e-19 Score=168.26 Aligned_cols=327 Identities=14% Similarity=0.104 Sum_probs=198.2
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcce
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 129 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~ 129 (447)
-+|+|++||.. ....|+. ....+...+..+.+++++.-.+...++|+.|||+|++.++.... .++++
T Consensus 30 ~~~~Vl~am~~----~~i~HRs-~~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l~--------~~~~~ 96 (388)
T d1h0ca_ 30 LPPRIMAAGGL----QMIGSMS-KDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVL--------EPGDS 96 (388)
T ss_dssp CCHHHHHHHTC----CCCCTTS-HHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHC--------CSSCC
T ss_pred CCHHHHHHhCc----CCCCCCC-HHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHhh--------ccCCc
Confidence 46777777642 1122221 11234456677778777743233468899999999999999764 34577
Q ss_pred EEEEcCCCccchhhhhcc-cCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEE
Q 013204 130 FIARQKSYHGSTLIAASL-SGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAF 208 (447)
Q Consensus 130 vi~~~~~yhg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~v 208 (447)
+++....+++........ .+..... +..+. ....+ .+++++.+.. .++.++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~-------~~~~~------~~~~~~~~~~---~~~~~v 148 (388)
T d1h0ca_ 97 FLVGANGIWGQRAVDIGERIGARVHP------------MTKDP-------GGHYT------LQEVEEGLAQ---HKPVLL 148 (388)
T ss_dssp EEECBSSHHHHHHHHHHHHHC--CBC------------CBCCT-------TCCCC------HHHHHHHHHH---HCCSEE
T ss_pred eeeecccceeeeeccccccccccccc------------cccCC-------ccccc------hHHHHHHhcc---CCcceE
Confidence 777776665543222211 1111000 00000 00000 1444444443 234577
Q ss_pred EEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec--ccCCCcccceeEEE
Q 013204 209 IAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMPIGAIL 286 (447)
Q Consensus 209 i~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l~gg~~~~g~~~ 286 (447)
.+..+.+.+|.+.| +++|.++|++||+++++|.+|+ +|.. . ++......|++++| |.+++. .++|+++
T Consensus 149 ~~~~~~n~tG~i~p----i~~i~~~~~~~g~~~~vD~~qs-~g~~--~--~d~~~~~~D~~~~s~~K~~~gp-~g~~~~~ 218 (388)
T d1h0ca_ 149 FLTHGESSTGVLQP----LDGFGELCHRYKCLLLVDSVAS-LGGT--P--LYMDRQGIDILYSGSQKALNAP-PGTSLIS 218 (388)
T ss_dssp EEESEETTTTEECC----CTTHHHHHHTTTCEEEEECTTT-TTTS--C--CCTTTTTCSEEEEESSSTTCCC-TTCEEEE
T ss_pred EEeeeeeccccccC----HHHHHHHhhcccccceeccccc-cccc--c--ccccccccceecccccccccCC-CceEEEe
Confidence 77888888888888 9999999999999999999997 4432 2 23333456888776 788776 5778888
Q ss_pred eChhHHHHhhhccCCCCc----------------cCcCCCCCCcHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHh
Q 013204 287 VSPEVSEVIHSQSNTLGS----------------FSHGFTYSGHPVSCAVAIEALKIYKER---NIVEQVNKIAPKFQDG 347 (447)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~----------------~~~~~t~~~~~~~~~aa~a~l~~~~~~---~~~~~~~~~~~~l~~~ 347 (447)
.++..++.+......... .......+++..++.+..++++.+.+. ...++..++.+++++.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~ 298 (388)
T d1h0ca_ 219 FSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGR 298 (388)
T ss_dssp ECHHHHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHhhhhccccccccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHH
Confidence 998887766542211110 001112234555666677777766553 3445666677777888
Q ss_pred HhhccCCCceee-EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc-CceEEee-----CCEEEEe-cCCCCCH
Q 013204 348 VKAFSDSPIIGE-IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH-GMLVRVS-----GDNIMMS-PPFIMSP 419 (447)
Q Consensus 348 L~~l~~~~~~~~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~-----g~~iR~~-~~~~~t~ 419 (447)
++.+.......+ -.....++.+.+++.. ....+...|+++ ||.++.+ ++.+|++ ..+++|+
T Consensus 299 ~~~~g~~~~~~~~~~rs~~i~~~~~p~~~-----------~~~~~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~~t~ 367 (388)
T d1h0ca_ 299 LQALGLQLFVKDPALRLPTVTTVAVPAGY-----------DWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATR 367 (388)
T ss_dssp HHHHTCCBSSCSGGGBCTTEEEEECCTTC-----------CHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSH
T ss_pred HhhcCcccccCCHHHcCCeEEEEECCCCC-----------CHHHHHHHHHhcCCEEEeCCchhhcCCEEEEeCCCCCCCH
Confidence 777622222211 1112234455554321 145677777665 9888754 3679999 5678899
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013204 420 EEVDELISKYGKALKATEE 438 (447)
Q Consensus 420 e~i~~~~~~l~~~l~~~~~ 438 (447)
||||+++++|+++|+++++
T Consensus 368 edid~li~aL~~~L~~l~k 386 (388)
T d1h0ca_ 368 ENVDRVTEALRAALQHCPK 386 (388)
T ss_dssp HHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 9999999999999998765
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.80 E-value=1e-17 Score=159.22 Aligned_cols=334 Identities=15% Similarity=0.167 Sum_probs=182.9
Q ss_pred CCCCHHHHHHHHHHHhcCCc---ccc--c-CcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHh
Q 013204 48 GGSEPRLVAAATAQLNTLPF---YHS--F-WNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNA 121 (447)
Q Consensus 48 G~~~p~v~~a~~~~~~~~~~---~~~--~-~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~ 121 (447)
|.-+|++++|+.+....... ... . .....+....+++++++++ +.+++++++||++|+..++....
T Consensus 12 ~~l~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~---g~e~~~~t~g~t~a~~~~~~al~----- 83 (364)
T d2e7ja1 12 GKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFL---GCDVARVTNGAREAKFAVMHSLA----- 83 (364)
T ss_dssp CCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHT---TSSEEEEESSHHHHHHHHHHHHC-----
T ss_pred CcCCHHHHHHHHHHhcCCchhccccccccccccChHHHHHHHHHHHHHh---CcCEEEEECcHHHHHHHHHHHHh-----
Confidence 34578888888764332110 000 0 0011234566888888886 56799999999999999998663
Q ss_pred cCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhC
Q 013204 122 LGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEG 201 (447)
Q Consensus 122 ~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~ 201 (447)
.+++.||+.+++|+....... ..|... ..+|..+...+ . .+++++++.+....
T Consensus 84 ---~~gd~Vi~~~~~h~s~~~~~~-~~g~~v------------~~v~~~~~~~~---~--------i~~~~l~~~i~~~~ 136 (364)
T d2e7ja1 84 ---KKDAWVVMDENCHYSSYVAAE-RAGLNI------------ALVPKTDYPDY---A--------ITPENFAQTIEETK 136 (364)
T ss_dssp ---CTTCEEEEETTCCHHHHHHHH-HTTCEE------------EEECCCCTTTC---C--------CCHHHHHHHHHHHT
T ss_pred ---CCCcEEEeecccccccchHHH-hccceE------------EEeeecccccc---c--------cCHHHHHhhhhhhc
Confidence 334677777666654433332 233221 11111110000 0 11477888886543
Q ss_pred -CCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec--ccCCCc
Q 013204 202 -PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSA 278 (447)
Q Consensus 202 -~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l~gg 278 (447)
...+++|+++.++++.|.+.+ +++|.++|++||+++|+||+|+ +|..+. .... ...|++++| |.++++
T Consensus 137 k~~~~~lv~i~~~~n~tG~~~~----l~~I~~ia~~~~i~livD~a~~-~g~~~~--~~~~--~g~D~~~~S~~K~~~~~ 207 (364)
T d2e7ja1 137 KRGEVVLALITYPDGNYGNLPD----VKKIAKVCSEYDVPLLVNGAYA-IGRMPV--SLKE--IGADFIVGSGHKSMAAS 207 (364)
T ss_dssp TTSCEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTT-BTTBCC--CHHH--HTCSEEEEEHHHHSSCC
T ss_pred ccCCceEEEeecCCCCCceeec----chhheeccccccchhhccccch-hhhhhh--cccc--cccceeeeccccccCCC
Confidence 346778888888888888877 9999999999999999999996 544321 1111 236888765 999876
Q ss_pred ccceeEEEeChhHHHHhhhccCCCCc--c-CcCCCCCCcHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHhHhhccC
Q 013204 279 YMPIGAILVSPEVSEVIHSQSNTLGS--F-SHGFTYSGHPVSCAVAIEALKIYKE--RNIVEQVNKIAPKFQDGVKAFSD 353 (447)
Q Consensus 279 ~~~~g~~~~~~~~~~~~~~~~~~~~~--~-~~~~t~~~~~~~~~aa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~ 353 (447)
.++|+++.++++++.+......... . ....+... ....+..++++.+.+ +.+.+. .++.+++.+.|+++ .
T Consensus 208 -g~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~-g 282 (364)
T d2e7ja1 208 -GPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARG--ATIITLMASFPHVRERIKRWDEE-VEKARRFAAEMEKL-G 282 (364)
T ss_dssp -SSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCS--HHHHHHHHHHHHHHHHGGGHHHH-HHHHHHHHHHHHHT-T
T ss_pred -CCEEEEEECHHHHHHHHhhccccCcccccccccccch--hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHc-C
Confidence 3789999999887766432211100 0 00111111 222333344443322 223223 34556666777665 1
Q ss_pred CCceee-EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC--CEEEEecCCCCCHHHHHHHHHHHH
Q 013204 354 SPIIGE-IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--DNIMMSPPFIMSPEEVDELISKYG 430 (447)
Q Consensus 354 ~~~~~~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g--~~iR~~~~~~~t~e~i~~~~~~l~ 430 (447)
...... ..... ...+......... .........+...+...|+.....+ ..+|++ .+..|+|+|++++++|+
T Consensus 283 ~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~-~~~~t~edid~~~~~l~ 357 (364)
T d2e7ja1 283 IKQLGDNPHNHD-LMFFHAEVLYEIS---KKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLS-TYGLSDEEVDYVLNAFK 357 (364)
T ss_dssp CEEESSSSCCSS-EEEEECHHHHHHH---HHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEE-CTTCCHHHHHHHHHHHH
T ss_pred CeecCCCCCCcc-eEEEeccchHHHH---HHhhccchHHHHHHHhcCCceecCCCcceEEEe-ccCCCHHHHHHHHHHHH
Confidence 111100 01111 1111211100000 0000012234556777777654333 446666 35689999999999999
Q ss_pred HHHHH
Q 013204 431 KALKA 435 (447)
Q Consensus 431 ~~l~~ 435 (447)
+++++
T Consensus 358 ei~~~ 362 (364)
T d2e7ja1 358 EIIEK 362 (364)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99876
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=6.6e-18 Score=160.04 Aligned_cols=284 Identities=14% Similarity=0.181 Sum_probs=173.5
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 154 (447)
|.....+|.+++++.+ +.++++|++++|+++|+..+++... .+++..|++..|+|..+.......+. ...
T Consensus 54 Pd~~~~~Lr~~ia~~~-gv~pe~I~it~Gs~eai~~~~~~~~-------~pgd~~Vl~~~P~y~~~~~~~~~~g~-~v~- 123 (354)
T d1fg7a_ 54 PECQPKAVIENYAQYA-GVKPEQVLVSRGADEGIELLIRAFC-------EPGKDAILYCPPTYGMYSVSAETIGV-ECR- 123 (354)
T ss_dssp CCSSCHHHHHHHHHHH-TSCGGGEEEESHHHHHHHHHHHHHC-------CTTTCEEEECSSSCTHHHHHHHHHTC-EEE-
T ss_pred CCCcHHHHHHHHHHHh-CCChHHeeeccCchHHHHHHHHHhh-------ccccccccccccccccchhhhhccCc-eee-
Confidence 3333457888888887 4678899999999999999999763 24445678788999777654444332 111
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
.++..+.|. .+ ++++++.+ .++.+|++.+.++.+|.+ .+.+.++.+.+.+
T Consensus 124 -----------~~~~~~~~~-----~d--------~~~l~~~~-----~~~~~v~~~~pnNPtG~~-~~~~~~~~~~~~~ 173 (354)
T d1fg7a_ 124 -----------TVPTLDNWQ-----LD--------LQGISDKL-----DGVKVVYVCSPNNPTGQL-INPQDFRTLLELT 173 (354)
T ss_dssp -----------ECCCCTTSC-----CC--------HHHHHTSC-----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHH
T ss_pred -----------ccccccccc-----cc--------hhhhhhcc-----cccceeeccCCCccceeE-eeecccccccccc
Confidence 111111111 00 23343322 245555555555555544 4677788888877
Q ss_pred HhcCCEEEEehhhcCCCccccccccccCCCCCCee---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCC
Q 013204 235 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTY 311 (447)
Q Consensus 235 ~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 311 (447)
+ ++.++|+||.+..|...... .......+.++ +|||.++.+++|+|++++++++++.+... . ..+
T Consensus 174 ~-~~~~~iidd~~~~f~~~~~~--~~~~~~~~~~iv~~S~SK~~~laGlRiGy~i~~~~~i~~l~~~-------~--~~~ 241 (354)
T d1fg7a_ 174 R-GKAIVVADEAYIEFCPQASL--AGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKV-------I--APY 241 (354)
T ss_dssp T-TTCEEEEECTTGGGSGGGCS--GGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHHHH-------S--CSS
T ss_pred c-ccccccccccchhhcccccc--chhhcccccceEEeCCccccCCCccccccccccchhhhhhhhh-------c--Ccc
Confidence 6 56777778777666433221 11222233433 68999885459999999999999888642 1 233
Q ss_pred CCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHhHhhccCCCceeeE-eeeeeEEEEEeecCCCCCCCCCCCcch
Q 013204 312 SGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQDGVKAFSDSPIIGEI-RGTGLILGTEFADNKSPNEPFPPEWGI 387 (447)
Q Consensus 312 ~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~ 387 (447)
..+..++.++.+++..-.. ....+++.+.++++.+.+.++ +....+ ++.+.++.+.+.+
T Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~---~~~~~~~p~~~~f~~~~~~~-------------- 304 (354)
T d1fg7a_ 242 PLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEI---PCVEQVFDSETNYILARFKA-------------- 304 (354)
T ss_dssp CSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTEEEECCCSSSEEEEEETT--------------
T ss_pred chhhHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHhC---CCcceeCCCCceEEEEeCCC--------------
Confidence 4444444444444322111 122344555556666666655 333333 4456677777643
Q ss_pred HHHHHHHHHHcCceEEeeC------CEEEEecCCCCCHHHHHHHHHHHH
Q 013204 388 GAYFGAQCEKHGMLVRVSG------DNIMMSPPFIMSPEEVDELISKYG 430 (447)
Q Consensus 388 ~~~~~~~l~~~Gi~~~~~g------~~iR~~~~~~~t~e~i~~~~~~l~ 430 (447)
...+.+.|+++||++++++ +.+|++ ..+++++++++++|+
T Consensus 305 ~~~~~~~L~~~gIlvr~~~~~~~~~~~lRis---igt~ee~~~~l~aLk 350 (354)
T d1fg7a_ 305 SSAVFKSLWDQGIILRDQNKQPSLSGCLRIT---VGTREESQRVIDALR 350 (354)
T ss_dssp HHHHHHHHHHTTEECEECTTSTTCTTEEEEE---CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcEEecCCCCCCCCCEEEEE---eCCHHHHHHHHHHHh
Confidence 3458889999999998753 679999 358888888888775
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.79 E-value=1.4e-18 Score=161.84 Aligned_cols=322 Identities=11% Similarity=0.042 Sum_probs=170.7
Q ss_pred ccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCC
Q 013204 45 TALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGR 124 (447)
Q Consensus 45 ~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~ 124 (447)
++.| .||+|++|+.++....... .++.+...++++++++++. .+.++|+|++||||||..|+..+.
T Consensus 8 ~~~g-~~P~v~eAl~~~~~~~~~~----y~~~~~~~~lr~~ia~~~g-~~~~~v~~tsggtean~~a~~~~~-------- 73 (340)
T d1svva_ 8 YSVG-MHPKILDLMARDNMTQHAG----YGQDSHCAKAARLIGELLE-RPDADVHFISGGTQTNLIACSLAL-------- 73 (340)
T ss_dssp CSSC-CCHHHHHHHHHHTTCCCCS----TTCSHHHHHHHHHHHHHHT-CTTSEEEEESCHHHHHHHHHHHHC--------
T ss_pred CCCC-CCHHHHHHHHHHhhcCCCC----CCCCHHHHHHHHHHHHHhC-CCcceEEEcCCHHHHHHHHHHHHh--------
Confidence 3445 6999999999876543222 2356677889999999984 456799999999999999998764
Q ss_pred CCcceEEEEcCCCccchhh-hhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHh--hC
Q 013204 125 PNKKKFIARQKSYHGSTLI-AASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILK--EG 201 (447)
Q Consensus 125 ~~~~~vi~~~~~yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~--~~ 201 (447)
.....++.....++..... .....+...... .+.. .... . ++..+.... ..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~-------~~~~-~-------~~~~~~~~~~~~~ 127 (340)
T d1svva_ 74 RPWEAVIATQLGHISTHETGAIEATGHKVVTA-----------PCPD-------GKLR-V-------ADIESALHENRSE 127 (340)
T ss_dssp CTTEEEEEETTSHHHHSSTTHHHHTTCCEEEE-----------CCTT-------SCCC-H-------HHHHHHHHHSCST
T ss_pred hhccccccccccceeeeecccccccceeeeec-----------cccc-------cccc-c-------hhHHHHhhhhhcc
Confidence 3345555555554433211 111111100000 0000 0000 0 111222111 11
Q ss_pred CCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc--ccccccCCCCCCeeeecccCCCcc
Q 013204 202 PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT--MFGCDKYSIKPDLVSFAKALSSAY 279 (447)
Q Consensus 202 ~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~--~~~~~~~~~~~d~v~~sK~l~gg~ 279 (447)
......+++....+++|.+ .+.+.+..+...|+++|+++++|+++.+...... ...........++..+++..+++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (340)
T d1svva_ 128 HMVIPKLVYISNTTEVGTQ-YTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGM 206 (340)
T ss_dssp TSCEEEEEEEESSCTTSCC-CCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCS
T ss_pred cCCcceeeeeccccccccc-ccHHHhhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCcccccc
Confidence 1223344444444444433 4567788899999999999999999874321111 111111111234555555444432
Q ss_pred cceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceee
Q 013204 280 MPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGE 359 (447)
Q Consensus 280 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~ 359 (447)
...+............... ......+........+++.+.++........++...+..+++..|+.+ +..+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~- 279 (340)
T d1svva_ 207 FGEALIILNDALKPNARHL-----IKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEAC-GIRLAW- 279 (340)
T ss_dssp SCEEEEECSGGGCTTHHHH-----HHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSS-
T ss_pred ccccccccchhhhhhhhhh-----cccccCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhcC-CCeeec-
Confidence 3333444444433222211 111223333334444444444332222334566666777777777776 322221
Q ss_pred EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceE----EeeC-CEEEEecCCCCCHHHHHHHHHHHHH
Q 013204 360 IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLV----RVSG-DNIMMSPPFIMSPEEVDELISKYGK 431 (447)
Q Consensus 360 ~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~----~~~g-~~iR~~~~~~~t~e~i~~~~~~l~~ 431 (447)
+..+.++.+.+.. .....|.+++... .+.+ +.+||++++.+|+||||+++++|++
T Consensus 280 -p~~~~~v~~~~~~----------------~~~~~l~~~~~~~~~~~~~~~~~~vR~s~~~~~t~edid~~l~~l~~ 339 (340)
T d1svva_ 280 -PSASNQLFPILEN----------------TMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKR 339 (340)
T ss_dssp -CCSSSEECBEEEH----------------HHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred -CCCceEEEEeCCH----------------HHHHHHHHhhhhhcccccCCCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence 2234444444432 2445566665443 3333 4599999999999999999999986
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.78 E-value=4.5e-18 Score=164.64 Aligned_cols=355 Identities=9% Similarity=0.023 Sum_probs=189.1
Q ss_pred EEecCCccccccCCC--CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc-------CCCCeEEEeCChh
Q 013204 35 YLDSLAGLWCTALGG--SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA-------SKMAKVFFTNSGS 105 (447)
Q Consensus 35 ~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-------~~~~~v~~~~sGs 105 (447)
.+|+.-|...+.-|. ..|.|.+|......+-...+. ..+.....+|.+.+++++.. .+...+..+.+++
T Consensus 32 ~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~--Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (412)
T d1ajsa_ 32 KVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHE--YLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGT 109 (412)
T ss_dssp CEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCC--CCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHH
T ss_pred cEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCCcCCC--CCCCCCCHHHHHHHHHHHhccCCcccccccceeecccchh
Confidence 478876643333342 346777776554443221111 11333344555555554411 1223455677888
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHH
Q 013204 106 EANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEY 185 (447)
Q Consensus 106 eA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (447)
.++..+...+........ ..++.|++.+|+|..+.......++....... +.+... .
T Consensus 110 ~~~~~~~~~l~~~~~~~~-~pGd~Vlv~~P~y~~y~~~~~~~G~~~v~~~~------------~~~~~~-----~----- 166 (412)
T d1ajsa_ 110 GALRIGAEFLARWYNGTN-NKDTPVYVSSPTWENHNGVFTTAGFKDIRSYR------------YWDTEK-----R----- 166 (412)
T ss_dssp HHHHHHHHHHHHHSSSSS-CCCSCEEEEESCCTHHHHHHHHTTCSCEEEEE------------CEETTT-----T-----
T ss_pred hHHHHHHHHHHHHhhhcC-CCCCEEEEeCCcchhhHHHHHHcCCeEEEeec------------cccccc-----c-----
Confidence 888888776543322222 34588999999998876555544433211100 000000 0
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccc---ccc-cc
Q 013204 186 STRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTM---FGC-DK 261 (447)
Q Consensus 186 ~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~---~~~-~~ 261 (447)
..+++.+++.+....+.....+++.|.|++| .+++.+.+++|.++|++||+++|.||+|.++...+.. +.. ..
T Consensus 167 -~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG--~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~ 243 (412)
T d1ajsa_ 167 -GLDLQGFLSDLENAPEFSIFVLHACAHNPTG--TDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYF 243 (412)
T ss_dssp -EECHHHHHHHHHHSCTTCEEEEESSSCTTTC--CCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHH
T ss_pred -cccHHHHHHHHHhccCCcEEEEecCCCCCcC--CCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhh
Confidence 0002445555544444444444445556655 6779999999999999999999999999988655421 111 11
Q ss_pred CCCCC-C--eeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHH------h--h
Q 013204 262 YSIKP-D--LVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIY------K--E 330 (447)
Q Consensus 262 ~~~~~-d--~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~------~--~ 330 (447)
..... . +.++||.++..++++|++++..+..+.+..................+.+++.++.+.+... . -
T Consensus 244 ~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (412)
T d1ajsa_ 244 VSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNV 323 (412)
T ss_dssp HHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred hhhcccccccccccccccCCCCCccccccchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHH
Confidence 11112 2 2357898887669999999876544333210000001111122233445555444443211 0 1
Q ss_pred hcHHHHHHHHHHHHHHhHhhccCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeCCEE
Q 013204 331 RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNI 409 (447)
Q Consensus 331 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g~~i 409 (447)
+...++++++++.+.+.|+++........+... |.|..+.+. .+.+.+.+.++||++.+++
T Consensus 324 ~~~~~~l~~~r~~l~~~L~~~~~~~~~~~i~~~~G~F~~~~ls---------------~~~v~~L~~e~gV~~vpg~--- 385 (412)
T d1ajsa_ 324 KTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLN---------------PKQVEYLINQKHIYLLPSG--- 385 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCC---------------HHHHHHHHHTTCEECCTTS---
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCeeeecCCCeEEEecCCC---------------HHHHHHHHHhCCEEEeCCC---
Confidence 223455666666677777765211111122222 333222111 1223334467799888765
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 410 MMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 410 R~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
||+.. ..++++|+++.++|+++++++
T Consensus 386 Ri~~a-g~~~~~i~~~a~aI~~av~~~ 411 (412)
T d1ajsa_ 386 RINMC-GLTTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp EEEGG-GCCTTTHHHHHHHHHHHHHHC
T ss_pred eEEec-cCCHHHHHHHHHHHHHHHHhc
Confidence 88832 368899999999999999875
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.77 E-value=6.1e-17 Score=153.69 Aligned_cols=301 Identities=14% Similarity=0.168 Sum_probs=177.5
Q ss_pred hHHHHHHHHHHHhcCcCCCCe--EEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhh-cccCCccc
Q 013204 77 KPSLDLAKELLEMFTASKMAK--VFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAA-SLSGLPAL 153 (447)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~~--v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~-~~~~~~~~ 153 (447)
+...+..+.+++++. .+.++ ++|+.|||++++.++.... ..++.+++....+++...... ...+....
T Consensus 33 ~~~~~~r~~l~~l~~-~~~~~~~i~~t~s~T~~~~~~~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (361)
T d1m32a_ 33 GVVEQIRQQLTALAT-ASEGYTSVLLQGSGSYAVEAVLGSAL--------GPQDKVLIVSNGAYGARMVEMAGLMGIAHH 103 (361)
T ss_dssp TTHHHHHHHHHHHHC-SSSSEEEEEEESCHHHHHHHHHHHSC--------CTTCCEEEEESSHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHhC-CCCCCEEEEECCCHHHHHHHHHHHhh--------hhccccceeeehhhhhhHHHHhhhhhcccc
Confidence 445677777887763 33343 7788899999999987653 223455555555544432221 11111110
Q ss_pred cCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHH
Q 013204 154 HQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAV 233 (447)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l 233 (447)
. ...+... ... .+.+....... .++..+.+..+.+..|.+.| +++|.++
T Consensus 104 ~----------~~~~~~~-------~~~---------~~~~~~~~~~~-~~~~~v~~~~~~~~tG~~~~----i~~i~~~ 152 (361)
T d1m32a_ 104 A----------YDCGEVA-------RPD---------VQAIDAILNAD-PTISHIAMVHSETTTGMLNP----IDEVGAL 152 (361)
T ss_dssp E----------EECCTTS-------CCC---------HHHHHHHHHHC-TTCCEEEEESEETTTTEECC----HHHHHHH
T ss_pred c----------ccccccC-------Ccc---------chhhHHHHHhc-cCccceEEEeeecccccchh----hhhhhhh
Confidence 0 0000000 000 12222222222 45778888888888888888 9999999
Q ss_pred HHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec--ccCCCcccceeEEEeChhHHHHhhhccCCCC--------
Q 013204 234 VKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMPIGAILVSPEVSEVIHSQSNTLG-------- 303 (447)
Q Consensus 234 ~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~-------- 303 (447)
|++||+++++|.+|+ +|.. + ++......|++++| |.++|+ .++|+++.+++..+..........
T Consensus 153 ~~~~g~~~~vDa~qs-~G~~--~--~d~~~~~~D~~~~s~~K~l~gp-~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (361)
T d1m32a_ 153 AHRYGKTYIVDAMSS-FGGI--P--MDIAALHIDYLISSANKCIQGV-PGFAFVIAREQKLAACKGHSRSLSLDLYAQWR 226 (361)
T ss_dssp HHHHTCEEEEECTTT-TTTS--C--CCTTTTTCSEEEEESSSTTCCC-SSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHH
T ss_pred hcccceeeEeecccc-cCcc--c--ccccccccceEEeeecccccCC-CCceEEEechhhhhhhccccccccccchhhhc
Confidence 999999999999998 5433 2 23334557999887 888886 588999999887765543211000
Q ss_pred ---ccCcCCCCCCcHHHHHHHHHHHHHHhhhcH----HHHHHHHHHHHHHhHhhccCCCceeeEe-eeeeEEEEEeecCC
Q 013204 304 ---SFSHGFTYSGHPVSCAVAIEALKIYKERNI----VEQVNKIAPKFQDGVKAFSDSPIIGEIR-GTGLILGTEFADNK 375 (447)
Q Consensus 304 ---~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~----~~~~~~~~~~l~~~L~~l~~~~~~~~~~-~~g~~~~i~~~~~~ 375 (447)
.......++++...+.+...+++....+.. ..+.+...+.+++.++.+. ........ ....++.+.+++..
