Citrus Sinensis ID: 013209

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------
MEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQYLDKLFTGYYVQDFEVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVFAVSTRLFNSITSVFYGRKLDFDPVARFLVSYQHWTFYPVMCVARVNLYLQTLLLLFSKRKVPDRALNIMGTLVFWTWFPLLVSYLPNWPERVMFVMASFTVTAIQHIQFCLNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRSLSFFEANVWTIRTLRGAALQARDLTNPVPKNLLWEALNTHG
cccccccccHHHHHHccccccEEEEEccEEEEcccccccccccHHHHHccccccccHHHHHccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccccHHHHHcccccccccccccccccccccccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcEEEEEEEcccccccccccccccccHHHHHHHcccccccccccccEEEccccccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHccc
ccccccEEcHHHHcccEEccEEEEEEccEEEEccccccccccccHHHHHHcccEcHHHHHHccccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccHHHcccccHHHHHHHHHHHHHccccHHHHHHccccccccccccccccccccccEEEEcHHHHHcccccccccEEccHHHHcccccHHHHEHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHEEEHHHHHccEEEEEEEEccccccccccccccccHHHHHHHHccccccccHHHHHHccccEEEEHccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccc
MEAEKKYITAEELRTHNKAEDLWISIQGkvydvtewakqhpggdvpllnlagqdvtdafiayhpgtaWQYLDKLFtgyyvqdfevseISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSayvghdsghyqvmtspkfNKIAQLISGNCLTGISIAWWKwthnahhiacnsldydpdlqhipvfaVSTRLFNSItsvfygrkldfdpvARFLVSYQHWTFYPVMCVARVNLYLQTLLLLFskrkvpdralNIMGTLVFWTWFPLLvsylpnwpeRVMFVMASFTVTAIQHIQFCLNHFAanvylgppkgndwfekqtsgtldiacsswmdwfhgglqfqlehhlfprlprcqlrkispVVRDLckkhnmpyrslsfFEANVWTIRTLRGAAlqardltnpvpkNLLWEALNTHG
meaekkyitaeelrthnkaedlWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQYLDKLFTGYYVQDFEVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVFAVSTRLFNSITSVFYGRKLDFDPVARFLVSYQHWTFYPVMCVARVNLYLQTLLLLFSKRKVPDRALNIMGTLVFWTWFPLLVSYLPNWPERVMFVMASFTVTAIQHIQFCLNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRSLSFFEANVWTIRTLRGAAlqardltnpvpknlLWEALNTHG
MEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQYLDKLFTGYYVQDFEVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVFAVSTRLFNSITSVFYGRKLDFDPVARFLVSYQHWTFYPVMCVARVNLYLQTLLLLFSKRKVPDRALNIMGTLVFWTWFPLLVSYLPNWPERVMFVMASFTVTAIQHIQFCLNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRSLSFFEANVWTIRTLRGAALQARDLTNPVPKNLLWEALNTHG
**************THNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQYLDKLFTGYYVQDFEVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVFAVSTRLFNSITSVFYGRKLDFDPVARFLVSYQHWTFYPVMCVARVNLYLQTLLLLFSKRKVPDRALNIMGTLVFWTWFPLLVSYLPNWPERVMFVMASFTVTAIQHIQFCLNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRSLSFFEANVWTIRTLRGAALQARDLTNPVPKNLLWEA*****
****KKY***EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQYLDKLFTGYYVQDFEVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVFAVSTRLFNSITSVFYGRKLDFDPVARFLVSYQHWTFYPVMCVARVNLYLQTLLLLFSKRKVPDRALNIMGTLVFWTWFPLLVSYLPNWPERVMFVMASFTVTAIQHIQFCLNHFAA******PKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRSLSFFEANVWTIRTLRGAALQARDLTNPVPKNLLWEALNTH*
MEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQYLDKLFTGYYVQDFEVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVFAVSTRLFNSITSVFYGRKLDFDPVARFLVSYQHWTFYPVMCVARVNLYLQTLLLLFSKRKVPDRALNIMGTLVFWTWFPLLVSYLPNWPERVMFVMASFTVTAIQHIQFCLNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRSLSFFEANVWTIRTLRGAALQARDLTNPVPKNLLWEALNTHG
****KKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQYLDKLFTGYYVQDFEVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVFAVSTRLFNSITSVFYGRKLDFDPVARFLVSYQHWTFYPVMCVARVNLYLQTLLLLFSKRKVPDRALNIMGTLVFWTWFPLLVSYLPNWPERVMFVMASFTVTAIQHIQFCLNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRSLSFFEANVWTIRTLRGAALQARDLTNPVPKNLLWEALNT**
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MEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQYLDKLFTGYYVQDFEVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVFAVSTRLFNSITSVFYGRKLDFDPVARFLVSYQHWTFYPVMCVARVNLYLQTLLLLFSKRKVPDRALNIMGTLVFWTWFPLLVSYLPNWPERVMFVMASFTVTAIQHIQFCLNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRSLSFFEANVWTIRTLRGAALQARDLTNPVPKNLLWEALNTHG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query447 2.2.26 [Sep-21-2011]
Q43469458 Delta(8)-fatty-acid desat N/A no 0.991 0.967 0.729 0.0
Q9FR82446 Delta(8)-fatty-acid desat N/A no 0.997 1.0 0.709 0.0
Q6CMK7573 Delta(8)-fatty-acid desat yes no 0.885 0.691 0.328 6e-53
Q8NKG9568 Delta(8)-fatty-acid desat N/A no 0.850 0.669 0.313 4e-52
Q8NKG8573 Delta(8)-fatty-acid desat yes no 0.885 0.691 0.321 3e-51
A4IFP3443 Fatty acid desaturase 3 O no no 0.879 0.887 0.283 1e-40
Q4R749444 Fatty acid desaturase 2 O N/A no 0.870 0.876 0.286 2e-39
Q5REA7444 Fatty acid desaturase 2 O yes no 0.870 0.876 0.282 3e-39
O95864444 Fatty acid desaturase 2 O yes no 0.856 0.862 0.282 4e-39
A4FV48444 Fatty acid desaturase 2 O no no 0.906 0.912 0.288 1e-38
>sp|Q43469|SLD1_HELAN Delta(8)-fatty-acid desaturase OS=Helianthus annuus GN=sld1 PE=1 SV=1 Back     alignment and function desciption
 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/443 (72%), Positives = 382/443 (86%)

Query: 5   KKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHP 64
           KKYIT++EL+ HN   DLWISI GKVY+VTEWAK+HPGGD PL+NLAGQDVTDAFIA+HP
Sbjct: 16  KKYITSKELKKHNNPNDLWISILGKVYNVTEWAKEHPGGDAPLINLAGQDVTDAFIAFHP 75

Query: 65  GTAWQYLDKLFTGYYVQDFEVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFV 124
           GTAW++LDKLFTGY+++D++VS+IS+DYR+L  EFAK GMFEKK H    +L  V+L+  
Sbjct: 76  GTAWKHLDKLFTGYHLKDYQVSDISRDYRKLASEFAKAGMFEKKGHGVIYSLCFVSLLLS 135

Query: 125 VVVYGVLCCESVWAHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLT 184
             VYGVL   S W H+ SG +LG  W+Q AY+GHD+GHYQ+M +  +NK A +  GNC+T
Sbjct: 136 ACVYGVLYSGSFWIHMLSGAILGLAWMQIAYLGHDAGHYQMMATRGWNKFAGIFIGNCIT 195

Query: 185 GISIAWWKWTHNAHHIACNSLDYDPDLQHIPVFAVSTRLFNSITSVFYGRKLDFDPVARF 244
           GISIAWWKWTHNAHHIACNSLDYDPDLQH+P+ AVS++LFNSITSVFYGR+L FDP+ARF
Sbjct: 196 GISIAWWKWTHNAHHIACNSLDYDPDLQHLPMLAVSSKLFNSITSVFYGRQLTFDPLARF 255

Query: 245 LVSYQHWTFYPVMCVARVNLYLQTLLLLFSKRKVPDRALNIMGTLVFWTWFPLLVSYLPN 304
            VSYQH+ +YP+MCVARVNLYLQT+LLL SKRK+PDR LNI+GTL+FWTWFPLLVS LPN
Sbjct: 256 FVSYQHYLYYPIMCVARVNLYLQTILLLISKRKIPDRGLNILGTLIFWTWFPLLVSRLPN 315

Query: 305 WPERVMFVMASFTVTAIQHIQFCLNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDW 364
           WPERV FV+ SF VT IQHIQF LNHF+ +VY+GPPKG++WFEKQT GT+DIACSSWMDW
Sbjct: 316 WPERVAFVLVSFCVTGIQHIQFTLNHFSGDVYVGPPKGDNWFEKQTRGTIDIACSSWMDW 375

Query: 365 FHGGLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRSLSFFEANVWTIRTLRGAA 424
           F GGLQFQLEHHLFPRLPRC LR ISP+ R+LCKK+N+PY SLSF++ANV T++TLR AA
Sbjct: 376 FFGGLQFQLEHHLFPRLPRCHLRSISPICRELCKKYNLPYVSLSFYDANVTTLKTLRTAA 435

Query: 425 LQARDLTNPVPKNLLWEALNTHG 447
           LQARDLTNP P+NL WEA NTHG
Sbjct: 436 LQARDLTNPAPQNLAWEAFNTHG 458
Delta(8)-fatty-acid desaturase which introduces a double bond at the 8-position in 20-carbon fatty acids that have an existing delta-11 unsaturation. Involved in the biosynthesis of sphingolipids. In addition to their role as membrane components, sphingolipids act as secondary messengers by controlling metabolism and cell growth.
Helianthus annuus (taxid: 4232)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 9EC: .EC: 4
>sp|Q9FR82|SLD1_BOROF Delta(8)-fatty-acid desaturase OS=Borago officinalis GN=sld1 PE=1 SV=1 Back     alignment and function description
>sp|Q6CMK7|SLD1_KLULA Delta(8)-fatty-acid desaturase OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SLD PE=3 SV=1 Back     alignment and function description
>sp|Q8NKG9|SLD1_LACK1 Delta(8)-fatty-acid desaturase OS=Lachancea kluyveri (strain ATCC 58438 / CBS 3082 / CCRC 21498 / NBRC 1685 / JCM 7257 / NCYC 543 / NRRL Y-12651) GN=SLD PE=1 SV=1 Back     alignment and function description
>sp|Q8NKG8|SLD1_KLULC Delta(8)-fatty-acid desaturase OS=Kluyveromyces lactis GN=SLD PE=1 SV=1 Back     alignment and function description
>sp|A4IFP3|FADS3_BOVIN Fatty acid desaturase 3 OS=Bos taurus GN=FADS3 PE=2 SV=1 Back     alignment and function description
>sp|Q4R749|FADS2_MACFA Fatty acid desaturase 2 OS=Macaca fascicularis GN=FADS2 PE=2 SV=1 Back     alignment and function description
>sp|Q5REA7|FADS2_PONAB Fatty acid desaturase 2 OS=Pongo abelii GN=FADS2 PE=2 SV=1 Back     alignment and function description
>sp|O95864|FADS2_HUMAN Fatty acid desaturase 2 OS=Homo sapiens GN=FADS2 PE=1 SV=1 Back     alignment and function description
>sp|A4FV48|FADS2_BOVIN Fatty acid desaturase 2 OS=Bos taurus GN=FADS2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query447
224067948447 predicted protein [Populus trichocarpa] 1.0 1.0 0.814 0.0
224130426447 predicted protein [Populus trichocarpa] 1.0 1.0 0.787 0.0
449441406447 PREDICTED: delta(8)-fatty-acid desaturas 1.0 1.0 0.796 0.0
289065767447 delta-8 sphingolipid desaturase [Vernici 1.0 1.0 0.798 0.0
356498248450 PREDICTED: fatty acid desaturase 2-like 1.0 0.993 0.809 0.0
255541744447 fatty acid desaturase, putative [Ricinus 1.0 1.0 0.803 0.0
356502533451 PREDICTED: fatty acid desaturase 2-like 0.997 0.988 0.809 0.0
281323255448 delta-8 sphingolipid desaturase [Ribes n 0.997 0.995 0.773 0.0
281323253448 delta-8 sphingolipid desaturase [Ribes n 0.995 0.993 0.770 0.0
225454389447 PREDICTED: fatty acid desaturase 3 [Viti 1.0 1.0 0.778 0.0
>gi|224067948|ref|XP_002302613.1| predicted protein [Populus trichocarpa] gi|222844339|gb|EEE81886.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  791 bits (2043), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/447 (81%), Positives = 403/447 (90%)

Query: 1   MEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFI 60
           ME +KKYIT EEL+ HNK  DLWISIQGKVY+V++WA +HPGGDV LLNLAGQDVTDAFI
Sbjct: 1   MEGDKKYITGEELKQHNKEGDLWISIQGKVYNVSDWAYEHPGGDVALLNLAGQDVTDAFI 60

Query: 61  AYHPGTAWQYLDKLFTGYYVQDFEVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVA 120
           AYHPGTAWQYLDK FTGYY++DF+VSE SKDYRRL  EFAK G+FEKK H+   AL  +A
Sbjct: 61  AYHPGTAWQYLDKFFTGYYLKDFKVSETSKDYRRLASEFAKLGLFEKKGHITMYALASIA 120

Query: 121 LMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISG 180
           LMF VV+YGVLCC+SVWAHLGS ++LGFLWIQSAY+GHDSGHYQVM S  +NK AQ ++G
Sbjct: 121 LMFCVVLYGVLCCQSVWAHLGSALVLGFLWIQSAYIGHDSGHYQVMKSRGYNKFAQFVAG 180

Query: 181 NCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVFAVSTRLFNSITSVFYGRKLDFDP 240
           N LTGISIAWWKWTHNAHH+ACNSLDYDPDLQHIPVFAV++  FNSI S FYGR LDFDP
Sbjct: 181 NSLTGISIAWWKWTHNAHHLACNSLDYDPDLQHIPVFAVNSTFFNSIKSCFYGRYLDFDP 240

Query: 241 VARFLVSYQHWTFYPVMCVARVNLYLQTLLLLFSKRKVPDRALNIMGTLVFWTWFPLLVS 300
           VARF VSYQHWTFYPVMCVARVNLYLQT LLLFSKRK PDRALNI+G L+FWTWFPLLVS
Sbjct: 241 VARFFVSYQHWTFYPVMCVARVNLYLQTFLLLFSKRKFPDRALNILGILIFWTWFPLLVS 300

Query: 301 YLPNWPERVMFVMASFTVTAIQHIQFCLNHFAANVYLGPPKGNDWFEKQTSGTLDIACSS 360
            LPNWPERVMFV+ASF VTAIQH+QFCLNHFAA+VY GPPKGNDWFEKQT GTLDI+CSS
Sbjct: 301 CLPNWPERVMFVLASFAVTAIQHVQFCLNHFAADVYTGPPKGNDWFEKQTGGTLDISCSS 360

Query: 361 WMDWFHGGLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRSLSFFEANVWTIRTL 420
           WMDWF+GGLQFQLEHHLFPR+PRCQLR++SP+V+DLCKKHN+ YRSLSF+EANVWTIR L
Sbjct: 361 WMDWFYGGLQFQLEHHLFPRMPRCQLRRVSPLVQDLCKKHNLSYRSLSFWEANVWTIRRL 420