T Consensus 227 ~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~~rs~~v~~~~~p~~~ 305 (361)
T d1m32a_ 227 CMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALG-FNTLLDDELHSPIITAFYSPEDP 305 (361)
T ss_dssp HHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTT-CCBSSCGGGBCSSEEEEECCCCT
T ss_pred cccccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhcC-CcccCChhhcCCcEEEEECCCCC
Confidence 001112334455566666666665544432 2344445555666665542 11111111 11233455554332
Q ss_pred CCCCCCCCCcchHHHHHHHHHHcCceEEeeC----CEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 376 SPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG----DNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g----~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
.. ....+.+.|.++|+++..++ +.+|++....++++||++++++|+++|
T Consensus 306 ~~---------~~~~~~~~l~~~gi~i~~G~~~~~~~~Ris~~g~~~~~di~~lv~al~~~L 358 (361)
T d1m32a_ 306 QY---------RFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAM 358 (361)
T ss_dssp TC---------CHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred CC---------CHHHHHHHHHHCCcEEECCCcCCCCEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 21 14568899999999987653 569999644689999999999999875
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.77 E-value=1.9e-18 Score=166.64 Aligned_cols=346 Identities=12% Similarity=-0.011 Sum_probs=183.0
Q ss_pred EEecCCccccccCCC--CCHHHHHHHHHHHhcCCc-ccccCcCCChHHHHHHHHHHHhcCc-CCCCeEEEeCC--hhh--
Q 013204 35 YLDSLAGLWCTALGG--SEPRLVAAATAQLNTLPF-YHSFWNRTTKPSLDLAKELLEMFTA-SKMAKVFFTNS--GSE-- 106 (447)
Q Consensus 35 ~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~v~~~~s--Gse-- 106 (447)
.+|+..|.....-|. ..|.|.+|..+.+.+... .|....+..+....+++++.+.... ...+.++.+.+ |+.
T Consensus 30 ~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~ 109 (401)
T d7aata_ 30 KMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSL 109 (401)
T ss_dssp CEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHH
T ss_pred cEEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHH
Confidence 488876643333342 347888888877765332 2333334444455555555443321 13345554432 222
Q ss_pred -HHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHH
Q 013204 107 -ANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEY 185 (447)
Q Consensus 107 -A~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (447)
++..+++... ..++.|++.+|.|+++.......+..... +++.+. ...
T Consensus 110 ~~~~~~~~~l~--------~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~-------------~~~~~~------~~~---- 158 (401)
T d7aata_ 110 RVGANFLQRFF--------KFSRDVYLPKPSWGNHTPIFRDAGLQLQA-------------YRYYDP------KTC---- 158 (401)
T ss_dssp HHHHHHHHHHC--------TTCCEEEEEESCCTTHHHHHHHTTCEEEE-------------EECEET------TTT----
T ss_pred HHHHHhhHhhc--------CCCceEEEecCCCcchhhHHHHcCCeEEE-------------Eecccc------ccc----
Confidence 2333333221 34588999999999987666554433221 111000 000
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-c---ccc
Q 013204 186 STRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-G---CDK 261 (447)
Q Consensus 186 ~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~---~~~ 261 (447)
..+.+.+.+.+....+++...++..|.|++| ...+.+.+++|.++|++|++++|.||+|.++...+... . ...
T Consensus 159 -~~~~~~~~~~~~~~~~~~~~iii~~p~NPTG--~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~ 235 (401)
T d7aata_ 159 -SLDFTGAMEDISKIPEKSIILLHACAHNPTG--VDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHF 235 (401)
T ss_dssp -EECHHHHHHHHTTSCTTCEEEEESSSCTTTC--CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHH
T ss_pred -cccHHHHHHHHhcCCCceEEEEecCCCCCcc--ccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhh
Confidence 0002455555544444445455555555555 56789999999999999999999999999886554211 1 111
Q ss_pred CCCCCC---eeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHH--Hh------h
Q 013204 262 YSIKPD---LVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKI--YK------E 330 (447)
Q Consensus 262 ~~~~~d---~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~--~~------~ 330 (447)
....+. +..+||.++..++++|+++++.++.+....................+.+.+.++...++. +. .
T Consensus 236 ~~~~~~~~~~~s~sk~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 315 (401)
T d7aata_ 236 IEQGIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEV 315 (401)
T ss_dssp HHTTCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hhhhcccceeEeccccceeeccccceeecchHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHH
Confidence 112222 236789887655999999998776554421100000000011122334444443333321 00 1
Q ss_pred hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeee-EEEEEeecCCCCCCCCCCCcchHHHHHHHH-HHcCceEEeeCCE
Q 013204 331 RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGL-ILGTEFADNKSPNEPFPPEWGIGAYFGAQC-EKHGMLVRVSGDN 408 (447)
Q Consensus 331 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~g~~ 408 (447)
+...++++++++.+.+.|+++........+...|. |..+.+. ..++++| .++||++.++
T Consensus 316 ~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls----------------~e~~~~L~~e~gV~~~pg--- 376 (401)
T d7aata_ 316 KGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLK----------------PEQVERLTKEFSIYMTKD--- 376 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCC----------------HHHHHHHHHHHCEECCTT---
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCcceECCCCeEEEecCCC----------------HHHHHHHHHhCCEEECCC---
Confidence 22344555566666666666511111112233333 3332221 1245555 5679988765
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 409 IMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 409 iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
+||+.. ..++++|+.+.++|.++++
T Consensus 377 ~Ris~a-~~~~~~i~~la~ai~~v~k 401 (401)
T d7aata_ 377 GRISVA-GVASSNVGYLAHAIHQVTK 401 (401)
T ss_dssp CEEEGG-GCCTTTHHHHHHHHHHHHC
T ss_pred cEEEec-cCCHHHHHHHHHHHHHHhC
Confidence 499843 3688899999999988763
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.77 E-value=7.6e-17 Score=155.46 Aligned_cols=343 Identities=16% Similarity=0.129 Sum_probs=202.5
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcc--cccC--cCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhh
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY--HSFW--NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSE 106 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGse 106 (447)
++..|||..+ .|..+..+.+++.+.+.+.... ...+ ....+...+..+++++++ +.++++++|++++|+
T Consensus 26 ~~~iYLd~as------~g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~ll-ga~~~ei~~~~~~T~ 98 (404)
T d1qz9a_ 26 EGVIYLDGNS------LGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLI-GARDGEVVVTDTTSI 98 (404)
T ss_dssp TTCEECCTTT------SCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTT-TCCTTSEEECSCHHH
T ss_pred CCCEEcCCcc------cccCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHh-CCCCCcEEEecCchH
Confidence 5678999743 3567889999999987653211 1111 111244456677777776 567889999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHH
Q 013204 107 ANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYS 186 (447)
Q Consensus 107 A~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (447)
++..++.......... .....+++.+..++........... ....... ...... .
T Consensus 99 ~~~~~~~~~~~~~~~~--~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~--~--------------- 153 (404)
T d1qz9a_ 99 NLFKVLSAALRVQATR--SPERRVIVTETSNFPTDLYIAEGLA-DMLQQGY-----TLRLVD--S--------------- 153 (404)
T ss_dssp HHHHHHHHHHHHHHHH--STTCCEEEEETTSCHHHHHHHHHHH-HHHCSSC-----EEEEES--S---------------
T ss_pred HHHHHhhhhhhhhccc--CCCcEEEEeccccchHHHHHHhhhh-eeeeece-----eccccc--c---------------
Confidence 9988877543222111 2235566666666654322211110 0000000 000000 0
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCC
Q 013204 187 TRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKP 266 (447)
Q Consensus 187 ~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~ 266 (447)
.+++++.+. +++++|++..+++..|.+.| +++|+++|+++|+++++|-+|+ +|... +......+
T Consensus 154 ---~~~~~~~i~----~~T~lV~i~~v~~~tG~~~p----v~~i~~~~~~~~~~~~vD~~q~-~g~~~----~~~~~~~~ 217 (404)
T d1qz9a_ 154 ---PEELPQAID----QDTAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHS-AGAVP----VDLHQAGA 217 (404)
T ss_dssp ---GGGHHHHCS----TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSC----CCHHHHTC
T ss_pred ---chhHHHhcC----CCceEEEEecccccccceec----HHHHhccccccccceeEEeecc-ccccc----cccccccc
Confidence 144455443 57889999999999999998 9999999999999999999987 54321 22222356
Q ss_pred Ceeeec--ccCCCcccceeEEEeChhHHHHhhhccCCCCc----------------cCcCCCCCCcHHHHHHHHHHHHHH
Q 013204 267 DLVSFA--KALSSAYMPIGAILVSPEVSEVIHSQSNTLGS----------------FSHGFTYSGHPVSCAVAIEALKIY 328 (447)
Q Consensus 267 d~v~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~----------------~~~~~t~~~~~~~~~aa~a~l~~~ 328 (447)
|+++++ |.+.+|....|+++.++...+.+.......+. .........+..+.....++++.+
T Consensus 218 d~~~~s~~K~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (404)
T d1qz9a_ 218 DYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVF 297 (404)
T ss_dssp SEEEECSSSTTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHH
T ss_pred eEEEEechhhcccCCceEEEEEechhhhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHH
Confidence 777665 77655422457777887765544311100000 000112233455666666666655
Q ss_pred hh---hcHHHHHHHHHHHHHHhHhhccCCC---cee--eEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCc
Q 013204 329 KE---RNIVEQVNKIAPKFQDGVKAFSDSP---IIG--EIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGM 400 (447)
Q Consensus 329 ~~---~~~~~~~~~~~~~l~~~L~~l~~~~---~~~--~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 400 (447)
.. +...++...+...+...+..+...+ +++ .....+.++.+...+ ...+.+.|.++||
T Consensus 298 ~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~i~~p~~~~~r~~~vsf~~~~--------------~~~v~~~L~~~gi 363 (404)
T d1qz9a_ 298 AQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE--------------GYAVIQALIDRGV 363 (404)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT--------------HHHHHHHHHTTTE
T ss_pred HHhhHHHHHHHHHHhHHHHHHHHHhhccCCCEEEECCCCccceeeEEEEecCC--------------HHHHHHHHHHCCC
Confidence 43 3344455555555555544442222 211 112234454554332 4468888999999
Q ss_pred eEEee-CCEEEEec-CCCCCHHHHHHHHHHHHHHHHH
Q 013204 401 LVRVS-GDNIMMSP-PFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 401 ~~~~~-g~~iR~~~-~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
++..+ ++.|||+| ++++|++||++++++|++++++
T Consensus 364 ~~~~r~~~~lRiS~~h~ynt~~did~~~~~L~~vl~~ 400 (404)
T d1qz9a_ 364 IGDYREPRIMRFGFTPLYTTFTEVWDAVQILGEILDR 400 (404)
T ss_dssp ECEEETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEeecCCCeEEEECCCCCCCHHHHHHHHHHHHHHHHh
Confidence 87655 47899998 6789999999999999999875
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=5.9e-18 Score=162.94 Aligned_cols=346 Identities=12% Similarity=0.068 Sum_probs=185.9
Q ss_pred EEecCCccccccCCC--CCHHHHHHHHHHHhcCCc-ccccCcCCChHHHHHHHHHHHhcCc---CCCCeEEEeCChhhHH
Q 013204 35 YLDSLAGLWCTALGG--SEPRLVAAATAQLNTLPF-YHSFWNRTTKPSLDLAKELLEMFTA---SKMAKVFFTNSGSEAN 108 (447)
Q Consensus 35 ~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~v~~~~sGseA~ 108 (447)
.+|+..|.....-|. ..|.|++|+.+.+++... .|....+..+....+++.+.+.... .....+..+.+|+.+.
T Consensus 28 kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (396)
T d2q7wa1 28 KINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGAL 107 (396)
T ss_dssp CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHH
T ss_pred cEEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHH
Confidence 479877744344443 347899998887765322 2332233334444444444333211 1222344566666666
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHH
Q 013204 109 DTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188 (447)
Q Consensus 109 ~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (447)
..++...... ...+.|++.+|+|..+.......+......+.... + ....
T Consensus 108 ~l~~~~l~~~------~~gd~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~-----------~--------~~~~----- 157 (396)
T d2q7wa1 108 RVAADFLAKN------TSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDA-----------E--------NHTL----- 157 (396)
T ss_dssp HHHHHHHHHH------SCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEET-----------T--------TTEE-----
T ss_pred HHHHHHHhhc------ccceEEEEecCCCccchHHHHHcCCeeEecccccc-----------c--------cccc-----
Confidence 5555543222 34588999999999987666655543221110000 0 0000
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccc--cc-cCCCC
Q 013204 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFG--CD-KYSIK 265 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~--~~-~~~~~ 265 (447)
+..++++......+..+..++..|.|++| ..++.+.+++|.++|++|++++|.||+|.++...+.... .. ..+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~i~~~~P~NPTG--~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~ 235 (396)
T d2q7wa1 158 DFDALINSLNEAQAGDVVLFHGCCHNPTG--IDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMH 235 (396)
T ss_dssp CHHHHHHHHTTCCTTCEEEEECSSCTTTC--CCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHC
T ss_pred ccchHHHHHHHhccCcEEEEecCCcCCcC--eecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhc
Confidence 02444554444444455455555666665 567899999999999999999999999998865443211 11 11111
Q ss_pred CC---eeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCC-CCcHHHHHHHHHHHHH------Hh--hhcH
Q 013204 266 PD---LVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTY-SGHPVSCAVAIEALKI------YK--ERNI 333 (447)
Q Consensus 266 ~d---~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~-~~~~~~~~aa~a~l~~------~~--~~~~ 333 (447)
+. +..+||.++..++++|++++++..++......... .....+++ +.+..++.++.+.+.. .. -+..
T Consensus 236 ~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 314 (396)
T d2q7wa1 236 KELIVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQM-KAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDM 314 (396)
T ss_dssp SCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHH-HHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC
T ss_pred ccccccccccccccccCCCccccccchhHHHHHHHhhhhh-hhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 22 33578987765599999999876555443210000 00011222 2333444443333321 00 0223
Q ss_pred HHHHHHHHHHHHHhHhhccCCCceeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEeeCCEEEE
Q 013204 334 VEQVNKIAPKFQDGVKAFSDSPIIGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVSGDNIMM 411 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~g~~iR~ 411 (447)
.++++++++.+.+.|+++........+ ...|.|..+.+. ..+.++|+ +.||++.+++ ||
T Consensus 315 ~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l~----------------~e~~~~L~~e~gV~~~~g~---Ri 375 (396)
T d2q7wa1 315 RQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLT----------------KEQVLRLREEFGVYAVASG---RV 375 (396)
T ss_dssp -CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCC----------------HHHHHHHHHHHCEECCTTC---EE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcceecCCCeEEEeeCCC----------------HHHHHHHHHhCCEEECCCC---EE
Confidence 355666667777777765111111112 223444433221 12455554 6799887765 88
Q ss_pred ecCCCCCHHHHHHHHHHHHHHH
Q 013204 412 SPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 412 ~~~~~~t~e~i~~~~~~l~~~l 433 (447)
+.. ..++++|+.+.++|.+++
T Consensus 376 ~~a-~l~~~~i~~~~~ai~~v~ 396 (396)
T d2q7wa1 376 NVA-GMTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp EGG-GCCTTTHHHHHHHHHHHC
T ss_pred Eec-CCCHHHHHHHHHHHHHhC
Confidence 843 458889999999998764
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.75 E-value=1.1e-16 Score=155.76 Aligned_cols=349 Identities=13% Similarity=0.106 Sum_probs=195.1
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQ 111 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~A 111 (447)
...++|+.+..++. ...+++..++..+.-. .+-.+...+|++++++++ +.+.+++++||+.||..+
T Consensus 41 ~~v~iDl~sDs~t~-------am~~~~~aa~~~GDd~----Y~~dpt~~~lE~~~a~l~---G~e~al~~~SGt~An~~a 106 (456)
T d1c7ga_ 41 KDIYIDLLTDSGTN-------AMSDKQWAGMMIGDEA----YAGSENFYHLEKTVKELF---GFKHIVPTHQGRGAENLL 106 (456)
T ss_dssp GGCSEECSCSSSCC-------CEEHHHHHHTTSCCCC----SSSCHHHHHHHHHHHHHH---CCSEEEEESSHHHHHHHH
T ss_pred cceeeEcccCCCcc-------cchHHHHHHHhccchh----ccCCchHHHHHHHHHHHh---CCCeEEECCCHHHHHHHH
Confidence 34689998875542 1223333343333222 224677889999999998 778999999999999999
Q ss_pred HHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcc--ccC-CCCCCCCcceecCCCCcccCCCCCCChhHHHHH
Q 013204 112 VKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPA--LHQ-KFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188 (447)
Q Consensus 112 l~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (447)
++... .+++.|+. ...|+.+.......++.+. ... .... ...+.++ . ..
T Consensus 107 ~~~l~--------~~Gd~Vi~-~~~f~~~~~~i~~~g~~~~~~~~~~~~~~--------~~~~~~~-----~------~~ 158 (456)
T d1c7ga_ 107 SQLAI--------KPGQYVAG-NMYFTTTRFHQEKNGATFVDIVRDEAHDA--------SLNLPFK-----G------DI 158 (456)
T ss_dssp HHHHC--------CTTEEEEE-SSCCHHHHHHHHHTTEEEEECBCGGGGCT--------TCCCSCT-----T------CB
T ss_pred HHHhc--------CCCCeEec-CcchHHHHHHHHHcCceeeeccccccccc--------cccCCcc-----c------cC
Confidence 99763 22345553 3334443222211111111 000 0000 0000000 0 01
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc---cccccccccCC--
Q 013204 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR---LGTMFGCDKYS-- 263 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~---~g~~~~~~~~~-- 263 (447)
+++.|++.+....++.++++++|..++.+|..+++.+.+++|.++|++||+.++.|+++. ++. .+.. ...+.+
T Consensus 159 d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~-~~~a~~~~~~-~~~~~~~~ 236 (456)
T d1c7ga_ 159 DLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRC-VENAYFIKEQ-EAGYENVS 236 (456)
T ss_dssp CHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTH-HHHHHHHHHH-STTCTTSC
T ss_pred CHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchh-hcchhhhccc-ccccCCCC
Confidence 148899999877777889999999988888889999999999999999999999999875 211 0000 000111
Q ss_pred ---------CCCCeeeec--ccCCCcccceeEEEeC-hhHHHHhhhccCCCCccCcCCCCCC-cHHHHHHHHHHHHHHhh
Q 013204 264 ---------IKPDLVSFA--KALSSAYMPIGAILVS-PEVSEVIHSQSNTLGSFSHGFTYSG-HPVSCAVAIEALKIYKE 330 (447)
Q Consensus 264 ---------~~~d~v~~s--K~l~gg~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~-~~~~~~aa~a~l~~~~~ 330 (447)
-..|++++| |.++++ ..|+++.+ +++.+.++.... ......++.+ +...+.+....+.....
T Consensus 237 i~~i~~~~~~~ad~~s~s~~K~~~~~--~GG~i~~~~~~l~~~~r~~~~---~~~g~~~~g~~~~~~~~a~a~~l~e~~~ 311 (456)
T d1c7ga_ 237 IKDIVHEMFSYADGCTMSGKKDCLVN--IGGFLCMNDEEMFSAAKELVV---VYEGMPSYGGLAGRDMEAMAIGLREAMQ 311 (456)
T ss_dssp HHHHHHHHHTTCSEEEEETTTTTCCS--SCEEEEESCHHHHHHHHHHHH---HHTCCTTTTTCCHHHHHHHHHHHHHHTC
T ss_pred hhhhccccccccccEEEecccccccc--ceeEEEcCCHHHHHHHHHhcc---ccCCCcccchhhHHHHHHHHHHHHHhcC
Confidence 125777665 655542 22556555 456655542100 0011122222 23333333333444444
Q ss_pred hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchH-HHHHHHHHHcCceEEeeC---
Q 013204 331 RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIG-AYFGAQCEKHGMLVRVSG--- 406 (447)
Q Consensus 331 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~Gi~~~~~g--- 406 (447)
.+..++..++.++|.+.|+++ ..+++.. ..+....++....... .+.....+ ..+...+.+.||...+.+
T Consensus 312 ~~~l~~r~~~~~~L~e~L~~~-g~~vv~p--~g~~~v~vda~~~~~~---i~~~~~~~~~~~~~l~~~~GIr~~~~g~~~ 385 (456)
T d1c7ga_ 312 YEYIEHRVKQVRYLGDKLREA-GVPIVEP--TGGHAVFLDARRFCPH---LTQDQFPAQSLAASIYMETGVRSMERGIVS 385 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCBCSS--CCSSEEEEEHHHHCTT---SCGGGCHHHHHHHHHHHHHSEECEEESHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc-cCCcccC--CCCcceeEechhhccC---CCcccccHHHHHHHHHHHhCeeecccCccc
Confidence 555666677778898988876 3333321 1222333332221100 01111112 233444567788655331
Q ss_pred ---------------CEEEEecC-CCCCHHHHHHHHHHHHHHHHH
Q 013204 407 ---------------DNIMMSPP-FIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 407 ---------------~~iR~~~~-~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+.+|++.| ...|+++||.++++|+++.+.
T Consensus 386 ~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~~ 430 (456)
T d1c7ga_ 386 AGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQH 430 (456)
T ss_dssp HCBCSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHTT
T ss_pred cccCCcccCccCCccceEEEecCcccCCHHHHHHHHHHHHHHHhh
Confidence 35999977 456999999999999987753
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.74 E-value=5.8e-16 Score=147.74 Aligned_cols=336 Identities=19% Similarity=0.158 Sum_probs=188.2
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcc-cccCc---CCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHH
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY-HSFWN---RTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEAN 108 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~~~~---~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~ 108 (447)
|.|||..++ +.-++.+++++.+.+++.... ++... ...+...+..+++++++ +.++++++|++|+|+++
T Consensus 2 ~iyld~a~~------~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~-~~~~~~i~~~~~~T~~l 74 (376)
T d1eg5a_ 2 RVYFDNNAT------TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVL-GVSPSEIFFTSCATESI 74 (376)
T ss_dssp CEECBTTTC------CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHH-TSCGGGEEEESCHHHHH
T ss_pred EEEEECccc------ccCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHc-CCCCCcEEEECCHHHHH
Confidence 568887544 457899999999988764221 11000 01122233455677776 45778999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhh---cccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHH
Q 013204 109 DTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAA---SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEY 185 (447)
Q Consensus 109 ~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (447)
..++...... . ..+..+++....+|....... ...|.. +..+|+....+
T Consensus 75 ~~~~~~~~~~----~-~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~------------v~~vp~~~~~~----------- 126 (376)
T d1eg5a_ 75 NWILKTVAET----F-EKRKRTIITTPIEHKAVLETMKYLSMKGFK------------VKYVPVDSRGV----------- 126 (376)
T ss_dssp HHHHHHHHHH----T-TTTCCEEEECTTSCHHHHHHHHHHHHTTCE------------EEECCBCTTSC-----------
T ss_pred Hhhhhccccc----c-cccCcccccccccchhhHHHHHHHHhcCCE------------EEEEcCCCCCe-----------
Confidence 9988754322 1 223444555555555533222 111211 11222211111
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhc--CCEEEEehhhcCCCccccccccccCC
Q 013204 186 STRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKY--DILFIADEVICAFGRLGTMFGCDKYS 263 (447)
Q Consensus 186 ~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~--g~~li~DEv~~g~g~~g~~~~~~~~~ 263 (447)
.+++++++.+. +++++|++..+++.+|.+.+ ++++.++|+.+ ++++++|.+|. +|.. + .+...
T Consensus 127 --id~~~l~~~i~----~~t~lv~is~v~~~tG~~~~----~~~i~~~~~~~~~~~~~~vD~~q~-~g~~--~--~d~~~ 191 (376)
T d1eg5a_ 127 --VKLEELEKLVD----EDTFLVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKI--P--FSLEK 191 (376)
T ss_dssp --BCHHHHHHHCC----TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTS--C--CCCTT
T ss_pred --ECHHHHHHhcC----CCceEEEEECCccccceeee----ehhhhhhhhhcccCceeEEEeeec-cccc--c--ccccc
Confidence 01366666653 47889999999999998888 89999988665 89999999986 5433 1 23334
Q ss_pred CCCCeeeec--ccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh--hcHHHHHHH
Q 013204 264 IKPDLVSFA--KALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE--RNIVEQVNK 339 (447)
Q Consensus 264 ~~~d~v~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~--~~~~~~~~~ 339 (447)
..+|++++| |.++ + .+.|+++.+++. .+.......+..........+......+.+....... .........
T Consensus 192 ~~~D~~~~s~~K~~g-p-~G~~~l~~~~~~--~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (376)
T d1eg5a_ 192 LEVDYASFSAHKFHG-P-KGVGITYIRKGV--PIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEK 267 (376)
T ss_dssp TCCSEEEEEGGGGTS-C-TTCEEEEECTTS--CCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred cCccceecccceeec-C-CCceeEEeccCc--ccCCcccCCCCcccccCCcccchhhhhHHHHhhccccchhhhhhhhhh
Confidence 457888654 8754 3 567888877653 1111000000011111222344444444444433221 223344444
Q ss_pred HHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee--------------
Q 013204 340 IAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-------------- 405 (447)
Q Consensus 340 ~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------------- 405 (447)
...++.+.|+.....-.............+.+... .+..+...|.++||.++.+
T Consensus 268 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~L~~~gI~vr~G~~c~~~~~~~~~~l 335 (376)
T d1eg5a_ 268 LRSKLVSGLMNLGAHIITPLEISLPNTLSVSFPNI------------RGSTLQNLLSGYGIYVSTSSACTSKDERLRHVL 335 (376)
T ss_dssp HHHHHHHHHHTTTCEECSCTTSBCTTEEEEECTTC------------CHHHHHHHHHHTTEECBC------------CHH
T ss_pred hhhhhccccccccccccccccccccceeeeccCCC------------CHHHHHHHHhhCCeEEeCcchhcCCccchhHHH
Confidence 55566666654311000000001111122223221 1455777788889877532
Q ss_pred ----------CCEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 406 ----------GDNIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 406 ----------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
++.||+++++.+|++|||+++++|+++++
T Consensus 336 ~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~iv~ 374 (376)
T d1eg5a_ 336 DAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILS 374 (376)
T ss_dssp HHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Confidence 13599999999999999999999999876
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.73 E-value=1.4e-16 Score=152.04 Aligned_cols=323 Identities=14% Similarity=0.118 Sum_probs=183.4
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcce
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 129 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~ 129 (447)
-+|+|++||.. ....|+. ....+...+..+.+++++...+...++|+.|||++++.++..+. ..+++
T Consensus 29 v~~~Vl~am~~----~~~~hr~-~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~~--------~~~~~ 95 (377)
T d1vjoa_ 29 AHPSVLQAMNV----SPVGHLD-PAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAV--------EPGDV 95 (377)
T ss_dssp CCHHHHHHHSS----CCCCTTS-HHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC--------CTTCE
T ss_pred CCHHHHHHhCc----CCCCCCC-HHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhcc--------ccccc
Confidence 46777766532 2222221 11234566777777777743344578888899999999998763 34566
Q ss_pred EEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 013204 130 FIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFI 209 (447)
Q Consensus 130 vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi 209 (447)
+++....+++................ ...+.. .... .+..+..... ..+..+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-------~~~~--------~~~~~~~~~~---~~~~~v~ 148 (377)
T d1vjoa_ 96 VLIGVAGYFGNRLVDMAGRYGADVRT---------ISKPWG-------EVFS--------LEELRTALET---HRPAILA 148 (377)
T ss_dssp EEEEESSHHHHHHHHHHHHTTCEEEE---------EECCTT-------CCCC--------HHHHHHHHHH---HCCSEEE
T ss_pred cceeeechhhhhhhhhhhhhcccccc---------cccCCC-------Cccc--------chhhhhhhhc---Ccceeee
Confidence 77766655554332222111110000 000000 0000 1222322222 2345666
Q ss_pred EccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec--ccCCCcccceeEEEe
Q 013204 210 AEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMPIGAILV 287 (447)
Q Consensus 210 ~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l~gg~~~~g~~~~ 287 (447)
+..+++++|.+.+ ++++.++|+++|+++++|.+++ +|.. . ++......|++++| |.++|+ ..+|+++.