Query: 421 RGAALQARDLTNPVPKNLLWEALNTHG 447
           R  A QARDL+NPVPKNLLWEA+NTHG
Sbjct: 421 RNVAQQARDLSNPVPKNLLWEAVNTHG 447

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224130426|ref|XP_002320834.1| predicted protein [Populus trichocarpa] gi|118487585|gb|ABK95618.1| unknown [Populus trichocarpa] gi|222861607|gb|EEE99149.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449441406|ref|XP_004138473.1| PREDICTED: delta(8)-fatty-acid desaturase-like isoform 1 [Cucumis sativus] gi|449441408|ref|XP_004138474.1| PREDICTED: delta(8)-fatty-acid desaturase-like isoform 2 [Cucumis sativus] gi|449495238|ref|XP_004159774.1| PREDICTED: delta(8)-fatty-acid desaturase-like isoform 1 [Cucumis sativus] gi|449495242|ref|XP_004159775.1| PREDICTED: delta(8)-fatty-acid desaturase-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|289065767|gb|ADC80921.1| delta-8 sphingolipid desaturase [Vernicia fordii] Back     alignment and taxonomy information
>gi|356498248|ref|XP_003517965.1| PREDICTED: fatty acid desaturase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|255541744|ref|XP_002511936.1| fatty acid desaturase, putative [Ricinus communis] gi|223549116|gb|EEF50605.1| fatty acid desaturase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356502533|ref|XP_003520073.1| PREDICTED: fatty acid desaturase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|281323255|gb|ADA60229.1| delta-8 sphingolipid desaturase [Ribes nigrum] Back     alignment and taxonomy information
>gi|281323253|gb|ADA60228.1| delta-8 sphingolipid desaturase [Ribes nigrum] Back     alignment and taxonomy information
>gi|225454389|ref|XP_002279227.1| PREDICTED: fatty acid desaturase 3 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query447
TAIR|locus:2062928449 SLD2 "sphingoid LCB desaturase 0.997 0.993 0.748 7.6e-199
TAIR|locus:2082792449 SLD1 "sphingoid LCB desaturase 0.997 0.993 0.733 1.2e-191
ASPGD|ASPL0000078156545 AN4592 [Emericella nidulans (t 0.756 0.620 0.345 1.6e-63
CGD|CAL0004027584 SLD1 [Candida albicans (taxid: 0.742 0.568 0.322 6.9e-57
UNIPROTKB|Q5AEK8584 CaO19.260 "Potential delta(6)- 0.742 0.568 0.322 6.9e-57
UNIPROTKB|E1BMB7485 LOC615051 "Uncharacterized pro 0.888 0.818 0.305 2.2e-43
UNIPROTKB|A4IFP3443 FADS3 "Fatty acid desaturase 3 0.876 0.884 0.288 1.5e-42
UNIPROTKB|F1RKS7444 FADS2 "Uncharacterized protein 0.897 0.903 0.291 1.5e-42
UNIPROTKB|F1N8E1400 F1N8E1 "Uncharacterized protei 0.832 0.93 0.284 3.2e-42
UNIPROTKB|F1N8E2467 FADS1 "Uncharacterized protein 0.852 0.815 0.313 5.2e-42
TAIR|locus:2062928 SLD2 "sphingoid LCB desaturase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1925 (682.7 bits), Expect = 7.6e-199, P = 7.6e-199
 Identities = 334/446 (74%), Positives = 389/446 (87%)

Query:     2 EAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIA 61
             + +K+Y+T+E+L+ HNK  DLWISIQGKVYDV++W K HPGG+  +LNLAGQDVTDAFIA
Sbjct:     4 QTKKRYVTSEDLKKHNKPGDLWISIQGKVYDVSDWVKSHPGGEAAILNLAGQDVTDAFIA 63

Query:    62 YHPGTAWQYLDKLFTGYYVQDFEVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVAL 121
             YHPGTAW +L+KL  GY+V+D  VS++S+DYRRL  EF+K+G+F+KK HV    LTCV +
Sbjct:    64 YHPGTAWHHLEKLHNGYHVRDHHVSDVSRDYRRLAAEFSKRGLFDKKGHVTLYTLTCVGV 123

Query:   122 MFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGN 181
             M   V+YGVL C S+WAHL S +LLG LWIQSAYVGHDSGHY V ++   NK+ QL+SGN
Sbjct:   124 MLAAVLYGVLACTSIWAHLISAVLLGLLWIQSAYVGHDSGHYTVTSTKPCNKLIQLLSGN 183

Query:   182 CLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVFAVSTRLFNSITSVFYGRKLDFDPV 241
             CLTGISIAWWKWTHNAHHIACNSLD+DPDLQHIP+FAVST+ FNS+TS FYGRKL FDP+
Sbjct:   184 CLTGISIAWWKWTHNAHHIACNSLDHDPDLQHIPIFAVSTKFFNSMTSRFYGRKLTFDPL 243

Query:   242 ARFLVSYQHWTFYPVMCVARVNLYLQTLLLLFSKRKVPDRALNIMGTLVFWTWFPLLVSY 301
             ARFL+SYQHWTFYPVMCV R+NL++QT LLLFSKR VPDRALNI G LVFWTWFPLLVS+
Sbjct:   244 ARFLISYQHWTFYPVMCVGRINLFIQTFLLLFSKRHVPDRALNIAGILVFWTWFPLLVSF 303

Query:   302 LPNWPERVMFVMASFTVTAIQHIQFCLNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSW 361
             LPNW ER +FV  SF VTAIQH+QFCLNHFAA+VY GPP GNDWFEKQT+GTLDI+C S+
Sbjct:   304 LPNWQERFIFVFVSFAVTAIQHVQFCLNHFAADVYTGPPNGNDWFEKQTAGTLDISCRSF 363

Query:   362 MDWFHGGLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRSLSFFEANVWTIRTLR 421
             MDWF GGLQFQLEHHLFPRLPRC LR +SPVV++LCKKHN+PYRSLS++EANVWTIRTL+
Sbjct:   364 MDWFFGGLQFQLEHHLFPRLPRCHLRTVSPVVKELCKKHNLPYRSLSWWEANVWTIRTLK 423

Query:   422 GAALQARDLTNPVPKNLLWEALNTHG 447
              AA+QARD TNPV KNLLWEA+NTHG
Sbjct:   424 NAAIQARDATNPVLKNLLWEAVNTHG 449
GO:0005506 "iron ion binding" evidence=IEA
GO:0006629 "lipid metabolic process" evidence=IEA
GO:0006633 "fatty acid biosynthetic process" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=ISS
GO:0016717 "oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water" evidence=IEA
GO:0020037 "heme binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2082792 SLD1 "sphingoid LCB desaturase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000078156 AN4592 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
CGD|CAL0004027 SLD1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5AEK8 CaO19.260 "Potential delta(6)-or delta(8)-desaturase" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
UNIPROTKB|E1BMB7 LOC615051 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|A4IFP3 FADS3 "Fatty acid desaturase 3" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RKS7 FADS2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1N8E1 F1N8E1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1N8E2 FADS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FR82SLD1_BOROF1, ., 1, 4, ., 1, 9, ., 40.70910.99771.0N/Ano
Q43469SLD1_HELAN1, ., 1, 4, ., 1, 9, ., 40.72910.99100.9672N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.190.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query447
cd03506204 cd03506, Delta6-FADS-like, The Delta6 Fatty Acid D 3e-66
PLN03198526 PLN03198, PLN03198, delta6-acyl-lipid desaturase; 2e-58
PLN03199485 PLN03199, PLN03199, delta6-acyl-lipid desaturase-l 2e-53
pfam0017374 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid 1e-27
pfam00487251 pfam00487, FA_desaturase, Fatty acid desaturase 1e-22
PLN02252888 PLN02252, PLN02252, nitrate reductase [NADPH] 1e-15
COG5274164 COG5274, CYB5, Cytochrome b involved in lipid meta 8e-15
COG3239343 COG3239, DesA, Fatty acid desaturase [Lipid metabo 2e-10
cd01060122 cd01060, Membrane-FADS-like, The membrane fatty ac 1e-09
>gnl|CDD|239583 cd03506, Delta6-FADS-like, The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria Back     alignment and domain information 
 Score =  210 bits (537), Expect = 3e-66
 Identities = 88/264 (33%), Positives = 117/264 (44%), Gaps = 61/264 (23%)