T Consensus 149 ~~~~~~~tg~~~~----i~~i~~~~~~~g~~~~vDa~~~-~g~~--~--~~~~~~~~d~~~~s~~K~~~gp-~g~~~~~~ 218 (377)
T d1vjoa_ 149 LVHAETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LGGV--P--IFLDAWGVDLAYSCSQKGLGCS-PGASPFTM 218 (377)
T ss_dssp EESEETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TTTS--C--CCTTTTTCSEEECCSSSTTCSC-SSCEEEEE
T ss_pred eeeeeccceeeec----hhhhhhhhhhccceEEEecchh-hhhh--h--hcccccccceeeecccccccCC-CEEEEecc
Confidence 6777788888888 8999999999999999999997 5433 1 23334557888776 677776 57788888
Q ss_pred ChhHHHHhhhccCCCCcc------------CcCCCC-CCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHhHhhc
Q 013204 288 SPEVSEVIHSQSNTLGSF------------SHGFTY-SGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQDGVKAF 351 (447)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~------------~~~~t~-~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l 351 (447)
++..++...........+ ....+. .++...+....++.+.+.. +...++.+++..++++.+.+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~ 298 (377)
T d1vjoa_ 219 SSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI 298 (377)
T ss_dssp CHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHhhhhccCCCCcceeeccchhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhcc
Confidence 998877665432111100 011122 2233333434444444433 334556666667777777665
Q ss_pred cCCCcee-eEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEee-----CCEEEEec-CCCCCHHHHH
Q 013204 352 SDSPIIG-EIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVS-----GDNIMMSP-PFIMSPEEVD 423 (447)
Q Consensus 352 ~~~~~~~-~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-----g~~iR~~~-~~~~t~e~i~ 423 (447)
....+. .-.....++.+.+++.. ....+...|+ +.||.+..+ ++.+|+++ .+..|+|||+
T Consensus 299 -~~~~~~~~~~rs~~v~~~~~p~~~-----------~~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~ 366 (377)
T d1vjoa_ 299 -GLSLHVEKEYRLPTLTTVCIPDGV-----------DGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVD 366 (377)
T ss_dssp -TCCBSSCGGGBCSSEEEEECCTTC-----------CHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHH
T ss_pred -CceeecChHhcCCeEEEEECCCCC-----------CHHHHHHHHHhcCCEEEecCcccccCCEEEEecCcCCCCHHHHH
Confidence 222211 11112234455554321 1456777775 459988753 46799995 4677899999
Q ss_pred HHHHHHHHHHH
Q 013204 424 ELISKYGKALK 434 (447)
Q Consensus 424 ~~~~~l~~~l~ 434 (447)
+++++|+++|+
T Consensus 367 ~lv~al~~~l~ 377 (377)
T d1vjoa_ 367 QLIPALEQVLR 377 (377)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999999874
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=99.72 E-value=7.5e-16 Score=148.63 Aligned_cols=350 Identities=12% Similarity=0.054 Sum_probs=182.5
Q ss_pred EEecCCccccccCCCC--CHHHHHHHHHHHhcCC--cccccCcCCChHHHHHHHHHHHhcCc-CCCCeEE--EeCChhhH
Q 013204 35 YLDSLAGLWCTALGGS--EPRLVAAATAQLNTLP--FYHSFWNRTTKPSLDLAKELLEMFTA-SKMAKVF--FTNSGSEA 107 (447)
Q Consensus 35 ~lD~~~~~~~~~lG~~--~p~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~v~--~~~sGseA 107 (447)
.||++-|...+.-|.. .|.|.+|......+.. +.|....+..+....+++.+.+.... ...+.+. -+.+|..+
T Consensus 31 kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (412)
T d1yaaa_ 31 KVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGA 110 (412)
T ss_dssp CEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHH
T ss_pred cEEeecCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCCCCCHHHHHHHHHHHhcccCccccccceeEEecccchhH
Confidence 4888766434455532 3677776544433222 22222233344444444444333211 1122222 22344444
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 108 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 108 ~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
...++...... .+++.|++.+|+|..+.......+......+.... +.+. .
T Consensus 111 ~~~~~~~~~~~------~~gd~Vlip~P~~~~y~~~~~~~g~~~~~~~~~~~-----------~~~~-----~------- 161 (412)
T d1yaaa_ 111 LHISAKFFSKF------FPDKLVYLSKPTWANHMAIFENQGLKTATYPYWAN-----------ETKS-----L------- 161 (412)
T ss_dssp HHHHHHHHHHH------CTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEET-----------TTTE-----E-------
T ss_pred HHHHHHHHhcc------CCCCEEecccccCchhHHHHHHcCCceeccccccc-----------cccc-----c-------
Confidence 44444332222 34588999999998887666554443321110000 0000 0
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-c------cc
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-G------CD 260 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~------~~ 260 (447)
+.+.+++.+....+.....++..|.|++| ..++.+.+++|.++|++|++++|.||+|.++...+... . ..
T Consensus 162 -~~~~~~~~~~~~~~~~~~i~i~~P~NPTG--~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~ 238 (412)
T d1yaaa_ 162 -DLNGFLNAIQKAPEGSIFVLHSCAHNPTG--LDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVE 238 (412)
T ss_dssp -CHHHHHHHHHHSCTTCEEEEECSSCTTTC--CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHH
T ss_pred -cchhhhcccccCCCceEEEEecCCCCCcc--ccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhh
Confidence 02455555554443334444444555554 56789999999999999999999999999886655311 1 11
Q ss_pred cCCCCCCee---eecccCCCcccceeEEEeChhHHHHhhhccC----CCCccCcCCCCCCcHHHHHHHHHHHHHHh----
Q 013204 261 KYSIKPDLV---SFAKALSSAYMPIGAILVSPEVSEVIHSQSN----TLGSFSHGFTYSGHPVSCAVAIEALKIYK---- 329 (447)
Q Consensus 261 ~~~~~~d~v---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~t~~~~~~~~~aa~a~l~~~~---- 329 (447)
.....+..+ ++||.++..++|+|++++++++.+.+..... ...........+.+.+++.++...++.-.
T Consensus 239 ~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~ 318 (412)
T d1yaaa_ 239 KLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQ 318 (412)
T ss_dssp HTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHH
T ss_pred ccccCCCeEEEEecCCccccCcCceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHH
Confidence 222333333 5799888655999999987654321110000 00011122234455666666555544210
Q ss_pred ----hhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHH-HHcCceEEe
Q 013204 330 ----ERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQC-EKHGMLVRV 404 (447)
Q Consensus 330 ----~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~ 404 (447)
-+...+.++++++.+.+.|+++.....+..+...|.|+.. +.- ...++++| .+.||++.+
T Consensus 319 ~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~~~~gG~F~~-~~l--------------s~e~~~~L~~e~~V~~~~ 383 (412)
T d1yaaa_ 319 WHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSF-TGL--------------TPQMVKRLEETHAVYLVA 383 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEE-CCC--------------CHHHHHHHHHHHCEECCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeCCCceEEEe-cCc--------------CHHHHHHHHHhCCEEECC
Confidence 1234456666667777777665211112223344444321 111 11244554 577887766
Q ss_pred eCCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 405 SGDNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 405 ~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
++ ||+.. ..+++.|+.+.++|.++++.
T Consensus 384 g~---Ris~~-g~~~~~i~~l~~ai~~v~k~ 410 (412)
T d1yaaa_ 384 SG---RASIA-GLNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp TS---EEEGG-GCCTTTHHHHHHHHHHHHHH
T ss_pred CC---EEEec-cCCHHHHHHHHHHHHHHHHh
Confidence 43 88843 36888999999999988764
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.72 E-value=6.9e-17 Score=153.42 Aligned_cols=211 Identities=16% Similarity=0.019 Sum_probs=126.2
Q ss_pred CHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceE
Q 013204 51 EPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKF 130 (447)
Q Consensus 51 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~v 130 (447)
++.+.++..+.++.... +.-...++.+...+.+...+.+.+++++||++|+..++..+ .+++.|
T Consensus 31 ~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al---------~~~~~v 94 (366)
T d2aeua1 31 GFLIDEKDKALLNTYIG-------SSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL---------KPKKVI 94 (366)
T ss_dssp CCCCCHHHHHHHTSTTH-------HHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH---------CCSEEE
T ss_pred CCCccHHHHHHHHHhcC-------chhhHHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHh---------CCCCEE
Confidence 44555555555554311 11234456666666665456678999999999999999765 344666
Q ss_pred EEEcC-CCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 013204 131 IARQK-SYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFI 209 (447)
Q Consensus 131 i~~~~-~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi 209 (447)
+++.+ ..|.+....+...+... ++.. +++++++.+. + ++++|+
T Consensus 95 i~~~~~~~~~~~~~~~~l~g~~~--------------v~~~------------------d~e~l~~~i~---~-~tk~i~ 138 (366)
T d2aeua1 95 HYLPELPGHPSIERSCKIVNAKY--------------FESD------------------KVGEILNKID---K-DTLVII 138 (366)
T ss_dssp EECSSSSCCTHHHHHHHHTTCEE--------------EEES------------------CHHHHHTTCC---T-TEEEEE
T ss_pred EEecCCCcchhHHHHHHhcCCeE--------------ECCC------------------CHHHHHHhcC---C-CceEEE
Confidence 66533 45665444444333211 1110 1355555443 3 556666
Q ss_pred Ec-cccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec--ccCCCcccceeEEE
Q 013204 210 AE-PVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMPIGAIL 286 (447)
Q Consensus 210 ~e-pv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l~gg~~~~g~~~ 286 (447)
++ |.+++++ +.+.|++|+++|++||+++|+||+|... ..+............|++++| |.++| +++|+++
T Consensus 139 ~~~p~n~~~~----~~~~l~~i~~ia~~~~~~~i~De~y~~~-~~~~~~~~~~~~~~~di~~~S~sK~~~g--~~~G~i~ 211 (366)
T d2aeua1 139 TGSTMDLKVI----ELENFKKVINTAKNKEAIVFVDDASGAR-VRLLFNQPPALKLGADLVVTSTDKLMEG--PRGGLLA 211 (366)
T ss_dssp ECBCTTSCBC----CHHHHHHHHHHHHHHTCCEEEECTTHHH-HHHHTTCCCHHHHTCSEEEEETTSSSSS--CSCEEEE
T ss_pred EEecCCCCcC----CHHHHHHHHHHhccCcEEEEEecCcccc-ccccccCCCHhhcCceEEEecccccccc--cceeEEE
Confidence 65 4555443 3355999999999999999999998622 111110000001135777654 66665 7999999
Q ss_pred eChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHH
Q 013204 287 VSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKI 327 (447)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~ 327 (447)
+++++++.+... ....+++.+|..+.++.++|+.
T Consensus 212 ~~~~~i~~~~~~-------~~~~g~~~~~~~~~a~~~aL~t 245 (366)
T d2aeua1 212 GKKELVDKIYIE-------GTKFGLEAQPPLLAGIYRALKN 245 (366)
T ss_dssp EEHHHHHHHHHH-------HHTTTCBCCHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHH-------HhcccccCCHHHHHHHHHHHHh
Confidence 999999988642 2223455667777777777763
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.71 E-value=8.1e-17 Score=154.77 Aligned_cols=345 Identities=10% Similarity=0.010 Sum_probs=184.0
Q ss_pred EEecCCccccccCCC--CCHHHHHHHHHHHhcCC-cccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHH
Q 013204 35 YLDSLAGLWCTALGG--SEPRLVAAATAQLNTLP-FYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQ 111 (447)
Q Consensus 35 ~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~A 111 (447)
.+|+.-|.....-|. ..|.|.+|+++.+++.. ..|....+..+....+++.+.+..........+.+.+|+.+...+
T Consensus 28 ~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 107 (394)
T d2ay1a_ 28 KIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQA 107 (394)
T ss_dssp CEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHH
T ss_pred CEEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccccccccccceeccCchHHHHHH
Confidence 368766643334453 35799999888876532 223333344445555555554443222334566677777676666
Q ss_pred HHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHH
Q 013204 112 VKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191 (447)
Q Consensus 112 l~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (447)
+.+.... ...+.|++.++.|-.+.......+...... ++.... .... ..+
T Consensus 108 ~~~~~~~------~~gd~V~~p~p~~~~y~~~~~~~g~~~v~~-------------~~~~~~------~~~~-----~~~ 157 (394)
T d2ay1a_ 108 LELARMA------NPDLRVFVSDPTWPNHVSIMNFMGLPVQTY-------------RYFDAE------TRGV-----DFE 157 (394)
T ss_dssp HHHHHHH------CTTCCEEEEESCCHHHHHHHHHHTCCEEEE-------------ECEETT------TTEE-----CHH
T ss_pred HHHhhhc------CCceEEEEecccccchHHHHHHcCCEEEEe-------------cccchh------cccc-----cch
Confidence 5543322 345789999999977755554444332211 110000 0000 024
Q ss_pred HHHHHHHhhCCCcEEEEEE-ccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccc--ccc-CCCCCC
Q 013204 192 NLEDLILKEGPETIAAFIA-EPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFG--CDK-YSIKPD 267 (447)
Q Consensus 192 ~le~~l~~~~~~~~a~vi~-epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~--~~~-~~~~~d 267 (447)
++++......+.+. ++++ .|.|++| ..++.+.+++|.++|++|++++|.||+|.++...+.... ... ......
T Consensus 158 ~~~~~~~~~~~~~~-i~~~~~p~NPTG--~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~ 234 (394)
T d2ay1a_ 158 GMKADLAAAKKGDM-VLLHGCCHNPTG--ANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPE 234 (394)
T ss_dssp HHHHHHHTCCTTCE-EEEESSSCTTTC--CCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSS
T ss_pred hHHHHHhhcccCcE-EEEeCCCCCCCC--CCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhccc
Confidence 45555554444344 4555 4555555 667899999999999999999999999998866543211 100 001122
Q ss_pred ---eeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHH--HHh------hhcHHHH
Q 013204 268 ---LVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALK--IYK------ERNIVEQ 336 (447)
Q Consensus 268 ---~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~--~~~------~~~~~~~ 336 (447)
+.++||.++..++++|++++.....+........................++.+...+. .+. .+...++
T Consensus 235 ~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 314 (394)
T d2ay1a_ 235 VLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSG 314 (394)
T ss_dssp EEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCcccccchhhchhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 23578987765599999998776554332110000000011111222223322222221 010 1224456
Q ss_pred HHHHHHHHHHhHhhccCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEeeCCEEEEecC
Q 013204 337 VNKIAPKFQDGVKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVSGDNIMMSPP 414 (447)
Q Consensus 337 ~~~~~~~l~~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~g~~iR~~~~ 414 (447)
++++++.+.+.|+++........+... |.|..+.+. ..++++|+ ++||++.+++ ||+.+
T Consensus 315 ~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls----------------~~~~~~L~~~~~V~~~~g~---Ri~~a 375 (394)
T d2ay1a_ 315 MLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGAT----------------PEQVKRIKEEFGIYMVGDS---RINIA 375 (394)
T ss_dssp HHHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCC----------------HHHHHHHHHHHCEECCTTC---EEEGG
T ss_pred HHHHHHHHHHHHHHhCCCCceeeECCCceeEEecCcC----------------HHHHHHHHHhCCEEecCCC---EEEec
Confidence 666667777777665211111112223 334333221 12455664 6799888754 88853
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 013204 415 FIMSPEEVDELISKYGKA 432 (447)
Q Consensus 415 ~~~t~e~i~~~~~~l~~~ 432 (447)
..++++|+++.++|.++
T Consensus 376 -~l~~~~i~~l~~ai~~v 392 (394)
T d2ay1a_ 376 -GLNDNTIPILARAIIEV 392 (394)
T ss_dssp -GCCTTTHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHh
Confidence 47889999988888764
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=9.9e-18 Score=161.36 Aligned_cols=346 Identities=12% Similarity=0.008 Sum_probs=178.7
Q ss_pred EecCCccccccCCCC--CHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc-----CCCCeEEEeCChhhHH
Q 013204 36 LDSLAGLWCTALGGS--EPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA-----SKMAKVFFTNSGSEAN 108 (447)
Q Consensus 36 lD~~~~~~~~~lG~~--~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~~v~~~~sGseA~ 108 (447)
+|++-|.+...-|.. .|.|.+|...........+. ..+.....+|.+.+++++.. ...++++.+.+++.+.
T Consensus 29 InL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~--Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~ 106 (397)
T d3tata_ 29 VNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASL--YLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSG 106 (397)
T ss_dssp EECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBC--CCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHH
T ss_pred EEccCCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCC--CCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHH
Confidence 888777544555542 35677765543322111111 12344455666666665421 2456777777777666
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHH
Q 013204 109 DTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188 (447)
Q Consensus 109 ~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (447)
..++.++..... .+.+.|++.+|+|..+.......+..... +++.....+ ..+
T Consensus 107 ~~~l~~~~~~~~----~pgd~Vlv~~P~y~~y~~~~~~~G~~~~~-------------v~~~~~~~~---~~~------- 159 (397)
T d3tata_ 107 ALKVGADFLKRY----FPESGVWVSDPTWENHVAIFAGAGFEVST-------------YPWYDEATN---GVR------- 159 (397)
T ss_dssp HHHHHHHHHHHH----CSSCCCEECSSCCTTHHHHHHTTTCCCEE-------------CCCCCTTTS---SCC-------
T ss_pred HHHHHHHHhhhc----CCCCcceecccCccccHHHHHHcCCEEEE-------------Eecchhhcc---ccc-------
Confidence 555554332211 33578999999999987666655443221 111100000 000
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc--cc-ccCCCC
Q 013204 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF--GC-DKYSIK 265 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~--~~-~~~~~~ 265 (447)
.+++.+.+....+..+..++..|.|++| .+++.+.+++|.++|++|++++|.||+|.++...+... .. ...+..
T Consensus 160 -~~~~~~~~~~~~~~~~~~~~~~p~NPTG--~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~ 236 (397)
T d3tata_ 160 -FNDLLATLKTLPARSIVLLHPCCHNPTG--ADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAG 236 (397)
T ss_dssp -HHHHHHHHTTCCSSCCCEECSSSCSSSC--CCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTT
T ss_pred -hHHHHHHhhhcccccEEEEecCCCCCCC--eeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcC
Confidence 2444444444333344444555556655 66799999999999999999999999999885544221 11 111222
Q ss_pred CCe---eeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hh-------cHH
Q 013204 266 PDL---VSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ER-------NIV 334 (447)
Q Consensus 266 ~d~---v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~-------~~~ 334 (447)
... .++||.++..++|+|+++++...++..................+.+...+.++...+..-. .. ...
T Consensus 237 ~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 316 (397)
T d3tata_ 237 LPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMR 316 (397)
T ss_dssp CCCEECBCCHHHHTBTTTCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred CceEEEecCcccccccCccccccccchhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 233 3578977764499999998765443322100000001111222333344444433332110 11 122
Q ss_pred HHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEeeCCEEEEe
Q 013204 335 EQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVSGDNIMMS 412 (447)
Q Consensus 335 ~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~g~~iR~~ 412 (447)
++++++.+.+.+.|+.+ ............|.|..+.+. ..+.++|+ +.||++.+++ ||+
T Consensus 317 ~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls----------------~e~~~~L~~e~~V~l~~g~---Ri~ 377 (397)
T d3tata_ 317 TRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLS----------------AAQVDRLREEFGVYLIASG---RMC 377 (397)
T ss_dssp HHHHHHHHHHHHTTTTTCTTSCTTHHHHCCSSBCCCCCC----------------HHHHHHHTTTTCEECCSSS---CCB
T ss_pred HHHHHHHHHHHHHHHHhCCCCceEEEcCCCceEEecCcC----------------HHHHHHHHHhCCEEeCCCC---EEE
Confidence 33333334444444333 111110011223333332221 13455665 4688887654 888
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q 013204 413 PPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 413 ~~~~~t~e~i~~~~~~l~~~l 433 (447)
.+ ..++++|+++.++|.+++
T Consensus 378 ~a-~~~~~~i~~~~~ai~~v~ 397 (397)
T d3tata_ 378 VA-GLNTANVQRVAKAFAAVM 397 (397)
T ss_dssp TT-SCCTTTHHHHHHHHHHHC
T ss_pred ec-cCCHHHHHHHHHHHHHhC
Confidence 54 578999999999988763
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.70 E-value=1.5e-15 Score=145.44 Aligned_cols=325 Identities=14% Similarity=0.108 Sum_probs=185.6
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcce
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 129 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~ 129 (447)
-+|+|++||.+.. ..|+. .-..+...+..+.+++++.-.+.+.++|+.|||++++.++..+. ..+++
T Consensus 28 ~~~~V~~Am~~~~----~~hr~-~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l~--------~~~~~ 94 (388)
T d2ch1a1 28 CSKRVLTAMTNTV----LSNFH-AELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLL--------EEGDR 94 (388)
T ss_dssp CCHHHHHHTTSCC----CCTTC-HHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC--------CTTCE
T ss_pred CCHHHHHHhCcCC----CCCCC-HHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHhc--------ccccc
Confidence 4788887763321 12211 11234556677778877753344566677899999999998764 33466
Q ss_pred EEEEcCCCccchhhhhcc-cCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEE
Q 013204 130 FIARQKSYHGSTLIAASL-SGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAF 208 (447)
Q Consensus 130 vi~~~~~yhg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~v 208 (447)
++++..+..+........ -+... ..+..++. ...+ .++.++.... ..+..+
T Consensus 95 vl~~~~g~~~~~~~~~~~~~~~~~------------~~~~~~~~-----~~~~--------~~~~~~~~~~---~~~~~v 146 (388)
T d2ch1a1 95 VLIAVNGIWAERAVEMSERYGADV------------RTIEGPPD-----RPFS--------LETLARAIEL---HQPKCL 146 (388)
T ss_dssp EEEEESSHHHHHHHHHHHHTTCEE------------EEEECCTT-----SCCC--------HHHHHHHHHH---HCCSEE
T ss_pred ccccccccccccchhhhhhhcccc------------cccccccc-----cccc--------hhhhhhhhcc---CCccee
Confidence 766655554543222111 11110 01111100 0000 1333333332 234567
Q ss_pred EEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec--ccCCCcccceeEEE
Q 013204 209 IAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMPIGAIL 286 (447)
Q Consensus 209 i~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l~gg~~~~g~~~ 286 (447)
.+..+.+++|.+.+ ++++.++|+++|+++++|.+++ +|.. + ++...+..|++++| |++++. ..+|+++
T Consensus 147 ~~~~~~t~tG~~~~----~~~i~~~~~~~~~~~~vD~~ss-~g~~--p--id~~~~~~d~~~~s~~K~~~gp-~G~g~~~ 216 (388)
T d2ch1a1 147 FLTHGDSSSGLLQP----LEGVGQICHQHDCLLIVDAVAS-LCGV--P--FYMDKWEIDAVYTGAQKVLGAP-PGITPIS 216 (388)
T ss_dssp EEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTB--C--CCTTTTTCCEEECCCC-CCCCC-SSCEEEE
T ss_pred eeeecccccccccc----hhhhcchhccccceeeeeeeec-cccc--c--cchhccCceEEEEccccccCCC-CeEEEEe
Confidence 77777777888877 8899999999999999999998 4322 2 23334567888887 678776 5888999
Q ss_pred eChhHHHHhhhccCCCCc----------------cCcCCCCCCcHHHHHHHHHHHHHHhhhcHH---HHHHHHHHHHHHh
Q 013204 287 VSPEVSEVIHSQSNTLGS----------------FSHGFTYSGHPVSCAVAIEALKIYKERNIV---EQVNKIAPKFQDG 347 (447)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~----------------~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~---~~~~~~~~~l~~~ 347 (447)
.+++..+........... .......+.+...+.+..++++.+...... .+.+......+..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (388)
T d2ch1a1 217 ISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEG 296 (388)
T ss_dssp ECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHhhhcccCccccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 998877765432211110 011123345556666667777766544332 2333333334444
Q ss_pred HhhccCCCce-eeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHH-cCceEEee-----CCEEEEe-cCCCCCH
Q 013204 348 VKAFSDSPII-GEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEK-HGMLVRVS-----GDNIMMS-PPFIMSP 419 (447)
Q Consensus 348 L~~l~~~~~~-~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~-----g~~iR~~-~~~~~t~ 419 (447)
+........+ ........++.+.+++.. ....+...|++ .||.+..+ ++.+|++ .....|+
T Consensus 297 ~~~~~~~~~~~~~~~rs~~v~~~~~p~g~-----------~~~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~ 365 (388)
T d2ch1a1 297 LGKMGLDIFVKDPRHRLPTVTGIMIPKGV-----------DWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTV 365 (388)
T ss_dssp HHHHTCCBSSCSGGGBCTTEEEEECCTTC-----------CHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSH
T ss_pred hhhcccccccCCHHHhCCeEEEEECCCCC-----------CHHHHHHHHhhcCCEEEeCCCccccCCEEEEcCCcCCCCH
Confidence 4433111111 111122334456665422 14457777765 48988764 4579999 3456789
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013204 420 EEVDELISKYGKALKAT 436 (447)
Q Consensus 420 e~i~~~~~~l~~~l~~~ 436 (447)
|+|++++++|+++|++.
T Consensus 366 edI~~ll~alke~L~~~ 382 (388)
T d2ch1a1 366 QKIQFYLYGFKESLKAT 382 (388)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999999874
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.70 E-value=1.7e-15 Score=147.82 Aligned_cols=312 Identities=13% Similarity=0.077 Sum_probs=179.1
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP 160 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 160 (447)
++.+.+++++.........++++|+++...++.+++... . ++++.|| .....|.+...++...|.....
T Consensus 98 ~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~---~-~~~~~vi-~~~~~H~s~~~a~~~~g~~~~~------ 166 (445)
T d3bc8a1 98 SLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHK---R-PKAKYII-WPRIDQKSCFKSMVTAGFEPVV------ 166 (445)
T ss_dssp HHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHH---C-TTCCEEE-EECCCCHHHHHHHHHTTCEEEE------
T ss_pred HHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHh---C-CCCCEEE-EcCcccHHHHHHHHHcCCeeEE------
Confidence 455667776643444578889999977666555543221 1 2334444 4666788877766655542111
Q ss_pred CCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCE
Q 013204 161 APFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240 (447)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~ 240 (447)
+..++..+.+ ..++++|++.+.....+.+++|++...+...|.+.+ +++|.++|++||++
T Consensus 167 ---v~~~~~~~~~-------------~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~----~~~i~~~~~~~~~~ 226 (445)
T d3bc8a1 167 ---IENVLEGDEL-------------RTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIP 226 (445)
T ss_dssp ---ECCEEETTEE-------------ECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCC
T ss_pred ---EEeeccCccc-------------ccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehh----HHHHHHHHHHhCCc
Confidence 0000001111 112488999887766567888888888887787776 99999999999999
Q ss_pred EEEehhhcCCCccc--c--ccccccCCCCCCeeeec--ccCCCcccceeEEEeC-hhHHHHhhhccCCCCccCcCCCCCC
Q 013204 241 FIADEVICAFGRLG--T--MFGCDKYSIKPDLVSFA--KALSSAYMPIGAILVS-PEVSEVIHSQSNTLGSFSHGFTYSG 313 (447)
Q Consensus 241 li~DEv~~g~g~~g--~--~~~~~~~~~~~d~v~~s--K~l~gg~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~ 313 (447)
+|+|+++.+. ..+ . .++... -..|+++++ |.++++ .+.|+++.+ +...+.+... ..+.....