Query: 140 LGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHH 199
           L   +LLG  W Q  ++ HD+GH QV  +   NK+  L  GN L G S  WWK  HN HH
Sbjct: 1   LLLAILLGLFWAQGGFLAHDAGHGQVFKNRWLNKLLGLTVGNLL-GASAGWWKNKHNVHH 59

Query: 200 IACNSLDYDPDLQHIPVFAVSTRLFNSITSVFYGRKLDFDPVARFLVSYQHWTFYPVMCV 259
              N L +DPD+  +P+ A S   F              D   RFL  YQH+ F+P++  
Sbjct: 60  AYTNILGHDPDIDTLPLLARSEPAF------------GKDQKKRFLHRYQHFYFFPLLA- 106

Query: 260 ARVNLYLQTLLLLFSKRKVPDRALNIMGTLVFWTWFPLLVSYLPNWPERVMFVMASFTVT 319
                    LLLL                                      F++      
Sbjct: 107 ---------LLLLA-------------------------------------FLVVQLAGG 120

Query: 320 AIQHIQFCLNHFAANVY-LGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLF 378
               + F LNHF   V        NDW E+Q   T +I  S ++DW HGGL +Q+EHHLF
Sbjct: 121 LWLAVVFQLNHFGMPVEDPPGESKNDWLERQVLTTRNITGSPFLDWLHGGLNYQIEHHLF 180

Query: 379 PRLPRCQLRKISPVVRDLCKKHNM 402
           P +PR    K++P+VR+LCKKH +
Sbjct: 181 PTMPRHNYPKVAPLVRELCKKHGL 204

These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; and acyl-CoA desaturases are present in ER membrane. ER-bound plant acyl-lipid desaturases and acyl-CoA desaturases require cytochrome b5 as an electron donor. Most of the eukaryotic desaturase domains have an adjacent N-terminal cytochrome b5-like domain. This domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain the residues: HXXXH, HXX(X)HH, and Q/HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within the homolog, stearoyl CoA desaturase. Length = 204
>gnl|CDD|178739 PLN03198, PLN03198, delta6-acyl-lipid desaturase; Provisional Back     alignment and domain information
>gnl|CDD|178740 PLN03199, PLN03199, delta6-acyl-lipid desaturase-like protein; Provisional Back     alignment and domain information
>gnl|CDD|201057 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid binding domain Back     alignment and domain information
>gnl|CDD|215943 pfam00487, FA_desaturase, Fatty acid desaturase Back     alignment and domain information
>gnl|CDD|215141 PLN02252, PLN02252, nitrate reductase [NADPH] Back     alignment and domain information
>gnl|CDD|227599 COG5274, CYB5, Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism] Back     alignment and domain information
>gnl|CDD|225779 COG3239, DesA, Fatty acid desaturase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|238511 cd01060, Membrane-FADS-like, The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 447
PLN03199485 delta6-acyl-lipid desaturase-like protein; Provisi 100.0
PLN03198526 delta6-acyl-lipid desaturase; Provisional 100.0
KOG4232430 consensus Delta 6-fatty acid desaturase/delta-8 sp 100.0
cd03506204 Delta6-FADS-like The Delta6 Fatty Acid Desaturase 100.0
PLN02598421 omega-6 fatty acid desaturase 100.0
PLN02498450 omega-3 fatty acid desaturase 100.0
COG3239343 DesA Fatty acid desaturase [Lipid metabolism] 100.0
PLN02505381 omega-6 fatty acid desaturase 100.0
cd03507222 Delta12-FADS-like The Delta12 Fatty Acid Desaturas 100.0
PF00487257 FA_desaturase: Fatty acid desaturase This entry is 100.0
cd03511285 Rhizopine-oxygenase-like This CD includes the puta 100.0
PLN02579323 sphingolipid delta-4 desaturase 100.0
cd03508289 Delta4-sphingolipid-FADS-like The Delta4-sphingoli 100.0
cd03514207 CrtR_beta-carotene-hydroxylase Beta-carotene hydro 100.0
cd03509288 DesA_FADS-like Fatty acid desaturase protein famil 99.97
cd03510175 Rhizobitoxine-FADS-like This CD includes the dihyd 99.97
cd03513225 CrtW_beta-carotene-ketolase Beta-carotene ketolase 99.96
KOG2987324 consensus Fatty acid desaturase [Lipid transport a 99.95
KOG0537124 consensus Cytochrome b5 [Energy production and con 99.9
cd03512314 Alkane-hydroxylase Alkane hydroxylase is a bacteri 99.82
PF0017376 Cyt-b5: Cytochrome b5-like Heme/Steroid binding do 99.8
KOG0536145 consensus Flavohemoprotein b5+b5R [Energy producti 99.79
cd01060122 Membrane-FADS-like The membrane fatty acid desatur 99.73
COG5274164 CYB5 Cytochrome b involved in lipid metabolism [En 99.64
PLN02252888 nitrate reductase [NADPH] 99.64
KOG4576167 consensus Sulfite oxidase, heme-binding component 99.35
COG1398289 OLE1 Fatty-acid desaturase [Lipid metabolism] 98.74
PLN02220299 delta-9 acyl-lipid desaturase 98.67
KOG1600321 consensus Fatty acid desaturase [Lipid transport a 98.66
COG489281 Predicted heme/steroid binding protein [General fu 98.62
cd03505178 Delta9-FADS-like The Delta9 Fatty Acid Desaturase 98.09
KOG1110183 consensus Putative steroid membrane receptor Hpr6. 97.68
KOG1108281 consensus Predicted heme/steroid binding protein [ 96.55
PF1490194 Jiv90: Cleavage inducing molecular chaperone 84.94
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6.7e-84  Score=655.35  Aligned_cols=419  Identities=26%  Similarity=0.498  Sum_probs=352.9

Q ss_pred             ccCCCCCHHHHhcccCCCCeEEEEcCEEEEcccccccccccccceecccCCChhHHHHhcCchhHHHhhhhccCCccccC
Q 013209            3 AEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQYLDKLFTGYYVQD   82 (447)
Q Consensus         3 ~~~~~~~~~e~~~h~~~~~~~v~i~g~vyd~t~~~~~hpgg~~~i~~~~g~D~t~~f~~~H~~~~~~~l~~~~vg~~~~~   82 (447)
                      ++.+.+|++||++|+++++|||+|+|+|||||+|. +||||+ .|..++|+|+|++|+++|+..++++|++|+|| ++++
T Consensus        21 ~~~~~~s~~ev~~h~~~~~~wi~i~g~vYDvt~f~-~HPGG~-~i~~~aG~DaT~~F~~~H~~~~~~~l~~~~iG-~l~~   97 (485)
T PLN03199         21 EKPQKISWQEVKKHASPDDAWIIHQNKVYDVSNWH-DHPGGA-VIFTHAGDDMTDIFAAFHAPGSQALMKKFYIG-DLIP   97 (485)
T ss_pred             ccCCccCHHHHHhhCCCCCeEEEECCEEEcCCCcC-cCCCch-HHHhhCCCChhHHHHHhcCHHHHHHHHhcccc-cccc
Confidence            45688999999999999999999999999999997 899998 78899999999999999999999999999999 8865