T Consensus 227 l~vD~a~~~~-~~~~~~~~~~~~~~--~~vd~~~~s~hK~~~~p-~g~~~l~~~~~~~~~~~~~~-------~~~~~~~~ 295 (445)
T d3bc8a1 227 HVVNNAYGLQ-SSKCMHLIQQGARV--GRIDAFVQSLDKNFMVP-VGGAIIAGFNEPFIQDISKM-------YPGRASAS 295 (445)
T ss_dssp EEEECTTTTT-CHHHHHHHHHHHHH--SCCCEEEEEHHHHHSCC-SSCEEEEESCHHHHHHHHHH-------SCSCBCSH
T ss_pred EEEEccchhh-hhhccccchhccCc--CCcceEEecCccccccC-CCCceeeeCChHHHHHHHHH-------HhhcccCc
Confidence 9999998743 211 0 111111 136887765 877776 356667665 4566655421 11111121
Q ss_pred cHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc-cCCC-ceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHH
Q 013204 314 HPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSP-IIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYF 391 (447)
Q Consensus 314 ~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~ 391 (447)
..+.+.+++..+.............++.+++++.|.++ ..++ .+...........+.+....... ......+
T Consensus 296 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~------~~~~~~l 369 (445)
T d3bc8a1 296 PSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHH------DKAVTQL 369 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSS------SCHHHHH
T ss_pred chHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeeccccC------CCCHHHH
Confidence 22233323222222112334455566667777777665 2221 11122222233333333221110 1134457
Q ss_pred HHHHHHcCceEEe-----------------e--------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 013204 392 GAQCEKHGMLVRV-----------------S--------GDNIMMSPPFIMSPEEVDELISKYGKALKATEERV 440 (447)
Q Consensus 392 ~~~l~~~Gi~~~~-----------------~--------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~ 440 (447)
...|.+.||-... . ...+|++++..+|+||||.++++|++++++++++.
T Consensus 370 ~~~L~~~gI~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~~rk~~ 443 (445)
T d3bc8a1 370 GSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKEQ 443 (445)
T ss_dssp HHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcceeeccccccchhhhhhhhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 7778888763210 0 13489999999999999999999999999998754
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.67 E-value=4.4e-16 Score=148.87 Aligned_cols=302 Identities=14% Similarity=0.095 Sum_probs=180.0
Q ss_pred HHHHHHHHHhcC---cCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhc-ccCCccccC
Q 013204 80 LDLAKELLEMFT---ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAAS-LSGLPALHQ 155 (447)
Q Consensus 80 ~~l~~~l~~~~~---~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~-~~~~~~~~~ 155 (447)
.+..+.+.+.+. +.+.+.++|++|||++++.+++.+... . .+.+++++.....++....... ..+......
T Consensus 39 ~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~----~-~~gd~vlv~~~~~~~~~~~~~~~~~~~~~~~~ 113 (382)
T d2bkwa1 39 QRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILS----K-APNKNVLVVSTGTFSDRFADCLRSYGAQVDVV 113 (382)
T ss_dssp HHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCT----T-CSCCEEEEECSSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHh----c-CCCCceEEEEechhhhhhhhhccccccccccc
Confidence 344555555553 235668999999999999999865211 1 2346888888777765322221 111111000
Q ss_pred CCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHH
Q 013204 156 KFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVK 235 (447)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~ 235 (447)
...+ ++...+ .+++++.+.. .++..+++..+.+++|...+ ++.+.+.|+
T Consensus 114 -----------~~~~-------~~~~~~------~~~~~~~~~~---~~~~~v~~~~~~~~tg~~~~----~~~~~~~~~ 162 (382)
T d2bkwa1 114 -----------RPLK-------IGESVP------LELITEKLSQ---NSYGAVTVTHVDTSTAVLSD----LKAISQAIK 162 (382)
T ss_dssp -----------CCSS-------TTSCCC------HHHHHHHHHH---SCCSEEEEESEETTTTEECC----HHHHHHHHH
T ss_pred -----------cccC-------CCCccc------hhHHHHHhhh---ccchheeeeecccccccccc----chhhhhhcc
Confidence 0000 000000 2555555553 34567888888888888888 899999888
Q ss_pred hcC--CEEEEehhhcCCCccccccccccCCCCCCeeeec--ccCCCcccceeEEEeChhHHHHhhhccC--CCCc-----
Q 013204 236 KYD--ILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMPIGAILVSPEVSEVIHSQSN--TLGS----- 304 (447)
Q Consensus 236 ~~g--~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~~--~~~~----- 304 (447)
+++ +++++|-+++ +|.. +..++ ....|++++| |+++|+ .++|+++.+++..+....... ....
T Consensus 163 ~~~~~~~~~vDa~qs-~g~~--pid~~--~~giD~~~~s~~K~l~gP-~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~ 236 (382)
T d2bkwa1 163 QTSPETFFVVDAVCS-IGCE--EFEFD--EWGVDFALTASQKAIGAP-AGLSISLCSSRFMDYALNDSKNGHVHGYFSSL 236 (382)
T ss_dssp HHCTTSEEEEECTTT-TTTS--CCCTT--TTTCSEEEEESSSTTCCC-SCEEEEEECHHHHHHHTCHHHHCCCSCSTTCH
T ss_pred ccccceeeeeecccc-cccc--ccccc--ccCeeEEeecccccCcCC-CchhhhhccHHHHhhhhhcccCCCcccchhhh
Confidence 775 9999999998 5433 22233 3447988876 889887 799999999998766532100 0000
Q ss_pred ------------cCcCCCCCCcHHHHHHHHHHHHHHhhhcH---HHHHHHHHHHHHHhHhhccCCCc----eeeEeeeee
Q 013204 305 ------------FSHGFTYSGHPVSCAVAIEALKIYKERNI---VEQVNKIAPKFQDGVKAFSDSPI----IGEIRGTGL 365 (447)
Q Consensus 305 ------------~~~~~t~~~~~~~~~aa~a~l~~~~~~~~---~~~~~~~~~~l~~~L~~l~~~~~----~~~~~~~g~ 365 (447)
......++++...+.+..++|+.+.+++. .++.+++.+++++.+.+...... ....+ ...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~-s~~ 315 (382)
T d2bkwa1 237 RRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMS-AHG 315 (382)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTB-CSS
T ss_pred hhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhcc-CCc
Confidence 01122345666677777788988766543 34445566667776654311110 00111 112
Q ss_pred EEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee------CCEEEEe-cCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 366 ILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS------GDNIMMS-PPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 366 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------g~~iR~~-~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
+..+...+ ...+.+.|.++||.+..+ ++.+||+ .-+..++++|+.+++.|+.....+++
T Consensus 316 v~~~~~~~--------------~~~~~~~L~~~gi~i~~G~~~~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~~L~~ 381 (382)
T d2bkwa1 316 LTAVYVAD--------------PPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR 381 (382)
T ss_dssp CEEEECSC--------------HHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred EEEEcCCC--------------HHHHHHHHHHCCeEEECCCChhhcCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHHHCc
Confidence 23344332 345778889999998765 2469998 33566788899888888776665554
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.63 E-value=2.3e-14 Score=140.30 Aligned_cols=324 Identities=12% Similarity=0.068 Sum_probs=169.9
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhh-hhcccCC-cc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLI-AASLSGL-PA 152 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~-~~~~~~~-~~ 152 (447)
+.....+.++++++++ +.++++|+++||+++..|+-.+. . .+++.| +.+...|.+... ...+.+. +.
T Consensus 64 ~~~~i~eae~~~A~~~---ga~~a~f~~~Gtt~~n~a~i~a~------~-~~gd~V-i~~~~~H~Sv~~~~~~l~~~~~~ 132 (462)
T d1c4ka2 64 HEGPAVAAEKHAARVY---NADKTYFVLGGSSNANNTVTSAL------V-SNGDLV-LFDRNNHKSVYNSALAMAGGRPV 132 (462)
T ss_dssp TBTHHHHHHHHHHHHT---TCSEEEEESSHHHHHHHHHHHHH------C-CTTCEE-EEETTCCHHHHHHHTTTTCCEEE
T ss_pred CCHHHHHHHHHHHHHh---CCCeEEEECCchHHHHHHHHHHh------c-CCCCeE-EecccchHHHHHHHHHHhcCCce
Confidence 5567889999999987 56799999999887766654432 1 223444 456777887653 3333332 22
Q ss_pred ccCC-CCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHH-----HHhhCCCcEEEEEEccccCCCCCccCChhH
Q 013204 153 LHQK-FDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDL-----ILKEGPETIAAFIAEPVIGAGGVIPPPATY 226 (447)
Q Consensus 153 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~-----l~~~~~~~~a~vi~epv~~~~G~~~~~~~~ 226 (447)
+... .+ +......++ .+.+.. +.+++. +.......+..+++..+++..|.+.+
T Consensus 133 ~~~~~~~-~~g~~~~~~-------------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~d---- 191 (462)
T d1c4ka2 133 YLQTNRN-PYGFIGGIY-------------DSDFDE---KKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYN---- 191 (462)
T ss_dssp EECEEEC-TTCCEEEEC-------------GGGSCH---HHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEEC----
T ss_pred eeecccc-cccccCCCC-------------hHHhhH---HHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhh----
Confidence 2110 11 000000000 001100 112211 11111223445566677777888877
Q ss_pred HHHHHHHHHhcCCEEEEehhhcCCCcccc--ccccccCC----C--CCCeeeec--ccCCCcccceeEEE-eChhHHH--
Q 013204 227 FEKVQAVVKKYDILFIADEVICAFGRLGT--MFGCDKYS----I--KPDLVSFA--KALSSAYMPIGAIL-VSPEVSE-- 293 (447)
Q Consensus 227 l~~l~~l~~~~g~~li~DEv~~g~g~~g~--~~~~~~~~----~--~~d~v~~s--K~l~gg~~~~g~~~-~~~~~~~-- 293 (447)
+++|.++|++||++|++||+|........ +......+ . ..|++++| |.+++. ..|.++ .+...+.
T Consensus 192 l~~I~~ia~~~g~~l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~--~~g~ll~~~~~~~~~~ 269 (462)
T d1c4ka2 192 AHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGF--SQTSQIHKKDSHIKGQ 269 (462)
T ss_dssp HHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCC--TTCEEEEEECGGGTTS
T ss_pred HHHHHHHHHHcCCEEEEechhhccccccCcCCcchhhccccccccCCccEEEEecCcccccc--cceEEEEecccccccc
Confidence 99999999999999999999862211111 11111111 1 24777765 888763 223444 3333221
Q ss_pred -------HhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHhHhhccCCCce---eeE
Q 013204 294 -------VIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQDGVKAFSDSPII---GEI 360 (447)
Q Consensus 294 -------~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~---~~~ 360 (447)
.+.. ......+.+++...+++..++...+.. +++.++..++.+++++.++++...-.. ..+
T Consensus 270 ~~~~~~~~~~~------~~~~~~t~sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v 343 (462)
T d1c4ka2 270 LRYCDHKHFNN------SFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVV 343 (462)
T ss_dssp TTCCCHHHHHH------HHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEE
T ss_pred chhhhHHHHHH------hhhhcccCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccc
Confidence 1110 001112444455544444444544432 345667777888888888765221100 000
Q ss_pred ee----------------------------------eeeE-----EEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCce
Q 013204 361 RG----------------------------------TGLI-----LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGML 401 (447)
Q Consensus 361 ~~----------------------------------~g~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~ 401 (447)
.+ ...+ +.+...........++....-+..+.+.|.++||.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~~L~~~gI~ 423 (462)
T d1c4ka2 344 NGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGII 423 (462)
T ss_dssp TTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCC
T ss_pred ccccccccchHhhhcccchhccCCcchhccccccCccceecccceeEEecCCccccccchhhcCCcHHHHHHHHHHcCCe
Confidence 00 0000 11111110000000111111245677888899998
Q ss_pred EEeeC-CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 402 VRVSG-DNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 402 ~~~~g-~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
+...+ +.+|++.+..+|++++|+++++|++..+.+.+
T Consensus 424 ~e~~~~~~i~~~~s~~~T~edid~li~aL~ei~r~~~~ 461 (462)
T d1c4ka2 424 PEKSDLNSILFLMTPAETPAKMNNLITQLLQLQRLIEE 461 (462)
T ss_dssp CSEECSSEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred eeccCCCeEEEEecCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 76554 57999999999999999999999988776543
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.63 E-value=2.8e-15 Score=143.83 Aligned_cols=282 Identities=12% Similarity=0.031 Sum_probs=165.5
Q ss_pred HHHHHHHHHHhc---Cc--CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccc
Q 013204 79 SLDLAKELLEMF---TA--SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPAL 153 (447)
Q Consensus 79 ~~~l~~~l~~~~---~~--~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 153 (447)
..+|.+.+.+++ .. .+..+|++++|.+|++..++..+........-.+.++||+..|.|..+...+....+.. +
T Consensus 102 ~~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~~~-~ 180 (425)
T d2hoxa1 102 SFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKG-Y 180 (425)
T ss_dssp CHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTT-E
T ss_pred CHHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHHHHcCCCC-C
Confidence 356777777664 22 24447999999999999999876311110001234789999999977754443322211 0
Q ss_pred cCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHH
Q 013204 154 HQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAV 233 (447)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l 233 (447)
. ...+ .+.+++. ..+++...+++.|.|++|- +..
T Consensus 181 ~----------~~~D---------------------~~~~~~~---~~~~~~ii~l~sPnNPtG~-l~~----------- 214 (425)
T d2hoxa1 181 V----------WAGN---------------------AANYVNV---SNPEQYIEMVTSPNNPEGL-LRH----------- 214 (425)
T ss_dssp E----------EEEE---------------------GGGGTTC---SCGGGEEEEEESSCTTTCC-CCC-----------
T ss_pred c----------cCCC---------------------HHHHHhh---CCCCceEEEEECCCCCCcc-hhh-----------
Confidence 0 0000 0222221 2234455677777777763 311
Q ss_pred HHhcCCEEEEehhhcCCCccccccccccCCC-CCCee--eecccCCCcccceeEEEeC-hhHHHHhhhccCCCCccCcCC
Q 013204 234 VKKYDILFIADEVICAFGRLGTMFGCDKYSI-KPDLV--SFAKALSSAYMPIGAILVS-PEVSEVIHSQSNTLGSFSHGF 309 (447)
Q Consensus 234 ~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~-~~d~v--~~sK~l~gg~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~ 309 (447)
+..+++.+|.||+|-+...+. .... ..+++ ++||.++..++|+|+++++ +.+++.+.. +....
T Consensus 215 ~v~~~~~~I~DEaY~~~~f~~------~~~~~~~~Ivl~S~SK~fglaGlRiGw~i~~~~~i~~~~~~-------~~~~~ 281 (425)
T d2hoxa1 215 AVIKGCKSIYDMVYYWPHYTP------IKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLN-------YMTKN 281 (425)
T ss_dssp CSSTTCEEEEECTTCSTTTSC------CCSCBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHH-------HHHHH
T ss_pred hhhhCCEEEEeccccCccccc------hhhhcCCeEEEEeCHHhccCcchheeeEEeCCHHHHHHHHH-------hhccC
Confidence 234689999999995332111 1111 22344 5799888655999997765 567666652 22234
Q ss_pred CCCCcHHHHHHHHHHHHHHhh---------hc----HHHHHHHHHHHHHHhHhhccC-----CCc-------eeeEeeee
Q 013204 310 TYSGHPVSCAVAIEALKIYKE---------RN----IVEQVNKIAPKFQDGVKAFSD-----SPI-------IGEIRGTG 364 (447)
Q Consensus 310 t~~~~~~~~~aa~a~l~~~~~---------~~----~~~~~~~~~~~l~~~L~~l~~-----~~~-------~~~~~~~g 364 (447)
+++.+.+++.++.++|+.... .+ ..+.++++.+++++.|++... .+. .......+
T Consensus 282 ~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~ 361 (425)
T d2hoxa1 282 TEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSP 361 (425)
T ss_dssp TSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCC
T ss_pred cccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeccCCccceeeeeeccCCCc
Confidence 566777888888888764311 11 234455556666666665421 110 01223344
Q ss_pred eEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee------CCEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 365 LILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS------GDNIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 365 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
.+..+.+..+.. ..+.+.|+++||++.++ ++.+|++ +..++|++++++++|++.++
T Consensus 362 ~f~wl~~~~~~~------------~~~~~lL~e~gI~v~pGs~FG~~~~yvRis--l~~~~e~ld~~l~rL~~~v~ 423 (425)
T d2hoxa1 362 SYAWVKCEWEED------------KDCYQTFQNGRINTQNGVGFEASSRYVRLS--LIKTQDDFDQLMYYLKDMVK 423 (425)
T ss_dssp SEEEEEECSGGG------------CSHHHHHHHTTEECEEGGGGTSCTTEEEEE--CSSCHHHHHHHHHHHHHHHT
T ss_pred ceeeeeCCCChH------------HHHHHHHHhCCEEEEechhcCCCCCEEEEE--ecCCHHHHHHHHHHHHHHHh
Confidence 455555433221 12456788999999975 2579999 78899999999999999875
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.62 E-value=1.9e-14 Score=139.69 Aligned_cols=215 Identities=13% Similarity=0.088 Sum_probs=132.6
Q ss_pred HHHHHHHHHhh-CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCe
Q 013204 190 ANNLEDLILKE-GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDL 268 (447)
Q Consensus 190 ~~~le~~l~~~-~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~ 268 (447)
+++|++.+.+. ..+.+++|+++..+..+|.+.+ +++|.++|++||+++|+|++|.+.................|+
T Consensus 196 ~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~----l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~~~D~ 271 (434)
T d2z67a1 196 VEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDA 271 (434)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSE
T ss_pred HHHHHHHHHhhhhcCCceEEEeccCcCCCccccC----HHHHHHHHHHhCCeEEEeccchhhhhhccccccccccCCcce
Confidence 48888888653 2345667888888777887766 999999999999999999998643111001111112345788
Q ss_pred eeec--ccCCCcccceeEEEeC-hhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 013204 269 VSFA--KALSSAYMPIGAILVS-PEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQ 345 (447)
Q Consensus 269 v~~s--K~l~gg~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~ 345 (447)
++++ |.++++ .+.|++..+ +.+++.+.. ...+.+...+...+.+++..+......+..++..++.++++
T Consensus 272 ~~~s~hK~l~~~-~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~~a~~l~ 343 (434)
T d2z67a1 272 VVSSSDKNLLTP-IGGGLVYSTDAEFIKEISL-------SYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLD 343 (434)
T ss_dssp EEEEHHHHHCCC-SSCEEEEESCHHHHHHHHT-------TSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCccccccC-CCccccccCcHHHHHHHHh-------hcccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 8876 888776 466667655 556666652 12222333233333333333332223445677777888888
Q ss_pred HhHhhcc---CCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee----------------C
Q 013204 346 DGVKAFS---DSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS----------------G 406 (447)
Q Consensus 346 ~~L~~l~---~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----------------g 406 (447)
+.|+++. ...+... + ......+.+.. ....+...|.++||..... .
T Consensus 344 ~~L~~l~~~~g~~ll~~-~-~~~~~~~~~~~-------------~~~~l~~~L~~~gI~g~~v~~~l~~~g~~~~~~~~~ 408 (434)
T d2z67a1 344 ELLNDLSKKTGGKFLDV-E-SPIASCISVNS-------------DPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTH 408 (434)
T ss_dssp HHHHHHHHHSSCCBCCC-C-CSSEEEEECSS-------------CHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSC
T ss_pred HHHHHhhhhcCceecCC-C-CCceeeeecCC-------------CHHHHHHHHHHcCCeeeehhhhccccCeeeecccCC
Confidence 8888762 1122211 1 11111222221 1345778899999854311 1
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHH
Q 013204 407 DNIMMSPPFIMSPEEVDELISKYGK 431 (447)
Q Consensus 407 ~~iR~~~~~~~t~e~i~~~~~~l~~ 431 (447)
+.+|++.+..+|+||||+++++|++
T Consensus 409 ~~l~~~~s~~~T~edID~~i~~L~k 433 (434)
T d2z67a1 409 DYIVMNAAIGVRTEDIVNSVSKLEK 433 (434)
T ss_dssp CEEEEECCTTCCHHHHHHHHHHHHT
T ss_pred CeEEEecCCCCCHHHHHHHHHHHhc
Confidence 5699999999999999999999986
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.61 E-value=8.8e-14 Score=130.40 Aligned_cols=317 Identities=14% Similarity=0.086 Sum_probs=181.1
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcce
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 129 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~ 129 (447)
-+|+|++||.+.. ..|+. ..-.+...+..+.+++++. .+.+-++|+.|||+|++.++..+. .++++
T Consensus 11 v~~~V~~am~~~~----~~hr~-~~f~~i~~~~~~~l~~ll~-~~~~~i~~~gsgT~a~e~~~~nl~--------~~g~~ 76 (348)
T d1iuga_ 11 LHPKALEALARPQ----LHHRT-EAAREVFLKARGLLREAFR-TEGEVLILTGSGTLAMEALVKNLF--------APGER 76 (348)
T ss_dssp CCHHHHHHHHSCC----CCTTS-HHHHHHHHHHHHHHHHHHT-CSSEEEEEESCHHHHHHHHHHHHC--------CTTCE
T ss_pred CCHHHHHHhcCCC----CCCCC-HHHHHHHHHHHHHHHHHhC-CCCCEEEEeCchHHHHHHHHHhcc--------ccccc
Confidence 4678887765432 12211 0012334455666666664 455678889999999999998653 33567
Q ss_pred EEEEcCCCccchhhhhc-ccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEE
Q 013204 130 FIARQKSYHGSTLIAAS-LSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAF 208 (447)
Q Consensus 130 vi~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~v 208 (447)
++++..++.|....... ..+... ...+.+.. ..+.. ++ +. ...+..|
T Consensus 77 vlv~~~G~f~~~~~~~a~~~~~~~------------~~~~~~~g---~~~~~----------~~----~~---~~~~~~v 124 (348)
T d1iuga_ 77 VLVPVYGKFSERFYEIALEAGLVV------------ERLDYPYG---DTPRP----------ED----VA---KEGYAGL 124 (348)
T ss_dssp EEEEECSHHHHHHHHHHHHTTCEE------------EEEECCTT---CCCCT----------TT----SC---CSSCSEE
T ss_pred ceeecchHHHHHHHHHHHhcCccc------------ccccccCC---Ccccc----------cc----cc---ccCCCee
Confidence 88877776554322221 111111 01111000 00000 00 01 1234456
Q ss_pred EEccccCCCCCccCChhHHHHHHHHHHhcC--CEEEEehhhcCCCccccccccccCCCCCCeeeec--ccCCCcccceeE
Q 013204 209 IAEPVIGAGGVIPPPATYFEKVQAVVKKYD--ILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMPIGA 284 (447)
Q Consensus 209 i~epv~~~~G~~~~~~~~l~~l~~l~~~~g--~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l~gg~~~~g~ 284 (447)
.+....++.|.+.| +++|.++|++|+ +++++|-+++ +|.. +..++.+ ..|++++| |+++|. .++|+
T Consensus 125 ~~~h~eTstG~~~~----i~~i~~~~~~~~~~~l~~vDavss-~g~~--~i~~d~~--~iD~~~~~sqK~l~gp-pG~~~ 194 (348)
T d1iuga_ 125 LLVHSETSTGALAD----LPALARAFKEKNPEGLVGADMVTS-LLVG--EVALEAM--GVDAAASGSQKGLMCP-PGLGF 194 (348)
T ss_dssp EEESEETTTTEECC----HHHHHHHHHHHCTTCEEEEECTTT-BTTB--CCCSGGG--TCSEEEEESSSTTCCC-SCEEE
T ss_pred EEEecchhhhhhcc----HHHHHHHHHhhhccceeechhhhc-cccc--ccccccc--cCCEEEeccccceecC-Cceee
Confidence 66666666677887 999999999985 7899999987 5433 2223333 36888765 899887 68999
Q ss_pred EEeChhHHHHhhhccCCC------CccC-cCCCCCCcHHHHHHHHHHHHHHhhhcHHHHH---HHHHHHHHHhHhhccCC
Q 013204 285 ILVSPEVSEVIHSQSNTL------GSFS-HGFTYSGHPVSCAVAIEALKIYKERNIVEQV---NKIAPKFQDGVKAFSDS 354 (447)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~------~~~~-~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~---~~~~~~l~~~L~~l~~~ 354 (447)
++.+++.++.+...+... .... ....++++...+.+..++|+.+.+. ..++. +.....++..++.+ ..
T Consensus 195 v~~s~~~le~~~~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-gl 272 (348)
T d1iuga_ 195 VALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEHLALKAWQNALLYGVGEEG-GL 272 (348)
T ss_dssp EEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred eeechHHHhhhcccccccchhhhhhhhccCcccccccchHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHhhhhhhh-hh
Confidence 999999887654321000 0001 1223344555666666788876543 22222 11222333333332 11
Q ss_pred CceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-----CCEEEEecCCCCCHHHHHHHHHHH
Q 013204 355 PIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-----GDNIMMSPPFIMSPEEVDELISKY 429 (447)
Q Consensus 355 ~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----g~~iR~~~~~~~t~e~i~~~~~~l 429 (447)
......+ ...+..+.+++.. ....+.+.|.++|+.+.++ +..+||+..-..+.+|++++++.|
T Consensus 273 ~~~~~~~-s~~v~~~~~P~g~-----------~~~~~~~~l~~~gi~i~~G~~~l~~~~~RIg~mG~~~~~d~~~~~~~l 340 (348)
T d1iuga_ 273 RPVPKRF-SPAVAAFYLPEGV-----------PYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMF 340 (348)
T ss_dssp EESCSSB-CTTCEEEECCTTC-----------CHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHH
T ss_pred ccChhhc-CCeEEEEECCCCC-----------CHHHHHHHHHHCCeEEEcCccccCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 1111111 1223455554321 1456888899999998765 357999966679999999999999
Q ss_pred HHHHHHH
Q 013204 430 GKALKAT 436 (447)
Q Consensus 430 ~~~l~~~ 436 (447)
+++++++
T Consensus 341 ~~~l~~~ 347 (348)
T d1iuga_ 341 REVLEEI 347 (348)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999875
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=3.1e-13 Score=130.83 Aligned_cols=361 Identities=11% Similarity=0.015 Sum_probs=200.9
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC----CCCeEEEeCChh
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS----KMAKVFFTNSGS 105 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~~v~~~~sGs 105 (447)
.|||--+++.+... -+-+|++.+.+.+.+.+.......+....+...+..+.+++++... +..--.+|+|||
T Consensus 50 ~dg~~~~n~asf~~----t~~~~~~~~l~~~~~~~N~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgS 125 (450)
T d1pmma_ 50 LDGNARQNLATFCQ----TWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSS 125 (450)
T ss_dssp GSCCGGGBCSCCSC----CCCCHHHHHHHHHTTTCBTTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHH
T ss_pred cCCCcccccccccc----CCCCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchH
Confidence 35654444443211 1357898888888775522211110011233344555667666321 112358999999
Q ss_pred hHHHHHHHHHHHHHH----hcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC-cccCCCCCC
Q 013204 106 EANDTQVKLVWYYNN----ALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH-YWRYAHPGE 180 (447)
Q Consensus 106 eA~~~Al~~~~~~~~----~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 180 (447)
|||..|+.+++...+ ..|......+++ ....|.++.-+...-|... ..++..+ .++
T Consensus 126 eA~~~a~~aar~~~~~~~~~~g~~~~~~~~~-~~~~H~s~~Kaa~~~gi~~------------~~v~~~~~~~~------ 186 (450)
T d1pmma_ 126 EACMLGGMAMKWRWRKRMEAAGKPTDKPNLV-CGPVQICWHKFARYWDVEL------------REIPMRPGQLF------ 186 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCSCCEEE-ESSCCHHHHHHHHHTTCEE------------EECCCBTTBCS------
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCceEE-ecccHHHHHHHHHHcCCCc------------eEeeecCCCCc------
Confidence 999999998875332 233344444555 4567888765555444321 1111111 011
Q ss_pred ChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHH------HHhcCCEEEEehhhcCCCccc
Q 013204 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAV------VKKYDILFIADEVICAFGRLG 254 (447)
Q Consensus 181 ~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l------~~~~g~~li~DEv~~g~g~~g 254 (447)
.+.++|++.+. +.+.+|++.......|.+-| +++|.++ |+++|+++++|.++.|+-.