Q ss_pred             cc-------chhhhhhhHHHHHHHHHcccCCCCchhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHh
Q 013209           83 FE-------VSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSAY  155 (447)
Q Consensus        83 ~~-------~~~~s~~y~~lr~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llg~~~~~~~~  155 (447)
                      ++       .++++++|++|+++++++|+|++++..+..+++.+++++++++++.+...++|+.+++++++|++++++++
T Consensus        98 ~~~~~~~~~~~~~~~~y~~L~~~v~~~g~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aillg~~~~~~g~  177 (485)
T PLN03199         98 ESTEHKDPQQIAFEKGYRDLRAKLIMMGMFKSNKMFYAYKCLFNMAIWAAACALVFYSDRFAMHIASALLLGLFFQQCGW  177 (485)
T ss_pred             ccccccccchHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence            33       23457899999999999999999999988888888888888877666566778889999999999999999


Q ss_pred             hhcccCccccccChhHHHHHHHHHhhhcCCcchhhhccccccccccccCC-------CCCCCCCCCcchheehhhhcccc
Q 013209          156 VGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSL-------DYDPDLQHIPVFAVSTRLFNSIT  228 (447)
Q Consensus       156 l~Hd~~H~~~~~~~~~N~~~g~~~~~~~~g~s~~~wr~~H~~HH~~tn~~-------~~DpD~~~~p~~~~~~~~~~~~~  228 (447)
                      ++||++|+++++++++|+++|.++++++.|.|..||+.+||.||++||..       ++|||++..|++++++.+...+.
T Consensus       178 l~HDa~H~~~~~~~~~N~~~g~~~g~l~~G~S~~wW~~~Hn~HH~~tN~~~~~~~~~~~DPDI~~~p~l~~~~~~~~~~~  257 (485)
T PLN03199        178 LAHDFLHHQVFKKRKHGDLGGIFWGDLMQGFSMQWWKNKHNGHHAVPNLHCSSADAQDGDPDIDTMPLLAWSLKQAQSFR  257 (485)
T ss_pred             HHHhhhhhhhhCCchHHHHHHHHHHHhccCCChHHHHHHHhhhhcCcCcCccccCCCCCCCCCCCCceeeecHHHhhhHh
Confidence            99999999999999999999988888878999999999999999999974       68999998899999877553322


Q ss_pred             chhcccccCcchhHhHHhhhchhhHHHHhhhhhHHHHHHHHHHHHhc-------------CCCCchHHHHHHHHHHHHHH
Q 013209          229 SVFYGRKLDFDPVARFLVSYQHWTFYPVMCVARVNLYLQTLLLLFSK-------------RKVPDRALNIMGTLVFWTWF  295 (447)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~  295 (447)
                      +....  ...+...+++.++||++++|++.+.+++|+.+++...+..             +....+..|++..++++++.
T Consensus       258 ~~~~~--~~~~~~~~~~~~~Qh~~~~p~l~l~~l~w~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  335 (485)
T PLN03199        258 EINAD--GKDSGFVKFAIKFQAFFYFPILLLARISWLNESFKCAFGLGAASENAALELEAKGLQYPLLEKAGILLHYAWM  335 (485)
T ss_pred             hhhhh--ccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhHHHHHHHHHHHHHHHHH
Confidence            22111  2234556788999999999998888999988887655521             00012235666777777766


Q ss_pred             HHHhhcC--CchhHHHHHHHHHHHHhh-hhhhhhccCCCcccccCCCCCCCcHHHHHHhcccCCCC-----Cchhhhhhc
Q 013209          296 PLLVSYL--PNWPERVMFVMASFTVTA-IQHIQFCLNHFAANVYLGPPKGNDWFEKQTSGTLDIAC-----SSWMDWFHG  367 (447)
Q Consensus       296 ~~l~~~~--~~~~~~~~~~l~~~~~~~-~l~~~~~~~H~~~~~~~~~~~~~~~~~~q~~~s~~~~~-----~~~~~~l~~  367 (447)
                      ..+...+  .++...+.+++++.+++| +++++|.++|..++..+. +...+|.+.|+.||+|+++     +.|++||+|
T Consensus       336 ~~lp~~~~~~~~~~~l~~~~~~~~~~g~~l~~~f~l~H~~~~~~~~-~~~~d~~~~Qv~TT~n~~~~~~~~s~~~~wf~G  414 (485)
T PLN03199        336 FTLSSGFGRFSFAYSAFYFFTATASCGFFLAIVFGLGHNGMATYDA-DARPDFWKLQVTTTRNIIGGHGFPQAFVDWFCG  414 (485)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHHhhHheEEEecCCccccccCC-CCCccHHHHHHHhccCccCCCCCcchHHHHHhc
Confidence            5554323  223455667778888888 599999999999887533 3456899999999999986     679999999


Q ss_pred             ccCcccccccCCCCCccchhhhhHHHHHHHHHcCCCcccccHHHHHHHHHHHHHHHHHhh
Q 013209          368 GLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRSLSFFEANVWTIRTLRGAALQA  427 (447)
Q Consensus       368 glnyHieHHlfP~vP~~~L~~~~~~v~~~~~~~g~~Y~~~~~~~~~~~~~~~l~~~~~~~  427 (447)
                      ||||||||||||+||++|||+++|+||++|+|+|+||++.+|++++++++++|+++|++.
T Consensus       415 GLN~QIEHHLFP~mp~~~y~~i~piVk~~C~k~glpY~~~~~~~a~~~~~~~L~~vg~~~  474 (485)
T PLN03199        415 GLQYQVDHHLFPMLPRHNIAKCHALVESFCKEWGVKYHEADLVDGTMEVLHHLGKVADDF  474 (485)
T ss_pred             cchhhhhhhcCCCCchhhHHhhhHHHHHHHHHhCCCccccCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999763

>PLN03198 delta6-acyl-lipid desaturase; Provisional Back     alignment and domain information
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism] Back     alignment and domain information
>cd03506 Delta6-FADS-like The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria Back     alignment and domain information
>PLN02598 omega-6 fatty acid desaturase Back     alignment and domain information
>PLN02498 omega-3 fatty acid desaturase Back     alignment and domain information
>COG3239 DesA Fatty acid desaturase [Lipid metabolism] Back     alignment and domain information
>PLN02505 omega-6 fatty acid desaturase Back     alignment and domain information
>cd03507 Delta12-FADS-like The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria Back     alignment and domain information
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family Back     alignment and domain information
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins Back     alignment and domain information
>PLN02579 sphingolipid delta-4 desaturase Back     alignment and domain information
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins Back     alignment and domain information
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae Back     alignment and domain information
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria Back     alignment and domain information
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins Back     alignment and domain information
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene Back     alignment and domain information
>KOG2987 consensus Fatty acid desaturase [Lipid transport and metabolism] Back     alignment and domain information
>KOG0537 consensus Cytochrome b5 [Energy production and conversion] Back     alignment and domain information
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases Back     alignment and domain information
>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts [] Back     alignment and domain information
>KOG0536 consensus Flavohemoprotein b5+b5R [Energy production and conversion] Back     alignment and domain information
>cd01060 Membrane-FADS-like The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins Back     alignment and domain information
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism] Back     alignment and domain information
>PLN02252 nitrate reductase [NADPH] Back     alignment and domain information
>KOG4576 consensus Sulfite oxidase, heme-binding component [Energy production and conversion] Back     alignment and domain information
>COG1398 OLE1 Fatty-acid desaturase [Lipid metabolism] Back     alignment and domain information
>PLN02220 delta-9 acyl-lipid desaturase Back     alignment and domain information
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism] Back     alignment and domain information
>COG4892 Predicted heme/steroid binding protein [General function prediction only] Back     alignment and domain information
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi Back     alignment and domain information
>KOG1110 consensus Putative steroid membrane receptor Hpr6 Back     alignment and domain information
>KOG1108 consensus Predicted heme/steroid binding protein [General function prediction only] Back     alignment and domain information
>PF14901 Jiv90: Cleavage inducing molecular chaperone Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query447
3ozz_B82 Structure Of A Cytochrome B5 Core-Swap Mutant Lengt 1e-09
3lf5_A88 Structure Of Human Nadh Cytochrome B5 Oxidoreductas 2e-09
1x3x_A82 Crystal Structure Of Cytochrome B5 From Ascaris Suu 3e-09
1eue_A86 Rat Outer Mitochondrial Membrane Cytochrome B5 Leng 4e-09
1b5m_A84 Rat Outer Mitochondrial Membrane Cytochrome B5 Leng 5e-09
3mus_A87 2a Resolution Structure Of Rat Type B Cytochrome B5 5e-09
3ner_A92 Structure Of Human Type B Cytochrome B5 Length = 92 8e-09
1awp_A92 Rat Outer Mitochondrial Membrane Cytochrome B5 Leng 8e-09
1m2m_A82 Crystal Structure Of E44aE48AE56AD60A MUTANT OF Cyt 2e-08
1es1_A82 Crystal Structure Of Val61his Mutant Of Trypsin-Sol 2e-08
1f03_A82 Solution Structure Of Oxidized Bovine Microsomal Cy 2e-08
1j0q_A82 Solution Structure Of Oxidized Bovine Microsomal Cy 2e-08
2m33_A104 Solution Nmr Structure Of Full-length Oxidized Micr 2e-08
1do9_A94 Solution Structure Of Oxidized Microsomal Rabbit Cy 2e-08
1lqx_A82 Crystal Structure Of V45e Mutant Of Cytochrome B5 L 2e-08
1m20_A82 Crystal Structure Of F35y Mutant Of Trypsin-Solubil 2e-08
1cyo_A93 Bovine Cytochrome B(5) Length = 93 3e-08
1i5u_A82 Solution Structure Of Cytochrome B5 Triple Mutant ( 3e-08
1hko_A104 Nmr Structure Of Bovine Cytochrome B5 Length = 104 3e-08
1ehb_A82 Crystal Structure Of Recombinant Trypsin-Solubilize 4e-08
1sh4_A82 Solution Structure Of Oxidized Bovine Microsomal Cy 4e-08
1lr6_A82 Crystal Structure Of V45y Mutant Of Cytochrome B5 L 5e-08
2i96_A108 Solution Structure Of The Oxidized Microsomal Human 5e-08
1m2i_A82 Crystal Structure Of E44aE56A MUTANT OF CYTOCHROME 5e-08
2i89_A93 Structure Of Septuple Mutant Of Rat Outer Mitochond 8e-08
1u9u_A82 Crystal Structure Of F58y Mutant Of Cytochrome B5 L 9e-08
1icc_A87 Rat Outer Mitochondrial Membrane Cytochrome B5 Leng 1e-07
1ib7_A94 Solution Structure Of F35y Mutant Of Rat Ferro Cyto 1e-07
1jex_A94 Solution Structure Of A67v Mutant Of Rat Ferro Cyto 2e-07
1bfx_A99 The Solution Nmr Structure Of The B Form Of Oxidize 2e-07
1aqa_A94 Solution Structure Of Reduced Microsomal Rat Cytoch 2e-07
1i87_A98 Solution Structure Of The Water-Soluble Fragment Of 2e-07
1blv_A94 Solution Structure Of Oxidized Rat Microsomal Cytoc 2e-07
3ks0_A95 Crystal Structure Of The Heme Domain Of Flavocytoch 2e-07
1u9m_A82 Crystal Structure Of F58w Mutant Of Cytochrome B5 L 3e-07
1ldc_A511 X-Ray Structure Of Two Complexes Of The Y143f Flavo 4e-07
2oz0_A511 Mechanistic And Structural Studies Of H373q Flavocy 4e-07
1fcb_A511 Molecular Structure Of Flavocytochrome B2 At 2.4 An 4e-07
1sze_A511 L230a Mutant Flavocytochrome B2 With Benzoylformate 5e-07
1lj0_A92 Structure Of Quintuple Mutant Of The Rat Outer Mito 5e-07
1szf_A511 A198g:l230a Mutant Flavocytochrome B2 With Pyruvate 5e-07
1m59_A82 Crystal Structure Of P40v Mutant Of Trypsin-Solubil 6e-07
1ltd_A506 The 2.6 Angstroms Refined Structure Of The Escheric 6e-07
2ibj_A88 Structure Of House Fly Cytochrome B5 Length = 88 3e-06
1cxy_A90 Structure And Characterization Of Ectothiorhodospir 4e-05
>pdb|3OZZ|B Chain B, Structure Of A Cytochrome B5 Core-Swap Mutant Length = 82 Back     alignment and structure 
Iteration: 1