T Consensus 187 -------~d~~~L~~~i~----~~t~~Vv~t~gtt~tG~~dp----v~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~-- 249 (450)
T d1pmma_ 187 -------MDPKRMIEACD----ENTIGVVPTFGVTYTGNYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLA-- 249 (450)
T ss_dssp -------CCHHHHHHHCC----TTEEEEECBBSCTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTH--
T ss_pred -------CcHHHHHHHhh----hCceEEEeeeeeccCCCccc----cchhhHHHHHHHHHhccCcEEEeehhhcccee--
Confidence 01367777664 45667777777777777766 5555554 5678999999999876521
Q ss_pred ccccccc----CCC-CCCeeeec--ccCCCcccceeEEEeChh-HH-HHhhhccCCCCccC--cCCCCCCcHHHHHHHHH
Q 013204 255 TMFGCDK----YSI-KPDLVSFA--KALSSAYMPIGAILVSPE-VS-EVIHSQSNTLGSFS--HGFTYSGHPVSCAVAIE 323 (447)
Q Consensus 255 ~~~~~~~----~~~-~~d~v~~s--K~l~gg~~~~g~~~~~~~-~~-~~~~~~~~~~~~~~--~~~t~~~~~~~~~aa~a 323 (447)
++.... +++ ..|.++++ |.+.++ .++|+++.+.. .. ..+.......+.-. .+..++.+.....+.++
T Consensus 250 -p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~ 327 (450)
T d1pmma_ 250 -PFVAPDIVWDFRLPRVKSISASGHKFGLAP-LGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYY 327 (450)
T ss_dssp -HHHCTTCCCSTTSTTEEEEEEETTTTTCCC-SSCEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHH
T ss_pred -eeechhhhhhhcccceeEeecChhhccCCC-CCeeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHH
Confidence 111111 233 36778876 655555 68899988754 22 11111111111000 01122223334444555
Q ss_pred HHHHHhhhc---HHHHHHHHHHHHHHhHhhccCCCceeeEeee--eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc
Q 013204 324 ALKIYKERN---IVEQVNKIAPKFQDGVKAFSDSPIIGEIRGT--GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH 398 (447)
Q Consensus 324 ~l~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~--g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 398 (447)
.+..+..++ ..++..++.+++.+.|++.....++...... -..+.+.+.+..... + ....+.++|.++
T Consensus 328 ~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~~~~~~~--~-----~~~~l~~~L~~~ 400 (450)
T d1pmma_ 328 EFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPG--Y-----TLYDLSERLRLR 400 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEECCTTTBSSEEEEEECTTCCCS--S-----CHHHHHHHHHTT
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCCceEEEEEecCCcccCC--C-----CHHHHHHHHHHc
Confidence 566554443 4566677778888888776433333222111 123445554322111 0 134578899999
Q ss_pred CceEE----eeC----CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013204 399 GMLVR----VSG----DNIMMSPPFIMSPEEVDELISKYGKALKATEER 439 (447)
Q Consensus 399 Gi~~~----~~g----~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 439 (447)
|.++. +.. ..+|+.+.-..|++++|++++.|+++++++++.
T Consensus 401 Gw~v~~~~~p~~~~~~~~lRvvv~~~~t~e~~d~lv~dl~~~v~~l~~~ 449 (450)
T d1pmma_ 401 GWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDH 449 (450)
T ss_dssp TCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCeeeccCcCCCcCCcEEEEEEccCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 97653 111 358999988899999999999999999988763
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.53 E-value=3.1e-12 Score=121.39 Aligned_cols=315 Identities=14% Similarity=0.148 Sum_probs=182.1
Q ss_pred CHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceE
Q 013204 51 EPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKF 130 (447)
Q Consensus 51 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~v 130 (447)
.++-++++.+.++.+... .-+...++++++++.+ +.+.+++++|||.|+..|++.+ +-+.+++|
T Consensus 11 ~~~~~~~~~~~~~~~~~~------~G~~v~~~E~~la~~~---g~~~ai~~~sgt~Al~~al~al-------~~~~gdeV 74 (376)
T d1mdoa_ 11 GAEELAAVKTVLDSGWIT------TGPKNQELEAAFCRLT---GNQYAVAVSSATAGMHIALMAL-------GIGEGDEV 74 (376)
T ss_dssp CHHHHHHHHHHHHHTCCS------SSHHHHHHHHHHHHHH---CCSEEEEESCHHHHHHHHHHHT-------TCCTTCEE
T ss_pred CHHHHHHHHHHHhcCCCc------CCHHHHHHHHHHHHHH---CcCeEEEeCCHHHHHHHHHHHh-------CCCCCCEE
Confidence 356667888888764322 1246778999999997 5568999999999999999865 21345788
Q ss_pred EEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEE
Q 013204 131 IARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIA 210 (447)
Q Consensus 131 i~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~ 210 (447)
|+...+|+.........+..+.+.. ..... + .. ++++|++.+. +.+++|++
T Consensus 75 i~~~~~~~~~~~ai~~~g~~pv~~d-~~~~~-----------~-----~~--------d~~~l~~~i~----~~tkaIi~ 125 (376)
T d1mdoa_ 75 ITPSMTWVSTLNMIVLLGANPVMVD-VDRDT-----------L-----MV--------TPEHIEAAIT----PQTKAIIP 125 (376)
T ss_dssp EEESSSCHHHHHHHHHTTCEEEEEC-BCTTT-----------C-----CB--------CHHHHHHHCC----TTEEEECC
T ss_pred EEecccccccccchhccccceeeec-ccccc-----------c-----CC--------CHHHHHHhcC----CCCeEEEE
Confidence 8888777776655555444332211 10000 0 00 1377777765 35677776
Q ss_pred ccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeee--cccCCCcccceeEEEe-
Q 013204 211 EPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF--AKALSSAYMPIGAILV- 287 (447)
Q Consensus 211 epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~--sK~l~gg~~~~g~~~~- 287 (447)
.... |...+ +++|.++|++||++||.|.+|+ +|..-.......+| ..+.+| .|.++.| ..|+++.
T Consensus 126 ~h~~---G~~~~----~~~i~~i~~~~~i~vIeD~a~a-~g~~~~~~~~g~~g--~~~~Sf~~~K~l~~g--~GG~i~t~ 193 (376)
T d1mdoa_ 126 VHYA---GAPAD----LDAIYALGERYGIPVIEDAAHA-TGTSYKGRHIGARG--TAIFSFHAIKNITCA--EGGIVVTD 193 (376)
T ss_dssp BCGG---GCCCC----HHHHHHHHHHHTCCBCEECTTC-TTCEETTEETTSSS--EEEEECCTTSSSCSS--SCEEEEES
T ss_pred eCCC---CCccc----hhHHHHHHHhcCceEEeccchh-ccCeeCCeeccccc--CccccCCCcCCCCCC--CCCEEEEe
Confidence 5544 44444 8999999999999999999997 54321110011111 122233 3877654 2355555
Q ss_pred ChhHHHHhhhccCCCC-----------------ccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhh
Q 013204 288 SPEVSEVIHSQSNTLG-----------------SFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA 350 (447)
Q Consensus 288 ~~~~~~~~~~~~~~~~-----------------~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~ 350 (447)
++++.+.+........ ....+..+..+.+.++.+.+-|+.+ ++..++.+++.+++.+.|++
T Consensus 194 ~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~~~--~~~~~~r~~~~~~~~~~L~~ 271 (376)
T d1mdoa_ 194 NPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKL--DALNARRAAIAAQYHQAMAD 271 (376)
T ss_dssp CHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHhhcccCCcccccccccccccccccchhcccccccchhhhhhhhhhhhhh--hHHHHHHhhhhhhhhhhccc
Confidence 4556655533211000 0111233344556666555555533 45567777788888888877
Q ss_pred ccCCCce----eeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee---------------------
Q 013204 351 FSDSPII----GEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS--------------------- 405 (447)
Q Consensus 351 l~~~~~~----~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--------------------- 405 (447)
+...... ........+ .+.+....... ....+.+.|.++||-++..
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------~Rd~l~~~L~~~gI~~~~~y~~~~~~~~~~~~~~~~~~p~ 342 (376)
T d1mdoa_ 272 LPFQPLSLPSWEHIHAWHLF-IIRVDEARCGI--------TRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPD 342 (376)
T ss_dssp SSCEECCCCSSCEECCCSCE-EEECCHHHHSS--------CHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHH
T ss_pred cccccccccccccccccccc-ccccccccchh--------hHHHHHHHHHHCCCCeeeECcchhcCHHHHhhCCCCCCHH
Confidence 6211111 011111111 11111110000 1245888999999876521
Q ss_pred -----CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 406 -----GDNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 406 -----g~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
.+.+.+-.+...|++|++++++.|++++
T Consensus 343 a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~ 375 (376)
T d1mdoa_ 343 TEWNSERICSLPLFPDMTESDFDRVITALHQIA 375 (376)
T ss_dssp HHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 1346766666789999999999998865
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.52 E-value=5.9e-12 Score=122.35 Aligned_cols=317 Identities=12% Similarity=0.025 Sum_probs=181.9
Q ss_pred HHHHHHHHHHHhcCcC--------CCCeEEEeCChhhHHHHHHHHHHHHHHhc------CCC----CcceEEEEcCCCcc
Q 013204 78 PSLDLAKELLEMFTAS--------KMAKVFFTNSGSEANDTQVKLVWYYNNAL------GRP----NKKKFIARQKSYHG 139 (447)
Q Consensus 78 ~~~~l~~~l~~~~~~~--------~~~~v~~~~sGseA~~~Al~~~~~~~~~~------~~~----~~~~vi~~~~~yhg 139 (447)
...+..+++++++... ....-++++|||+||..|+..+|.....+ |-. .++-+++....-|-
T Consensus 114 iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~ 193 (476)
T d1js3a_ 114 LETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHS 193 (476)
T ss_dssp HHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCH
T ss_pred HHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccccH
Confidence 3344556677766321 12356899999999999999987543110 100 12446666777788
Q ss_pred chhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhh--CCCcEEEEEEccccCCC
Q 013204 140 STLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE--GPETIAAFIAEPVIGAG 217 (447)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~a~vi~epv~~~~ 217 (447)
+..-+...-|... ..+++.+.++ . +.++|++.+.+. ....+.+|+........
T Consensus 194 Si~ka~~~lGl~~------------~~v~~d~~~~-----m--------d~~~L~~~i~~~~~~g~~p~~VvataGtt~~ 248 (476)
T d1js3a_ 194 SVERAGLIGGVKL------------KAIPSDGKFA-----M--------RASALQEALERDKAAGLIPFFVVATLGTTSC 248 (476)
T ss_dssp HHHHHHHHHTCEE------------EEECCCTTSC-----C--------CHHHHHHHHHHHHHTTCEEEEEEEEBSCTTT
T ss_pred HHHHHHHhcCceE------------EEeccCCCCC-----c--------CHHHHHHHHHHHHhcCCCcEEEeecCCCccc
Confidence 7655555444321 1233322221 1 147788877652 23346667777777777
Q ss_pred CCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCC-CCCeeeec--ccCCCcccceeEEEeChh-HH-
Q 013204 218 GVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSI-KPDLVSFA--KALSSAYMPIGAILVSPE-VS- 292 (447)
Q Consensus 218 G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~-~~d~v~~s--K~l~gg~~~~g~~~~~~~-~~- 292 (447)
|.+-| +++|.++|++||+++++|.++.|+...-...-....++ ..|.++++ |.+..+ .+.|+++.++. ..
T Consensus 249 G~iDp----l~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P-~~~g~~l~r~~~~~~ 323 (476)
T d1js3a_ 249 CSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN-FDCSAMWVKRRTDLT 323 (476)
T ss_dssp CCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC-SSCEEEEESCHHHHH
T ss_pred eeecc----HHHHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccC-CcceeecccchHHHH
Confidence 88877 99999999999999999999887643322222223345 37888875 888777 57888888753 22
Q ss_pred HHhhhccCCC-------Cc---cCcCCCCCCcHHHHHHHHHHHHHHhhhcH---HHHHHHHHHHHHHhHhhccCCCceee
Q 013204 293 EVIHSQSNTL-------GS---FSHGFTYSGHPVSCAVAIEALKIYKERNI---VEQVNKIAPKFQDGVKAFSDSPIIGE 359 (447)
Q Consensus 293 ~~~~~~~~~~-------~~---~~~~~t~~~~~~~~~aa~a~l~~~~~~~~---~~~~~~~~~~l~~~L~~l~~~~~~~~ 359 (447)
..+....... .. +...+.-.+-+......+.+++.+..+++ .++..++.+++.+.|++.++..++.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~- 402 (476)
T d1js3a_ 324 GAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCA- 402 (476)
T ss_dssp GGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECS-
T ss_pred HHHhcChhhhccccccccccccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEEC-
Confidence 2221110000 00 00001111112222334555665555444 4555566777777776653322221
Q ss_pred EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcC-ceEEee---CC-EEEEecC-CCCCHHHHHHHHHHHHHHH
Q 013204 360 IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHG-MLVRVS---GD-NIMMSPP-FIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 360 ~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-i~~~~~---g~-~iR~~~~-~~~t~e~i~~~~~~l~~~l 433 (447)
+..-.++.+.+...+ .....+.+++.+.| +++++. |. .+|++.. ...+++||+.+++.|++..
T Consensus 403 -~p~l~iV~Fr~~~~d----------~~n~~l~~~l~~~G~~~~s~t~~~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a 471 (476)
T d1js3a_ 403 -EVTLGLVCFRLKGSD----------GLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLA 471 (476)
T ss_dssp -CCCSSEEEEEESSCH----------HHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred -CCceEEEEEEccCCh----------HHHHHHHHHHHhcCCEEEeeeeECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 122233444443211 13456778888887 334432 22 4899864 5678999999999999998
Q ss_pred HHH
Q 013204 434 KAT 436 (447)
Q Consensus 434 ~~~ 436 (447)
+++
T Consensus 472 ~~l 474 (476)
T d1js3a_ 472 AEL 474 (476)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.41 E-value=5.2e-11 Score=112.97 Aligned_cols=318 Identities=9% Similarity=0.060 Sum_probs=184.5
Q ss_pred CHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceE
Q 013204 51 EPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKF 130 (447)
Q Consensus 51 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~v 130 (447)
..+-.+++.+.++.+..... .-+...++++++++++ +.+.+++++|||.|+..|++.+ +-+.+++|
T Consensus 12 ~~~~~~~~~~~l~~g~~~~~----~g~~v~~fE~~~a~~~---g~~~~v~~~SGt~Al~lal~~l-------~~~~gdeV 77 (384)
T d1b9ha_ 12 DDAERNGLVRALEQGQWWRM----GGDEVNSFEREFAAHH---GAAHALAVTNGTHALELALQVM-------GVGPGTEV 77 (384)
T ss_dssp CHHHHHHHHHHHHTSCCBTT----TCSHHHHHHHHHHHHT---TCSEEEEESCHHHHHHHHHHHT-------TCCTTCEE
T ss_pred CHHHHHHHHHHHHcCCeeec----CCHHHHHHHHHHHHHH---CcCeEEEeCCHHHHHHHHHHHc-------CCCCCCEE
Confidence 34667788888887533211 2346788999999986 6668999999999999999865 21345788
Q ss_pred EEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEE
Q 013204 131 IARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIA 210 (447)
Q Consensus 131 i~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~ 210 (447)
|+...+|..........+..+.+. +..... ... +.+++++.+. +.+++|++
T Consensus 78 i~p~~t~~a~~~ai~~~g~~p~~~-------------d~~~~~----~~~--------d~~~~~~~i~----~~tk~i~~ 128 (384)
T d1b9ha_ 78 IVPAFTFISSSQAAQRLGAVTVPV-------------DVDAAT----YNL--------DPEAVAAAVT----PRTKVIMP 128 (384)
T ss_dssp EEESSSCTHHHHHHHHTTCEEEEE-------------CBCTTT----CCB--------CHHHHHHHCC----TTEEEECC
T ss_pred EEeccccccccccccccccccccc-------------cccccc----ccc--------chhhhccccc----cccccccc
Confidence 888877766655555444333221 110000 000 0255665543 46777777
Q ss_pred ccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeee----cccCCCcccceeEEE
Q 013204 211 EPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF----AKALSSAYMPIGAIL 286 (447)
Q Consensus 211 epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~----sK~l~gg~~~~g~~~ 286 (447)
....+. ... ++++.++|++|++++|-|.+|+ +|-.- .-...|-.-|+.++ +|.++.| ..|+++
T Consensus 129 ~~~~g~---~~d----~~~i~~~~~~~~i~lieD~a~a-~ga~~---~g~~~g~~g~~~~~Sf~~~K~i~~g--~GG~i~ 195 (384)
T d1b9ha_ 129 VHMAGL---MAD----MDALAKISADTGVPLLQDAAHA-HGARW---QGKRVGELDSIATFSFQNGKLMTAG--EGGAVV 195 (384)
T ss_dssp BCGGGC---CCC----HHHHHHHHHHHTCCBCEECTTC-TTCEE---TTEEGGGSSSCEEEECCTTSSSCSS--SCEEEE
T ss_pred cccccc---ccc----cccchhhhhhhhhhhhhhhcee-ccccc---CCEecCcccccceeccccccccccc--ccchhh
Confidence 666553 222 8999999999999999999997 43221 11112223465554 4877654 235555
Q ss_pred e-ChhHHHHhhhccCC-------CC---ccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCC
Q 013204 287 V-SPEVSEVIHSQSNT-------LG---SFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSP 355 (447)
Q Consensus 287 ~-~~~~~~~~~~~~~~-------~~---~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~ 355 (447)
. ++++.+.++..... .. ....+..+-.+.+.++.+++.|+.+ ++..+..+++.+++.+.|+++...-
T Consensus 196 t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~qL~~l--d~~~~~R~~~~~~y~~~L~~~~~i~ 273 (384)
T d1b9ha_ 196 FPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARL--DEQIAVRDERWTLLSRLLGAIDGVV 273 (384)
T ss_dssp ECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHTSTTCE
T ss_pred hhhHHHHHHHHHHHhcCCCCccccccccccccccccccccchhhhhhhhhhhc--ccchhhhhhhhhhhhhhhhcccccc
Confidence 5 45665554321100 00 0112334445677766666666543 3455666777777888877653210
Q ss_pred -ceee---EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-------------------------
Q 013204 356 -IIGE---IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG------------------------- 406 (447)
Q Consensus 356 -~~~~---~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g------------------------- 406 (447)
.... ......+..+.+.... ......+.+.|.++||-++..-
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~Rd~l~~~L~~~GI~~~~~y~plh~~~~~~~~~~~~~~~~~~~~~ 344 (384)
T d1b9ha_ 274 PQGGDVRADRNSHYMAMFRIPGLT---------EERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARR 344 (384)
T ss_dssp ECCCCTTCCBCCCSEEEEECTTCC---------HHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHT
T ss_pred cccccccccccccccccceecccc---------cccHHHHHHHHHHCCCCeeeeCcchhcCHHHHhcCCCcccccccccC
Confidence 0000 0111112222222111 0013458899999999876310
Q ss_pred ---------CEEEEecCCCCC-HHHHHHHHHHHHHHHHH
Q 013204 407 ---------DNIMMSPPFIMS-PEEVDELISKYGKALKA 435 (447)
Q Consensus 407 ---------~~iR~~~~~~~t-~e~i~~~~~~l~~~l~~ 435 (447)
..+.+-.+...| ++||+..++.|++++.+
T Consensus 345 ~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~~i~~~l~~ 383 (384)
T d1b9ha_ 345 CPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR 383 (384)
T ss_dssp CHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCEEEccCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 235555555566 67999999999998864
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.37 E-value=7e-10 Score=104.71 Aligned_cols=323 Identities=14% Similarity=0.138 Sum_probs=178.1
Q ss_pred HHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEc
Q 013204 55 VAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 134 (447)
Q Consensus 55 ~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~ 134 (447)
++++.+.++...... .-+...++++.+++.+ +.+.+++++|||.|+..|++.+ +-+++++||+..
T Consensus 4 ~~~~~~~l~~~~~~~-----~G~~~~~fE~~~~~~~---~~~~~~~~~SgT~Al~lal~~l-------~~~~gdeVi~p~ 68 (374)
T d1o69a_ 4 LKYIEEVFKSNYIAP-----LGEFVNRFEQSVKDYS---KSENALALNSATAALHLALRVA-------GVKQDDIVLASS 68 (374)
T ss_dssp HHHHHHHHHHTTTSC-----TTHHHHHHHHHHHHHH---CCSEEEEESCHHHHHHHHHHHT-------TCCTTCEEEEES
T ss_pred HHHHHHHHhcCCcCC-----CCHHHHHHHHHHHHHH---CcCeEEEeCCHHHHHHHHHHHc-------CCCCcCEEEeCC
Confidence 467777777643210 1245778999999997 5568999999999999999876 223457888877
Q ss_pred CCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEcccc
Q 013204 135 KSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVI 214 (447)
Q Consensus 135 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~ 214 (447)
-+|.............+. .+|..+... .. ..+.++......+ .+.+|++-...
T Consensus 69 ~t~~a~~~~~~~~g~~pv-------------~~Di~~~~~-----~~--------~~~~~~~~~~~~~-~~~aii~~~~~ 121 (374)
T d1o69a_ 69 FTFIASVAPICYLKAKPV-------------FIDCDETYN-----ID--------VDLLKLAIKECEK-KPKALILTHLY 121 (374)
T ss_dssp SSCGGGTHHHHHTTCEEE-------------EECBCTTSS-----BC--------HHHHHHHHHHCSS-CCCEEEEECGG
T ss_pred cchHhhHHHHhhccceeE-------------ecccccccc-----cc--------cccccccchhccc-ccccccccccc
Confidence 777665444444333332 222211000 00 0222222222223 34455554444
Q ss_pred CCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec----ccCCCcccceeEEEe-Ch
Q 013204 215 GAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA----KALSSAYMPIGAILV-SP 289 (447)
Q Consensus 215 ~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s----K~l~gg~~~~g~~~~-~~ 289 (447)
|. .+. ++++.++|+++|++||-|-+|+ +|-. +.-...|-..|+.+|| |.++.|. + |+++. ++
T Consensus 122 G~---~~d----~~~i~~~~~~~~i~vIED~a~a-~g~~---~~~~~~G~~gd~~~fSf~~~K~l~tge-G-G~i~tnn~ 188 (374)
T d1o69a_ 122 GN---AAK----MDEIVEICKENDIVLIEDAAEA-LGSF---YKNKALGTFGEFGVYSYNGNKIITTSG-G-GMLIGKNK 188 (374)
T ss_dssp GC---CCC----HHHHHHHHHHTTCEEEEECTTC-TTCE---ETTEETTSSSSEEEEECCTTSSSCCSS-C-EEEEESCH
T ss_pred cc---hhh----hHHHHHHhhccCcchhhhhhhh-hcce---ECCeecCCCCceEEEeccCcccccccc-c-eeehhhhH
Confidence 32 333 9999999999999999999998 4322 1112223345887765 8776542 2 44554 67
Q ss_pred hHHHHhhhccCCCC-------ccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhcc-CCCceeeEe
Q 013204 290 EVSEVIHSQSNTLG-------SFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFS-DSPIIGEIR 361 (447)
Q Consensus 290 ~~~~~~~~~~~~~~-------~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~~~~~~ 361 (447)
++++.+........ ....+..+-.+.+.++.+++-|+.+ ++..++.+++.+++.+.|.+.. ..+......
T Consensus 189 ~~~~~~~~~~~~g~~~~~~~~~~~~G~N~rm~ei~Aaig~~qL~~l--~~~i~~r~~i~~~y~~~L~~~~~~~~~~~~~~ 266 (374)
T d1o69a_ 189 EKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVL--EQRVLKKREIYEWYKEFLGEYFSFLDELENSR 266 (374)
T ss_dssp HHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTTEECCCCCTTEE
T ss_pred HHHHhhccccccccccccccccccCCccccccchhhhhhHHHHhhh--hhhcchhHHHHHHHHhhccccccccccccCCC
Confidence 77766654321110 1112334456677777777666644 3445666667777777776641 111111111
Q ss_pred -eeeeEEEE-EeecCCCCCC--------CCCCCcchHHHHHHHHHHcCceEEee-------------------------C
Q 013204 362 -GTGLILGT-EFADNKSPNE--------PFPPEWGIGAYFGAQCEKHGMLVRVS-------------------------G 406 (447)
Q Consensus 362 -~~g~~~~i-~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~Gi~~~~~-------------------------g 406 (447)
..-....+ .......... ...........+.+.|.++||-+++. .
T Consensus 267 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~gI~~r~~y~pl~~~~~~~~~~~~~~pna~~~~~ 346 (374)
T d1o69a_ 267 SNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQ 346 (374)
T ss_dssp CCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHH
T ss_pred CChhheeeeeccccccccccccccccchhhccchhhHHHHHHHHHHCCCCEEEeCcchhhChhhhcCCCCCCHHHHHHHh
Confidence 11111111 1111000000 00001112456889999999876531 0
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 407 DNIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 407 ~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
..+.+-.+...|++||+..++.|.++++
T Consensus 347 ~~i~LP~~~~lt~~di~~I~~~I~~~lk 374 (374)
T d1o69a_ 347 KGICLPSGTAMSKDDVYEISKLILKSIK 374 (374)
T ss_dssp HEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred CEEECcCCCCCCHHHHHHHHHHHHHHHC
Confidence 2345544456799999999999998863
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.34 E-value=2.5e-10 Score=107.70 Aligned_cols=315 Identities=17% Similarity=0.137 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCC-cceE
Q 013204 52 PRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPN-KKKF 130 (447)
Q Consensus 52 p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~-~~~v 130 (447)
.+-.+++.+.++.+... .-+...++++++++.+ +.+.+++++|||.|+..|++.+. -.++ ++.|
T Consensus 12 ~~~~~~v~~~l~~~~~~------~G~~v~~fE~~~~~~~---g~k~ai~~~Sgt~Al~~al~al~------~~~~~~~eV 76 (371)
T d2fnua1 12 KEDKKAVLEVLNSKQLT------QGKRSLLFEEALCEFL---GVKHALVFNSATSALLTLYRNFS------EFSADRNEI 76 (371)
T ss_dssp HHHHHHHHHHHTSSCCS------SSHHHHHHHHHHHHHH---TCSEEEEESCHHHHHHHHHHHSS------CCCTTSCEE
T ss_pred HHHHHHHHHHHcCCCcc------CCHHHHHHHHHHHHHH---CcCeEEEEecHHHHHHHHHHHhc------ccCCCCCee
Confidence 45567888888664321 2356778999999997 56689999999999999999762 1122 3468
Q ss_pred EEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEE
Q 013204 131 IARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIA 210 (447)
Q Consensus 131 i~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~ 210 (447)
|+..-+|.......+..+..+.+. |...... .. .+++++.+ . ..+.+|++
T Consensus 77 i~p~~t~~a~~~ai~~~G~~pv~v-------------Di~~~~~-----~~--------~~~~~~~~---~-~~t~avi~ 126 (371)
T d2fnua1 77 ITTPISFVATANMLLESGYTPVFA-------------GIKNDGN-----ID--------ELALEKLI---N-ERTKAIVS 126 (371)
T ss_dssp EECSSSCTHHHHHHHHTTCEEEEC-------------CBCTTSS-----BC--------GGGSGGGC---C-TTEEEEEE
T ss_pred ecccccccccceeeeccCcccccc-------------ccccccc-----cc--------chhhhhhc---c-chhhcccc
Confidence 876656655544444433333221 1111000 00 02223222 2 45666666
Q ss_pred ccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec----ccCCCcccceeEEE
Q 013204 211 EPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA----KALSSAYMPIGAIL 286 (447)
Q Consensus 211 epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s----K~l~gg~~~~g~~~ 286 (447)
-...|. .+. ++++.++|+++|+++|-|.+|+ +|.. +.-...|-..|+.++| |.++.|. .|+++
T Consensus 127 vh~~G~---~~~----~~~i~~~~~~~~i~lIEDaaqa-~Ga~---~~~~~~G~~g~~~~~Sf~~~K~l~~g~--GG~i~ 193 (371)
T d2fnua1 127 VDYAGK---SVE----VESVQKLCKKHSLSFLSDSSHA-LGSE---YQNKKVGGFALASVFSFHAIKPITTAE--GGAVV 193 (371)
T ss_dssp ECGGGC---CCC----HHHHHHHHHHHTCEEEEECTTC-TTCE---ETTEETTSSSSEEEEECCTTSSSCCSS--CEEEE
T ss_pred cccccc---ccc----cccccccccccchhhccchhhc-cCce---eccccCCcccccccccccccccccccc--ceEEE
Confidence 655543 344 8999999999999999999998 4321 1122234445666654 7776642 35555
Q ss_pred e-ChhHHHHhhhccCCCC---------ccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCc
Q 013204 287 V-SPEVSEVIHSQSNTLG---------SFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPI 356 (447)
Q Consensus 287 ~-~~~~~~~~~~~~~~~~---------~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~ 356 (447)
. ++++.+.+........ ....+..+-.+.+.++.++.-|+.+ ++..++.+++..++.+.|.++.....
T Consensus 194 t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~~l--~~~~~~R~~~~~~y~~~l~~~~~~~~ 271 (371)
T d2fnua1 194 TNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKA--PFLMQKREEAALTYDRIFKDNPYFTP 271 (371)
T ss_dssp ESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTCSSEEE
T ss_pred eechhhhhhcccccccccccccccccccccccccccccchhhhhhhhhhhhc--cchhhhhhhhhhhhcccccccccccc
Confidence 5 4567776654321110 0112344556677777676666544 34455666666777777765421100
Q ss_pred ee---eEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee----------------C----------C
Q 013204 357 IG---EIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS----------------G----------D 407 (447)
Q Consensus 357 ~~---~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----------------g----------~ 407 (447)
+. ........+.+.+..... .....+.+.|.++||-+++. + .
T Consensus 272 ~~~~~~~~~~~~~~~i~~~~~~~---------~~r~~~~~~L~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~ 342 (371)
T d2fnua1 272 LHPLLKDKSSNHLYPILMHQKFF---------TCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHA 342 (371)
T ss_dssp SGGGCSSCCCCSCEEEEECGGGG---------GGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHH
T ss_pred cccccccccccccccccccccch---------hHHHHHHHHHHHCCCCcceeCcccccCHHHHhccccCCCHHHHHHHhC
Confidence 00 001111112233332110 01346888999999876521 1 3
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 408 NIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 408 ~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
.+.+-.+...|++|++..++.+.+.+++
T Consensus 343 ~l~LP~~~~lt~~di~~I~~~i~~~~~~ 370 (371)
T d2fnua1 343 EISLPCHANLNLESVQNIAHSVLKTFES 370 (371)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred eEECcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 4566545567999999999999998876
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=3.3e-10 Score=105.20 Aligned_cols=332 Identities=17% Similarity=0.127 Sum_probs=183.0
Q ss_pred CCHHHHHHHHHHHhc-CCcccc---cCcCC--ChHHHHHH-HHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhc
Q 013204 50 SEPRLVAAATAQLNT-LPFYHS---FWNRT--TKPSLDLA-KELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNAL 122 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~-~~~~~~---~~~~~--~~~~~~l~-~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~ 122 (447)
..|.+++++...+.+ +.-+++ +.++. .+....++ ++.+++|. .....|. ..||+.||.+++..+.
T Consensus 38 ~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~-a~~anVq-p~SGs~AN~av~~All------ 109 (416)
T d1dfoa_ 38 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFG-ADYANVQ-PHSGSQANFAVYTALL------ 109 (416)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT-CSEEECC-CSSHHHHHHHHHHHHC------
T ss_pred CCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhC-CCcceee-cccCccHHHHHHHHhc------
Confidence 468888887766643 222111 11221 23333444 33344542 2222222 3599999999998764
Q ss_pred CCCCcceEEEEcCCCccchhhh--hcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhh
Q 013204 123 GRPNKKKFIARQKSYHGSTLIA--ASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE 200 (447)
Q Consensus 123 ~~~~~~~vi~~~~~yhg~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~ 200 (447)
++.++|+.++...=|+.... ...++. . ...++++. +. .. ..+.++++++....
T Consensus 110 --~pGD~Il~l~l~~GGHlshg~~~~~~g~-~-----------~~~~~y~~----d~-~~------~IDyd~l~~~a~~~ 164 (416)
T d1dfoa_ 110 --EPGDTVLGMNLAHGGHLTHGSPVNFSGK-L-----------YNIVPYGI----DA-TG------HIDYADLEKQAKEH 164 (416)
T ss_dssp --CTTCEEEEECTTTTCCGGGTCTTSHHHH-H-----------SEEEEECB----CS-SS------SBCHHHHHHHHHHH
T ss_pred --CCCCeeeeccccccccccccccccccCc-e-----------EEEEeccc----CC-cc------CccHHHHHHHHHHh
Confidence 45688999876544432111 111110 0 01111110 00 00 01247888888776
Q ss_pred CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-CCCccccccccccCCCCCCeeeec--ccCCC
Q 013204 201 GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-AFGRLGTMFGCDKYSIKPDLVSFA--KALSS 277 (447)
Q Consensus 201 ~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-g~g~~g~~~~~~~~~~~~d~v~~s--K~l~g 277 (447)
+| ++|++... ...-..+ +++++++|++.|++|++|..|. |+- .|..+ -+-+. ..|+++.+ |.|.|
T Consensus 165 kP---klIi~G~S--~y~r~~d----~~~~reiad~vga~l~~D~aH~~GLI-a~g~~-~sP~~-~aDvvt~tThKtlrG 232 (416)
T d1dfoa_ 165 KP---KMIIGGFS--AYSGVVD----WAKMREIADSIGAYLFVDMAHVAGLV-AAGVY-PNPVP-HAHVVTTTTHKTLAG 232 (416)
T ss_dssp CC---SEEEEECS--SCCSCCC----HHHHHHHHHHTTCEEEEECTTTHHHH-HHTSS-CCCTT-TSSEEEEESSSTTCC
T ss_pred cc---ceEEeccc--ccccccC----HHHHHHHHHhcCceEEcchhhhhcce-ecccc-CCccc-ccceeeeehhhcccC
Confidence 65 35665532 2222233 8999999999999999999986 431 11111 11122 25888754 99998
Q ss_pred cccceeEEEeC---hhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHhHhhc
Q 013204 278 AYMPIGAILVS---PEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQDGVKAF 351 (447)
Q Consensus 278 g~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l 351 (447)
.+-|.++.+ +++.+.+... ...+..-++..-.+++...+++...+ .+...++.++.+.|.+.|.+.
T Consensus 233 --PrggiI~~~~~~~~~~~~i~~a------vfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~ 304 (416)
T d1dfoa_ 233 --PRGGLILAKGGSEELYKKLNSA------VFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLER 304 (416)
T ss_dssp --CSCEEEEESSCCHHHHHHHHHH------HTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --CCceEEEeccchHhHHHHHHhh------hCcccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 477888875 4666666532 11111112222333333344554333 345677778888888888775
Q ss_pred cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEe----e-------CCEEEEecC----CC
Q 013204 352 SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV----S-------GDNIMMSPP----FI 416 (447)
Q Consensus 352 ~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~----~-------g~~iR~~~~----~~ 416 (447)
++.++..- ....++.+++..... .+....+.|.+.||.+-- + .++||+..| ..
T Consensus 305 -G~~iv~gg-TdnHlvlvdl~~~~~----------~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG 372 (416)
T d1dfoa_ 305 -GYKVVSGG-TDNHLFLVDLVDKNL----------TGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRG 372 (416)
T ss_dssp -TCEEGGGS-CSSSEEEEECGGGTC----------CHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTT
T ss_pred -CcccccCC-CCCceeEEEecccCC----------CHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCC
Confidence 33333211 122355677654321 144566777788998752 1 157999977 34
Q ss_pred CCHHHHHHHHHHHHHHHH---------HHHHHHHHhhhc
Q 013204 417 MSPEEVDELISKYGKALK---------ATEERVKELKSQ 446 (447)
Q Consensus 417 ~t~e~i~~~~~~l~~~l~---------~~~~~~~~~~~~ 446 (447)
..++|++++.+.|.++++ +++++...++++
T Consensus 373 ~~e~d~~~iA~~I~~~l~~~~~~~~~~~ir~~V~~l~~~ 411 (416)
T d1dfoa_ 373 FKEAEAKELAGWMCDVLDSINDEAVIERIKGKVLDICAR 411 (416)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Confidence 688999999998888874 366666665543
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.30 E-value=9.2e-10 Score=103.01 Aligned_cols=216 Identities=15% Similarity=0.157 Sum_probs=132.6
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 154 (447)
.++-...|+++++++- +.+.++.++||..|+..++.... +.+++||+.+..|.+........-
T Consensus 65 ~nPt~~~LE~~la~LE---gg~~a~~~sSGMaAi~~~l~~l~--------~~Gd~iv~~~~~Yg~t~~l~~~~~------ 127 (398)
T d1qgna_ 65 GNPTTVVLEEKISALE---GAESTLLMASGMCASTVMLLALV--------PAGGHIVTTTDCYRKTRIFIETIL------ 127 (398)
T ss_dssp CCHHHHHHHHHHHHHH---TCSEEEEESCHHHHHHHHHHHHS--------CSSCEEEEETTSCHHHHHHHHHTG------
T ss_pred CChHHHHHHHHHHHHh---CCceEEEecCcchHHHHHHhhcc--------cccccccccccccchhhhhhcccc------
Confidence 4566778999999884 44578999999999999988653 456889999999977643322111
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
+.++.. ...++..+ .++.++.+. .+++++|.+|..-+....++. +++|+++|
T Consensus 128 ~~~gi~---~~~~~~~~------------------~~~~~~~~~---~~~t~~v~~EspsNP~l~v~D----i~~ia~ia 179 (398)
T d1qgna_ 128 PKMGIT---ATVIDPAD------------------VGALELALN---QKKVNLFFTESPTNPFLRCVD----IELVSKLC 179 (398)
T ss_dssp GGGTCE---EEEECSSC------------------HHHHHHHHH---HSCEEEEEEESSCTTTCCCCC----HHHHHHHH
T ss_pred cccccc---cccccccc------------------hhhhhhhhc---cccceEEEccCccccccccch----HHHHHHHH
Confidence 111110 11111110 122333222 156889999998777765655 99999999
Q ss_pred HhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCC-cccceeEEEeChhHHHHhhhccCCCCccCcCCCC
Q 013204 235 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSS-AYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTY 311 (447)
Q Consensus 235 ~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~g-g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 311 (447)
+++|+++|+|.+... +..+.-+..-.|+++ .+|-++| +-.-.|++..++++++.++.. ....-.
T Consensus 180 ~~~g~~~vVDnT~at------P~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~-------~~~~G~ 246 (398)
T d1qgna_ 180 HEKGALVCIDGTFAT------PLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNL-------HHILGG 246 (398)
T ss_dssp HHTTCEEEEECTTTC------TTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHH-------HHHHCC
T ss_pred hhcCCEEEecceeec------cccCCchhhCCCEEEEechhhcCcccceeehhhcchhhhhhhhhhh-------cccCCC
Confidence 999999999988642 223344444578886 5687776 223446777888877766532 111122
Q ss_pred CCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhh
Q 013204 312 SGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA 350 (447)
Q Consensus 312 ~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~ 350 (447)
..+|..+...+..|+-+. -..++..++...+.+.|++
T Consensus 247 ~l~p~~a~ll~rgl~TL~--lRm~~~~~nA~~lA~~L~~ 283 (398)
T d1qgna_ 247 ALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAEILEA 283 (398)
T ss_dssp CCCHHHHHHHHHHGGGHH--HHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHhcchHHH--HHHHHHHHHHHHHHHHHHh
Confidence 346666665555544221 1234555556666666654
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.28 E-value=1.5e-10 Score=108.19 Aligned_cols=217 Identities=13% Similarity=0.104 Sum_probs=135.6
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 154 (447)
.++-...|++.++++- +-+.++.++||..|+..++..+. +.+++||+.+..|+|........-
T Consensus 57 ~nPT~~~LE~~la~LE---g~~~a~~~~SGmaAi~~~l~~l~--------~~Gd~vl~~~~~Yg~t~~l~~~~~------ 119 (392)
T d1gc0a_ 57 SNPTLNLLEARMASLE---GGEAGLALASGMGAITSTLWTLL--------RPGDEVLLGNTLYGCTFAFLHHGI------ 119 (392)
T ss_dssp CCHHHHHHHHHHHHHH---TCSEEEEESSHHHHHHHHHHHHC--------CTTCEEEEESSCCSHHHHHHHHTG------
T ss_pred CChHHHHHHHHHHHHh---CCcceeehhhHHHHHHHHHHhhc--------cCCCeeecccccchhhhhhhhhhh------
Confidence 4566778999999884 45578899999999999988663 345899999999998753322111
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
+.+++. +..++..+ .+++++.+. +++++|.+|...+....++. ++.|+++|
T Consensus 120 ~~~Gi~---~~~~d~~d------------------~~~~~~ai~----~~t~lv~~Esp~NP~l~v~D----i~~i~~ia 170 (392)
T d1gc0a_ 120 GEFGVK---LRHVDMAD------------------LQALEAAMT----PATRVIYFESPANPNMHMAD----IAGVAKIA 170 (392)
T ss_dssp GGGTCE---EEEECTTC------------------HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHH
T ss_pred ccCCcc---cccCCccC------------------HHHHHHhCC----CCCeEEEecccccceeeecc----hHHHHHHH
Confidence 111111 11222211 266666654 46789999998777766766 99999999
Q ss_pred HhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCC-cccceeEEEeChhHHHHhhhccCCCCccCcCCCC
Q 013204 235 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSS-AYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTY 311 (447)
Q Consensus 235 ~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~g-g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 311 (447)
+++|+++++|.+++. +..+.-+..-.|+++ .+|-++| +-.-.|+++++++.+...+.. ......-.
T Consensus 171 ~~~g~~~vvDnT~at------P~~~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~-----~~~~~~G~ 239 (392)
T d1gc0a_ 171 RKHGATVVVDNTYCT------PYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQ-----GLKDMTGA 239 (392)
T ss_dssp GGGTCEEEEECTTTH------HHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHT-----HHHHHTCC
T ss_pred HhcCCEEEEecCccC------ccccChHHhCCCEEEEecceeecCCcccccccccchhHHHHHHHHH-----HHHHccCC
Confidence 999999999988641 222333334478876 5698876 324456777888776554211 11111122
Q ss_pred CCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhh
Q 013204 312 SGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA 350 (447)
Q Consensus 312 ~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~ 350 (447)
..+|..+...+..++-+. -..++..++...+.+.|++
T Consensus 240 ~~~p~da~ll~rgl~TL~--lRm~~~~~nA~~lA~~L~~ 276 (392)
T d1gc0a_ 240 VLSPHDAALLMRGIKTLN--LRMDRHCANAQVLAEFLAR 276 (392)
T ss_dssp CCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHT
T ss_pred cCChhhHHHHHhccccHH--HHHHHHHHHHHHHHHHHHh
Confidence 345666665555554322 2234555566666666654
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.25 E-value=1.2e-09 Score=100.79 Aligned_cols=330 Identities=14% Similarity=0.095 Sum_probs=183.2
Q ss_pred CCHHHHHHHHHHHhc-CCcccc--cCcCCChHHHH---HH-HHHHHhcCcCCCCeEEE-eCChhhHHHHHHHHHHHHHHh
Q 013204 50 SEPRLVAAATAQLNT-LPFYHS--FWNRTTKPSLD---LA-KELLEMFTASKMAKVFF-TNSGSEANDTQVKLVWYYNNA 121 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~-~~~~~~--~~~~~~~~~~~---l~-~~l~~~~~~~~~~~v~~-~~sGseA~~~Al~~~~~~~~~ 121 (447)
..|.+++++...+.+ +.-+++ ...+-.+...+ ++ ++.+++|. .+.+-+ ..||+.||.++...+.
T Consensus 35 ~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~---a~~anVqp~SGs~An~av~~all----- 106 (405)
T d1kl1a_ 35 VSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFG---AEHANVQPHSGAQANMAVYFTVL----- 106 (405)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHC---CSEEECCCSSHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhC---CCcceeeccCchHHHHHHHHHhc-----
Confidence 468888887776643 222111 01112233333 33 34445552 222222 3489999999888764
Q ss_pred cCCCCcceEEEEcCCCccchhhh--hcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHh
Q 013204 122 LGRPNKKKFIARQKSYHGSTLIA--ASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILK 199 (447)
Q Consensus 122 ~~~~~~~~vi~~~~~yhg~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~ 199 (447)
.++++|+.++...=|+..-. ...++. . ...+.++- +.... ..+.+.++++...
T Consensus 107 ---~pGD~im~l~l~~GGHlshg~~~~~~g~-~-----------~~~~~y~~----d~~~~------~ID~d~l~~~a~~ 161 (405)
T d1kl1a_ 107 ---EHGDTVLGMNLSHGGHLTHGSPVNFSGV-Q-----------YNFVAYGV----DPETH------VIDYDDVREKARL 161 (405)
T ss_dssp ---CTTCEEEEECGGGTCCGGGTCTTSHHHH-H-----------SEEEEECB----CTTTC------SBCHHHHHHHHHH
T ss_pred ---CCCCEEEEeecccccccccCccccccce-E-----------EEEEEecc----chhcc------cccHHHHHHHHHh
Confidence 45689999875543332100 000000 0 01111110 00001 1114788888877
Q ss_pred hCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-CCCccccccccccCCCCCCeeeec--ccCC
Q 013204 200 EGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-AFGRLGTMFGCDKYSIKPDLVSFA--KALS 276 (447)
Q Consensus 200 ~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-g~g~~g~~~~~~~~~~~~d~v~~s--K~l~ 276 (447)
..| ++||+-...-. .+. -+++++++|++.|++|++|-.|. |+- .|..+ .+-+. ..|+++.+ |.|.
T Consensus 162 ~kP---klIi~G~S~y~---r~~---d~~~~reIad~vga~l~~D~aH~~GLI-a~g~~-~~P~~-~aDvvt~tThKtlr 229 (405)
T d1kl1a_ 162 HRP---KLIVAAASAYP---RII---DFAKFREIADEVGAYLMVDMAHIAGLV-AAGLH-PNPVP-YAHFVTTTTHKTLR 229 (405)
T ss_dssp HCC---SEEEECCSSCC---SCC---CHHHHHHHHHHHTCEEEEECTTTHHHH-HTTSS-CCSTT-TCSEEEEESSSTTC
T ss_pred hCc---ceEEecccccc---ccc---ChHHHHHHHhhhCCEEecchhhHhhhh-hhhhc-CChhh-hhhheecccccccc
Confidence 655 46666554221 122 28999999999999999998875 431 11111 11121 26999876 8998
Q ss_pred CcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHhHhhccC
Q 013204 277 SAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQDGVKAFSD 353 (447)
Q Consensus 277 gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~ 353 (447)
| .+-|.++.++++.+.+... ...+..-++..-.+++-..+++...+ .+..+++.++.+.|.+.|.+. +
T Consensus 230 G--Prgg~I~~~~~~~~~i~~a------vfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~-G 300 (405)
T d1kl1a_ 230 G--PRGGMILCQEQFAKQIDKA------IFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE-G 300 (405)
T ss_dssp C--CSCEEEEECHHHHHHHHHH------HTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred C--CCCceEEecchhHHHHHhh------hCcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 8 5888999999988887652 11111112222233333333444333 345677777888888888775 3
Q ss_pred CCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEe----e-------CCEEEEecC----CCCC
Q 013204 354 SPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV----S-------GDNIMMSPP----FIMS 418 (447)
Q Consensus 354 ~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~----~-------g~~iR~~~~----~~~t 418 (447)
+.++..-+ ...++.+++...... .....+.|.+.||++-- + .++|||..| ....
T Consensus 301 ~~vv~ggT-d~H~vlvdl~~~~~~----------g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~ 369 (405)
T d1kl1a_ 301 FTLVSGGT-DNHLLLVDLRPQQLT----------GKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFG 369 (405)
T ss_dssp CEEGGGSC-SSSEEEEECGGGTCC----------HHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCC
T ss_pred ceeecCCC-ccceeeccccccCCc----------HHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCC
Confidence 33332111 233556666543211 34455667788998762 1 157999977 4468
Q ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHhh
Q 013204 419 PEEVDELISKYGKALK---------ATEERVKELK 444 (447)
Q Consensus 419 ~e~i~~~~~~l~~~l~---------~~~~~~~~~~ 444 (447)
++|+.++.+.|.++++ +++++..++|
T Consensus 370 e~dm~~ia~~I~~~l~~~~~~~~~~~ir~~V~~L~ 404 (405)
T d1kl1a_ 370 LEEMDEIAAIIGLVLKNVGSEQALEEARQRVAALT 404 (405)
T ss_dssp HHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 9999999999988873 4556666554
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.23 E-value=1.1e-09 Score=102.30 Aligned_cols=217 Identities=13% Similarity=0.113 Sum_probs=132.4
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 154 (447)
.++-...|++.++++- +-+..+.++||..|+..++.... +.+++||+.++.|.+........ .
T Consensus 61 ~nPT~~~LE~~la~LE---gg~~a~~~sSGmaAi~~~l~~ll--------~~Gd~vi~~~~~Yg~t~~~~~~~------l 123 (397)
T d1y4ia1 61 GNPTTDALEKKLAVLE---RGEAGLATASGISAITTTLLTLC--------QQGDHIVSASAIYGCTHAFLSHS------M 123 (397)
T ss_dssp SCHHHHHHHHHHHHHH---TCSEEEEESSHHHHHHHHHHHHC--------CTTCEEEEESSSCHHHHHHHHTH------H
T ss_pred CCHHHHHHHHHHHHHh---CCccceeehHHHHHHHHHHhhcc--------CCCCeeeeecccccccchhhhcc------c
Confidence 4567778999999884 44578889999999999887653 44588999999997764322110 0
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
+.+++. +..++..+ .+.+++.+. +++++|.+|..-+....+.. ++.|+++|
T Consensus 124 ~~~Gi~---~~~vd~~d------------------~~~~~~~i~----~~Tklv~~Esp~NP~l~v~D----i~~i~~iA 174 (397)
T d1y4ia1 124 PKFGIN---VRFVDAGK------------------PEEIRAAMR----PETKVVYIETPANPTLSLVD----IETVAGIA 174 (397)
T ss_dssp HHTTCE---EEEECTTS------------------HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHH
T ss_pred CCCceE---eeccCCCC------------------HHHHHHhcC----CCCcEEEecCCcccceeecc----cHHHHHHh
Confidence 011111 11222111 255666553 47889999998766655655 99999999
Q ss_pred HhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCC-cccceeEEEeChhHHHHhhhccCCCCccCcCCCC
Q 013204 235 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSS-AYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTY 311 (447)
Q Consensus 235 ~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~g-g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 311 (447)
+++|+++++|.+... +..++-...-.|+++ ..|-++| +-.-.|+++++++.+...+.. .+....-.
T Consensus 175 ~~~gi~~vvDnT~at------P~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~-----~~~~~~G~ 243 (397)
T d1y4ia1 175 HQQGALLVVDNTFMS------PYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFV-----GLKDITGG 243 (397)
T ss_dssp HHTTCEEEEECTTTC------TTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHT-----HHHHTTCC
T ss_pred hcCCceEEecCcccC------cccCcchhcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHH-----HHHhCcCC
Confidence 999999999987542 223333334468876 4587776 223445677888766543210 11111122
Q ss_pred CCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhh
Q 013204 312 SGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA 350 (447)
Q Consensus 312 ~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~ 350 (447)
..+|..+..++..|+-+. -..++..++...+.+.|++
T Consensus 244 ~l~p~~a~l~~rgl~TL~--lRm~~~~~nA~~lA~~L~~ 280 (397)
T d1y4ia1 244 CMSPFNAWLTLRGVKTLG--IRMERHCENALKIARFLEG 280 (397)
T ss_dssp CCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHcCcCcHH--HHHHHHHHHHHHHHHHHHh
Confidence 346776665555554321 1234445556666666654
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.23 E-value=1.8e-10 Score=107.41 Aligned_cols=215 Identities=15% Similarity=0.166 Sum_probs=126.5
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 154 (447)
.++-...|+++++++- +-+.++.++||..|+.+.+.++ +..++||+..+.|-+........ .
T Consensus 47 ~nPt~~~le~~la~LE---~~~~a~~fsSGMaAisall~ll---------~~Gd~vv~~~~~Yg~t~~l~~~~------~ 108 (380)
T d1ibja_ 47 GNPTRDALESLLAKLD---KADRAFCFTSGMAALSAVTHLI---------KNGEEIVAGDDVYGGSDRLLSQV------V 108 (380)
T ss_dssp CCHHHHHHHHHHHHHH---TCSEEEEESSHHHHHHHHHTTS---------CTTCEEEEESSCCHHHHHHHHHT------S
T ss_pred CChHHHHHHHHHHHHc---CCceEEehhhHHHHHHHHHHhh---------CCCCEEEEEecccccccchhhhh------h
Confidence 4566778889998884 4457889999999986433222 34578888887775553222110 1
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
+.++.. ...++..+ .+++++.+. +++++|.+|...+....++. +++|+++|
T Consensus 109 ~~~gi~---~~~~d~~~------------------~~~~~~ai~----~~t~li~~EtpsNP~l~v~D----i~~i~~iA 159 (380)
T d1ibja_ 109 PRSGVV---VKRVNTTK------------------LDEVAAAIG----PQTKLVWLESPTNPRQQISD----IRKISEMA 159 (380)
T ss_dssp GGGTCE---EEEECTTS------------------HHHHHHHCC----SSEEEEEECSSCTTTCCCCC----HHHHHHHH
T ss_pred cccccc---ccccCcch------------------HHHHHHHhc----cCccEEEecccccccccccc----HHHHHHHH
Confidence 111111 11122111 255555553 57889999998777766666 99999999
Q ss_pred HhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCcc-cceeEEEeC-hhHHHHhhhccCCCCccCcCCC
Q 013204 235 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSAY-MPIGAILVS-PEVSEVIHSQSNTLGSFSHGFT 310 (447)
Q Consensus 235 ~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg~-~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~t 310 (447)
+++|+++|+|.+..+. ..+.-...-.|+++ .+|-++|.. .-.|+++.+ +++.+.+.... ...-
T Consensus 160 ~~~g~~~vVDnT~atP------~~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~-------~~~G 226 (380)
T d1ibja_ 160 HAQGALVLVDNSIMSP------VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQ-------NSEG 226 (380)
T ss_dssp HTTTCEEEEECTTTCT------TTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHH-------HHTT
T ss_pred HHcCCeEEeecccccc------ccccccccCCCEEEecccceeccccCccccccccchhhHHHHHHhhc-------cccC
Confidence 9999999999986522 22333334478876 558887722 233455555 55656554321 1112
Q ss_pred CCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc
Q 013204 311 YSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF 351 (447)
Q Consensus 311 ~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l 351 (447)
...+|..+......++-+. -..++..++...+.+.|++-
T Consensus 227 ~~l~p~~a~ll~rgl~Tl~--lRm~~~~~nA~~lA~~L~~h 265 (380)
T d1ibja_ 227 SGLAPFDCWLCLRGIKTMA--LRIEKQQENARKIAMYLSSH 265 (380)
T ss_dssp CBCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTC
T ss_pred CcCCHHHHHHHHhcchhhh--hhHHHHHHHHHHHHHHHHhC
Confidence 2345666665555554321 22455555666666666643
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.21 E-value=8.1e-11 Score=110.71 Aligned_cols=324 Identities=13% Similarity=0.057 Sum_probs=153.4
Q ss_pred CCHHHHHHHHHHHhcCCcc-cc--cCcCC----ChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhc
Q 013204 50 SEPRLVAAATAQLNTLPFY-HS--FWNRT----TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNAL 122 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~-~~--~~~~~----~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~ 122 (447)
-+++|+++|.+++.++... .+ .++.. .+...+..+.+++++.-.+...++|++|+++++..|+....
T Consensus 14 vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~l------ 87 (361)
T d2c0ra1 14 LPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNF------ 87 (361)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHH------
T ss_pred CCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcc------
Confidence 4689999999887553211 00 01111 23445666777777743333478888877666655544322
Q ss_pred CCCCcceEEEEcCCCccchhhh-hcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhC
Q 013204 123 GRPNKKKFIARQKSYHGSTLIA-ASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEG 201 (447)
Q Consensus 123 ~~~~~~~vi~~~~~yhg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~ 201 (447)
- ..+++++++.....+..... ....+........ +... ..+ .+++++.+.
T Consensus 88 ~-~~~~~~l~~~~g~~~~~~~~~~~~~g~~~~~~~~----------~~~~----~~~-----------~~~~~~~~~--- 138 (361)
T d2c0ra1 88 L-KEGQTANYVMTGSWASKALKEAKLIGDTHVAASS----------EASN----YMT-----------LPKLQEIQL--- 138 (361)
T ss_dssp C-CTTCEEEEEECSHHHHHHHHHHHHHSCEEEEEEC----------GGGT----TCS-----------CCCGGGCCC---
T ss_pred c-cCCCceEEEeechhhhhhhhhhhhcCceeeeecc----------cccc----ccc-----------hhhhhhhcc---
Confidence 1 23456666655444432222 1111211100000 0000 000 022222221
Q ss_pred CCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccc
Q 013204 202 PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMP 281 (447)
Q Consensus 202 ~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~ 281 (447)
...+ +.++.+ .|...+ ++++.++|++||+++++|.|++ +|.. +. +...+..|+.+.+|.++.+ .+
T Consensus 139 ~~~~--~~v~~~---tg~~~~----~~~i~~~~~~~~al~~vDavss-~g~~--~i--d~~~~di~~~s~~k~~~~~-~~ 203 (361)
T d2c0ra1 139 QDNA--AYLHLT---SNETIE----GAQFKAFPDTGSVPLIGDMSSD-ILSR--PF--DLNQFGLVYAGAQKNLGPS-GV 203 (361)
T ss_dssp CTTE--EEEEEE---SEETTT----TEECSSCCCCTTSCEEEECTTT-TTSS--CC--CGGGCSEEEEETTTTTCCS-SC
T ss_pred cCcc--eEEEEe---ccccee----cceEEEeeccCCceEEEEeecc-cccc--cc--ccccceeEEEecccccccc-cC
Confidence 2233 333322 233444 5567889999999999999997 4322 22 3333456777778887754 23
Q ss_pred eeEEEeChhHHHHhhhccCCC----CccCcCCCCCCcHHHHHHHHHHHHHHhhhc----HHHHHHHHHHHHHHhHhhccC
Q 013204 282 IGAILVSPEVSEVIHSQSNTL----GSFSHGFTYSGHPVSCAVAIEALKIYKERN----IVEQVNKIAPKFQDGVKAFSD 353 (447)
Q Consensus 282 ~g~~~~~~~~~~~~~~~~~~~----~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~----~~~~~~~~~~~l~~~L~~l~~ 353 (447)
+++++..+.+.+.-....... ............+.....+..+.......+ ...+.+.....+.........
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (361)
T d2c0ra1 204 TVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGG 283 (361)
T ss_dssp EEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred cEEEEEhHHhhhCccccccccccccccccccccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhccc
Confidence 344444443322111000000 000111122223333333333333322222 222222233333333322211
Q ss_pred C-Ccee--eEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC---CEEEEecCCCCCHHHHHHHHH
Q 013204 354 S-PIIG--EIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG---DNIMMSPPFIMSPEEVDELIS 427 (447)
Q Consensus 354 ~-~~~~--~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g---~~iR~~~~~~~t~e~i~~~~~ 427 (447)
. .... ..+.. ..+.+.+++.. ....+.+.|.++||.+..+. +.+|++....+|+|||+++++
T Consensus 284 ~~~~~~~~~~rS~-~~~~~~~~~~~-----------~~~~~~~~L~~~GI~~~~G~~~~g~~RIs~~~~~~~edv~~Lv~ 351 (361)
T d2c0ra1 284 FYRGCVDVDSRSD-MNITFRLASEE-----------LEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQ 351 (361)
T ss_dssp SSEESSCGGGBCS-SEEEEECSCHH-----------HHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHH
T ss_pred ccccCCChhhccc-eEEEEECCCcc-----------cHHHHHHHHHHCCCEEecCCCcCCeEEEEecCCCCHHHHHHHHH
Confidence 1 1111 11111 22334443211 24568899999999887652 349999999999999999999
Q ss_pred HHHHHHHH
Q 013204 428 KYGKALKA 435 (447)
Q Consensus 428 ~l~~~l~~ 435 (447)
.|++..++
T Consensus 352 ~l~~~~~~ 359 (361)
T d2c0ra1 352 FMEHFKRS 359 (361)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99986543
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.21 E-value=1.4e-10 Score=109.00 Aligned_cols=325 Identities=9% Similarity=-0.067 Sum_probs=156.6
Q ss_pred CCHHHHHHHHHHHhcCCccc-ccC--cCC----ChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhc
Q 013204 50 SEPRLVAAATAQLNTLPFYH-SFW--NRT----TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNAL 122 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~-~~~--~~~----~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~ 122 (447)
-|++|+++|.+++-++.... +.. +.. .+...+..+.+++++.-.+...++|++|+++++..+.....
T Consensus 14 ~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~~~~~~~------ 87 (360)
T d1w23a_ 14 LPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNL------ 87 (360)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHH------
T ss_pred CCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhhh------
Confidence 48999999999875532110 000 111 22445667778888743333367777777777766555442
Q ss_pred CCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCC
Q 013204 123 GRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGP 202 (447)
Q Consensus 123 ~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~ 202 (447)
. ++++.+++...+.++................ ...+. .. ... ++++++..
T Consensus 88 ~-~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-----------~~~~~-~~-~~~-----------~~~~~~~~----- 137 (360)
T d1w23a_ 88 L-TKGTIGNYVLTGSWSEKALKEAKLLGETHIA-----------ASTKA-NS-YQS-----------IPDFSEFQ----- 137 (360)
T ss_dssp C-CTTCEEEEEECSHHHHHHHHHHHTTSEEEEE-----------EECGG-GT-SCS-----------CCCGGGCC-----
T ss_pred c-ccCcccceeeccchhhhhHHHHHHhhhccee-----------ecccc-cc-ccc-----------hhhhhhcc-----
Confidence 1 3456777766665555333222111110000 00000 00 000 01111111
Q ss_pred CcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccce
Q 013204 203 ETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPI 282 (447)
Q Consensus 203 ~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~ 282 (447)
.....+.++.+. |.+.+ +++|.++|++||+++|+|-+++ +|-. ..-++. +..|+.+++|.++.+ .+.
T Consensus 138 ~~~~~~~~~~~t---g~~~~----~~~i~~~~~~~g~l~ivDavqs-~g~~--~id~~~--~~vd~~~~~~~k~~~-~~~ 204 (360)
T d1w23a_ 138 LNENDAYLHITS---NNTIY----GTQYQNFPEINHAPLIADMSSD-ILSR--PLKVNQ--FGMIYAGAQKNLGPS-GVT 204 (360)
T ss_dssp CCTTEEEEEEES---EETTT----TEECSSCCCCCSSCEEEECTTT-TTSS--CCCGGG--CSEEEEETTTTTSCT-TCE
T ss_pred cccccceeEecC---Ccccc----ceeeeeccccceeeEEeecccc-cccc--cccccc--ccceEEeeccccccC-Ccc
Confidence 122344555544 34555 6788999999999999999998 4322 322333 445888888877654 244
Q ss_pred eEEEeChhHHHHhhhccCCCC----ccCcCCCCCCcHHHHHHHHHHHHHHhhhcH----HHHHHHHHHHHHHhHhhccCC
Q 013204 283 GAILVSPEVSEVIHSQSNTLG----SFSHGFTYSGHPVSCAVAIEALKIYKERNI----VEQVNKIAPKFQDGVKAFSDS 354 (447)
Q Consensus 283 g~~~~~~~~~~~~~~~~~~~~----~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~----~~~~~~~~~~l~~~L~~l~~~ 354 (447)
++++.++...+.......... ................+....+........ ..+.+................
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (360)
T d1w23a_ 205 VVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGF 284 (360)
T ss_dssp EEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred eeeEechhhhcccccCCcchhhhhhhhhhhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhcccc
Confidence 555544433221110000000 000111122222222222222222222221 122222222222222221111
Q ss_pred C-ce--eeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC---CEEEEecCCCCCHHHHHHHHHH
Q 013204 355 P-II--GEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG---DNIMMSPPFIMSPEEVDELISK 428 (447)
Q Consensus 355 ~-~~--~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g---~~iR~~~~~~~t~e~i~~~~~~ 428 (447)
. .. ...+..+ .+.+.+.+.. ....+...|.++||....+. +.+|++....+|.|+++.+++.
T Consensus 285 ~~~~~~~~~rS~~-vvsf~i~~~~-----------~~~~~~~~l~~~GI~~~~G~~~~ggiRiS~~~~~t~e~V~~Li~~ 352 (360)
T d1w23a_ 285 YVGHAEKGSRSLM-NVTFNLRNEE-----------LNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALREL 352 (360)
T ss_dssp SEESSCGGGBCSS-EEEEECSSHH-----------HHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHH
T ss_pred cccCCChhhccee-EEEEEcCCCc-----------cHHHHHHHHHHCCCeeeeCCCccCcEEEEeeCCCCHHHHHHHHHH
Confidence 1 11 1112222 3344443311 34568888999999876542 3599997667799999999999
Q ss_pred HHHHHHH
Q 013204 429 YGKALKA 435 (447)
Q Consensus 429 l~~~l~~ 435 (447)
|++..+.
T Consensus 353 ~~~~~~~ 359 (360)
T d1w23a_ 353 MIQFKEN 359 (360)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9887754
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=99.19 E-value=8.7e-09 Score=98.73 Aligned_cols=333 Identities=13% Similarity=0.115 Sum_probs=186.3
Q ss_pred CCCHHHHHHHHHHHhcCC-ccc-ccCcCCChHHHHHHHHHHHhcCcCCCCeEEEe-CChhhHHHHHHHHHHHHHHhcCCC
Q 013204 49 GSEPRLVAAATAQLNTLP-FYH-SFWNRTTKPSLDLAKELLEMFTASKMAKVFFT-NSGSEANDTQVKLVWYYNNALGRP 125 (447)
Q Consensus 49 ~~~p~v~~a~~~~~~~~~-~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~-~sGseA~~~Al~~~~~~~~~~~~~ 125 (447)
|-+|.+.+.+.+....+- +.. ....+.-...-|+...++++. +++-+-.. ..|+.|...|+.+++.+++.+++.
T Consensus 76 hy~P~v~~~~~~~~TaYTPYQPaEiSQG~LQalfEfQtmi~eLT---GMdvaNaS~yDGatA~aeA~~ma~r~~~~~~~~ 152 (471)
T d1wyub1 76 KYNPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALT---GMDAITLEPAAGAHGELTGILIIRAYHEDRGEG 152 (471)
T ss_dssp CCCCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHH---TCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred ccCcchhhhHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHh---CCCccccccchHHHHHHHHHHHHHHHhhhcccc
Confidence 557888888765321110 000 011222334457778888886 66543322 378888888888888887777766
Q ss_pred CcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcE
Q 013204 126 NKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETI 205 (447)
Q Consensus 126 ~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~ 205 (447)
....++...+.+|..........+..... ++..... ..+ .+.++... .+.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~-----~~~--------~~~~~~~~----~~~~ 203 (471)
T d1wyub1 153 RTRRVVLVPDSAHGSNPATASMAGYQVRE------------IPSGPEG-----EVD--------LEALKREL----GPHV 203 (471)
T ss_dssp TTCCEEEEETTSCTHHHHHHHHTTCEEEE------------ECBCTTS-----SBC--------HHHHHHHC----STTE
T ss_pred cccccccCCcccccceeeeeecccceeec------------ccccccc-----ccc--------chhhhhhh----hccc
Confidence 55666777777776644433322221111 1100000 000 13333222 3578
Q ss_pred EEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc----CCCccccccccccCCCCCCeeeec--c----cC
Q 013204 206 AAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC----AFGRLGTMFGCDKYSIKPDLVSFA--K----AL 275 (447)
Q Consensus 206 a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~----g~g~~g~~~~~~~~~~~~d~v~~s--K----~l 275 (447)
+++++...+..|.... ..+++.+++++.|..+++|-+.- ++-..|. .-.|+++.+ + .+
T Consensus 204 a~v~v~~p~~~g~~e~----~~~~~~~~~h~~g~~~~~~~~~~~~~~~l~~p~~--------~g~div~vg~~q~~G~P~ 271 (471)
T d1wyub1 204 AALMLTNPNTLGLFER----RILEISRLCKEAGVQLYYDGANLNAIMGWARPGD--------MGFDVVHLNLHKTFTVPH 271 (471)
T ss_dssp EEEEECSSCTTSCCCT----THHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHH--------HTCSEEECCTTTTTCCCC
T ss_pred cceeeccCCCcccccc----hhhhhHHHHHhccccccccccchhhhhhccccCc--------cccccccccccccccccc
Confidence 8888888777765332 37889999999999888874422 1111110 113555432 3 34
Q ss_pred CCcccceeEEEeChhHHHHhhhc----c--------CCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhc---HHHHHHHH
Q 013204 276 SSAYMPIGAILVSPEVSEVIHSQ----S--------NTLGSFSHGFTYSGHPVSCAVAIEALKIYKERN---IVEQVNKI 340 (447)
Q Consensus 276 ~gg~~~~g~~~~~~~~~~~~~~~----~--------~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~---~~~~~~~~ 340 (447)
++|+..+|++..+++++..+-.. . .+...+......+.+.+.+.+|...+..+..++ +.+...++
T Consensus 272 ~~GGP~~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~ 351 (471)
T d1wyub1 272 GGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLN 351 (471)
T ss_dssp TTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccceeehhhhhccCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 55657789999999987765321 0 000111111122333443334444455555544 44667778
Q ss_pred HHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee------CCEEEEecC
Q 013204 341 APKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS------GDNIMMSPP 414 (447)
Q Consensus 341 ~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------g~~iR~~~~ 414 (447)
..++++.|++. ++.+... ...+..+-+..+... ....+.++|++.|++.... .+.+.+++.
T Consensus 352 A~Yla~~L~~~-G~~~~~~---~~ff~EFvv~~~~~~---------~~~~i~k~L~~~G~~~~~~~~p~~~~~~llv~vT 418 (471)
T d1wyub1 352 ARYLKELLKEK-GYRVPYD---GPSMHEFVAQPPEGF---------RALDLAKGLLELGFHPPTVYFPLIVKEALMVEPT 418 (471)
T ss_dssp HHHHHHHHHHT-TCBCSSC---SSCCSCEEEBCSTTC---------CHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCC
T ss_pred HHHHHHHHhhc-CceeccC---cceeeEEeecCCCCC---------CHHHHHHHHHHcCCCCCcccCcCCCCCeEEEecC
Confidence 88888888653 3222111 111111222211111 1445888999999975421 256899998
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 415 FIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 415 ~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
=.+|++|||+++++|++++++.++
T Consensus 419 E~~tkedID~lv~aL~~i~~e~~~ 442 (471)
T d1wyub1 419 ETEAKETLEAFAEAMGALLKKPKE 442 (471)
T ss_dssp TTSCHHHHHHHHHHHHHHHTSCHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhhHH
Confidence 899999999999999999988753
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=2.7e-09 Score=99.38 Aligned_cols=215 Identities=15% Similarity=0.147 Sum_probs=127.1
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 154 (447)
.++-...|+++++++- +-+.++.++||-.|+..++..+. ..++.|++.+..|.|........-
T Consensus 48 ~nPt~~~le~~la~LE---gg~~a~~~sSGMaAi~~~l~~l~--------~~gd~vv~~~~~yg~t~~~~~~~~------ 110 (384)
T d1cs1a_ 48 GNPTRDVVQRALAELE---GGAGAVLTNTGMSAIHLVTTVFL--------KPGDLLVAPHDCYGGSYRLFDSLA------ 110 (384)
T ss_dssp CCHHHHHHHHHHHHHH---TCSEEEEESSHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHHHHH------
T ss_pred CCHHHHHHHHHHHHHh---CCCceEEecChHHHHHHHHhhcc--------cccceecccccccchhhhhhhhhh------
Confidence 4566778889998884 44578999999999999987653 445788888888866532221110
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
+.++. ....++..+ .+++++.+. +++++|.+|..-+....++. +++|+++|
T Consensus 111 ~~~g~---~~~~~d~~d------------------~~~~~~~~~----~~t~~v~~EspsNP~l~v~D----i~~i~~ia 161 (384)
T d1cs1a_ 111 KRGCY---RVLFVDQGD------------------EQALRAALA----EKPKLVLVESPSNPLLRVVD----IAKICHLA 161 (384)
T ss_dssp TTTSC---EEEEECTTC------------------HHHHHHHHH----TCCSEEEEECSCTTTCCCCC----HHHHHHHH
T ss_pred ccccc---ccccccCCC------------------HHHHHhhcc----ccccEEEEeccccccceecc----HHHHhhhh
Confidence 00110 011111111 255666665 45678999998776655655 99999999
Q ss_pred HhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCc-ccceeEEEeC-hhHHHHhhhccCCCCccCcCCC
Q 013204 235 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSA-YMPIGAILVS-PEVSEVIHSQSNTLGSFSHGFT 310 (447)
Q Consensus 235 ~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg-~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~t 310 (447)
+++|+++|+|.+... +..+.-...-.|+++ .+|-++|. -.-.|+++.+ +++.+.+... ....-
T Consensus 162 ~~~g~~~vVDNT~at------P~~~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~-------~~~~G 228 (384)
T d1cs1a_ 162 REVGAVSVVDNTFLS------PALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWW-------ANNIG 228 (384)
T ss_dssp HHTTCEEEEECTTTC------TTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHH-------HHHHT
T ss_pred hhcCcEEEEeccccC------cccccccccCCCEEEEccccccccCCCcccccccCCchhhhhhhhhh-------hhhhh
Confidence 999999999998641 222333333478875 56988762 2334556664 4554544321 01112
Q ss_pred CCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhh
Q 013204 311 YSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA 350 (447)
Q Consensus 311 ~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~ 350 (447)
...+|..+...+..|+-+. -..++..++...+.+.|+.
T Consensus 229 ~~~~p~~a~ll~rgL~TL~--lRm~~~~~nA~~lA~~L~~ 266 (384)
T d1cs1a_ 229 VTGGAFDSYLLLRGLRTLV--PRMELAQRNAQAIVKYLQT 266 (384)
T ss_dssp CBCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTT
T ss_pred hccccccHHHHhhccchhH--HHHHHHHHHHHHHHHhccc
Confidence 2345666655555544221 1234455566666666654
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=4.3e-10 Score=105.31 Aligned_cols=325 Identities=11% Similarity=-0.035 Sum_probs=155.1
Q ss_pred CCHHHHHHHHHHHhcCCcccc-c--CcCCC----hHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhc
Q 013204 50 SEPRLVAAATAQLNTLPFYHS-F--WNRTT----KPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNAL 122 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~-~--~~~~~----~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~ 122 (447)
-+|+|++||.+++.++..... . .+..+ +...+..+.+++++...+...++|++|+++++..++....
T Consensus 12 ~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~~~~------ 85 (360)
T d1bjna_ 12 LPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNI------ 85 (360)
T ss_dssp CCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHH------
T ss_pred CCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhhhhcc------
Confidence 479999999998865321100 0 01112 3345667777777743344478888877777766654332
Q ss_pred CCCCcceEEEEcCCCccchhhhhcccCCc-cccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhC
Q 013204 123 GRPNKKKFIARQKSYHGSTLIAASLSGLP-ALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEG 201 (447)
Q Consensus 123 ~~~~~~~vi~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~ 201 (447)
..+++.+++....+.+.....+...... ........ ..... .+++++.+. .
T Consensus 86 -~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------------------------~~~~~~~~~--~ 137 (360)
T d1bjna_ 86 -LGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVT-VDGLR------------------------AVKPMREWQ--L 137 (360)
T ss_dssp -CTTCCEEEEEESSHHHHHHHHHHTTTSEEEEEECEEE-ETTEE------------------------EECCGGGCC--C
T ss_pred -cccccccceecccchhhhhHHHHhhcCccceeecccc-CCCcc------------------------hhhhhhhhc--c
Confidence 1345666666555544433322211111 10000000 00000 011111111 1
Q ss_pred CCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccc
Q 013204 202 PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMP 281 (447)
Q Consensus 202 ~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~ 281 (447)
.....+|.. ..+.+|...+.. .+ .++.+++++++|-+++ ++.. -++..++..++.+.+|.++++ .+
T Consensus 138 ~~~~v~v~~--~~~~t~~~~~~~----~i--~~~~~~~~v~vDa~~~-~~~~----~vd~~~~dv~~~ss~k~~~~~-~~ 203 (360)
T d1bjna_ 138 SDNAAYMHY--CPNETIDGIAID----ET--PDFGADVVVAADFSST-ILSR----PIDVSRYGVIYAGAQKNIGPA-GL 203 (360)
T ss_dssp CSSCSCEEE--CSEETTTTEECC----CC--CCCCTTCCEEEECTTT-TTSS----CCCGGGCSEEEEETTTTTSST-TC
T ss_pred CCceeEEEe--cccccccCcccc----ce--ecccccceeeeeeecc-ccce----eeeeccceeEEEEcccccccC-CC
Confidence 112222222 223344444432 22 4677899999998775 4221 234445555666778988876 46
Q ss_pred eeEEEeChhHHHHhhhccCCCC----ccCcCCCCCCcHHHHHHHHHHHHHHhhhc----HHHHHHHHHHHHHHhHhhccC
Q 013204 282 IGAILVSPEVSEVIHSQSNTLG----SFSHGFTYSGHPVSCAVAIEALKIYKERN----IVEQVNKIAPKFQDGVKAFSD 353 (447)
Q Consensus 282 ~g~~~~~~~~~~~~~~~~~~~~----~~~~~~t~~~~~~~~~aa~a~l~~~~~~~----~~~~~~~~~~~l~~~L~~l~~ 353 (447)
.++++..+...+.......... ...........+.....+........... ..++.++....+...+.....
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (360)
T d1bjna_ 204 TIVIVREDLLGKANIACPSILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDF 283 (360)
T ss_dssp EEEEEEGGGCSCCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred ceeEeeehhhhhccccCCcchhhHHHHhhhhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhcccc
Confidence 6666665543322111000000 00011122222333333332222222222 222333333333333333311
Q ss_pred CCc-e-eeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC---CEEEEecCCCCCHHHHHHHHHH
Q 013204 354 SPI-I-GEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG---DNIMMSPPFIMSPEEVDELISK 428 (447)
Q Consensus 354 ~~~-~-~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g---~~iR~~~~~~~t~e~i~~~~~~ 428 (447)
... . ...+. ...+.+.+++.. ....+...|.++||.+..+. +.+|++....+|+|||+++++.
T Consensus 284 ~~~~~~~~~rs-~~v~~f~~~~~~-----------~~~~~~~~l~~~Gi~~~~G~~~~g~~Ris~~~~~t~edV~~li~~ 351 (360)
T d1bjna_ 284 YRNDVAKRNRS-RMNVPFQLADSA-----------LDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDF 351 (360)
T ss_dssp EECCBCGGGBC-SSEEEEEESSGG-----------GHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHH
T ss_pred ccccCCccccc-ceEEEEEcCCcc-----------cHHHHHHHHHHCCCEeecCCCccCeEEEEecCCCCHHHHHHHHHH
Confidence 111 1 11112 233455554321 24568888999999887652 3499999888999999999999
Q ss_pred HHHHHH
Q 013204 429 YGKALK 434 (447)
Q Consensus 429 l~~~l~ 434 (447)
|++..+
T Consensus 352 l~e~~~ 357 (360)
T d1bjna_ 352 MVEFER 357 (360)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998654
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=8.3e-09 Score=96.46 Aligned_cols=215 Identities=12% Similarity=0.097 Sum_probs=126.1
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 154 (447)
.++-...|++.++++- +-+.++.++||..|+..++..+. +.+++||+....|-|........-
T Consensus 56 ~nPt~~~le~~la~LE---g~~~a~~~~SGMaAi~~~l~~l~--------~~Gd~iv~~~~~Yg~T~~l~~~~l------ 118 (391)
T d1cl1a_ 56 GTLTHFSLQQAMCELE---GGAGCVLFPCGAAAVANSILAFI--------EQGDHVLMTNTAYEPSQDFCSKIL------ 118 (391)
T ss_dssp CCHHHHHHHHHHHHHH---TCSEEEEESSHHHHHHHHHHHHC--------CTTCEEEEETTSCHHHHHHHHHTG------
T ss_pred CChhHHHHHHHHHHHh---CCccEEEeccccceeeehhhccc--------CCCCeEEEecccccchhhhhhhcc------
Confidence 4667788899999884 44679999999999999987653 345788888887765532211100
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
..+++. ...++..+ .+++++.+ .+++++|.+|...+....++. ++.++++|
T Consensus 119 ~~~Gi~---~~~~d~~d------------------~~~~~~~i----~~~t~~i~~EtpsNP~l~v~D----i~~i~~~a 169 (391)
T d1cl1a_ 119 SKLGVT---TSWFDPLI------------------GADIVKHL----QPNTKIVFLESPGSITMEVHD----VPAIVAAV 169 (391)
T ss_dssp GGGTCE---EEEECTTC------------------GGGGGGTC----CTTEEEEEEESSCTTTCCCCC----HHHHHHHH
T ss_pred cccccc---cccccCcc------------------cccccccc----ccccceeeecccCcccccccc----cHHHHHHH
Confidence 011111 11111100 13344333 246788999988766655555 89999999
Q ss_pred Hhc--CCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCC-cccceeEEEeChhHHHHhhhccCCCCccCcCC
Q 013204 235 KKY--DILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSS-AYMPIGAILVSPEVSEVIHSQSNTLGSFSHGF 309 (447)
Q Consensus 235 ~~~--g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~g-g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (447)
+++ |+++++|.+... +..++-+..-.|+++ .+|-++| +-.-.|+++.+++..+.+.... ...+
T Consensus 170 ~~~~~g~~~vVDnT~at------P~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~-----~~~G- 237 (391)
T d1cl1a_ 170 RSVVPDAIIMIDNTWAA------GVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENA-----YLMG- 237 (391)
T ss_dssp HHHCTTCEEEEECTTTT------TTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHH-----HHTT-
T ss_pred HhccCCcEEEEeccccc------hhhhcccccccceEEeecchhccccccccccceeccccccccchhhh-----hccc-
Confidence 775 999999988652 222333334468876 4588877 2234466777877766655321 1111
Q ss_pred CCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhh
Q 013204 310 TYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA 350 (447)
Q Consensus 310 t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~ 350 (447)
...+|..+...+..|+-+. -..++..+++..+.+.|++
T Consensus 238 -~~~~p~~a~ll~rgl~TL~--lR~~~~~~nA~~vA~~L~~ 275 (391)
T d1cl1a_ 238 -QMVDADTAYITSRGLRTLG--VRLRQHHESSLKVAEWLAE 275 (391)
T ss_dssp -CCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHT
T ss_pred -ccCCchhhhhhhccchhHH--HHHHHHHHHHHHHHHHHHh
Confidence 2335655554444443221 1234445555666666654
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.11 E-value=2.2e-09 Score=98.46 Aligned_cols=212 Identities=15% Similarity=0.108 Sum_probs=124.5
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP 160 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 160 (447)
.|+++++++- +.+.++.++||..|+..++..+. ..+++||+..+.|.|....... ..+.+++.
T Consensus 2 aLE~~la~Le---g~~~a~~~sSGMaAi~~~l~~ll--------~~Gd~iv~~~~~Yg~t~~~~~~------~l~~~gi~ 64 (331)
T d1pffa_ 2 ALEGKIAKLE---HAEACAATASGMGAIAASVWTFL--------KAGDHLISDDCLYGCTHALFEH------QLRKFGVE 64 (331)
T ss_dssp HHHHHHHHHH---TCSEEEEESSHHHHHHHHHHHHC--------CTTCEEEEESCCCHHHHHHHHT------HHHHTTCE
T ss_pred HHHHHHHHHh---CCCeEEEECCHHHHHHHHHHHHh--------CCCCEEEEeCCCchHHHHHHHH------HHHhcCeE
Confidence 4778888884 45578889999999998887553 3347899989999776422211 01111211
Q ss_pred CCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH-HhcCC
Q 013204 161 APFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV-KKYDI 239 (447)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~-~~~g~ 239 (447)
+..++..+ .+.+++.+. +.++.|.+|...+....++. ++.+++++ +++|+
T Consensus 65 ---~~~~d~~d------------------~~~~~~~i~----~~t~~i~~Es~~np~~~v~d----~~~~~~~~a~~~~~ 115 (331)
T d1pffa_ 65 ---VDFIDMAV------------------PGNIEKHLK----PNTRIVYFETPANPTLKVID----IEDAVKQARKQKDI 115 (331)
T ss_dssp ---EEEECTTS------------------TTHHHHTCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSC
T ss_pred ---EEEecccc------------------hhhHhhhcc----cccceeeeeccccccccccc----chhhhhhhhcccCc
Confidence 11222211 144555443 46778888877666555554 88888875 67899
Q ss_pred EEEEehhhcCCCccccccccccCCCCCCeee--ecccCCC-cccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHH
Q 013204 240 LFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSS-AYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPV 316 (447)
Q Consensus 240 ~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~g-g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 316 (447)
++|+|.+... +..++-...-.|+++ .+|-++| +-.-.|+++.+++........ .+....-...+|.
T Consensus 116 ~~vVDnT~at------p~~~~pl~~GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~-----~~~~~~G~~l~p~ 184 (331)
T d1pffa_ 116 LVIVDNTFAS------PILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQ-----GIKDITGAIISPH 184 (331)
T ss_dssp EEEEECTTTH------HHHCCGGGGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHT-----CCCCCCCCCCCHH
T ss_pred eEEeeccccc------cccccccccCCCEEEecchhhcCCCCccccccccccccchhhhhhh-----hhhhccCCCCCHH
Confidence 9999988642 222333334478886 4598877 323446677777765544321 1111112234677
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc
Q 013204 317 SCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF 351 (447)
Q Consensus 317 ~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l 351 (447)
.+...+..++-+. -..++..++...+.+.|++-
T Consensus 185 ~a~ll~rgl~Tl~--~Rm~~~~~nA~~lA~~L~~h 217 (331)
T d1pffa_ 185 DAWLITRGTLTLD--MRVKRAAENAQKVAEFLHEH 217 (331)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhC
Confidence 6666666665432 22455555666666666654
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.10 E-value=5.4e-08 Score=90.92 Aligned_cols=218 Identities=15% Similarity=0.103 Sum_probs=126.0
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 154 (447)
.++-...|++.++++- +-+.++.++||..|+..++.... .+++.|++-+..|.|........ .
T Consensus 57 ~nPT~~~le~~la~LE---g~~~a~~~sSGmaAi~~~~l~l~--------~~gd~vv~~~~~yg~t~~~~~~~------~ 119 (394)
T d1e5ea_ 57 GNPTVSNLEGKIAFLE---KTEACVATSSGMGAIAATVLTIL--------KAGDHLISDECLYGCTHALFEHA------L 119 (394)
T ss_dssp CCHHHHHHHHHHHHHH---TCSEEEEESSHHHHHHHHHHHHC--------CTTCEEEEESCCCHHHHHHHHTH------H
T ss_pred CCHHHHHHHHHHHHHh---CCcceeeeccchHHHHHHHHhhc--------ccccccccccceeehhhHhHHHH------h
Confidence 4667778999998884 45578899999999998876553 34577777777775543221110 0
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
..++. ....++..+ .+++++.+. +.+.+|.+|...+....++. ++++.+.+
T Consensus 120 ~~~gi---~~~~~d~~d------------------~~~~~~~i~----~~t~lv~~Etp~NP~l~v~D----i~~~~~~~ 170 (394)
T d1e5ea_ 120 TKFGI---QVDFINTAI------------------PGEVKKHMK----PNTKIVYFETPANPTLKIID----MERVCKDA 170 (394)
T ss_dssp HHTTC---EEEEECTTS------------------TTHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHH
T ss_pred hccce---eeeccCCCC------------------HHHHHHhhc----ccccEEEEeccCCcceeeeh----hhhhhhcc
Confidence 01111 112222211 155666554 46778888877666555555 88888766
Q ss_pred H-hcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCC-cccceeEEEeChhHHHHhhhccCCCCccCcCCC
Q 013204 235 K-KYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSS-AYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFT 310 (447)
Q Consensus 235 ~-~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~g-g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t 310 (447)
+ ++|+++|+|.+.+. +..++-+..-.|+++ .+|-++| +-.-.|+++++++.....+.. .+....-
T Consensus 171 ~~~~g~~vvvDnT~at------P~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~-----~~~~~~G 239 (394)
T d1e5ea_ 171 HSQEGVLVIADNTFCS------PMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMV-----GIKDITG 239 (394)
T ss_dssp HTSTTCEEEEECTTTC------TTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHT-----CCCCCCC
T ss_pred ccccCeEEEecCcccC------cccCCchhcCCCEEEechhhhcCCCcccccccccchhhHHHHHHHH-----HHHHhhC
Confidence 5 57899999988652 222333334468886 5698877 323445677888876654321 1111112
Q ss_pred CCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc
Q 013204 311 YSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF 351 (447)
Q Consensus 311 ~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l 351 (447)
...+|..+.-.+..|+-+. -..++..++...+.+.|++-
T Consensus 240 ~~lsp~~a~ll~rgl~TL~--lRm~r~~~nA~~lA~~L~~h 278 (394)
T d1e5ea_ 240 SVISPHDAWLITRGLSTLN--IRMKAESENAMKVAEYLKSH 278 (394)
T ss_dssp CCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTC
T ss_pred CCCChHHHHHHHhhchhHH--HHHHHHHHHHHHHHHHHhhc
Confidence 2345666655555554221 12345555666666666543
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.04 E-value=1.1e-07 Score=89.16 Aligned_cols=212 Identities=14% Similarity=0.092 Sum_probs=125.8
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-CCCccccccccccCCCCCCe
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-AFGRLGTMFGCDKYSIKPDL 268 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-g~g~~g~~~~~~~~~~~~d~ 268 (447)
.++++++.....| .+||+-...-. .. --+++++++|++.|++|++|-.|. |+--.| .+. +-+. ..|+
T Consensus 165 yd~~~~~a~~~kP---klIi~G~S~y~---r~---~d~~~~reIad~vga~l~~D~aH~aGLIA~g-~~~-sP~~-~aDv 232 (463)
T d2a7va1 165 YNQLALTARLFRP---RLIIAGTSAYA---RL---IDYARMREVCDEVKAHLLADMAHISGLVAAK-VIP-SPFK-HADI 232 (463)
T ss_dssp HHHHHHHHHHHCC---SEEEECCSSCC---SC---CCHHHHHHHHHHTTCEEEEECGGGHHHHHTT-SSC-CGGG-TCSE
T ss_pred HHHHHHHHhhcCC---ceEEecccccc---cc---cCHHHHHHHhhcccceEEechhhhhHHhhhh-hhc-Chhh-hhhh
Confidence 4788888877665 46666554221 12 228999999999999999999886 441111 111 1111 2699
Q ss_pred eeec--ccCCCcccceeEEEeCh---------------hHHHHhhhccCCCCccCcCCCCCCcHHH-HHHHHHHHHHHhh
Q 013204 269 VSFA--KALSSAYMPIGAILVSP---------------EVSEVIHSQSNTLGSFSHGFTYSGHPVS-CAVAIEALKIYKE 330 (447)
Q Consensus 269 v~~s--K~l~gg~~~~g~~~~~~---------------~~~~~~~~~~~~~~~~~~~~t~~~~~~~-~~aa~a~l~~~~~ 330 (447)
++.+ |.|.| .+-|.++.++ ++.+.+... ...+ ..+++.+. +++-..++....+
T Consensus 233 vt~tTHKTlrG--PrgGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~a------vFPg-~qggph~h~iAa~Ava~~ea~~ 303 (463)
T d2a7va1 233 VTTTTHKTLRG--ARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFA------VFPS-LQGGPHNHAIAAVAVALKQACT 303 (463)
T ss_dssp EEEESSGGGCS--CSCEEEEEECSEEEEETTTEEEEECCCHHHHHHH------HTTT-TCCSCCHHHHHHHHHHHHHHHS
T ss_pred hhchhhhhhcC--CCceEEEEcccccccccccCccchhHHHHHhhhh------cCcc-cchhhhhhhHHHHHHHHHHhcC
Confidence 9876 89988 5778888765 445555431 1111 22222233 3332334444333
Q ss_pred h---cHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee--
Q 013204 331 R---NIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-- 405 (447)
Q Consensus 331 ~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-- 405 (447)
+ +...++.++.+.|.+.|.+. ++.++..- -...++.+++..... ......+.|.+.||.+--.
T Consensus 304 ~~fk~Ya~qVv~NAk~La~~L~~~-G~~vv~gg-TdnHlvlvdl~~~~~----------~G~~ae~~Le~~gI~~Nkn~i 371 (463)
T d2a7va1 304 PMFREYSLQVLKNARAMADALLER-GYSLVSGG-TDNHLVLVDLRPKGL----------DGARAERVLELVSITANKNTC 371 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGS-CSSSEEEEECTTTTC----------CHHHHHHHHHHTTEECEEECC
T ss_pred chHHHHHHHHHHHHHHHHHHHHhC-CCeeecCC-CCCceeeeeccccCC----------CHHHHHHHHHhccCccCCccC
Confidence 3 45567777778888887765 33333211 112244566543221 1455667888899887632
Q ss_pred --------CCEEEEecC----CCCCHHHHHHHHHHHHHHHH
Q 013204 406 --------GDNIMMSPP----FIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 406 --------g~~iR~~~~----~~~t~e~i~~~~~~l~~~l~ 434 (447)
.+.|||..| ....++|+.++.+.|.+++.
T Consensus 372 P~D~~~~~~sGiRiGT~a~TtrG~~e~dm~~iA~~I~~~l~ 412 (463)
T d2a7va1 372 PGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 412 (463)
T ss_dssp TTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 156999977 34678999988888877664
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.01 E-value=1.5e-07 Score=88.50 Aligned_cols=213 Identities=13% Similarity=0.116 Sum_probs=125.8
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-CCCccccccccccCCCCCCe
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-AFGRLGTMFGCDKYSIKPDL 268 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-g~g~~g~~~~~~~~~~~~d~ 268 (447)
.++++++.....| .+||+-...-. ... -+++++++|++.|++|++|-.|. |+--.| .+. +-+. ..|+
T Consensus 169 yd~l~~~a~~~kP---klIi~G~S~y~---r~~---d~~~~reIad~vga~l~~D~aH~aGLIA~g-~~~-sPl~-~aDv 236 (470)
T d1rv3a_ 169 YDRLEENARLFHP---KLIIAGTSCYS---RNL---DYGRLRKIADENGAYLMADMAHISGLVVAG-VVP-SPFE-HCHV 236 (470)
T ss_dssp HHHHHHHHHHHCC---SEEEECCSSCC---SCC---CHHHHHHHHHHTTCEEEEECTTTHHHHHHT-SSC-CGGG-TCSE
T ss_pred HHHHHHHHHhhCc---ceEeechhhcc---ccC---CHHHHHHHHhccCCeEEecchhhhhhcccc-ccC-Chhh-eeee
Confidence 4778888776655 46676554221 122 28999999999999999998875 441111 111 1111 2589
Q ss_pred eeec--ccCCCcccceeEEEeChh---------------HHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh
Q 013204 269 VSFA--KALSSAYMPIGAILVSPE---------------VSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER 331 (447)
Q Consensus 269 v~~s--K~l~gg~~~~g~~~~~~~---------------~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~ 331 (447)
||.+ |.|.| .+-|.++.+++ +.+.+... ...+..-+++.-.+++...+++....+
T Consensus 237 vt~tTHKtlrG--PrgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~a------vFPg~qggph~~~IAa~Ava~~ea~~~ 308 (470)
T d1rv3a_ 237 VTTTTHKTLRG--CRAGMIFYRRGVRSVDPKTGKEILYNLESLINSA------VFPGLQGGPHNHAIAGVAVALKQAMTP 308 (470)
T ss_dssp EEEESSGGGCC--CSCEEEEEECSBCC-------CCBCCHHHHHHHH------HTTTTCCSCCHHHHHHHHHHHHHHTSH
T ss_pred eeeehhhhccC--CcceEEEEccccccccccccchhHHHHHHHHhhh------cCccccccchhhHHHHHHHHHHHhcCh
Confidence 8766 89988 57788887653 55555432 111111222333333333445554443
Q ss_pred c---HHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee---
Q 013204 332 N---IVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS--- 405 (447)
Q Consensus 332 ~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--- 405 (447)
+ ..+++.++.+.|.+.|.+. ++.++..- -...++.+++..... ......+.|.+.||.+--.
T Consensus 309 ~fk~Ya~qvv~NAk~La~~L~~~-G~~v~~gg-TdnHlvlvdl~~~g~----------~g~~ae~~Le~~gI~~Nkn~iP 376 (470)
T d1rv3a_ 309 EFKEYQRQVVANCRALSAALVEL-GYKIVTGG-SDNHLILVDLRSKGT----------DGGRAEKVLEACSIACNKNTCP 376 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGS-CSSSEEEEEGGGGTC----------CHHHHHHHHHHTTEECEEECCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CceeccCC-CCCceEEEeecccCC----------cHHHHHHHHHHcCcEECCCcCC
Confidence 3 4456666777777777664 33332211 123345566644221 1445667788889987522
Q ss_pred -------CCEEEEecC----CCCCHHHHHHHHHHHHHHHH
Q 013204 406 -------GDNIMMSPP----FIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 406 -------g~~iR~~~~----~~~t~e~i~~~~~~l~~~l~ 434 (447)
.+.|||..| ....++|+.++.+.|.++++
T Consensus 377 ~D~~~~~~sGiRiGT~alTtrG~~e~dm~~iA~~I~~~l~ 416 (470)
T d1rv3a_ 377 GDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIE 416 (470)
T ss_dssp SCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCeeEecCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 256999977 45688999998888888774
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=98.95 E-value=1e-08 Score=96.42 Aligned_cols=165 Identities=16% Similarity=0.129 Sum_probs=104.2
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 154 (447)
.++-...|+++++++- +-+.++.++||-.|+.+++.... +.+++||+.++.|+|........-
T Consensus 56 ~nPT~~~LE~~la~LE---~~~~a~~~~SGmaAi~~~~~~l~--------~~gd~il~~~~~Yg~t~~l~~~~~------ 118 (421)
T d2ctza1 56 MNPTVDVLEKRLAALE---GGKAALATASGHAAQFLALTTLA--------QAGDNIVSTPNLYGGTFNQFKVTL------ 118 (421)
T ss_dssp BCHHHHHHHHHHHHHH---TCSEEEEESSHHHHHHHHHHHHC--------CTTCEEEECSCCCHHHHHHHHTHH------
T ss_pred CCHHHHHHHHHHHHHh---CCCeEEEecChHHHHHHHHHhhc--------ccccceeecCCcCCchhHHHHHHH------
Confidence 4566778889998884 44578899999999998887653 446899999999988743222110
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
+.+++. ...++..+. .+..++.+ .+++++|.+|...+....++. ++.|+++|
T Consensus 119 ~~~gi~---~~~~d~~~~-----------------~~~~~~~~----~~~t~li~~EtpsNP~l~v~D----i~~i~~iA 170 (421)
T d2ctza1 119 KRLGIE---VRFTSREER-----------------PEEFLALT----DEKTRAWWVESIGNPALNIPD----LEALAQAA 170 (421)
T ss_dssp HHTTCE---EEECCTTCC-----------------HHHHHHHC----CTTEEEEEEESSCTTTCCCCC----HHHHHHHH
T ss_pred hhcccc---ceecccccC-----------------cchhcccc----CCCceEEEEcCCCcceeEecc----hHHHHHHH
Confidence 011110 011111110 02223222 357889999998777766655 99999999
Q ss_pred HhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCC-cccceeEEEeCh
Q 013204 235 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSS-AYMPIGAILVSP 289 (447)
Q Consensus 235 ~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~g-g~~~~g~~~~~~ 289 (447)
+++|+++|+|.+... + +..+.-+..-.|+++ .+|-++| +-.-.|+++.+.
T Consensus 171 ~~~g~~~vvDnT~a~---t--P~~~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~ 223 (421)
T d2ctza1 171 REKGVALIVDNTFGM---G--GYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGG 223 (421)
T ss_dssp HHHTCEEEEECGGGG---G--GTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECS
T ss_pred HhcCCceEecccccc---c--ceeccccccCCcEEEEechhhccCCCCeEEEEEEcCC
Confidence 999999999988641 1 222333334478886 5698877 223334555543
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.91 E-value=3.8e-07 Score=84.92 Aligned_cols=212 Identities=16% Similarity=0.190 Sum_probs=123.2
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 154 (447)
.++-...|+++++++- +-+.++.++||..|+..++.++ ...++||+....|.+........-
T Consensus 53 gnPT~~~lE~~la~LE---~~~~a~~~sSGmaAi~~~l~~l---------~~gd~iv~~~~~yg~t~~~~~~~l------ 114 (393)
T d1n8pa_ 53 QNPNRENLERAVAALE---NAQYGLAFSSGSATTATILQSL---------PQGSHAVSIGDVYGGTHRYFTKVA------ 114 (393)
T ss_dssp CCHHHHHHHHHHHHHT---TCSEEEEESCHHHHHHHHHHTS---------CSSCEEEEESSCCHHHHHHHHHTS------
T ss_pred CChHHHHHHHHHHHHh---CCceEEEecCchhHHHhhhhcc---------cCCCeeeeeeeecccchhhhhhhh------
Confidence 4566778888888883 4557889999988876554332 335688998999977643322211
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
+.++... ..++. +.+++++.+. +++++|.+|..-+....++. ++.|+++|
T Consensus 115 ~~~gi~~---~~~~~-------------------~~~~~~~~i~----~~t~lv~~EspsNP~l~v~D----i~~ia~~a 164 (393)
T d1n8pa_ 115 NAHGVET---SFTND-------------------LLNDLPQLIK----ENTKLVWIETPTNPTLKVTD----IQKVADLI 164 (393)
T ss_dssp TTTCSCC---EEESS-------------------HHHHHHHHSC----SSEEEEEECSSCTTTCCCCC----HHHHHHHH
T ss_pred hccccee---EEeec-------------------chHHHHHHhh----hhcceeEecCcchhhhhccc----hhhhhhhh
Confidence 1111111 11110 0245665553 57889999998776655555 89999998
Q ss_pred H----hcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCC-cccceeEEEeC-hhHHHHhhhccCCCCccC
Q 013204 235 K----KYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSS-AYMPIGAILVS-PEVSEVIHSQSNTLGSFS 306 (447)
Q Consensus 235 ~----~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~g-g~~~~g~~~~~-~~~~~~~~~~~~~~~~~~ 306 (447)
+ ++|+++|+|.+... +..++-+..-.|+++ ..|-++| +-.-.|+++.+ +++.+.++...
T Consensus 165 ~~~~~~~g~~lvVDnT~at------P~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~------- 231 (393)
T d1n8pa_ 165 KKHAAGQDVILVVDNTFLS------PYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQ------- 231 (393)
T ss_dssp HHHTTTTTCEEEEECTTTH------HHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHH-------
T ss_pred hhhcccCCceEEEecCccC------cccCCchhhCCCEEEEccccccCCCCccccceeeecchhHHHHHHHHH-------
Confidence 8 78899999988642 222333333468886 5598877 22334555544 55666664321
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHh
Q 013204 307 HGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVK 349 (447)
Q Consensus 307 ~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~ 349 (447)
...-...+|..+...+..++-+. -..++..++...+.+.|+
T Consensus 232 ~~~G~~~~p~~a~ll~rgl~Tl~--lR~~~~~~nA~~lA~~L~ 272 (393)
T d1n8pa_ 232 NAIGAIPSPFDAWLTHRGLKTLH--LRVRQAALSANKIAEFLA 272 (393)
T ss_dssp HHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHT
T ss_pred hhcCCCCChHHHHHHHhCCcchh--hHHHHHHHHHHHHHHHHH
Confidence 11122346766665555554322 123444445555555553
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=98.89 E-value=1.8e-07 Score=88.26 Aligned_cols=295 Identities=10% Similarity=0.029 Sum_probs=163.4
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeC-ChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTN-SGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPAL 153 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~-sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 153 (447)
..+..-++.+.++++. +++.+-+.. .|+.|...++.+++.++ +++++++- ..-|..+.+........
T Consensus 106 ~Lq~l~e~q~~l~elt---Gmd~~n~s~~~ga~a~~~~~~~~~~~~------~~~~~~v~-~~~~p~~~~v~~t~a~~-- 173 (437)
T d1wyua1 106 VLQATFEYQTMIAELA---GLEIANASMYDGATALAEGVLLALRET------GRMGVLVS-QGVHPEYRAVLRAYLEA-- 173 (437)
T ss_dssp HHHHHHHHHHHHHHHH---TSSEECSCBSSHHHHHHHHHHHHHHHH------TCCEEEEE-TTSCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhh---CCCccccCchHHHHHHHHHHHHHHhhh------cccccccc-cccChHHhhhhhhhccc--
Confidence 3445567888888885 666555543 78999988988887663 34666664 44555544432221111
Q ss_pred cCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHH
Q 013204 154 HQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAV 233 (447)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l 233 (447)
.+. .+..++..+. .... ++ -.+++++|++...+.- |.+- .++++.++
T Consensus 174 ---~g~---~vv~v~~~~~-~~~~-------------~~--------~~~~~Aavmi~~Pnt~-G~~e----d~~~i~~~ 220 (437)
T d1wyua1 174 ---VGA---KLLTLPLEGG-RTPL-------------PE--------VGEEVGAVVVQNPNFL-GALE----DLGPFAEA 220 (437)
T ss_dssp ---TTC---EEEEECCBTT-BCCC-------------CC--------CCTTEEEEEEESSCTT-SBCC----CHHHHHHH
T ss_pred ---cee---eEEeeecccc-cchh-------------hh--------hccceeEEEEcccccc-cccc----chHHHHHH
Confidence 000 0112222110 0000 00 1357888888887554 4442 28999999
Q ss_pred HHhcCCEEEEehhhcCCCccccccccccCCCCCCeeee-cc----cCCCcccceeEEEeChhHHHHhhhcc-----CCCC
Q 013204 234 VKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF-AK----ALSSAYMPIGAILVSPEVSEVIHSQS-----NTLG 303 (447)
Q Consensus 234 ~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~-sK----~l~gg~~~~g~~~~~~~~~~~~~~~~-----~~~~ 303 (447)
+++.|+++|+|--...++..-.++ . +-.|+++. +| .+++|+...|++.+++++...+-..- ...+
T Consensus 221 ~h~~G~l~~~~ad~~al~~l~~Pg---~--~GaDi~~g~~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G 295 (437)
T d1wyua1 221 AHGAGALFVAVADPLSLGVLKPPG---A--YGADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEG 295 (437)
T ss_dssp HHHTTCEEEEECCTTGGGTBCCHH---H--HTCSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTS
T ss_pred hhhccceEEeeechhhhhcccccc---c--cccceEeeccceeccccCCCcCccccccccchhhccccccccccccccCC
Confidence 999999988874322121111111 1 12587754 23 44455577889999988866542210 0000
Q ss_pred --cc---------------CcCCCCCCcHHHHHHHHHHHHHHhhhcH---HHHHHHHHHHHHHhHhhccCCCceeeEeee
Q 013204 304 --SF---------------SHGFTYSGHPVSCAVAIEALKIYKERNI---VEQVNKIAPKFQDGVKAFSDSPIIGEIRGT 363 (447)
Q Consensus 304 --~~---------------~~~~t~~~~~~~~~aa~a~l~~~~~~~~---~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~ 363 (447)
.+ ..+...+.+.+.+..+..-+..+..+++ .++...+..++++.|.++..... +...
T Consensus 296 ~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~~g~~~---~~~~ 372 (437)
T d1wyua1 296 RRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRP---FTPK 372 (437)
T ss_dssp CEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEE---CSCS
T ss_pred cccceeecccccccccccccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhcCCeec---cCCC
Confidence 00 0111123333333334444555444443 35666677888888877632211 1111
Q ss_pred eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEe------eCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 364 GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV------SGDNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 364 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~------~g~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
..+-.+.+.-+. ....+.++|+++|++... ..+.+.++|.-..|+++||+++++|++++
T Consensus 373 ~~f~ef~v~~~~-----------~~~~i~k~L~d~G~~~~~~~~~~~~~~~lli~~TE~~tkeeiD~~v~al~eil 437 (437)
T d1wyua1 373 PFFNEFALALPK-----------DPEAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (437)
T ss_dssp SBCSEEEEECSS-----------CHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred CeeeEEEEECCC-----------CHHHHHHHHHhCCCCCCcccccCCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 122222222111 155688999999997532 13579999999999999999999998864
|