 Score = 61.2 bits (147), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 6  KYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAF 59
          KY T EE++ HN A+  W+ I  KVYD+T +  +HPGG+  LL  AG D T++F
Sbjct: 3  KYYTLEEIQKHNNAKSTWMIIHYKVYDITRFLSEHPGGEEVLLEQAGADATESF 56
>pdb|3LF5|A Chain A, Structure Of Human Nadh Cytochrome B5 Oxidoreductase (Ncb5or) B5 Domain To 1.25a Resolution Length = 88 Back     alignment and structure
>pdb|1X3X|A Chain A, Crystal Structure Of Cytochrome B5 From Ascaris Suum Length = 82 Back     alignment and structure
>pdb|1EUE|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5 Length = 86 Back     alignment and structure
>pdb|1B5M|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5 Length = 84 Back     alignment and structure
>pdb|3MUS|A Chain A, 2a Resolution Structure Of Rat Type B Cytochrome B5 Length = 87 Back     alignment and structure
>pdb|3NER|A Chain A, Structure Of Human Type B Cytochrome B5 Length = 92 Back     alignment and structure
>pdb|1AWP|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5 Length = 92 Back     alignment and structure
>pdb|1M2M|A Chain A, Crystal Structure Of E44aE48AE56AD60A MUTANT OF Cytochrome B5 Length = 82 Back     alignment and structure
>pdb|1ES1|A Chain A, Crystal Structure Of Val61his Mutant Of Trypsin-Solubilized Fragment Of Cytochrome B5 Length = 82 Back     alignment and structure
>pdb|1F03|A Chain A, Solution Structure Of Oxidized Bovine Microsomal Cytochrome B5 Mutant (E44a, E48a, E56a, D60a) And Its Interaction With Cytochrome C Length = 82 Back     alignment and structure
>pdb|1J0Q|A Chain A, Solution Structure Of Oxidized Bovine Microsomal Cytochrome B5 Mutant V61h Length = 82 Back     alignment and structure
>pdb|2M33|A Chain A, Solution Nmr Structure Of Full-length Oxidized Microsomal Rabbit Cytochrome B5 Length = 104 Back     alignment and structure
>pdb|1DO9|A Chain A, Solution Structure Of Oxidized Microsomal Rabbit Cytochrome B5. Factors Determining The Heterogeneous Binding Of The Heme Length = 94 Back     alignment and structure
>pdb|1LQX|A Chain A, Crystal Structure Of V45e Mutant Of Cytochrome B5 Length = 82 Back     alignment and structure
>pdb|1M20|A Chain A, Crystal Structure Of F35y Mutant Of Trypsin-Solubilized Fragment Of Cytochrome B5 Length = 82 Back     alignment and structure
>pdb|1CYO|A Chain A, Bovine Cytochrome B(5) Length = 93 Back     alignment and structure
>pdb|1I5U|A Chain A, Solution Structure Of Cytochrome B5 Triple Mutant (E48aE56AD60A) Length = 82 Back     alignment and structure
>pdb|1HKO|A Chain A, Nmr Structure Of Bovine Cytochrome B5 Length = 104 Back     alignment and structure
>pdb|1EHB|A Chain A, Crystal Structure Of Recombinant Trypsin-Solubilized Fragment Of Cytochrome B5 Length = 82 Back     alignment and structure
>pdb|1SH4|A Chain A, Solution Structure Of Oxidized Bovine Microsomal Cytochrome B5 Mutant V45h Length = 82 Back     alignment and structure
>pdb|1LR6|A Chain A, Crystal Structure Of V45y Mutant Of Cytochrome B5 Length = 82 Back     alignment and structure
>pdb|2I96|A Chain A, Solution Structure Of The Oxidized Microsomal Human Cytochrome B5 Length = 108 Back     alignment and structure
>pdb|1M2I|A Chain A, Crystal Structure Of E44aE56A MUTANT OF CYTOCHROME B5 Length = 82 Back     alignment and structure
>pdb|2I89|A Chain A, Structure Of Septuple Mutant Of Rat Outer Mitochondrial Membrane Cytochrome B5 Length = 93 Back     alignment and structure
>pdb|1U9U|A Chain A, Crystal Structure Of F58y Mutant Of Cytochrome B5 Length = 82 Back     alignment and structure
>pdb|1ICC|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5 Length = 87 Back     alignment and structure
>pdb|1JEX|A Chain A, Solution Structure Of A67v Mutant Of Rat Ferro Cytochrome B5 Length = 94 Back     alignment and structure
>pdb|1BFX|A Chain A, The Solution Nmr Structure Of The B Form Of Oxidized Rat Microsomal Cytochrome B5, Minimized Average Structure Length = 99 Back     alignment and structure
>pdb|1AQA|A Chain A, Solution Structure Of Reduced Microsomal Rat Cytochrome B5, Nmr, Minimized Average Structure Length = 94 Back     alignment and structure
>pdb|1I87|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat Hepatic Apocytochrome B5 Length = 98 Back     alignment and structure
>pdb|1BLV|A Chain A, Solution Structure Of Oxidized Rat Microsomal Cytochrome B5 In The Presence Of 2 M Guanidinium Chloride: Monitoring The Early Steps In Protein Unfolding Length = 94 Back     alignment and structure
>pdb|3KS0|A Chain A, Crystal Structure Of The Heme Domain Of Flavocytochrome B2 In Complex With Fab B2b4 Length = 95 Back     alignment and structure
>pdb|1U9M|A Chain A, Crystal Structure Of F58w Mutant Of Cytochrome B5 Length = 82 Back     alignment and structure
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f Flavocytochrome B2 Mutant Crystallized In The Presence Of Lactate Or Phenyl-Lactate Length = 511 Back     alignment and structure
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q Flavocytochrome B2: Effects Of Mutating The Active Site Base Length = 511 Back     alignment and structure
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms Resolution Length = 511 Back     alignment and structure
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate Length = 511 Back     alignment and structure
>pdb|1LJ0|A Chain A, Structure Of Quintuple Mutant Of The Rat Outer Mitocondrial Cytochrome B5. Length = 92 Back     alignment and structure
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound Length = 511 Back     alignment and structure
>pdb|1M59|A Chain A, Crystal Structure Of P40v Mutant Of Trypsin-Solubilized Fragment Of Cytochrome B5 Length = 82 Back     alignment and structure
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia Coli Recombinant Saccharomyces Cerevisiae Flavocytochrome B2-Sulphite Complex Length = 506 Back     alignment and structure
>pdb|2IBJ|A Chain A, Structure Of House Fly Cytochrome B5 Length = 88 Back     alignment and structure
>pdb|1CXY|A Chain A, Structure And Characterization Of Ectothiorhodospira Vacuolata Cytochrome B558, A Prokaryotic Homologue Of Cytochrome B5 Length = 90 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query447
3lf5_A88 Cytochrome B5 reductase 4; NCB5OR, electron transf 2e-31
1hko_A104 Cytochrome B5; electron transfer protein, heme, el 4e-31
3ner_A92 Cytochrome B5 type B; heme, electron transport; HE 3e-30
1cyo_A93 Cytochrome B5; electron transport; HET: HEM; 1.50A 3e-29
2ibj_A88 Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY dif 6e-29
1cxy_A90 Cytochrome B5; helix, beta-strand, electron transp 1e-28
2keo_A112 Probable E3 ubiquitin-protein ligase HERC2; protei 2e-28
1x3x_A82 Cytochrome B5; hemoprotein, porcine parasitic nama 7e-28
1mj4_A82 Sulfite oxidase; cytochrome B5, heme, oxidoreducta 5e-22
1kbi_A511 Cytochrome B2, L-LCR; flavocytochrome B2, electron 8e-19
1sox_A466 Sulfite oxidase; oxidoreductase, sulfite oxidation 8e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens} Length = 88 Back     alignment and structure
 Score =  114 bits (287), Expect = 2e-31
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 1  MEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFI 60
          M+     +T EEL+ HNK +D WI I+G VY+V+ + + HPGG+  L+  AG D T+ F 
Sbjct: 1  MKGRLIEVTEEELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTELFD 60

Query: 61 AYHP-GTAWQYLDKLFTGYYVQD 82
            H        L +   G     
Sbjct: 61 QVHRWVNYESMLKECLVGRMAIK 83
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A* Length = 104 Back     alignment and structure
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A* Length = 92 Back     alignment and structure
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ... Length = 93 Back     alignment and structure
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica} Length = 88 Back     alignment and structure
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1 Length = 90 Back     alignment and structure
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens} Length = 112 Back     alignment and structure
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum} Length = 82 Back     alignment and structure
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1 Length = 82 Back     alignment and structure
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* Length = 511 Back     alignment and structure
>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1 d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A* 3r19_A* Length = 466 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query447
3ner_A92 Cytochrome B5 type B; heme, electron transport; HE 99.9
3lf5_A88 Cytochrome B5 reductase 4; NCB5OR, electron transf 99.9
1cyo_A93 Cytochrome B5; electron transport; HET: HEM; 1.50A 99.9
1cxy_A90 Cytochrome B5; helix, beta-strand, electron transp 99.89
2ibj_A88 Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY dif 99.89
1hko_A104 Cytochrome B5; electron transfer protein, heme, el 99.89
2keo_A112 Probable E3 ubiquitin-protein ligase HERC2; protei 99.88
1x3x_A82 Cytochrome B5; hemoprotein, porcine parasitic nama 99.87
1mj4_A82 Sulfite oxidase; cytochrome B5, heme, oxidoreducta 99.87
1kbi_A511 Cytochrome B2, L-LCR; flavocytochrome B2, electron 99.67
1sox_A466 Sulfite oxidase; oxidoreductase, sulfite oxidation 99.67
1j03_A102 Putative steroid binding protein; alpha and beta, 99.54
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} SCOP: d.120.1.1 PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A* Back     alignment and structure
Probab=99.90  E-value=9.8e-25  Score=169.62  Aligned_cols=82  Identities=34%  Similarity=0.665  Sum_probs=76.5

Q ss_pred             CccCCCCCHHHHhcccCCCCeEEEEcCEEEEcccccccccccccceecccCCChhHHHHh-cCchhHHHhhhhccCCccc
Q 013209            2 EAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIA-YHPGTAWQYLDKLFTGYYV   80 (447)
Q Consensus         2 ~~~~~~~~~~e~~~h~~~~~~~v~i~g~vyd~t~~~~~hpgg~~~i~~~~g~D~t~~f~~-~H~~~~~~~l~~~~vg~~~   80 (447)
                      .++.+.||++||++|++.++|||+|+|+|||||+|++.||||..+|..++|+|+|++|+. .||..|+++|++|+|| ++
T Consensus         6 ~~~~~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~l~~~aG~DaT~~F~~~~Hs~~a~~~L~~~~IG-~l   84 (92)
T 3ner_A            6 ETSVTYYRLEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAREMLKQYYIG-DI   84 (92)
T ss_dssp             CCCSCEECHHHHTTCEETTEEEEEETTEEEECGGGTTTCTTCSHHHHTTTTSBCHHHHHHTTCCHHHHHHHGGGEEE-EE
T ss_pred             CCCCCeeCHHHHHhhCCCCCEEEEECCEEEEcccccccCCCHHHHHHHhcCCcchHHHHHcCCCHHHHHHHHhCeeE-EE
Confidence            356789999999999999999999999999999999999999999999999999999997 6999999999999999 88


Q ss_pred             cCcc
Q 013209           81 QDFE   84 (447)
Q Consensus        81 ~~~~   84 (447)
                      .+++
T Consensus        85 ~~~~   88 (92)
T 3ner_A           85 HPSD   88 (92)
T ss_dssp             CGGG
T ss_pred             ChHh
Confidence            7644
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens} Back     alignment and structure
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ... Back     alignment and structure
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1 Back     alignment and structure
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica} Back     alignment and structure
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A* Back     alignment and structure
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens} Back     alignment and structure
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum} Back     alignment and structure
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1 Back     alignment and structure
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* Back     alignment and structure
>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1 d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A* 3r19_A* Back     alignment and structure
>1j03_A Putative steroid binding protein; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.120.1.2 PDB: 1t0g_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 447
d1kbia297 d.120.1.1 (A:1-97) Flavocytochrome b2, N-terminal 8e-24
d1cyoa_88 d.120.1.1 (A:) Cytochrome b5 {Cow (Bos taurus) [Ta 4e-23
d1cxya_81 d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira 1e-21
d1euea_86 d.120.1.1 (A:) Cytochrome b5 {Rat (Rattus norvegic 2e-21
d1mj4a_80 d.120.1.1 (A:) Sulfite oxidase, N-terminal domain 2e-18
d1soxa291 d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal dom 2e-17
d1t0ga_109 d.120.1.2 (A:) Putative steroid binding protein AT 3e-05
>d1kbia2 d.120.1.1 (A:1-97) Flavocytochrome b2, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 97 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cytochrome b5-like heme/steroid binding domain
superfamily: Cytochrome b5-like heme/steroid binding domain
family: Cytochrome b5
domain: Flavocytochrome b2, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 93.1 bits (231), Expect = 8e-24
 Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 2/94 (2%)

Query: 1  MEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFI 60
          ++  K+ I+  E+  HNK +D W+ I G VYD+T +   HPGG   +   AG+DVT  F 
Sbjct: 4  LDMNKQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFE 63

Query: 61 AYHPGTAWQ--YLDKLFTGYYVQDFEVSEISKDY 92
            H           +   G          +   Y
Sbjct: 64 PLHAPNVIDKYIAPEKKLGPLQGSMPPELVCPPY 97
>d1cyoa_ d.120.1.1 (A:) Cytochrome b5 {Cow (Bos taurus) [TaxId: 9913]} Length = 88 Back     information, alignment and structure
>d1cxya_ d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira vacuolata [TaxId: 1054]} Length = 81 Back     information, alignment and structure
>d1euea_ d.120.1.1 (A:) Cytochrome b5 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86 Back     information, alignment and structure
>d1mj4a_ d.120.1.1 (A:) Sulfite oxidase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure
>d1soxa2 d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 Back     information, alignment and structure
>d1t0ga_ d.120.1.2 (A:) Putative steroid binding protein AT2G24940 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 109 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query447
d1cyoa_88 Cytochrome b5 {Cow (Bos taurus) [TaxId: 9913]} 99.93
d1euea_86 Cytochrome b5 {Rat (Rattus norvegicus) [TaxId: 101 99.92
d1cxya_81 Cytochrome b558 {Ectothiorhodospira vacuolata [Tax 99.92
d1kbia297 Flavocytochrome b2, N-terminal domain {Baker's yea 99.89
d1soxa291 Sulfite oxidase, N-terminal domain {Chicken (Gallu 99.89
d1mj4a_80 Sulfite oxidase, N-terminal domain {Human (Homo sa 99.87
d1t0ga_109 Putative steroid binding protein AT2G24940 {Thale 98.52
>d1cyoa_ d.120.1.1 (A:) Cytochrome b5 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cytochrome b5-like heme/steroid binding domain
superfamily: Cytochrome b5-like heme/steroid binding domain
family: Cytochrome b5
domain: Cytochrome b5
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=7.2e-27  Score=178.62  Aligned_cols=85  Identities=33%  Similarity=0.567  Sum_probs=78.9

Q ss_pred             ccCCCCCHHHHhcccCCCCeEEEEcCEEEEcccccccccccccceecccCCChhHHHHhc-CchhHHHhhhhccCCcccc
Q 013209            3 AEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAY-HPGTAWQYLDKLFTGYYVQ   81 (447)
Q Consensus         3 ~~~~~~~~~e~~~h~~~~~~~v~i~g~vyd~t~~~~~hpgg~~~i~~~~g~D~t~~f~~~-H~~~~~~~l~~~~vg~~~~   81 (447)
                      +..+.||++||++|++.++|||+|+|+|||||+|++.||||.++|..++|+|+|+.|+++ |+..++++|++|+|| ++.
T Consensus         2 ~~~k~yt~~Ev~~H~~~~d~Wvii~g~VYDvT~f~~~HPGG~~~i~~~aG~D~T~~F~~~~hs~~a~~~l~~~~IG-~l~   80 (88)
T d1cyoa_           2 KAVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIG-ELH   80 (88)
T ss_dssp             CSCCEECHHHHTTCEETTEEEEEETTEEEECTTTTTTCTTCSHHHHHHTTSBCHHHHHHTTCCHHHHHHHTTTEEE-EEC
T ss_pred             CccccccHHHHHhhCCCCCeEEEECCEEEecchhhcccCCchHHHHHHcCCchHHHHHHHCCCHHHHHHHHcCccE-EEC
Confidence            467899999999999999999999999999999999999999999999999999999987 888899999999999 898


Q ss_pred             Cccchhh
Q 013209           82 DFEVSEI   88 (447)
Q Consensus        82 ~~~~~~~   88 (447)
                      +++.+++
T Consensus        81 ~~~~~~~   87 (88)
T d1cyoa_          81 PDDRSKI   87 (88)
T ss_dssp             GGGGGGC
T ss_pred             ccccCcC
Confidence            7766543
>d1euea_ d.120.1.1 (A:) Cytochrome b5 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1cxya_ d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira vacuolata [TaxId: 1054]} Back     information, alignment and structure
>d1kbia2 d.120.1.1 (A:1-97) Flavocytochrome b2, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1soxa2 d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1mj4a_ d.120.1.1 (A:) Sulfite oxidase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t0ga_ d.120.1.2 (A:) Putative steroid binding protein AT2G24940 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure