Citrus Sinensis ID: 013217

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------
Protein Sequence
MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHcccccEEEcccccccHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHccccEEEcccccccccccccccccccccEEEEEccEEEccccccccccccHHHHHHHHHHccccEEEEccccccccccHHHHHHHHHHHccEEEEHHHHHHHHHHccccccccccccEEccccccccccccccEEEEEccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccEEEEEEcccccccHHHHHHHHHHccccccccccccccccccccccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHcEEcccccccccHHHHHHHccHHHHccccEEccEEcccccHHHHHHHHHHHHHHHHHHcccHHHcccEcccccHHHHHHHHHHHHcccccEEEEEcHHHcccHHHccHHHcccccHHHHHcEEEEEcEccccccEcHHHHHHHHHHHcccEEEEccccccccccHHHHHHHHHHHccEEEEEccccHHHHHccccccccccccEEEEEccccccccccEEEEEcccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccEEHHHcccccEEEEEcHHHcccHHHHHHHHHHccEEcEEcccccccccccccEEEEEcHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCltnkyseglpgkryyggneyIDELETLCQKRALAAFnldenkwgvnvqplsgspanfEVYTAILkphdrimgldlphgghlshgfmtpkrrvsgtsiyfesmpyrldestglvdydmLEKTAILFRPKliiagasayprdfdyprMRQIADAVGALLMMDMAHISGLVAAsvvadpfkycdvvtttthkslrgprggmiffkkdpvlgVELESainnavfpglqggphnhtiGGLAVCLkhaqspefkvyqNKVVSNCRALASRLVELGYKlvsggsdnhlvlvdlrpmgidgaRVEKILDMASITlnknsvpgdksalvpggirigspamttrgfseKEFVAIADFIHEGVEITLEAKKLVQgsklqdfmnfvtspnfslmNNVADLRGRVEalttqfpipgv
Flexible Loop (DISEMBL)
MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCltnkyseglpgkRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAsayprdfdyprMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTtthkslrgprggmiFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVsggsdnhlvlVDLRPMGIDGARVEKILDMASItlnknsvpgdksalvpGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEalttqfpipgv
Low Complexity Region (SEG)
MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV
Disordered region (IsUnstruct)
*******VCEIITK***RQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSV*****ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALT********
Disordered Region (DISOPRED)
*QACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSP*FSLMNNVADLRGRVEALTTQFPIPGV
Disordered Region (DISEMBL)
MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV
Disordered Region (DISPRO)
*QACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	447	2.2.26 [Sep-21-2011]
Q9SZJ5	517	Serine hydroxymethyltrans	no	no	0.993	0.858	0.617	1e-170
P50433	518	Serine hydroxymethyltrans	N/A	no	0.995	0.859	0.616	1e-168
P34899	518	Serine hydroxymethyltrans	N/A	no	0.995	0.859	0.607	1e-168
P49358	517	Serine hydroxymethyltrans	N/A	no	0.991	0.856	0.615	1e-165
P49357	517	Serine hydroxymethyltrans	N/A	no	0.993	0.858	0.603	1e-164
Q5E9P9	484	Serine hydroxymethyltrans	yes	no	0.984	0.909	0.609	1e-161
P34897	504	Serine hydroxymethyltrans	yes	no	0.982	0.871	0.600	1e-161
P35623	484	Serine hydroxymethyltrans	N/A	no	0.984	0.909	0.609	1e-160
P14519	504	Serine hydroxymethyltrans	yes	no	0.979	0.869	0.603	1e-160
Q3SZ20	504	Serine hydroxymethyltrans	no	no	0.979	0.869	0.599	1e-160

>sp|Q9SZJ5|GLYM_ARATH Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1

 Score =  597 bits (1538), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 281/455 (61%), Positives = 349/455 (76%), Gaps = 11/455 (2%)

Query: 1   MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 60
           ++  +PE+ +II  EK RQ+K LELI SENFTS +VM+AVGS +TNKYSEG PG RYYGG
Sbjct: 55  LEEVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGG 114

Query: 61  NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 120
           NEYID  ETLCQKRAL AF LD  KWGVNVQPLSGSPANF VYTA+LKPH+RIM LDLPH
Sbjct: 115 NEYIDMAETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFHVYTALLKPHERIMALDLPH 174

Query: 121 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 180
           GGHLSHG+ T  +++S  SI+FE+MPYRLDESTG +DYD +EK+A LFRPKLI+AGASAY
Sbjct: 175 GGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQMEKSATLFRPKLIVAGASAY 234

Query: 181 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 240
            R +DY R+R++ +   A+++ DMAHISGLVAA+V+  PF Y DVVTTTTHKSLRGPRG 
Sbjct: 235 ARLYDYARIRKVCNKQKAVMLADMAHISGLVAANVIPSPFDYADVVTTTTHKSLRGPRGA 294

Query: 241 MIFFKK---------DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 291
           MIFF+K           VL  + E  IN AVFPGLQGGPHNHTI GLAV LK A + E+K
Sbjct: 295 MIFFRKGVKEINKQGKEVL-YDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATTSEYK 353

Query: 292 VYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 351
            YQ +V+SN    A  L+E GY+LVSGG+DNHLVLV+L+P GIDG+RVEK+L+   I  N
Sbjct: 354 AYQEQVLSNSAKFAQTLMERGYELVSGGTDNHLVLVNLKPKGIDGSRVEKVLEAVHIASN 413

Query: 352 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQ 411
           KN+VPGD SA+VPGGIR+G+PA+T+RGF E++F  +A++  + V I L+ K   QG+KL+
Sbjct: 414 KNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLK 473

Query: 412 DFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 446
           DF++ + S + ++ + +A LR  VE    QFP  G
Sbjct: 474 DFVSAMESSS-TIQSEIAKLRHEVEEFAKQFPTIG 507

Interconversion of serine and glycine.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 2EC: .EC: 1

>sp|P50433|GLYM_SOLTU Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1

 Score =  591 bits (1523), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 280/454 (61%), Positives = 346/454 (76%), Gaps = 9/454 (1%)

Query: 1   MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 60
           ++  +PE+ +II  EK RQ+K LELI SENFTS +VM+AVGS +TNKYSEG PG RYYGG
Sbjct: 56  LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGG 115

Query: 61  NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 120
           NEYID  ETLCQKRAL AF LD  KWGVNVQPLSGSPANF+VYTA+LKPH+RIM LDLPH
Sbjct: 116 NEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPANFQVYTALLKPHERIMALDLPH 175

Query: 121 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 180
           GGHLSHG+ T  +++S  SI+FE+MPYRLDESTG +DYD LEK+A LFRPKLI+AGASAY
Sbjct: 176 GGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAY 235

Query: 181 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 240
            R +DY R+R++ +   A+L+ DMAHISGLVAA V+  PF Y DVVTTTTHKSLRGPRG 
Sbjct: 236 ARLYDYDRIRKVCNKQKAILLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGA 295

Query: 241 MIFFKK--------DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKV 292
           MIF++K           +  + E  IN AVFPGLQGGPHNHTI GLAV LK A +PE++ 
Sbjct: 296 MIFYRKGVKEVNKQGKEVFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYRA 355

Query: 293 YQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNK 352
           YQ +V+SN    A  L E GY+LVSGG+DNHLVLV+++  GIDG+RVEK+L+   I  NK
Sbjct: 356 YQEQVLSNSSKFAQALGEKGYELVSGGTDNHLVLVNMKNKGIDGSRVEKVLEAVHIAANK 415

Query: 353 NSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQD 412
           N+VPGD SA+VPGGIR+G+PA+T+RGF E++FV +ADF    V+I ++ K   QG+KL+D
Sbjct: 416 NTVPGDVSAMVPGGIRMGTPALTSRGFLEEDFVKVADFFDAAVKIAVKVKAETQGTKLKD 475

Query: 413 FMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 446
           F+  + S +  + + +A LR  VE    QFP  G
Sbjct: 476 FVATLES-SAPIKSEIAKLRHDVEEYAKQFPTIG 508

Interconversion of serine and glycine.

Solanum tuberosum (taxid: 4113)

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

>sp|P34899|GLYM_PEA Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1

 Score =  590 bits (1521), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 276/454 (60%), Positives = 346/454 (76%), Gaps = 9/454 (1%)

Query: 1   MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 60
           ++  +PE+ +II  EK RQ+K LELI SENFTS +VM+AVGS +TNKYSEG PG RYYGG
Sbjct: 56  LEVIDPEIADIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGG 115

Query: 61  NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 120
           NEYID  ETLCQKRAL AF LD  KWGVNVQPLSGSP+NF+VYTA+LKPHDRIM LDLPH
Sbjct: 116 NEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPSNFQVYTALLKPHDRIMALDLPH 175

Query: 121 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 180
           GGHLSHG+ T  +++S  SI+FE+MPYRLDESTG +DYD LEK+A LFRPKLI+AGASAY
Sbjct: 176 GGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAY 235

Query: 181 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 240
            R +DY R+R++ D   A+L+ DMAHISGLVAA V+  PF Y DVVTTTTHKSLRGPRG 
Sbjct: 236 ARLYDYARIRKVCDKQKAVLLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGA 295

Query: 241 MIFFKK--------DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKV 292
           MIFF+K           +  + E  IN AVFPGLQGGPHNHTI GLAV LK A +PE++ 
Sbjct: 296 MIFFRKGLKEVNKQGKEVFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYRA 355

Query: 293 YQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNK 352
           YQ +V+SN    A  L E GY LVSGG++NHLVLV+L+  GIDG+RVEK+L++  I  NK
Sbjct: 356 YQEQVLSNSSKFAKALSEKGYDLVSGGTENHLVLVNLKNKGIDGSRVEKVLELVHIAANK 415

Query: 353 NSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQD 412
           N+VPGD SA+VPGGIR+G+PA+T+RGF E++FV +A++    V + L+ K   +G+KL+D
Sbjct: 416 NTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEYFDAAVSLALKVKAESKGTKLKD 475

Query: 413 FMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 446
           F+  + + ++ + + ++ L+  VE    QFP  G
Sbjct: 476 FVEALQTSSY-VQSEISKLKHDVEEFAKQFPTIG 508

Interconversion of serine and glycine.

Pisum sativum (taxid: 3888)

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

>sp|P49358|GLYN_FLAPR Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1

 Score =  582 bits (1500), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 280/455 (61%), Positives = 342/455 (75%), Gaps = 12/455 (2%)

Query: 1   MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 60
           ++  +PE+ +II  EK RQ+K LELI SENFTS +VM+AVGS +TNKYSEG PG RYYGG
Sbjct: 56  LEVGDPEIADIIELEKARQWKGLELILSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGG 115

Query: 61  NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 120
           NEYID  ETLCQKRAL AF LD  KWGVNVQPLSGSPANF VYTA+LK HDRIM LDLPH
Sbjct: 116 NEYIDMAETLCQKRALEAFRLDAAKWGVNVQPLSGSPANFHVYTALLKAHDRIMALDLPH 175

Query: 121 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 180
           GGHLSHG+ T  +++S  SI+FE+MPYRL+ESTG +DYD LEK+A LFRPKLI+AGASAY
Sbjct: 176 GGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAY 235

Query: 181 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 240
            R +DY R+R++ D   A+L+ DMAHISGLVAA V+  PF Y DVVTTTTHKSLRGPRG 
Sbjct: 236 ARLYDYARIRKVCDKQKAILLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGA 295

Query: 241 MIFFKK---------DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 291
           MIFF+K           VL  + E  IN AVFPGLQGGPHNHTI GLAV LK A + E+K
Sbjct: 296 MIFFRKGVKEVNKQGKEVL-YDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTAEYK 354

Query: 292 VYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 351
            YQ +V+SNC   A  LV+ GY+LVSGG++NHLVLV+L+  GIDG+RVEK+L+   I  N
Sbjct: 355 AYQEQVMSNCAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAAN 414

Query: 352 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQ 411
           KN+VPGD SA+VPGGIR+G+PA+T+RGF E++F  +A      V++ ++ K   QG+KL+
Sbjct: 415 KNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYLFDLAVKLAVKIKGEAQGTKLK 474

Query: 412 DFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 446
           DF+  + S  F   + ++ LR  VE    QFP  G
Sbjct: 475 DFVAAMQSSAFQ--SEISKLRHDVEEYAKQFPTIG 507

Interconversion of serine and glycine.

Flaveria pringlei (taxid: 4226)

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

>sp|P49357|GLYM_FLAPR Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1

 Score =  577 bits (1486), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 274/454 (60%), Positives = 342/454 (75%), Gaps = 10/454 (2%)

Query: 1   MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 60
           ++  +PE+ +II  EK RQ+K LELI SENFTS +VM+AVGS +TNKYSEG PG RYYGG
Sbjct: 56  LEVVDPEIADIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGG 115

Query: 61  NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 120
           NEYID  ETLCQKRAL AF LD  KWGVNVQPLSGSPANF VYTA+LK HDRIM LDLPH
Sbjct: 116 NEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPANFHVYTALLKAHDRIMALDLPH 175

Query: 121 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 180
           GGHLSHG+ T  +++S  SI+FE+MPYRL+ESTG +DYD LEK+A LFRPKLI+AGASAY
Sbjct: 176 GGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAY 235

Query: 181 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 240
            R +DY R+R++ D   A+++ DMAHISGLVAA V+  PF Y DVVTTTTHKSLRGPRG 
Sbjct: 236 ARLYDYARIRKVCDKQKAIMLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGA 295

Query: 241 MIFFKK--------DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKV 292
           MIFF+K           +  + E  IN AVFPGLQGGPHNHTI GLAV LK A + E+K 
Sbjct: 296 MIFFRKGLKEVNKQGKEVFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTAEYKA 355

Query: 293 YQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNK 352
           YQ +V+SN    A  LV+ GY+LVSGG++NHLVLV+L+  GIDG++VEK+L+   I  NK
Sbjct: 356 YQEQVMSNSAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSKVEKVLEAVHIAANK 415

Query: 353 NSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQD 412
           N+VPGD SA+VPGGIR+G+PA+T+RGF E++F  +A F    V++ ++ K   +G+KL+D
Sbjct: 416 NTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDLAVKLAVKIKGEAKGTKLKD 475

Query: 413 FMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 446
           F+  + S   ++ + ++ LR  VE    QFP  G
Sbjct: 476 FVTAMESS--AIQSEISKLRHDVEEYAKQFPTIG 507

Interconversion of serine and glycine.

Flaveria pringlei (taxid: 4226)

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

>sp|Q5E9P9|GLYC_BOVIN Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3

 Score =  568 bits (1464), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 275/451 (60%), Positives = 338/451 (74%), Gaps = 11/451 (2%)

Query: 7   EVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDE 66
           EV  II KE  RQ   LELIASENF SRAV+EA+GSCL NKYSEG PG+RYYGG E+IDE
Sbjct: 32  EVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDE 91

Query: 67  LETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSH 126
           LE LCQKRAL  + LD   WGVNVQP SGSPANF VYTA+++PH RIMGLDLP GGHL+H
Sbjct: 92  LEVLCQKRALQVYGLDSQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTH 151

Query: 127 GFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDY 186
           GFMT K+++S TSI+FESMPY+++  TG ++YD LE+ A LF P+LIIAG S Y R+ DY
Sbjct: 152 GFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPRLIIAGTSCYSRNLDY 211

Query: 187 PRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKK 246
            R+R+IAD  GA LM DMAH+SGLVAA VV  PF++C VV+TTTHK+LRG R GMIF++K
Sbjct: 212 ARLRKIADDNGAYLMADMAHVSGLVAAGVVPSPFEHCHVVSTTTHKTLRGCRAGMIFYRK 271

Query: 247 -----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKV 297
                DP  G E    LES IN+AVFPGLQGGPHNH I G+AV LK A +PEF+ YQ +V
Sbjct: 272 GVRSVDPKTGRETRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFRAYQRQV 331

Query: 298 VSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPG 357
           V+NCRALA  L+ LGY++V+GGSDNHL+LVDLR  G DG R EK+L+  SI  NKN+ PG
Sbjct: 332 VANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPG 391

Query: 358 DKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQ-GSKLQDFMNF 416
           DKSAL P G+R+G+PA+T+RG  E++F  +A FIH G+E+TL+ +  V   + L++FM  
Sbjct: 392 DKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQDAVGVKATLKEFMEK 451

Query: 417 VTSPNFSLMNNVADLRGRVEALTTQFPIPGV 447
           +          VA LR  VE+  T FP+PG+
Sbjct: 452 LAGAE-EHHRAVAALRAEVESFATLFPLPGL 481

Interconversion of serine and glycine.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

>sp|P34897|GLYM_HUMAN Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3

 Score =  567 bits (1461), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 271/451 (60%), Positives = 340/451 (75%), Gaps = 12/451 (2%)

Query: 5   NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
           +PE+ E++ +EK+RQ + LELIASENF SRA +EA+GSCL NKYSEG PGKRYYGG E +
Sbjct: 53  DPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVV 112

Query: 65  DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
           DE+E LCQ+RAL AF+LD  +WGVNVQP SGSPAN  VYTA+L+PHDRIMGLDLP GGHL
Sbjct: 113 DEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHL 172

Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
           +HG+M+  +R+S TSI+FESMPY+L+  TGL+DY+ L  TA LFRP+LIIAG SAY R  
Sbjct: 173 THGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYARLI 232

Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
           DY RMR++ D V A L+ DMAHISGLVAA V+  PFK+ D+VTTTTHK+LRG R G+IF+
Sbjct: 233 DYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIFY 292

Query: 245 KK-----DPVLGVEL----ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQN 295
           +K     DP  G E+    E  IN AVFP LQGGPHNH I  +AV LK A +P F+ Y  
Sbjct: 293 RKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSL 352

Query: 296 KVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSV 355
           +V+ N RA+A  L+E GY LVSGG+DNHLVLVDLRP G+DGAR E++L++ SIT NKN+ 
Sbjct: 353 QVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTC 412

Query: 356 PGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMN 415
           PGD+SA+ PGG+R+G+PA+T+R F E +F  + DFI EGV I LE K   + +KLQDF +
Sbjct: 413 PGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKS--KTAKLQDFKS 470

Query: 416 FVTSPNFSLMNNVADLRGRVEALTTQFPIPG 446
           F+   +      +A+LR RVE     FP+PG
Sbjct: 471 FLLK-DSETSQRLANLRQRVEQFARAFPMPG 500

Contributes to the de novo mitochondrial thymidylate biosynthesis pathway. Required to prevent uracil accumulation in mtDNA. Interconversion of serine and glycine. Associates with mitochondrial DNA.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

>sp|P35623|GLYC_SHEEP Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1 PE=1 SV=3

 Score =  566 bits (1459), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 275/451 (60%), Positives = 337/451 (74%), Gaps = 11/451 (2%)

Query: 7   EVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDE 66
           EV  II KE  RQ   LELIASENF SRAV+EA+GSCL NKYSEG PG+RYYGG E+IDE
Sbjct: 32  EVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDE 91

Query: 67  LETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSH 126
           LE LCQKRAL  + LD   WGVNVQP SGSPANF VYTA+++PH RIMGLDLP GGHL+H
Sbjct: 92  LEVLCQKRALQVYGLDPECWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTH 151

Query: 127 GFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDY 186
           GFMT K+++S TSI+FESMPY+++  TG ++YD LE+ A LF P+LIIAG S Y R+ DY
Sbjct: 152 GFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPRLIIAGTSCYSRNLDY 211

Query: 187 PRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKK 246
            R+R+IAD  GA LM DMAHISGLVAA VV  PF++C VV+TTTHK+LRG R GMIF++K
Sbjct: 212 ARLRKIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVSTTTHKTLRGCRAGMIFYRK 271

Query: 247 -----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKV 297
                DP  G E    LES IN+AVFPGLQGGPHNH I G+AV LK A +PEF+ YQ +V
Sbjct: 272 GVRSVDPKTGKETRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFRAYQRQV 331

Query: 298 VSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPG 357
           V+NCRALA  L+ LGY++V+GGSDNHL+LVDLR  G DG R EK+L+  SI  NKN+ PG
Sbjct: 332 VANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPG 391

Query: 358 DKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQ-GSKLQDFMNF 416
           DKSAL P G+R+G+PA+T+RG  E++F  +A FIH G+E+TL+ +  V   + L++FM  
Sbjct: 392 DKSALRPSGLRLGTPALTSRGLLEEDFRKVAHFIHRGIELTLQIQDAVGVKATLKEFMEK 451

Query: 417 VTSPNFSLMNNVADLRGRVEALTTQFPIPGV 447
           +          V  LR  VE+  T FP+PG+
Sbjct: 452 LAGAE-EHQRAVTALRAEVESFATLFPLPGL 481

Interconversion of serine and glycine.

Ovis aries (taxid: 9940)

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

>sp|P14519|GLYM_RABIT Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2

 Score =  565 bits (1457), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 273/452 (60%), Positives = 341/452 (75%), Gaps = 14/452 (3%)

Query: 5   NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
           +PE+ E++ +EK+RQ + LELIASENF  RA +EA+GSCL NKYSEG PGKRYYGG E +
Sbjct: 53  DPEMWELLQREKDRQCRGLELIASENFCIRAALEALGSCLNNKYSEGYPGKRYYGGAEVV 112

Query: 65  DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
           DE+E LCQ+RAL AF+LD  +WGVNVQP SGSPAN   YTA+L+PHDRIMGLDLP GGHL
Sbjct: 113 DEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDLPDGGHL 172

Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
           +HG+M+  +RVS TSI+FESMPY+L+  TGL+DY+ L  TA LFRP+LIIAG SAY R  
Sbjct: 173 THGYMSDVKRVSATSIFFESMPYKLNPQTGLIDYEQLALTARLFRPRLIIAGTSAYARLI 232

Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
           DY RMR++ D V A L+ DMAHISGLVAA V+  PFK+ DVVTTTTHK+LRG R G+IF+
Sbjct: 233 DYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADVVTTTTHKTLRGARSGLIFY 292

Query: 245 KK-----DPVLGVEL----ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQN 295
           +K     DP  G E+    E  IN AVFP LQGGPHNH I  +AV LK A +P F+ Y  
Sbjct: 293 RKGVRTVDPKTGQEIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSL 352

Query: 296 KVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSV 355
           +V+ N RA+A  L+E GY LVSGG+DNHLVLVDLRP G+DGAR E++L++ SIT NKN+ 
Sbjct: 353 QVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTC 412

Query: 356 PGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMN 415
           PGD+SA+ PGG+R+G+PA+T+R F E +F  + DFI EGV I LE K+  + +KLQDF +
Sbjct: 413 PGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKR--KTAKLQDFKS 470

Query: 416 F-VTSPNFSLMNNVADLRGRVEALTTQFPIPG 446
           F +  P  S   ++ADLR RV+     FP+PG
Sbjct: 471 FLLKDPETS--QHLADLRRRVQQFARAFPMPG 500

Contributes to the de novo mitochondrial thymidylate biosynthesis pathway. Required to prevent uracil accumulation in mtDNA. Interconversion of serine and glycine. Associates with mitochondrial DNA.

Oryctolagus cuniculus (taxid: 9986)

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

>sp|Q3SZ20|GLYM_BOVIN Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1

 Score =  565 bits (1455), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 271/452 (59%), Positives = 342/452 (75%), Gaps = 14/452 (3%)

Query: 5   NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
           +PE+ E++ +EK+RQ + LELIASENF SRA +EA+GSCL NKYSEG PGKRYYGG E +
Sbjct: 53  DPEMWELLRREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVV 112

Query: 65  DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
           DE+E LCQ+RAL AF+LD  +WGVNVQP SGSPAN   YTA+L+PHDRIMGLDLP GGHL
Sbjct: 113 DEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDLPDGGHL 172

Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
           +HG+M+  +R+S TSI+FESMPY+L+  TGL+DYD L  TA LF+P+LIIAG SAY R  
Sbjct: 173 THGYMSDVKRISATSIFFESMPYKLNPQTGLIDYDQLALTARLFKPRLIIAGTSAYARLI 232

Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
           DY RMR++ D V A L+ DMAHISGLVAA V+  PFK+ D+VTTTTHK+LRG R G+IF+
Sbjct: 233 DYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIFY 292

Query: 245 KK-----DPVLGVEL----ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQN 295
           +K     DP  G E+    E  IN AVFP LQGGPHNH I  +AV LK A +P F+ Y  
Sbjct: 293 RKGVQAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSL 352

Query: 296 KVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSV 355
           +++ N +A+A+ L+E GY LVSGG+DNHLVLVDLRP G+DGAR E++L++ SIT NKN+ 
Sbjct: 353 QILKNAQAMANALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTC 412

Query: 356 PGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMN 415
           PGD+SA+ PGG+R+G+PA+T+RGF E +F  +  FI EGV I LE K   + +KLQDF +
Sbjct: 413 PGDRSAITPGGLRLGAPALTSRGFLEDDFRKVVGFIDEGVNIGLEVKS--KTTKLQDFKS 470

Query: 416 F-VTSPNFSLMNNVADLRGRVEALTTQFPIPG 446
           F +  P  S  + +ADLR RVE     FP+PG
Sbjct: 471 FLLKDPETS--HQLADLRQRVEQFARAFPMPG 500

Contributes to the de novo mitochondrial thymidylate biosynthesis pathway. Required to prevent uracil accumulation in mtDNA. Interconversion of serine and glycine. Associates with mitochondrial DNA.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	447
449460014	528	PREDICTED: serine hydroxymethyltransfera	1.0	0.846	0.890	0.0
224092216	529	serine hydroxymethyltransferase 8 [Popul	0.993	0.839	0.898	0.0
134142079	529	plastid serine hydroxymethyltransferase	1.0	0.844	0.890	0.0
225429452	528	PREDICTED: serine hydroxymethyltransfera	1.0	0.846	0.885	0.0
255557552	527	serine hydroxymethyltransferase, putativ	1.0	0.848	0.885	0.0
18418028	529	serine hydroxymethyltransferase 3 [Arabi	0.991	0.837	0.873	0.0
4049354	462	glycine hydroxymethyltransferase (EC 2.1	0.991	0.958	0.873	0.0
14030719	529	AT4g32520/F8B4_220 [Arabidopsis thaliana	0.991	0.837	0.873	0.0
297798710	530	hypothetical protein ARALYDRAFT_491471 [	0.991	0.835	0.864	0.0
351724373	536	serine hydroxymethyltransferase 4 [Glyci	1.0	0.833	0.831	0.0

>gi|449460014|ref|XP_004147741.1| PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Cucumis sativus] gi|449519543|ref|XP_004166794.1| PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Cucumis sativus]

 Score =  842 bits (2175), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/447 (89%), Positives = 428/447 (95%)

Query: 1   MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 60
           +   +PEV  II KEK+RQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG
Sbjct: 82  LSETDPEVRSIIDKEKQRQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 141

Query: 61  NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 120
           NE+IDELETLCQ+RALAAF+LD NKWGVNVQPLSGSPANFEVYTA+L PHDRIMGLDLPH
Sbjct: 142 NEHIDELETLCQQRALAAFHLDNNKWGVNVQPLSGSPANFEVYTAVLNPHDRIMGLDLPH 201

Query: 121 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 180
           GGHLSHGFMTPKRRVSGTSIYFESMPYRLDE+TG+VDYDMLEKTA LFRPKLIIAGASAY
Sbjct: 202 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDETTGIVDYDMLEKTANLFRPKLIIAGASAY 261

Query: 181 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 240
           PRDFDYPRMR+IADAVGA LMMDMAHISGLVAASVVADPF+YCD+VTTTTHKSLRGPRGG
Sbjct: 262 PRDFDYPRMRKIADAVGAFLMMDMAHISGLVAASVVADPFEYCDIVTTTTHKSLRGPRGG 321

Query: 241 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 300
           MIFF+KDPVLGV+LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKV++N
Sbjct: 322 MIFFRKDPVLGVDLESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVIAN 381

Query: 301 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKS 360
           CRALA+RLVELGYKLVSGGSDNHLVLVDLRP+GIDGARVEKILDMASITLNKNSVPGDKS
Sbjct: 382 CRALANRLVELGYKLVSGGSDNHLVLVDLRPLGIDGARVEKILDMASITLNKNSVPGDKS 441

Query: 361 ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSP 420
           ALVPGGIRIGSPAMTTRGF+EKEFVA+ADFIHEGV+ITL+AK L  GSKLQ+F+ FVT+ 
Sbjct: 442 ALVPGGIRIGSPAMTTRGFTEKEFVAVADFIHEGVKITLDAKPLAPGSKLQEFLKFVTTS 501

Query: 421 NFSLMNNVADLRGRVEALTTQFPIPGV 447
           +F L + ++DLR RVEALTTQFPIPG+
Sbjct: 502 DFPLTDRISDLRSRVEALTTQFPIPGL 528

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092216|ref|XP_002309513.1| serine hydroxymethyltransferase 8 [Populus trichocarpa] gi|222855489|gb|EEE93036.1| serine hydroxymethyltransferase 8 [Populus trichocarpa]

 Score =  839 bits (2168), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/444 (89%), Positives = 423/444 (95%)

Query: 4   CNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEY 63
            +PEV EII KEK+RQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEY
Sbjct: 86  ADPEVLEIINKEKDRQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEY 145

Query: 64  IDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGH 123
           IDELETLCQKRALA+FNLD  KWGVNVQPLSGSPANFEVYTA+LKPHDRIMGLDLPHGGH
Sbjct: 146 IDELETLCQKRALASFNLDGKKWGVNVQPLSGSPANFEVYTALLKPHDRIMGLDLPHGGH 205

Query: 124 LSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRD 183
           LSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRD
Sbjct: 206 LSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRD 265

Query: 184 FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIF 243
           FDYPRMR+IADAVGA LMMDMAHISGLVAASVVADPF+YCDVVTTTTHKSLRGPRGGMIF
Sbjct: 266 FDYPRMRKIADAVGAFLMMDMAHISGLVAASVVADPFEYCDVVTTTTHKSLRGPRGGMIF 325

Query: 244 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRA 303
           FKKDPVLGV++ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK YQ +V+ N RA
Sbjct: 326 FKKDPVLGVDMESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKAYQKQVICNSRA 385

Query: 304 LASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALV 363
           LA+R+VELGYKLVSGGSDNHL+LVDLRP+G+DGARVEKILDMASITLNKNSVPGDKSALV
Sbjct: 386 LANRMVELGYKLVSGGSDNHLILVDLRPLGLDGARVEKILDMASITLNKNSVPGDKSALV 445

Query: 364 PGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFS 423
           PGGIRIGSPAMTTRGF+E EFVA AD IHEGV+I+LEAKK V GSKLQDF+ FV SP+F 
Sbjct: 446 PGGIRIGSPAMTTRGFTETEFVATADLIHEGVQISLEAKKSVSGSKLQDFLKFVKSPDFP 505

Query: 424 LMNNVADLRGRVEALTTQFPIPGV 447
           L + V+DL+ RVEALTTQFPIPG+
Sbjct: 506 LTDKVSDLQRRVEALTTQFPIPGL 529

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|134142079|gb|ABO61383.1| plastid serine hydroxymethyltransferase [Populus tremuloides]

 Score =  839 bits (2167), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/447 (89%), Positives = 424/447 (94%)

Query: 1   MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 60
           +   +PEV EII KEK+RQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG
Sbjct: 83  LSEADPEVLEIIKKEKDRQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142

Query: 61  NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 120
           NEYIDELETLCQKRALA+FNLD  KWGVNVQPLSGSPANFEVYTA+LKPHDRIMGLDLPH
Sbjct: 143 NEYIDELETLCQKRALASFNLDGKKWGVNVQPLSGSPANFEVYTALLKPHDRIMGLDLPH 202

Query: 121 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 180
           GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY
Sbjct: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262

Query: 181 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 240
           PRDFDYPRMR+IADAVGA LMMDMAHISGLV ASVVADPF+YCDVVTTTTHKSLRGPRGG
Sbjct: 263 PRDFDYPRMRKIADAVGAFLMMDMAHISGLVPASVVADPFEYCDVVTTTTHKSLRGPRGG 322

Query: 241 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 300
           MIFFKKDPVLGV++ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK YQ +V+ N
Sbjct: 323 MIFFKKDPVLGVDMESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKAYQKQVICN 382

Query: 301 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKS 360
            RALA+R+VELGYKLVSGGSDNHL+LVDLRP+G+DGARVEKILD+ASITLNKNSVPGDKS
Sbjct: 383 SRALANRMVELGYKLVSGGSDNHLILVDLRPLGLDGARVEKILDIASITLNKNSVPGDKS 442

Query: 361 ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSP 420
           ALVPGGIRIGSPAMTTRGF+E+EFVA AD IHEGV+I+LEAKK V GSKLQDF+ FV SP
Sbjct: 443 ALVPGGIRIGSPAMTTRGFTEREFVATADLIHEGVQISLEAKKSVSGSKLQDFLKFVKSP 502

Query: 421 NFSLMNNVADLRGRVEALTTQFPIPGV 447
           +F L + V+DLR RVEALTTQFPIPG+
Sbjct: 503 DFPLTDKVSDLRRRVEALTTQFPIPGL 529

Source: Populus tremuloides

Species: Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429452|ref|XP_002277146.1| PREDICTED: serine hydroxymethyltransferase, mitochondrial [Vitis vinifera] gi|296081614|emb|CBI20619.3| unnamed protein product [Vitis vinifera]

 Score =  834 bits (2154), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/447 (88%), Positives = 422/447 (94%)

Query: 1   MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 60
           +   +PEVC II KEK+RQ KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG
Sbjct: 82  LNEADPEVCAIIYKEKQRQMKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 141

Query: 61  NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 120
           NE+IDELETLCQKRALAAF+LD  KWGVNVQPLSGSPANFEVYTA+L PHDRIMGLDLPH
Sbjct: 142 NEFIDELETLCQKRALAAFHLDGKKWGVNVQPLSGSPANFEVYTALLNPHDRIMGLDLPH 201

Query: 121 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 180
           GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTA LFRPKLIIAGASAY
Sbjct: 202 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTANLFRPKLIIAGASAY 261

Query: 181 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 240
           PRDFDYPRMR+IAD VGA LMMDMAHISGLVAASVVADPF+YCD+VTTTTHKSLRGPRGG
Sbjct: 262 PRDFDYPRMRKIADGVGAFLMMDMAHISGLVAASVVADPFEYCDIVTTTTHKSLRGPRGG 321

Query: 241 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 300
           MIFFKKD VLGV+LESAINNAVFPGLQGGPHNHTIGGL+VCLKHAQSPEFK YQN+VVSN
Sbjct: 322 MIFFKKDSVLGVDLESAINNAVFPGLQGGPHNHTIGGLSVCLKHAQSPEFKAYQNQVVSN 381

Query: 301 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKS 360
           CRALA RL+ELGY LVSGGSDNHL+LVDLRP+GIDGAR EKILDMASITLNKNSVPGDKS
Sbjct: 382 CRALAGRLIELGYNLVSGGSDNHLILVDLRPLGIDGARAEKILDMASITLNKNSVPGDKS 441

Query: 361 ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSP 420
           ALVPGGIRIGSPAMTTRGFSEKEF+A ADFIHEGV+++LEAKK V GSKL DFM FVTSP
Sbjct: 442 ALVPGGIRIGSPAMTTRGFSEKEFIATADFIHEGVQLSLEAKKSVSGSKLLDFMKFVTSP 501

Query: 421 NFSLMNNVADLRGRVEALTTQFPIPGV 447
           +FSL++ V+DL+ RVE LTTQFP+PG+
Sbjct: 502 DFSLIDRVSDLQRRVETLTTQFPMPGL 528

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557552|ref|XP_002519806.1| serine hydroxymethyltransferase, putative [Ricinus communis] gi|223541045|gb|EEF42602.1| serine hydroxymethyltransferase, putative [Ricinus communis]

 Score =  828 bits (2139), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/447 (88%), Positives = 418/447 (93%)

Query: 1   MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 60
           +   +PEV EII KEK RQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG
Sbjct: 81  LSEADPEVREIIEKEKNRQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 140

Query: 61  NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 120
           NE+IDELETLCQ+RALAAF LD  KWGVNVQPLSGSPANFEVYTA+L PHDRIMGLDLPH
Sbjct: 141 NEHIDELETLCQERALAAFGLDRKKWGVNVQPLSGSPANFEVYTALLNPHDRIMGLDLPH 200

Query: 121 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 180
           GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTA LFRPKLIIAGASAY
Sbjct: 201 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTANLFRPKLIIAGASAY 260

Query: 181 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 240
           PRDFDYPRMR+IADAVGA LMMDMAHISGLVAASVV DPF+YCD+VTTTTHKSLRGPRGG
Sbjct: 261 PRDFDYPRMRKIADAVGAFLMMDMAHISGLVAASVVGDPFEYCDIVTTTTHKSLRGPRGG 320

Query: 241 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 300
           MIFF+KD +LGV+LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK YQ +V+SN
Sbjct: 321 MIFFRKDTILGVDLESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKAYQKQVISN 380

Query: 301 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKS 360
           CRALA RLVELGYKLVSGGSDNHLVLVDLRP+GIDGARVEKILDMASITLNKNSVPGDKS
Sbjct: 381 CRALAYRLVELGYKLVSGGSDNHLVLVDLRPLGIDGARVEKILDMASITLNKNSVPGDKS 440

Query: 361 ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSP 420
           ALVPGGIRIGSPAMTTRGF+E+EF+A ADFIHEGV+IT EAKK V GSKLQDFM  V SP
Sbjct: 441 ALVPGGIRIGSPAMTTRGFTEREFIATADFIHEGVQITTEAKKSVSGSKLQDFMKLVASP 500

Query: 421 NFSLMNNVADLRGRVEALTTQFPIPGV 447
           +FSL + V+DL+ RVEAL TQF IPGV
Sbjct: 501 DFSLASEVSDLQTRVEALATQFSIPGV 527

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18418028|ref|NP_567895.1| serine hydroxymethyltransferase 3 [Arabidopsis thaliana] gi|186515561|ref|NP_001119098.1| serine hydroxymethyltransferase 3 [Arabidopsis thaliana] gi|332660671|gb|AEE86071.1| serine hydroxymethyltransferase 3 [Arabidopsis thaliana] gi|332660672|gb|AEE86072.1| serine hydroxymethyltransferase 3 [Arabidopsis thaliana]

 Score =  812 bits (2097), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/443 (87%), Positives = 410/443 (92%)

Query: 5   NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
           +PEV  IITKEK+RQF+SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI
Sbjct: 87  DPEVRTIITKEKDRQFRSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 146

Query: 65  DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
           D+LETLCQ RALAAF LD  KWGVNVQPLSGSPANF VYTAIL PHDRIMGLDLPHGGHL
Sbjct: 147 DQLETLCQNRALAAFRLDSTKWGVNVQPLSGSPANFAVYTAILSPHDRIMGLDLPHGGHL 206

Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
           SHGFMT KRRVSGTSIYFESMPYRLDESTG+VDYDMLEKTA LFRPKLIIAGASAY RDF
Sbjct: 207 SHGFMTAKRRVSGTSIYFESMPYRLDESTGIVDYDMLEKTATLFRPKLIIAGASAYSRDF 266

Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
           DYPRMR+IAD+VGA LMMDMAHISGLVAASVVADPF+YCD+VTTTTHKSLRGPRGGMIFF
Sbjct: 267 DYPRMRKIADSVGAFLMMDMAHISGLVAASVVADPFEYCDIVTTTTHKSLRGPRGGMIFF 326

Query: 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
           +KDP+ GV+LESA+NNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK YQ +VVSNCRAL
Sbjct: 327 RKDPINGVDLESAVNNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKAYQKRVVSNCRAL 386

Query: 305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVP 364
           A+RLVELG+KLVSGGSDNHLVLVDLRPMG+DGARVEKILDMASITLNKNSVPGDKSALVP
Sbjct: 387 ANRLVELGFKLVSGGSDNHLVLVDLRPMGMDGARVEKILDMASITLNKNSVPGDKSALVP 446

Query: 365 GGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSL 424
           GGIRIGSPAMTTRG SEK+FV +ADFI EGVEIT+EAKK   GSKLQDF  FVTSP F L
Sbjct: 447 GGIRIGSPAMTTRGLSEKDFVVVADFIKEGVEITMEAKKAAPGSKLQDFNKFVTSPEFPL 506

Query: 425 MNNVADLRGRVEALTTQFPIPGV 447
              V  L+ RVE  T++FPIPGV
Sbjct: 507 KERVKSLKERVETFTSRFPIPGV 529

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4049354|emb|CAA22579.1| glycine hydroxymethyltransferase (EC 2.1.2.1)-like protein [Arabidopsis thaliana] gi|7270156|emb|CAB79969.1| glycine hydroxymethyltransferase (EC 2.1.2.1)-like protein [Arabidopsis thaliana]

 Score =  811 bits (2096), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/443 (87%), Positives = 410/443 (92%)

Query: 5   NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
           +PEV  IITKEK+RQF+SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI
Sbjct: 20  DPEVRTIITKEKDRQFRSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 79

Query: 65  DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
           D+LETLCQ RALAAF LD  KWGVNVQPLSGSPANF VYTAIL PHDRIMGLDLPHGGHL
Sbjct: 80  DQLETLCQNRALAAFRLDSTKWGVNVQPLSGSPANFAVYTAILSPHDRIMGLDLPHGGHL 139

Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
           SHGFMT KRRVSGTSIYFESMPYRLDESTG+VDYDMLEKTA LFRPKLIIAGASAY RDF
Sbjct: 140 SHGFMTAKRRVSGTSIYFESMPYRLDESTGIVDYDMLEKTATLFRPKLIIAGASAYSRDF 199

Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
           DYPRMR+IAD+VGA LMMDMAHISGLVAASVVADPF+YCD+VTTTTHKSLRGPRGGMIFF
Sbjct: 200 DYPRMRKIADSVGAFLMMDMAHISGLVAASVVADPFEYCDIVTTTTHKSLRGPRGGMIFF 259

Query: 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
           +KDP+ GV+LESA+NNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK YQ +VVSNCRAL
Sbjct: 260 RKDPINGVDLESAVNNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKAYQKRVVSNCRAL 319

Query: 305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVP 364
           A+RLVELG+KLVSGGSDNHLVLVDLRPMG+DGARVEKILDMASITLNKNSVPGDKSALVP
Sbjct: 320 ANRLVELGFKLVSGGSDNHLVLVDLRPMGMDGARVEKILDMASITLNKNSVPGDKSALVP 379

Query: 365 GGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSL 424
           GGIRIGSPAMTTRG SEK+FV +ADFI EGVEIT+EAKK   GSKLQDF  FVTSP F L
Sbjct: 380 GGIRIGSPAMTTRGLSEKDFVVVADFIKEGVEITMEAKKAAPGSKLQDFNKFVTSPEFPL 439

Query: 425 MNNVADLRGRVEALTTQFPIPGV 447
              V  L+ RVE  T++FPIPGV
Sbjct: 440 KERVKSLKERVETFTSRFPIPGV 462

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14030719|gb|AAK53034.1|AF375450_1 AT4g32520/F8B4_220 [Arabidopsis thaliana] gi|23308475|gb|AAN18207.1| At4g32520/F8B4_220 [Arabidopsis thaliana]

 Score =  811 bits (2095), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/443 (87%), Positives = 409/443 (92%)

Query: 5   NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
           +PEV  IITKEK+RQF+SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI
Sbjct: 87  DPEVRTIITKEKDRQFRSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 146

Query: 65  DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
           D+LETLCQ RALAAF LD  KWGVNVQPLSGSPANF VYTAIL PHDRIMGLDLPHGGHL
Sbjct: 147 DQLETLCQNRALAAFRLDSTKWGVNVQPLSGSPANFAVYTAILSPHDRIMGLDLPHGGHL 206

Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
           SHGFMT KRRVSGTSIYFESMPYRLDESTG+VDYDMLEKTA LFRPKLIIAGASAY RDF
Sbjct: 207 SHGFMTAKRRVSGTSIYFESMPYRLDESTGIVDYDMLEKTATLFRPKLIIAGASAYSRDF 266

Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
           DYPRMR+IAD+VGA LMMDMAHISGLVAASVVADPF+YCD+VTTTTHKSLRGPRGGMIFF
Sbjct: 267 DYPRMRKIADSVGAFLMMDMAHISGLVAASVVADPFEYCDIVTTTTHKSLRGPRGGMIFF 326

Query: 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
           +KDP+ GV+LESA+NNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK YQ +VVSNCRAL
Sbjct: 327 RKDPINGVDLESAVNNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKAYQKRVVSNCRAL 386

Query: 305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVP 364
           A+RLVELG+KLVSGGSDNHLVLVDLRPMG+DGARVEKILDMASITLNKNSVPGDKSALVP
Sbjct: 387 ANRLVELGFKLVSGGSDNHLVLVDLRPMGMDGARVEKILDMASITLNKNSVPGDKSALVP 446

Query: 365 GGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSL 424
           GGIRIGSPAMTTRG SEK+FV +ADFI EGVEIT+EAKK   GSKLQDF  FVTSP F L
Sbjct: 447 GGIRIGSPAMTTRGLSEKDFVVVADFIKEGVEITMEAKKAAPGSKLQDFNKFVTSPEFPL 506

Query: 425 MNNVADLRGRVEALTTQFPIPGV 447
              V  L  RVE  T++FPIPGV
Sbjct: 507 KERVKSLTERVETFTSRFPIPGV 529

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798710|ref|XP_002867239.1| hypothetical protein ARALYDRAFT_491471 [Arabidopsis lyrata subsp. lyrata] gi|297313075|gb|EFH43498.1| hypothetical protein ARALYDRAFT_491471 [Arabidopsis lyrata subsp. lyrata]

 Score =  804 bits (2077), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/444 (86%), Positives = 411/444 (92%), Gaps = 1/444 (0%)

Query: 5   NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
           +PEV  IITKEK+RQF+SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI
Sbjct: 87  DPEVRTIITKEKDRQFRSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 146

Query: 65  DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
           D+LETLCQ RALAAF LD  KWGVNVQPLSGSPANF VYTAIL PHDRIMGLDLPHGGHL
Sbjct: 147 DQLETLCQNRALAAFRLDSTKWGVNVQPLSGSPANFAVYTAILSPHDRIMGLDLPHGGHL 206

Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
           SHGFMT KRRVSGTSIYFESMPYRLDESTG+VDYDMLEKTA LFRPKLIIAGASAY RDF
Sbjct: 207 SHGFMTAKRRVSGTSIYFESMPYRLDESTGIVDYDMLEKTATLFRPKLIIAGASAYSRDF 266

Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
           DYPR+R+IAD++GA LMMDMAHISGLVAASVVADPF+YCD+VTTTTHKSLRGPRGGMIFF
Sbjct: 267 DYPRLRKIADSIGAFLMMDMAHISGLVAASVVADPFEYCDIVTTTTHKSLRGPRGGMIFF 326

Query: 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
           +KDP+ GV+LESA+NNAVFPGLQGGPHNHTIGGLAVCLKHAQS EFK YQ +VVSNCRAL
Sbjct: 327 RKDPINGVDLESAVNNAVFPGLQGGPHNHTIGGLAVCLKHAQSLEFKAYQKRVVSNCRAL 386

Query: 305 ASRLVELGYKLVSGGSDNHLVLVDLRPM-GIDGARVEKILDMASITLNKNSVPGDKSALV 363
           A+RLVELG+KLVSGGSDNHLVLVDLRPM  +DGARVEKILDMASITLNKNSVPGDKSALV
Sbjct: 387 ANRLVELGFKLVSGGSDNHLVLVDLRPMVSMDGARVEKILDMASITLNKNSVPGDKSALV 446

Query: 364 PGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFS 423
           PGGIRIGSPAMTTRG SEK+FVA+ADFI EGVEIT+EAKK   GSKLQDF  FVTSP+F 
Sbjct: 447 PGGIRIGSPAMTTRGLSEKDFVAVADFIKEGVEITMEAKKATPGSKLQDFTKFVTSPDFP 506

Query: 424 LMNNVADLRGRVEALTTQFPIPGV 447
           L+  V  L+ RVE+ T+ FPIPGV
Sbjct: 507 LIEKVKSLKERVESFTSHFPIPGV 530

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724373|ref|NP_001238335.1| serine hydroxymethyltransferase 4 [Glycine max] gi|222142535|gb|ACM45954.1| serine hydroxymethyltransferase 4 [Glycine max]

 Score =  790 bits (2041), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/456 (83%), Positives = 412/456 (90%), Gaps = 9/456 (1%)

Query: 1   MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 60
           +   +P+V  II KEK+RQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG
Sbjct: 81  LSEADPDVRAIIDKEKDRQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 140

Query: 61  NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 120
           NEYIDELE LCQ+RALAAF++DENKWGVNVQ LSGSPANF VYTA+LKPHDRIMGLDLPH
Sbjct: 141 NEYIDELEILCQQRALAAFHVDENKWGVNVQTLSGSPANFAVYTAVLKPHDRIMGLDLPH 200

Query: 121 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 180
           GGHLSHGFMTPK+RVS TSIYFESMPYRLDESTGL+DYDMLEKTA LFRPKLI+AGASAY
Sbjct: 201 GGHLSHGFMTPKKRVSATSIYFESMPYRLDESTGLIDYDMLEKTATLFRPKLIVAGASAY 260

Query: 181 PRDFDYPRMRQ---------IADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTH 231
           PRD DYPRMR+         IAD VGA LMMDMAHISGLVAASV+++PF+YCD+VTTTTH
Sbjct: 261 PRDIDYPRMRKLITSYMHGKIADEVGAFLMMDMAHISGLVAASVLSNPFEYCDIVTTTTH 320

Query: 232 KSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 291
           KSLRGPRGGMIFFKKD V GV+LE AINNAVFPGLQGGPHNHTIGGLAVCLK+AQSPEFK
Sbjct: 321 KSLRGPRGGMIFFKKDTVHGVDLEPAINNAVFPGLQGGPHNHTIGGLAVCLKYAQSPEFK 380

Query: 292 VYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 351
            YQN+VV+NCRALA RL+E GYKLVSGGSDNHLVLVDLRP G+DGARVEKILD+ASITLN
Sbjct: 381 NYQNQVVANCRALAKRLIEHGYKLVSGGSDNHLVLVDLRPSGLDGARVEKILDLASITLN 440

Query: 352 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQ 411
           KNSVPGDKSALVPGGIRIG+PAMTTRG  EKEF  IADFIHEGV+I+LEAK LV G+KLQ
Sbjct: 441 KNSVPGDKSALVPGGIRIGAPAMTTRGLGEKEFSLIADFIHEGVQISLEAKSLVSGTKLQ 500

Query: 412 DFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 447
           DF+ FVTS  F L   V++LR +VEALTTQ+PIPGV
Sbjct: 501 DFLKFVTSSEFPLGEKVSELRRKVEALTTQYPIPGV 536

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	447
TAIR|locus:2127806	529	SHM3 "serine hydroxymethyltran	0.991	0.837	0.873	1.9e-209
TAIR|locus:2005518	517	SHM1 "serine transhydroxymethy	0.995	0.860	0.618	6.9e-150
RGD|1312011	681	Shmt1 "serine hydroxymethyltra	0.997	0.654	0.608	2.2e-146
UNIPROTKB|P34896	483	SHMT1 "Serine hydroxymethyltra	0.982	0.908	0.614	3.2e-145
UNIPROTKB|Q5E9P9	484	SHMT1 "Serine hydroxymethyltra	0.982	0.907	0.612	4e-145
UNIPROTKB|E2RIV3	484	SHMT1 "Uncharacterized protein	0.984	0.909	0.605	8.4e-145
UNIPROTKB|E1BS67	486	SHMT1 "Uncharacterized protein	0.986	0.907	0.599	1.1e-144
MGI|MGI:98299	478	Shmt1 "serine hydroxymethyltra	0.984	0.920	0.607	2.2e-144
UNIPROTKB|Q3SZ20	504	SHMT2 "Serine hydroxymethyltra	0.979	0.869	0.599	9.6e-144
UNIPROTKB|P34897	504	SHMT2 "Serine hydroxymethyltra	0.982	0.871	0.600	9.6e-144

TAIR|locus:2127806 SHM3 "serine hydroxymethyltransferase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 2025 (717.9 bits), Expect = 1.9e-209, P = 1.9e-209
 Identities = 387/443 (87%), Positives = 410/443 (92%)

Query:     5 NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
             +PEV  IITKEK+RQF+SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI
Sbjct:    87 DPEVRTIITKEKDRQFRSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 146

Query:    65 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
             D+LETLCQ RALAAF LD  KWGVNVQPLSGSPANF VYTAIL PHDRIMGLDLPHGGHL
Sbjct:   147 DQLETLCQNRALAAFRLDSTKWGVNVQPLSGSPANFAVYTAILSPHDRIMGLDLPHGGHL 206

Query:   125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
             SHGFMT KRRVSGTSIYFESMPYRLDESTG+VDYDMLEKTA LFRPKLIIAGASAY RDF
Sbjct:   207 SHGFMTAKRRVSGTSIYFESMPYRLDESTGIVDYDMLEKTATLFRPKLIIAGASAYSRDF 266

Query:   185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
             DYPRMR+IAD+VGA LMMDMAHISGLVAASVVADPF+YCD+VTTTTHKSLRGPRGGMIFF
Sbjct:   267 DYPRMRKIADSVGAFLMMDMAHISGLVAASVVADPFEYCDIVTTTTHKSLRGPRGGMIFF 326

Query:   245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
             +KDP+ GV+LESA+NNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK YQ +VVSNCRAL
Sbjct:   327 RKDPINGVDLESAVNNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKAYQKRVVSNCRAL 386

Query:   305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVP 364
             A+RLVELG+KLVSGGSDNHLVLVDLRPMG+DGARVEKILDMASITLNKNSVPGDKSALVP
Sbjct:   387 ANRLVELGFKLVSGGSDNHLVLVDLRPMGMDGARVEKILDMASITLNKNSVPGDKSALVP 446

Query:   365 GGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSL 424
             GGIRIGSPAMTTRG SEK+FV +ADFI EGVEIT+EAKK   GSKLQDF  FVTSP F L
Sbjct:   447 GGIRIGSPAMTTRGLSEKDFVVVADFIKEGVEITMEAKKAAPGSKLQDFNKFVTSPEFPL 506

Query:   425 MNNVADLRGRVEALTTQFPIPGV 447
                V  L+ RVE  T++FPIPGV
Sbjct:   507 KERVKSLKERVETFTSRFPIPGV 529

GO:0003824 "catalytic activity" evidence=IEA

GO:0004372 "glycine hydroxymethyltransferase activity" evidence=IEA;ISS;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006544 "glycine metabolic process" evidence=IEA;ISS

GO:0006563 "L-serine metabolic process" evidence=IEA;ISS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006164 "purine nucleotide biosynthetic process" evidence=RCA

TAIR|locus:2005518 SHM1 "serine transhydroxymethyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1463 (520.1 bits), Expect = 6.9e-150, P = 6.9e-150
 Identities = 281/454 (61%), Positives = 349/454 (76%)

Query:     1 MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 60
             ++  +PE+ +II  EK RQ+K LELI SENFTS +VM+AVGS +TNKYSEG PG RYYGG
Sbjct:    55 LEEVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGG 114

Query:    61 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 120
             NEYID  ETLCQKRAL AF LD  KWGVNVQPLSGSPANF VYTA+LKPH+RIM LDLPH
Sbjct:   115 NEYIDMAETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFHVYTALLKPHERIMALDLPH 174

Query:   121 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 180
             GGHLSHG+ T  +++S  SI+FE+MPYRLDESTG +DYD +EK+A LFRPKLI+AGASAY
Sbjct:   175 GGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQMEKSATLFRPKLIVAGASAY 234

Query:   181 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 240
              R +DY R+R++ +   A+++ DMAHISGLVAA+V+  PF Y DVVTTTTHKSLRGPRG 
Sbjct:   235 ARLYDYARIRKVCNKQKAVMLADMAHISGLVAANVIPSPFDYADVVTTTTHKSLRGPRGA 294

Query:   241 MIFFKKDPV----LGVEL----ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKV 292
             MIFF+K        G E+    E  IN AVFPGLQGGPHNHTI GLAV LK A + E+K 
Sbjct:   295 MIFFRKGVKEINKQGKEVLYDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATTSEYKA 354

Query:   293 YQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNK 352
             YQ +V+SN    A  L+E GY+LVSGG+DNHLVLV+L+P GIDG+RVEK+L+   I  NK
Sbjct:   355 YQEQVLSNSAKFAQTLMERGYELVSGGTDNHLVLVNLKPKGIDGSRVEKVLEAVHIASNK 414

Query:   353 NSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQD 412
             N+VPGD SA+VPGGIR+G+PA+T+RGF E++F  +A++  + V I L+ K   QG+KL+D
Sbjct:   415 NTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKD 474

Query:   413 FMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 446
             F++ + S + ++ + +A LR  VE    QFP  G
Sbjct:   475 FVSAMESSS-TIQSEIAKLRHEVEEFAKQFPTIG 507

GO:0003824 "catalytic activity" evidence=IEA

GO:0004372 "glycine hydroxymethyltransferase activity" evidence=IEA;ISS;TAS

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006544 "glycine metabolic process" evidence=IEA;ISS

GO:0006563 "L-serine metabolic process" evidence=IEA;ISS

GO:0019464 "glycine decarboxylation via glycine cleavage system" evidence=IMP

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=TAS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0010319 "stromule" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009853 "photorespiration" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0008266 "poly(U) RNA binding" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

RGD|1312011 Shmt1 "serine hydroxymethyltransferase 1 (soluble)" [Rattus norvegicus (taxid:10116)]

 Score = 1430 (508.4 bits), Expect = 2.2e-146, P = 2.2e-146
 Identities = 278/457 (60%), Positives = 343/457 (75%)

Query:     1 MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 60
             ++  + EV  II KE  RQ   LELIASENF SRAV+EA+GSCL NKYSEG PG+RYYGG
Sbjct:   223 LKESDAEVYSIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGG 282

Query:    61 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 120
              E+IDELETLCQKRAL A++LD   WGVNVQP SGSPANF VYTA+++PH RIMGLDLP 
Sbjct:   283 TEFIDELETLCQKRALQAYHLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 342

Query:   121 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 180
             GGHL+HGFMT K+++S TSI+FESMPY++   TG ++YD LE+ A LF PKLIIAG S Y
Sbjct:   343 GGHLTHGFMTDKKKISATSIFFESMPYKVYPDTGYINYDQLEENASLFHPKLIIAGTSCY 402

Query:   181 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 240
              R+ DY R+R+IAD  GA LM DMAHISGLVAA VV  PF++C VVTTTTHK+LRG R G
Sbjct:   403 SRNLDYARLRKIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAG 462

Query:   241 MIFFKK-----DPVLG----VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 291
             MIF++K     DP  G     ELES IN+AVFPGLQGGPHNH I G+AV LK A + EFK
Sbjct:   463 MIFYRKGVRSVDPKTGEETYYELESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTTEFK 522

Query:   292 VYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 351
             +YQ +V++NCRAL+  L ELGYK+V+GGSDNHL+L+DLRP G DG R EK+L+  SI  N
Sbjct:   523 IYQLQVLANCRALSDALTELGYKIVTGGSDNHLILMDLRPKGTDGGRAEKVLEACSIACN 582

Query:   352 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKK-LVQGSKL 410
             KN+ PGDKSAL P G+R+G+PA+T+RG  E++F  IA FIH G+E+TL+ +  +   + L
Sbjct:   583 KNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKIAHFIHRGIELTLQIQSHMTMRATL 642

Query:   411 QDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 447
             ++F   +T       + VA LR  VE   + F +PG+
Sbjct:   643 KEFKEKLTGDE-KFQSAVAALREEVENFASNFSLPGL 678

GO:0004372 "glycine hydroxymethyltransferase activity" evidence=ISO;IDA;TAS

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=ISO;IDA;TAS

GO:0006544 "glycine metabolic process" evidence=IDA;TAS

GO:0006545 "glycine biosynthetic process" evidence=IDA

GO:0006563 "L-serine metabolic process" evidence=TAS

GO:0006565 "L-serine catabolic process" evidence=IEA;ISO

GO:0008732 "L-allo-threonine aldolase activity" evidence=IDA

GO:0009113 "purine nucleobase biosynthetic process" evidence=IEA;ISO

GO:0016597 "amino acid binding" evidence=IPI

GO:0019264 "glycine biosynthetic process from serine" evidence=IDA

GO:0030170 "pyridoxal phosphate binding" evidence=ISO;IDA;TAS

GO:0035999 "tetrahydrofolate interconversion" evidence=IEA

GO:0042802 "identical protein binding" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0046655 "folic acid metabolic process" evidence=IEA;ISO

GO:0051262 "protein tetramerization" evidence=ISO

GO:0051289 "protein homotetramerization" evidence=IDA

UNIPROTKB|P34896 SHMT1 "Serine hydroxymethyltransferase, cytosolic" [Homo sapiens (taxid:9606)]

 Score = 1419 (504.6 bits), Expect = 3.2e-145, P = 3.2e-145
 Identities = 277/451 (61%), Positives = 339/451 (75%)

Query:     7 EVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDE 66
             EV  II KE  RQ   LELIASENF SRAV+EA+GSCL NKYSEG PG+RYYGG E+IDE
Sbjct:    32 EVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDE 91

Query:    67 LETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSH 126
             LETLCQKRAL A+ LD   WGVNVQP SGSPANF VYTA+++PH RIMGLDLP GGHL+H
Sbjct:    92 LETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTH 151

Query:   127 GFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDY 186
             GFMT K+++S TSI+FESMPY+++  TG ++YD LE+ A LF PKLIIAG S Y R+ +Y
Sbjct:   152 GFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAGTSCYSRNLEY 211

Query:   187 PRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKK 246
              R+R+IAD  GA LM DMAHISGLVAA VV  PF++C VVTTTTHK+LRG R GMIF++K
Sbjct:   212 ARLRKIADENGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRK 271

Query:   247 -----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKV 297
                  DP  G E    LES IN+AVFPGLQGGPHNH I G+AV LK A + EFKVYQ++V
Sbjct:   272 GVKSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFKVYQHQV 331

Query:   298 VSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPG 357
             V+NCRAL+  L ELGYK+V+GGSDNHL+LVDLR  G DG R EK+L+  SI  NKN+ PG
Sbjct:   332 VANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPG 391

Query:   358 DKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQ-GSKLQDFMNF 416
             D+SAL P G+R+G+PA+T+RG  EK+F  +A FIH G+E+TL+ +      + L++F   
Sbjct:   392 DRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKER 451

Query:   417 VTSPNFSLMNNVADLRGRVEALTTQFPIPGV 447
             +    +     V  LR  VE+  + FP+PG+
Sbjct:   452 LAGDKYQAA--VQALREEVESFASLFPLPGL 480

GO:0005739 "mitochondrion" evidence=IEA

GO:0008732 "L-allo-threonine aldolase activity" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0019264 "glycine biosynthetic process from serine" evidence=IEA

GO:0051289 "protein homotetramerization" evidence=IEA

GO:0035999 "tetrahydrofolate interconversion" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0051262 "protein tetramerization" evidence=IDA

GO:0046655 "folic acid metabolic process" evidence=IDA;TAS

GO:0030170 "pyridoxal phosphate binding" evidence=IDA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0004372 "glycine hydroxymethyltransferase activity" evidence=IDA;TAS

GO:0006565 "L-serine catabolic process" evidence=IDA

GO:0009113 "purine nucleobase biosynthetic process" evidence=IDA

GO:0006766 "vitamin metabolic process" evidence=TAS

GO:0006767 "water-soluble vitamin metabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0045329 "carnitine biosynthetic process" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q5E9P9 SHMT1 "Serine hydroxymethyltransferase, cytosolic" [Bos taurus (taxid:9913)]

 Score = 1418 (504.2 bits), Expect = 4.0e-145, P = 4.0e-145
 Identities = 277/452 (61%), Positives = 339/452 (75%)

Query:     7 EVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDE 66
             EV  II KE  RQ   LELIASENF SRAV+EA+GSCL NKYSEG PG+RYYGG E+IDE
Sbjct:    32 EVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDE 91

Query:    67 LETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSH 126
             LE LCQKRAL  + LD   WGVNVQP SGSPANF VYTA+++PH RIMGLDLP GGHL+H
Sbjct:    92 LEVLCQKRALQVYGLDSQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTH 151

Query:   127 GFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDY 186
             GFMT K+++S TSI+FESMPY+++  TG ++YD LE+ A LF P+LIIAG S Y R+ DY
Sbjct:   152 GFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPRLIIAGTSCYSRNLDY 211

Query:   187 PRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKK 246
              R+R+IAD  GA LM DMAH+SGLVAA VV  PF++C VV+TTTHK+LRG R GMIF++K
Sbjct:   212 ARLRKIADDNGAYLMADMAHVSGLVAAGVVPSPFEHCHVVSTTTHKTLRGCRAGMIFYRK 271

Query:   247 -----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKV 297
                  DP  G E    LES IN+AVFPGLQGGPHNH I G+AV LK A +PEF+ YQ +V
Sbjct:   272 GVRSVDPKTGRETRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFRAYQRQV 331

Query:   298 VSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPG 357
             V+NCRALA  L+ LGY++V+GGSDNHL+LVDLR  G DG R EK+L+  SI  NKN+ PG
Sbjct:   332 VANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPG 391

Query:   358 DKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSK--LQDFMN 415
             DKSAL P G+R+G+PA+T+RG  E++F  +A FIH G+E+TL+ +  V G K  L++FM 
Sbjct:   392 DKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQDAV-GVKATLKEFME 450

Query:   416 FVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 447
              +          VA LR  VE+  T FP+PG+
Sbjct:   451 KLAGAE-EHHRAVAALRAEVESFATLFPLPGL 481

GO:0035999 "tetrahydrofolate interconversion" evidence=IEA

GO:0051262 "protein tetramerization" evidence=IEA

GO:0046655 "folic acid metabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0009113 "purine nucleobase biosynthetic process" evidence=IEA

GO:0006565 "L-serine catabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004372 "glycine hydroxymethyltransferase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006544 "glycine metabolic process" evidence=IEA

UNIPROTKB|E2RIV3 SHMT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1415 (503.2 bits), Expect = 8.4e-145, P = 8.4e-145
 Identities = 273/451 (60%), Positives = 339/451 (75%)

Query:     7 EVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDE 66
             EV  II KE  RQ   LELIASENFTSRAV+EA+GSCL NKYSEG PG+RYYGG E+IDE
Sbjct:    32 EVYNIIKKESNRQRVGLELIASENFTSRAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDE 91

Query:    67 LETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSH 126
             LE LCQKRAL  + LD   WGVNVQP SGSPANF VYTA+++PH RIMGLDLP GGHL+H
Sbjct:    92 LEILCQKRALQVYGLDPECWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTH 151

Query:   127 GFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDY 186
             GFMT K+++S TSI+FESMPY+++  TG ++YD LE+ A LF PKLIIAG S Y R+ DY
Sbjct:   152 GFMTDKKKISATSIFFESMPYKVNPETGYINYDQLEENARLFHPKLIIAGTSCYSRNLDY 211

Query:   187 PRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKK 246
              R+R+IAD  GA LM DMAHISGLVAA VV  PF++C VV+TTTHK+LRG R G+IF+++
Sbjct:   212 ARLRKIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVSTTTHKTLRGCRAGIIFYRR 271

Query:   247 -----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKV 297
                  DP  G E    LES IN+AVFPGLQGGPHNH I G+AV LK A +PEF++YQ++V
Sbjct:   272 GVRSVDPKTGKETLYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFRLYQHQV 331

Query:   298 VSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPG 357
             V+NCR LA  L+ELGYK+V+GGSDNHL+LVDLR  G DG R EK+L+  SI  NKN+ PG
Sbjct:   332 VANCRVLAETLMELGYKVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPG 391

Query:   358 DKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQG-SKLQDFMNF 416
             DKSAL P G+R+G+PA+T+RG  EKEF  +A F+H G+E+TL+ +  +   + L++F   
Sbjct:   392 DKSALRPSGLRLGTPALTSRGLLEKEFQKVAQFVHRGIELTLQIQNDIGARATLKEFREK 451

Query:   417 VTSPNFSLMNNVADLRGRVEALTTQFPIPGV 447
             +          +  LR  VE+  + FP+PG+
Sbjct:   452 LAGDE-KHQRAIRALREEVESFASLFPLPGL 481

GO:0035999 "tetrahydrofolate interconversion" evidence=IEA

GO:0051262 "protein tetramerization" evidence=IEA

GO:0046655 "folic acid metabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0009113 "purine nucleobase biosynthetic process" evidence=IEA

GO:0006565 "L-serine catabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006544 "glycine metabolic process" evidence=IEA

GO:0004372 "glycine hydroxymethyltransferase activity" evidence=IEA

UNIPROTKB|E1BS67 SHMT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1414 (502.8 bits), Expect = 1.1e-144, P = 1.1e-144
 Identities = 272/454 (59%), Positives = 341/454 (75%)

Query:     5 NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
             +PEV  II KEK+RQ   LELIASENF S AV+EA+GSCL NKYSEG PG+RYYGG E++
Sbjct:    32 DPEVYNIIKKEKQRQRLGLELIASENFASCAVLEALGSCLNNKYSEGYPGQRYYGGTEFV 91

Query:    65 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
             DELE LCQKRAL AF LD  KWGVNVQP SGSPANF VYTA+++PH RIMGLDLP GGHL
Sbjct:    92 DELERLCQKRALQAFRLDPQKWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHL 151

Query:   125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIA-GASAYPRD 183
             +HGFMT K+++S TS++FESMPY+++  TG +DYD LE+ A LF PKLIIA G S Y R+
Sbjct:   152 THGFMTDKKKISATSVFFESMPYKVNPKTGYIDYDKLEENARLFHPKLIIAAGVSCYSRN 211

Query:   184 FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIF 243
              DY RMRQIA+A  A LM DMAHISGLVAA VV  PF++CDVV+TTTHK+LRG R GMIF
Sbjct:   212 LDYARMRQIANANSAYLMADMAHISGLVAAGVVPSPFEHCDVVSTTTHKTLRGCRAGMIF 271

Query:   244 FKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ 294
             ++K     DP  G E    LES IN AVFPGLQGGPHNH I G+AV L+ A +PEFK YQ
Sbjct:   272 YRKGTRSTDPKTGKETLYNLESLINQAVFPGLQGGPHNHAIAGIAVALQQAMTPEFKAYQ 331

Query:   295 NKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNS 354
              +VV+NC+ LA+ L+E+GY +V+GGSDNHL+L+DLR  G DG R E++L++ SI  NKN+
Sbjct:   332 QQVVANCKTLAAALMEMGYDIVTGGSDNHLILLDLRNRGTDGGRAERVLELCSIACNKNT 391

Query:   355 VPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKK-LVQGSKLQDF 413
              PGD SAL P G+R G+PA+T+RGF + +F  +A +IH+G+E+TL  +K +   + L++F
Sbjct:   392 CPGDVSALRPSGLRFGTPALTSRGFRQDDFRTVARYIHKGIELTLRVQKDMNPKATLKEF 451

Query:   414 MNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 447
                +    +     +  L+  VEA    FP+PG+
Sbjct:   452 KEKLEEEKYQ--GELKALKEEVEAFAATFPLPGL 483

GO:0004372 "glycine hydroxymethyltransferase activity" evidence=IEA

GO:0006544 "glycine metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0035999 "tetrahydrofolate interconversion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006565 "L-serine catabolic process" evidence=IEA

GO:0009113 "purine nucleobase biosynthetic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0046655 "folic acid metabolic process" evidence=IEA

GO:0051262 "protein tetramerization" evidence=IEA

MGI|MGI:98299 Shmt1 "serine hydroxymethyltransferase 1 (soluble)" [Mus musculus (taxid:10090)]

 Score = 1411 (501.8 bits), Expect = 2.2e-144, P = 2.2e-144
 Identities = 274/451 (60%), Positives = 338/451 (74%)

Query:     7 EVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDE 66
             EV  II KE  RQ   LELIASENF SRAV+EA+GSCL NKYSEG PG+RYYGG E+IDE
Sbjct:    26 EVYSIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDE 85

Query:    67 LETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSH 126
             LE LCQKRAL A++LD   WGVNVQP SGSPANF VYTA+++PH RIMGLDLP GGHL+H
Sbjct:    86 LEMLCQKRALQAYHLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTH 145

Query:   127 GFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDY 186
             GFMT K+++S TSI+FESMPY++   TG ++YD LE+ A LF PKLIIAG S Y R+ DY
Sbjct:   146 GFMTDKKKISATSIFFESMPYKVYPETGYINYDQLEENASLFHPKLIIAGTSCYSRNLDY 205

Query:   187 PRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKK 246
              R+R+IAD  GA LM DMAHISGLVAA VV  PF++C VVTTTTHK+LRG R GMIF++K
Sbjct:   206 ARLRKIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRK 265

Query:   247 -----DPVLG----VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKV 297
                  DP  G     ELES IN+AVFPGLQGGPHNH I G+AV LK A + EFK+YQ +V
Sbjct:   266 GVRSVDPKTGKETYYELESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTTEFKIYQLQV 325

Query:   298 VSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPG 357
             ++NCRAL+  L ELGYK+V+GGSDNHL+L+DLR  G DG R EK+L+  SI  NKN+ PG
Sbjct:   326 LANCRALSDALTELGYKIVTGGSDNHLILMDLRSKGTDGGRAEKVLEACSIACNKNTCPG 385

Query:   358 DKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKK-LVQGSKLQDFMNF 416
             DKSAL P G+R+G+PA+T+RG  E++F  +A FIH G+E+TL+ +  +   + L++F   
Sbjct:   386 DKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQSHMATKATLKEFKEK 445

Query:   417 VTSPNFSLMNNVADLRGRVEALTTQFPIPGV 447
             +      + + VA LR  VE   + F +PG+
Sbjct:   446 LAGDE-KIQSAVATLREEVENFASNFSLPGL 475

GO:0003824 "catalytic activity" evidence=IEA

GO:0004372 "glycine hydroxymethyltransferase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005829 "cytosol" evidence=ISO

GO:0006544 "glycine metabolic process" evidence=ISO

GO:0006545 "glycine biosynthetic process" evidence=ISO

GO:0006563 "L-serine metabolic process" evidence=IEA

GO:0006565 "L-serine catabolic process" evidence=ISO

GO:0006730 "one-carbon metabolic process" evidence=IEA

GO:0008732 "L-allo-threonine aldolase activity" evidence=ISO

GO:0009113 "purine nucleobase biosynthetic process" evidence=ISO

GO:0016597 "amino acid binding" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0019264 "glycine biosynthetic process from serine" evidence=ISO

GO:0030170 "pyridoxal phosphate binding" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0046655 "folic acid metabolic process" evidence=ISO

GO:0051262 "protein tetramerization" evidence=ISO

GO:0051289 "protein homotetramerization" evidence=ISO

UNIPROTKB|Q3SZ20 SHMT2 "Serine hydroxymethyltransferase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 1405 (499.6 bits), Expect = 9.6e-144, P = 9.6e-144
 Identities = 271/452 (59%), Positives = 342/452 (75%)

Query:     5 NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
             +PE+ E++ +EK+RQ + LELIASENF SRA +EA+GSCL NKYSEG PGKRYYGG E +
Sbjct:    53 DPEMWELLRREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVV 112

Query:    65 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
             DE+E LCQ+RAL AF+LD  +WGVNVQP SGSPAN   YTA+L+PHDRIMGLDLP GGHL
Sbjct:   113 DEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDLPDGGHL 172

Query:   125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
             +HG+M+  +R+S TSI+FESMPY+L+  TGL+DYD L  TA LF+P+LIIAG SAY R  
Sbjct:   173 THGYMSDVKRISATSIFFESMPYKLNPQTGLIDYDQLALTARLFKPRLIIAGTSAYARLI 232

Query:   185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
             DY RMR++ D V A L+ DMAHISGLVAA V+  PFK+ D+VTTTTHK+LRG R G+IF+
Sbjct:   233 DYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIFY 292

Query:   245 KK-----DPVLGVEL----ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQN 295
             +K     DP  G E+    E  IN AVFP LQGGPHNH I  +AV LK A +P F+ Y  
Sbjct:   293 RKGVQAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSL 352

Query:   296 KVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSV 355
             +++ N +A+A+ L+E GY LVSGG+DNHLVLVDLRP G+DGAR E++L++ SIT NKN+ 
Sbjct:   353 QILKNAQAMANALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTC 412

Query:   356 PGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMN 415
             PGD+SA+ PGG+R+G+PA+T+RGF E +F  +  FI EGV I LE K   + +KLQDF +
Sbjct:   413 PGDRSAITPGGLRLGAPALTSRGFLEDDFRKVVGFIDEGVNIGLEVKS--KTTKLQDFKS 470

Query:   416 FVTS-PNFSLMNNVADLRGRVEALTTQFPIPG 446
             F+   P  S  + +ADLR RVE     FP+PG
Sbjct:   471 FLLKDPETS--HQLADLRQRVEQFARAFPMPG 500

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0042645 "mitochondrial nucleoid" evidence=ISS

GO:0003682 "chromatin binding" evidence=ISS

GO:0035999 "tetrahydrofolate interconversion" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IEA

GO:0004372 "glycine hydroxymethyltransferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006563 "L-serine metabolic process" evidence=IEA

GO:0006544 "glycine metabolic process" evidence=IEA

UNIPROTKB|P34897 SHMT2 "Serine hydroxymethyltransferase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 1405 (499.6 bits), Expect = 9.6e-144, P = 9.6e-144
 Identities = 271/451 (60%), Positives = 340/451 (75%)

Query:     5 NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
             +PE+ E++ +EK+RQ + LELIASENF SRA +EA+GSCL NKYSEG PGKRYYGG E +
Sbjct:    53 DPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVV 112

Query:    65 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
             DE+E LCQ+RAL AF+LD  +WGVNVQP SGSPAN  VYTA+L+PHDRIMGLDLP GGHL
Sbjct:   113 DEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHL 172

Query:   125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
             +HG+M+  +R+S TSI+FESMPY+L+  TGL+DY+ L  TA LFRP+LIIAG SAY R  
Sbjct:   173 THGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYARLI 232

Query:   185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
             DY RMR++ D V A L+ DMAHISGLVAA V+  PFK+ D+VTTTTHK+LRG R G+IF+
Sbjct:   233 DYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIFY 292

Query:   245 KK-----DPVLGVEL----ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQN 295
             +K     DP  G E+    E  IN AVFP LQGGPHNH I  +AV LK A +P F+ Y  
Sbjct:   293 RKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSL 352

Query:   296 KVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSV 355
             +V+ N RA+A  L+E GY LVSGG+DNHLVLVDLRP G+DGAR E++L++ SIT NKN+ 
Sbjct:   353 QVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTC 412

Query:   356 PGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMN 415
             PGD+SA+ PGG+R+G+PA+T+R F E +F  + DFI EGV I LE K   + +KLQDF +
Sbjct:   413 PGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKS--KTAKLQDFKS 470

Query:   416 FVTSPNFSLMNNVADLRGRVEALTTQFPIPG 446
             F+   +      +A+LR RVE     FP+PG
Sbjct:   471 FLLKDS-ETSQRLANLRQRVEQFARAFPMPG 500

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0008732 "L-allo-threonine aldolase activity" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0019264 "glycine biosynthetic process from serine" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0051289 "protein homotetramerization" evidence=IEA

GO:0035999 "tetrahydrofolate interconversion" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0004372 "glycine hydroxymethyltransferase activity" evidence=IDA

GO:0006730 "one-carbon metabolic process" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0042645 "mitochondrial nucleoid" evidence=IDA

GO:0015630 "microtubule cytoskeleton" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P34898	GLYC_NEUCR	2, ., 1, ., 2, ., 1	0.5995	0.9798	0.9125	N/A	no
P34899	GLYM_PEA	2, ., 1, ., 2, ., 1	0.6079	0.9955	0.8590	N/A	no
Q74CR5	GLYA_GEOSL	2, ., 1, ., 2, ., 1	0.4629	0.9060	0.9759	yes	no
P34897	GLYM_HUMAN	2, ., 1, ., 2, ., 1	0.6008	0.9821	0.8710	yes	no
Q75BQ6	GLYC_ASHGO	2, ., 1, ., 2, ., 1	0.5526	0.9865	0.9402	yes	no
P37291	GLYC_YEAST	2, ., 1, ., 2, ., 1	0.6009	0.9172	0.8742	yes	no
Q60V73	GLYC_CAEBR	2, ., 1, ., 2, ., 1	0.6008	0.9888	0.8649	N/A	no
B0K742	GLYA_THEP3	2, ., 1, ., 2, ., 1	0.5280	0.8411	0.9104	yes	no
Q3K5K9	GLYA3_PSEPF	2, ., 1, ., 2, ., 1	0.5051	0.8456	0.9064	yes	no
Q39V87	GLYA_GEOMG	2, ., 1, ., 2, ., 1	0.4686	0.9038	0.9734	yes	no
Q6AM21	GLYA_DESPS	2, ., 1, ., 2, ., 1	0.4732	0.9105	0.9576	yes	no
B1I6M4	GLYA_DESAP	2, ., 1, ., 2, ., 1	0.5372	0.8344	0.8987	yes	no
Q3A934	GLYA_CARHZ	2, ., 1, ., 2, ., 1	0.5153	0.8411	0.8931	yes	no
P35623	GLYC_SHEEP	2, ., 1, ., 2, ., 1	0.6097	0.9843	0.9090	N/A	no
A9WI58	GLYA_CHLAA	2, ., 1, ., 2, ., 1	0.5101	0.8456	0.9021	yes	no
B9LKK8	GLYA_CHLSY	2, ., 1, ., 2, ., 1	0.5126	0.8456	0.9021	yes	no
B8E008	GLYA_DICTD	2, ., 1, ., 2, ., 1	0.5140	0.8389	0.9057	yes	no
P14519	GLYM_RABIT	2, ., 1, ., 2, ., 1	0.6039	0.9798	0.8690	yes	no
Q8R887	GLYA_THETN	2, ., 1, ., 2, ., 1	0.5306	0.8411	0.9104	yes	no
B0K631	GLYA_THEPX	2, ., 1, ., 2, ., 1	0.5280	0.8411	0.9104	yes	no
A4XL61	GLYA_CALS8	2, ., 1, ., 2, ., 1	0.5075	0.8501	0.9112	yes	no
O62585	GLYC_ENCCU	2, ., 1, ., 2, ., 1	0.4966	0.9843	0.9565	yes	no
P50432	GLYC_CAEEL	2, ., 1, ., 2, ., 1	0.6030	0.9888	0.8717	yes	no
P50433	GLYM_SOLTU	2, ., 1, ., 2, ., 1	0.6167	0.9955	0.8590	N/A	no
Q5E9P9	GLYC_BOVIN	2, ., 1, ., 2, ., 1	0.6097	0.9843	0.9090	yes	no
A8MGL7	GLYA_ALKOO	2, ., 1, ., 2, ., 1	0.5153	0.8411	0.9170	yes	no
Q6FUP6	GLYC_CANGA	2, ., 1, ., 2, ., 1	0.5494	0.9843	0.9381	yes	no
O13425	GLYM_CANAX	2, ., 1, ., 2, ., 1	0.5692	0.9932	0.9006	N/A	no
P49357	GLYM_FLAPR	2, ., 1, ., 2, ., 1	0.6035	0.9932	0.8588	N/A	no
O13426	GLYC_CANAL	2, ., 1, ., 2, ., 1	0.5758	0.9843	0.9361	N/A	no
Q01QZ0	GLYA_SOLUE	2, ., 1, ., 2, ., 1	0.4728	0.8993	0.9436	yes	no
B9MR57	GLYA_CALBD	2, ., 1, ., 2, ., 1	0.5151	0.8501	0.9156	yes	no
O66776	GLYA_AQUAE	2, ., 1, ., 2, ., 1	0.5172	0.8612	0.8995	yes	no
P49358	GLYN_FLAPR	2, ., 1, ., 2, ., 1	0.6153	0.9910	0.8568	N/A	no
Q54Z26	GLYC1_DICDI	2, ., 1, ., 2, ., 1	0.5846	0.9843	0.9628	yes	no
Q10104	GLYM_SCHPO	2, ., 1, ., 2, ., 1	0.5798	0.9888	0.9057	yes	no
Q4K4P6	GLYA2_PSEF5	2, ., 1, ., 2, ., 1	0.5025	0.8456	0.9064	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.2	0.963
4th Layer	2.1.2.1	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	447
PLN03226	475	PLN03226, PLN03226, serine hydroxymethyltransferas	0.0
PTZ00094	452	PTZ00094, PTZ00094, serine hydroxymethyltransferas	0.0
pfam00464	380	pfam00464, SHMT, Serine hydroxymethyltransferase	0.0
cd00378	402	cd00378, SHMT, Serine-glycine hydroxymethyltransfe	0.0
COG0112	413	COG0112, GlyA, Glycine/serine hydroxymethyltransfe	0.0
PRK00011	416	PRK00011, glyA, serine hydroxymethyltransferase; R	0.0
PLN02271	586	PLN02271, PLN02271, serine hydroxymethyltransferas	0.0
PRK13034	416	PRK13034, PRK13034, serine hydroxymethyltransferas	0.0
PRK13580	493	PRK13580, PRK13580, serine hydroxymethyltransferas	1e-122
cd01494	170	cd01494, AAT_I, Aspartate aminotransferase (AAT) s	1e-26
cd00609	350	cd00609, AAT_like, Aspartate aminotransferase fami	2e-05
COG0520	405	COG0520, csdA, Selenocysteine lyase/Cysteine desul	5e-05
pfam00155	357	pfam00155, Aminotran_1_2, Aminotransferase class I	0.002

>gnl|CDD|215639 PLN03226, PLN03226, serine hydroxymethyltransferase; Provisional

 Score =  886 bits (2292), Expect = 0.0
 Identities = 317/450 (70%), Positives = 364/450 (80%), Gaps = 11/450 (2%)

Query: 6   PEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYID 65
           PE+ +II KEK RQ+K LELIASENFTSRAVMEA+GSCLTNKYSEGLPG RYYGGNEYID
Sbjct: 20  PEIADIIEKEKRRQWKGLELIASENFTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYID 79

Query: 66  ELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLS 125
           ++ETLCQKRAL AF LD  KWGVNVQPLSGSPANF VYTA+L+PHDRIMGLDLPHGGHLS
Sbjct: 80  QIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALLQPHDRIMGLDLPHGGHLS 139

Query: 126 HGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFD 185
           HG+ T  +++S TSIYFESMPYRLDESTGL+DYD LEK A+LFRPKLIIAGASAYPRD+D
Sbjct: 140 HGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAMLFRPKLIIAGASAYPRDWD 199

Query: 186 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFK 245
           Y RMR+IAD VGALLM DMAHISGLVAA   A PF+YCDVVTTTTHKSLRGPRGGMIFF+
Sbjct: 200 YARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEYCDVVTTTTHKSLRGPRGGMIFFR 259

Query: 246 KDPVLG--------VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKV 297
           K P            + E  IN AVFPGLQGGPHNHTI  LAV LK A +PEFK YQ +V
Sbjct: 260 KGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQV 319

Query: 298 VSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPG 357
            +N  ALA+RL+  GYKLV+GG+DNHLVL DLRP+G+ G+RVEK+LD+A ITLNKN+VPG
Sbjct: 320 KANAAALANRLMSKGYKLVTGGTDNHLVLWDLRPLGLTGSRVEKVLDLAHITLNKNAVPG 379

Query: 358 DKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFV 417
           D SALVPGG+RIG+PAMT+RG  EK+F  +A+F+H  V I L+ +K   G KL+DF   +
Sbjct: 380 DSSALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVTIALKIQK-EHGKKLKDFKKGL 438

Query: 418 TSPNFSLMNNVADLRGRVEALTTQFPIPGV 447
            S +FS   ++  LR  VE   T FP+PG 
Sbjct: 439 ESNDFS--KDIEALRAEVEEFATSFPMPGF 466

Length = 475

>gnl|CDD|240264 PTZ00094, PTZ00094, serine hydroxymethyltransferase; Provisional

 Score =  753 bits (1947), Expect = 0.0
 Identities = 277/442 (62%), Positives = 340/442 (76%), Gaps = 11/442 (2%)

Query: 6   PEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYID 65
           PE+ E+I KEKERQ + LELIASENFTSRAV+E +GSC TNKY+EGLPG RYYGGNE +D
Sbjct: 20  PELYELIEKEKERQIEGLELIASENFTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVD 79

Query: 66  ELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLS 125
           ++E LCQKRAL AF LD  +WGVNVQP SGSPANF VYTA+L+PHDRIMGLDLP GGHL+
Sbjct: 80  KIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLT 139

Query: 126 HGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFD 185
           HGF T K++VS TSIYFES+PY+++E  GL+DYD LE+ A  FRPKLIIAGASAYPRD D
Sbjct: 140 HGFYTAKKKVSATSIYFESLPYQVNE-KGLIDYDKLEELAKAFRPKLIIAGASAYPRDID 198

Query: 186 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFK 245
           Y R R+I D+VGA LM D+AH SGLVAA V+  PF Y DVVTTTTHKSLRGPR G+IF++
Sbjct: 199 YKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLRGPRSGLIFYR 258

Query: 246 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA 305
           K   +  ++E+ IN AVFPGLQGGPHNH I  +AV LK  QSPE+K Y  +V+ N +ALA
Sbjct: 259 KK--VKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALA 316

Query: 306 SRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPG 365
           + L + GY LV+GG+DNHLVLVDLRP GI G+++EK+LD  +I++NKN++PGDKSAL P 
Sbjct: 317 AALEKRGYDLVTGGTDNHLVLVDLRPFGITGSKMEKLLDAVNISVNKNTIPGDKSALNPS 376

Query: 366 GIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFM-NFVTSPNFSL 424
           G+R+G+PA+TTRG  EK+F  +ADF+   V++  E +K V G KL DF      +P    
Sbjct: 377 GVRLGTPALTTRGAKEKDFKFVADFLDRAVKLAQEIQKQV-GKKLVDFKKALEKNP---- 431

Query: 425 MNNVADLRGRVEALTTQFPIPG 446
              +  LR  V    +QFP PG
Sbjct: 432 --ELQKLRQEVVEFASQFPFPG 451

Length = 452

>gnl|CDD|189558 pfam00464, SHMT, Serine hydroxymethyltransferase

 Score =  657 bits (1696), Expect = 0.0
 Identities = 252/388 (64%), Positives = 296/388 (76%), Gaps = 13/388 (3%)

Query: 5   NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
           +PE+ +II KEKERQ + +ELIASENFTSRAVMEA+GS LTNKY+EG PGKRYYGG EY+
Sbjct: 5   DPEIFDIIKKEKERQREGIELIASENFTSRAVMEALGSVLTNKYAEGYPGKRYYGGCEYV 64

Query: 65  DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
           DE+ETL Q RA   F LD    GVNVQPLSGS AN  VYTA+L P DRIMGLDLPHGGHL
Sbjct: 65  DEVETLAQDRAKELFGLD----GVNVQPLSGSQANLAVYTALLNPGDRIMGLDLPHGGHL 120

Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
           +HG+         +  +FESMPY +D  TGL+DYD LEK A LF+PKLI+AG SAY R  
Sbjct: 121 THGYPVNF-----SGKFFESMPYGVDPDTGLIDYDQLEKNAKLFKPKLIVAGTSAYSRLI 175

Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
           DY R R+IAD VGA LM+DMAHI+GLVAA V+  PF Y  VVTTTTHK+LRGPRGGMIFF
Sbjct: 176 DYARFREIADEVGAYLMVDMAHIAGLVAAGVIPSPFPYAHVVTTTTHKTLRGPRGGMIFF 235

Query: 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
           ++      ELE  IN+AVFPGLQGGP NH I   AV LK A +PEFKVYQ +V+ N +AL
Sbjct: 236 REIL---YELEKKINSAVFPGLQGGPLNHVIAAKAVALKQALTPEFKVYQQQVLKNAKAL 292

Query: 305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALV 363
           A  L E GYKLVSGG+DNHLVLVDLRP G+DG R EK L+ A+IT NKN++PGD KS  V
Sbjct: 293 AEALKERGYKLVSGGTDNHLVLVDLRPKGLDGKRAEKALERANITANKNTIPGDPKSPFV 352

Query: 364 PGGIRIGSPAMTTRGFSEKEFVAIADFI 391
             G+R+G+PA+T+RGF E +F  +A +I
Sbjct: 353 TSGLRLGTPALTSRGFGEADFEEVAGYI 380

Length = 380

>gnl|CDD|99733 cd00378, SHMT, Serine-glycine hydroxymethyltransferase (SHMT)

 Score =  643 bits (1661), Expect = 0.0
 Identities = 237/400 (59%), Positives = 282/400 (70%), Gaps = 13/400 (3%)

Query: 6   PEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYID 65
           PE+ EII KE ERQ ++LELIASENFTS AVMEA+GS LTNKY+EG PGKRYYGG EY+D
Sbjct: 5   PEIAEIIKKENERQRETLELIASENFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVD 64

Query: 66  ELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLS 125
           E+E L  +RA   F  +      NVQP SGS AN  VY A+L+P D IMGLDL HGGHL+
Sbjct: 65  EIEDLAIERAKKLFGAE----YANVQPHSGSQANLAVYFALLEPGDTIMGLDLSHGGHLT 120

Query: 126 HGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFD 185
           HG  T   +VS +   FES+PY +D  TGL+DYD LEK A+ F+PKLI+AGASAYPR  D
Sbjct: 121 HGSFT---KVSASGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAGASAYPRPID 177

Query: 186 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFK 245
           + R R+IAD VGA L++DMAH++GLVA  V  +P    DVVTTTTHK+LRGPRGG+I  +
Sbjct: 178 FKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLPGADVVTTTTHKTLRGPRGGLILTR 237

Query: 246 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA 305
           K      EL   IN+AVFPGLQGGPH H I   AV LK A  PEFK Y  +VV N +ALA
Sbjct: 238 KG-----ELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALA 292

Query: 306 SRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKS-ALVP 364
             L E G+K+VSGG+DNHLVLVDLRP GI G   E  L+ A IT+NKN++P D S   VP
Sbjct: 293 EALKERGFKVVSGGTDNHLVLVDLRPKGITGKAAEDALEEAGITVNKNTLPWDPSSPFVP 352

Query: 365 GGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKL 404
            GIRIG+PAMTTRG  E+E   IADFI   ++   +    
Sbjct: 353 SGIRIGTPAMTTRGMGEEEMEEIADFIARALKDAEDVAVA 392

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. Length = 402

>gnl|CDD|223190 COG0112, GlyA, Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

 Score =  608 bits (1571), Expect = 0.0
 Identities = 227/442 (51%), Positives = 279/442 (63%), Gaps = 41/442 (9%)

Query: 6   PEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYID 65
           PE+ E I +E ERQ + +ELIASENFTS AVMEA GS LTNKY+EG PGKRYYGG EY+D
Sbjct: 12  PEIFEAIQQELERQREHIELIASENFTSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVD 71

Query: 66  ELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLS 125
           E+E L  +RA   F  +      NVQP SGS AN  VY A+L+P D IMGLDL HGGHL+
Sbjct: 72  EVEELAIERAKKLFGAE----YANVQPHSGSQANQAVYLALLQPGDTIMGLDLSHGGHLT 127

Query: 126 HGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFD 185
           HG       V+ +   F  + Y +D  TGL+DYD +EK A   +PKLIIAG SAY R  D
Sbjct: 128 HG-----SPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKEVKPKLIIAGGSAYSRPID 182

Query: 186 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFK 245
           + R R+IAD VGA LM+DMAH++GL+A  V  +P  + DVVTTTTHK+LRGPRGG+I   
Sbjct: 183 FKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPHADVVTTTTHKTLRGPRGGIILTN 242

Query: 246 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA 305
            +     EL   IN+AVFPGLQGGP  H I   AV  K A  PEFK Y  +VV N +ALA
Sbjct: 243 DE-----ELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALA 297

Query: 306 SRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVP 364
             L E G+K+VSGG+DNHLVLVDLR  G+ G + E  L+ A IT+NKN++P D +S  V 
Sbjct: 298 EALKERGFKVVSGGTDNHLVLVDLRSKGLTGKKAEAALERAGITVNKNAIPFDPESPFVT 357

Query: 365 GGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSL 424
            GIRIG+PA+TTRGF E E   IAD I +     L+  K V                   
Sbjct: 358 SGIRIGTPAVTTRGFGEAEMEEIADLIAD----VLDGLKDV------------------- 394

Query: 425 MNNVADLRGRVEALTTQFPIPG 446
               A+++  V  L  +FP+  
Sbjct: 395 ---PAEVKEEVAELCRRFPLYK 413

Length = 413

>gnl|CDD|234571 PRK00011, glyA, serine hydroxymethyltransferase; Reviewed

 Score =  599 bits (1548), Expect = 0.0
 Identities = 221/443 (49%), Positives = 280/443 (63%), Gaps = 39/443 (8%)

Query: 5   NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
           +PE+ + I +E +RQ + +ELIASENF S AVMEA GS LTNKY+EG PGKRYYGG EY+
Sbjct: 10  DPEIADAIEQELKRQEEHIELIASENFVSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYV 69

Query: 65  DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
           D +E L   RA   F  +      NVQP SGS AN  VY A+LKP D I+G+DL HGGHL
Sbjct: 70  DVVEQLAIDRAKELFGAEY----ANVQPHSGSQANAAVYFALLKPGDTILGMDLAHGGHL 125

Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
           +HG       V+ +   +  + Y +DE TGL+DYD +EK A+  +PKLIIAGASAY R  
Sbjct: 126 THG-----SPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALEHKPKLIIAGASAYSRPI 180

Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
           D+ R R+IAD VGA LM+DMAHI+GLVAA V   P  + DVVTTTTHK+LRGPRGG+I  
Sbjct: 181 DFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVPHADVVTTTTHKTLRGPRGGLILT 240

Query: 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
             +     EL   IN+AVFPG+QGGP  H I   AV  K A  PEFK Y  +VV N +AL
Sbjct: 241 NDE-----ELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKAL 295

Query: 305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALV 363
           A  L E G+++VSGG+DNHLVLVDLR  G+ G   E  L+ A+IT+NKN+VP D +S  V
Sbjct: 296 AEALAERGFRVVSGGTDNHLVLVDLRSKGLTGKEAEAALEEANITVNKNAVPFDPRSPFV 355

Query: 364 PGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFS 423
             GIRIG+PA+TTRGF E E   IA+ I + ++                        N  
Sbjct: 356 TSGIRIGTPAITTRGFKEAEMKEIAELIADVLD------------------------NPD 391

Query: 424 LMNNVADLRGRVEALTTQFPIPG 446
               + +++  V+ L  +FP+  
Sbjct: 392 DEAVIEEVKEEVKELCKRFPLYK 414

Length = 416

>gnl|CDD|215153 PLN02271, PLN02271, serine hydroxymethyltransferase

 Score =  590 bits (1523), Expect = 0.0
 Identities = 250/459 (54%), Positives = 323/459 (70%), Gaps = 25/459 (5%)

Query: 5   NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
           +P++ E++ KEK+RQFK +ELIASENF  RAVMEA+GS LTNKYSEG+PG RYY GN+YI
Sbjct: 133 DPDIHELMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYI 192

Query: 65  DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
           D++E LC +RALAAF LD  KWGVNVQP S + ANF VYT +L P DRIMGLD P GGH+
Sbjct: 193 DQIERLCCERALAAFGLDSEKWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHM 252

Query: 125 SHGFMTPK-RRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRD 183
           SHG+ TP  ++VSG SI+FES+PY+++  TG +DYD LE+ A+ FRPK++I G S+YPR+
Sbjct: 253 SHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILICGGSSYPRE 312

Query: 184 FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIF 243
           +DY R RQIAD  GA+LM DMAHISGLVAA    +PF YCD+VT+TTHKSLRGPRGG+IF
Sbjct: 313 WDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSLRGPRGGIIF 372

Query: 244 FKKDPVL---------GVE-----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPE 289
           ++K P L         G +      E  IN AVFP LQGGPHN+ I  LA+ LK   +PE
Sbjct: 373 YRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPE 432

Query: 290 FKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASIT 349
           +K Y  +V  N +ALAS L+    +LV+GG+DNHL+L DL  +G+ G   EK+ +M  IT
Sbjct: 433 YKAYMQQVKKNAQALASALLRRKCRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHIT 492

Query: 350 LNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSK 409
           LNK ++ GD   + PGG+RIG+PAMT+RG  E +F  IADF+    +I    ++   G  
Sbjct: 493 LNKTAIFGDNGTISPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQIASAVQR-EHGKL 551

Query: 410 LQDFMNFVTSPNFSLMNN--VADLRGRVEALTTQFPIPG 446
            ++F+         L NN  + +LR RVEA  +QF +PG
Sbjct: 552 QKEFLK-------GLQNNKDIVELRNRVEAFASQFAMPG 583

Length = 586

>gnl|CDD|237280 PRK13034, PRK13034, serine hydroxymethyltransferase; Reviewed

 Score =  525 bits (1354), Expect = 0.0
 Identities = 231/446 (51%), Positives = 289/446 (64%), Gaps = 39/446 (8%)

Query: 1   MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 60
           ++  + EV   I KE ERQ   LELIASENFTS AVMEA GS LTNKY+EG PGKRYYGG
Sbjct: 9   LEEYDDEVFAAINKELERQQDHLELIASENFTSPAVMEAQGSVLTNKYAEGYPGKRYYGG 68

Query: 61  NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 120
            E++DE+E L  +RA   F  D      NVQP SGS AN  VY A+LKP D I+G+ L H
Sbjct: 69  CEFVDEVEALAIERAKQLFGCDY----ANVQPHSGSQANGAVYLALLKPGDTILGMSLSH 124

Query: 121 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 180
           GGHL+HG      +VS +  ++ ++ Y +D  TGL+DYD +E+ A   +PKLIIAG SAY
Sbjct: 125 GGHLTHG-----AKVSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLIIAGFSAY 179

Query: 181 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 240
           PR+ D+ R R+IAD VGALLM+DMAHI+GLVAA    +PF +  VVTTTTHK+LRGPRGG
Sbjct: 180 PRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTLRGPRGG 239

Query: 241 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 300
           MI    +     E+   IN+AVFPGLQGGP  H I   AV    A  PEFK Y  +V++N
Sbjct: 240 MILTNDE-----EIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIAN 294

Query: 301 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-K 359
            +ALA  L E GY LVSGG+DNHL+LVDLRP G+ G   E+ L+ A IT+NKN+VPGD +
Sbjct: 295 AQALAEVLKERGYDLVSGGTDNHLLLVDLRPKGLSGKDAEQALERAGITVNKNTVPGDTE 354

Query: 360 SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTS 419
           S  V  GIRIG+PA TTRGF E EF  IA++I +     L+    +  + L+        
Sbjct: 355 SPFVTSGIRIGTPAGTTRGFGEAEFREIANWILD----VLDD---LGNAALE-------- 399

Query: 420 PNFSLMNNVADLRGRVEALTTQFPIP 445
                      +R  V+AL ++FPI 
Sbjct: 400 ---------QRVRKEVKALCSRFPIY 416

Length = 416

>gnl|CDD|184161 PRK13580, PRK13580, serine hydroxymethyltransferase; Provisional

 Score =  364 bits (936), Expect = e-122
 Identities = 180/480 (37%), Positives = 255/480 (53%), Gaps = 64/480 (13%)

Query: 6   PEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYID 65
           P + E I +E   Q  SL+LIASEN++S AV  A+G+ LT+KY+EG PG R+Y G + +D
Sbjct: 35  PRIAEAIRQELADQRSSLKLIASENYSSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVD 94

Query: 66  ELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH--------------- 110
            +E    + A   F  +       VQP SG+ AN   + AIL                  
Sbjct: 95  TVEWEAAEHAKELFGAEH----AYVQPHSGADANLVAFWAILAHKVESPALEKLGAKTVN 150

Query: 111 ----------------DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG 154
                            R++G+ L  GGHL+HGF     R + +   F    Y +D  TG
Sbjct: 151 DLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGF-----RPNISGKMFHQRSYGVDPDTG 205

Query: 155 LVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAAS 214
           L+DYD +   A  F+P +++AG SAYPR  ++ ++R+IAD VGA+LM+DMAH +GLVA  
Sbjct: 206 LLDYDEIAALAREFKPLILVAGYSAYPRRVNFAKLREIADEVGAVLMVDMAHFAGLVAGK 265

Query: 215 VVA---DPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPH 271
           V     DP  + D+VTTTTHK+LRGPRGG++  KK      E   A++    P + GGP 
Sbjct: 266 VFTGDEDPVPHADIVTTTTHKTLRGPRGGLVLAKK------EYADAVDKGC-PLVLGGPL 318

Query: 272 NHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRP 331
            H +   AV L  A++PEF+ Y  +VV N RALA   ++ G +LV+GG+DNHLVL+D+  
Sbjct: 319 PHVMAAKAVALAEARTPEFQKYAQQVVDNARALAEGFLKRGARLVTGGTDNHLVLIDVTS 378

Query: 332 MGIDGARVEKILDMASITLNKNSVPGDKS-ALVPGGIRIGSPAMTTRGFSEKEFVAIADF 390
            G+ G + E  L  A I  N+NS+P D + A    GIR+G+PA+TT G    E   +A+ 
Sbjct: 379 FGLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAEL 438

Query: 391 IHEGVE-ITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVAD-LRGRVEALTTQFPI-PGV 447
           I + +   T         SK      +           VA  +R RV  L  +FP+ P +
Sbjct: 439 IVKVLSNTTPGTTAEGAPSK----AKYELDE------GVAQEVRARVAELLARFPLYPEI 488

Length = 493

>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

 Score =  105 bits (263), Expect = 1e-26
 Identities = 44/182 (24%), Positives = 70/182 (38%), Gaps = 15/182 (8%)

Query: 67  LETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSH 126
                +++                 P SG+ AN     A+L P D ++     HG     
Sbjct: 1   KLEELEEKLARLLQ--PGNDKAVFVP-SGTGANEAALLALLGPGDEVIVDANGHGSRY-- 55

Query: 127 GFMTPKRRVSGTSIYFESMPYRLDEST-GLVDYDMLEKTAILFRPKLIIAGASAYPRDFD 185
                   V+      + +P  +D++  G +D  +LE+        LI+   +       
Sbjct: 56  -------WVAAELAGAKPVPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVL 108

Query: 186 YP--RMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIF 243
            P   +R+IA   G LL++D A   G   A  V  P    DVVT + HK+L G  GG++ 
Sbjct: 109 VPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNLGGEGGGVVI 168

Query: 244 FK 245
            K
Sbjct: 169 VK 170

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170

>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 64/334 (19%), Positives = 117/334 (35%), Gaps = 43/334 (12%)

Query: 53  PGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGV---NVQPLSGS-PANFEVYTAILK 108
            G   Y  +  + EL     + A+A +        V    +   +G+  A   +  A+L 
Sbjct: 27  AGLLGYYPDPGLPEL-----REAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLN 81

Query: 109 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF 168
           P D ++   +P   +  +       R++G  +     P  LDE  G +    L + A   
Sbjct: 82  PGDEVL---VPDPTYPGYEAAA---RLAGAEVV----PVPLDEEGGFLLDLELLEAAKTP 131

Query: 169 RPKLIIAGASAYP--RDFDYPRMRQIADAV---GALLMMDMAHISGLVAASVVADPFKYC 223
           + KL+       P         + ++A+     G L++ D A+ + LV            
Sbjct: 132 KTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAY-AELVYDGEPPPALALL 190

Query: 224 D-----VVTTTTHKSLRGP--RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIG 276
           D     +V  +  K+   P  R G +    + +L           + P    GP   +  
Sbjct: 191 DAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELL------ERLKKLLPYTTSGPSTLSQA 244

Query: 277 GLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDG 336
             A  L   +    +  + +      AL   L ELG  +V   S    + +DL   G D 
Sbjct: 245 AAAAALDDGEE-HLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPE-GDDE 302

Query: 337 ARVEKILDMASITLNKNSVPGDKSALVPGGIRIG 370
             +E++L  A + +   S  G+      G +R+ 
Sbjct: 303 EFLERLLLEAGVVVRPGSAFGEGG---EGFVRLS 333

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350

>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 44/233 (18%), Positives = 84/233 (36%), Gaps = 27/233 (11%)

Query: 184 FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMI 242
                + ++A   GAL+++D A  +G +   V       CD +  + HK L GP G G++
Sbjct: 179 NPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQEL---GCDFLAFSGHKWLLGPTGIGVL 235

Query: 243 FFKKD-------PVLGVELESAINNAVFPGLQGGPHN------HTIG--GLAVCLKHAQS 287
           + +K+        + G  +   ++      L   P        +  G  GLA  L +   
Sbjct: 236 YVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLE 295

Query: 288 PEFKVYQNKVVSNCRALASRLVELGYKLVSG-GSDNHLVLVDLRPMGIDGARVEKILDMA 346
              +  +         L   L EL    + G    +   +V     GI    V  +LD  
Sbjct: 296 IGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGIHPHDVATLLDEK 355

Query: 347 SITL---NKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 396
            I +   +  + P  +   V   IR  S  +     +E++   + + + + + 
Sbjct: 356 GIAVRAGHHCAQPLHRLLGVDATIRA-SLHLYN---TEEDVDRLLEALKKALA 404

Length = 405

>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 64/348 (18%), Positives = 112/348 (32%), Gaps = 66/348 (18%)

Query: 58  YGGNEYIDELETLCQKRALAAFNLDENKWG----VNVQPLSGSPANFEVYTAILK--PHD 111
           YG  + + EL       ALA F              V   SG+ AN E    +L+  P D
Sbjct: 37  YGPTDGLPELRE-----ALAKFLGRSPVLKLDREAAVVFGSGAGANIEALIFLLRLNPGD 91

Query: 112 RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-DESTGLVDYDMLEK--TAILF 168
            I+     +  +    F     R++G     E + Y L   +   +D+D LE        
Sbjct: 92  AILVPAPTYPSY-IRIF-----RLAG----GEVVRYPLYSSNDFHLDFDALEAALKEATE 141

Query: 169 RPKLIIAG------ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLV-----AASVVA 217
             K+++         +    + +  ++  +A     LL++D A+  G V     A +  A
Sbjct: 142 GNKVVLHTSPHNPTGTVATLE-ELEKLLDLAKEHNILLLVDEAYA-GFVFGSLDAVATRA 199

Query: 218 DPFKYCDVVTTTT-HKS--LRGPRGGMIFFKKDPVLGV-ELESAINNAVFPGLQGGPHNH 273
              +  +++   +  K+  L G R G I       LG   + S +           P   
Sbjct: 200 LLAEGPNLLVVGSFSKAFGLAGWRVGYI-------LGNAAVISQLRKLA------RPFYS 246

Query: 274 TIGGLAVCLKHAQSPEFKVYQNK-----VVSNCRALASRLVELGYKLVSGGSDNHLVLVD 328
           +    A        P     + +     +      L   L   G  ++   S     L+ 
Sbjct: 247 STHLQAAAAAALSDPLLVASELEEMRQRIKERRDYLRDGLEAAGLSVL--PSQAGFFLLT 304

Query: 329 LRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTT 376
                   A  + +L+   + +   S  G      PG +RI     T 
Sbjct: 305 GLDPEAALALAQVLLEEVGVYVTPGSSFG-----GPGWLRITVAGGTE 347

Length = 357

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	447
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	100.0
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	100.0
PLN02271	586	serine hydroxymethyltransferase	100.0
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	100.0
PLN03226	475	serine hydroxymethyltransferase; Provisional	100.0
PRK13580	493	serine hydroxymethyltransferase; Provisional	100.0
PTZ00094	452	serine hydroxymethyltransferase; Provisional	100.0
PRK13034	416	serine hydroxymethyltransferase; Reviewed	100.0
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	100.0
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	100.0
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	100.0
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	100.0
PRK10874	401	cysteine sulfinate desulfinase; Provisional	100.0
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	100.0
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	100.0
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	100.0
PLN02409	401	serine--glyoxylate aminotransaminase	99.98
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.98
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.97
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.97
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	99.97
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.97
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	99.97
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.97
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.97
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.97
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.97
PRK02948	381	cysteine desulfurase; Provisional	99.97
PLN02651	364	cysteine desulfurase	99.97
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.97
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.97
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.96
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.96
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.96
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.96
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.96
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	99.96
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.96
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.96
PRK07179	407	hypothetical protein; Provisional	99.96
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.96
PRK14012	404	cysteine desulfurase; Provisional	99.95
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.95
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.95
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.95
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.95
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.95
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.95
PLN02724	805	Molybdenum cofactor sulfurase	99.95
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.94
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.94
PLN00175	413	aminotransferase family protein; Provisional	99.94
PRK06108	382	aspartate aminotransferase; Provisional	99.94
PLN02483	489	serine palmitoyltransferase	99.94
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.94
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.94
PRK07681	399	aspartate aminotransferase; Provisional	99.94
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.94
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.94
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.94
PRK08960	387	hypothetical protein; Provisional	99.94
PRK02769	380	histidine decarboxylase; Provisional	99.94
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.94
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	99.94
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.94
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.94
PRK06207	405	aspartate aminotransferase; Provisional	99.94
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.94
PRK12414	384	putative aminotransferase; Provisional	99.94
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.94
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.94
PRK03080	378	phosphoserine aminotransferase; Provisional	99.94
PRK08361	391	aspartate aminotransferase; Provisional	99.94
PRK05957	389	aspartate aminotransferase; Provisional	99.93
PRK06290	410	aspartate aminotransferase; Provisional	99.93
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.93
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.93
PRK07682	378	hypothetical protein; Validated	99.93
PRK06225	380	aspartate aminotransferase; Provisional	99.93
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.93
PRK07337	388	aminotransferase; Validated	99.93
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.93
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.93
PRK13392	410	5-aminolevulinate synthase; Provisional	99.93
PRK09082	386	methionine aminotransferase; Validated	99.93
PLN02721	353	threonine aldolase	99.93
PRK05942	394	aspartate aminotransferase; Provisional	99.93
PLN02955	476	8-amino-7-oxononanoate synthase	99.93
PRK09064	407	5-aminolevulinate synthase; Validated	99.93
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.93
PRK08636	403	aspartate aminotransferase; Provisional	99.93
PRK08068	389	transaminase; Reviewed	99.93
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.93
PLN03032	374	serine decarboxylase; Provisional	99.92
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.92
PRK07550	386	hypothetical protein; Provisional	99.92
PRK08912	387	hypothetical protein; Provisional	99.92
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.92
PRK07777	387	aminotransferase; Validated	99.92
PRK13393	406	5-aminolevulinate synthase; Provisional	99.92
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	99.92
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.92
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.92
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.92
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.92
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.92
PRK06348	384	aspartate aminotransferase; Provisional	99.92
PLN02822	481	serine palmitoyltransferase	99.92
PLN02656	409	tyrosine transaminase	99.92
PRK05764	393	aspartate aminotransferase; Provisional	99.92
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.92
PRK07683	387	aminotransferase A; Validated	99.92
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.92
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	99.92
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.92
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.92
PRK08363	398	alanine aminotransferase; Validated	99.92
PRK01533	366	histidinol-phosphate aminotransferase; Validated	99.92
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.92
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.92
PRK07324	373	transaminase; Validated	99.92
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	99.91
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	99.91
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.91
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.91
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.91
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.91
PLN02187	462	rooty/superroot1	99.91
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	99.91
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.91
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	99.91
PRK06855	433	aminotransferase; Validated	99.91
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.91
PRK10534	333	L-threonine aldolase; Provisional	99.91
PRK09105	370	putative aminotransferase; Provisional	99.91
PRK13237	460	tyrosine phenol-lyase; Provisional	99.91
PTZ00377	481	alanine aminotransferase; Provisional	99.91
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	99.91
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.91
PRK03321	352	putative aminotransferase; Provisional	99.91
PRK09148	405	aminotransferase; Validated	99.91
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	99.91
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	99.91
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	99.9
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	99.9
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	99.9
PTZ00433	412	tyrosine aminotransferase; Provisional	99.9
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.9
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.9
PRK08175	395	aminotransferase; Validated	99.9
PRK09265	404	aminotransferase AlaT; Validated	99.9
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.9
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.9
PRK06107	402	aspartate aminotransferase; Provisional	99.9
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.9
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	99.9
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	99.9
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.9
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	99.89
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	99.89
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.89
PRK06836	394	aspartate aminotransferase; Provisional	99.89
PLN02231	534	alanine transaminase	99.89
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.89
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.89
PRK07568	397	aspartate aminotransferase; Provisional	99.89
PRK09275	527	aspartate aminotransferase; Provisional	99.89
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.89
PRK05367	954	glycine dehydrogenase; Provisional	99.88
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	99.88
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.88
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.88
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	99.88
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	99.88
PRK15029	755	arginine decarboxylase; Provisional	99.88
PRK07908	349	hypothetical protein; Provisional	99.88
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.88
PLN02672	1082	methionine S-methyltransferase	99.88
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	99.88
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	99.88
PRK05968	389	hypothetical protein; Provisional	99.88
PRK06767	386	methionine gamma-lyase; Provisional	99.88
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.88
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.88
PRK06358	354	threonine-phosphate decarboxylase; Provisional	99.88
PRK12566	954	glycine dehydrogenase; Provisional	99.88
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.88
PRK05839	374	hypothetical protein; Provisional	99.88
PRK08861	388	cystathionine gamma-synthase; Provisional	99.87
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.87
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	99.87
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.87
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	99.87
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	99.87
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.87
PRK04311	464	selenocysteine synthase; Provisional	99.87
PRK07811	388	cystathionine gamma-synthase; Provisional	99.87
PLN02880	490	tyrosine decarboxylase	99.86
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.86
PRK08776	405	cystathionine gamma-synthase; Provisional	99.86
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	99.86
PRK08064	390	cystathionine beta-lyase; Provisional	99.86
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.86
PRK06234	400	methionine gamma-lyase; Provisional	99.86
PRK08045	386	cystathionine gamma-synthase; Provisional	99.86
PLN02452	365	phosphoserine transaminase	99.86
PRK09257	396	aromatic amino acid aminotransferase; Provisional	99.86
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	99.85
PRK08574	385	cystathionine gamma-synthase; Provisional	99.85
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.85
PLN02242	418	methionine gamma-lyase	99.85
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.85
PRK07503	403	methionine gamma-lyase; Provisional	99.85
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.85
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	99.85
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.85
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.85
PLN02263	470	serine decarboxylase	99.85
PRK07269	364	cystathionine gamma-synthase; Reviewed	99.85
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.85
PRK07050	394	cystathionine beta-lyase; Provisional	99.84
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.84
PTZ00376	404	aspartate aminotransferase; Provisional	99.84
PLN02397	423	aspartate transaminase	99.84
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	99.84
PRK09028	394	cystathionine beta-lyase; Provisional	99.84
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.84
PRK08114	395	cystathionine beta-lyase; Provisional	99.84
PLN02590	539	probable tyrosine decarboxylase	99.84
PRK07505	402	hypothetical protein; Provisional	99.84
PRK13578	720	ornithine decarboxylase; Provisional	99.84
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.84
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	99.84
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.84
PRK08249	398	cystathionine gamma-synthase; Provisional	99.83
KOG1368	384	consensus Threonine aldolase [Amino acid transport	99.83
PRK15400	714	lysine decarboxylase CadA; Provisional	99.83
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.83
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.83
COG3844	407	Kynureninase [Amino acid transport and metabolism]	99.83
PLN02509	464	cystathionine beta-lyase	99.83
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.82
PRK15399	713	lysine decarboxylase LdcC; Provisional	99.82
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	99.82
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	99.82
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	99.82
PRK07582	366	cystathionine gamma-lyase; Validated	99.82
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	99.82
PRK07671	377	cystathionine beta-lyase; Provisional	99.82
PRK05939	397	hypothetical protein; Provisional	99.82
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	99.82
PRK06460	376	hypothetical protein; Provisional	99.81
PRK05967	395	cystathionine beta-lyase; Provisional	99.81
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.81
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	99.81
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.8
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	99.8
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	99.8
PRK06434	384	cystathionine gamma-lyase; Validated	99.8
PLN02368	407	alanine transaminase	99.8
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	99.8
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.8
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	99.8
PRK08354	311	putative aminotransferase; Provisional	99.8
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.79
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	99.79
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	99.79
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	99.79
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.79
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.79
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.79
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.78
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.78
PRK08637	388	hypothetical protein; Provisional	99.78
PRK07049	427	methionine gamma-lyase; Validated	99.77
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.77
PRK12462	364	phosphoserine aminotransferase; Provisional	99.77
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.76
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	99.75
PRK05367	954	glycine dehydrogenase; Provisional	99.74
PRK02627	396	acetylornithine aminotransferase; Provisional	99.74
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.74
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.73
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.73
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.71
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.71
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	99.71
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	99.71
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	99.7
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.69
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.67
PRK04260	375	acetylornithine aminotransferase; Provisional	99.66
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.64
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	99.64
PLN02624	474	ornithine-delta-aminotransferase	99.63
PLN00144	382	acetylornithine transaminase	99.62
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.62
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.6
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	99.59
KOG0634	472	consensus Aromatic amino acid aminotransferase and	99.59
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.57
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	99.56
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	99.56
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	99.56
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	99.56
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	99.55
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.55
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.55
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.55
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.54
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.53
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.53
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	99.53
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.52
PRK12403	460	putative aminotransferase; Provisional	99.52
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	99.52
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.52
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.51
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.5
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	99.5
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.49
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	99.49
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.48
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.48
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.48
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.48
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.48
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.47
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.46
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	99.46
PRK06541	460	hypothetical protein; Provisional	99.45
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	99.45
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	99.45
PRK06105	460	aminotransferase; Provisional	99.44
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	99.43
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.43
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.43
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.42
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	99.42
PRK06062	451	hypothetical protein; Provisional	99.41
PRK07046	453	aminotransferase; Validated	99.41
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	99.4
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	99.39
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.38
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	99.38
PRK07678	451	aminotransferase; Validated	99.37
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	99.37
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	99.37
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	99.35
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.34
PRK05965	459	hypothetical protein; Provisional	99.34
PRK07480	456	putative aminotransferase; Validated	99.33
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	99.33
PRK07482	461	hypothetical protein; Provisional	99.33
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.32
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.31
PRK06149	972	hypothetical protein; Provisional	99.31
PRK07481	449	hypothetical protein; Provisional	99.31
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	99.3
PRK07483	443	hypothetical protein; Provisional	99.29
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	99.29
PRK06917	447	hypothetical protein; Provisional	99.29
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	99.28
KOG0258	475	consensus Alanine aminotransferase [Amino acid tra	99.28
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	99.27
COG4100	416	Cystathionine beta-lyase family protein involved i	99.26
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	99.25
KOG0629	510	consensus Glutamate decarboxylase and related prot	99.24
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	99.24
PRK07036	466	hypothetical protein; Provisional	99.23
PRK06148	1013	hypothetical protein; Provisional	99.22
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	99.22
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	99.22
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	99.21
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	99.2
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	99.19
KOG3846	465	consensus L-kynurenine hydrolase [Amino acid trans	99.19
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	99.18
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	99.13
PRK12566	954	glycine dehydrogenase; Provisional	99.11
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	99.1
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	98.99
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	98.97
PRK08297	443	L-lysine aminotransferase; Provisional	98.82
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	98.79
KOG1403	452	consensus Predicted alanine-glyoxylate aminotransf	98.66
KOG1411	427	consensus Aspartate aminotransferase/Glutamic oxal	98.62
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	98.6
KOG1412	410	consensus Aspartate aminotransferase/Glutamic oxal	98.49
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	98.15
KOG2790	370	consensus Phosphoserine aminotransferase [Coenzyme	98.02
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	97.99
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	97.85
KOG3843	432	consensus Predicted serine hydroxymethyltransferas	97.62
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	97.24

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=4.7e-104  Score=713.71  Aligned_cols=446  Identities=69%  Similarity=1.131  Sum_probs=429.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC
Q 013217            1 MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN   80 (447)
Q Consensus         1 ~~~~~~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g   80 (447)
                      |.+.|||++++|++|.+||+.+|+||||||+++.+|++|++++++|+|+|||||.|||+|++++|++|.+|++|..+.|+
T Consensus        21 l~~~DPev~~ii~~Ek~RQ~~gieLIaSENFts~aVmeAlGS~ltNKYSEGyPG~RYYGGne~ID~iE~LCq~RALeaF~  100 (477)
T KOG2467|consen   21 LEEVDPEVHDIIEKEKERQKRGIELIASENFTSRAVMEALGSCLTNKYSEGYPGARYYGGNEYIDQIELLCQKRALEAFG  100 (477)
T ss_pred             hhhcChHHHHHHHHHHHhhhcceeEeecccchHHHHHHHHhHHhhcccccCCCcccccCcchHHHHHHHHHHHHHHHHhC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHH
Q 013217           81 LDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDM  160 (447)
Q Consensus        81 ~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~  160 (447)
                      ++++.|++|||+.||+.||++++.++++|+|+|+.+++++|||++|||++..++++....+|+..||.+|+.+|.||+|.
T Consensus       101 ldp~kWGVNVQp~SGSPANfavYtall~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~TG~IDYD~  180 (477)
T KOG2467|consen  101 LDPEKWGVNVQPYSGSPANFAVYTALLKPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPSTGYIDYDK  180 (477)
T ss_pred             CCHHHCceeeccCCCCchhhHHHhhhcCCCCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeCCCCCceehHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCc
Q 013217          161 LEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG  240 (447)
Q Consensus       161 l~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG  240 (447)
                      |++....++||+||++.|.|++.+|++++++||++.|+++++|+||.+|+++.++.++||.+||||++++||+|+|||||
T Consensus       181 Le~~A~~frPk~iiaG~SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey~DiVTTTTHKsLRGPRg~  260 (477)
T KOG2467|consen  181 LEKTATLFRPKLIIAGTSAYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEYCDIVTTTTHKSLRGPRGA  260 (477)
T ss_pred             HHHHHHhcCCcEEEeccccchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccccceeeccccccccCCcce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeecCCc---------chhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC
Q 013217          241 MIFFKKDPV---------LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL  311 (447)
Q Consensus       241 ~i~~~~~~~---------~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  311 (447)
                      +|+.+++..         +.+++.++|+.++||+.||+||+|.|+++|+||+++.+++|++|.+++.+|++.|+++|.+.
T Consensus       261 mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l~~~  340 (477)
T KOG2467|consen  261 MIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASALISR  340 (477)
T ss_pred             eEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999998632         35789999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217          312 GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  391 (447)
Q Consensus       312 g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i  391 (447)
                      |++++++|||+|+++||+++.|+++..+++.|+..+|.+|++++|||.++..++|||+|++++|+||+.|+|+++++++|
T Consensus       341 Gy~lvtgGTDnHlvLvDLr~~G~dGarvE~vle~~~I~~NKNtvpGD~Sal~PgGiRiGtPAmTsRG~~e~df~~v~~fi  420 (477)
T KOG2467|consen  341 GYKLVTGGTDNHLVLVDLRPKGVDGARVEKVLELCHIALNKNTVPGDKSALSPGGIRIGTPAMTSRGFGEEDFEKVADFI  420 (477)
T ss_pred             CceEecCCccceEEEEeccccCCchHHHHHHHHHhhhhhcCCcCCCCccccCCCceeccchhhcccCccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccccchhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCCC
Q 013217          392 HEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV  447 (447)
Q Consensus       392 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~~~  447 (447)
                      .++++....+|...++++++||++.+.++. ...+.+.++|++|.+|+.+||+|+|
T Consensus       421 ~~av~i~~~~~~~~~~~~lkdf~~~~~~~~-~~~~~v~~Lr~~Ve~fa~~fp~pg~  475 (477)
T KOG2467|consen  421 DRAVKIALEIQKEAGGKKLKDFKKFLSENK-VMSEEVAELRKRVEEFAGQFPMPGF  475 (477)
T ss_pred             HHHHHHHHHHHhhcccchHHHHHHHhccCc-hhHHHHHHHHHHHHHHHhcCCCCCC
Confidence            999999999998887799999999987543 2235788999999999999999986

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=5.4e-100  Score=700.43  Aligned_cols=405  Identities=55%  Similarity=0.856  Sum_probs=391.2

Q ss_pred             CCCCHHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC
Q 013217            2 QACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL   81 (447)
Q Consensus         2 ~~~~~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~   81 (447)
                      .+.||+|+++|.+|..||+++|+||||||++|++|++|+++.|+|+|+|||||.|||+||+++|++|.+|+++++++||+
T Consensus         8 ~~~d~~i~~~i~~e~~rq~~~ieLIASEN~~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga   87 (413)
T COG0112           8 ADYDPEIFEAIQQELERQREHIELIASENFTSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGA   87 (413)
T ss_pred             HhcCHHHHHHHHHHHHHHhhceeeeeccccCCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCC
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHH
Q 013217           82 DENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDML  161 (447)
Q Consensus        82 ~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l  161 (447)
                      +.    +||||+||++||.+++.+|++|||+|+.+++.||||++|+.     +++++|.+|++++|++|++++.||+|++
T Consensus        88 ~~----anVQPhSGs~AN~av~~All~pGDtimgm~l~~GGHltHg~-----~v~~sG~~~~~v~Y~vd~et~~IDyD~~  158 (413)
T COG0112          88 EY----ANVQPHSGSQANQAVYLALLQPGDTIMGLDLSHGGHLTHGS-----PVNFSGKLFNVVSYGVDPETGLIDYDEV  158 (413)
T ss_pred             Cc----cccCCCCchHHHHHHHHHHcCCCCeEecccCCCCCcccCCC-----CCCccceeEEeEecccccccCccCHHHH
Confidence            97    69999999999999999999999999999999999999994     6789999999999999999999999999


Q ss_pred             HHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCce
Q 013217          162 EKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGM  241 (447)
Q Consensus       162 ~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG~  241 (447)
                      ++.+.++|||+|+++.|.|++.+|++++++||+++|++|++|+||.+|+++.|.+++|+++||++++|+||||+|||||+
T Consensus       159 ~k~a~e~kPK~ii~G~SaY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~AdvVTtTTHKTlrGPrGG~  238 (413)
T COG0112         159 EKLAKEVKPKLIIAGGSAYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPHADVVTTTTHKTLRGPRGGI  238 (413)
T ss_pred             HHHHHHhCCCEEEECccccccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCccceEeCCcccCCCCCCceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCC
Q 013217          242 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSD  321 (447)
Q Consensus       242 i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~  321 (447)
                      |+++++     ++.+++++++||+.||+|++|.|||+++|++++++++|++|.+++.+|++.|++.|.+.|+++++++|+
T Consensus       239 Il~~~e-----el~kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~G~~vvsGgTd  313 (413)
T COG0112         239 ILTNDE-----ELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKERGFKVVSGGTD  313 (413)
T ss_pred             EEeccH-----HHHHHhhhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHcCCeEecCCcc
Confidence            999985     899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC-CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHHHH
Q 013217          322 NHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLE  400 (447)
Q Consensus       322 ~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~-~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~~  400 (447)
                      +|++++|+++.++++..++..|++.||.+|+|.+|+|+ +|+.++|||||++++|+|||+++||++++++|.+++.... 
T Consensus       314 nHl~lVDl~~~~~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~~~~-  392 (413)
T COG0112         314 NHLVLVDLRSKGLTGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLDGLK-  392 (413)
T ss_pred             ceEEEEEcccCCCCHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHhccc-
Confidence            99999999977889999999999999999999999997 7899999999999999999999999999999999998531 


Q ss_pred             HHHhhccccchhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCC
Q 013217          401 AKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG  446 (447)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~~  446 (447)
                                               ...+++|++|.+||++||++.
T Consensus       393 -------------------------~~~~~vk~~V~~l~~~fp~y~  413 (413)
T COG0112         393 -------------------------DVPAEVKEEVAELCRRFPLYK  413 (413)
T ss_pred             -------------------------hhHHHHHHHHHHHHHhCCCCC
Confidence                                     157899999999999999974

>PLN02271 serine hydroxymethyltransferase

Probab=100.00  E-value=4.6e-92  Score=688.15  Aligned_cols=441  Identities=56%  Similarity=0.983  Sum_probs=411.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC
Q 013217            1 MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN   80 (447)
Q Consensus         1 ~~~~~~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g   80 (447)
                      |++.||||+++|.+|.+||+++|+||||||++|++|++++++.++|+|++||||.|||+|++++|++|..|+++++++||
T Consensus       129 l~~~Dpei~~li~~E~~rQ~~~l~LIASEN~~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~  208 (586)
T PLN02271        129 LPEADPDIHELMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFG  208 (586)
T ss_pred             HhhhCHHHHHHHHHHHHHHhcCeeeccccccCCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhC
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccc-cccccccceeEEEecccCCCCCCCCHH
Q 013217           81 LDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPK-RRVSGTSIYFESMPYRLDESTGLVDYD  159 (447)
Q Consensus        81 ~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~id~~  159 (447)
                      +++++|++|||+.||+.||.+++.++++|||+|+.++++||||++|+++... ..++.+|..+++++|++|++++.+|+|
T Consensus       209 ~~~~~~gaNVQp~SGs~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd  288 (586)
T PLN02271        209 LDSEKWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYD  288 (586)
T ss_pred             CcccccccceeeccHHHHHHHHHHHhcCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEcccccccCccCHH
Confidence            9998998999999999999999999999999999999999999999875421 356778888999999998888999999


Q ss_pred             HHHHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC
Q 013217          160 MLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG  239 (447)
Q Consensus       160 ~l~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g  239 (447)
                      ++++.+..++||+|+++.+.|++.+|+++|++||+++|+++++|++|++|+++.+.+++|++++|++++|+||||+||+|
T Consensus       289 ~lek~a~~~rPKLII~g~Saypr~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~~aDvvt~TTHKtLrGPrG  368 (586)
T PLN02271        289 KLEEKALDFRPKILICGGSSYPREWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSLRGPRG  368 (586)
T ss_pred             HHHHHhhhcCCeEEEECchhccCcCCHHHHHHHHHHcCCEEEEECcccccccccCcCCCCCcCCcEEEeCCcccCCCCCc
Confidence            99997767799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEeecCCc--------------chhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHH
Q 013217          240 GMIFFKKDPV--------------LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA  305 (447)
Q Consensus       240 G~i~~~~~~~--------------~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~  305 (447)
                      |+|+++++..              ..+++.++++.++||+++|+|+++.+||++++++++..++|++|.+++.+|++.|+
T Consensus       369 G~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~~efk~Ya~QVv~NAkaLA  448 (586)
T PLN02271        369 GIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQALA  448 (586)
T ss_pred             eEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence            9999976411              12468899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHH
Q 013217          306 SRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFV  385 (447)
Q Consensus       306 ~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~  385 (447)
                      +.|.+.|+++++++|++|++++|+++.++++..+++.|++.||.+|++.+|++.+++.+++||||++++|+|||.++||+
T Consensus       449 ~~L~~~G~~vv~ggTdnHlvLvDl~~~g~~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~psGiRiGT~alT~rG~~e~d~~  528 (586)
T PLN02271        449 SALLRRKCRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTSRGCLESDFE  528 (586)
T ss_pred             HHHHHCCCeEeeCCCCcceeeecCcccCCCHHHHHHHHHHcCeEeccccCCCCCCCCCCCcccccCHHHHhcCCCcHHHH
Confidence            99999999999999999999999999899999999999999999999999999888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccchhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCCC
Q 013217          386 AIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV  447 (447)
Q Consensus       386 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~~~  447 (447)
                      +++++|.++++....+|.+. |+++++|++.+.++     +.++++|++|.+||++||+|+|
T Consensus       529 ~iA~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~i~~l~~~V~~~~~~fp~p~~  584 (586)
T PLN02271        529 TIADFLLRAAQIASAVQREH-GKLQKEFLKGLQNN-----KDIVELRNRVEAFASQFAMPGF  584 (586)
T ss_pred             HHHHHHHHHHhhhhhhhhhc-chhhhhhhhccCCH-----HHHHHHHHHHHHHHHhCCCCCC
Confidence            99999999999887777765 56778888777653     3789999999999999999974

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=100.00  E-value=4.2e-86  Score=633.31  Aligned_cols=391  Identities=57%  Similarity=0.959  Sum_probs=330.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC
Q 013217            1 MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN   80 (447)
Q Consensus         1 ~~~~~~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g   80 (447)
                      |++.||||+++|++|.+||+++|+|+||||++||.|++++++.++|+|++||||.|||+|++++|++|..++++++++||
T Consensus         1 l~~~d~ei~~li~~e~~rq~~~l~LiaSEN~~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~   80 (399)
T PF00464_consen    1 LKEFDPEIYELIEKEEERQRSTLNLIASENYMSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFG   80 (399)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHSEE-CTT-----HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT
T ss_pred             CcccCHHHHHHHHHHHHHHhcCccccCcccccCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHH
Q 013217           81 LDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDM  160 (447)
Q Consensus        81 ~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~  160 (447)
                      +++++|.+||++.||+.||++++.+|++|||+|+.+++.+|||++|++....+++..+|.++++++|++|++++.||+|+
T Consensus        81 ~~~~~w~anvqp~SGs~An~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~  160 (399)
T PF00464_consen   81 AEPKEWYANVQPHSGSQANLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDE  160 (399)
T ss_dssp             -STTTEEEE---SSHHHHHHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHH
T ss_pred             CCcccceEEeecCCchHHHHHHHHHHHhhcCcEEecChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHH
Confidence            99999999999999999999999999999999999999999999999866555566688899999999999899999999


Q ss_pred             HHHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCc
Q 013217          161 LEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG  240 (447)
Q Consensus       161 l~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG  240 (447)
                      +++++++++||+|+++.|+|++.+|++++++||+++|++|++|++|.+|+++.+.+++|+++||++++||||+|+|||||
T Consensus       161 l~~~a~~~kPklIi~G~S~y~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~ADvvt~sThKtl~GPrgg  240 (399)
T PF00464_consen  161 LEKLAKEHKPKLIICGASSYPRPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPYADVVTGSTHKTLRGPRGG  240 (399)
T ss_dssp             HHHHHHHH--SEEEEE-SSTSS---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCTSSEEEEESSGGG-SSS-E
T ss_pred             HHHHHhhcCCCEEEECchhccCccCHHHHHHHHHhcCcEEEecccccccceehheecCccccceEEEeeccccccccCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeecCC--------cchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCC
Q 013217          241 MIFFKKDP--------VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG  312 (447)
Q Consensus       241 ~i~~~~~~--------~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  312 (447)
                      +|+++++.        ...+++.+++++.+||+.+|+|+++.++|++++++++.++.|++|.+++++|++.|++.|.+.|
T Consensus       241 iI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G  320 (399)
T PF00464_consen  241 IILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQERG  320 (399)
T ss_dssp             EEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            99999210        0113899999999999999999999999999999999988899999999999999999999999


Q ss_pred             cEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217          313 YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  391 (447)
Q Consensus       313 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i  391 (447)
                      +++++++|++|++++|++..++++.++++.|+++||.+|++.+|++.+++.+++|||||+++|+|||+++||++++++|
T Consensus       321 ~~v~~ggTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~vnkn~iP~d~~~~~~sGlRlGT~~lT~rG~~e~dm~~iA~~I  399 (399)
T PF00464_consen  321 FKVVTGGTDNHQVLVDLRSFGIDGKEAEKALEEAGIIVNKNTIPGDRSPFVPSGLRLGTPALTRRGMKEEDMKEIAELI  399 (399)
T ss_dssp             -EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTTSTTTT-SEEEEESHHHHHTT--HHHHHHHHHHH
T ss_pred             cEEEECCCCCCeEEEEecccccchHHHHHHHHhcCeeecccccCCCCCCCCCCEEEECCHHHHhCCCCHHHHHHHHhhC
Confidence            9999999999999999988889999999999999999999999999878889999999999999999999999999986

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=100.00  E-value=3.3e-76  Score=588.46  Aligned_cols=444  Identities=71%  Similarity=1.164  Sum_probs=396.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC
Q 013217            1 MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN   80 (447)
Q Consensus         1 ~~~~~~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g   80 (447)
                      |++.||||+++|.+|.+||+++|+||||||++|+.|++++.+.++++|++||||.|||+|+++++++|+.|+++++++|+
T Consensus        15 ~~~~d~~~~~~i~~e~~~q~~~l~liasen~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~   94 (475)
T PLN03226         15 LEEVDPEIADIIEKEKRRQWKGLELIASENFTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFR   94 (475)
T ss_pred             hhhcCHHHHHHHHHHHHHHHcCeeEecCCccCCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHH
Q 013217           81 LDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDM  160 (447)
Q Consensus        81 ~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~  160 (447)
                      .+.+.|.+|++++||+.||.+++.++++|||+|++++..++||++|++......++..+..+++++|.++++++.+|+++
T Consensus        95 ~~~~~~~~nv~~~SG~~AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~  174 (475)
T PLN03226         95 LDPEKWGVNVQPLSGSPANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDYDK  174 (475)
T ss_pred             CCcceeEEecCcCchHHHHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCCCCCcCHHH
Confidence            99888888999999999999999999999999999999999999998643322344556667777888888889999999


Q ss_pred             HHHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCc
Q 013217          161 LEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG  240 (447)
Q Consensus       161 l~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG  240 (447)
                      |++++.+++|++|+++.++|+...|+++|+++|+++|+++++|+||++|+++.+..++|++++|++++|+||||+||+||
T Consensus       175 Le~~l~~~~pklIv~~~S~~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~~~Div~~t~hK~L~GP~Gg  254 (475)
T PLN03226        175 LEKKAMLFRPKLIIAGASAYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEYCDVVTTTTHKSLRGPRGG  254 (475)
T ss_pred             HHHHHhhcCCeEEEEecCcCCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCCCCeEEEecCcccccCCCce
Confidence            99999877899988877889999999999999999999999999999999999888888889999999999999999999


Q ss_pred             eEEeecCCc--------chhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCC
Q 013217          241 MIFFKKDPV--------LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG  312 (447)
Q Consensus       241 ~i~~~~~~~--------~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  312 (447)
                      +|+++++..        .+.++.+.++...+++++|+|+++.++++++|++++...+++++.+++.+|+++|++.|.+.|
T Consensus       255 ~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~G  334 (475)
T PLN03226        255 MIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMSKG  334 (475)
T ss_pred             EEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999976311        011344467777888889999999999999999999888899999999999999999999999


Q ss_pred             cEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHH
Q 013217          313 YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH  392 (447)
Q Consensus       313 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~  392 (447)
                      ++++.+++++|++++++.+.++++.++.+.|++.||.++++.+|++..++.+++||+|++.+|+||++++||++++++|.
T Consensus       335 ~~l~~~~t~~hi~lv~~~~~gi~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~  414 (475)
T PLN03226        335 YKLVTGGTDNHLVLWDLRPLGLTGSRVEKVLDLAHITLNKNAVPGDSSALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLH  414 (475)
T ss_pred             CEEEcCCCCCCEEEEEccCCCCCHHHHHHHHHHCCCEECCCCCCCCcccCCCCCcccCcHHHHHCCCCHHHHHHHHHHHH
Confidence            99998888899999999888889999999999999999999999887788889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccchhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCCC
Q 013217          393 EGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV  447 (447)
Q Consensus       393 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~~~  447 (447)
                      ++++.....+.++ ++++++|...+..+..  .+.++++|++|.+||++||+|++
T Consensus       415 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~fp~~~~  466 (475)
T PLN03226        415 RAVTIALKIQKEH-GKKLKDFKKGLESNDF--SKDIEALRAEVEEFATSFPMPGF  466 (475)
T ss_pred             HHHHHhhhhhhhc-ccchhhhhhhcccccc--HHHHHHHHHHHHHHHHhCCCCCC
Confidence            9999887777665 5677777554433210  14689999999999999999864

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=100.00  E-value=1.9e-76  Score=578.14  Aligned_cols=421  Identities=42%  Similarity=0.707  Sum_probs=375.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC
Q 013217            1 MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN   80 (447)
Q Consensus         1 ~~~~~~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g   80 (447)
                      |++.||||+++|.+|.+||+++|+||||||++|+.|++++++.++|+|++||||.|||+|++++|++|..+.++++++||
T Consensus        30 l~~~d~~~~~~~~~e~~rq~~~l~LiasEN~~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~  109 (493)
T PRK13580         30 ILHVEPRIAEAIRQELADQRSSLKLIASENYSSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFG  109 (493)
T ss_pred             HHhhCHHHHHHHHHHHHHHhcCceEecccccCCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhC
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccceeeecCCcHHHHHHHHHHhcCC-------------------------------CCEEEEecCCCCcccCCCcc
Q 013217           81 LDENKWGVNVQPLSGSPANFEVYTAILKP-------------------------------HDRIMGLDLPHGGHLSHGFM  129 (447)
Q Consensus        81 ~~~~~~~~~v~~~sGs~a~~~~~~al~~p-------------------------------gd~Vl~~~~~~~~~~~~~~~  129 (447)
                      +++    +|||+.||+.||.+++.++++|                               ||+|+.+++.+|||++|++ 
T Consensus       110 a~~----anvqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~-  184 (493)
T PRK13580        110 AEH----AYVQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGF-  184 (493)
T ss_pred             CCc----ccccCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCc-
Confidence            998    6999999999999999999987                               8999999999999999996 


Q ss_pred             ccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehhhhcc
Q 013217          130 TPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISG  209 (447)
Q Consensus       130 ~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g  209 (447)
                          ..++++..+++++|+++++++.+|++++++++.+++|++++++.|++++..|+++|+++|+++|+++++|+||++|
T Consensus       185 ----~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~~~~plvii~g~S~~~~~~dl~~i~eia~~~gA~L~VD~AH~~G  260 (493)
T PRK13580        185 ----RPNISGKMFHQRSYGVDPDTGLLDYDEIAALAREFKPLILVAGYSAYPRRVNFAKLREIADEVGAVLMVDMAHFAG  260 (493)
T ss_pred             ----ccchhhheeeeEecccCcccCccCHHHHHHHHhhcCCEEEEeCccccCCCcCHHHHHHHHHHcCCEEEEECchhhc
Confidence                4567888899999999987899999999999998677777778899988999999999999999999999999999


Q ss_pred             ccccccCC---CCCCcccEEEeCCCcccCCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc
Q 013217          210 LVAASVVA---DPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ  286 (447)
Q Consensus       210 ~~~~~~~~---~~~~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~  286 (447)
                      ++..+..+   +|+.++||+++|+||||+||+||+|++++      ++.+.++.. .|+++|+|+++.+++.++++.++.
T Consensus       261 ligg~~~~~~~~~~~~~D~vtgT~hKaL~GP~GG~I~~~~------~l~~~L~~a-~P~i~gg~l~p~iAA~avAl~e~~  333 (493)
T PRK13580        261 LVAGKVFTGDEDPVPHADIVTTTTHKTLRGPRGGLVLAKK------EYADAVDKG-CPLVLGGPLPHVMAAKAVALAEAR  333 (493)
T ss_pred             eeccccchhhcCCCCCCcEEEeCChhhccCCCeEEEEecH------HHHHHHhhC-CCcccCCCccHHHHHHHHHHHHHh
Confidence            99876654   56668999999999999999999999998      788888766 488899999999999999999998


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC-CCCCCC
Q 013217          287 SPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPG  365 (447)
Q Consensus       287 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~-~~~~~~  365 (447)
                      +++++++++++.+|+++|++.|.+.|++++.+++++|++++++.+.+.++..+.+.|+++||.++++..|.++ +++.++
T Consensus       334 ~~ef~~y~~~l~~Na~~La~~L~~~G~~vv~ggTdshIV~V~lg~~~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~s  413 (493)
T PRK13580        334 TPEFQKYAQQVVDNARALAEGFLKRGARLVTGGTDNHLVLIDVTSFGLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTS  413 (493)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCCCEEEEEeCCHHHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCc
Confidence            7778899999999999999999999999887778999999999876666678889999999999999899876 556788


Q ss_pred             eEEEecCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCC
Q 013217          366 GIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIP  445 (447)
Q Consensus       366 ~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~  445 (447)
                      +||||++++|+||++++||++++++|.++++.....+.. .|+++++  +...+ +    ..++++|++|.+||++||++
T Consensus       414 rLRIg~~A~ttrg~teedi~~iad~l~~~l~~~~~~~~~-~~~~~~~--~~~~~-~----~~~~~~~~~v~~~~~~~p~~  485 (493)
T PRK13580        414 GIRLGTPALTTLGMGSDEMDEVAELIVKVLSNTTPGTTA-EGAPSKA--KYELD-E----GVAQEVRARVAELLARFPLY  485 (493)
T ss_pred             eEEeccchhhhcCCCHHHHHHHHHHHHHHHHhhhhcccc-ccccccc--cccCC-H----HHHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999999998765322222 2444343  22222 2    36889999999999999983

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=100.00  E-value=1.6e-66  Score=521.74  Aligned_cols=438  Identities=63%  Similarity=1.073  Sum_probs=376.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC
Q 013217            1 MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN   80 (447)
Q Consensus         1 ~~~~~~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g   80 (447)
                      |++.|||++++|.+|.+||+++|+|+||||++||.|++++.+.++++|++|+|+++|+.|++..+.+|+.++++++++||
T Consensus        15 ~~~~d~~~~~~~~~~~~~~~~~l~l~~sen~~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~   94 (452)
T PTZ00094         15 LKEADPELYELIEKEKERQIEGLELIASENFTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFG   94 (452)
T ss_pred             HhhhCHHHHHHHHHHHHHHHcCeeEecccccCCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999889999999999


Q ss_pred             CCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHH
Q 013217           81 LDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDM  160 (447)
Q Consensus        81 ~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~  160 (447)
                      +++++|.++++++||++||.+++.++++|||+|++...+|+++++++...........+..+++.++++++ ++.+|+++
T Consensus        95 a~~~~~~~~~~~~sgt~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~-~g~id~~~  173 (452)
T PTZ00094         95 LDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNE-KGLIDYDK  173 (452)
T ss_pred             CCcccceeecCCCchHHHHHHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccCC-CCCcCHHH
Confidence            99888878888899999999999999999999999999999999877533222233445556777777774 48999999


Q ss_pred             HHHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCc
Q 013217          161 LEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG  240 (447)
Q Consensus       161 l~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG  240 (447)
                      +++++++++|++|+++.++++...|+++|.++|+++|+++++|++|++|+++.+..+.++.++|++++|+||||+||+||
T Consensus       174 L~~~l~~~~~~lvi~~~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~~~D~l~~S~hK~l~GP~Gg  253 (452)
T PTZ00094        174 LEELAKAFRPKLIIAGASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLRGPRSG  253 (452)
T ss_pred             HHHHHHHhCCCEEEEeCCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCCCCcEEEcCCccCCCCCCce
Confidence            99999776899988877778889999999999999999999999999999988877777778999999999999999999


Q ss_pred             eEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCC
Q 013217          241 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS  320 (447)
Q Consensus       241 ~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~  320 (447)
                      +++++++..  ..+...++...+|.+.|+++...++++++|++++...+++++.+++.+++++|.+.|.+.|+++..+++
T Consensus       254 ~l~~~~~~~--~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~g~~v~~~~~  331 (452)
T PTZ00094        254 LIFYRKKVK--PDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKRGYDLVTGGT  331 (452)
T ss_pred             EEEEecccc--hHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhCCcEEecCCC
Confidence            999976311  023345555667778899999999999999999877788889999999999999999888999887555


Q ss_pred             CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHHHH
Q 013217          321 DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLE  400 (447)
Q Consensus       321 ~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~~  400 (447)
                      ++|..++++...++++..+...|+++||.++...+|++..+..+++||+|++.+|++|++++||++++++|.+++.....
T Consensus       332 ~~~~~~v~~~~~~~~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~~~~~~  411 (452)
T PTZ00094        332 DNHLVLVDLRPFGITGSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVKLAQE  411 (452)
T ss_pred             CCceEeecCCcCCCCHHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            56777888877788889999999999999988778877655667899999999999999999999999999999998776


Q ss_pred             HHHhhccccchhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCCC
Q 013217          401 AKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV  447 (447)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~~~  447 (447)
                      +++++ +++..+|.+...+.     .+++++|++|.+||++||+|++
T Consensus       412 ~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~  452 (452)
T PTZ00094        412 IQKQV-GKKLVDFKKALEKN-----PELQKLRQEVVEFASQFPFPGI  452 (452)
T ss_pred             hhhhc-ccchhhhhhhcccH-----HHHHHHHHHHHHHHHhCCCCCC
Confidence            66655 44444444333222     4789999999999999999985

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=100.00  E-value=4.4e-57  Score=447.99  Aligned_cols=407  Identities=56%  Similarity=0.875  Sum_probs=346.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC
Q 013217            1 MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN   80 (447)
Q Consensus         1 ~~~~~~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g   80 (447)
                      |+++||||+++|.+|.++|+++|+|++|||+++|.|++++.+.+.++|+.|++|+|+++|++..+++|+.+++++++++|
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~l~~sen~~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g   88 (416)
T PRK13034          9 LEEYDDEVFAAINKELERQQDHLELIASENFTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFG   88 (416)
T ss_pred             HhhhCHHHHHHHHHHHHHHhcCeeecccccCCCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhC
Confidence            46899999999999999999999999999999999999999998899999999999999999999999888899999999


Q ss_pred             CCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHH
Q 013217           81 LDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDM  160 (447)
Q Consensus        81 ~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~  160 (447)
                      .+.    +++.+.||+.||.+++.++++|||+|++....|++++..+.     .....+..++.+.+++++.++.+|+++
T Consensus        89 ~~~----alv~~~SG~~A~~~~l~al~~~GD~Vl~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~d~~~  159 (416)
T PRK13034         89 CDY----ANVQPHSGSQANGAVYLALLKPGDTILGMSLSHGGHLTHGA-----KVSLSGKWYNAVQYGVDRLTGLIDYDE  159 (416)
T ss_pred             CCc----eEEecCCcHHHHHHHHHHhcCCCCEEEEcCccceeeeecCC-----cceeccceeeeEEcccccccCCcCHHH
Confidence            986    45666899999999999999999999999999988765442     112234444445677776678899999


Q ss_pred             HHHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCc
Q 013217          161 LEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG  240 (447)
Q Consensus       161 l~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG  240 (447)
                      +++.+...+||+|+++.+.++...|+++|.++|+++|+++++|++|+.|.+..+....++.++|++++|+||+|+||.||
T Consensus       160 le~~l~~~~~klVi~~~~~~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~~~~Di~~~s~~K~l~g~~GG  239 (416)
T PRK13034        160 VEELAKEHKPKLIIAGFSAYPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTLRGPRGG  239 (416)
T ss_pred             HHHHHhhcCCeEEEECCCccccccCHHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCCCCceEEEEeCcccCCCCCCe
Confidence            99988666899999877778888899999999999999999999999999888776666667999999999999999999


Q ss_pred             eEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCC
Q 013217          241 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS  320 (447)
Q Consensus       241 ~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~  320 (447)
                      +++++++     ++.++++...+++++++++.+.+++.+.++.++...+..++.+++.+|+++|++.|.+.|+++..+++
T Consensus       240 ~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~G~~~~~~~~  314 (416)
T PRK13034        240 MILTNDE-----EIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKERGYDLVSGGT  314 (416)
T ss_pred             EEEECcH-----HHHHHHHhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHcCCEeccCCC
Confidence            9988774     56667777677776777778788888878877665555678899999999999999999999875446


Q ss_pred             CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC-CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHHH
Q 013217          321 DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITL  399 (447)
Q Consensus       321 ~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~-~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~  399 (447)
                      +++.+++++...+.+...+.+.|+++||.++....|++. .|..+++||+|++++|++|++++|+++++++|++++... 
T Consensus       315 ~t~i~~v~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~~~-  393 (416)
T PRK13034        315 DNHLLLVDLRPKGLSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLDDL-  393 (416)
T ss_pred             CCcEEEEEcCCCCCCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHhcC-
Confidence            789888988777777788889999999999987778754 556678999999999999999999999999999997721 


Q ss_pred             HHHHhhccccchhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCC
Q 013217          400 EAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIP  445 (447)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~  445 (447)
                                        ++ .    +.+++||++|.+|+++||++
T Consensus       394 ------------------~~-~----~~~~~~~~~~~~~~~~~~~~  416 (416)
T PRK13034        394 ------------------GN-A----ALEQRVRKEVKALCSRFPIY  416 (416)
T ss_pred             ------------------CC-H----HHHHHHHHHHHHHHHhCCCC
Confidence                              11 1    25789999999999999974

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=100.00  E-value=3.2e-52  Score=416.28  Aligned_cols=408  Identities=54%  Similarity=0.851  Sum_probs=337.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC
Q 013217            1 MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN   80 (447)
Q Consensus         1 ~~~~~~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g   80 (447)
                      |++.|||++++|+++.+++++.|+|++++|++|+.|++++...+.++|..|+++++++.|.+..+.+|+.+++++++++|
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g   85 (416)
T PRK00011          6 LAEYDPEIADAIEQELKRQEEHIELIASENFVSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFG   85 (416)
T ss_pred             hhhcCHHHHHHHHHHHHHHhcCeeeecccCcCCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhC
Confidence            57899999999999999999999999999999999999999888888888999999998988999999888899999999


Q ss_pred             CCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHH
Q 013217           81 LDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDM  160 (447)
Q Consensus        81 ~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~  160 (447)
                      ++++    +|.++||++|+..++.++++|||+|++++++|+++++++.     ...+.+.+.+++.++++++++.+|+++
T Consensus        86 ~~~~----~i~~~sgt~al~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~d~~~  156 (416)
T PRK00011         86 AEYA----NVQPHSGSQANAAVYFALLKPGDTILGMDLAHGGHLTHGS-----PVNFSGKLYNVVSYGVDEETGLIDYDE  156 (416)
T ss_pred             CCce----eeecCCchHHHHHHHHHhcCCCCEEEEeccccCCcccccc-----ccccccceeeEeecCcCcccCCcCHHH
Confidence            9864    4555889999999999999999999999999988765442     112233345666777765568899999


Q ss_pred             HHHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCc
Q 013217          161 LEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG  240 (447)
Q Consensus       161 l~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG  240 (447)
                      +++++++++|++|+++.++++...|+++|.++|+++|+++++|++|+.|.+..+..+.++.++|++++|+||+|+||+||
T Consensus       157 l~~~i~~~~~k~v~~~~~~~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~~~di~~~S~~K~l~g~~gg  236 (416)
T PRK00011        157 VEKLALEHKPKLIIAGASAYSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVPHADVVTTTTHKTLRGPRGG  236 (416)
T ss_pred             HHHHHHhcCCCEEEECCCcCCCccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCCCCcEEEecCCcCCCCCCce
Confidence            99999766899999977778777899999999999999999999999888765544444557899999999999999999


Q ss_pred             eEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCC
Q 013217          241 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS  320 (447)
Q Consensus       241 ~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~  320 (447)
                      +++++++     ++.+++.....++..+++....++++..++..+...+++++.+++.++++++++.|.+.|+++...++
T Consensus       237 ~i~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~  311 (416)
T PRK00011        237 LILTNDE-----ELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAERGFRVVSGGT  311 (416)
T ss_pred             EEEeCCH-----HHHHHHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCeeeecCC
Confidence            9999753     67787776666666677777778887777766665566888999999999999999999988765334


Q ss_pred             CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC-CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHHH
Q 013217          321 DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITL  399 (447)
Q Consensus       321 ~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~-~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~  399 (447)
                      .++++++.+.+.+++..++.+.|.++||.++....|.+. .++.+.++|+++..+++++++++|++++++.|++++....
T Consensus       312 ~~~~~~i~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~~~~~  391 (416)
T PRK00011        312 DNHLVLVDLRSKGLTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVLDNPD  391 (416)
T ss_pred             CCeEEEEeCcccCCCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHHHHHHHHHhccC
Confidence            568888887655556788999999999999866555542 3445668999998889999999999999999998876421


Q ss_pred             HHHHhhccccchhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCC
Q 013217          400 EAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG  446 (447)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~~  446 (447)
                                         +++     .+++++++|.+|+++||.+.
T Consensus       392 -------------------~~~-----~~~~~~~~~~~~~~~~~~~~  414 (416)
T PRK00011        392 -------------------DEA-----VIEEVKEEVKELCKRFPLYK  414 (416)
T ss_pred             -------------------cch-----hHHHHHHHHHHHHHhCCCCC
Confidence                               112     57899999999999999754

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=100.00  E-value=9.4e-49  Score=389.93  Aligned_cols=384  Identities=62%  Similarity=0.971  Sum_probs=318.7

Q ss_pred             CCCCHHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC
Q 013217            2 QACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL   81 (447)
Q Consensus         2 ~~~~~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~   81 (447)
                      .++|+|++++|.+|..+|+++|+|++++|+++|.|++++...+..+|..|+|+.++|+|.+..+.+++.+++++++++|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~   80 (402)
T cd00378           1 ADVDPEIAEIIKKENERQRETLELIASENFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGA   80 (402)
T ss_pred             CCcCHHHHHHHHHHHHHHHhCeeeeccCCcCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCC
Confidence            36899999999999999999999999999999999999999888899999999999999999999998888899999999


Q ss_pred             CCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHH
Q 013217           82 DENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDML  161 (447)
Q Consensus        82 ~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l  161 (447)
                      +..    +|.++||++|+..++.++++|||+|++.++.|+++++++...   .+...|..+..++++.+++++.+|++++
T Consensus        81 ~~~----~v~~~sgt~a~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~id~~~l  153 (402)
T cd00378          81 EYA----NVQPHSGSQANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFT---KVSASGKLFESVPYGVDPETGLIDYDAL  153 (402)
T ss_pred             Cce----eeecCCcHHHHHHHHHHhcCCCCEEEEecCccCccccccccc---cccccceeEEEecCCcCcccCCcCHHHH
Confidence            863    456688999999999999999999999999999887654321   1334454445555554433688999999


Q ss_pred             HHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCce
Q 013217          162 EKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGM  241 (447)
Q Consensus       162 ~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG~  241 (447)
                      ++++...+|++|+++.+++|...|+++|.++|+++|+++++|++|+.|++..+..+.++.++|++++|+||+|+||+||+
T Consensus       154 ~~~i~~~~~~~v~~~~~~~~~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~~~dv~~~s~sK~l~G~~gg~  233 (402)
T cd00378         154 EKMALEFKPKLIVAGASAYPRPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLPGADVVTTTTHKTLRGPRGGL  233 (402)
T ss_pred             HHHHHhCCCCEEEecCcccCCCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCcccCCcEEEeccccCCCCCCceE
Confidence            99997558999998888888878999999999999999999999988887655444444468999999999999999999


Q ss_pred             EEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCC
Q 013217          242 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSD  321 (447)
Q Consensus       242 i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~  321 (447)
                      ++++++     ++.+++.....++..+++....+++++.++......+++++.+++.++++++.+.|.+.|+.++.....
T Consensus       234 i~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~  308 (402)
T cd00378         234 ILTRKG-----ELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKERGFKVVSGGTD  308 (402)
T ss_pred             EEeccH-----HHHHHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEeecCCC
Confidence            998774     677777665566667777777788877788766544567888999999999999999999988653345


Q ss_pred             CeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCC-CCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          322 NHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKS-ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       322 ~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~-~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      ++++|+++.+.+.+..++.+.|+++||.++....|+... +..+.++|+|++.++++|++++||+++++.|+++++.
T Consensus       309 ~~~v~v~~~~~~~~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~~~  385 (402)
T cd00378         309 NHLVLVDLRPKGITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALKD  385 (402)
T ss_pred             CeEEEEeCCccCCCHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence            788899987555667788888999999998765666542 3345689999999998999999999999999998864

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-36  Score=297.67  Aligned_cols=343  Identities=22%  Similarity=0.242  Sum_probs=262.8

Q ss_pred             cCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCC-CccceeeecCCcH-HHHHHHHH
Q 013217           27 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE-NKWGVNVQPLSGS-PANFEVYT  104 (447)
Q Consensus        27 ~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~-~~~~~~v~~~sGs-~a~~~~~~  104 (447)
                      +.....|..|++++..++.+.++....+.  +..........+.+|+.+++++|+++ +++    ..|+|+ .++..+..
T Consensus        29 aa~~~~p~~V~~a~~~~~~~~~an~~r~~--~~~~~~~t~~~e~aRe~va~~~~a~~~~eI----vft~~tT~aln~va~  102 (405)
T COG0520          29 AATSQKPQAVLDAVAEYYRRYNANVHRGA--HTLAEEATDLYEAAREAVARFLNADSSDEI----VFTRGTTEALNLVAR  102 (405)
T ss_pred             cccccCCHHHHHHHHHHHHhhcCCcCccc--chHHHHHHHHHHHHHHHHHHHhCCCCCCeE----EEeCChhHHHHHHHH
Confidence            44456799999999988876543333222  23334445555689999999999995 654    337776 88888888


Q ss_pred             Hh---cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCCC
Q 013217          105 AI---LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG-ASAY  180 (447)
Q Consensus       105 al---~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~-~~~~  180 (447)
                      ++   +++||+|++++.+|.+++.+|....    +..|.  +++.++++ +++.+|.|++++++++ +||+|.++ .||.
T Consensus       103 ~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~----~~~Ga--~v~~i~~~-~~g~~~~~~~~~~i~~-~Tklvais~vSn~  174 (405)
T COG0520         103 GLGRSLKPGDEIVVSDLEHHSNIVPWQELA----KRTGA--KVRVIPLD-DDGLLDLDALEKLITP-KTKLVALSHVSNV  174 (405)
T ss_pred             HhhhhhcCCCEEEEccCcchhhHHHHHHHH----HhcCc--EEEEEecC-CCCCcCHHHHHHhcCC-CceEEEEECcccc
Confidence            88   6999999999999999987764321    23354  44455566 6789999999999988 99999998 4455


Q ss_pred             CC-CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHh
Q 013217          181 PR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAI  258 (447)
Q Consensus       181 ~~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i  258 (447)
                      ++ ..|+++|+++||++|+++++|++|++|.++.++...   ++|++++|+||||.||.| |++++++      ++.+.+
T Consensus       175 tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~idv~~l---~~Df~afsgHKwl~gP~GiGvLy~r~------~~l~~l  245 (405)
T COG0520         175 TGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQEL---GCDFLAFSGHKWLLGPTGIGVLYVRK------ELLEEL  245 (405)
T ss_pred             ccccchHHHHHHHHHHcCCEEEEECccccCccCCCchhc---CCCEEEEcccccccCCCceEEEEEch------HHHhhc
Confidence            55 889999999999999999999999999887766444   499999999999999999 9999998      455544


Q ss_pred             hhccC---------------------CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEee
Q 013217          259 NNAVF---------------------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLV  316 (447)
Q Consensus       259 ~~~~~---------------------~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~  316 (447)
                      .+...                     ....|||+.....++.+|++.++..++++..++..+.+.++.+.|++ ++++++
T Consensus       246 ~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~  325 (405)
T COG0520         246 EPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSELPGVEIY  325 (405)
T ss_pred             CCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Confidence            22111                     11258999999999999999999888888889999999999999998 678888


Q ss_pred             eCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCC---CCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217          317 SGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNS---VPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       317 ~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~---~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~  393 (447)
                      .++......++.+.-.++...++...|.+.||.++.+.   .|........+.+|+|++.|||    ++|+++++++|++
T Consensus       326 g~~~~~r~~~vsF~v~~~~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt----~edid~l~~aL~~  401 (405)
T COG0520         326 GPPDADRGGIVSFNVKGIHPHDVATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASLHLYNT----EEDVDRLLEALKK  401 (405)
T ss_pred             cCCcccCceEEEEEeCCCCHHHHHHHHHhCCeEEEeccccccHHHHhcCCCCceEEEEeecCC----HHHHHHHHHHHHH
Confidence            75432334455555557788999999999999998753   2221111123459999999999    9999999999988


Q ss_pred             HHH
Q 013217          394 GVE  396 (447)
Q Consensus       394 ~l~  396 (447)
                      +..
T Consensus       402 ~~~  404 (405)
T COG0520         402 ALA  404 (405)
T ss_pred             Hhh
Confidence            753

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=100.00  E-value=2.8e-33  Score=263.59  Aligned_cols=340  Identities=20%  Similarity=0.231  Sum_probs=258.4

Q ss_pred             ecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCc-HHHHHHHHH
Q 013217           26 IASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYT  104 (447)
Q Consensus        26 ~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sG-s~a~~~~~~  104 (447)
                      .+..+++.|.|+++|..+++..|  |+|.+-|..|.+..+.+| .+|+.+++++|+++.++.+    ||| |++|..++.
T Consensus         7 ~~ATTp~~~~v~~~m~~~~~~~f--gNPsS~H~~G~~A~~~ve-~AR~~iA~llga~~~eIiF----TSG~TEsnNlaI~   79 (386)
T COG1104           7 NAATTPVDPEVLEAMLPYLTEVF--GNPSSLHSFGREARKAVE-EAREQIAKLLGADPEEIIF----TSGATESNNLAIK   79 (386)
T ss_pred             ccccCCCCHHHHHHHHHHHHhhc--CCccchhHhHHHHHHHHH-HHHHHHHHHhCCCCCeEEE----ecCCcHHHHHHHH
Confidence            35667889999999999998864  889886666777777777 6899999999999975533    666 588887777


Q ss_pred             Hh--c----CCCCEEEEecCCCCcccCCCccccccccccc-cceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcC
Q 013217          105 AI--L----KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGT-SIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA  177 (447)
Q Consensus       105 al--~----~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~  177 (447)
                      +.  .    +.|.+|+++..+|.+.+...        ++. ..++++..++++ .+|.+|+++|++++++ +|.+|.+.+
T Consensus        80 g~~~a~~~~~~~~HIIts~iEH~aVl~~~--------~~Le~~g~~Vtyl~V~-~~G~v~~e~L~~al~~-~T~LVSim~  149 (386)
T COG1104          80 GAALAYRNAQKGKHIITSAIEHPAVLNTC--------RYLERQGFEVTYLPVD-SNGLVDLEQLEEALRP-DTILVSIMH  149 (386)
T ss_pred             hhHHhhhcccCCCeEEEcccccHHHHHHH--------HHHHhcCCeEEEeCCC-CCCeEcHHHHHHhcCC-CceEEEEEe
Confidence            62  2    25789999999998876533        222 223566666677 4799999999999987 888888875


Q ss_pred             CCCC--CCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhH
Q 013217          178 SAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVEL  254 (447)
Q Consensus       178 ~~~~--~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~  254 (447)
                      .||-  ..+|+++|.++|+++|+++++|++|+.|-++.++....   +|++++|.|| |.||+| |++++++..      
T Consensus       150 aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa~Gkipi~~~~~~---vD~ls~SaHK-~~GpkGiGaLyv~~~~------  219 (386)
T COG1104         150 ANNETGTIQPIAEIGEICKERGILFHVDAVQAVGKIPIDLEELG---VDLLSFSAHK-FGGPKGIGALYVRPGV------  219 (386)
T ss_pred             cccCeeecccHHHHHHHHHHcCCeEEEehhhhcCceeccccccC---cceEEeehhh-ccCCCceEEEEECCCC------
Confidence            5543  38999999999999999999999999998876654433   8999999999 789999 999997641      


Q ss_pred             HHHhhhccCCC------CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH--CCcEeeeCCCCCeeEE
Q 013217          255 ESAINNAVFPG------LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE--LGYKLVSGGSDNHLVL  326 (447)
Q Consensus       255 ~~~i~~~~~~~------~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~~~~~~~  326 (447)
                        ++.+....|      ..||.+.+.+++++.|++.+. ..++....++.+.+++|.+.|.+  +++.+.+.....-...
T Consensus       220 --~~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a~-~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~  296 (386)
T COG1104         220 --RLEPLIHGGGQERGLRSGTENVPGIVGFGKAAEIAV-EELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNI  296 (386)
T ss_pred             --ccCceeccCcCCCCCCCCCccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCe
Confidence              122222222      268999999999999999876 45777888899999999999987  4554443321111113


Q ss_pred             ecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC--------------CCCCCCeEEEecCccccCCCCHHHHHHHHHHHH
Q 013217          327 VDLRPMGIDGARVEKILDMASITLNKNSVPGDK--------------SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH  392 (447)
Q Consensus       327 v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~--------------~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~  392 (447)
                      +.+...++.++.+...|+.+||.++.++-....              .....+.||+|+...||    ++|++++++.+.
T Consensus       297 ~~~~f~gv~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt----~eei~~~~~~l~  372 (386)
T COG1104         297 LNFSFPGVEGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTT----EEEIDAAAEALK  372 (386)
T ss_pred             EEEEeCCCcHHHHHHhccccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCC----HHHHHHHHHHHH
Confidence            334445778999999999999999875321111              11234679999999998    999999999999


Q ss_pred             HHHHHHH
Q 013217          393 EGVEITL  399 (447)
Q Consensus       393 ~~l~~~~  399 (447)
                      ++++..+
T Consensus       373 ~~i~~lr  379 (386)
T COG1104         373 EIIKRLR  379 (386)
T ss_pred             HHHHHHh
Confidence            9998653

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=100.00  E-value=5.6e-31  Score=261.98  Aligned_cols=344  Identities=21%  Similarity=0.249  Sum_probs=246.8

Q ss_pred             CeeE-ecCCCCCCHHHHHHHhhhhhccCCCCCCCC-cccCchhHHHHHHHHHHHHHHHHcCC-CCCccceeeecCCc-HH
Q 013217           22 SLEL-IASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNL-DENKWGVNVQPLSG-SP   97 (447)
Q Consensus        22 ~i~l-~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~-~~~~g~~~~~~le~~~~~~~~~~~g~-~~~~~~~~v~~~sG-s~   97 (447)
                      .+-| .++..+.|+.|++++..++...+  +++.. .+..+..+.+.++ .+++.+++++|+ ++++    |..++| ++
T Consensus        20 ~~yld~a~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~r~~la~~~g~~~~~~----i~~~~~~t~   92 (401)
T PRK10874         20 GVYLDSAATALKPQAVIEATQQFYSLSA--GNVHRSQFAAAQRLTARYE-AAREQVAQLLNAPDAKN----IVWTRGTTE   92 (401)
T ss_pred             eEEEeCCcccCCCHHHHHHHHHHHHhcc--CCCCCcccHHHHHHHHHHH-HHHHHHHHHcCCCCCCE----EEEECCHHH
Confidence            3444 46667889999999998886643  44432 2223334444454 677899999999 5553    333555 58


Q ss_pred             HHHHHHHHh----cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEE
Q 013217           98 ANFEVYTAI----LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI  173 (447)
Q Consensus        98 a~~~~~~al----~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~kli  173 (447)
                      ++..++.++    ++|||+|++.+++|++.+..+.    ......|.  +++.++++ .++.+|++++++.+++ +|++|
T Consensus        93 ~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~----~~~~~~g~--~v~~v~~~-~~~~~d~~~l~~~i~~-~t~lv  164 (401)
T PRK10874         93 SINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWL----MVAQQTGA--KVVKLPLG-ADRLPDVDLLPELITP-RTRIL  164 (401)
T ss_pred             HHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHH----HHHHHhCC--EEEEEecC-CCCcCCHHHHHHhcCc-CcEEE
Confidence            888888887    4899999999999877532221    11233454  44444455 4578999999999977 89999


Q ss_pred             EEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcc
Q 013217          174 IAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVL  250 (447)
Q Consensus       174 i~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~  250 (447)
                      ++++++|++  ..|+++|.++|+++|+++++|++|+.|..+.++...   ++|++++|+|| +.||.| |++++++    
T Consensus       165 ~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~~~~~~~~---~~d~~~~s~~K-~~gp~G~G~l~~~~----  236 (401)
T PRK10874        165 ALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHFPADVQAL---DIDFYAFSGHK-LYGPTGIGVLYGKS----  236 (401)
T ss_pred             EEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCcccccccCCchhc---CCCEEEEeccc-ccCCCccEEEEEch----
Confidence            998766664  789999999999999999999999877664433222   48999999999 568888 9999887    


Q ss_pred             hhhHHHHhhhcc------------------C--CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH
Q 013217          251 GVELESAINNAV------------------F--PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE  310 (447)
Q Consensus       251 ~~~~~~~i~~~~------------------~--~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~  310 (447)
                        ++.+.+....                  .  ....|+|+...++++..|++.+...++....+++.+.++++.+.|++
T Consensus       237 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~  314 (401)
T PRK10874        237 --ELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLATLAEDALAK  314 (401)
T ss_pred             --HHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Confidence              5555443211                  0  11257889889999999998877667777778888889999999988


Q ss_pred             C-CcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC--CC-CCCCeEEEecCccccCCCCHHHHHH
Q 013217          311 L-GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK--SA-LVPGGIRIGSPAMTTRGFSEKEFVA  386 (447)
Q Consensus       311 ~-g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~--~~-~~~~~iRig~~~~~~~g~~~~di~~  386 (447)
                      . |++++... .+.++.+.+.  +++.+++.+.|.++||.++.+..+...  .. -..++||+|++.++|    ++|+++
T Consensus       315 ~~g~~~~~~~-~~~i~~~~~~--~~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt----~edid~  387 (401)
T PRK10874        315 LPGFRSFRCQ-DSSLLAFDFA--GVHHSDLVTLLAEYGIALRAGQHCAQPLLAALGVTGTLRASFAPYNT----QSDVDA  387 (401)
T ss_pred             CCCEEEeCCC-CCcEEEEEEC--CcCHHHHHHHHHHCCcEEeccccchHHHHHHhCCCCEEEEEecccCC----HHHHHH
Confidence            4 88776532 3445555543  456788889999999999764322110  00 013689999999998    999999


Q ss_pred             HHHHHHHHHHH
Q 013217          387 IADFIHEGVEI  397 (447)
Q Consensus       387 l~~~i~~~l~~  397 (447)
                      ++++|++++..
T Consensus       388 ll~al~~~~~~  398 (401)
T PRK10874        388 LVNAVDRALEL  398 (401)
T ss_pred             HHHHHHHHHHH
Confidence            99999987764

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=100.00  E-value=1.9e-30  Score=254.31  Aligned_cols=331  Identities=17%  Similarity=0.110  Sum_probs=238.3

Q ss_pred             eeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHH
Q 013217           23 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV  102 (447)
Q Consensus        23 i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~  102 (447)
                      ++++|++..+|++|++++.+.+.+     +   ++.   . ...+.+.+++++++++|+++++.  .+.+.||++++..+
T Consensus         1 ~~~~~~~~~~~~~v~~a~~~~~~~-----~---~~~---~-~~~~~~~~~~~la~~~g~~~~~~--~~~~~~~t~al~~~   66 (356)
T cd06451           1 LLLIPGPSNVPPRVLKAMNRPMLG-----H---RSP---E-FLALMDEILEGLRYVFQTENGLT--FLLSGSGTGAMEAA   66 (356)
T ss_pred             CcccCCCcCCCHHHHHHhCCCccC-----C---CCH---H-HHHHHHHHHHHHHHHhcCCCCCE--EEEecCcHHHHHHH
Confidence            468999999999999999654321     1   111   1 12333355689999999964332  23456778999999


Q ss_pred             HHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC
Q 013217          103 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR  182 (447)
Q Consensus       103 ~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~  182 (447)
                      +.++++|||+|++..+.|.+..   +.   ..+...|.  +++.++.++ ++.+|++++++.+++++|++|+++.++|+.
T Consensus        67 ~~~~~~~g~~vl~~~~~~~~~~---~~---~~~~~~g~--~~~~v~~~~-~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~  137 (356)
T cd06451          67 LSNLLEPGDKVLVGVNGVFGDR---WA---DMAERYGA--DVDVVEKPW-GEAVSPEEIAEALEQHDIKAVTLTHNETST  137 (356)
T ss_pred             HHHhCCCCCEEEEecCCchhHH---HH---HHHHHhCC--CeEEeecCC-CCCCCHHHHHHHHhccCCCEEEEeccCCCc
Confidence            9999999999999876655421   10   12233454  444444553 468999999999976689999888665543


Q ss_pred             --CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhh
Q 013217          183 --DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAIN  259 (447)
Q Consensus       183 --~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~  259 (447)
                        ..|+++|.++|+++|+++++|++|+.|..+.+....   ++|++++|+||||++|.| |+++.++      ++.+.+.
T Consensus       138 G~~~~~~~i~~~a~~~~~~li~D~~~~~g~~~~~~~~~---~~d~~~~s~~K~l~~p~g~G~l~~~~------~~~~~~~  208 (356)
T cd06451         138 GVLNPLEGIGALAKKHDALLIVDAVSSLGGEPFRMDEW---GVDVAYTGSQKALGAPPGLGPIAFSE------RALERIK  208 (356)
T ss_pred             ccccCHHHHHHHHHhcCCEEEEeeehhccCcccccccc---CccEEEecCchhccCCCCcceeEECH------HHHHHHH
Confidence              789999999999999999999999877543322111   479999999999999988 9999987      5555544


Q ss_pred             h--ccC----------------CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCC-
Q 013217          260 N--AVF----------------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS-  320 (447)
Q Consensus       260 ~--~~~----------------~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-  320 (447)
                      .  ...                ....++++...++++.++++.+...++++..++..++++++.+.|.+.|+++..+.. 
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~  288 (356)
T cd06451         209 KKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEALGLKLLAKPEL  288 (356)
T ss_pred             hcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCccc
Confidence            2  000                023467778878888888888776677888899999999999999988988865311 


Q ss_pred             -CCeeEEecCCCCCCCHHHHHHHHhhc-CeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          321 -DNHLVLVDLRPMGIDGARVEKILDMA-SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       321 -~~~~~~v~~~~~~~~~~~~~~~L~~~-gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                       ...+.++.+. .+.+..++.+.|.+. ||.++.+..     +..+.+||++++.+++    ++|+++++++|++++
T Consensus       289 ~~~~~~~~~~~-~~~~~~~~~~~L~~~~gI~~~~g~~-----~~~~~~iRis~~~~~~----~e~v~~~~~~l~~~~  355 (356)
T cd06451         289 RSPTVTAVLVP-EGVDGDEVVRRLMKRYNIEIAGGLG-----PTAGKVFRIGHMGEAT----REDVLGVLSALEEAL  355 (356)
T ss_pred             CCCceEEEECC-CCCCHHHHHHHHHHhCCEEEecccc-----cccCCEEEEecCCCCC----HHHHHHHHHHHHHHh
Confidence             1223344443 345778899998887 999965321     1234589999998888    999999999998865

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=100.00  E-value=8.8e-31  Score=260.81  Aligned_cols=340  Identities=17%  Similarity=0.141  Sum_probs=242.0

Q ss_pred             ecCCCCCCHHHHHHHhhhhhccCCCCCCCC-cccCchhHHHHHHHHHHHHHHHHcCC-CCCccceeeecCCcH-HHHHHH
Q 013217           26 IASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNL-DENKWGVNVQPLSGS-PANFEV  102 (447)
Q Consensus        26 ~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~-~~~~g~~~~~~le~~~~~~~~~~~g~-~~~~~~~~v~~~sGs-~a~~~~  102 (447)
                      .++.++.|+.|++++..++...+  +++.. .+..+.+..+.++ .+++.+++++|+ ++++    |..++|+ +++..+
T Consensus        29 ~a~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~r~~la~~~~~~~~~~----v~~t~g~t~~l~~~  101 (406)
T PRK09295         29 SAASAQKPSQVIDAEAEFYRHGY--AAVHRGIHTLSAQATEKME-NVRKQAALFINARSAEE----LVFVRGTTEGINLV  101 (406)
T ss_pred             CcccccCCHHHHHHHHHHHHhcC--CCCCCcccHHHHHHHHHHH-HHHHHHHHHcCcCCCCe----EEEeCCHHHHHHHH
Confidence            46677889999999998886543  23321 2223444455555 577899999998 4543    3336665 888877


Q ss_pred             HHH----hcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCC
Q 013217          103 YTA----ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS  178 (447)
Q Consensus       103 ~~a----l~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~  178 (447)
                      +.+    +++|||+|++.+++|++.+..+..    .....|.  +++.++++ .++.+|++++++++++ +|++|+++++
T Consensus       102 ~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~----~~~~~g~--~v~~v~~~-~~~~~d~~~l~~~i~~-~t~lv~l~~~  173 (406)
T PRK09295        102 ANSWGNSNVRAGDNIIISEMEHHANIVPWQM----LCARVGA--ELRVIPLN-PDGTLQLETLPALFDE-RTRLLAITHV  173 (406)
T ss_pred             HHHhhhhcCCCcCEEEECcchhhHHHHHHHH----HHHHcCc--EEEEEecC-CCCCCCHHHHHHhcCC-CcEEEEEecc
Confidence            776    468999999999988765432211    1123344  44455555 4577999999999977 8999999876


Q ss_pred             CCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHH
Q 013217          179 AYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELE  255 (447)
Q Consensus       179 ~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~  255 (447)
                      +|++  ..|+++|.++|+++|+++++|++|+.|..+.++...   ++|++++|+|| +.||.| |++++++      ++.
T Consensus       174 ~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~---~~D~~~~s~~K-~~gp~G~G~l~~~~------~~~  243 (406)
T PRK09295        174 SNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHHPVDVQAL---DCDFYVFSGHK-LYGPTGIGILYVKE------ALL  243 (406)
T ss_pred             hhcccccCCHHHHHHHHHHcCCEEEEEcccccCccccCchhc---CCCEEEeehhh-ccCCCCcEEEEEch------HhH
Confidence            6654  789999999999999999999999888654433222   48999999999 668988 9999987      443


Q ss_pred             HHhhhcc---------------------CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-Cc
Q 013217          256 SAINNAV---------------------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GY  313 (447)
Q Consensus       256 ~~i~~~~---------------------~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~  313 (447)
                      +.+....                     .....||++...++++..|++.+.+.+.+...++..+.++++.+.|.+. |+
T Consensus       244 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~  323 (406)
T PRK09295        244 QEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLESVPDL  323 (406)
T ss_pred             hhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence            3332100                     0113578999999999999998877678888888888999999999874 78


Q ss_pred             EeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC---CCCCCCeEEEecCccccCCCCHHHHHHHHHH
Q 013217          314 KLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK---SALVPGGIRIGSPAMTTRGFSEKEFVAIADF  390 (447)
Q Consensus       314 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~---~~~~~~~iRig~~~~~~~g~~~~di~~l~~~  390 (447)
                      +++.+.....++.+.+  .+.+++++.+.|+++||.++.+......   ....++.+|+|++.+||    ++|+++++++
T Consensus       324 ~~~~~~~~~~iv~~~~--~~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~ynt----~~did~l~~~  397 (406)
T PRK09295        324 TLYGPQNRLGVIAFNL--GKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNT----HEEVDRLVAG  397 (406)
T ss_pred             EEeCCCCCceEEEEEE--CCcCHHHHHHHHHhCCeEEeccccchHHHHHHHCCCCEEEEEccCCCC----HHHHHHHHHH
Confidence            8776422233333333  3456788888999999999764311110   00123579999999999    9999999999


Q ss_pred             HHHHHH
Q 013217          391 IHEGVE  396 (447)
Q Consensus       391 i~~~l~  396 (447)
                      |+++..
T Consensus       398 l~~i~~  403 (406)
T PRK09295        398 LQRIHR  403 (406)
T ss_pred             HHHHHH
Confidence            988643

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=100.00  E-value=1.8e-30  Score=258.16  Aligned_cols=343  Identities=20%  Similarity=0.217  Sum_probs=243.9

Q ss_pred             eeE-ecCCCCCCHHHHHHHhhhhhccCCCCCCCC-cccCchhHHHHHHHHHHHHHHHHcCCC-CCccceeeecCCc-HHH
Q 013217           23 LEL-IASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSG-SPA   98 (447)
Q Consensus        23 i~l-~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~-~~~~g~~~~~~le~~~~~~~~~~~g~~-~~~~~~~v~~~sG-s~a   98 (447)
                      +-| .++..++|+.|++++..++...+  ++++. .+..+....+.++ .+++.+++++|++ +++    |..++| +++
T Consensus        18 iyld~a~~~~~p~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~r~~la~~~g~~~~~~----i~~t~g~t~~   90 (398)
T TIGR03392        18 VYLDSAATALKPQAVIDATQQFYRLSS--GTVHRSQHQQAQSLTARYE-LARQQVARFLNAPDAEN----IVWTRGTTES   90 (398)
T ss_pred             EEeeCccccCCCHHHHHHHHHHHHhcC--CCCCCcccHHHHHHHHHHH-HHHHHHHHHhCCCCCCe----EEEeCChHHH
Confidence            444 46666889999999988876432  44432 2223333334444 6788999999995 543    333555 489


Q ss_pred             HHHHHHHh----cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEE
Q 013217           99 NFEVYTAI----LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII  174 (447)
Q Consensus        99 ~~~~~~al----~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii  174 (447)
                      +..++.++    ++|||+|++.+++|++.+..+.    ..+...|.  +++.++++ .++.+|++++++++++ +|++|+
T Consensus        91 l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~----~~~~~~g~--~v~~v~~~-~~~~~~~~~l~~~i~~-~t~lv~  162 (398)
T TIGR03392        91 INLVAQSYARPRLQPGDEIIVSEAEHHANLIPWL----MVAQQTGA--KVVKLPIG-ADLLPDIRQLPELLTP-RTRILA  162 (398)
T ss_pred             HHHHHHHhhhccCCCCCEEEECCcchhHHHHHHH----HHHHHcCc--EEEEEecC-CCCCcCHHHHHHHhcc-CceEEE
Confidence            88888887    5899999999999877432111    11233454  55555565 3467999999999987 899999


Q ss_pred             EcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcch
Q 013217          175 AGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLG  251 (447)
Q Consensus       175 ~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~  251 (447)
                      ++.++|++  ..|+++|.++|+++|+++++|++|+.|....+....   ++|++++|+|| +.||.| |++++++     
T Consensus       163 i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~---~~d~~~~s~~K-~~gp~G~G~l~~~~-----  233 (398)
T TIGR03392       163 LGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGPPDVQAL---DIDFYAFSGHK-LYGPTGIGVLYGKT-----  233 (398)
T ss_pred             EECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCCCCChhhc---CCCEEEEeccc-ccCCCceEEEEEcH-----
Confidence            88766664  789999999999999999999999877654332221   48999999999 557888 9999887     


Q ss_pred             hhHHHHhhhccC--------------------CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-
Q 013217          252 VELESAINNAVF--------------------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-  310 (447)
Q Consensus       252 ~~~~~~i~~~~~--------------------~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-  310 (447)
                       ++.+.+.....                    ....|||+...++++..|++.+.+.++++..++..+.++++.+.|.+ 
T Consensus       234 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l  312 (398)
T TIGR03392       234 -ELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQL  312 (398)
T ss_pred             -HHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC
Confidence             55554432110                    11257899999999999999877667777778888889999999987 


Q ss_pred             CCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC--CC-CCCCeEEEecCccccCCCCHHHHHHH
Q 013217          311 LGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK--SA-LVPGGIRIGSPAMTTRGFSEKEFVAI  387 (447)
Q Consensus       311 ~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~--~~-~~~~~iRig~~~~~~~g~~~~di~~l  387 (447)
                      .|+++.... .+.++.+.+.  +++++++.+.|.++||.++.+......  .. ..+++||+|++.++|    ++|++++
T Consensus       313 ~g~~~~~~~-~~~i~~~~~~--~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t----~~ei~~l  385 (398)
T TIGR03392       313 PGFRSFRCP-GSSLLAFDFA--GVHHSDLAALLAESGIALRAGQHCAQPLMAALGVSGTLRASFAPYNT----QQDVDAL  385 (398)
T ss_pred             CCeEEeCCC-CCcEEEEEeC--CcCHHHHHHHHHhCCEEEecCccchHHHHHHhCCCCEEEEEeeccCC----HHHHHHH
Confidence            488776432 3444444443  456788999999999999764321100  00 013589999999998    9999999


Q ss_pred             HHHHHHHHHH
Q 013217          388 ADFIHEGVEI  397 (447)
Q Consensus       388 ~~~i~~~l~~  397 (447)
                      +++|+++++.
T Consensus       386 ~~~l~~~~~~  395 (398)
T TIGR03392       386 VDAVGAALEL  395 (398)
T ss_pred             HHHHHHHHHH
Confidence            9999987763

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.98  E-value=1.1e-29  Score=251.75  Aligned_cols=335  Identities=16%  Similarity=0.141  Sum_probs=245.5

Q ss_pred             CeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHH
Q 013217           22 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE  101 (447)
Q Consensus        22 ~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~  101 (447)
                      .+.+.|++..++++|++++...+.++           .+..+. ++-+.+++++++++|++.++.  .+.+++|++++.+
T Consensus        10 ~~l~~pGP~~~~~~V~~a~~~~~~~~-----------~~~~~~-~~~~~~~~~l~~~~g~~~~~~--vi~~~~gt~a~~~   75 (401)
T PLN02409         10 NHLFVPGPVNIPERVLRAMNRPNEDH-----------RSPAFP-ALTKELLEDVKYIFKTKSGTP--FIFPTTGTGAWES   75 (401)
T ss_pred             ceeccCCCCCCCHHHHHHhcCCCCCC-----------CCHHHH-HHHHHHHHHHHHHhCCCCCCE--EEEeCCcHHHHHH
Confidence            45678999999999999997644321           122333 344467789999999986443  3556778899999


Q ss_pred             HHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhh---hCCcEEEEcCC
Q 013217          102 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---FRPKLIIAGAS  178 (447)
Q Consensus       102 ~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~---~~~klii~~~~  178 (447)
                      ++.++++|||+|++.++.|.+..   +.   ..+...|.  +++.++.+. ++.+|++++++++++   .++++|+++++
T Consensus        76 a~~~~~~~Gd~Vlv~~~~~~~~~---~~---~~~~~~g~--~v~~v~~~~-~~~~~~~~l~~~l~~~~~~~~k~v~~~~~  146 (401)
T PLN02409         76 ALTNTLSPGDKVVSFRIGQFSLL---WI---DQMQRLNF--DVDVVESPW-GQGADLDILKSKLRQDTNHKIKAVCVVHN  146 (401)
T ss_pred             HHHhcCCCCCEEEEeCCCchhHH---HH---HHHHHcCC--ceEEEECCC-CCCCCHHHHHHHHhhCcCCCccEEEEEee
Confidence            99999999999999987665431   10   12233454  444444543 345899999999986   37899998865


Q ss_pred             CCCC--CCChHHHHHH--HHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhh
Q 013217          179 AYPR--DFDYPRMRQI--ADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVE  253 (447)
Q Consensus       179 ~~~~--~~~~~~i~~i--a~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~  253 (447)
                      .+++  ..|+++|.++  |+++|+++++|++|+.|..+.+....   ++|++++|+||||+||.| |++++++      +
T Consensus       147 ~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~id~~~~---~~D~~~~s~~K~l~~P~G~G~l~~~~------~  217 (401)
T PLN02409        147 ETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGALDFRMDEW---GVDVALTGSQKALSLPTGLGIVCASP------K  217 (401)
T ss_pred             cccccccCCHHHHHHHHhhhccCcEEEEEcccccCCcccccccc---CccEEEEcCccccCcCCCcceeEECH------H
Confidence            5443  7899999999  99999999999999887664443322   489999999999999888 9999987      5


Q ss_pred             HHHHhhhccC---------------CC-C-CCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEee
Q 013217          254 LESAINNAVF---------------PG-L-QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLV  316 (447)
Q Consensus       254 ~~~~i~~~~~---------------~~-~-~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~  316 (447)
                      ..+++.....               .+ . .+||+...+.++..|++.+.+.++++..++..+.++++.+.|.+.|++++
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~g~~~~  297 (401)
T PLN02409        218 ALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAWGLKLC  297 (401)
T ss_pred             HHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeec
Confidence            5555432110               01 1 35788888999999999988778888899999999999999998999887


Q ss_pred             eCCCC--C-eeEEecCCCCCCCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHH
Q 013217          317 SGGSD--N-HLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH  392 (447)
Q Consensus       317 ~~~~~--~-~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~  392 (447)
                      .+...  + .+.++.+ +.+++..++.+.| +++||.+..+.     .+.....||||++.+++    ++|+.++..+|.
T Consensus       298 ~~~~~~~s~~v~~~~~-p~~~~~~~l~~~l~~~~~i~i~~G~-----~~~~~~~~Rig~~g~~~----~~~~~~~~~~~~  367 (401)
T PLN02409        298 TKKPEWRSDTVTAVVV-PEGIDSAEIVKNAWKKYNLSLGLGL-----NKVAGKVFRIGHLGNVN----ELQLLGALAGVE  367 (401)
T ss_pred             cCChhhcccceEEEeC-CCCCCHHHHHHHHHHhCCEEEEcCC-----CcccCCEEEEcCCCCCC----HHHHHHHHHHHH
Confidence            64211  2 2223433 3467777787655 67899986542     12235689999999888    999999999999


Q ss_pred             HHHHHH
Q 013217          393 EGVEIT  398 (447)
Q Consensus       393 ~~l~~~  398 (447)
                      +++...
T Consensus       368 ~~l~~~  373 (401)
T PLN02409        368 MVLKDV  373 (401)
T ss_pred             HHHHHc
Confidence            998754

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.98  E-value=4.8e-30  Score=256.90  Aligned_cols=341  Identities=17%  Similarity=0.144  Sum_probs=240.8

Q ss_pred             cCCCCCCHHHHHHHhhhhhccCCCCCCCC-cccCchhHHHHHHHHHHHHHHHHcCCC-CCccceeeecCCc-HHHHHHHH
Q 013217           27 ASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSG-SPANFEVY  103 (447)
Q Consensus        27 ~~~n~~~~~v~~a~~~~~~~~~~~g~~~~-~~~~g~~~~~~le~~~~~~~~~~~g~~-~~~~~~~v~~~sG-s~a~~~~~  103 (447)
                      ++..+.|+.|++++..++...+  +++.. .++.+.+..+.++ .+++.+++++|++ +++    |..++| ++++..++
T Consensus        39 a~~~~~p~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~r~~la~~~~~~~~~~----v~~t~g~t~al~~i~  111 (424)
T PLN02855         39 AATSQKPAAVLDALQDYYEEYN--SNVHRGIHALSAKATDAYE-LARKKVAAFINASTSRE----IVFTRNATEAINLVA  111 (424)
T ss_pred             ccccCCCHHHHHHHHHHHHhcC--CCCCCccchHHHHHHHHHH-HHHHHHHHHcCCCCCCE----EEEeCCHHHHHHHHH
Confidence            5566789999999988776533  23322 2233334444444 5678999999996 343    333555 58888777


Q ss_pred             HH----hcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCC
Q 013217          104 TA----ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA  179 (447)
Q Consensus       104 ~a----l~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~  179 (447)
                      .+    .++|||+|++.+++|++.+..+.    ......|.  +++.+++++ ++.+|++++++.+++ +|++|+++.++
T Consensus       112 ~~~~~~~~~~gd~vl~~~~~~~s~~~~~~----~~a~~~g~--~v~~v~~~~-~~~~~~~~l~~~i~~-~t~lv~i~~~~  183 (424)
T PLN02855        112 YTWGLANLKPGDEVILSVAEHHSNIVPWQ----LVAQKTGA--VLKFVGLTP-DEVLDVEQLKELLSE-KTKLVATHHVS  183 (424)
T ss_pred             HHhhhhcCCCcCEEEECCCccHHHHHHHH----HHHHHcCC--EEEEEecCC-CCCcCHHHHHHHhcc-CceEEEEeCcc
Confidence            65    36899999999999877542221    01123344  444555553 356999999999987 89999998766


Q ss_pred             CCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHH
Q 013217          180 YPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES  256 (447)
Q Consensus       180 ~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~  256 (447)
                      |++  ..|+++|.++|+++|+++++|++|+.|....++...   ++|++++|+|| +.||.| |++++++      ++.+
T Consensus       184 n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~~~~~~~~---~~d~~~~s~~K-~~gp~G~G~l~~~~------~~~~  253 (424)
T PLN02855        184 NVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMPVDVQTL---GADFLVASSHK-MCGPTGIGFLWGKS------DLLE  253 (424)
T ss_pred             ccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCcCCCchhc---CCCEEEeeccc-ccCCCccEEEEEch------hhhh
Confidence            654  789999999999999999999999887654432222   47999999999 678988 9999987      4444


Q ss_pred             Hhhhcc--------------------CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEe
Q 013217          257 AINNAV--------------------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKL  315 (447)
Q Consensus       257 ~i~~~~--------------------~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  315 (447)
                      ++....                    .....||++...++++..+++.+.+.++++..+++.+.++.+.+.|++. |+++
T Consensus       254 ~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i  333 (424)
T PLN02855        254 SMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSSVPGVRI  333 (424)
T ss_pred             cCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            433210                    0112578999999999999998877788888888999999999999874 8888


Q ss_pred             eeCCC-----CCeeEEecCCCCCCCHHHHHHHHhhc-CeEEccCCCCC---CCCCCCCCeEEEecCccccCCCCHHHHHH
Q 013217          316 VSGGS-----DNHLVLVDLRPMGIDGARVEKILDMA-SITLNKNSVPG---DKSALVPGGIRIGSPAMTTRGFSEKEFVA  386 (447)
Q Consensus       316 ~~~~~-----~~~~~~v~~~~~~~~~~~~~~~L~~~-gI~v~~~~~p~---~~~~~~~~~iRig~~~~~~~g~~~~di~~  386 (447)
                      +.+..     ...++.+.+  .+.+..++.+.|.+. ||.++.++...   .........+|+|++.+||    ++|+++
T Consensus       334 ~~~~~~~~~~r~~~v~~~~--~~~~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt----~~di~~  407 (424)
T PLN02855        334 YGPKPSEGVGRAALCAFNV--EGIHPTDLSTFLDQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFYNT----KEEVDA  407 (424)
T ss_pred             eCCCcccccCcccEEEEEE--CCcCHHHHHHHhcccCCEEEechhhhhHHHHHHhCCCCeEEEEeccCCC----HHHHHH
Confidence            86421     122333333  345678899999776 99997642110   0000013579999999999    999999


Q ss_pred             HHHHHHHHHHHH
Q 013217          387 IADFIHEGVEIT  398 (447)
Q Consensus       387 l~~~i~~~l~~~  398 (447)
                      +++.|++++...
T Consensus       408 l~~~l~~~~~~~  419 (424)
T PLN02855        408 FIHALKDTIAFF  419 (424)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988754

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.97  E-value=1.8e-29  Score=251.39  Aligned_cols=341  Identities=19%  Similarity=0.187  Sum_probs=239.9

Q ss_pred             ecCCCCCCHHHHHHHhhhhhccCCCCCCCCc-ccCchhHHHHHHHHHHHHHHHHcCCC-CCccceeeecCCcH-HHHHHH
Q 013217           26 IASENFTSRAVMEAVGSCLTNKYSEGLPGKR-YYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGS-PANFEV  102 (447)
Q Consensus        26 ~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~-~~~g~~~~~~le~~~~~~~~~~~g~~-~~~~~~~v~~~sGs-~a~~~~  102 (447)
                      .++..++|+.|.+++...+...+  ++|... ++.+......++ .+++.+++++|++ +++    |..++|+ +++..+
T Consensus        24 ~~~~~~~p~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~r~~ia~~~~~~~~~~----v~~~~g~t~~l~~~   96 (403)
T TIGR01979        24 SAATSQKPQQVIDAVAEYYRNSN--ANVHRGIHTLSVRATEAYE-AVREKVAKFINAASDEE----IVFTRGTTESINLV   96 (403)
T ss_pred             CccccCCCHHHHHHHHHHHHhCC--CCCCCCccHHHHHHHHHHH-HHHHHHHHHhCcCCCCe----EEEeCCHHHHHHHH
Confidence            46666889999999988776643  333321 222223333444 5678899999998 443    3335555 787777


Q ss_pred             HHHh----cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCC
Q 013217          103 YTAI----LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS  178 (447)
Q Consensus       103 ~~al----~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~  178 (447)
                      +.++    +++||+|++.+++|++.+..+.    ......|.  +++.++++ +++.+|++++++.+.+ +|++|+++.+
T Consensus        97 ~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~----~~~~~~g~--~~~~v~~~-~~~~~~~~~l~~~i~~-~~~lv~~~~~  168 (403)
T TIGR01979        97 AYSWGDSNLKAGDEIVISEMEHHANIVPWQ----LLAERTGA--TLKFIPLD-DDGTLDLDDLEKLLTE-KTKLVAITHV  168 (403)
T ss_pred             HHHhhhhcCCCCCEEEECcchhhHHHHHHH----HHHHhcCc--EEEEEecC-CCCCCCHHHHHHHhcc-CCeEEEEEcc
Confidence            7764    6899999999998887543221    11223454  44444455 5678999999999987 8999998866


Q ss_pred             CCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHH
Q 013217          179 AYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELE  255 (447)
Q Consensus       179 ~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~  255 (447)
                      ++++  ..|+++|.++|+++|+++++|++|+.|....++...   ++|++++|+||++ ||.| |++++++      ++.
T Consensus       169 ~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~~~~~~~---~~d~~~~s~~K~~-gp~G~g~l~~~~------~~~  238 (403)
T TIGR01979       169 SNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDVQAL---DCDFYVFSGHKMY-GPTGIGVLYGKE------ELL  238 (403)
T ss_pred             cccccccCCHHHHHHHHHHcCCEEEEEchhhcCccccCcccc---CCCEEEEeccccc-CCCCceEEEEch------HHH
Confidence            6553  789999999999999999999999888654433222   4899999999965 7888 9999887      444


Q ss_pred             HHhhhccC--------------------CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcE
Q 013217          256 SAINNAVF--------------------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYK  314 (447)
Q Consensus       256 ~~i~~~~~--------------------~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  314 (447)
                      +.+.....                    ....|+++...++++..+++.+...+++...+++.+.++.+.+.|++. |++
T Consensus       239 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~  318 (403)
T TIGR01979       239 EQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGEIPGLR  318 (403)
T ss_pred             hcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence            44431100                    012478888888899999988776677888899999999999999874 888


Q ss_pred             eeeCCC---CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC---CCCCCCeEEEecCccccCCCCHHHHHHHH
Q 013217          315 LVSGGS---DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK---SALVPGGIRIGSPAMTTRGFSEKEFVAIA  388 (447)
Q Consensus       315 ~~~~~~---~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~---~~~~~~~iRig~~~~~~~g~~~~di~~l~  388 (447)
                      ++.+..   ..+++.+.+.  +.+..++.+.|.++||.++.+......   ..-.++.+|++++.+++    ++|+++++
T Consensus       319 ~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~iRiS~~~~~t----~~di~~l~  392 (403)
T TIGR01979       319 IYGPRDAEDRGGIISFNVE--GVHPHDVGTILDEEGIAVRSGHHCAQPLMRRFGVPATCRASFYIYNT----EEDIDALV  392 (403)
T ss_pred             EeCCCCccccCceEEEEeC--CcCHHHHHHHHhhCCEEEcchhhhhHHHHHHhCCCCEEEEEeccCCC----HHHHHHHH
Confidence            876421   1344444443  346778889999999999753211000   00014589999999988    99999999


Q ss_pred             HHHHHHHHH
Q 013217          389 DFIHEGVEI  397 (447)
Q Consensus       389 ~~i~~~l~~  397 (447)
                      ++|+++++.
T Consensus       393 ~~l~~~~~~  401 (403)
T TIGR01979       393 EALKKVRKF  401 (403)
T ss_pred             HHHHHHHHH
Confidence            999887653

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.97  E-value=6e-30  Score=251.95  Aligned_cols=333  Identities=21%  Similarity=0.225  Sum_probs=235.8

Q ss_pred             ecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCC-CccceeeecCCcHHHHHHHHH
Q 013217           26 IASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE-NKWGVNVQPLSGSPANFEVYT  104 (447)
Q Consensus        26 ~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~-~~~~~~v~~~sGs~a~~~~~~  104 (447)
                      .++..++|+.|++++..++.+.+..+..+. +..+.++.+.++ .+++.+++++|+++ .++   +.+.++|.++..++.
T Consensus         5 ~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~r~~la~~lg~~~~~~v---~~~~~~t~a~~~~~~   79 (371)
T PF00266_consen    5 NAGTGPMPKSVLEAISDYLRNFYANPHSGV-SHRSREFAEILE-EAREALAKLLGAPPDEEV---VFTSNGTEALNAVAS   79 (371)
T ss_dssp             TSSS-B-BHHHHHHHHHHHHHSGSSTSTSS-STTSHHHHHHHH-HHHHHHHHHHTSSTTEEE---EEESSHHHHHHHHHH
T ss_pred             CCCccCCCHHHHHHHHHHHHHhhhcCcccc-cchhhhhhHHHH-HHHHHHHHhcCCcccccc---ccccccchhhhhhhh
Confidence            467788999999999998877654332232 223444455554 67899999999998 532   334566689999999


Q ss_pred             Hh---cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCC-C
Q 013217          105 AI---LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-Y  180 (447)
Q Consensus       105 al---~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~-~  180 (447)
                      ++   +++||+|++.+.+|++....+.    ...+..|..+.  .++.+ .++.+|++++++.+++ +|++|+++... .
T Consensus        80 ~l~~~~~~g~~vl~~~~~~~s~~~~~~----~~~~~~g~~v~--~i~~~-~~~~~~~~~~~~~l~~-~~~lv~~~~~~~~  151 (371)
T PF00266_consen   80 SLLNPLKPGDEVLVTSNEHPSNRYPWE----EIAKRKGAEVR--VIPAD-PGGSLDLEDLEEALNP-DTRLVSISHVENS  151 (371)
T ss_dssp             HHHHHGTTTCEEEEEESSHHHHHHHHH----HHHHHTTEEEE--EEEEG-TTSSCSHHHHHHHHHT-TESEEEEESBETT
T ss_pred             ccccccccccccccccccccccccccc----cccccchhhhc--ccccc-ccchhhhhhhhhhhcc-ccceEEeeccccc
Confidence            98   7999999999988877642221    01123354344  44454 4578999999999986 99999998433 3


Q ss_pred             C-CCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHh
Q 013217          181 P-RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAI  258 (447)
Q Consensus       181 ~-~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i  258 (447)
                      + ...|+++|.++|+++|+++++|++|+.|.+..++...   ++|++++|+|| |+||+| |++++++      +..+++
T Consensus       152 tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~~id~~~~---~~D~~~~s~~K-l~gp~G~g~l~v~~------~~~~~~  221 (371)
T PF00266_consen  152 TGVRNPIEEIAKLAHEYGALLVVDAAQSAGCVPIDLDEL---GADFLVFSSHK-LGGPPGLGFLYVRP------EAIERL  221 (371)
T ss_dssp             TTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTSS--TTTT---TESEEEEESTS-TTSSSTEEEEEEEH------HHHHHH
T ss_pred             ccEEeeeceehhhhhccCCceeEechhcccccccccccc---ccceeeecccc-cCCCCchhhheehh------hhhhcc
Confidence            3 3889999999999999999999999999876654433   48999999999 999999 9999998      455555


Q ss_pred             hhccCC--------------------CCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeee
Q 013217          259 NNAVFP--------------------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVS  317 (447)
Q Consensus       259 ~~~~~~--------------------~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~  317 (447)
                      .+....                    ...||+++..+.++..+++.+...+.++..++..+.++++.+.|.+. ++.++.
T Consensus       222 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~  301 (371)
T PF00266_consen  222 RPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEELPGIEVLG  301 (371)
T ss_dssp             HTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESS
T ss_pred             ccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCceeEee
Confidence            322111                    12578999999999999999876778888899999999999999985 455544


Q ss_pred             C---CCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCC---CCCCCCCCeEEEecCccccCCCCHHHHHHH
Q 013217          318 G---GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPG---DKSALVPGGIRIGSPAMTTRGFSEKEFVAI  387 (447)
Q Consensus       318 ~---~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~---~~~~~~~~~iRig~~~~~~~g~~~~di~~l  387 (447)
                      +   .....++.+.+  .+.++.++.+.|++.||.+..+..-.   .......++||+|++.++|    ++|++++
T Consensus       302 ~~~~~~~~~i~~~~~--~~~~~~~~~~~L~~~~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt----~~dv~~l  371 (371)
T PF00266_consen  302 PDDEPRRPSIVSFNL--PGSDADDVVKYLEERGIAVSTGSACAGPSLDILGMGGVIRVSLHYYNT----EEDVDRL  371 (371)
T ss_dssp             SSCGGBGTTEEEEEE--TTSSHHHHHHHHHHHTEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSS----HHHHHHH
T ss_pred             ecccccccceEEEee--cCCCHHHHHHHHhhcCEEEeccCcccHHHHHHhCCCCEEEEeccCCCC----HHHHhhC
Confidence            2   11223334444  46688999999999999997632110   0000012689999999999    9999975

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=99.97  E-value=1.4e-29  Score=233.78  Aligned_cols=339  Identities=19%  Similarity=0.250  Sum_probs=245.8

Q ss_pred             cCeeEecCC-C-CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC-CCccceeeecCCcH-
Q 013217           21 KSLELIASE-N-FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGS-   96 (447)
Q Consensus        21 ~~i~l~~~~-n-~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~-~~~~~~~v~~~sGs-   96 (447)
                      +-|.|..++ . .+||+|++|+...+.+. ..|||..    .    +++-+..+.|.++.++.+ ..+|   |..+.|. 
T Consensus        26 DvlPmWVADMDf~~pp~i~~Al~~rvdhG-vfGY~~~----~----~~~~~ai~~w~~~r~~~~i~~e~---i~~~p~VV   93 (388)
T COG1168          26 DVLPMWVADMDFPTPPEIIEALRERVDHG-VFGYPYG----S----DELYAAIAHWFKQRHQWEIKPEW---IVFVPGVV   93 (388)
T ss_pred             CcceeeeecccCCCCHHHHHHHHHHHhcC-CCCCCCC----C----HHHHHHHHHHHHHhcCCCCCcce---EEEcCcch
Confidence            346665444 3 46999999999988875 3588743    2    234445568999999987 3455   2235555 


Q ss_pred             HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 013217           97 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG  176 (447)
Q Consensus        97 ~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~  176 (447)
                      .++..+++++.+|||.|++.+|.|...+        +.++..|+.+...|+..+.+.+.+|+++||+.+.+.++|+.+++
T Consensus        94 pgi~~~I~~~T~~gd~Vvi~tPvY~PF~--------~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLC  165 (388)
T COG1168          94 PGISLAIRALTKPGDGVVIQTPVYPPFY--------NAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILC  165 (388)
T ss_pred             HhHHHHHHHhCcCCCeeEecCCCchHHH--------HHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEe
Confidence            8999999999999999999998876543        35566777444444433434567899999999988788999999


Q ss_pred             CCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-----ccc--EEEeCCCccc--CCCCCceE
Q 013217          177 ASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-----YCD--VVTTTTHKSL--RGPRGGMI  242 (447)
Q Consensus       177 ~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-----~~D--i~~~s~~K~l--~Gp~gG~i  242 (447)
                      +|+||+  ++   ++.+|.+||.+||+.||+|+.| +.++..+..+.|+.     .+|  +.+.|.+|+|  +|.+.+.+
T Consensus       166 nPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIH-aDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~  244 (388)
T COG1168         166 NPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIH-ADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYI  244 (388)
T ss_pred             CCCCCCCccccHHHHHHHHHHHHHcCCEEEeeccc-ccccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeE
Confidence            889886  44   5788899999999999999998 67776663333332     233  7778899997  68888777


Q ss_pred             EeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH--CCcEeeeCCC
Q 013217          243 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE--LGYKLVSGGS  320 (447)
Q Consensus       243 ~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~  320 (447)
                      +..++     ++..+..+......+++|+...+.|..+|+++-. ++.++..+.+..|.+++++.|.+  +++++..+ .
T Consensus       245 Ii~n~-----~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~~G~-~WLd~L~~yl~~N~~~~~~~l~~~~P~v~v~~p-~  317 (388)
T COG1168         245 IISNR-----ELRAKFLKRLKRNGLHGPSALGIIATEAAYNQGE-PWLDELLEYLKDNRDYVADFLNKHLPGVKVTEP-Q  317 (388)
T ss_pred             EecCH-----HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHHHHhhCCCcEEecC-C
Confidence            77664     6655544444444567889988888888988753 56789999999999999999988  58888764 5


Q ss_pred             CCeeEEecCCCCCCCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHH
Q 013217          321 DNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH  392 (447)
Q Consensus       321 ~~~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~  392 (447)
                      .+++.|+|++..+++..++.++| ++.+|.++.+...|.   ...+.+|+..  .++|...++.+++++.+++
T Consensus       318 gTYL~WLD~r~l~l~d~~l~~~ll~~akVal~~G~~FG~---~g~gf~RlN~--acpr~~L~eal~ri~~al~  385 (388)
T COG1168         318 GTYLAWLDCRELGLDDSELAEFLLEEAKVALSPGSTFGE---EGSGFVRLNF--ACPRAILEEALERLKRALK  385 (388)
T ss_pred             CceeeeeeccccCCChHHHHHHHHHhhcEeccCCCccCc---CCCceEEEec--CCCHHHHHHHHHHHHHHHh
Confidence            68999999999999887887765 678999987644433   2345688753  2333344666666665544

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.97  E-value=1.6e-29  Score=249.73  Aligned_cols=338  Identities=18%  Similarity=0.215  Sum_probs=239.7

Q ss_pred             ecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHH
Q 013217           26 IASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA  105 (447)
Q Consensus        26 ~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~a  105 (447)
                      .++..++|+.|++++..++...  .++|+..+..+..+.+.++ .+++++++++|++++++   +.+.+|++++..++.+
T Consensus         5 ~aa~~~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~r~~la~~~g~~~~~i---~~t~~~t~a~~~al~~   78 (379)
T TIGR03402         5 NNATTRVDPEVLEAMLPYFTEY--FGNPSSMHSFGGEVGKAVE-EAREQVAKLLGAEPDEI---IFTSGGTESDNTAIKS   78 (379)
T ss_pred             CcCCCCCCHHHHHHHHHHHHhc--CCCCCcccHHHHHHHHHHH-HHHHHHHHHhCCCCCeE---EEeCcHHHHHHHHHHH
Confidence            4677789999999999888653  4666643323334444444 67889999999987543   2234566888888877


Q ss_pred             hc---CCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC
Q 013217          106 IL---KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR  182 (447)
Q Consensus       106 l~---~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~  182 (447)
                      ++   .+||+|++...+|++....+.     .+...|.  +++.++++ +++.+|++++++++++ ++++|+++.+++++
T Consensus        79 ~~~~~~~~~~vv~~~~~~~s~~~~~~-----~~~~~G~--~v~~v~~~-~~g~~~~~~l~~~i~~-~~~lv~i~~~~n~t  149 (379)
T TIGR03402        79 ALAAQPEKRHIITTAVEHPAVLSLCQ-----HLEKQGY--KVTYLPVD-EEGRLDLEELRAAITD-DTALVSVMWANNET  149 (379)
T ss_pred             HHHhcCCCCeEEEcccccHHHHHHHH-----HHHHcCC--EEEEEccC-CCCcCCHHHHHHhcCC-CcEEEEEEcccCCe
Confidence            63   567899998888876543221     1112343  44455555 4578999999999987 89999888655554


Q ss_pred             --CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhh
Q 013217          183 --DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAIN  259 (447)
Q Consensus       183 --~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~  259 (447)
                        ..|+++|.++|+++|+++++|++|+.|..+.++...   ++|++++|+|| +.||.| |+++++++      .  .+.
T Consensus       150 G~~~~~~~I~~l~~~~g~~vivD~~~~~g~~~~~~~~~---~~D~~~~s~~K-~~gp~G~g~l~v~~~------~--~~~  217 (379)
T TIGR03402       150 GTIFPIEEIGEIAKERGALFHTDAVQAVGKIPIDLKEM---NIDMLSLSGHK-LHGPKGVGALYIRKG------T--RFR  217 (379)
T ss_pred             eecccHHHHHHHHHHcCCEEEEECcccccccccCcccC---CCCEEEEcHHH-cCCCCceEEEEECCC------C--CCC
Confidence              889999999999999999999999888665443332   48999999999 779999 99999874      1  111


Q ss_pred             hcc------CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH--CCcEeeeCCCC--CeeEEecC
Q 013217          260 NAV------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE--LGYKLVSGGSD--NHLVLVDL  329 (447)
Q Consensus       260 ~~~------~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~~--~~~~~v~~  329 (447)
                      +..      .....|+++...+.++..+++.+.. ++++..++..++++.+.+.|.+  .++.+..+...  ...+.+.+
T Consensus       218 p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~-~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  296 (379)
T TIGR03402       218 PLLRGGHQERGRRAGTENVPGIVGLGKAAELATE-HLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISF  296 (379)
T ss_pred             CcccCCccCCCcCCCCccHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEe
Confidence            111      0123578999999999999988753 5677778888888899998874  47776653221  12232233


Q ss_pred             CCCCCCHHHHHHHHhhcCeEEccCC--CCCCCC------------CCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          330 RPMGIDGARVEKILDMASITLNKNS--VPGDKS------------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       330 ~~~~~~~~~~~~~L~~~gI~v~~~~--~p~~~~------------~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                        .+.++.++...|.++||.++.++  .++...            ....+.+|+|++.+||    ++|++++++.|++++
T Consensus       297 --~~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t----~~di~~~~~~l~~~~  370 (379)
T TIGR03402       297 --EYIEGEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNT----EEDIDYVLEVLPPII  370 (379)
T ss_pred             --cCCCHHHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCC----HHHHHHHHHHHHHHH
Confidence              24567889999999999998642  111100            1124689999999999    999999999999887


Q ss_pred             HH
Q 013217          396 EI  397 (447)
Q Consensus       396 ~~  397 (447)
                      ..
T Consensus       371 ~~  372 (379)
T TIGR03402       371 AR  372 (379)
T ss_pred             HH
Confidence            64

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.97  E-value=4.5e-29  Score=244.62  Aligned_cols=337  Identities=18%  Similarity=0.211  Sum_probs=242.0

Q ss_pred             cCeeEecCCC--CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCcH
Q 013217           21 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGS   96 (447)
Q Consensus        21 ~~i~l~~~~n--~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sGs   96 (447)
                      +.|+|..+++  .+|+.+++++...+.+... .|     + ..+...++.+.+.+++.+.+|.+  +++   +|.+|+|+
T Consensus        29 ~vi~l~iG~Pd~~~p~~i~~a~~~a~~~~~~-~Y-----~-~~~G~~~LReaia~~~~~~~~~~~~~~~---eiivt~Ga   98 (393)
T COG0436          29 DVIDLSIGEPDFPTPEHIIEAAIEALEEGGT-HY-----T-PSAGIPELREAIAEKYKRRYGLDVDPEE---EIIVTAGA   98 (393)
T ss_pred             CEEEeCCCCCCCCCCHHHHHHHHHHHhcccC-CC-----C-CCCCCHHHHHHHHHHHHHHhCCCCCCCC---eEEEeCCH
Confidence            4789988887  5788899998887765210 12     1 23335567777778899998854  432   36668888


Q ss_pred             -HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC--CCCCCCHHHHHHHhhhhCCcEE
Q 013217           97 -PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE--STGLVDYDMLEKTAILFRPKLI  173 (447)
Q Consensus        97 -~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~id~~~l~~~~~~~~~kli  173 (447)
                       +|+..+++++++|||+|++++|.|..+.        ..+.+.|.  ++++++++.  .++.+|+++|++++++ +||+|
T Consensus        99 ~~al~~~~~a~~~pGDeVlip~P~Y~~y~--------~~~~~~gg--~~v~v~l~~~~~~f~~d~~~l~~~i~~-ktk~i  167 (393)
T COG0436          99 KEALFLAFLALLNPGDEVLIPDPGYPSYE--------AAVKLAGG--KPVPVPLDEEENGFKPDLEDLEAAITP-KTKAI  167 (393)
T ss_pred             HHHHHHHHHHhcCCCCEEEEeCCCCcCHH--------HHHHhcCC--EEEEEeCCcCccCCcCCHHHHHhhcCc-cceEE
Confidence             9999999999999999999999877653        24456666  555555543  3689999999999999 99999


Q ss_pred             EEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhcccccccc-CCCCCC--c---ccEEEeCCCccc--CCCCCc
Q 013217          174 IAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASV-VADPFK--Y---CDVVTTTTHKSL--RGPRGG  240 (447)
Q Consensus       174 i~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~~~~~--~---~Di~~~s~~K~l--~Gp~gG  240 (447)
                      ++++||||+  ..   .+++|+++|++||+++++|++ +.++++.+. +++.+.  .   .-+++.|++|++  +|+|.|
T Consensus       168 ~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEi-Y~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG  246 (393)
T COG0436         168 ILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEI-YEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIG  246 (393)
T ss_pred             EEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehh-hhhcccCCCCcCCHhhcCCCcceEEEEeccccccccccccee
Confidence            999999997  33   478999999999999999999 588888773 444332  2   247889999985  799999


Q ss_pred             eEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcC-hhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeC
Q 013217          241 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQS-PEFKVYQNKVVSNCRALASRLVEL-GYKLVSG  318 (447)
Q Consensus       241 ~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~  318 (447)
                      |++++++     ++.+.+.+.......+.+...+.++. .||+.-.. ...+...+...++++.+.+.|.+. |+.+..+
T Consensus       247 ~~v~~~~-----~l~~~~~~~~~~~~~~~~~~~Q~aa~-~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~  320 (393)
T COG0436         247 WVVGPPE-----ELIAALRKLKSYLTSCAPTPAQYAAI-AALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKP  320 (393)
T ss_pred             EeecChH-----HHHHHHHHHHHhcccCCCHHHHHHHH-HHhcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccC
Confidence            9999942     67776664333333455555555554 46665322 234555578899999999999985 5888774


Q ss_pred             CCCCeeEEecCCCCCCCHHH-HHHHHhhcCeEEccCCCCCCC-CC-CCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          319 GSDNHLVLVDLRPMGIDGAR-VEKILDMASITLNKNSVPGDK-SA-LVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       319 ~~~~~~~~v~~~~~~~~~~~-~~~~L~~~gI~v~~~~~p~~~-~~-~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      +...+++|++++.. .+..+ +.++|++.||.+    +||.. +. ...+++|++..  +.    ++++++..+.|.+.+
T Consensus       321 p~Ga~Y~~~~i~~~-~d~~~f~~~Ll~~~gV~v----~PG~~Fg~~~g~~~vRis~~--~~----~~~l~~a~~rl~~~~  389 (393)
T COG0436         321 PEGAFYLFPKIPEL-LDSEEFAKKLLEEAGVAV----VPGSGFGEPPGEGYVRLSLA--TS----EETLEEALRRLARFL  389 (393)
T ss_pred             CCeeEEEEeecCCC-CCHHHHHHHHHHhCCEEE----ecccccCCCCCCCeEEEEEe--cC----HHHHHHHHHHHHHHH
Confidence            34577788888654 45544 556778899999    56654 22 24568999853  33    577777777777665


Q ss_pred             H
Q 013217          396 E  396 (447)
Q Consensus       396 ~  396 (447)
                      .
T Consensus       390 ~  390 (393)
T COG0436         390 A  390 (393)
T ss_pred             H
Confidence            4

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.97  E-value=3.6e-29  Score=247.09  Aligned_cols=335  Identities=19%  Similarity=0.222  Sum_probs=232.4

Q ss_pred             CCCHHHHHHHhhhhhccCCCCCCCCcccC-chhHHHHHHHHHHHHHHHHcCCCCCccceeeecC-CcHHHHHHHHHHhcC
Q 013217           31 FTSRAVMEAVGSCLTNKYSEGLPGKRYYG-GNEYIDELETLCQKRALAAFNLDENKWGVNVQPL-SGSPANFEVYTAILK  108 (447)
Q Consensus        31 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~-g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~-sGs~a~~~~~~al~~  108 (447)
                      +.|+.|++++.+.+....  +.++...|. +......+ +.+++++++++|++..+   +|..+ ++++++..++.++++
T Consensus        11 ~~p~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~---~v~~~~g~t~al~~~~~~~~~   84 (376)
T TIGR01977        11 PKPDEVYEAMADFYKNYG--GSPGRGRYRLALRASREV-EETRQLLAKLFNAPSSA---HVVFTNNATTALNIALKGLLK   84 (376)
T ss_pred             CCCHHHHHHHHHHHHhcC--CCCCcccchHHHHHHHHH-HHHHHHHHHHhCcCCCC---eEEEeCCHHHHHHHHHHhccC
Confidence            467899999988776421  122211111 11112222 34567899999987431   23334 556899989999999


Q ss_pred             CCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCCh
Q 013217          109 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDY  186 (447)
Q Consensus       109 pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~  186 (447)
                      +||+|++.+++|+++.....    ......|.  +++.++.+ .++.+|++++++++++ +|++|+++.+++++  ..|+
T Consensus        85 ~gd~vl~~~~~~~~~~~~~~----~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~~~~-~~~~v~~~~~~n~tG~~~~~  156 (376)
T TIGR01977        85 EGDHVITTPMEHNSVARPLE----CLKEQIGV--EITIVKCD-NEGLISPERIKRAIKT-NTKLIVVSHASNVTGTILPI  156 (376)
T ss_pred             CCCEEEECcchhhHHHHHHH----HHHHHcCc--EEEEEecC-CCCCcCHHHHHHhcCC-CCeEEEEECCCCCccccCCH
Confidence            99999999888776532110    01112243  45555555 4578999999999976 89999988766654  7899


Q ss_pred             HHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhh-----
Q 013217          187 PRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINN-----  260 (447)
Q Consensus       187 ~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~-----  260 (447)
                      ++|.++|+++|+++++|++|+.|..+.+....   ++|++++|+|||++||.| |++++++..     ....+..     
T Consensus       157 ~~i~~l~~~~~~~livD~a~~~g~~~~~~~~~---~~D~~~~s~~K~l~~p~g~g~l~~~~~~-----~~~~~~~~~~~~  228 (376)
T TIGR01977       157 EEIGELAQENGIFFILDAAQTAGVIPIDMTEL---AIDMLAFTGHKGLLGPQGTGGLYIREGI-----KLKPLKSGGTGS  228 (376)
T ss_pred             HHHHHHHHHcCCEEEEEhhhccCccCCCchhc---CCCEEEecccccccCCCCceEEEEcCCc-----CcCceecCCCcc
Confidence            99999999999999999999998775543322   589999999999999998 888777641     1000000     


Q ss_pred             ----------ccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEeeeCC-CC--CeeEE
Q 013217          261 ----------AVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGG-SD--NHLVL  326 (447)
Q Consensus       261 ----------~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~-~~--~~~~~  326 (447)
                                .......|+++...++++..+++++.+.+.+...++..+.++++.+.|.+ .|++++.+. +.  ..++.
T Consensus       229 ~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~  308 (376)
T TIGR01977       229 HSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVS  308 (376)
T ss_pred             ccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEE
Confidence                      00011246888888999999999988778888889999999999999986 678877531 11  23333


Q ss_pred             ecCCCCCCCHHHHHHHHhhc-CeEEccCCCCCC-----CCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217          327 VDLRPMGIDGARVEKILDMA-SITLNKNSVPGD-----KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       327 v~~~~~~~~~~~~~~~L~~~-gI~v~~~~~p~~-----~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~  393 (447)
                      +.+  .+.++.++.+.|.+. ||.++.+..-..     .++...+.||++++.++|    ++|+++++++|++
T Consensus       309 ~~~--~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t----~~dv~~~~~~l~~  375 (376)
T TIGR01977       309 FTV--EGIDSEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNT----EEEIEKLLEALSE  375 (376)
T ss_pred             EEE--CCCCHHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCC----HHHHHHHHHHHhh
Confidence            444  356788899999876 999976421100     012234689999999988    9999999999875

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.97  E-value=1.5e-28  Score=233.56  Aligned_cols=342  Identities=16%  Similarity=0.153  Sum_probs=251.2

Q ss_pred             CeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHH
Q 013217           22 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE  101 (447)
Q Consensus        22 ~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~  101 (447)
                      .+.|+|++..+++.|+++|.....+++           ..++.+.++ .+.+.++++|+.+...  +.+...||+.++.+
T Consensus         6 ~~Ll~PGP~~v~~~V~~am~~~~~~h~-----------s~~F~~~~~-~~~~~L~~v~~t~~~~--~~ll~gsGt~amEA   71 (383)
T COG0075           6 RLLLTPGPVPVPPRVLLAMARPMVGHR-----------SPDFVGIMK-EVLEKLRKVFGTENGD--VVLLSGSGTLAMEA   71 (383)
T ss_pred             ceeeeCCCCCCCHHHHHHhcCCCCCCC-----------CHHHHHHHH-HHHHHHHHHhcCCCCc--EEEEcCCcHHHHHH
Confidence            588999999999999999987655432           234444444 5667899999998422  35667899999999


Q ss_pred             HHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh-CCcEEEEcCCCC
Q 013217          102 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-RPKLIIAGASAY  180 (447)
Q Consensus       102 ~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~-~~klii~~~~~~  180 (447)
                      ++.++++|||+||+...   |.+..++.   ..+...|.  +++.+... ++..+|++++++++++. ..++|.+.+.-+
T Consensus        72 av~sl~~pgdkVLv~~n---G~FG~R~~---~ia~~~g~--~v~~~~~~-wg~~v~p~~v~~~L~~~~~~~~V~~vH~ET  142 (383)
T COG0075          72 AVASLVEPGDKVLVVVN---GKFGERFA---EIAERYGA--EVVVLEVE-WGEAVDPEEVEEALDKDPDIKAVAVVHNET  142 (383)
T ss_pred             HHHhccCCCCeEEEEeC---ChHHHHHH---HHHHHhCC--ceEEEeCC-CCCCCCHHHHHHHHhcCCCccEEEEEeccC
Confidence            99999999999999863   33333321   23345555  34444444 55689999999999852 456777764433


Q ss_pred             C--CCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCc--------
Q 013217          181 P--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPV--------  249 (447)
Q Consensus       181 ~--~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~--------  249 (447)
                      +  ...|+++|+++|++||++++||++.+.|....+...+   ++|+++++.+|+|.+|+| |++.++++..        
T Consensus       143 STGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~~~~vd~w---giDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~  219 (383)
T COG0075         143 STGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEW---GIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKH  219 (383)
T ss_pred             cccccCcHHHHHHHHHHcCCEEEEEecccCCCcccchhhc---CccEEEecCchhccCCCccceeEECHHHHHHHhcCCC
Confidence            3  3779999999999999999999998878776555444   499999999999999999 9999987520        


Q ss_pred             --chhhHHHHhhhccC-CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCC-CCCeeE
Q 013217          250 --LGVELESAINNAVF-PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGG-SDNHLV  325 (447)
Q Consensus       250 --~~~~~~~~i~~~~~-~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~~  325 (447)
                        .+.++....+.... ..+..||..+.+.++..|++.++.+|++.+++++.++++++++.+.+.|++++... ..+..+
T Consensus       220 ~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~alGl~~~~~~~~~s~tv  299 (383)
T COG0075         220 PSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEALGLELFADPERRSPTV  299 (383)
T ss_pred             CceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCccccCcccCCCce
Confidence              01111111111111 23456889999999999999999999999999999999999999999999988732 123333


Q ss_pred             EecCCCCCCCHHHHHH-HHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          326 LVDLRPMGIDGARVEK-ILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       326 ~v~~~~~~~~~~~~~~-~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      ..-..+.+++..++.. .++++||.+..+.     .+.....+|||++...+    .+|+...+.+|..++...
T Consensus       300 ta~~~P~g~~~~~~~~~~~~~~g~~i~gg~-----~~l~gkifRIGhMG~~~----~~dv~~~l~ale~~L~~~  364 (383)
T COG0075         300 TAIKVPEGVDDKKVRRALLKEYGVEIAGGQ-----GPLKGKIFRIGHMGNVR----PEDVLAALAALEAALREL  364 (383)
T ss_pred             EEEECCCCCCcHHHHHHHHHhCCEEecccc-----cccCccEEEEecCccCC----HHHHHHHHHHHHHHHHHc
Confidence            3334566777655555 5567899985432     34455689999987555    999999999999999865

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.97  E-value=3.9e-29  Score=248.54  Aligned_cols=336  Identities=20%  Similarity=0.209  Sum_probs=229.2

Q ss_pred             ecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-HHHHHHHH
Q 013217           26 IASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYT  104 (447)
Q Consensus        26 ~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a~~~~~~  104 (447)
                      .++..++|+.+++++...+...+  ..++..| ........+.+.+++.+++++|+++++    |..++|+ +++..++.
T Consensus        23 ~~~~~~~p~~v~~a~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~l~~~ia~~~~~~~~~----v~~~~~~t~~l~~~~~   95 (397)
T TIGR01976        23 NPAGTQIPQSVADAVSAALTRSN--ANRGGAY-ESSRRADQVVDDAREAVADLLNADPPE----VVFGANATSLTFLLSR   95 (397)
T ss_pred             CCccCCCCHHHHHHHHHHHHhcC--CCCCCCc-hHHHHHHHHHHHHHHHHHHHcCCCCCe----EEEeCCHHHHHHHHHH
Confidence            46777889999999988775422  2222222 222222233345678899999998653    2334554 77666655


Q ss_pred             Hh---cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCC
Q 013217          105 AI---LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP  181 (447)
Q Consensus       105 al---~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~  181 (447)
                      ++   ++|||+|++.+++|.+++..+.    ..+...|.  +++.++++++++.+|++++++++++ +|++|+++.++++
T Consensus        96 ~~~~~~~~gd~vl~~~~~~~s~~~~~~----~~~~~~g~--~~~~~~~~~~~~~~~~~~l~~~i~~-~~~lv~i~~~~n~  168 (397)
T TIGR01976        96 AISRRWGPGDEVIVTRLDHEANISPWL----QAAERAGA--KVKWARVDEATGELHPDDLASLLSP-RTRLVAVTAASNT  168 (397)
T ss_pred             HHHhcCCCCCEEEEcCCchHhHHHHHH----HHHHhcCC--EEEEEeccccCCCcCHHHHHHhcCC-CceEEEEeCCCCC
Confidence            54   7899999999988877542210    01233454  4445556544678999999999976 8999999866665


Q ss_pred             C--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCceEEeecCCcchhhHHHHhh
Q 013217          182 R--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAIN  259 (447)
Q Consensus       182 ~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~  259 (447)
                      +  ..|+++|.++|+++|+++++|++|+.|....++...   ++|++++|+|||+ ||+.|++++++      ++.+.+.
T Consensus       169 tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~---~~d~~~~s~~K~~-g~~~G~l~~~~------~~~~~l~  238 (397)
T TIGR01976       169 LGSIVDLAAITELVHAAGALVVVDAVHYAPHGLIDVQAT---GADFLTCSAYKFF-GPHMGILWGRP------ELLMNLP  238 (397)
T ss_pred             CCccCCHHHHHHHHHHcCCEEEEehhhhccccCCCHHHc---CCCEEEEechhhc-CCceEEEEEcH------HHHhhCC
Confidence            4  789999999999999999999999776443222111   4899999999987 78889999987      5555544


Q ss_pred             hccCC---------CCCCCCcHHHHHHHHHHHHHhcChh--------------HHHHHHHHHHHHHHHHHHHHHC-CcEe
Q 013217          260 NAVFP---------GLQGGPHNHTIGGLAVCLKHAQSPE--------------FKVYQNKVVSNCRALASRLVEL-GYKL  315 (447)
Q Consensus       260 ~~~~~---------~~~g~p~~~~~aal~~al~~~~~~~--------------~~~~~~~~~~~~~~l~~~L~~~-g~~~  315 (447)
                      .....         ...|+++...++++..|++.+...+              +++..++..+.++++.+.|++. ++++
T Consensus       239 ~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~  318 (397)
T TIGR01976       239 PYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTL  318 (397)
T ss_pred             CccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            32111         1257888888889988888765433              4555666777788888888875 4888


Q ss_pred             eeC---CCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCC------CCCCCCCeEEEecCccccCCCCHHHHHH
Q 013217          316 VSG---GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD------KSALVPGGIRIGSPAMTTRGFSEKEFVA  386 (447)
Q Consensus       316 ~~~---~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~------~~~~~~~~iRig~~~~~~~g~~~~di~~  386 (447)
                      +.+   ....+++.+.+.  +.+..++.+.|.++||.++.+.....      ..+...+.||+|++.++|    ++|+++
T Consensus       319 ~~~~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t----~~di~~  392 (397)
T TIGR01976       319 YGVARLAARVPTVSFTVH--GLPPQRVVRRLADQGIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHYNT----AEEVDR  392 (397)
T ss_pred             eCCCCccCCCceEEEEeC--CcCHHHHHHHHHHCCeEEEeCccchHHHHHHhCCCCCCCeEEEEeeccCC----HHHHHH
Confidence            754   123344444432  44678899999999999986421110      001124589999999998    999999


Q ss_pred             HHHHH
Q 013217          387 IADFI  391 (447)
Q Consensus       387 l~~~i  391 (447)
                      ++++|
T Consensus       393 l~~~l  397 (397)
T TIGR01976       393 LLEAL  397 (397)
T ss_pred             HHHhC
Confidence            98764

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.97  E-value=3.8e-29  Score=246.61  Aligned_cols=337  Identities=18%  Similarity=0.165  Sum_probs=236.8

Q ss_pred             ecCCCCCCHHHHHHHhhhhhccCCCCCCCCc-ccCchhHHHHHHHHHHHHHHHHcCCC-CCccceeeecCCcHHHHHHHH
Q 013217           26 IASENFTSRAVMEAVGSCLTNKYSEGLPGKR-YYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVY  103 (447)
Q Consensus        26 ~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~-~~~g~~~~~~le~~~~~~~~~~~g~~-~~~~~~~v~~~sGs~a~~~~~  103 (447)
                      ..+.+++|+.+++++.+.+...  .++|... +..+....+ ....+++++++++|++ ++++   +.++++++++..++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~v---~~~~g~t~a~~~~~   78 (373)
T cd06453           5 NAATSQKPQPVIDAIVDYYRHY--NANVHRGVHELSARATD-AYEAAREKVARFINAPSPDEI---IFTRNTTEAINLVA   78 (373)
T ss_pred             CccccCCCHHHHHHHHHHHHhc--CCCCCCCccHHHHHHHH-HHHHHHHHHHHHhCCCCCCeE---EEeCCHHHHHHHHH
Confidence            4677788999999998888653  2454432 222223333 3335678999999998 4422   22344558988888


Q ss_pred             HHhcC---CCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCC
Q 013217          104 TAILK---PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY  180 (447)
Q Consensus       104 ~al~~---pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~  180 (447)
                      .++..   +||+|++.+++|++.+....    ...+..|.  +++.++++ +++.+|++++++.+.+ ++++|+++.+++
T Consensus        79 ~~l~~~~~~g~~vl~~~~~~~~~~~~~~----~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~l~~-~~~~v~~~~~~~  150 (373)
T cd06453          79 YGLGRANKPGDEIVTSVMEHHSNIVPWQ----QLAERTGA--KLKVVPVD-DDGQLDLEALEKLLTE-RTKLVAVTHVSN  150 (373)
T ss_pred             HHhhhcCCCCCEEEECcchhHHHHHHHH----HHHhhcCc--EEEEeecC-CCCCcCHHHHHHHhcC-CceEEEEeCccc
Confidence            88876   99999999988877532111    01123454  44444455 4678999999999987 899999987666


Q ss_pred             CC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCceEEeecCCcchhhHHHHh
Q 013217          181 PR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAI  258 (447)
Q Consensus       181 ~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i  258 (447)
                      ++  ..|+++|.++|+++|+++++|++|+.|..+.+....   ++|++++|+||++++++.|++++++      ++.+.+
T Consensus       151 ~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~d~~~~s~~K~~~~~g~g~~~~~~------~~~~~~  221 (373)
T cd06453         151 VLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHMPVDVQDL---GCDFLAFSGHKMLGPTGIGVLYGKE------ELLEEM  221 (373)
T ss_pred             ccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCceeeecccc---CCCEEEeccccccCCCCcEEEEEch------HHhhcC
Confidence            54  779999999999999999999999877654332211   4899999999999875559999887      455544


Q ss_pred             hhccCC--------------------CCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeee
Q 013217          259 NNAVFP--------------------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVS  317 (447)
Q Consensus       259 ~~~~~~--------------------~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~  317 (447)
                      ......                    ...|+|+...+.++..+++.+...++++..++..+.++++.+.|++. |++++.
T Consensus       222 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  301 (373)
T cd06453         222 PPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRVYG  301 (373)
T ss_pred             CCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeC
Confidence            432110                    11367888888888889998877778888888899999999999885 688774


Q ss_pred             CC-CCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC---CCCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217          318 GG-SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK---SALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  391 (447)
Q Consensus       318 ~~-~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~---~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i  391 (447)
                      +. ....++++.+.  +.+..++.+.|.++||.+..+......   ..-.++.||++++.++|    ++|+++++++|
T Consensus       302 ~~~~~~~~~~~~~~--~~~~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t----~~di~~~~~~l  373 (373)
T cd06453         302 DAEDRAGVVSFNLE--GIHPHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNT----EEEIDALVEAL  373 (373)
T ss_pred             CccccCCeEEEEEC--CcCHHHHHHHHHHCCEEeccCccchhHHHHHhCCCCeEEEEecCCCC----HHHHHHHHhhC
Confidence            32 23344455543  456788999999999998654211000   00124589999999988    99999998864

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>PRK02948 cysteine desulfurase; Provisional

Probab=99.97  E-value=3.9e-29  Score=247.13  Aligned_cols=342  Identities=13%  Similarity=0.126  Sum_probs=239.1

Q ss_pred             ecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCc-HHHHHHHHH
Q 013217           26 IASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYT  104 (447)
Q Consensus        26 ~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sG-s~a~~~~~~  104 (447)
                      .++..++|+.|++++..++...+  ++++..+..+....+.+ +.+++.+++++|+++++    |..++| ++++..++.
T Consensus         6 ~a~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~r~~la~~~g~~~~~----i~~~~g~t~a~~~~~~   78 (381)
T PRK02948          6 YAATTPMSKEALQTYQKAASQYF--GNESSLHDIGGTASSLL-QVCRKTFAEMIGGEEQG----IYFTSGGTESNYLAIQ   78 (381)
T ss_pred             CCCCCCCCHHHHHHHHHHHHhcC--CCCccccHHHHHHHHHH-HHHHHHHHHHhCCCCCe----EEEeCcHHHHHHHHHH
Confidence            46677889999999988776533  44544444444444444 46788999999998753    334666 588888887


Q ss_pred             Hhc----CCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCC
Q 013217          105 AIL----KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY  180 (447)
Q Consensus       105 al~----~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~  180 (447)
                      +++    ++||+|++.+.+|++......     .+...|.  ++..++++ +++.+|++++++.+++ ++++|+++++++
T Consensus        79 ~~~~~~~~~g~~vv~~~~~h~s~~~~~~-----~~~~~g~--~v~~v~~~-~~~~~d~~~l~~~l~~-~~~lv~~~~~~n  149 (381)
T PRK02948         79 SLLNALPQNKKHIITTPMEHASIHSYFQ-----SLESQGY--TVTEIPVD-KSGLIRLVDLERAITP-DTVLASIQHANS  149 (381)
T ss_pred             HHHHhccCCCCEEEECCcccHHHHHHHH-----HHHhCCC--EEEEEeeC-CCCCCCHHHHHHhcCC-CCEEEEEECCcC
Confidence            775    679999998888876543211     1223344  44455565 4578999999999876 889999987776


Q ss_pred             CC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHH
Q 013217          181 PR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA  257 (447)
Q Consensus       181 ~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~  257 (447)
                      ++  ..|+++|.++|+++|+++++|++|..|..+.+....   ++|++++|+||+ .||.| |+++++++.     ....
T Consensus       150 ~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~~~~~~~~~---~~d~~~~s~~K~-~gp~G~G~l~~~~~~-----~~~~  220 (381)
T PRK02948        150 EIGTIQPIAEIGALLKKYNVLFHSDCVQTFGKLPIDVFEM---GIDSLSVSAHKI-YGPKGVGAVYINPQV-----RWKP  220 (381)
T ss_pred             CcEeehhHHHHHHHHHHcCCEEEEEChhhccccccCcccC---CCCEEEecHHhc-CCCCcEEEEEEcCCC-----CCCC
Confidence            65  789999999999999999999999888654443322   489999999996 57888 999988741     0111


Q ss_pred             hhh---ccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCe-e-EEecCCCC
Q 013217          258 INN---AVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNH-L-VLVDLRPM  332 (447)
Q Consensus       258 i~~---~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~-~-~~v~~~~~  332 (447)
                      +..   .......|+++...++++..+++... .+.++..+++.++++++.+.|++.|+++...+..++ + .++.+...
T Consensus       221 ~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~i~~~~~~  299 (381)
T PRK02948        221 VFPGTTHEKGFRPGTVNVPGIAAFLTAAENIL-KNMQEESLRFKELRSYFLEQIQTLPLPIEVEGHSTSCLPHIIGVTIK  299 (381)
T ss_pred             cccCCCCCCCcCCCCccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCccCcCCEEEEEeC
Confidence            100   00111357888888988888988765 356777899999999999999988876654321121 1 12322233


Q ss_pred             CCCHHHHHHHHhhcCeEEccCCC-------CCC-------CCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          333 GIDGARVEKILDMASITLNKNSV-------PGD-------KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       333 ~~~~~~~~~~L~~~gI~v~~~~~-------p~~-------~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      ++++.++...|.++||.++.+..       |..       ..+...+.+|+|++.++|    ++|++++.++|+++++.
T Consensus       300 ~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t----~~di~~l~~~l~~~~~~  374 (381)
T PRK02948        300 GIEGQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTT----KDQIDTTIHALETIGNQ  374 (381)
T ss_pred             CCCHHHHHHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCC----HHHHHHHHHHHHHHHHH
Confidence            45677788888889999986421       100       001124689999999988    99999999999987753

>PLN02651 cysteine desulfurase

Probab=99.97  E-value=4.3e-29  Score=245.07  Aligned_cols=328  Identities=17%  Similarity=0.196  Sum_probs=228.2

Q ss_pred             ecCCCCCCHHHHHHHhhhhhccCCCCCCCC-cccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHH
Q 013217           26 IASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYT  104 (447)
Q Consensus        26 ~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~-~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~  104 (447)
                      .++..++|+.|++++..++.+.+  ++|+. .+..+....+.++ .+++.+++++|++++++   +.++++++++..++.
T Consensus         5 ~a~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~r~~la~~~g~~~~~v---~~t~~~t~a~~~~l~   78 (364)
T PLN02651          5 MQATTPIDPRVLDAMLPFLIEHF--GNPHSRTHLYGWESEDAVE-KARAQVAALIGADPKEI---IFTSGATESNNLAIK   78 (364)
T ss_pred             CcCCCCCCHHHHHHHHHHHHhCC--CCCChhhhHHHHHHHHHHH-HHHHHHHHHhCCCCCeE---EEeCCHHHHHHHHHH
Confidence            46677899999999998886544  45543 1212223333344 67789999999987643   223455688776665


Q ss_pred             Hh----cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCC
Q 013217          105 AI----LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY  180 (447)
Q Consensus       105 al----~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~  180 (447)
                      ++    .++||+|++.+.+|++......     .+...|.  +++.++++ +++.+|++++++++++ ++++|+++.+++
T Consensus        79 ~~~~~~~~~g~~vl~~~~~h~s~~~~~~-----~~~~~g~--~v~~v~~~-~~~~~d~~~l~~~i~~-~t~lv~v~~~~n  149 (364)
T PLN02651         79 GVMHFYKDKKKHVITTQTEHKCVLDSCR-----HLQQEGF--EVTYLPVK-SDGLVDLDELAAAIRP-DTALVSVMAVNN  149 (364)
T ss_pred             HHHHhccCCCCEEEEcccccHHHHHHHH-----HHHhcCC--EEEEEccC-CCCcCCHHHHHHhcCC-CcEEEEEECCCC
Confidence            54    5789999999888876532211     1122343  44455555 4578999999999987 899998886555


Q ss_pred             CC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHH
Q 013217          181 PR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA  257 (447)
Q Consensus       181 ~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~  257 (447)
                      ++  ..|+++|.++|+++|+++++|++|+.|.++.++...   ++|++++|+||| .||.| |+++++++      ....
T Consensus       150 ~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~~~~~~~~---~~D~~~~s~hK~-~gp~G~g~l~v~~~------~~~~  219 (364)
T PLN02651        150 EIGVIQPVEEIGELCREKKVLFHTDAAQAVGKIPVDVDDL---GVDLMSISGHKI-YGPKGVGALYVRRR------PRVR  219 (364)
T ss_pred             CceecccHHHHHHHHHHcCCEEEEEcchhhCCcccCcccC---CCCEEEechhhh-CCCCceEEEEEcCC------CCCC
Confidence            54  789999999999999999999999998776554433   489999999997 78998 99999884      2233


Q ss_pred             hhhccC------CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH--CCcEeeeCC-CCCe-eEEe
Q 013217          258 INNAVF------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE--LGYKLVSGG-SDNH-LVLV  327 (447)
Q Consensus       258 i~~~~~------~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~-~~~~-~~~v  327 (447)
                      +.....      ....|||+...++++..|++.+.. +.++..++..+.++++.+.|++  .|++++.+. .+.+ ..++
T Consensus       220 l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~~-~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~  298 (364)
T PLN02651        220 LEPLMSGGGQERGRRSGTENTPLVVGLGAACELAMK-EMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTL  298 (364)
T ss_pred             CCccccCCCccCCccCCCccHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEE
Confidence            322211      123689999999999999998874 4577778888889999999875  388888741 1111 1133


Q ss_pred             cCCCCCCCHHHHHHHHhhcCeEEccCC--CCCC-----C----C---CCCCCeEEEecCccccCCCCHHHHH
Q 013217          328 DLRPMGIDGARVEKILDMASITLNKNS--VPGD-----K----S---ALVPGGIRIGSPAMTTRGFSEKEFV  385 (447)
Q Consensus       328 ~~~~~~~~~~~~~~~L~~~gI~v~~~~--~p~~-----~----~---~~~~~~iRig~~~~~~~g~~~~di~  385 (447)
                      .+...+++++++.+.|.+  |.++.+.  -+..     .    +   ....+.+|+|++.+||    ++|++
T Consensus       299 ~~~~~~~~~~~~~~~L~~--i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t----~~did  364 (364)
T PLN02651        299 NLSFAYVEGESLLMGLKE--VAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTT----EEEVD  364 (364)
T ss_pred             EEEeCCCCHHHHHHHhCC--EEEEchhhcCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCC----HHHcC
Confidence            333346788899999976  8887642  1110     0    0   0124689999999999    88874

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.97  E-value=2e-28  Score=242.12  Aligned_cols=342  Identities=17%  Similarity=0.203  Sum_probs=237.1

Q ss_pred             ecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC-CCCccceeeecCCcH-HHHHHHH
Q 013217           26 IASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL-DENKWGVNVQPLSGS-PANFEVY  103 (447)
Q Consensus        26 ~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~-~~~~~~~~v~~~sGs-~a~~~~~  103 (447)
                      .++.++.++.|++++..++.+.|  ++|+..+..+......++ .++..+.+.+|+ ++++    |.+++|+ +++..++
T Consensus         5 ~aa~~~~~~~v~~~~~~~~~~~~--~n~~~~~~~~~~~~~~l~-~a~~~~~~~~~~~~~~~----i~~t~g~teal~~~~   77 (382)
T TIGR03403         5 NNATTMLDPKVKELMDPFFCDIY--GNPNSLHQFGTATHPAIA-EALDKLYKGINARDLDD----IIITSCATESNNWVL   77 (382)
T ss_pred             CcCCCCCCHHHHHHHHHHHHhcC--cCCccccHHHHHHHHHHH-HHHHHHHHHcCcCCCCe----EEEeCCHHHHHHHHH
Confidence            35677889999999999887654  455543333344455665 345566677787 4543    3346665 8888888


Q ss_pred             HHhc-----CC-CCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcC
Q 013217          104 TAIL-----KP-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA  177 (447)
Q Consensus       104 ~al~-----~p-gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~  177 (447)
                      .++.     ++ +|+|++...+|+++.....     .+...|.  +++.++++ +++.+|++++++++++ ++++|+++.
T Consensus        78 ~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~-----~~~~~G~--~v~~v~~~-~~g~~d~~~l~~~i~~-~t~lv~~~~  148 (382)
T TIGR03403        78 KGVYFDEILKGGKNHIITTEVEHPAVRATCA-----FLESLGV--EVTYLPIN-EQGTITAEQVREAITE-KTALVSVMW  148 (382)
T ss_pred             HHHHHhhcccCCCCEEEEcCCccHHHHHHHH-----HHHHCCC--EEEEEecC-CCCCCCHHHHHHhccc-CCeEEEEEc
Confidence            7752     55 4789999888877643221     1223343  55555565 4578999999999977 899998886


Q ss_pred             CCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhH
Q 013217          178 SAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVEL  254 (447)
Q Consensus       178 ~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~  254 (447)
                      ++|++  ..|+++|.++|+++|+++++|++|+.|.++.++...   ++|++++|+||| .||+| |+++++++..    +
T Consensus       149 ~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~~~~~~~~---~~D~~~~s~~K~-~gp~G~g~l~vr~~~~----~  220 (382)
T TIGR03403       149 ANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKIPVDVQKA---GVDFLSFSAHKF-HGPKGVGGLYIRKGVE----L  220 (382)
T ss_pred             ccCCCccccCHHHHHHHHHHcCCEEEEechhhcCCCccCcccc---CCCEEEEcchhh-CCCCceEEEEECCCCC----C
Confidence            66664  789999999999999999999999887654433222   489999999997 58988 9999887421    1


Q ss_pred             HHHhh--hccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEeeeCCC--CCeeEEecC
Q 013217          255 ESAIN--NAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGS--DNHLVLVDL  329 (447)
Q Consensus       255 ~~~i~--~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~--~~~~~~v~~  329 (447)
                      ...+.  ........|+++...+.+++.+++.... ..+...+++.+.++++.+.|.+ .|++++.+..  ..+++.+.+
T Consensus       221 ~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~-~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~  299 (382)
T TIGR03403       221 TPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLANE-YLDFEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISI  299 (382)
T ss_pred             CCcccCCCCCCCcccCCcChHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEe
Confidence            01010  0011122578899999888989887653 3566677888888899999987 5788775421  123444444


Q ss_pred             CCCCCCHHHHHHHHhhcCeEEccCCC--CCCC------------CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          330 RPMGIDGARVEKILDMASITLNKNSV--PGDK------------SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       330 ~~~~~~~~~~~~~L~~~gI~v~~~~~--p~~~------------~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                        .++++..+.+.|.++||.++.++.  +...            .+...+.||+|++.+||    ++|++++++.|++++
T Consensus       300 --~~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t----~~did~~~~~l~~~~  373 (382)
T TIGR03403       300 --KGVEGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTT----EEEIDYTIEVFKKAV  373 (382)
T ss_pred             --CCCCHHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCC----HHHHHHHHHHHHHHH
Confidence              356788888889999999986421  1110            01123579999999999    999999999999887


Q ss_pred             HHH
Q 013217          396 EIT  398 (447)
Q Consensus       396 ~~~  398 (447)
                      +..
T Consensus       374 ~~~  376 (382)
T TIGR03403       374 QRL  376 (382)
T ss_pred             HHH
Confidence            653

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.97  E-value=7.2e-28  Score=236.53  Aligned_cols=334  Identities=14%  Similarity=0.076  Sum_probs=231.2

Q ss_pred             cCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHH
Q 013217           21 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  100 (447)
Q Consensus        21 ~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~  100 (447)
                      +.+.|+|++..++++|++++.....+            .+.++.+.++ .+++.+++++|+++++. ..+.+.||++++.
T Consensus         3 ~~~l~~pgp~~~~~~v~~~~~~~~~~------------~~~~~~~~~~-~~r~~la~l~~~~~~~~-~i~~t~~~t~al~   68 (363)
T TIGR02326         3 NYLLLTPGPLTTSRTVKEAMLFDWCT------------WDSDYNIVVE-QIRQQLLALATAEEGYT-SVLLQGSGTFAVE   68 (363)
T ss_pred             ceeEecCCCCCCCHHHHHHhCCCCCC------------CChHHHHHHH-HHHHHHHHHhCCCCCce-EEEEcCCCHHHHH
Confidence            45678999999999999998654311            1234455554 57889999999975321 1234567789999


Q ss_pred             HHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh-CCcEEEEcCCC
Q 013217          101 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-RPKLIIAGASA  179 (447)
Q Consensus       101 ~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~-~~klii~~~~~  179 (447)
                      .++.+++.+||++++..+.+.+.   .+.   ..+...|.  +++.++++ +++.+|+++++++++.. ++++|.+..+.
T Consensus        69 ~~~~~l~~~~~~vlv~~~~~~~~---~~~---~~a~~~g~--~~~~v~~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~~~  139 (363)
T TIGR02326        69 AVIGSAVPKDGKLLVVINGAYGA---RIV---QIAEYLGI--PHHVVDTG-EVEPPDVVEVEAILAADPAITHIALVHCE  139 (363)
T ss_pred             HHHHhcCCCCCeEEEEeCChhhH---HHH---HHHHHcCC--ceEEEeCC-CCCCCCHHHHHHHHhhCCCccEEEEEeec
Confidence            99999999999877755432211   000   11233444  34444454 45679999999998762 35666666444


Q ss_pred             CCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHH
Q 013217          180 YPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES  256 (447)
Q Consensus       180 ~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~  256 (447)
                      +++  ..|+++|.++|+++|+++++|++|+.|..+.++...   ++|++++|+||||+||.| |++++++      +..+
T Consensus       140 ~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~~~~~~~~---~~D~~~~s~~K~l~~p~G~G~l~~~~------~~~~  210 (363)
T TIGR02326       140 TTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIPIDIAEL---HIDYLISSANKCIQGVPGFGFVIARQ------AELA  210 (363)
T ss_pred             CCccccCcHHHHHHHHHHcCCEEEEEccccccCcccchhhc---CccEEEecCccccccCCcceEEEECH------HHHH
Confidence            433  789999999999999999999999877654433222   489999999999999988 9999987      3433


Q ss_pred             Hhhhcc----------------CCC-CCCCCcHHHHHHHHHHHHHhcCh-hHHHHHHHHHHHHHHHHHHHHHCCcEeeeC
Q 013217          257 AINNAV----------------FPG-LQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVELGYKLVSG  318 (447)
Q Consensus       257 ~i~~~~----------------~~~-~~g~p~~~~~aal~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~  318 (447)
                      ++....                .++ ...+++.+.+.++..|++.+... ++++..+++.++++++.+.|.+.|+.++.+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~  290 (363)
T TIGR02326       211 ACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRALGFEPLLD  290 (363)
T ss_pred             HhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCCeeccC
Confidence            332100                011 12356677788888888877554 477788999999999999999899887653


Q ss_pred             C-CCCe-eEEecCCCC-CCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          319 G-SDNH-LVLVDLRPM-GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       319 ~-~~~~-~~~v~~~~~-~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      . ..+. ..++.+.+. ..+...+.+.|.++||.++.+..+      ...+||+|++.+++    .+|+++++++|++++
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gi~v~~g~~~------~~~~iRi~~~~~~~----~edv~~~l~~l~~~l  360 (363)
T TIGR02326       291 DEIQSPIITSFYSPEDPDYRFADFYQRLKEQGFVIYPGKVS------QVDCFRIGNIGEVD----AADITRLLTAIGKAM  360 (363)
T ss_pred             cccCCceEEEEECCCCCCCCHHHHHHHHHHCCEEEECCcCC------CCCEEEEecCCCCC----HHHHHHHHHHHHHHh
Confidence            2 1232 234444321 246678889999999999654211      23589999877777    999999999998875


Q ss_pred             H
Q 013217          396 E  396 (447)
Q Consensus       396 ~  396 (447)
                      .
T Consensus       361 ~  361 (363)
T TIGR02326       361 Y  361 (363)
T ss_pred             C
Confidence            3

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.96  E-value=1e-27  Score=238.32  Aligned_cols=340  Identities=17%  Similarity=0.169  Sum_probs=232.1

Q ss_pred             ecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHH
Q 013217           26 IASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA  105 (447)
Q Consensus        26 ~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~a  105 (447)
                      .++..++|+.|++++..++...+  ++|+.+.+.........-+.+++.+++++|++++++   +.++++++++..++.+
T Consensus         9 ~aa~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v---~~~~g~t~a~~~~l~~   83 (402)
T TIGR02006         9 YAATTPVDPRVAEKMMPYLTEKF--GNPASRSHSFGWEAEEAVENARNQVAELIGADSREI---VFTSGATESNNLAIKG   83 (402)
T ss_pred             CCcCCCCCHHHHHHHHHHHHhcC--CCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeE---EEeCCHHHHHHHHHHH
Confidence            46667889999999988876543  445432111111122333466788999999987643   2234445888877766


Q ss_pred             h----cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCC
Q 013217          106 I----LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP  181 (447)
Q Consensus       106 l----~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~  181 (447)
                      +    .++||+|++..++|.+....+.     .+...|.  +++.++++ +++.+|++++++++++ ++++|+++.++++
T Consensus        84 l~~~~~~~g~~Vi~~~~~h~s~~~~~~-----~~~~~g~--~v~~v~~~-~~~~~d~~~l~~~l~~-~~~lv~v~~~~n~  154 (402)
T TIGR02006        84 IAHFYKSKGNHIITSKTEHKAVLDTCR-----YLEREGF--EVTYLPPK-SNGLIDLEELKAAIRD-DTILVSIMHVNNE  154 (402)
T ss_pred             HHHhhcCCCCEEEECCCccHHHHHHHH-----HHHhcCC--EEEEEccC-CCCcCCHHHHHHhcCC-CCEEEEEECCCcC
Confidence            5    3789999999988876543221     1112343  44555555 4578999999999977 7899988866665


Q ss_pred             C--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHh
Q 013217          182 R--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAI  258 (447)
Q Consensus       182 ~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i  258 (447)
                      +  ..|+++|.++|+++|+++++|++|+.|.++.++...   ++|++++|+||+ .||.| |+++++++      ...++
T Consensus       155 tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~~~~~~~~---~~D~~~~s~~K~-~gp~G~G~l~~~~~------~~~~~  224 (402)
T TIGR02006       155 IGVIQDIAAIGEICRERKVFFHVDAAQSVGKIPINVNEL---KVDLMSISGHKI-YGPKGIGALYVRRK------PRVRL  224 (402)
T ss_pred             ceecccHHHHHHHHHHcCCEEEEEcchhcCCcccCcccc---CCCEEEEehhhh-cCCCceEEEEEccC------CCCCC
Confidence            4  789999999999999999999999988765443322   489999999996 57988 99998873      22222


Q ss_pred             hhccC------CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEeeeCCC--CCeeEEecC
Q 013217          259 NNAVF------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGS--DNHLVLVDL  329 (447)
Q Consensus       259 ~~~~~------~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~--~~~~~~v~~  329 (447)
                      .....      ....|+++...++++..+++.+. .+++...++..+.++++.+.|++ .++.+..+..  ..+...+.+
T Consensus       225 ~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~~v~f  303 (402)
T TIGR02006       225 EALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAK-EEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRVPGNLNVSF  303 (402)
T ss_pred             CceecCCCccCCccCCCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEE
Confidence            22111      11357899999999999998876 46777778888888999999877 4676654321  112223444


Q ss_pred             CCCCCCHHHHHHHHhhcCeEEccCC--CCCCC------------CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          330 RPMGIDGARVEKILDMASITLNKNS--VPGDK------------SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       330 ~~~~~~~~~~~~~L~~~gI~v~~~~--~p~~~------------~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      .  +++++.+...|  .+|.++.+.  .+...            .....+.+|+|++.+||    ++|++++++.|++++
T Consensus       304 ~--~~~~~~~~~~l--~~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t----~edid~l~~~l~~~~  375 (402)
T TIGR02006       304 N--YVEGESLIMAL--KDLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTT----EEEIDYAVKLVKSAI  375 (402)
T ss_pred             e--CcCHHHHHHhc--CCEEEechhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCC----HHHHHHHHHHHHHHH
Confidence            3  34566666666  467665432  22111            01123689999999998    999999999999988


Q ss_pred             HHH
Q 013217          396 EIT  398 (447)
Q Consensus       396 ~~~  398 (447)
                      +..
T Consensus       376 ~~~  378 (402)
T TIGR02006       376 DKL  378 (402)
T ss_pred             HHH
Confidence            764

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.96  E-value=5.7e-27  Score=230.64  Aligned_cols=333  Identities=14%  Similarity=0.094  Sum_probs=231.5

Q ss_pred             eeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHH
Q 013217           23 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV  102 (447)
Q Consensus        23 i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~  102 (447)
                      ..++|+...+++.++++|...+..            ...++.+.+ +.+++.+++++|++++.. ..+.+.||+.++..+
T Consensus         7 ~~~~pgP~~~~~~~~~a~~~~~~~------------~~~~~~~~~-~~~~~~l~~l~~~~~~~~-~i~~~~~gt~~l~~~   72 (368)
T PRK13479          7 LLLTPGPLTTSRTVREAMLRDWGS------------WDDDFNALT-ASVRAKLVAIATGEEGYT-CVPLQGSGTFSVEAA   72 (368)
T ss_pred             eeecCCCCCCCHHHHHHhCCCCCC------------CChHHHHHH-HHHHHHHHHHhCCCCCce-EEEEcCCcHHHHHHH
Confidence            457899999999999998764311            112344444 466789999999965322 233457888999999


Q ss_pred             HHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh-CCcEEEEcCCCCC
Q 013217          103 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-RPKLIIAGASAYP  181 (447)
Q Consensus       103 ~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~-~~klii~~~~~~~  181 (447)
                      +.++..+||+|++.++.+.+..   +   ...+...|.  +++.++.+ +++.+|++++++.+++. ++++|++++++++
T Consensus        73 ~~~l~~~~~~vlv~~~~~~~~~---~---~~~~~~~g~--~~~~i~~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~  143 (368)
T PRK13479         73 IGSLVPRDGKVLVPDNGAYGAR---I---AQIAEYLGI--AHVVLDTG-EDEPPDAAEVEAALAADPRITHVALVHCETT  143 (368)
T ss_pred             HHhccCCCCeEEEEeCCchHHH---H---HHHHHHcCC--cEEEEECC-CCCCCCHHHHHHHHHhCCCCcEEEEEcccCc
Confidence            9999999999998875433220   0   011233454  34444454 34679999999988752 4567777766554


Q ss_pred             C--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHh
Q 013217          182 R--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAI  258 (447)
Q Consensus       182 ~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i  258 (447)
                      +  ..|+++|.++|+++|+++++|++|..|..+.++...   ++|++++|+|||+.||.| |++++++      +..+.+
T Consensus       144 tG~~~~~~~i~~l~~~~~~~livDa~~~~g~~~~~~~~~---~~d~~v~s~~K~l~g~~G~G~l~~~~------~~~~~~  214 (368)
T PRK13479        144 TGILNPLDEIAAVAKRHGKRLIVDAMSSFGAIPIDIAEL---GIDALISSANKCIEGVPGFGFVIARR------SELEAC  214 (368)
T ss_pred             cccccCHHHHHHHHHHcCCEEEEEcccccCCcccccccc---CceEEEecCccccccCCCceEEEECH------HHHHHh
Confidence            3  789999999999999999999988777543332222   489999999999999988 9999987      454444


Q ss_pred             hhccCC----------------CCCCCCcHHHHHHHHHHHHHhcCh-hHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCC-
Q 013217          259 NNAVFP----------------GLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVELGYKLVSGGS-  320 (447)
Q Consensus       259 ~~~~~~----------------~~~g~p~~~~~aal~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-  320 (447)
                      .....+                ....+++...++++..+++.+... ++++..+++.++++.+.+.|.+.|++++.++. 
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~  294 (368)
T PRK13479        215 KGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRALGFEPLLDAEI  294 (368)
T ss_pred             hcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCCcccCCchh
Confidence            332111                111267777888888888877544 36777889999999999999999988764321 


Q ss_pred             CCe-eEEecCCC-CCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          321 DNH-LVLVDLRP-MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       321 ~~~-~~~v~~~~-~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      .+. ...+.+.. .+++..++.+.|.++||.+..+..+      ..+.+|+|+..+++    ++|++++++.|++++..
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~g~~~------~~~~iRis~~~~~t----~edi~~~l~~L~~~l~~  363 (368)
T PRK13479        295 QSPIIVTFHAPADPAYDFKEFYERLKEQGFVIYPGKLT------QVDTFRIGCIGDVD----AADIRRLVAAIAEALYW  363 (368)
T ss_pred             cCceEEEEECCCCCCcCHHHHHHHHHHCCEEEecCCCC------CCCEEEEecCCCCC----HHHHHHHHHHHHHHHHH
Confidence            111 12222221 2346678999999999999643111      13579999877777    99999999999988764

>TIGR01814 kynureninase kynureninase

Probab=99.96  E-value=2.6e-27  Score=235.69  Aligned_cols=339  Identities=14%  Similarity=0.088  Sum_probs=224.9

Q ss_pred             hcCeeEe-cCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHH
Q 013217           20 FKSLELI-ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA   98 (447)
Q Consensus        20 ~~~i~l~-~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a   98 (447)
                      ++.+.|. .+..++|+.|.+++..++.. |..+..+.++.+...+.. +.+.. +.+ +++|++++++   +.+.++|++
T Consensus        26 ~~~iyld~~a~g~~p~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~-~~~-~l~g~~~~~v---~~~~~~t~~   98 (406)
T TIGR01814        26 NAVIYLDGNSLGLMPKAARNALKEELDK-WAKIAIRGHNTGKAPWFT-LDESL-LKL-RLVGAKEDEV---VVMNTLTIN   98 (406)
T ss_pred             CCcEEecCCCcCcCcHHHHHHHHHHHHH-HHHhhhccCccCCCChhh-hhhhh-ccc-cccCCCCCcE---EEeCCchHH
Confidence            3457776 66667899999999877643 322211122211112222 22222 235 8999988754   223455688


Q ss_pred             HHHHHHHhcCCCC---EEEEecCCCCcccCCCccccccccccccceeE--EEecccCCCCCCCCHHHHHHHhhh--hCCc
Q 013217           99 NFEVYTAILKPHD---RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE--SMPYRLDESTGLVDYDMLEKTAIL--FRPK  171 (447)
Q Consensus        99 ~~~~~~al~~pgd---~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~id~~~l~~~~~~--~~~k  171 (447)
                      +..++.++++||+   .|++.+.+|++....+.    ..+...|..+.  .+.++.+ +++.+|++++++.++.  .+|+
T Consensus        99 l~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~----~~~~~~g~~~~~~~~~~~~~-~~g~~~~~~l~~~~~~~~~~t~  173 (406)
T TIGR01814        99 LHLLLASFYKPTPKRYKILLEAKAFPSDHYAIE----SQLQLHGLTVEESMVQIEPR-EEETLRLEDILDTIEKNGDDIA  173 (406)
T ss_pred             HHHHHHHhcCCcCCccEEEecCCCCChHHHHHH----HHHHhcCCCcccceEEeccC-CCCccCHHHHHHHHHhcCCCeE
Confidence            8888888877653   57777777776432110    01122343221  1233333 3567899999988752  3789


Q ss_pred             EEEEcCCCCC-C-CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCceEEeecCCc
Q 013217          172 LIIAGASAYP-R-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPV  249 (447)
Q Consensus       172 lii~~~~~~~-~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~  249 (447)
                      +|++++.++. + ..|+++|+++|+++|+++++|++|+.|.++.++...   ++|++++|+||||+||+||++++.++  
T Consensus       174 lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~~~---gvD~~~~s~hK~l~g~pG~~l~v~~~--  248 (406)
T TIGR01814       174 VILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDLHDW---GVDFACWCTYKYLNAGPGAGAFVHEK--  248 (406)
T ss_pred             EEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCcccccccC---CCCEEEEcCccccCCCCCeEEEEehh--
Confidence            9988854443 3 789999999999999999999999999886655433   48999999999998766766666553  


Q ss_pred             chhhHHHHhhhcc----------------------CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHH
Q 013217          250 LGVELESAINNAV----------------------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASR  307 (447)
Q Consensus       250 ~~~~~~~~i~~~~----------------------~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~  307 (447)
                         .. ..+....                      .....|||+...++++..|++.+.+.+.+...++..+.++++.+.
T Consensus       249 ---~~-~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~  324 (406)
T TIGR01814       249 ---HA-HTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRKKSLLLTDYLEEL  324 (406)
T ss_pred             ---hh-hhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence               11 1111100                      001147899999999999999987778888888899999999998


Q ss_pred             HHHC-----CcEeeeCCC---CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEec-CccccCC
Q 013217          308 LVEL-----GYKLVSGGS---DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS-PAMTTRG  378 (447)
Q Consensus       308 L~~~-----g~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~-~~~~~~g  378 (447)
                      |.+.     |++++++..   ...++.+.+.   .+++++.+.|.++||.+...         .++.||+|+ +.+||  
T Consensus       325 l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~---~~~~~~~~~L~~~gi~v~~~---------~~~~iRiS~~~~~nt--  390 (406)
T TIGR01814       325 IKARCGGPPVLTIITPRDHAQRGCQLSLTHP---VPGKAVFQALIKRGVIGDKR---------EPSVIRVAPVPLYNT--  390 (406)
T ss_pred             HHhhcCCCCceEEeCCCChhhcCCeEEEEec---CCHHHHHHHHHHCCEEEecc---------CCCeEEEechhccCC--
Confidence            8773     477776421   1223333332   36788999999999987421         135899998 67888  


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 013217          379 FSEKEFVAIADFIHEGV  395 (447)
Q Consensus       379 ~~~~di~~l~~~i~~~l  395 (447)
                        ++|+++++++|++++
T Consensus       391 --~~did~l~~~l~~~~  405 (406)
T TIGR01814       391 --FVDVYDAVNVLEEIL  405 (406)
T ss_pred             --HHHHHHHHHHHHHHh
Confidence              999999999998754

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.96  E-value=6.2e-27  Score=233.92  Aligned_cols=339  Identities=17%  Similarity=0.216  Sum_probs=232.3

Q ss_pred             cCeeEecCCC---CCCH----HHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecC
Q 013217           21 KSLELIASEN---FTSR----AVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPL   93 (447)
Q Consensus        21 ~~i~l~~~~n---~~~~----~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~   93 (447)
                      +.++|..++.   +.++    ++.+++...+...       ...|++.....+++    +.+++++|.+.     .+.++
T Consensus        37 ~~~~L~~g~p~~D~~tds~t~a~~~a~~~a~~~g-------~~~Y~~~~g~~~Lr----eaia~~~~~~~-----vv~t~  100 (460)
T PRK13238         37 NPFLLKSEDVFIDLLTDSGTGAMSDRQWAAMMRG-------DEAYAGSRSYYRLE----DAVKDIFGYPY-----TIPTH  100 (460)
T ss_pred             CEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHhC-------CcccCCCCCHHHHH----HHHHHHhCCCc-----EEECC
Confidence            6778777665   3332    4666666555331       12245555567777    46788888764     24456


Q ss_pred             CcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC---------CCCCCCHHHHHHH
Q 013217           94 SGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE---------STGLVDYDMLEKT  164 (447)
Q Consensus        94 sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---------~~~~id~~~l~~~  164 (447)
                      +|++|+..++.++++||| |+++++.+..+.        ..+...|.  +++.+++++         .++.+|+++|+++
T Consensus       101 ggt~A~~~~~~all~pGD-Vii~~p~~~~~~--------~~i~~~G~--~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~  169 (460)
T PRK13238        101 QGRAAEQILFPVLIKKGD-VVPSNYHFDTTR--------AHIELNGA--TAVDLVIDEALDTGSRHPFKGNFDLEKLEAL  169 (460)
T ss_pred             CHHHHHHHHHHHhCCCCC-EEccCCcccchH--------HHHHHcCC--EEEEEeccccccccccccccCCcCHHHHHHH
Confidence            777999999999999999 887766443321        12345565  444444432         2345999999999


Q ss_pred             hhh---hCCcEEEEcCCCCCC---CC---ChHHHHHHHHHhCCEEEEehhhhcc-cccc-----ccCCCC--------CC
Q 013217          165 AIL---FRPKLIIAGASAYPR---DF---DYPRMRQIADAVGALLMMDMAHISG-LVAA-----SVVADP--------FK  221 (447)
Q Consensus       165 ~~~---~~~klii~~~~~~~~---~~---~~~~i~~ia~~~g~~livD~a~~~g-~~~~-----~~~~~~--------~~  221 (447)
                      +++   .+|++|+++.++|++   ..   ++++|+++|++||+++++|++|..+ +.+.     +.....        ..
T Consensus       170 i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s  249 (460)
T PRK13238        170 IEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFS  249 (460)
T ss_pred             HhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcc
Confidence            985   268999999777763   33   4679999999999999999998653 2221     111111        13


Q ss_pred             cccEEEeCCCcccCCCCCceEEeecCCcchhhHHHHhhhccC--CC--CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHH
Q 013217          222 YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVF--PG--LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKV  297 (447)
Q Consensus       222 ~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~--~~--~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~  297 (447)
                      .+|++++|++|.+.+|.||+++++++     ++.++++....  .+  .+|+++...++|++.++++...+.   +....
T Consensus       250 ~~D~~~~Sg~K~g~~~~GG~i~~~d~-----~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~~---~~~~~  321 (460)
T PRK13238        250 YADGLTMSAKKDAMVNIGGLLCFRDE-----DLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMDED---YLAYR  321 (460)
T ss_pred             cCcEEEEecccCCCCcceeEEEcChH-----HHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhhChH---HHHHH
Confidence            58999999999999999999999864     78887776542  22  356666666788888888765543   34455


Q ss_pred             HHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCC-------CCCHH-HHHHHHhhcCeEEccCC---CCCCCCC-----
Q 013217          298 VSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPM-------GIDGA-RVEKILDMASITLNKNS---VPGDKSA-----  361 (447)
Q Consensus       298 ~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~-------~~~~~-~~~~~L~~~gI~v~~~~---~p~~~~~-----  361 (447)
                      .+++++|.+.|.+.|++++.+ ...|++++|+...       +..+. .+..++++.||.+....   .+.+...     
T Consensus       322 ~~~~~~l~~~L~~~G~~~~~p-~Gg~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~  400 (460)
T PRK13238        322 IGQVEYLGEGLEEAGVPIQTP-AGGHAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLP  400 (460)
T ss_pred             HHHHHHHHHHHHHCCCCeEcc-CCceEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecccceecccCCCCccccC
Confidence            667899999999999998864 4578888988642       12233 45566688999985432   2222211     


Q ss_pred             CCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          362 LVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       362 ~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      .....+|++++   .|+.+.+.++++++.|.++.+..
T Consensus       401 ~~~~~~Rla~~---rr~~~~~~~~~~~~~l~~~~~~~  434 (460)
T PRK13238        401 APAELLRLAIP---RRVYTQSHMDYVAEALKAVKENR  434 (460)
T ss_pred             CccceEEEecc---cccCCHHHHHHHHHHHHHHHHhH
Confidence            11468999976   68889999999999999987654

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.96  E-value=9.2e-27  Score=231.25  Aligned_cols=332  Identities=19%  Similarity=0.224  Sum_probs=227.8

Q ss_pred             CeeEecCCCC----CCHHHHHHHhhhhhccCCCCCCCCcccCc-hhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH
Q 013217           22 SLELIASENF----TSRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS   96 (447)
Q Consensus        22 ~i~l~~~~n~----~~~~v~~a~~~~~~~~~~~g~~~~~~~~g-~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs   96 (447)
                      .|++. +.+|    .+|.+++++...+.. |..||++.++..| .+...++|    +.+++++|.+.     .+.++||+
T Consensus        40 ~i~~~-~~~~lg~~~~~~v~~~~~~~~~~-~~~~~~~s~~~~G~~~~~~~le----~~ia~~~g~~~-----~ii~~~~~  108 (393)
T TIGR01822        40 VLNFC-ANNYLGLSSHPDLIQAAKDALDE-HGFGMSSVRFICGTQDIHKELE----AKIAAFLGTED-----TILYASCF  108 (393)
T ss_pred             EEEee-CCCccccCCCHHHHHHHHHHHHH-hCCCCCCcCcccCChHHHHHHH----HHHHHHhCCCc-----EEEECchH
Confidence            35554 3344    378899998887754 4458888887766 34445555    68889999864     23347888


Q ss_pred             HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh-----CCc
Q 013217           97 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPK  171 (447)
Q Consensus        97 ~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~-----~~k  171 (447)
                      +|+..++.++++|||+|++.++.|.++..        .+...+.  ..+.+      ..+|++++++++++.     +|+
T Consensus       109 ~a~~~~~~~l~~~gd~vi~~~~~~~s~~~--------~~~~~~~--~~~~~------~~~d~~~l~~~i~~~~~~~~~~~  172 (393)
T TIGR01822       109 DANGGLFETLLGAEDAIISDALNHASIID--------GVRLCKA--KRYRY------ANNDMADLEAQLKEARAAGARHR  172 (393)
T ss_pred             HHHHHHHHHhCCCCCEEEEeccccHHHHH--------HHHhcCC--ceEEe------CCCCHHHHHHHHHhhhhcCCCce
Confidence            99999999999999999999998877542        1222332  12221      248999999988752     677


Q ss_pred             EEEEcCCCCC-C-CCChHHHHHHHHHhCCEEEEehhhhccccccccC----CCCC-CcccEEEeCCCcccCCCCCceEEe
Q 013217          172 LIIAGASAYP-R-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV----ADPF-KYCDVVTTTTHKSLRGPRGGMIFF  244 (447)
Q Consensus       172 lii~~~~~~~-~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~----~~~~-~~~Di~~~s~~K~l~Gp~gG~i~~  244 (447)
                      +|++++.+++ + ..|+++|.++|++||+++++|++|..|.......    ...+ +.+|++++|+||+++|+++|++++
T Consensus       173 ~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g~r~G~~~~  252 (393)
T TIGR01822       173 LIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKALGGASGGFTTA  252 (393)
T ss_pred             EEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHhhCCCcEEEEe
Confidence            8877754444 3 6799999999999999999999997776532110    0111 247899999999999999999998


Q ss_pred             ecCCcchhhHHHHhhhccCCC-CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCe
Q 013217          245 KKDPVLGVELESAINNAVFPG-LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNH  323 (447)
Q Consensus       245 ~~~~~~~~~~~~~i~~~~~~~-~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~  323 (447)
                      ++      ++.+.+.....+. ..++++...+++...+++.+.  +.++..+++.++++++.+.|.+.|+.+..+  ...
T Consensus       253 ~~------~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~~~  322 (393)
T TIGR01822       253 RK------EVVELLRQRSRPYLFSNSLPPAVVGASIKVLEMLE--ASNELRDRLWANTRYFRERMEAAGFDIKPA--DHP  322 (393)
T ss_pred             CH------HHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHcCCCCCCC--CCC
Confidence            87      6777665532222 234445555555556676543  245667888999999999998888876532  222


Q ss_pred             eEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          324 LVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       324 ~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      ++.+.+.. ..+..++.+.|.++||.+.....|.  .+....++|++++..++    ++|++++++.|.++++.
T Consensus       323 ~~~i~~~~-~~~~~~l~~~L~~~gI~v~~~~~~~--~~~~~~~iRis~~~~~t----~edi~~~~~~l~~~~~~  389 (393)
T TIGR01822       323 IIPVMLYD-AVLAQRFARRLLEEGIYVTGFFYPV--VPKGQARIRVQISAAHT----EEQLDRAVEAFTRIGRE  389 (393)
T ss_pred             EEEEEeCC-HHHHHHHHHHHHHCCeeEeeeCCCC--CCCCCceEEEEECCCCC----HHHHHHHHHHHHHHHHH
Confidence            33333221 1245678888888899986322221  11123479999998888    99999999999887653

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=99.96  E-value=1.5e-27  Score=225.55  Aligned_cols=347  Identities=19%  Similarity=0.178  Sum_probs=223.7

Q ss_pred             cCeeEe-cCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-HH
Q 013217           21 KSLELI-ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PA   98 (447)
Q Consensus        21 ~~i~l~-~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a   98 (447)
                      +.+.|. .+..+++++|+++|..++.+.  .|+|..++ .+.+..+.+| .+|+.+++++|+++.+++    +|+|+ ++
T Consensus        43 ~~vyld~~at~p~~~~Vldam~~~~~~~--~~nPh~~~-y~w~~~~~~E-~aR~~VAklInAd~~dIi----Fts~ATEs  114 (428)
T KOG1549|consen   43 RPVYLDNQATGPMDPRVLDAMLPYLLEY--LGNPHSRS-YGWKAEDAVE-AAREQVAKLINADPSDIV----FTSGATES  114 (428)
T ss_pred             ccEEEecCcCCCCCHHHHHHHHHHHHHh--hcCCCccc-cchhhhHHHH-HHHHHHHHHhCCCCCcEE----EeCCchHH
Confidence            345443 556688999999999999874  48888873 3455556677 689999999999987542    36665 89


Q ss_pred             HHHHHHHh-cCCCC----EEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEE
Q 013217           99 NFEVYTAI-LKPHD----RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI  173 (447)
Q Consensus        99 ~~~~~~al-~~pgd----~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~kli  173 (447)
                      |..++.++ +.++|    +|+++..+|+++...+-     .  +...++++..++++ +++.+|.+.+++.+++ +|++|
T Consensus       115 ~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~-----~--l~~~g~~Vt~lpv~-~~~~~d~~~~~~~i~~-~T~lv  185 (428)
T KOG1549|consen  115 NNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSCR-----A--LQEEGLEVTYLPVE-DSGLVDISKLREAIRS-KTRLV  185 (428)
T ss_pred             HHHHHHHhhccccccccceEEEecccCcchhHHHH-----H--HHhcCeEEEEeccC-ccccccHHHHHHhcCC-CceEE
Confidence            98898887 66788    99999999988753221     1  12223566777777 7789999999999998 99999


Q ss_pred             EEcC-CCCCC-CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcc
Q 013217          174 IAGA-SAYPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVL  250 (447)
Q Consensus       174 i~~~-~~~~~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~  250 (447)
                      .+.. ++-++ .+|+++|+++|++.|+.+++|+||+.|.+..++....   +|++++|+|||+ ||+| |++++++... 
T Consensus       186 ~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i~vDV~eln---~D~~s~s~HK~y-gp~~iGaLYvr~~~~-  260 (428)
T KOG1549|consen  186 SIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVGKIPVDVQELN---ADFLSISAHKIY-GPPGIGALYVRRKRP-  260 (428)
T ss_pred             EEEecccCccccccHHHHHHHhCcCCcEEEeehhhhcCCccccHHHcC---chheeeeccccc-CCCcceEEEEccCCC-
Confidence            8873 34455 8899999999999999999999999999877765554   899999999986 6776 9999996210 


Q ss_pred             hhhHHHHhhhccCCC------CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH--CCcEeeeCCCCC
Q 013217          251 GVELESAINNAVFPG------LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE--LGYKLVSGGSDN  322 (447)
Q Consensus       251 ~~~~~~~i~~~~~~~------~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~~~  322 (447)
                        .+  ++......|      ..|+.......++..|.+..... ..-....+.+....+...+..  ..+.+.+.+...
T Consensus       261 --~~--~~~p~~~GGgq~r~~rsGT~~~~~~~~~gsA~e~~~~~-~~~~~~~~~~~~~~ll~~i~~~~~~~~~~G~~~~~  335 (428)
T KOG1549|consen  261 --RL--RVEPPLSGGGQERGLRSGTVATPLAVGLGSAAEFVNKE-MAYDEAIIKRLSEKLLMGIGQSLPEVTLNGSGKSR  335 (428)
T ss_pred             --cc--cccCcccCCccccccccCCcCchhhhhhHHHHHHHHhh-cchhHHHHHHHHHHHHHHHhhhCchhhccCCcccc
Confidence              11  111111112      24677777777777777665421 111122223344444444433  222222222211


Q ss_pred             eeEEecCCCCCCCHHHHHHHHh----hcCeEEccCC-CCC-------CCCCCCCCeEEEecCccccCCCCHHHHHHHHHH
Q 013217          323 HLVLVDLRPMGIDGARVEKILD----MASITLNKNS-VPG-------DKSALVPGGIRIGSPAMTTRGFSEKEFVAIADF  390 (447)
Q Consensus       323 ~~~~v~~~~~~~~~~~~~~~L~----~~gI~v~~~~-~p~-------~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~  390 (447)
                      ....+.+......+.-+...++    ..|..+.... -|.       .......++||||...+|+    ++|++++++.
T Consensus       336 ~~~~~~~~~~~~~g~~~~~~~~~~~l~s~~a~~~~~~epsy~l~~~G~~~~~~~~~iRis~G~y~t----~~di~~~~~~  411 (428)
T KOG1549|consen  336 YPGLVSLSFPYVEGESLLMDLKDVALSSGSACTSASLEPSYVLRAIGVDEDLAHSSIRISIGRYTT----EEDIDYLVDA  411 (428)
T ss_pred             cccceeeecccccCcchhhhhhhhhhcccchhhcCCCCcchhhhhcCcchhhhcceeEEeeeeeCc----HHHHHHHHHH
Confidence            1112222111111111111111    1222221111 111       1112346789999999999    9999999999


Q ss_pred             HHHHHHHH
Q 013217          391 IHEGVEIT  398 (447)
Q Consensus       391 i~~~l~~~  398 (447)
                      |++.++..
T Consensus       412 i~~~v~~~  419 (428)
T KOG1549|consen  412 IKKLVSLL  419 (428)
T ss_pred             HHHHHHhc
Confidence            99888754

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.96  E-value=3e-26  Score=224.39  Aligned_cols=329  Identities=16%  Similarity=0.142  Sum_probs=225.0

Q ss_pred             eEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHH
Q 013217           24 ELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY  103 (447)
Q Consensus        24 ~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~  103 (447)
                      .|.|+...+++.|++++...... +           ...+.+ +.+..++.+++++|+++... ..+.+.+|++++..++
T Consensus         2 ~~~p~p~~~~~~~~~~~~~~~~~-~-----------~~~~~~-~~~~~~~~la~~~~~~~~~~-~i~~~~~gt~~l~~~~   67 (355)
T TIGR03301         2 LLTPGPLSTSATVRDAMLVDWCH-W-----------DSEFND-VTDQVRDRLLALAGGDDNHT-CVLLQGSGTFAVEATI   67 (355)
T ss_pred             cCcCCCCCCCHHHHHHhhhhccC-C-----------CHHHHH-HHHHHHHHHHHHhcCCCCCc-EEEEeCCcHHHHHHHH
Confidence            35788888999999999763221 1           112223 33356789999999986432 1233578889999999


Q ss_pred             HHhcCCCCEEEEecCCCCcc-cCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh-CCcEEEEcCCCCC
Q 013217          104 TAILKPHDRIMGLDLPHGGH-LSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-RPKLIIAGASAYP  181 (447)
Q Consensus       104 ~al~~pgd~Vl~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~-~~klii~~~~~~~  181 (447)
                      .+++++||++++.++.+.+. +.       ..+...|.  +++.++.+ +++.+|++++++.++++ ++++|++..++++
T Consensus        68 ~~~~~~~~~vi~~~~~~~~~~~~-------~~a~~~g~--~~~~i~~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~  137 (355)
T TIGR03301        68 GSLVPRDGKLLVLINGAYGERLA-------KICEYLGI--PHTDLNFS-EYEPPDLNRIEEALAADPDITHVATVHHETT  137 (355)
T ss_pred             HhccCCCCeEEEECCCchhhHHH-------HHHHHcCC--ceEEEecC-CCCCCCHHHHHHHHHhCCCceEEEEEecCCc
Confidence            99999999877765443221 10       01223344  44444454 35679999999998762 3455665544444


Q ss_pred             --CCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHh
Q 013217          182 --RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAI  258 (447)
Q Consensus       182 --~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i  258 (447)
                        ...|+++|.++|+++|+++++|++|+.|....+....   ++|++++|+|||++|+.| |++++++      +..+.+
T Consensus       138 ~G~~~~~~~i~~l~~~~~~~livD~~~s~g~~~~~~~~~---~~d~~~~s~~K~l~~~~G~g~~~~~~------~~~~~~  208 (355)
T TIGR03301       138 TGILNPLEAIAKVARSHGAVLIVDAMSSFGAIPIDIEEL---DVDALIASANKCLEGVPGFGFVIARR------DLLEAS  208 (355)
T ss_pred             ccchhHHHHHHHHHHHcCCEEEEEeccccCCcccchhhc---CccEEEecCCcccccCCceeEEEECH------HHHHHh
Confidence              3779999999999999999999998777543221111   489999999999988888 9999988      555544


Q ss_pred             hhccC----------------CCCCCCCcHHHHHHHHHHHHHhcChh-HHHHHHHHHHHHHHHHHHHHHCCcEeeeCC-C
Q 013217          259 NNAVF----------------PGLQGGPHNHTIGGLAVCLKHAQSPE-FKVYQNKVVSNCRALASRLVELGYKLVSGG-S  320 (447)
Q Consensus       259 ~~~~~----------------~~~~g~p~~~~~aal~~al~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~  320 (447)
                      .....                .....+++...+.++..+++.+...+ +++..+++.++++++.+.|.+.|++++.+. .
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~  288 (355)
T TIGR03301       209 AGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRALGFQPLLPERW  288 (355)
T ss_pred             hCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCC
Confidence            31100                01234667777788888888776555 778888999999999999998898865432 1


Q ss_pred             CCe-eEEecCCC-CCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          321 DNH-LVLVDLRP-MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       321 ~~~-~~~v~~~~-~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      .+. ++++.+.. ...+..++.+.|.++||.+..+.    ..  ..++||++++.+++    ++|++++++.|++++
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~----~~--~~~~iRis~~~~~~----~~~i~~~~~~l~~~~  355 (355)
T TIGR03301       289 QSPIIVSFLYPDDPDFDFDDFYQELKERGFVIYPGK----LT--LADTFRIGTIGEID----AADIERLLEAIKDAL  355 (355)
T ss_pred             CCCcEEEEECCCCCcchHHHHHHHHHHCCEEEECCc----cc--cccEEEEecCCCCC----HHHHHHHHHHHHhhC
Confidence            233 33455432 12455788999999999996532    11  12589999887777    999999999998653

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.96  E-value=2.7e-26  Score=226.73  Aligned_cols=333  Identities=13%  Similarity=0.085  Sum_probs=216.2

Q ss_pred             CeeEe--cCCCCCCHHHHHHHhhhhhccCCCCCCCC-cccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHH
Q 013217           22 SLELI--ASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA   98 (447)
Q Consensus        22 ~i~l~--~~~n~~~~~v~~a~~~~~~~~~~~g~~~~-~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a   98 (447)
                      .|+|.  .--.++++++++++..+... |  +.|.. .+..+......+ +.+++.+++++|+++    +.+ +++|+++
T Consensus        20 ~~~~~~~~~~~p~~~~~~~a~~~~~~~-~--~~~~~~~~~~~~~~~~~~-~~l~~~lA~~~g~~~----~~~-~~g~t~a   90 (387)
T PRK09331         20 FINLDPIQRGGILTPEARKALIEYGDG-Y--SVCDYCPGRLDQIKKPPI-ADFHEDLAEFLGMDE----ARV-THGAREG   90 (387)
T ss_pred             ccccChhhcCCCCCHHHHHHHHHHHhc-c--CCCcccccccccccChHH-HHHHHHHHHHhCCCc----EEE-eCCHHHH
Confidence            35553  34457899999999988742 2  33322 111111111122 234578999999975    222 3566699


Q ss_pred             HHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC-CCCCCCCHHHHHHHhhhh------CCc
Q 013217           99 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-ESTGLVDYDMLEKTAILF------RPK  171 (447)
Q Consensus        99 ~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~id~~~l~~~~~~~------~~k  171 (447)
                      +.+++.+++++||+|++..+.|.+.+.        .+...|.  +++.++.+ .+++.+|++++++.+++.      +++
T Consensus        91 ~~~al~~l~~~gd~Vlv~~~~h~s~~~--------~~~~~G~--~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~  160 (387)
T PRK09331         91 KFAVMHSLCKKGDYVVLDGLAHYTSYV--------AAERAGL--NVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPA  160 (387)
T ss_pred             HHHHHHHhcCCCCEEEECCCchHHHHH--------HHHHcCC--EEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCE
Confidence            999999999999999998877665431        2334554  44454452 145789999999998753      689


Q ss_pred             EEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCC
Q 013217          172 LIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDP  248 (447)
Q Consensus       172 lii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~  248 (447)
                      +|+++++++++  ..|+++|.++|+++|+++++|++|+.|.++.+....   ++|++++|+|||+++|.+ |++++++  
T Consensus       161 lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~~~~~~~~---g~D~~~~s~~K~l~~~~~~G~l~~~~--  235 (387)
T PRK09331        161 LALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRMPVDGKKL---GADFIVGSGHKSMAASAPSGVLATTE--  235 (387)
T ss_pred             EEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCcccCCcCCCHHHc---CCCEEEeeCcccccCCCCEEEEEECH--
Confidence            99988666543  789999999999999999999999887654332221   489999999999987765 9999987  


Q ss_pred             cchhhHHHHhhhccCCC-------CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCC-
Q 013217          249 VLGVELESAINNAVFPG-------LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGG-  319 (447)
Q Consensus       249 ~~~~~~~~~i~~~~~~~-------~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-  319 (447)
                          ++.+.+.....+.       ..++......+++.++++.+..  ..+..++..++++++++.|.+. |++++... 
T Consensus       236 ----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~~~~--~~~~~~~~~~~~~~l~~~L~~l~g~~~~~~~~  309 (387)
T PRK09331        236 ----EYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPHVVE--RVKRWDEEVKKARWFVDELEKIEGFKQLGEKP  309 (387)
T ss_pred             ----HHHhhcccccCCCcccceeeeceecCchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCCEEEeccCc
Confidence                5665553321110       1122222233334445554432  2234566778899999999997 99988421 


Q ss_pred             CCCeeEEecCC-------CCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHH
Q 013217          320 SDNHLVLVDLR-------PMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH  392 (447)
Q Consensus       320 ~~~~~~~v~~~-------~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~  392 (447)
                      ..+.+..++..       ....++.++.+.|.++||..-.   ++     ....+|+++..     .+++|+++++++|+
T Consensus       310 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~---~~-----~~~i~ri~~~g-----~t~~di~~l~~aL~  376 (387)
T PRK09331        310 RNHDLMKFETPSFDEIAKKHKRRGFFLYEELKKRGIHGIK---PG-----ATKEFKLSTYG-----LTWEQVEYVADAFK  376 (387)
T ss_pred             CcCCeEEEeCCchhHHhhhccccchhHHHHHHHcCceEEc---cC-----CceEEEEEecc-----CCHHHHHHHHHHHH
Confidence            22333334432       1122446788999999997421   11     12346776533     34999999999999


Q ss_pred             HHHHH
Q 013217          393 EGVEI  397 (447)
Q Consensus       393 ~~l~~  397 (447)
                      ++++.
T Consensus       377 ~i~~~  381 (387)
T PRK09331        377 EIAEK  381 (387)
T ss_pred             HHHHh
Confidence            88664

>PRK07179 hypothetical protein; Provisional

Probab=99.96  E-value=4.5e-26  Score=226.99  Aligned_cols=328  Identities=18%  Similarity=0.249  Sum_probs=229.1

Q ss_pred             ecCCCCC----CHHHHHHHhhhhhccCCCCCC-CCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHH
Q 013217           26 IASENFT----SRAVMEAVGSCLTNKYSEGLP-GKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  100 (447)
Q Consensus        26 ~~~~n~~----~~~v~~a~~~~~~~~~~~g~~-~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~  100 (447)
                      ..|.+|+    .|.+++++.+.+.. |..+.. ++.+..+.+...++|    +++++++|.+.    + +.++||++||.
T Consensus        59 ~~~~~YL~l~~~p~v~~a~~~~~~~-~~~~~~~s~~~~~~~~~~~~le----~~la~~~g~~~----~-~~~~sG~~An~  128 (407)
T PRK07179         59 LQSNDYLNLSGHPDIIKAQIAALQE-EGDSLVMSAVFLHDDSPKPQFE----KKLAAFTGFES----C-LLCQSGWAANV  128 (407)
T ss_pred             eecCCccCCCCCHHHHHHHHHHHHH-hCCCCCccccccCCchHHHHHH----HHHHHHhCCCc----E-EEECCHHHHHH
Confidence            4566676    58999999888764 322211 234555555666776    57899999875    2 44688999999


Q ss_pred             HHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCC
Q 013217          101 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY  180 (447)
Q Consensus       101 ~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~  180 (447)
                      .++.++..+||.|++..+.|.+...        .+...|.  ++++++      ..|++++++++++.++++|++.++++
T Consensus       129 ~~l~~l~~~g~~v~~~~~~h~s~~~--------~~~~~g~--~~~~~~------~~d~~~l~~~l~~~~~~lV~v~~v~n  192 (407)
T PRK07179        129 GLLQTIADPNTPVYIDFFAHMSLWE--------GVRAAGA--QAHPFR------HNDVDHLRRQIERHGPGIIVVDSVYS  192 (407)
T ss_pred             HHHHHhCCCCCEEEEECCcCHHHHH--------HHHHCCC--eEEEec------CCCHHHHHHHHHhcCCeEEEECCCCC
Confidence            9999999999999988776655421        1223332  334432      36999999999764578888876665


Q ss_pred             CC--CCChHHHHHHHHHhCCEEEEehhhhccccccc---cC-CCCC-CcccEEEeCCCcccCCCCCceEEeecCCcchhh
Q 013217          181 PR--DFDYPRMRQIADAVGALLMMDMAHISGLVAAS---VV-ADPF-KYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVE  253 (447)
Q Consensus       181 ~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~---~~-~~~~-~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~  253 (447)
                      ++  ..|+++|.++|+++|+++++|++|+.|.....   .. ..++ +.+|++++|+||+++ +++|++++++      +
T Consensus       193 ~tG~i~pl~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g-~~~G~l~~~~------~  265 (407)
T PRK07179        193 TTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFA-GRAGIITCPR------E  265 (407)
T ss_pred             CCCccccHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhh-ccCeEEEeCH------H
Confidence            54  78999999999999999999999986643211   11 1111 146999999999985 5789999887      6


Q ss_pred             HHHHhhhccCCCC-CCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCC
Q 013217          254 LESAINNAVFPGL-QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPM  332 (447)
Q Consensus       254 ~~~~i~~~~~~~~-~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~  332 (447)
                      +.+.+.....+.. .+++....++++.++++.+..  ..+..+++.++++++.+.|.+.|+++.+   ..+++++.+.. 
T Consensus       266 ~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~~~~--~~~~~~~l~~~~~~l~~~L~~~g~~v~~---~~~i~~l~~~~-  339 (407)
T PRK07179        266 LAEYVPFVSYPAIFSSTLLPHEIAGLEATLEVIES--ADDRRARLHANARFLREGLSELGYNIRS---ESQIIALETGS-  339 (407)
T ss_pred             HHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHcCCCCCC---CCCEEEEEeCC-
Confidence            6666654333332 455566777777777776543  2456788999999999999988887663   23455555432 


Q ss_pred             CCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          333 GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       333 ~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      ..+...+.+.|.++||.++..+.|..  +...+.+||+++..+|    ++|+++++++|.+++...
T Consensus       340 ~~~~~~~~~~L~~~GI~~~~~~~p~~--~~~~~~lRis~~~~~t----~edi~~~~~~l~~~~~~~  399 (407)
T PRK07179        340 ERNTEVLRDALEERNVFGAVFCAPAT--PKNRNLIRLSLNADLT----ASDLDRVLEVCREARDEV  399 (407)
T ss_pred             HHHHHHHHHHHHHCCceEeeecCCCC--CCCCceEEEEECCCCC----HHHHHHHHHHHHHHHHhh
Confidence            12346678889999998653323322  2234689999998887    999999999999887753

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.96  E-value=1.1e-26  Score=227.31  Aligned_cols=300  Identities=18%  Similarity=0.226  Sum_probs=214.1

Q ss_pred             ecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccC-chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCc-HHHHHHHH
Q 013217           26 IASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG-GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPANFEVY  103 (447)
Q Consensus        26 ~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~-g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sG-s~a~~~~~  103 (447)
                      .++..++|+.|++++..++.+.+  ++|+.+.+. +....+.+ +.+++++++++|+++++    |..++| ++++..++
T Consensus         4 ~a~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~r~~la~~~g~~~~~----v~~~~g~t~a~~~~l   76 (353)
T TIGR03235         4 HNATTPIDPAVAEAMLPWLLEEF--GNPSSRTHEFGHNAKKAV-ERARKQVAEALGADTEE----VIFTSGATESNNLAI   76 (353)
T ss_pred             CCCCCCCCHHHHHHHHHHHHhcC--CCCCchhhHHHHHHHHHH-HHHHHHHHHHhCCCCCe----EEEeCCHHHHHHHHH
Confidence            35667889999999998886543  556653221 22233334 45778999999998764    334566 48888888


Q ss_pred             HHhc----CCC-CEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCC
Q 013217          104 TAIL----KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS  178 (447)
Q Consensus       104 ~al~----~pg-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~  178 (447)
                      .++.    ++| |+|++...+|+++.....     .+...|.  +++.++++ +++.+|++++++.+++ ++++|+++++
T Consensus        77 ~~l~~~~~~~g~~~vi~~~~~~~s~~~~~~-----~~~~~G~--~v~~v~~~-~~~~~d~~~l~~~l~~-~~~lv~~~~~  147 (353)
T TIGR03235        77 LGLARAGEQKGKKHIITSAIEHPAVLEPIR-----ALERNGF--TVTYLPVD-ESGRIDVDELADAIRP-DTLLVSIMHV  147 (353)
T ss_pred             HHHHHhcccCCCCeeeEcccccHHHHHHHH-----HHHhcCC--EEEEEccC-CCCcCCHHHHHHhCCC-CCEEEEEEcc
Confidence            8775    366 789888888876543221     1122343  55555565 4578999999999976 8999988866


Q ss_pred             CCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHH
Q 013217          179 AYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELE  255 (447)
Q Consensus       179 ~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~  255 (447)
                      ++++  ..|+++|.++|+++|+++++|++|+.|.+..++...   ++|++++|+||| .||.| |+++++++      ..
T Consensus       148 ~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~~~~~~~---~~D~~~~s~~K~-~gp~g~g~l~~~~~------~~  217 (353)
T TIGR03235       148 NNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKITVDLSAD---RIDLISCSGHKI-YGPKGIGALVIRKR------GK  217 (353)
T ss_pred             cCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCcccccccc---CCCEEEeehhhc-CCCCceEEEEEccC------cc
Confidence            6654  789999999999999999999999998876554332   489999999998 58988 99999874      21


Q ss_pred             H--HhhhccC------CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEe
Q 013217          256 S--AINNAVF------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLV  327 (447)
Q Consensus       256 ~--~i~~~~~------~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v  327 (447)
                      .  .+....+      ....|+++...++++..+++.+. .+.++..+++.++++.+.+.|.+.|++++.+.......++
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~  296 (353)
T TIGR03235       218 PKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIAR-RNAQAWEVKLRAMRNQLRDALQTLGVKLNGDPAETIPHIL  296 (353)
T ss_pred             cccccCceeeCCCCcCccccCCCChHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhccCCeEEeCCcccccCCEE
Confidence            1  1221111      11257888999999999999865 4677888999999999999998899988754222222234


Q ss_pred             cCCCCCCCHHHHHHHHhhcCeEEccC
Q 013217          328 DLRPMGIDGARVEKILDMASITLNKN  353 (447)
Q Consensus       328 ~~~~~~~~~~~~~~~L~~~gI~v~~~  353 (447)
                      .+...+.+++++.+.|.+ +|.++.+
T Consensus       297 ~~~~~~~~~~~v~~~L~~-~i~v~~g  321 (353)
T TIGR03235       297 NFSIDGVNSEALIVNLRA-DAAVSTG  321 (353)
T ss_pred             EEEeCCcCHHHHHHHHhC-CeEEEch
Confidence            444446778899999975 8988764

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PRK14012 cysteine desulfurase; Provisional

Probab=99.95  E-value=2.7e-26  Score=228.39  Aligned_cols=341  Identities=16%  Similarity=0.177  Sum_probs=224.6

Q ss_pred             ecCCCCCCHHHHHHHhhhhh--ccCCCCCCCCccc-CchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHH
Q 013217           26 IASENFTSRAVMEAVGSCLT--NKYSEGLPGKRYY-GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV  102 (447)
Q Consensus        26 ~~~~n~~~~~v~~a~~~~~~--~~~~~g~~~~~~~-~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~  102 (447)
                      .++..++|+.|++++..++.  +.+  +.++.+.. .+....+.++ .+++++++++|++++++   +.+++|++++..+
T Consensus         9 ~a~~~~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~r~~ia~~~g~~~~~v---~~~~g~t~al~~~   82 (404)
T PRK14012          9 YSATTPVDPRVAEKMMPYLTMDGTF--GNPASRSHRFGWQAEEAVD-IARNQIADLIGADPREI---VFTSGATESDNLA   82 (404)
T ss_pred             CcCCCCCCHHHHHHHHHHHHhcccC--cCCCchhhHHHHHHHHHHH-HHHHHHHHHcCcCcCeE---EEeCCHHHHHHHH
Confidence            46667889999999988876  443  33433111 1111112233 45678999999987643   2335566888877


Q ss_pred             HHHh----cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCC
Q 013217          103 YTAI----LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS  178 (447)
Q Consensus       103 ~~al----~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~  178 (447)
                      +.++    .++||+|++.+++|++....+.     .+...|.  +++.++.+ +++.+|+++|++++++ ++++|+++..
T Consensus        83 l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~-----~~~~~g~--~~~~v~~~-~~g~~d~~~l~~~i~~-~t~lv~~~~~  153 (404)
T PRK14012         83 IKGAAHFYQKKGKHIITSKTEHKAVLDTCR-----QLEREGF--EVTYLDPQ-SNGIIDLEKLEAAMRD-DTILVSIMHV  153 (404)
T ss_pred             HHHHHHhhcCCCCEEEEecCccHHHHHHHH-----HHHhCCC--EEEEEccC-CCCcCCHHHHHHhcCC-CCEEEEEECc
Confidence            7766    4799999999988876543221     1112343  45555565 4678999999999987 8999988865


Q ss_pred             CCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHH
Q 013217          179 AYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELE  255 (447)
Q Consensus       179 ~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~  255 (447)
                      ++++  ..|+++|.++|+++|+++++|++|+.|..+.+....   ++|++++|+||. .||.| |+++++++      ..
T Consensus       154 ~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~~~~~~~~---~~D~~~~s~~K~-~gp~g~G~l~~~~~------~~  223 (404)
T PRK14012        154 NNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVPIDLSKL---KVDLMSFSAHKI-YGPKGIGALYVRRK------PR  223 (404)
T ss_pred             CCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCcccCcccC---CCCEEEEehhhc-cCCCceEEEEEecC------CC
Confidence            5543  779999999999999999999999888764433222   489999999995 57877 88888874      11


Q ss_pred             HHhhhccCC------CCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEeeeCCC--CCeeEE
Q 013217          256 SAINNAVFP------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGS--DNHLVL  326 (447)
Q Consensus       256 ~~i~~~~~~------~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~--~~~~~~  326 (447)
                      .++.+....      ...|+++...+.++..|++.+. .+.++..++..+.++++.+.|++ .++.+.....  ..+..+
T Consensus       224 ~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~~~~~  302 (404)
T PRK14012        224 VRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIAK-EEMATENERIRALRDRLWNGIKDIEEVYLNGDLEQRVPGNLN  302 (404)
T ss_pred             CCCCceecCCCccCCccCCCcCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCEEE
Confidence            122211110      1246778888888888887765 35666778888888888888877 4566543211  122222


Q ss_pred             ecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC------------CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          327 VDLRPMGIDGARVEKILDMASITLNKNSVPGDK------------SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       327 v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~------------~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                      +.+..  .+..++...|++.+|.....+.|...            .....+.||++++.++|    ++|++++++.|+++
T Consensus       303 ~~~~~--~~~~~~~~~l~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t----~~dvd~~~~~l~~~  376 (404)
T PRK14012        303 VSFNY--VEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTT----EEEIDYAIELVRKS  376 (404)
T ss_pred             EEEeC--cCHHHHHHhCCCeEEEchhhhCCCCCCCCHHHHHcCCChhhcCceEEEEecCCCC----HHHHHHHHHHHHHH
Confidence            32221  13456666675444433322333221            01124679999999888    99999999999998


Q ss_pred             HHHH
Q 013217          395 VEIT  398 (447)
Q Consensus       395 l~~~  398 (447)
                      ++..
T Consensus       377 ~~~~  380 (404)
T PRK14012        377 IGKL  380 (404)
T ss_pred             HHHH
Confidence            8765

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.95  E-value=3.2e-26  Score=218.09  Aligned_cols=326  Identities=18%  Similarity=0.175  Sum_probs=230.0

Q ss_pred             CCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh-cC
Q 013217           30 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LK  108 (447)
Q Consensus        30 n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al-~~  108 (447)
                      ..+....++++...+.+.|.         ...+.+.++|    +.+++++|+++     .+.++|||.|+..++.++ ++
T Consensus        11 p~i~~~e~~~v~~vl~sg~i---------~~G~~v~~FE----~~~ae~~G~k~-----ava~~sgT~AL~laL~al~ig   72 (374)
T COG0399          11 PSIGEEELAAVQEVLKSGWL---------TGGPFVRRFE----QAFAEYLGVKY-----AVAVSSGTAALHLALLALAIG   72 (374)
T ss_pred             CCcchHHHHHHHHHHHcCCe---------ecChHHHHHH----HHHHHHhCCCe-----EEEecChHHHHHHHHHhcCCC
Confidence            34567788888888887652         2245678888    58999999997     355699999999999977 79


Q ss_pred             CCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCCCCChHH
Q 013217          109 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPR  188 (447)
Q Consensus       109 pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~~~~~~~  188 (447)
                      |||+|++++.++.+..        +.+...|.  +++.+++|++++.+|++.||+++++ +||+|+.. +-++...|+++
T Consensus        73 ~GDeVI~ps~TfvATa--------n~i~~~Ga--~PVFvDid~~T~nid~~~ie~aIt~-~tKAIipV-hl~G~~~dm~~  140 (374)
T COG0399          73 PGDEVIVPSFTFVATA--------NAVLLVGA--KPVFVDIDPDTLNIDPDLIEAAITP-RTKAIIPV-HLAGQPCDMDA  140 (374)
T ss_pred             CCCEEEecCCchHHHH--------HHHHHcCC--eEEEEecCCcccCCCHHHHHHHccc-CCeEEEEe-hhccCCCCHHH
Confidence            9999999998765543        24445564  8888889999999999999999998 89998876 35566789999


Q ss_pred             HHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCC--cccCCCCCceEEeecCCcchhhHHHHhhhccCCCC
Q 013217          189 MRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGL  266 (447)
Q Consensus       189 i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~--K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~  266 (447)
                      |.++|++||++||.|+||+.|..+.|...-.+  .|+.++|+|  |.|....||+++++++     ++.++++.....|.
T Consensus       141 i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt~--Gd~~~fSF~~~K~ittgEGGav~tnd~-----ela~k~~~lr~hG~  213 (374)
T COG0399         141 IMALAKRHGLPVIEDAAQAHGATYKGKKVGSF--GDIGAFSFHATKNLTTGEGGAVVTNDE-----ELAEKARSLRNHGL  213 (374)
T ss_pred             HHHHHHHcCCeEEEEcchhccCeecCcccccc--cceEEEEecCCCCccccCceEEEeCCH-----HHHHHHHHHHHhCc
Confidence            99999999999999999999998877543332  466666665  9997669999999996     78887765443333


Q ss_pred             CCC---------C-cHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCC----CCeeEEecCCC
Q 013217          267 QGG---------P-HNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGS----DNHLVLVDLRP  331 (447)
Q Consensus       267 ~g~---------p-~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~----~~~~~~v~~~~  331 (447)
                      ...         + .+..+.-+.+|+...+-+..++..++..++++.+.+.|++. ++.+.....    ..|+..+-+.+
T Consensus       214 ~~~~~~~y~~~~~G~N~rm~~iqAAigl~QL~~l~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~~~~i~~~~  293 (374)
T COG0399         214 SRDAVFKYLHEELGYNYRLTEIQAAIGLAQLERLDEINERRREIAQIYAEALKGLPGITLPPEPDGAVHAWHLYTILVDE  293 (374)
T ss_pred             CCCccccceeeecccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCceeeeeeeEEEecC
Confidence            110         0 01112233334443333446777888889999999999874 344333211    23444444444


Q ss_pred             CCCCHHHHHHHHhhcCeEEccCCCCCCCCC------------------CCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217          332 MGIDGARVEKILDMASITLNKNSVPGDKSA------------------LVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       332 ~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~------------------~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~  393 (447)
                      .+.+.+.+...|++.||.....+.|.+..+                  .....+++.++.    +|+++|+++++++|.+
T Consensus       294 ~~~~R~~l~~~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p----~l~~~~~~~V~~~l~~  369 (374)
T COG0399         294 EGISRDALMESLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHP----NLSEEDVDRVIEALKE  369 (374)
T ss_pred             CCCCHHHHHHHHHhCCCCceEEeeccccchhhhcccccccCCCchHHHHhhCeEEccCCC----CCCHHHHHHHHHHHHH
Confidence            356788999999999887444344432210                  011234443322    5679999999999998


Q ss_pred             HHH
Q 013217          394 GVE  396 (447)
Q Consensus       394 ~l~  396 (447)
                      ++.
T Consensus       370 ~~~  372 (374)
T COG0399         370 VLG  372 (374)
T ss_pred             Hhc
Confidence            875

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.95  E-value=6.4e-26  Score=222.85  Aligned_cols=331  Identities=16%  Similarity=0.124  Sum_probs=214.1

Q ss_pred             hcCeeEec--CCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchh---HHHHHHHHHHHHHHHHcCCCCCccceeeecCC
Q 013217           20 FKSLELIA--SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNE---YIDELETLCQKRALAAFNLDENKWGVNVQPLS   94 (447)
Q Consensus        20 ~~~i~l~~--~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~---~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~s   94 (447)
                      +.+|+|.|  ....+..++.+++.++     ..|+.++|+-+|..   +...+. ..++.+++++|++..    .+ +++
T Consensus         6 ~~~~~~~~~~~~g~~~~~~~~a~~~~-----~~~~~~~~~~~g~~~~~~~~~~~-~~~e~lA~~~g~~~~----~i-~~g   74 (370)
T TIGR02539         6 RGSINLNPLQRGGVLTEAARKALVEF-----GDGYSVCDFCGGRLDQITKPPIH-DFLEDLAEFLGMDEA----RV-THG   74 (370)
T ss_pred             ccccccChhhhCCCCcHHHHHHHHHH-----hhccccccccccccccccchHHH-HHHHHHHHHhCCCce----EE-ECC
Confidence            34566644  3446678888887654     34555555433321   011222 223569999999862    33 366


Q ss_pred             cHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhh------
Q 013217           95 GSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAIL------  167 (447)
Q Consensus        95 Gs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~------  167 (447)
                      |++++..++.++++|||+|++..+.|.+.+.        .+...|.  +++.++.+. .++.+|++++++++++      
T Consensus        75 ~~~a~~~~~~~l~~~gd~Vl~~~~~h~s~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~  144 (370)
T TIGR02539        75 AREGKFAVMHALCKEGDWVVLDGLAHYTSYV--------AAERAGL--NVKEVPHTGHPEYKVDPEGYGEVIEEVEDESG  144 (370)
T ss_pred             hHHHHHHHHHHhhCCCCEEEECCcccHHHHH--------HHHHcCC--EEEEEecCCcccCCcCHHHHHHHHHHhhhccC
Confidence            6699999999999999999998887765431        2344555  444444542 3578999999999863      


Q ss_pred             hCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCC-CCceEEe
Q 013217          168 FRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGP-RGGMIFF  244 (447)
Q Consensus       168 ~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp-~gG~i~~  244 (447)
                      .++++|++++++++.  ..|+++|.++|+++|+++++|++|+.|.+.......   +.|++++|+||+++++ +.|++++
T Consensus       145 ~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~~~~~~~---~~di~v~s~sK~~~~~g~~G~l~~  221 (370)
T TIGR02539       145 KPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVSAKEI---GADFIVGSGHKSMAASGPCGVLGM  221 (370)
T ss_pred             CCcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCCcCCCHHHc---CCCEEEeeCcccccCCCCEEEEEE
Confidence            267898888666553  789999999999999999999999877432221111   4799999999998643 3499999


Q ss_pred             ecCCcchhhHHHHhhhccCCCC-------CCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeee
Q 013217          245 KKDPVLGVELESAINNAVFPGL-------QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVS  317 (447)
Q Consensus       245 ~~~~~~~~~~~~~i~~~~~~~~-------~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~  317 (447)
                      ++      ++.+.+.....|..       .++......++...++....  .+-+...+..++++++++.|++.|++++.
T Consensus       222 ~~------~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~--~~l~~~~~~~~~~~~l~~~L~~~g~~~~~  293 (370)
T TIGR02539       222 SE------EWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPHVV--ERVKRWDEEVKKTRWFVAELEDIGFIQLG  293 (370)
T ss_pred             CH------HHHhhhcccccCCccceeeeecccccccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhCCcEEEc
Confidence            87      67776655433211       12222223333344554322  12222344556677899999999998753


Q ss_pred             -CCCCCeeEEecCCCC-------CCCHHHHHHHHhhcCeE-EccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHH
Q 013217          318 -GGSDNHLVLVDLRPM-------GIDGARVEKILDMASIT-LNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIA  388 (447)
Q Consensus       318 -~~~~~~~~~v~~~~~-------~~~~~~~~~~L~~~gI~-v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~  388 (447)
                       .++.+++++++++..       ..+...+.+.|.++||. ++    |+     .++.||++.. ..+    ++|+++++
T Consensus       294 ~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ir----~~-----~~~~iRis~~-~~t----~e~i~~l~  359 (370)
T TIGR02539       294 QKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHGIR----SG-----QTKYFKLSVY-GLT----KEQVEYVV  359 (370)
T ss_pred             cCCCcCceEEEECCchhHHhhhhccccHHHHHHHHhCCCcccc----CC-----cceEEEEEec-CCC----HHHHHHHH
Confidence             224566666665321       11235688899999996 43    21     1348999963 234    99999999


Q ss_pred             HHHHHHHH
Q 013217          389 DFIHEGVE  396 (447)
Q Consensus       389 ~~i~~~l~  396 (447)
                      ++|+++++
T Consensus       360 ~~L~~~~~  367 (370)
T TIGR02539       360 DSFEEIVE  367 (370)
T ss_pred             HHHHHHHH
Confidence            99988765

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.95  E-value=5.2e-26  Score=222.24  Aligned_cols=319  Identities=20%  Similarity=0.189  Sum_probs=218.7

Q ss_pred             CHHHHHHHhhhhhccCCCCCCCCcccCc-hhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCC
Q 013217           33 SRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHD  111 (447)
Q Consensus        33 ~~~v~~a~~~~~~~~~~~g~~~~~~~~g-~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd  111 (447)
                      +|+|++++.+.+.+ |..++.+.+++.| ++....++    +.+++++|++.     .+.+++|++++.+++.++++|||
T Consensus        17 ~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~----~~la~~~~~~~-----~iv~~sg~~a~~~~~~~~~~~gd   86 (349)
T cd06454          17 HPEVIEAAKEALDK-YGVGAGGSRLISGTSDLHEELE----EELAEFHGKEA-----ALVFSSGYAANDGVLSTLAGKGD   86 (349)
T ss_pred             CHHHHHHHHHHHHH-hCCCCCCcCeecCCchHHHHHH----HHHHHHhCCCC-----EEEeccHHHHHHHHHHHhcCCCC
Confidence            68999999998874 4444333333323 34344444    68889999864     34468899999988899999999


Q ss_pred             EEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhh----hCCcEEEEcCCCCCC--CCC
Q 013217          112 RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL----FRPKLIIAGASAYPR--DFD  185 (447)
Q Consensus       112 ~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~----~~~klii~~~~~~~~--~~~  185 (447)
                      +|++.++.|++...        .+...|.  +++.++      .+|++++++++++    .++++|+++++++++  ..|
T Consensus        87 ~Vl~~~~~~~~~~~--------~~~~~g~--~~~~~~------~~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~  150 (349)
T cd06454          87 LIISDSLNHASIID--------GIRLSGA--KKRIFK------HNDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAP  150 (349)
T ss_pred             EEEEehhhhHHHHH--------HHHHcCC--ceEEec------CCCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccC
Confidence            99999888766432        1223443  333332      3588899998875    256778777655543  779


Q ss_pred             hHHHHHHHHHhCCEEEEehhhhcccccccc-----CCCCCCcccEEEeCCCcccCCCCCceEEeecCCcchhhHHHHhhh
Q 013217          186 YPRMRQIADAVGALLMMDMAHISGLVAASV-----VADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINN  260 (447)
Q Consensus       186 ~~~i~~ia~~~g~~livD~a~~~g~~~~~~-----~~~~~~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~  260 (447)
                      +++|.++|+++|+++++|++|..|......     ......+.|++++|+||+++ ++||+++.++      ++.+.+..
T Consensus       151 ~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~gG~i~~~~------~~~~~~~~  223 (349)
T cd06454         151 LPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFG-AVGGYIAGSK------ELIDYLRS  223 (349)
T ss_pred             HHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhc-ccCCEEECCH------HHHHHHHH
Confidence            999999999999999999999777553211     01111257999999999885 4789888876      66666654


Q ss_pred             ccCCC-CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCCCCHHHH
Q 013217          261 AVFPG-LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARV  339 (447)
Q Consensus       261 ~~~~~-~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~  339 (447)
                      ...+. ..++++...++++..+++....  ++...+++.++++.+.+.|.+.|+.++.++ ...+.++.+ +...+..++
T Consensus       224 ~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~~~~~~~~~-~~~~~~~~~  299 (349)
T cd06454         224 YARGFIFSTSLPPAVAAAALAALEVLQG--GPERRERLQENVRYLRRGLKELGFPVGGSP-SHIIPPLIG-DDPAKAVAF  299 (349)
T ss_pred             hchhhhccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhcCCcccCCC-CCcEEEEeC-CChHHHHHH
Confidence            43322 2245566667777778877654  456788899999999999998888766532 233333322 223356788


Q ss_pred             HHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          340 EKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       340 ~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                      .+.|.+.||.+.....+.  .....+.+|++++.+++    ++|+++++++|+++
T Consensus       300 ~~~L~~~gI~~~~~~~~~--~~~~~~~iRi~~~~~~~----~~~i~~~~~~l~~~  348 (349)
T cd06454         300 SDALLERGIYVQAIRYPT--VPRGTARLRISLSAAHT----KEDIDRLLEALKEV  348 (349)
T ss_pred             HHHHHhCCceEEEecCCc--cCCCCCeEEEEEeCCCC----HHHHHHHHHHHHHh
Confidence            888888899986532111  11124689999987777    99999999998753

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.95  E-value=2e-25  Score=219.94  Aligned_cols=346  Identities=18%  Similarity=0.149  Sum_probs=231.2

Q ss_pred             CHHHHHHHHHHHHHhh--cCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC
Q 013217            5 NPEVCEIITKEKERQF--KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD   82 (447)
Q Consensus         5 ~~~~~~~~~~e~~~~~--~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~   82 (447)
                      +.|+.+.+.+-.++..  ..+ |-...++..|.+.+++...+...  .+.+..  +.+   ...+++.+++++++++|++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~--~~~---~~~~~~~~~~~la~~~g~~   75 (371)
T PRK13520          4 EEEILEELEEYRSEDLKYERI-LSSMCTEPHPIARKAHEMFLETN--LGDPGL--FPG---TAKLEEEAVEMLGELLHLP   75 (371)
T ss_pred             HHHHHHHHHHHHhcCCCHHHe-eeeeecCchHHHHHHHHHHHhcC--CCCccc--Ccc---HHHHHHHHHHHHHHHhCCC
Confidence            4566666654333321  113 44445667788889988777542  233322  222   2344456778999999987


Q ss_pred             CCccceeeecCCcHHHHHHHHHHhcC----CCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCH
Q 013217           83 ENKWGVNVQPLSGSPANFEVYTAILK----PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY  158 (447)
Q Consensus        83 ~~~~~~~v~~~sGs~a~~~~~~al~~----pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~  158 (447)
                      ....   +..++|+++|..++.++.+    +||+|++.++.|.++.        +.+...|..+.  .++.+ +++.+|+
T Consensus        76 ~~~~---~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~h~s~~--------~~~~~~g~~~~--~v~~~-~~~~~d~  141 (371)
T PRK13520         76 DAYG---YITSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFSFD--------KAADMLGVELR--RAPLD-DDYRVDV  141 (371)
T ss_pred             CCCe---EEecCcHHHHHHHHHHHHhhccCCCceEEecCcchHHHH--------HHHHHcCceEE--EecCC-CCCcCCH
Confidence            6422   3345677999888776643    6899999887765532        12234454334  44454 4578999


Q ss_pred             HHHHHHhhhhCCcEEEEcCCCCC-C-CCChHHHHHHHHHhCCEEEEehhhhccccccccCCC--C--CCcccEEEeCCCc
Q 013217          159 DMLEKTAILFRPKLIIAGASAYP-R-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--P--FKYCDVVTTTTHK  232 (447)
Q Consensus       159 ~~l~~~~~~~~~klii~~~~~~~-~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~--~--~~~~Di~~~s~~K  232 (447)
                      ++|++++++ ++++|++..++++ + ..|+++|.++|+++|+++++|++|+.+.++......  .  ..++|++++|+||
T Consensus       142 ~~l~~~i~~-~~~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K  220 (371)
T PRK13520        142 KAVEDLIDD-NTIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHK  220 (371)
T ss_pred             HHHHHHHhh-CCEEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCcc
Confidence            999999987 7776665533332 3 789999999999999999999999765432211111  1  1258999999999


Q ss_pred             ccCCCC-CceEEeecCCcchhhHHHHhhhccCCC--------CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHH
Q 013217          233 SLRGPR-GGMIFFKKDPVLGVELESAINNAVFPG--------LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRA  303 (447)
Q Consensus       233 ~l~Gp~-gG~i~~~~~~~~~~~~~~~i~~~~~~~--------~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~  303 (447)
                      |+.+|. +|+++++++     ++.+.+... .+.        ..|+++...++++..+++.+...+++++.++..+++++
T Consensus       221 ~~~a~~~~G~~~~~~~-----~~~~~l~~~-~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~  294 (371)
T PRK13520        221 MGLAPIPAGGILFRDE-----SYLDALAVD-TPYLTSKKQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRW  294 (371)
T ss_pred             ccCccCCceEEEEcCH-----HHHHhhccc-CccccCCCCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHH
Confidence            976543 466666553     455554321 111        12445555677777888877667788889999999999


Q ss_pred             HHHHHHHCCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHH
Q 013217          304 LASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKE  383 (447)
Q Consensus       304 l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~d  383 (447)
                      +.+.|++.|++++.. ...+++.+++.    +.+++.+.|.++||.++.+.        .++.+|++++.+++    ++|
T Consensus       295 l~~~L~~~g~~~~~~-~~~~~v~~~~~----~~~~v~~~L~~~gi~v~~~~--------~~~~iRis~~~~~t----~ed  357 (371)
T PRK13520        295 LAEELKERGFEPVIE-PVLNIVAFDDP----NPDEVREKLRERGWRVSVTR--------CPEALRIVCMPHVT----REH  357 (371)
T ss_pred             HHHHHHhCCCEEecC-CCceEEEEecC----CHHHHHHHHHHCCceeccCC--------CCCEEEEEEECCCC----HHH
Confidence            999999889884433 23445555543    46788999988999986431        13579999888777    999


Q ss_pred             HHHHHHHHHHHHH
Q 013217          384 FVAIADFIHEGVE  396 (447)
Q Consensus       384 i~~l~~~i~~~l~  396 (447)
                      ++++++.|++++.
T Consensus       358 i~~~~~~l~~~~~  370 (371)
T PRK13520        358 IENFLEDLKEVKK  370 (371)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999987654

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.95  E-value=1.4e-25  Score=215.36  Aligned_cols=327  Identities=22%  Similarity=0.248  Sum_probs=237.5

Q ss_pred             eeEecCCCCC----CHHHHHHHhhhhhccCCCCCCCCcccCc-hhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHH
Q 013217           23 LELIASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP   97 (447)
Q Consensus        23 i~l~~~~n~~----~~~v~~a~~~~~~~~~~~g~~~~~~~~g-~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~   97 (447)
                      ++ ..|.||.    .|.+++++...+. +|..|.++.|...| .+...++|    +++++++|.+.     .+..+||..
T Consensus        42 ~n-f~SNdYLGLa~~~~~~~a~~~~~~-~~g~g~~gsR~i~G~~~~h~~LE----~~lA~f~g~e~-----al~f~SGy~  110 (388)
T COG0156          42 LN-FCSNDYLGLASHPELIEAAKAAIR-RYGVGAGGSRLISGTSDLHVELE----EELADFLGAEA-----ALLFSSGFV  110 (388)
T ss_pred             Ee-eeccCcccccCCHHHHHHHHHHHH-HhCCCCCCcCcccCCcHHHHHHH----HHHHHHhCCCc-----EEEEcccch
Confidence            44 4688886    6889999887765 46678888885444 45667788    68999999986     245699999


Q ss_pred             HHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh--C---CcE
Q 013217           98 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--R---PKL  172 (447)
Q Consensus        98 a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~--~---~kl  172 (447)
                      ||..++.++++++|.|+.....|.+.+.        .+++++.  +.+.+..      .|+++|++++++.  .   .++
T Consensus       111 AN~~~i~~l~~~~dli~~D~lnHASiid--------G~rls~a--~~~~f~H------nD~~~Le~~l~~~~~~~~~~~~  174 (388)
T COG0156         111 ANLGLLSALLKKGDLIFSDELNHASIID--------GIRLSRA--EVRRFKH------NDLDHLEALLEEARENGARRKL  174 (388)
T ss_pred             hHHHHHHHhcCCCcEEEEechhhhhHHH--------HHHhCCC--cEEEecC------CCHHHHHHHHHhhhccCCCceE
Confidence            9999999999999999999988876542        3455554  4444433      6889999999762  2   355


Q ss_pred             EEEc--CCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccc---cC-CCCCC--cccEEEeCCCcccCCCCCceEEe
Q 013217          173 IIAG--ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAAS---VV-ADPFK--YCDVVTTTTHKSLRGPRGGMIFF  244 (447)
Q Consensus       173 ii~~--~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~---~~-~~~~~--~~Di~~~s~~K~l~Gp~gG~i~~  244 (447)
                      |++.  .|..+...|+++|.++|++||+++++|+||+.|.+...   .. .-.+.  ..||+++|++|.|+ -.||++.+
T Consensus       175 IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlG-s~Gg~v~g  253 (388)
T COG0156         175 IVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALG-SSGGYIAG  253 (388)
T ss_pred             EEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhc-ccCceeeC
Confidence            5554  34444578999999999999999999999999987642   11 11111  35899999999985 67899999


Q ss_pred             ecCCcchhhHHHHhhhccCCCCCCC-CcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCe
Q 013217          245 KKDPVLGVELESAINNAVFPGLQGG-PHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNH  323 (447)
Q Consensus       245 ~~~~~~~~~~~~~i~~~~~~~~~g~-p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~  323 (447)
                      +.      .+.+.+.....+...++ ..+...++...+++.+.  ...++++++.++...+++.+...|+.+..  +.++
T Consensus       254 ~~------~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l~--~~~~~r~~L~~~~~~~~~~~~~~~~~~~~--s~s~  323 (388)
T COG0156         254 SA------ALIDYLRNRARPFIFSTALPPAVAAAALAALRILE--EGPERRERLQELAAFFRSLLKALGLVLLP--SESP  323 (388)
T ss_pred             cH------HHHHHHHHhCCceeccCCCCHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHhcCCccCC--CCCC
Confidence            88      77777766545555444 34444556666787765  34567888999999999777777876633  4466


Q ss_pred             eEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          324 LVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       324 ~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                      +..+-+.+.. ...++...|.+.||.+.....|-  .|...++||++.++.+|    ++||+++++++.++
T Consensus       324 I~pv~~gd~~-~a~~~s~~l~~~Gi~v~~i~~PT--Vp~gtarlRi~lta~ht----~~~I~~l~~~l~~~  387 (388)
T COG0156         324 IIPVILGDEE-RALEASRALLEEGIYVSAIRPPT--VPKGTARLRITLTAAHT----EEDIDRLAEALSEV  387 (388)
T ss_pred             eeeeEeCCHH-HHHHHHHHHHHCCeeEeeecCCC--CCCCcceEEEEecCCCC----HHHHHHHHHHHHhh
Confidence            6655554322 34567777777799997654332  24456799999998888    99999999998764

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.95  E-value=2.6e-25  Score=219.16  Aligned_cols=311  Identities=19%  Similarity=0.261  Sum_probs=216.6

Q ss_pred             cCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccc
Q 013217           58 YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSG  137 (447)
Q Consensus        58 ~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~  137 (447)
                      |++.....++|    +.+++++|.+.     .+.+++|++|+..++.++++|||+|+ +++.+..+.        ..+..
T Consensus        49 Y~~~~g~~~Le----eaia~~~g~~~-----vv~t~~Gt~Al~la~~al~~pGD~V~-~~~~f~~~~--------~~i~~  110 (431)
T cd00617          49 YAGSKSFYDLE----DAVQDLFGFKH-----IIPTHQGRGAENILFSILLKPGRTVP-SNMHFDTTR--------GHIEA  110 (431)
T ss_pred             cCCCCCHHHHH----HHHHHHHCCCe-----EEEcCCHHHHHHHHHHHhCCCCCEEc-cCCcccchH--------HHHHh
Confidence            34444456777    46788889874     35568888999999999999999874 444333221        13345


Q ss_pred             ccceeEEEecccCC---------CCCCCCHHHHHHHhhhh---CCcEEEEcCCCCC--C-CC---ChHHHHHHHHHhCCE
Q 013217          138 TSIYFESMPYRLDE---------STGLVDYDMLEKTAILF---RPKLIIAGASAYP--R-DF---DYPRMRQIADAVGAL  199 (447)
Q Consensus       138 ~g~~~~~~~~~~~~---------~~~~id~~~l~~~~~~~---~~klii~~~~~~~--~-~~---~~~~i~~ia~~~g~~  199 (447)
                      .|.  +++.+++++         .++.+|+++|++++++.   ++++|+++.|+|+  + ..   ++++|.++|++||++
T Consensus       111 ~Ga--~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~  188 (431)
T cd00617         111 NGA--VPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIP  188 (431)
T ss_pred             CCC--EeEEEecccccccccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCE
Confidence            554  455555542         24569999999999862   3788888877775  2 44   456889999999999


Q ss_pred             EEEehhhhccccc------cccCCCCC--------CcccEEEeCCCcccCCCCCceEEeecCCcchhhHHHHhhhcc--C
Q 013217          200 LMMDMAHISGLVA------ASVVADPF--------KYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAV--F  263 (447)
Q Consensus       200 livD~a~~~g~~~------~~~~~~~~--------~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~--~  263 (447)
                      |+.|++|..+...      .+....++        ..+|.+++|++|.+.++-||+++++++     ++.++++...  +
T Consensus       189 li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~GG~i~~~d~-----~l~~~~~~~~~~~  263 (431)
T cd00617         189 VVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNIGGFLALRDD-----ELYEEARQRVVLY  263 (431)
T ss_pred             EEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCccceEEEeCcH-----HHHHHHHHhcccc
Confidence            9999998765221      12222221        258999999999988888999999984     5777776422  2


Q ss_pred             CC--CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCC-------CC
Q 013217          264 PG--LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPM-------GI  334 (447)
Q Consensus       264 ~~--~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~-------~~  334 (447)
                      .+  ..|+.+...+++++.++++...   .++.++..+++++|.+.|.+.|++++.+ ...|.+++|+...       ..
T Consensus       264 ~~~~~~gG~~~r~~~A~A~gL~e~~~---~~~l~~~~~~r~~l~~~L~~~G~~v~~P-~Ggh~v~~d~~~~~~~~~~~~~  339 (431)
T cd00617         264 EGFVTYGGMAGRDMEALAQGLREAVE---EDYLRHRVEQVRYLGDRLDEAGVPIVEP-AGGHAVFIDAREFLPHIPQEQF  339 (431)
T ss_pred             CCccccccccHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHCCCCccCC-CcceEEEEEhHHhcCCCCcccC
Confidence            22  2466677778888778876433   2446666677899999999999988765 4678999987632       12


Q ss_pred             CHHHHH-HHHhhcCeEEcc-CC--CCCCCCC---C--CCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHHHH
Q 013217          335 DGARVE-KILDMASITLNK-NS--VPGDKSA---L--VPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLE  400 (447)
Q Consensus       335 ~~~~~~-~~L~~~gI~v~~-~~--~p~~~~~---~--~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~~  400 (447)
                      ++..+. .++++.||.+.. +.  .+.++..   .  ....+|+++|   .|+++.++|++++++|.++.++...
T Consensus       340 ~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~p---rr~~t~~~~~~~~~~~~~~~~~~~~  411 (431)
T cd00617         340 PAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAIP---RRVYTQDHMDYVAAAVIALYERRED  411 (431)
T ss_pred             cHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeEEecc---ccccCHHHHHHHHHHHHHHHhhHhh
Confidence            355555 566889998643 22  2333311   1  1358999987   6899999999999999999987643

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.95  E-value=3.3e-25  Score=236.34  Aligned_cols=354  Identities=17%  Similarity=0.135  Sum_probs=232.3

Q ss_pred             CeeEe-cCCCCCCH-HHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-HH
Q 013217           22 SLELI-ASENFTSR-AVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PA   98 (447)
Q Consensus        22 ~i~l~-~~~n~~~~-~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a   98 (447)
                      .+-|. ++.++.++ .|.+++..++.+.  .++|+..+..+....+.++ .+|+++++++|++++++  .|..|+|+ +|
T Consensus        35 ~iYLD~Aatt~~~~~~V~~~~~~~~~~~--~~np~s~~~~s~~~~~~~e-~aR~~ia~~lga~~~~~--~VvFtsnaT~a  109 (805)
T PLN02724         35 VVYLDHAGATLYSESQLEAALADFSSNV--YGNPHSQSDSSMRSSDTIE-SARQQVLEYFNAPPSDY--ACVFTSGATAA  109 (805)
T ss_pred             CEeEeCCCCCCCCHHHHHHHHHHHHhhc--cCCCCcCcchhhhHHHHHH-HHHHHHHHHhCCCccce--EEEEeCChHHH
Confidence            34443 44556565 5555555555543  3556544444444455555 78999999999986542  23346654 88


Q ss_pred             HHHHHHHh-cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-----CCCCCCH--HHHHHHhh----
Q 013217           99 NFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-----STGLVDY--DMLEKTAI----  166 (447)
Q Consensus        99 ~~~~~~al-~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~id~--~~l~~~~~----  166 (447)
                      +..+..++ +++||+|++...+|.+.+..+.     .....|..++.++.+.+.     ..+.+|.  +++++.++    
T Consensus       110 lnlva~~l~~~~gd~Iv~t~~eH~svl~~~~-----~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~  184 (805)
T PLN02724        110 LKLVGETFPWSSESHFCYTLENHNSVLGIRE-----YALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQ  184 (805)
T ss_pred             HHHHHHHCCCCCCCeEEEeeccccchHHHHH-----HHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhhc
Confidence            88888887 7899999998888887653211     112234433443332110     1233443  66766532    


Q ss_pred             -----hhCCcEEEEc-CCCCCC-CCChHHHHHHHHHh--------CCEEEEehhhhccccccccCCCCCCcccEEEeCCC
Q 013217          167 -----LFRPKLIIAG-ASAYPR-DFDYPRMRQIADAV--------GALLMMDMAHISGLVAASVVADPFKYCDVVTTTTH  231 (447)
Q Consensus       167 -----~~~~klii~~-~~~~~~-~~~~~~i~~ia~~~--------g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~  231 (447)
                           ..++++|.++ .+|..+ ..|++.+..+++..        ++++++|++|++|.++.++...   ++|++++|+|
T Consensus       185 ~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~piDv~~~---~~Dfl~~S~H  261 (805)
T PLN02724        185 KREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPDLSRY---PADFVVVSFY  261 (805)
T ss_pred             cccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCCCCChhhc---CCCEEEEecc
Confidence                 1256898887 445455 88999776555532        3579999999999887665444   3899999999


Q ss_pred             cccCCCCC-ceEEeecCCcchhhHHHHhhhccCC-----------------------CCCCCCcHHHHHHHHHHHHHhcC
Q 013217          232 KSLRGPRG-GMIFFKKDPVLGVELESAINNAVFP-----------------------GLQGGPHNHTIGGLAVCLKHAQS  287 (447)
Q Consensus       232 K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~~~~-----------------------~~~g~p~~~~~aal~~al~~~~~  287 (447)
                      ||++||.| |++++++      ++.+.+.+..+.                       ...||++...++++.+|++.+..
T Consensus       262 K~~GgP~G~G~L~vr~------~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~  335 (805)
T PLN02724        262 KIFGYPTGLGALLVRR------DAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNR  335 (805)
T ss_pred             eeccCCCCceEEEEeh------hhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHH
Confidence            99988999 9999998      444433322111                       12588999999999999999887


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHC-------CcEeeeCCC-----CCeeEEecCCCCC-----CCHHHHHHHHhhcCeEE
Q 013217          288 PEFKVYQNKVVSNCRALASRLVEL-------GYKLVSGGS-----DNHLVLVDLRPMG-----IDGARVEKILDMASITL  350 (447)
Q Consensus       288 ~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~-----~~~~~~v~~~~~~-----~~~~~~~~~L~~~gI~v  350 (447)
                      .+++...++..+.++++.+.|.+.       +++++++..     ..+..++.|.-.+     +...++..++.++||.+
T Consensus       336 ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~~~~gI~v  415 (805)
T PLN02724        336 LTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEKLASLSGIQL  415 (805)
T ss_pred             hChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHHHHHhcCcEE
Confidence            778888888889999999999874       366665320     1122233322222     34556777778899999


Q ss_pred             ccCCC--CCCC-C---------------------------CCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          351 NKNSV--PGDK-S---------------------------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       351 ~~~~~--p~~~-~---------------------------~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      +.++.  |+-. .                           ....+.+|+|++.+||    ++|+++++++|++.....
T Consensus       416 R~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt----~eDvd~lv~~l~~~~~~~  489 (805)
T PLN02724        416 RTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMST----FEDCQKFIDFIISSFVST  489 (805)
T ss_pred             eeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCC----HHHHHHHHHHHHHHhhcC
Confidence            88642  2100 0                           1113679999999999    999999999999976543

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.94  E-value=1.1e-24  Score=214.76  Aligned_cols=317  Identities=18%  Similarity=0.154  Sum_probs=211.8

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc----
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  107 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~----  107 (447)
                      ..+.+.+++..++...  .|.++ . +.+.   ..+++.+++++++++|++++..   +..++|++++..++.++.    
T Consensus        32 ~~~~~~~a~~~~~~~~--~~~~~-~-~~~~---~~~~~~~~~~la~~~g~~~~~~---~~~~g~~~~~~~~~~~~~~~~~  101 (373)
T TIGR03812        32 PHPIAVKAYDMFIETN--LGDPG-L-FPGT---KKIEEEVVGSLGNLLHLPDAYG---YIVSGGTEANIQAVRAAKNLAR  101 (373)
T ss_pred             chHHHHHHHHHHhhcC--CCCcc-c-CccH---HHHHHHHHHHHHHHhCCCCCCe---EEeccHHHHHHHHHHHHHHHHh
Confidence            4455677776665432  34443 1 2332   3455567789999999986432   223555688877766653    


Q ss_pred             --CCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCc-EEEEcCCCCCC-C
Q 013217          108 --KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPK-LIIAGASAYPR-D  183 (447)
Q Consensus       108 --~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~k-lii~~~~~~~~-~  183 (447)
                        ++||+|+++++.|.++.        ..+...|.  +++.++++ +++.+|++++++++++ ++. ++++.+++..+ .
T Consensus       102 ~~~~g~~vl~~~~~h~~~~--------~~~~~~G~--~~~~v~~~-~~~~~d~~~l~~~l~~-~~~~vv~~~~~~~tG~~  169 (373)
T TIGR03812       102 EEKRTPNIIVPESAHFSFE--------KAAEMLGL--ELRYAPLD-EDYTVDVKDVEDLIDD-NTIGIVGIAGTTELGQI  169 (373)
T ss_pred             ccCCCcEEEECCcchHHHH--------HHHHHcCC--eEEEEeeC-CCCCcCHHHHHHHHhh-CcEEEEEECCCCCCCcc
Confidence              47899999887765532        12344554  44444455 4678999999999977 664 44444333233 7


Q ss_pred             CChHHHHHHHHHhCCEEEEehhhhccccccc---cCCCCC----CcccEEEeCCCcccCCCC-CceEEeecCCcchhhHH
Q 013217          184 FDYPRMRQIADAVGALLMMDMAHISGLVAAS---VVADPF----KYCDVVTTTTHKSLRGPR-GGMIFFKKDPVLGVELE  255 (447)
Q Consensus       184 ~~~~~i~~ia~~~g~~livD~a~~~g~~~~~---~~~~~~----~~~Di~~~s~~K~l~Gp~-gG~i~~~~~~~~~~~~~  255 (447)
                      .|+++|.++|+++|+++++|++|+.+.+...   ....++    .++|++++|+|||+.+|. +|++++.++     ++.
T Consensus       170 ~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~-----~~~  244 (373)
T TIGR03812       170 DDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSK-----SYL  244 (373)
T ss_pred             CCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCH-----HHH
Confidence            7999999999999999999999875543211   111111    268999999999865553 455544332     565


Q ss_pred             HHhhhccCCCC--------CCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEe
Q 013217          256 SAINNAVFPGL--------QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLV  327 (447)
Q Consensus       256 ~~i~~~~~~~~--------~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v  327 (447)
                      +.+... .+..        .|+++...++++..+++.+...++++..++..+++++|++.|++.|+..+.+ ...+++.+
T Consensus       245 ~~l~~~-~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~v~~  322 (373)
T TIGR03812       245 KYLSVD-APYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKIGFEPVIE-PVLNIVAF  322 (373)
T ss_pred             hhhccc-CcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEcC-CCceEEEE
Confidence            555321 1211        2566777788888889887777888889999999999999999988765433 23344444


Q ss_pred             cCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217          328 DLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       328 ~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~  393 (447)
                      .+.    +..++.+.|.++||.++...        .+..+|++++..++    ++|++++++.|++
T Consensus       323 ~~~----~~~~v~~~L~~~gi~v~~~~--------~~~~iRis~~~~~t----~edid~l~~~L~~  372 (373)
T TIGR03812       323 EVD----DPEEVRKKLRDRGWYVSVTR--------CPKALRIVVMPHVT----REHIEEFLEDLKE  372 (373)
T ss_pred             EeC----CHHHHHHHHHHCCceeccCC--------CCCEEEEEEECCCC----HHHHHHHHHHHhh
Confidence            432    34678889989999986421        13589999988777    9999999999865

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.94  E-value=1.3e-24  Score=216.21  Aligned_cols=334  Identities=19%  Similarity=0.195  Sum_probs=221.0

Q ss_pred             CeeEecCC--CC-CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHH
Q 013217           22 SLELIASE--NF-TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA   98 (447)
Q Consensus        22 ~i~l~~~~--n~-~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a   98 (447)
                      .|+|..+.  .+ .++.+.+++...+.. +..++++.++..|..   .+.+..++++++++|.+.     .|.+++|+++
T Consensus        44 ~i~l~~~~~~~~~~~~~i~~a~~~~~~~-~~~~~~~~~~~~G~~---~l~~~l~~~la~~~g~~~-----~i~~tsG~~a  114 (397)
T PRK06939         44 VINFCANNYLGLANHPELIAAAKAALDS-HGFGMASVRFICGTQ---DLHKELEEKLAKFLGTED-----AILYSSCFDA  114 (397)
T ss_pred             EEEeeccCccccCCCHHHHHHHHHHHHH-cCCCCcccccccCCc---HHHHHHHHHHHHHhCCCc-----EEEEcChHHH
Confidence            36765443  22 588899988887754 333555444433431   233344478889999763     3556899999


Q ss_pred             HHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhh---h--CCcEE
Q 013217           99 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---F--RPKLI  173 (447)
Q Consensus        99 ~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~---~--~~kli  173 (447)
                      +..++.++++|||+|++.+|.|+++..        .+...+.  +++.++      ..|++++++.+++   .  ++++|
T Consensus       115 ~~~~~~~l~~~gd~vi~~~~~~~~~~~--------~~~~~~~--~~~~~~------~~d~~~l~~~i~~~~~~~~~~~~v  178 (397)
T PRK06939        115 NGGLFETLLGKEDAIISDALNHASIID--------GVRLCKA--KRYRYA------NNDMADLEAQLKEAKEAGARHKLI  178 (397)
T ss_pred             HHHHHHHhCCCCCEEEEEhhhhHHHHH--------HHHhcCC--ceEEeC------CCCHHHHHHHHHhhhccCCCCeEE
Confidence            999999999999999999998876532        2233333  333322      2588999888864   2  56777


Q ss_pred             EEcCCCCC-C-CCChHHHHHHHHHhCCEEEEehhhhccccccc-c--CC-CCC-CcccEEEeCCCcccCCCCCceEEeec
Q 013217          174 IAGASAYP-R-DFDYPRMRQIADAVGALLMMDMAHISGLVAAS-V--VA-DPF-KYCDVVTTTTHKSLRGPRGGMIFFKK  246 (447)
Q Consensus       174 i~~~~~~~-~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~-~--~~-~~~-~~~Di~~~s~~K~l~Gp~gG~i~~~~  246 (447)
                      +.+...++ + ..++++|.++|+++|+++++|++|..|..... .  .+ ..+ +..|++++|+||+++|+++|++++++
T Consensus       179 ~~~~v~~~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~r~G~v~~~~  258 (397)
T PRK06939        179 ATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGASGGYTAGRK  258 (397)
T ss_pred             EEecCcCCCCCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCccCceEEEeCH
Confidence            76633322 2 57899999999999999999999866644221 0  00 011 24689999999999889999999887


Q ss_pred             CCcchhhHHHHhhhccCCCC-CCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeE
Q 013217          247 DPVLGVELESAINNAVFPGL-QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLV  325 (447)
Q Consensus       247 ~~~~~~~~~~~i~~~~~~~~-~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~  325 (447)
                            ++.+.+.....+.. .+++.....+++..+++.+..  ..+..+++.++++.+.+.|.+.|+++..+  ...++
T Consensus       259 ------~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~~--~~~~~  328 (397)
T PRK06939        259 ------EVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELLEE--SDELRDRLWENARYFREGMTAAGFTLGPG--EHPII  328 (397)
T ss_pred             ------HHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHcCCCcCCC--CCCEE
Confidence                  67777665433322 234444445555556665532  34667888899999999998888766542  22333


Q ss_pred             EecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          326 LVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       326 ~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      ++.+.. +.+..++.+.|.+.||.+.....|..  +....+||++++.+++    ++|++++++.|.++++.
T Consensus       329 ~~~~~~-~~~~~~~~~~L~~~gI~v~~~~~~~~--~~~~~~iRi~~~~~~~----~~~i~~~l~~L~~~~~~  393 (397)
T PRK06939        329 PVMLGD-AKLAQEFADRLLEEGVYVIGFSFPVV--PKGQARIRTQMSAAHT----KEQLDRAIDAFEKVGKE  393 (397)
T ss_pred             EEEECC-HHHHHHHHHHHHHCCceEeeeCCCCC--CCCCceEEEEECCCCC----HHHHHHHHHHHHHHHHH
Confidence            333321 23456788888778999864322211  1123579999887777    99999999999888764

>PLN00175 aminotransferase family protein; Provisional

Probab=99.94  E-value=1.7e-24  Score=215.37  Aligned_cols=340  Identities=15%  Similarity=0.102  Sum_probs=224.2

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCc
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSG   95 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sG   95 (447)
                      ...|+|..+...  .++.+++++.+.+... ...|+.      .....++++...+++.+.+|.+  ++.   +|.+|+|
T Consensus        54 ~~~i~l~~G~P~~~~~~~~~~~~~~~~~~~-~~~Y~~------~~G~~~Lr~aia~~~~~~~g~~~~~~~---~I~vt~G  123 (413)
T PLN00175         54 HGAINLGQGFPNFDGPDFVKEAAIQAIRDG-KNQYAR------GFGVPELNSAIAERFKKDTGLVVDPEK---EVTVTSG  123 (413)
T ss_pred             CCeEecCCCCCCCCCCHHHHHHHHHHHhcC-CCCcCC------CCCCHHHHHHHHHHHHHHhCCCCCCCC---CEEEeCC
Confidence            466888765553  4778888888776542 122332      2223456555566777777754  331   2445888


Q ss_pred             H-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEE
Q 013217           96 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII  174 (447)
Q Consensus        96 s-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii  174 (447)
                      + +|+..++.++++|||+|++.+|.|..+..        .+...|.  +++.++++++++.+|+++|++.+.+ ++|+|+
T Consensus       124 ~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~~~~l~~~~~~-~~k~i~  192 (413)
T PLN00175        124 CTEAIAATILGLINPGDEVILFAPFYDSYEA--------TLSMAGA--KIKTVTLRPPDFAVPEDELKAAFTS-KTRAIL  192 (413)
T ss_pred             HHHHHHHHHHHhCCCCCEEEEeCCCchhHHH--------HHHHcCC--EEEEEECCcccCCCCHHHHHHhcCc-CceEEE
Confidence            6 89988999999999999999988766531        2344554  5556666655578999999999877 899999


Q ss_pred             EcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCC--CCC---cccEEEeCCCccc--CCCCCceE
Q 013217          175 AGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFK---YCDVVTTTTHKSL--RGPRGGMI  242 (447)
Q Consensus       175 ~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~--~~~---~~Di~~~s~~K~l--~Gp~gG~i  242 (447)
                      +++++||+  ..   ++++|.++|+++|+++++|+++ ..+.+.+...+  .+.   ...+++.|++|.+  +|.|.||+
T Consensus       193 i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y-~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~  271 (413)
T PLN00175        193 INTPHNPTGKMFTREELELIASLCKENDVLAFTDEVY-DKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWA  271 (413)
T ss_pred             ecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEeccc-CccccCCcccChhhCCCCcCcEEEEecchhhccCcchheeee
Confidence            98888886  44   4678999999999999999995 44443321111  111   2347889999986  58888999


Q ss_pred             EeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCC
Q 013217          243 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDN  322 (447)
Q Consensus       243 ~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~  322 (447)
                      ++++      ++.+.+.........+.+...+. +++.+++.. ...+++..+.+.++++.+.+.|++.|+.+..+ ..+
T Consensus       272 v~~~------~l~~~l~~~~~~~~~~~s~~~Q~-a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p-~g~  342 (413)
T PLN00175        272 IAPP------HLTWGVRQAHSFLTFATATPMQW-AAVAALRAP-ESYYEELKRDYSAKKDILVEGLKEVGFKVYPS-SGT  342 (413)
T ss_pred             EeCH------HHHHHHHHHHhhccCCCCHHHHH-HHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCeecCC-Cee
Confidence            9987      67666654332212233333333 334455432 22346777888899999999999988876543 456


Q ss_pred             eeEEecCCCCCC-CHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          323 HLVLVDLRPMGI-DGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       323 ~~~~v~~~~~~~-~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      +++|+++.+.+. +..++.+.| +++||.+.++...+.........+||++..  .    ++++++.++.|.+.++
T Consensus       343 ~f~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~~--~----~e~l~~~~~rL~~~~~  412 (413)
T PLN00175        343 YFVMVDHTPFGFENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCK--D----EETLRAAVERMKTKLK  412 (413)
T ss_pred             EEEEEeccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEcC--C----HHHHHHHHHHHHHHHh
Confidence            778888754444 455666655 678999954321111111124589999752  3    7888888888877654

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.94  E-value=2.5e-24  Score=212.98  Aligned_cols=335  Identities=13%  Similarity=0.055  Sum_probs=219.2

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC--CCCCccceeeecCCc
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLSG   95 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g--~~~~~~~~~v~~~sG   95 (447)
                      ...++|..+++.  +++.+.+++...+.+.. .+|+..      .....+.+...+++.+.+|  ++++    +|.+++|
T Consensus        24 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~-~~Y~~~------~G~~~lr~~la~~~~~~~~~~~~~~----~i~~t~g   92 (382)
T PRK06108         24 EGVLPLWFGESDLPTPDFIRDAAAAALADGE-TFYTHN------LGIPELREALARYVSRLHGVATPPE----RIAVTSS   92 (382)
T ss_pred             CCeEEecCCCCCCCCCHHHHHHHHHHHhcCC-CCCCCC------CCCHHHHHHHHHHHHHHhCCCcCcc----eEEEeCC
Confidence            456889888874  47889999887665421 123321      2234555556678888888  5554    3334666


Q ss_pred             H-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC--CCCCCCHHHHHHHhhhhCCcE
Q 013217           96 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE--STGLVDYDMLEKTAILFRPKL  172 (447)
Q Consensus        96 s-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~id~~~l~~~~~~~~~kl  172 (447)
                      + +++..++.++++|||+|++.+|.|..+..        .+...|.  +++.++++.  +++.+|++++++.+++ ++++
T Consensus        93 ~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~~d~~~l~~~~~~-~~~~  161 (382)
T PRK06108         93 GVQALMLAAQALVGPGDEVVAVTPLWPNLVA--------APKILGA--RVVCVPLDFGGGGWTLDLDRLLAAITP-RTRA  161 (382)
T ss_pred             hHHHHHHHHHHhcCCCCEEEEeCCCccchHH--------HHHHCCC--EEEEeeCCCCCCCccCCHHHHHHhcCc-cceE
Confidence            5 89998999999999999999998765431        2234454  444555542  3457999999998876 8999


Q ss_pred             EEEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhcccccc-c-cCCCCCC-----cccEEEeCCCccc--CCCC
Q 013217          173 IIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAA-S-VVADPFK-----YCDVVTTTTHKSL--RGPR  238 (447)
Q Consensus       173 ii~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~-~-~~~~~~~-----~~Di~~~s~~K~l--~Gp~  238 (447)
                      |+++.++||+  ..   ++++|.++|+++|+++++|+++. ++... + ..+....     ...+++.|+||++  +|.|
T Consensus       162 i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R  240 (382)
T PRK06108        162 LFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYE-RLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWR  240 (382)
T ss_pred             EEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhh-hhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccc
Confidence            9988788875  33   46889999999999999999964 33332 1 1111111     2348889999986  4777


Q ss_pred             CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeee
Q 013217          239 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVS  317 (447)
Q Consensus       239 gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~  317 (447)
                      .|++++++      ++.+.+.........+ ++.....+...++... ...+++..+++.++++.+.+.|.+. |+++..
T Consensus       241 iG~~~~~~------~~~~~~~~~~~~~~~~-~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  312 (382)
T PRK06108        241 LGWLVAPP------ALGQVLEKLIEYNTSC-VAQFVQRAAVAALDEG-EDFVAELVARLRRSRDHLVDALRALPGVEVAK  312 (382)
T ss_pred             eeeeeCCH------HHHHHHHHHHHhcccC-CChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHhCCCCcccC
Confidence            89999987      6766665432211222 2333333333344432 1234677788888888999999874 777654


Q ss_pred             CCCCCeeEEecCCCCCCCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          318 GGSDNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       318 ~~~~~~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      + ....++|+++.. ..+..++.+.| +++||.+..+...   .+...+++|+++..  +    ++++++..+.|.++++
T Consensus       313 p-~~g~~~~~~l~~-~~~~~~~~~~ll~~~gV~v~pg~~f---~~~~~~~~Ris~~~--~----~~~l~~~l~~l~~~l~  381 (382)
T PRK06108        313 P-DGAMYAFFRIPG-VTDSLALAKRLVDEAGLGLAPGTAF---GPGGEGFLRWCFAR--D----PARLDEAVERLRRFLA  381 (382)
T ss_pred             C-CeeEEEEEeCCC-CCCHHHHHHHHHHhCCEEEeCchhh---CCCCCCEEEEEecC--C----HHHHHHHHHHHHHHHh
Confidence            3 335566777753 23566676655 6789999543211   12234689999775  4    8899988888877653

>PLN02483 serine palmitoyltransferase

Probab=99.94  E-value=7.6e-25  Score=221.24  Aligned_cols=333  Identities=18%  Similarity=0.201  Sum_probs=218.0

Q ss_pred             hcCeeEecCCCCC---------CHHHHHHHhhhhhccCCCCCCCCcc-cCchhHHHHHHHHHHHHHHHHcCCCCCcccee
Q 013217           20 FKSLELIASENFT---------SRAVMEAVGSCLTNKYSEGLPGKRY-YGGNEYIDELETLCQKRALAAFNLDENKWGVN   89 (447)
Q Consensus        20 ~~~i~l~~~~n~~---------~~~v~~a~~~~~~~~~~~g~~~~~~-~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~   89 (447)
                      +..|+| .|.||+         ++++.+++.     +|..+..+.|. ++......++|    +.+++++|.+.     .
T Consensus       100 ~~~~n~-~s~~YLgl~~~~~~~~~~~~~ai~-----~~g~~~~~sr~~~g~~~~~~ele----~~lA~~~g~~~-----a  164 (489)
T PLN02483        100 RRCLNL-GSYNYLGFAAADEYCTPRVIESLK-----KYSASTCSSRVDGGTTKLHRELE----ELVARFVGKPA-----A  164 (489)
T ss_pred             ceEEEe-ecCCccCcCCCCHHHHHHHHHHHH-----HhCCCCCccccccCCcHHHHHHH----HHHHHHhCCCc-----E
Confidence            445665 577764         244455543     34455556664 34355566666    68899999764     3


Q ss_pred             eecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhh--
Q 013217           90 VQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL--  167 (447)
Q Consensus        90 v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~--  167 (447)
                      +.+++|+.+|.+++.++++|||+|++.++.|.+...        .+...|.  +++.++.+      |++++++.+++  
T Consensus       165 i~~~~G~~an~~~i~al~~~Gd~Vi~d~~~h~s~~~--------~~~~~Ga--~v~~~~~~------d~~~le~~l~~~i  228 (489)
T PLN02483        165 IVFGMGYATNSTIIPALIGKGGLIISDSLNHNSIVN--------GARGSGA--TIRVFQHN------TPSHLEEVLREQI  228 (489)
T ss_pred             EEECCHHHHHHHHHHHhCCCCCEEEEcchhhHHHHH--------HHHHcCC--eEEEEeCC------CHHHHHHHHHhhh
Confidence            445899999998999999999999999999887642        2345565  44444332      45666665532  


Q ss_pred             ----hCC-----cEEEEcCCCCC---CCCChHHHHHHHHHhCCEEEEehhhhcccccc-c--cC-CCCC--CcccEEEeC
Q 013217          168 ----FRP-----KLIIAGASAYP---RDFDYPRMRQIADAVGALLMMDMAHISGLVAA-S--VV-ADPF--KYCDVVTTT  229 (447)
Q Consensus       168 ----~~~-----klii~~~~~~~---~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~-~--~~-~~~~--~~~Di~~~s  229 (447)
                          .++     +++++..+.++   ...++++|.++|+++|+++++|++|+.|.... +  .. ...+  ...|++++|
T Consensus       229 ~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~S  308 (489)
T PLN02483        229 AEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGT  308 (489)
T ss_pred             hccccccccCCceEEEEECCCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEe
Confidence                122     55555433332   26799999999999999999999998665421 1  00 0111  247899999


Q ss_pred             CCcccCCCCCceEEeecCCcchhhHHHHhhhccCCCC-CCCCcHHHHHHHHHHHHHhcCh----hHHHHHHHHHHHHHHH
Q 013217          230 THKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGL-QGGPHNHTIGGLAVCLKHAQSP----EFKVYQNKVVSNCRAL  304 (447)
Q Consensus       230 ~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~-~g~p~~~~~aal~~al~~~~~~----~~~~~~~~~~~~~~~l  304 (447)
                      +||++ |+.||++++++      ++.+.+........ .++.+...+++..++++.+...    ...+..+++.++++++
T Consensus       309 fSKs~-g~~GG~i~~~~------~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l  381 (489)
T PLN02483        309 FTKSF-GSCGGYIAGSK------ELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFF  381 (489)
T ss_pred             cchhc-ccCceEEEcCH------HHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHH
Confidence            99998 55789999887      77777765432222 2233444444555567654421    2355678899999999


Q ss_pred             HHHHHHCCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHH
Q 013217          305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEF  384 (447)
Q Consensus       305 ~~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di  384 (447)
                      .+.|++.|+.+..+ .++..+++-+... ....++.+.|.++||.+.....|.  .+...+.+|++++..++    ++|+
T Consensus       382 ~~~L~~~G~~v~~~-~~sp~~~l~l~~~-~~~~~~~~~Ll~~GI~v~~~~fp~--~p~~~~~vRi~isa~~t----~edI  453 (489)
T PLN02483        382 RSELQKMGFEVLGD-NDSPVMPIMLYNP-AKIPAFSRECLKQNVAVVVVGFPA--TPLLLARARICISASHS----REDL  453 (489)
T ss_pred             HHHHHHCCCcccCC-CCCCEEEEEECCH-HHHHHHHHHHHHCCcEEeeeCCCC--CCCCCceEEEEeCCCCC----HHHH
Confidence            99999999876643 2344444332211 134567777778899996432222  22334689999988887    9999


Q ss_pred             HHHHHHHHHHHHHH
Q 013217          385 VAIADFIHEGVEIT  398 (447)
Q Consensus       385 ~~l~~~i~~~l~~~  398 (447)
                      +++++.|++++...
T Consensus       454 d~~l~~L~~~~~~~  467 (489)
T PLN02483        454 IKALEVISEVGDLV  467 (489)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999987643

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.94  E-value=1.6e-24  Score=212.52  Aligned_cols=328  Identities=19%  Similarity=0.186  Sum_probs=219.3

Q ss_pred             cCeeEecCCC---CCCHHHHHHHhhhhhccCCCCCCCCcccCc-hhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH
Q 013217           21 KSLELIASEN---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS   96 (447)
Q Consensus        21 ~~i~l~~~~n---~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g-~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs   96 (447)
                      ..|+|..+++   ..+|.+++++...+. +|..++++.++..| .+...+++    +.++++++.+.     .+.+++|+
T Consensus        17 ~~id~~~~~~~g~~~~~~v~~a~~~~~~-~~~~~~~~~~~~~g~~~~~~~l~----~~la~~~~~~~-----~i~~~~G~   86 (360)
T TIGR00858        17 RLLNFSSNDYLGLASHPEVIQAAQQGAE-QYGAGSTASRLVSGNSPLHEELE----EELAEWKGTEA-----ALLFSSGY   86 (360)
T ss_pred             eEEecccCCcccCCCCHHHHHHHHHHHH-hcCCCCCCcCcccCCcHHHHHHH----HHHHHHhCCCC-----EEEECchH
Confidence            4577777643   235899999988774 45455544433222 23333443    67888888543     45568999


Q ss_pred             HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh---CCcEE
Q 013217           97 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF---RPKLI  173 (447)
Q Consensus        97 ~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~---~~kli  173 (447)
                      +++..++.++++|||+|++.++.|++...        .+...|.  +++.++      .+|++++++++++.   ++++|
T Consensus        87 ~~~~~~l~~~~~~gd~v~~~~~~~~~~~~--------~~~~~g~--~~~~~~------~~d~~~l~~~~~~~~~~~~~~v  150 (360)
T TIGR00858        87 LANVGVISALVGKGDLILSDALNHASLID--------GCRLSGA--RVRRYR------HNDVEHLERLLEKNRGERRKLI  150 (360)
T ss_pred             HHHHHHHHHhCCCCCEEEEEccccHHHHH--------HHHhcCC--ceEEec------CCCHHHHHHHHHHcccCCCeEE
Confidence            88887888889999999999888766532        2233443  333322      26899999988753   46777


Q ss_pred             EEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccC---C-CCC--CcccEEEeCCCcccCCCCCceEEee
Q 013217          174 IAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV---A-DPF--KYCDVVTTTTHKSLRGPRGGMIFFK  245 (447)
Q Consensus       174 i~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~---~-~~~--~~~Di~~~s~~K~l~Gp~gG~i~~~  245 (447)
                      +++.+++++  ..|+++|.++|+++|+++++|++|+.|.......   . ..+  ...+++++|+||+|+ ++||+++.+
T Consensus       151 ~~~~~~~~~G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~-~~gG~~~~~  229 (360)
T TIGR00858       151 VTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALG-SYGAYVAGS  229 (360)
T ss_pred             EEeCCccCCCCCcCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhh-ccCcEEEcC
Confidence            777554443  6799999999999999999999987664432100   0 111  146899999999884 577999887


Q ss_pred             cCCcchhhHHHHhhhccCCC-CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCee
Q 013217          246 KDPVLGVELESAINNAVFPG-LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHL  324 (447)
Q Consensus       246 ~~~~~~~~~~~~i~~~~~~~-~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~  324 (447)
                      +      ++.+.+.....+. ..++++...+++...+++....  .++..+++.++++++.+.|.+.++++..+  ...+
T Consensus       230 ~------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~~--~~~~  299 (360)
T TIGR00858       230 Q------ALIDYLINRARTLIFSTALPPAVAAAALAALELIQE--EPWRREKLLALIARLRAGLEALGFTLMPS--CTPI  299 (360)
T ss_pred             H------HHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHHHHHHHHcCCccCCC--CCCE
Confidence            7      6766665433222 2233455556566667765432  24567889999999999999888776532  3446


Q ss_pred             EEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHH
Q 013217          325 VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH  392 (447)
Q Consensus       325 ~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~  392 (447)
                      +|+.+.. ..+..++.+.|.++||.+.....++.  +....++|++++.+++    ++|++++++.|+
T Consensus       300 ~~~~~~~-~~~~~~~~~~l~~~gI~v~~~~~~~~--~~~~~~iRis~~~~~~----~~~i~~~l~~l~  360 (360)
T TIGR00858       300 VPVIIGD-NASALALAEELQQQGIFVGAIRPPTV--PAGTSRLRLTLSAAHT----PGDIDRLAEALK  360 (360)
T ss_pred             EEEEeCC-HHHHHHHHHHHHHCCeeEeeeCCCCC--CCCCceEEEEEcCCCC----HHHHHHHHHhhC
Confidence            6776642 23467888889899999965322221  1123579999998888    999999988763

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.94  E-value=2.7e-25  Score=217.44  Aligned_cols=297  Identities=18%  Similarity=0.171  Sum_probs=200.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh-cCCCCEEEEecCCCCcccCCCccccccccccccce
Q 013217           63 YIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY  141 (447)
Q Consensus        63 ~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al-~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~  141 (447)
                      ...++|    +.+++++|.+.     .+.++||++|+..++.++ ++|||+|+++.+.|.+...        .+...|  
T Consensus        19 ~~~~~~----~~la~~~~~~~-----~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~--------~~~~~g--   79 (352)
T cd00616          19 KVREFE----KAFAEYLGVKY-----AVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATAN--------AILLLG--   79 (352)
T ss_pred             HHHHHH----HHHHHHhCCCe-----EEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHH--------HHHHcC--
Confidence            345565    57889999753     344578999999999998 6899999999988765532        223344  


Q ss_pred             eEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC
Q 013217          142 FESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK  221 (447)
Q Consensus       142 ~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~  221 (447)
                      ++++.++++++++.+|++++++.+++ ++++|++++ .++...|+++|.++|+++|+++++|++|+.|....+.   ++.
T Consensus        80 ~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~-~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~---~~~  154 (352)
T cd00616          80 ATPVFVDIDPDTYNIDPELIEAAITP-RTKAIIPVH-LYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGR---KVG  154 (352)
T ss_pred             CeEEEEecCCCcCCcCHHHHHHhcCc-CCeEEEEEC-CCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCE---Ecc
Confidence            35666667654788999999999876 899988864 3444789999999999999999999999888664432   111


Q ss_pred             -cccEEEeCCC--cccCCCCCceEEeecCCcchhhHHHHhhhccCCCCCC--------CC-cHHHHHHHHHHHHHhcChh
Q 013217          222 -YCDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQG--------GP-HNHTIGGLAVCLKHAQSPE  289 (447)
Q Consensus       222 -~~Di~~~s~~--K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g--------~p-~~~~~aal~~al~~~~~~~  289 (447)
                       ..|+.++|+|  |+++++.||+++++++     ++.+++......+...        .+ ....+..+.+++.......
T Consensus       155 ~~~d~~~~S~~~~K~~~~~~gg~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~l~~  229 (352)
T cd00616         155 TFGDAGAFSFHPTKNLTTGEGGAVVTNDE-----ELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQLEK  229 (352)
T ss_pred             cCcceeEEcCCCCCCCcccCceEEEECCH-----HHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHHHHh
Confidence             2578888866  9998888898888764     5555544321111100        00 0001111111222122234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-CCcEeeeCCC----CCeeEEecCCCC-CCCHHHHHHHHhhcCeEEccCCCCCCCCC--
Q 013217          290 FKVYQNKVVSNCRALASRLVE-LGYKLVSGGS----DNHLVLVDLRPM-GIDGARVEKILDMASITLNKNSVPGDKSA--  361 (447)
Q Consensus       290 ~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~----~~~~~~v~~~~~-~~~~~~~~~~L~~~gI~v~~~~~p~~~~~--  361 (447)
                      +++..++..++++++.+.|.+ .|++++....    ..+.+.+.+... +.+..++.+.|.+.||.++..+.|....+  
T Consensus       230 ~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gI~~~~~~~~~~~~~~~  309 (352)
T cd00616         230 LDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPEAGESRDELIEALKEAGIETRVHYPPLHHQPPY  309 (352)
T ss_pred             hHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCcCCCCHHHHHHHHHHCCCCeeeecCccccCHhh
Confidence            567788889999999999988 5888765422    123334444321 45788999999999998876544432110  


Q ss_pred             ----------C------CCCeEEEecCccccCCCCHHHHHHHHHHHH
Q 013217          362 ----------L------VPGGIRIGSPAMTTRGFSEKEFVAIADFIH  392 (447)
Q Consensus       362 ----------~------~~~~iRig~~~~~~~g~~~~di~~l~~~i~  392 (447)
                                .      ....+|++++..+|    ++||++++++|+
T Consensus       310 ~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t----~~di~~i~~~l~  352 (352)
T cd00616         310 KKLLGYPPGDLPNAEDLAERVLSLPLHPSLT----EEEIDRVIEALR  352 (352)
T ss_pred             hhccCCCcCCChHHHHHHhCeEEccCCCCCC----HHHHHHHHHHhC
Confidence                      0      12579999998888    999999999873

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.94  E-value=6.8e-24  Score=210.77  Aligned_cols=333  Identities=15%  Similarity=0.117  Sum_probs=217.4

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCc
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSG   95 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sG   95 (447)
                      .+.++|..+++.  .++.+.+++...+.+....+|+.    .|   ...+.+.+.+++.+.+|.+  +++   +|.+|+|
T Consensus        32 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~y~~----~G---~~~lr~aia~~~~~~~g~~~~~~~---~I~it~G  101 (399)
T PRK07681         32 HKMIDLSIGNPDMPPADFVREEMVHTANQKESYGYTL----SG---IQEFHEAVTEYYNNTHNVILNADK---EVLLLMG  101 (399)
T ss_pred             CCeEEeCCCCCCCCCCHHHHHHHHHHHhccccCCCCC----CC---cHHHHHHHHHHHHHHhCCCCCCCC---eEEECCC
Confidence            456888777764  57888888887664321123321    12   2345544556666666653  411   4556888


Q ss_pred             H-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-CCCCCHHHHHHHhhhhCCcEE
Q 013217           96 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLI  173 (447)
Q Consensus        96 s-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~~~~~~~kli  173 (447)
                      + +++..++.++++|||+|++.+|.|+++..        .+...|.  ++++++++++ ++.+|++++++.+.+ ++++|
T Consensus       102 ~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~--------~~~~~G~--~~~~v~~~~~~~~~~d~~~l~~~~~~-~~k~v  170 (399)
T PRK07681        102 SQDGLVHLPMVYANPGDIILVPDPGYTAYET--------GIQMAGA--TSYYMPLKKENDFLPDLELIPEEIAD-KAKMM  170 (399)
T ss_pred             cHHHHHHHHHHhCCCCCEEEECCCCccchHH--------HHHhcCC--EEEEEecCCCCCCcCCHHHHHHhccc-cceEE
Confidence            7 88888899999999999999998876532        2334454  6666667644 457899999988866 89999


Q ss_pred             EEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCC---CC---cccEEEeCCCccc--CCCCCc
Q 013217          174 IAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP---FK---YCDVVTTTTHKSL--RGPRGG  240 (447)
Q Consensus       174 i~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~---~~---~~Di~~~s~~K~l--~Gp~gG  240 (447)
                      +++.|+||+  ..+   +++|.++|+++|+++|+|+++ ..+.+.+....+   +.   ...+++.|++|.+  +|.|.|
T Consensus       171 ~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG  249 (399)
T PRK07681        171 ILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAY-AEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRIG  249 (399)
T ss_pred             EEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccc-hhheeCCCCCCChhhCCCCcccEEEEeecccccCCccceeE
Confidence            999878886  555   678888999999999999996 444433211111   11   1347889999987  577889


Q ss_pred             eEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCC
Q 013217          241 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS  320 (447)
Q Consensus       241 ~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~  320 (447)
                      |++.++      ++.+.+.........+. +.....+...++... ...+++..+.+.++++.+.+.|.+.|+++..+ .
T Consensus       250 ~~i~~~------~l~~~~~~~~~~~~~~~-s~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p-~  320 (399)
T PRK07681        250 YMIGNE------EIVRALTQFKSNTDYGV-FLPIQKAACAALRNG-AAFCEKNRGIYQERRDTLVDGFRTFGWNVDKP-A  320 (399)
T ss_pred             EEecCH------HHHHHHHHHHhhcccCC-CHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC-C
Confidence            999877      67777655432111122 222222333344321 12335566777888888999998888876433 3


Q ss_pred             CCeeEEecCCCCCCCHHHHHHHHh-hcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217          321 DNHLVLVDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       321 ~~~~~~v~~~~~~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~  393 (447)
                      ...++|+++.. +.+..++.+.|. ++||.+..+...   ....++++|+++.  .+    ++++++..+.|++
T Consensus       321 ~g~f~~~~l~~-~~~~~~~~~~l~~~~gv~v~pg~~f---~~~~~~~iRis~~--~~----~~~~~~~l~~l~~  384 (399)
T PRK07681        321 GSMFVWAEIPK-GWTSLSFAYALMDRANVVVTPGHAF---GPHGEGFVRIALV--QD----EEVLQQAVENIRN  384 (399)
T ss_pred             eeeEEEEECCC-CCCHHHHHHHHHHhCCEEEeCChhh---CcCCCCeEEEEec--CC----HHHHHHHHHHHHH
Confidence            46677888753 456667766654 599999643211   1112468999975  23    7888888888765

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.94  E-value=2.5e-24  Score=210.30  Aligned_cols=310  Identities=17%  Similarity=0.144  Sum_probs=204.1

Q ss_pred             CCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc
Q 013217           28 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL  107 (447)
Q Consensus        28 ~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~  107 (447)
                      +-++.|++|+++|.....+ |         +.    .+.+.+.+++++++++|.+.    + +.++++++|+.+++.+++
T Consensus        21 g~s~~~~~v~~a~~~~~~~-~---------~~----~~~~~~~~~~~~a~~~g~~~----~-~~~~g~t~al~~al~al~   81 (363)
T TIGR01437        21 GVSTVSDEVADAQKRGAQN-Y---------FE----IKELVNKTGEYIANLLGVED----A-VIVSSASAGIAQSVAAVI   81 (363)
T ss_pred             CCCCCCHHHHHHHHHHHhc-C---------CC----HHHHHHHHHHHHHHhhCCCe----E-EEEcCHHHHHHHHHHHHh
Confidence            3446799999999887643 2         11    12334455688999999874    2 334666799999999999


Q ss_pred             CCCC---------------EEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcE
Q 013217          108 KPHD---------------RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKL  172 (447)
Q Consensus       108 ~pgd---------------~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~kl  172 (447)
                      +|||               +|+++.+.+. .+...+   ...+.+.|.  +++.++.   ++.+|++++++++++ +|++
T Consensus        82 ~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~-~~~~~~---~~~~~~~g~--~~v~v~~---~~~~d~~~le~ai~~-~t~a  151 (363)
T TIGR01437        82 TRGNRYLVENLHDSKIEVNEVVLPKGHNV-DYGAPV---ETMVRLGGG--KVVEAGY---ANECSAEQLEAAITE-KTAA  151 (363)
T ss_pred             cCCCcchhhcccccccccceEEEECccch-hcCCch---HHHHHhcCC--eEEEEcC---CCCCCHHHHHHhcCh-hceE
Confidence            9998               7776553221 110000   012334454  4555444   356999999999987 8997


Q ss_pred             EEE-cC-CCCCC-CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-cccEEEeCCCcccCCCCCceEEeecCC
Q 013217          173 IIA-GA-SAYPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDP  248 (447)
Q Consensus       173 ii~-~~-~~~~~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-~~Di~~~s~~K~l~Gp~gG~i~~~~~~  248 (447)
                      |++ ++ +++.+ ..|+++|.++|+++|+++++|++|...+      ..... ++|++++|+||+|+||++|+++.++  
T Consensus       152 i~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~------~~~~~~g~D~~~~S~~K~l~gp~~G~l~~~~--  223 (363)
T TIGR01437       152 ILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDL------QKYYRLGADLVIYSGAKAIEGPTSGLVLGKK--  223 (363)
T ss_pred             EEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCch------HHHHHcCCCEEEEeCCcccCCCceEEEEEcH--
Confidence            664 44 34334 7899999999999999999999985221      11111 4899999999999999999988866  


Q ss_pred             cchhhHHHHhhhccCCC---C-CCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEeeeC--CC-
Q 013217          249 VLGVELESAINNAVFPG---L-QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSG--GS-  320 (447)
Q Consensus       249 ~~~~~~~~~i~~~~~~~---~-~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~--~~-  320 (447)
                          ++.+.+.......   . .|+   ..++++..|++.+...+ .+..++..++++.+.+.|.+ .|+++...  .. 
T Consensus       224 ----~~i~~~~~~~~~~~~~~~~~~---~~~~gl~aAl~~~~~~~-~~~~~~~~~~~~~l~~~L~~i~g~~~~~~~~~~~  295 (363)
T TIGR01437       224 ----KYIEWVKLQSKGIGRAMKVGK---ENILGLTAALEQYLSTG-KESGAEMVAKLTPFIEALNTLKGVSASIVQDEAG  295 (363)
T ss_pred             ----HHHHHHHhccCCCcceeccCH---HHHHHHHHHHHHHHccC-cccHHHHHHHHHHHHHHHhcCCCeEEEEecCCCC
Confidence                5555543221111   0 122   33677777888766433 23344555677789999988 58887642  11 


Q ss_pred             ---CCeeEEecCCCCCCCHHHHHHHHhhcC--eEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          321 ---DNHLVLVDLRPMGIDGARVEKILDMAS--ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       321 ---~~~~~~v~~~~~~~~~~~~~~~L~~~g--I~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                         +...+.++....++++.++.+.|.+.|  |.++...       ...+.+|++...     ++++|++.++++|+++
T Consensus       296 ~~~~~~~v~~~~~~~g~~~~~l~~~L~~~~~~I~~r~~~-------~~~~~~~l~~~~-----~~~~e~~~~~~~l~~~  362 (363)
T TIGR01437       296 RDIARAEIRFDESELGMTAADVVQALRQGEPAIYTRGYK-------ANEGIIEIDPRS-----VTGGQLDIIVERIREI  362 (363)
T ss_pred             CcCceEEEEEeccCCCCCHHHHHHHHhcCCCCEEEeeee-------ecCCeEEEEeec-----CCHHHHHHHHHHHHHh
Confidence               112223444335778999999998767  6665321       124578888764     3389999999999875

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.94  E-value=1.7e-24  Score=215.39  Aligned_cols=294  Identities=19%  Similarity=0.139  Sum_probs=192.4

Q ss_pred             HHHHHHHHHHHHHcCCCCCccceeeecCCcH-HHHHHHHHHhcCC--CCEEEEecCCCCcccCCCcccccccccccc--c
Q 013217           66 ELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKP--HDRIMGLDLPHGGHLSHGFMTPKRRVSGTS--I  140 (447)
Q Consensus        66 ~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a~~~~~~al~~p--gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g--~  140 (447)
                      ++.+.+++++++++|++.+++  .+. ++|+ +++.+++.+++++  ||+|++.++.|+++....        ...+  .
T Consensus        64 ~~~~~~~~~la~~~g~~~~~v--~~~-~~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~--------~~~~~~~  132 (398)
T cd00613          64 QALFELQTMLCELTGMDVANA--SLQ-DEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVA--------RTRGEPL  132 (398)
T ss_pred             HHHHHHHHHHHHHHCCCccce--ecc-CchHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHHH--------HHhcccC
Confidence            455566789999999875432  233 4455 5566666666776  999999999888764321        1222  0


Q ss_pred             eeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC-CCCh-HHHHHHHHHhCCEEEEehhhhccccccccCCC
Q 013217          141 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR-DFDY-PRMRQIADAVGALLMMDMAHISGLVAASVVAD  218 (447)
Q Consensus       141 ~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~-~~~~-~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~  218 (447)
                      +.+++.++++ +++.+|++++++++.+ +|++|+++.++..+ ..|+ ++|+++|+++|+++++|++|..|.........
T Consensus       133 g~~~~~v~~~-~~~~~d~~~l~~~i~~-~t~~viv~~~~~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~~  210 (398)
T cd00613         133 GIEVVEVPSD-EGGTVDLEALKEEVSE-EVAALMVQYPNTLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEY  210 (398)
T ss_pred             CcEEEEeccC-CCCCcCHHHHHHhcCC-CeEEEEEECCCCCceecchHHHHHHHHHhcCCEEEEEeccccccCCCChHHc
Confidence            1244455554 3467999999999977 89999888665444 5565 99999999999999999998665432211111


Q ss_pred             CCCcccEEEeCCCccc-----CCCCCceEEeecCCcchhhHHHHhhhcc-----------------C----C--CCCCCC
Q 013217          219 PFKYCDVVTTTTHKSL-----RGPRGGMIFFKKDPVLGVELESAINNAV-----------------F----P--GLQGGP  270 (447)
Q Consensus       219 ~~~~~Di~~~s~~K~l-----~Gp~gG~i~~~~~~~~~~~~~~~i~~~~-----------------~----~--~~~g~p  270 (447)
                         ++|++++|+|||+     +||++|++++++      ++.+.+....                 .    .  ...+++
T Consensus       211 ---~~d~~~~s~~K~~~p~g~Ggp~~g~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~  281 (398)
T cd00613         211 ---GADIVVGNLQKTGVPHGGGGPGAGFFAVKK------ELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATS  281 (398)
T ss_pred             ---CCCEEEeeccccCCCCCCCCCceeEEEEhh------hhHhhCCCCeeccccccCCCcceEEecccchhhcccccccc
Confidence               4899999999997     146668999887      4544431100                 0    0  001222


Q ss_pred             c-----HHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCC-CCCHHHHHHHHh
Q 013217          271 H-----NHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPM-GIDGARVEKILD  344 (447)
Q Consensus       271 ~-----~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~L~  344 (447)
                      +     ....++.++++..+...++++..+++.++++++.+.|.+.+......+...+.+++.+... +.+..++.+.|.
T Consensus       282 ~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~L~  361 (398)
T cd00613         282 NICTGQALLALMAAMYIVYLGPEGLKEIAERAHLNANYLAKRLKEVGGVLPFNGPFFHEFVLRLPPLYGIRAEDLAKALI  361 (398)
T ss_pred             cceecHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCeeEEEEEEcCCcchHHHHHHHHhhh
Confidence            2     2223333344555555677888899999999999999886544322222223345555431 335677888888


Q ss_pred             hcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217          345 MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  391 (447)
Q Consensus       345 ~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i  391 (447)
                      +.||.+.... |     ...+.||++++.++|    ++|+++++++|
T Consensus       362 ~~gi~~~~~~-~-----~~~~~lRis~~~~~t----~edid~~~~~L  398 (398)
T cd00613         362 DGGFHAPTMY-L-----PVDGTLMIEPTETET----KEELDALLEAL  398 (398)
T ss_pred             hcCccccccc-c-----CCCCeEEEEcCCCCC----HHHHHHHHHhC
Confidence            9999864311 1     124689999999998    99999998764

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.94  E-value=2.5e-24  Score=211.14  Aligned_cols=324  Identities=14%  Similarity=0.099  Sum_probs=210.2

Q ss_pred             EecCCCCCCHHHHHHHhhhhhccCCCCCCCC-cc---cCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-HHH
Q 013217           25 LIASENFTSRAVMEAVGSCLTNKYSEGLPGK-RY---YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PAN   99 (447)
Q Consensus        25 l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~-~~---~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a~   99 (447)
                      -+.+..++.+++++++.++..+ +  +.|.. ..   ..+.+...+++    +.+++++|++.      +..++|+ +++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~l~----~~la~~~g~~~------i~~~~g~t~al   72 (361)
T cd06452           6 PIQRGGRLTPEARKALIEWGDG-Y--SVCDFCRGRLDEIEKPPIKDFH----HDLAEFLGMDE------ARVTPGAREGK   72 (361)
T ss_pred             hhhcCCCCCHHHHHHHHHHhcc-c--CCccccccccccccCchHHHHH----HHHHHHcCCce------EEEeCCHHHHH
Confidence            3556778899999999877632 1  23221 11   11123344444    68899999842      2235554 899


Q ss_pred             HHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-CCCCCHHHHHHHhhh------hCCcE
Q 013217          100 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAIL------FRPKL  172 (447)
Q Consensus       100 ~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~~~~------~~~kl  172 (447)
                      ..++.++++|||+|++..+.|.+.+.        .+...|.  +++.++.+++ ++.+|++++++++++      .++++
T Consensus        73 ~~~l~~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~l  142 (361)
T cd06452          73 FAVMHSLCEKGDWVVVDGLAHYTSYV--------AAERAGL--NVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPAL  142 (361)
T ss_pred             HHHHHHhcCCCCEEEEcCCcchHHHH--------HHHhcCC--EEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceE
Confidence            99999999999999998877665431        2234454  5555555533 358999999998863      26889


Q ss_pred             EEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCC-CCceEEeecCCc
Q 013217          173 IIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGP-RGGMIFFKKDPV  249 (447)
Q Consensus       173 ii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp-~gG~i~~~~~~~  249 (447)
                      |+++++++++  ..|+++|.++|+++|+++++|++|+.|.........   ++|++++|+||++++| ++|++++++   
T Consensus       143 v~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~---~~d~~~~s~~K~l~~~~~~G~l~~~~---  216 (361)
T cd06452         143 ALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRMPVSGKEL---GADFIVGSGHKSMAASAPIGVLATTE---  216 (361)
T ss_pred             EEEECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCCcCCCHHHc---CCCEEEecCCccccCCCCeEEEEECH---
Confidence            9998777764  779999999999999999999999876442211111   4799999999999654 459999987   


Q ss_pred             chhhHHHHhhhccCC-------CCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCC-C
Q 013217          250 LGVELESAINNAVFP-------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGG-S  320 (447)
Q Consensus       250 ~~~~~~~~i~~~~~~-------~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-~  320 (447)
                         ++.+++.....+       ...+++....++++..+++.+.  +..+...+..++++++.+.|++. |++++... .
T Consensus       217 ---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~l~g~~v~~~~~~  291 (361)
T cd06452         217 ---EWADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPHVK--ERVKRWDEEVEKARWFVAELEKIEGIKQLGEKPK  291 (361)
T ss_pred             ---HHHHHHhccccccccceeeeeccccCchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCCC
Confidence               676766543221       1122333333444444555432  22233455566778999999986 99887421 2


Q ss_pred             CCeeEEecCCC-------CCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217          321 DNHLVLVDLRP-------MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       321 ~~~~~~v~~~~-------~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~  393 (447)
                      ...++.++...       ...++.++.+.|.++||.+..   ++     ....+|+++..     .+++|+++++++|++
T Consensus       292 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~---~~-----~~~~~ri~~~g-----~~~e~~~~l~~al~~  358 (361)
T cd06452         292 NHDLMFFETPSFDEIAKKHKRRGYFLYSELKKRGIHGIK---PG-----LTRYFKLSTYG-----LTWEQVEYVVDAFKE  358 (361)
T ss_pred             CCceEEEEcCCcchhhhhccccchhHHHHHHHcCceEEc---CC-----CceEEEEEecC-----CCHHHHHHHHHHHHH
Confidence            33344444321       011344688899889998631   11     13478988643     348999999999986


Q ss_pred             HH
Q 013217          394 GV  395 (447)
Q Consensus       394 ~l  395 (447)
                      ++
T Consensus       359 ~~  360 (361)
T cd06452         359 IA  360 (361)
T ss_pred             Hh
Confidence            53

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>PRK08960 hypothetical protein; Provisional

Probab=99.94  E-value=4.4e-24  Score=211.35  Aligned_cols=338  Identities=12%  Similarity=0.087  Sum_probs=214.2

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CCCccceeeecCCc
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSG   95 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~~~~~v~~~sG   95 (447)
                      ++.+.|..+++.  +|+.+++++.+.+.+.. .+|+..      .....+.+...+++.+.+|.  +++    +|.+|+|
T Consensus        32 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~-~~Y~~~------~g~~~lr~~ia~~~~~~~g~~~~~~----~i~it~G  100 (387)
T PRK08960         32 HDVIHLEIGEPDFTTAEPIVAAGQAALAAGH-TRYTAA------RGLPALREAIAGFYAQRYGVDVDPE----RILVTPG  100 (387)
T ss_pred             CCeEEeCCCCCCCCCCHHHHHHHHHHHhcCC-CccCCC------CCCHHHHHHHHHHHHHHhCCCCChh----hEEEccC
Confidence            456888877774  58899999988776421 123221      12344554445566655554  454    3445777


Q ss_pred             H-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-CCCCCHHHHHHHhhhhCCcEE
Q 013217           96 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLI  173 (447)
Q Consensus        96 s-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~~~~~~~kli  173 (447)
                      + +++..++.++++|||+|++.+|.|+++..        .+...|.  +++.++++.+ ++.+|++++++++++ +++++
T Consensus       101 ~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~~~~-~~~~i  169 (387)
T PRK08960        101 GSGALLLASSLLVDPGKHWLLADPGYPCNRH--------FLRLVEG--AAQLVPVGPDSRYQLTPALVERHWNA-DTVGA  169 (387)
T ss_pred             cHHHHHHHHHHhcCCCCEEEEcCCCCcchHH--------HHHhcCC--eEEEEecCcccCCCCCHHHHHHHhCc-cceEE
Confidence            6 89999999999999999999999887642        2234454  4444445543 457999999998877 78888


Q ss_pred             EEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC--cccEEEeCCCccc--CCCCCceEEe
Q 013217          174 IAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL--RGPRGGMIFF  244 (447)
Q Consensus       174 i~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~--~~Di~~~s~~K~l--~Gp~gG~i~~  244 (447)
                      +++.++||+  ..+   +++|+++|+++|+++++|+++ .++.+.+.....+.  ...+++.|++|.+  +|.|.|++++
T Consensus       170 ~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y-~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~  248 (387)
T PRK08960        170 LVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIY-HGLTYGVDAASVLEVDDDAFVLNSFSKYFGMTGWRLGWLVA  248 (387)
T ss_pred             EEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccc-cccccCCCCCChhhccCCEEEEeecccccCCcccEEEEEEc
Confidence            888788886  555   467777899999999999985 44443321111111  1237789999986  6788899999


Q ss_pred             ecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCee
Q 013217          245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHL  324 (447)
Q Consensus       245 ~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~  324 (447)
                      ++      ++.+.+.........+.+...+.+ ...++........++..+.+.++++.+.+.|++.|+.+...+..+.+
T Consensus       249 ~~------~~~~~~~~~~~~~~~~~s~~~q~a-~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~f  321 (387)
T PRK08960        249 PP------AAVPELEKLAQNLYISASTPAQHA-ALACFEPETLAILEARRAEFARRRDFLLPALRELGFGIAVEPQGAFY  321 (387)
T ss_pred             CH------HHHHHHHHHHhhhccCCCHHHHHH-HHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcCCCeeEE
Confidence            87      677666554322222222333332 33344321112345666777888888999998888765322234667


Q ss_pred             EEecCCCCCCCHHHHHHH-HhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          325 VLVDLRPMGIDGARVEKI-LDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       325 ~~v~~~~~~~~~~~~~~~-L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      +|+++.....+..++.+. ++++||.+..+...+.  +...+++|+++..  .    .+.+....+.|++++
T Consensus       322 ~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~~~iRi~~~~--~----~~~l~~al~~l~~~~  385 (387)
T PRK08960        322 LYADISAFGGDAFAFCRHFLETEHVAFTPGLDFGR--HQAGQHVRFAYTQ--S----LPRLQEAVERIARGL  385 (387)
T ss_pred             EEEeccccCCCHHHHHHHHHHhCCEEEcCchHhCC--CCCCCeEEEEecC--C----HHHHHHHHHHHHHHH
Confidence            788876433456667665 5679999965432221  1124589999763  2    555555555555443

>PRK02769 histidine decarboxylase; Provisional

Probab=99.94  E-value=1.3e-23  Score=204.97  Aligned_cols=319  Identities=15%  Similarity=0.077  Sum_probs=217.9

Q ss_pred             CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh--cCCC
Q 013217           33 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKPH  110 (447)
Q Consensus        33 ~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al--~~pg  110 (447)
                      +.+.++.+...+.+.+  |+|...+..|. ...++|+.+++++++++|+++++... +.+++||++|..++.+.  +.|+
T Consensus        35 ~~~~~~~~~~~~~~n~--gnp~~~~~~g~-~~~~~e~~~~~~~a~l~g~~~~~~~G-~~TsGgTean~~a~~~ar~~~~~  110 (380)
T PRK02769         35 DYSALKRFFSFSINNC--GDPYSKSNYPL-NSFDFERDVMNFFAELFKIPFNESWG-YITNGGTEGNLYGCYLARELFPD  110 (380)
T ss_pred             CHHHHHHHHHhhhccC--CCccccCCCCC-ChHHHHHHHHHHHHHHhCCCCCCCCE-EEecChHHHHHHHHHHHHHhCCC
Confidence            3455555555555533  55655322222 24568888999999999998654312 22344568887766543  4688


Q ss_pred             CEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh--CCcEEEEcCCCC-CC-CCCh
Q 013217          111 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASAY-PR-DFDY  186 (447)
Q Consensus       111 d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~--~~klii~~~~~~-~~-~~~~  186 (447)
                      ++|++++.+|.+...        .+...|.....++  ++ .++.+|+++|++++++.  +|.+|+++..++ .+ ..|+
T Consensus       111 ~~ii~s~~~H~Sv~k--------a~~~lg~~~~~V~--~~-~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idpi  179 (380)
T PRK02769        111 GTLYYSKDTHYSVSK--------IARLLRIKSRVIT--SL-PNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNI  179 (380)
T ss_pred             cEEEeCCCceehHHH--------HHHHcCCCCceec--cC-CCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCCH
Confidence            999999888877542        2334454334344  45 46889999999999873  388888774333 33 8899


Q ss_pred             HHHHHHHHHhC---CEEEEehhhhccccccccCCCCCC---cccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhh
Q 013217          187 PRMRQIADAVG---ALLMMDMAHISGLVAASVVADPFK---YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAIN  259 (447)
Q Consensus       187 ~~i~~ia~~~g---~~livD~a~~~g~~~~~~~~~~~~---~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~  259 (447)
                      ++|+++|+++|   +++++|+||+.+.++......+++   ++|.+++|+||++++|.| |+++++++      ..+.+.
T Consensus       180 ~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~~vDsis~s~HK~~~~P~g~G~l~~r~~------~~~~~~  253 (380)
T PRK02769        180 KEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFADGIDSIAISGHKFIGSPMPCGIVLAKKK------YVERIS  253 (380)
T ss_pred             HHHHHHHHHhCCCceEEEEEecccceeecccCccccCCccCCCCEEEECCcccCCCCCCcEEEEEehh------hhhhcc
Confidence            99999999998   699999999877664321111222   599999999999988999 99999983      433332


Q ss_pred             h------ccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCC
Q 013217          260 N------AVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMG  333 (447)
Q Consensus       260 ~------~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~  333 (447)
                      .      ...+...|+.+....++++.+++.+...|+++..++..++++++.+.|++.|++++..+ ...  ++.++...
T Consensus       254 ~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~~g~~~~~~p-~~~--~v~f~~~~  330 (380)
T PRK02769        254 VDVDYIGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQANGIPAWRNP-NSI--TVVFPCPS  330 (380)
T ss_pred             cCccccCCCCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEcCC-Cce--EEEEcCCC
Confidence            1      11123467888888889999999998889999999999999999999999999988643 232  33343321


Q ss_pred             CCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          334 IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       334 ~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                         +++.     .|..++..          +..+|+..+.-++    .+.++.+.+-|.+.+..
T Consensus       331 ---~~~~-----~~w~l~~~----------~~~~hi~~~~~~~----~~~~~~f~~dl~~~~~~  372 (380)
T PRK02769        331 ---ERIW-----KKWHLATS----------GNQAHIITMPHHN----KQQIDSLIDELIFDLKN  372 (380)
T ss_pred             ---HHHH-----hCeeEccc----------CCEEEEEECCCCC----HHHHHHHHHHHHHHHhc
Confidence               2221     45555321          2479988776666    78888888777766653

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.94  E-value=1.3e-24  Score=213.93  Aligned_cols=324  Identities=15%  Similarity=0.168  Sum_probs=215.1

Q ss_pred             CCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh-cC
Q 013217           30 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LK  108 (447)
Q Consensus        30 n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al-~~  108 (447)
                      ..+++..++++...+.+.+.        +. .+...++|    +.+++++|++.     .+.++||++|+.+++.++ ++
T Consensus        10 p~~~~~e~~~~~~~l~~~~~--------~~-g~~~~~le----~~la~~~g~~~-----~v~~~sgt~al~lal~al~~~   71 (379)
T PRK11658         10 PAMGDEELAAVKEVLRSGWI--------TT-GPKNQALE----QAFCQLTGNQH-----AIAVSSATAGMHITLMALGIG   71 (379)
T ss_pred             CCCCHHHHHHHHHHHHcCCc--------cC-CHhHHHHH----HHHHHHhCCCe-----EEEECCHHHHHHHHHHHcCCC
Confidence            34566667777777755321        11 23466777    57889999874     244588889999999999 89


Q ss_pred             CCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCCCCChHH
Q 013217          109 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPR  188 (447)
Q Consensus       109 pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~~~~~~~  188 (447)
                      |||+|+++++.|.+...        .+...|.  +++.++++++++.+|++++++++++ +||+|+...+ ++...|+++
T Consensus        72 ~Gd~Viv~~~~~~~~~~--------~~~~~G~--~~v~vd~~~~~~~~d~~~l~~~i~~-~tkav~~~~~-~G~~~d~~~  139 (379)
T PRK11658         72 PGDEVITPSLTWVSTLN--------MIVLLGA--TPVMVDVDRDTLMVTPEAIEAAITP-RTKAIIPVHY-AGAPADLDA  139 (379)
T ss_pred             CCCEEEECCCcHHHHHH--------HHHHcCC--EEEEEecCCCcCCcCHHHHHHhccc-CCeEEEEeCC-CCCcCCHHH
Confidence            99999999988776532        2334454  6666667766778999999999987 8999875542 344789999


Q ss_pred             HHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCceEEeecCCcchhhHHHHhhhccCCCC--
Q 013217          189 MRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGL--  266 (447)
Q Consensus       189 i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~--  266 (447)
                      |.++|+++|+++++|++|+.|....+...... +.++++++.+|++.+++||+++++++     ++.+++......|.  
T Consensus       140 i~~~a~~~gi~vi~D~a~a~g~~~~~~~~g~~-g~~~~Sf~~~K~l~~g~GG~v~~~~~-----~~~~~~~~~~~~G~~~  213 (379)
T PRK11658        140 IRAIGERYGIPVIEDAAHAVGTYYKGRHIGAR-GTAIFSFHAIKNITCAEGGLVVTDDD-----ELADRLRSLKFHGLGV  213 (379)
T ss_pred             HHHHHHHcCCeEEEECCCccCCeECCeecCCC-CCEEEeCCCCCcCcccCceEEEECCH-----HHHHHHHHHHHcCCCc
Confidence            99999999999999999988877654322111 34677788889999999999998764     56655543221111  


Q ss_pred             ------------------CCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeee-CCC---CC-e
Q 013217          267 ------------------QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVS-GGS---DN-H  323 (447)
Q Consensus       267 ------------------~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~---~~-~  323 (447)
                                        .|. + ..+..+.+|+...+..++++..++.+++++.+.+.|.+.++..+. +..   .+ +
T Consensus       214 ~~~~~~~~~~~~~~~~~~~G~-n-~~~~~l~AAl~~~ql~~l~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~  291 (379)
T PRK11658        214 DAFDRQTQGRAPQAEVLTPGY-K-YNLADINAAIALVQLAKLEALNARRREIAARYLQALADLPFQPLSLPAWPHQHAWH  291 (379)
T ss_pred             chhhhhcccCCCcceeecccc-c-cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEE
Confidence                              011 1 112334445555554567778888888899999999775543222 111   11 3


Q ss_pred             eEEecCCC--CCCCHHHHHHHHhhcCeEEccCCCCCCCCCC-C---------------CCeEEEecCccccCCCCHHHHH
Q 013217          324 LVLVDLRP--MGIDGARVEKILDMASITLNKNSVPGDKSAL-V---------------PGGIRIGSPAMTTRGFSEKEFV  385 (447)
Q Consensus       324 ~~~v~~~~--~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~-~---------------~~~iRig~~~~~~~g~~~~di~  385 (447)
                      .+.+.+..  .+.+.+++.+.|.++||.++..+.|.+..+. .               ...+.+  | ++ .+|+++|++
T Consensus       292 ~~~~~~~~~~~~~~r~~~~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~l--P-~~-~~l~~~~~~  367 (379)
T PRK11658        292 LFIIRVDEERCGISRDALMEALKERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSL--P-LF-PDMTDADVD  367 (379)
T ss_pred             EEEEEECCccccCCHHHHHHHHHHCCCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEc--c-CC-CCCCHHHHH
Confidence            33333322  2457788999999999987755444432111 0               011222  2 12 467899999


Q ss_pred             HHHHHHHHHH
Q 013217          386 AIADFIHEGV  395 (447)
Q Consensus       386 ~l~~~i~~~l  395 (447)
                      ++++.|++++
T Consensus       368 ~i~~~i~~~~  377 (379)
T PRK11658        368 RVITALQQIA  377 (379)
T ss_pred             HHHHHHHHHH
Confidence            9999998865

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=99.94  E-value=5.9e-24  Score=190.10  Aligned_cols=334  Identities=17%  Similarity=0.139  Sum_probs=238.8

Q ss_pred             eeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHH
Q 013217           23 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV  102 (447)
Q Consensus        23 i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~  102 (447)
                      ..|.|++..+|+.|++||....     .|+..      .++.+ +.+..++-++..|....+.-  .+..+||+.++.++
T Consensus        19 ~L~gPGPsnl~~~V~~A~~~~~-----lgh~s------Pe~~q-Im~~v~egikyVFkT~n~~t--f~isgsGh~g~E~a   84 (385)
T KOG2862|consen   19 TLLGPGPSNLSGRVQEAMSRPS-----LGHMS------PEFVQ-IMDEVLEGIKYVFKTANAQT--FVISGSGHSGWEAA   84 (385)
T ss_pred             eeecCCCcCCCHHHHHhhcCCc-----cccCC------HHHHH-HHHHHHHHHHHHhccCCCce--EEEecCCcchHHHH
Confidence            4788999999999999996432     33322      23332 33455678888998875532  46678999999999


Q ss_pred             HHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcC--CCC
Q 013217          103 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA--SAY  180 (447)
Q Consensus       103 ~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~--~~~  180 (447)
                      +..++.|||+|++...   |.+++.+.   ...+..|..+++++  .+ .++...++++++.+.+|+|++|+++.  ++.
T Consensus        85 l~N~lePgd~vLv~~~---G~wg~ra~---D~~~r~ga~V~~v~--~~-~G~~~~le~i~~~lsqh~p~~vfv~hgdsST  155 (385)
T KOG2862|consen   85 LVNLLEPGDNVLVVST---GTWGQRAA---DCARRYGAEVDVVE--AD-IGQAVPLEEITEKLSQHKPKAVFVTHGDSST  155 (385)
T ss_pred             HHhhcCCCCeEEEEEe---chHHHHHH---HHHHhhCceeeEEe--cC-cccCccHHHHHHHHHhcCCceEEEEecCccc
Confidence            9999999999998763   33333321   12244565445443  44 45689999999999999999998873  333


Q ss_pred             CCCCC-hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHh
Q 013217          181 PRDFD-YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAI  258 (447)
Q Consensus       181 ~~~~~-~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i  258 (447)
                      +-.+| ++.+.++|++|+++++||.+.+.|........+   ++|+..+..+|.|.+|.| +.|..++.      ..+++
T Consensus       156 gV~q~~~~~~g~lc~k~~~lllVD~VaSlggt~F~mDew---gVDvaytgSQKaL~aP~GLsiisfS~k------a~~~~  226 (385)
T KOG2862|consen  156 GVLQDLLAISGELCHKHEALLLVDTVASLGGTEFEMDEW---GVDVAYTGSQKALGAPAGLSIISFSDK------ALEAI  226 (385)
T ss_pred             cccchHHHHHHHHhhcCCeEEEEechhhcCCccceehhh---cccEEEecchhhcCCCCCcceeecCHH------HHHHH
Confidence            33677 688899999999999999998777554333333   489999999999999999 98887763      22222


Q ss_pred             hh---------------ccCCC-------CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEee
Q 013217          259 NN---------------AVFPG-------LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLV  316 (447)
Q Consensus       259 ~~---------------~~~~~-------~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~  316 (447)
                      +.               ..+.+       +.-||....+.++.+||..+.++|.++.+++++++++++...|++.|++..
T Consensus       227 ~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~GLq~f  306 (385)
T KOG2862|consen  227 RDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEALGLQLF  306 (385)
T ss_pred             hhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccce
Confidence            21               11111       235677888899999999999999999999999999999999999998876


Q ss_pred             eCCCC--Ce-eEEecCCCCCCCHHHHHHHHhh-cCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHH
Q 013217          317 SGGSD--NH-LVLVDLRPMGIDGARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH  392 (447)
Q Consensus       317 ~~~~~--~~-~~~v~~~~~~~~~~~~~~~L~~-~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~  392 (447)
                      ...+.  .. ...+.+ +.++|+.++...+.. +++.+..+     .++..+..+|||+...+.   +.+-|+.+.++|+
T Consensus       307 v~~e~~rlptvttv~v-p~gvDw~dVv~~~~~~~~vei~gg-----lg~~~gKv~RIGl~gcna---~~e~i~~v~~ll~  377 (385)
T KOG2862|consen  307 VVDEELRLPTVTTVKV-PYGVDWKDVVAYAMSHYVVEIGGG-----LGPTVGKVFRIGLLGCNA---NVEYIDNVVELLK  377 (385)
T ss_pred             ecChhhccCcceeeec-CCCCCHHHHHHHHHHhcCEEeccc-----cCCCcccEEEEEEeeccC---CcHHHHHHHHHHH
Confidence            53211  11 112333 567899888877755 47777542     233456689999776654   4788888888888


Q ss_pred             HHHHH
Q 013217          393 EGVEI  397 (447)
Q Consensus       393 ~~l~~  397 (447)
                      .++..
T Consensus       378 ~alq~  382 (385)
T KOG2862|consen  378 LALQR  382 (385)
T ss_pred             HHHhh
Confidence            77754

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.94  E-value=1.2e-24  Score=214.72  Aligned_cols=321  Identities=17%  Similarity=0.168  Sum_probs=209.7

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh-cCCC
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPH  110 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al-~~pg  110 (447)
                      +++..++++...+.+.+         +........+|    +.+++++|.+.     .+.++||++|+..++.++ ++||
T Consensus         8 ~~~~~~~~v~~~~~~~~---------~~~g~~~~~le----~~la~~~g~~~-----~v~~~sgt~al~~~l~al~~~~G   69 (380)
T TIGR03588         8 IDQDDIDAVVEVLKSDF---------LTQGPTVPAFE----EALAEYVGAKY-----AVAFNSATSALHIACLALGVGPG   69 (380)
T ss_pred             CCHHHHHHHHHHHhcCC---------ccCChhHHHHH----HHHHHHHCCCe-----EEEEcCHHHHHHHHHHHcCCCCC
Confidence            45556777766665432         11123345666    57889999875     244578999999999998 8999


Q ss_pred             CEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhh---hCCcEEEEcCCCCCCCCChH
Q 013217          111 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---FRPKLIIAGASAYPRDFDYP  187 (447)
Q Consensus       111 d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~---~~~klii~~~~~~~~~~~~~  187 (447)
                      |+|+++++.|.+...        .+...|.  +++.++++++++.+|++++++++++   .+|++|+++.. ++...|++
T Consensus        70 d~Viv~~~~~~~~~~--------~~~~~G~--~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~t~~v~~~~~-~G~~~~~~  138 (380)
T TIGR03588        70 DRVWTTPITFVATAN--------CALYCGA--KVDFVDIDPDTGNIDEDALEKKLAAAKGKLPKAIVPVDF-AGKSVDMQ  138 (380)
T ss_pred             CEEEeCCcchHHHHH--------HHHHcCC--EEEEEecCCCcCCcCHHHHHHHhhcccCCCceEEEEeCC-CCccCCHH
Confidence            999999987765421        2334454  6666667766788999999999982   27898887532 34478999


Q ss_pred             HHHHHHHHhCCEEEEehhhhccccccccCCCC-CCcccEEEeCCC--cccCCCCCceEEeecCCcchhhHHHHhhhccCC
Q 013217          188 RMRQIADAVGALLMMDMAHISGLVAASVVADP-FKYCDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESAINNAVFP  264 (447)
Q Consensus       188 ~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~-~~~~Di~~~s~~--K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~  264 (447)
                      +|.++|+++|+++|+|++|+.|....+ .+.. ....|+.++|+|  |+++++.||+++++++     ++.+++......
T Consensus       139 ~i~~l~~~~~~~lI~D~a~a~g~~~~~-~~~g~~~~~d~~~~S~~~~K~~~~~~GG~v~~~~~-----~~~~~~~~~~~~  212 (380)
T TIGR03588       139 AIAALAKKHGLKIIEDASHALGAEYGG-KPVGNCRYADATVFSFHPVKIITTAEGGAVTTNDE-----ELAERMRLLRSH  212 (380)
T ss_pred             HHHHHHHHcCCEEEEECCCcccCccCC-EeCCCccccceEEEecCCCCcccccCceEEEECCH-----HHHHHHHHHHHC
Confidence            999999999999999999998865433 1111 114599999998  8898889999998775     565554431111


Q ss_pred             CC---------------------CC-CCcHHHH-HHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCC-
Q 013217          265 GL---------------------QG-GPHNHTI-GGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGG-  319 (447)
Q Consensus       265 ~~---------------------~g-~p~~~~~-aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-  319 (447)
                      +.                     .| ...+..+ +++  ++.++  ..+++..++..++++++.+.|.+. ++.+.... 
T Consensus       213 g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~--g~~qL--~~l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~  288 (380)
T TIGR03588       213 GITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAAL--GLSQL--KKLDRFVAKRREIAARYDRLLKDLPYFTPLTIPL  288 (380)
T ss_pred             CCCCCcccccccccCcceeeeeccccccCccHHHHHH--HHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCC
Confidence            10                     01 0111112 122  22222  236777888899999999999874 34433221 


Q ss_pred             -C--CCeeEEecCCC-CCCCHHHHHHHHhhcCeEEccCCCCCCCCC----------C------CCCeEEEecCccccCCC
Q 013217          320 -S--DNHLVLVDLRP-MGIDGARVEKILDMASITLNKNSVPGDKSA----------L------VPGGIRIGSPAMTTRGF  379 (447)
Q Consensus       320 -~--~~~~~~v~~~~-~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~----------~------~~~~iRig~~~~~~~g~  379 (447)
                       .  ..+...+.+.. .+.+.+++.+.|.+.||.++..+.|.+..+          +      ....|++.++...    
T Consensus       289 ~~~~~~~~~~i~~~~~~~~~r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l----  364 (380)
T TIGR03588       289 GSKSAWHLYPILLDQEFGCTRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPAL----  364 (380)
T ss_pred             CCEeEEEEEEEEECCcCCCCHHHHHHHHHHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCC----
Confidence             1  12333333332 345788999999999999886554533110          0      1134777655444    


Q ss_pred             CHHHHHHHHHHHHHHH
Q 013217          380 SEKEFVAIADFIHEGV  395 (447)
Q Consensus       380 ~~~di~~l~~~i~~~l  395 (447)
                      +++||+++++.|++++
T Consensus       365 ~~~dv~~i~~~l~~~~  380 (380)
T TIGR03588       365 TLEQQQRVVETLRKVL  380 (380)
T ss_pred             CHHHHHHHHHHHHHhC
Confidence            4999999999998764

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.94  E-value=5.5e-24  Score=210.76  Aligned_cols=331  Identities=17%  Similarity=0.184  Sum_probs=218.2

Q ss_pred             hcCeeEecCCC--C-CCHHHHHHHhhhhhccCCCCCCCCcccCc-hhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCc
Q 013217           20 FKSLELIASEN--F-TSRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG   95 (447)
Q Consensus        20 ~~~i~l~~~~n--~-~~~~v~~a~~~~~~~~~~~g~~~~~~~~g-~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sG   95 (447)
                      +..|+|..+++  + .+|.|++++...+.. |..+++..+...+ ....+    ..++++++++|.+.     .+.+++|
T Consensus        39 ~~~id~~~~~~~g~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~g~~~~~~----~l~~~la~~~~~~~-----~i~~~~g  108 (385)
T PRK05958         39 RRMLNFASNDYLGLARHPRLIAAAQQAARR-YGAGSGGSRLVTGNSPAHE----ALEEELAEWFGAER-----ALLFSSG  108 (385)
T ss_pred             ceEEEeeCCCcccCCCCHHHHHHHHHHHHh-cCCCCCCcCcccCCcHHHH----HHHHHHHHHhCCCc-----EEEECcH
Confidence            45688877765  3 468999999888754 4434433332222 22233    34468888888532     3455888


Q ss_pred             HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh--CCcEE
Q 013217           96 SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLI  173 (447)
Q Consensus        96 s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~--~~kli  173 (447)
                      ++++..++.++++|||+|++.++.|+++..        .+...|.  +++.++      ..|++++++++++.  ++.++
T Consensus       109 ~~~~~~~l~~~~~~gd~V~~~~~~~~~~~~--------~~~~~g~--~~~~~~------~~d~~~l~~~i~~~~~~~~lv  172 (385)
T PRK05958        109 YAANLAVLTALAGKGDLIVSDKLNHASLID--------GARLSRA--RVRRYP------HNDVDALEALLAKWRAGRALI  172 (385)
T ss_pred             HHHHHHHHHHhCCCCCEEEEeCccCHHHHH--------HHHhcCC--ceEEeC------CCCHHHHHHHHHhccCCCeEE
Confidence            888888888889999999999988876542        2233443  333322      24889999988763  24556


Q ss_pred             EEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhcccccc-cc-CCC--CCC--cccEEEeCCCcccCCCCCceEEee
Q 013217          174 IAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAA-SV-VAD--PFK--YCDVVTTTTHKSLRGPRGGMIFFK  245 (447)
Q Consensus       174 i~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~-~~-~~~--~~~--~~Di~~~s~~K~l~Gp~gG~i~~~  245 (447)
                      ++++..+++  ..++++|.++|+++|+++|+|++|+.|.... +. ...  .+.  ..++++.|+||++ |+.||+++.+
T Consensus       173 i~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~-~~~Gg~~~~~  251 (385)
T PRK05958        173 VTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKAL-GSSGAAVLGS  251 (385)
T ss_pred             EEEecccCCCCcCCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhc-ccCCcEEEcC
Confidence            655444433  6789999999999999999999997665431 11 000  111  2348889999998 5677888887


Q ss_pred             cCCcchhhHHHHhhhccCCCC-CCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCee
Q 013217          246 KDPVLGVELESAINNAVFPGL-QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHL  324 (447)
Q Consensus       246 ~~~~~~~~~~~~i~~~~~~~~-~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~  324 (447)
                      +      ++.+.+.....+.. .++++...+++...+++.....  .+..+++.++++++.+.|++.|+++..+  ...+
T Consensus       252 ~------~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~--~~~~  321 (385)
T PRK05958        252 E------TLIDYLINRARPFIFTTALPPAQAAAARAALRILRRE--PERRERLAALIARLRAGLRALGFQLMDS--QSAI  321 (385)
T ss_pred             H------HHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHcCCCcCCC--CCCE
Confidence            6      66666543322222 2344555666666677765432  4567888899999999999888876543  3445


Q ss_pred             EEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          325 VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       325 ~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                      +++.+.. ..+..++.+.|.++||.+.....+..  +.....+|++++..++    ++|++++++.|+++
T Consensus       322 ~~~~~~~-~~~~~~~~~~l~~~gI~v~~~~~~~~--~~~~~~lRis~~~~~~----~~~i~~~l~~l~~~  384 (385)
T PRK05958        322 QPLIVGD-NERALALAAALQEQGFWVGAIRPPTV--PAGTSRLRITLTAAHT----EADIDRLLEALAEA  384 (385)
T ss_pred             EEEEeCC-HHHHHHHHHHHHHCCceEecccCCCC--CCCCceEEEEecCCCC----HHHHHHHHHHHHhc
Confidence            5665532 23456788888889999965322211  1123589999987777    99999999998765

>PRK06207 aspartate aminotransferase; Provisional

Probab=99.94  E-value=8e-24  Score=210.33  Aligned_cols=337  Identities=14%  Similarity=0.101  Sum_probs=218.8

Q ss_pred             cCeeEecCC-C--CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--C-CccceeeecCC
Q 013217           21 KSLELIASE-N--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--E-NKWGVNVQPLS   94 (447)
Q Consensus        21 ~~i~l~~~~-n--~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~-~~~~~~v~~~s   94 (447)
                      ..++|..+. +  ..++.+.+++.+.+.+....+|+..   .|   ...+.+.+.+++++.+|.+  + +    +|.+++
T Consensus        40 ~~i~l~~g~~~~~~p~~~~~~~~~~~~~~~~~~~Y~~~---~G---~~~LR~aia~~l~~~~g~~~~~~~----~I~it~  109 (405)
T PRK06207         40 RPVDFSHGDVDAHEPTPGAFELFSAGVERGGVQAYTEY---RG---DADIRELLAARLAAFTGAPVDAAD----ELIITP  109 (405)
T ss_pred             CceecCCcCCCCCCCCHHHHHHHHHHHhcCCCccCCCC---CC---CHHHHHHHHHHHHHHhCCCCCCCC----CEEEeC
Confidence            446776433 3  2567888888776654222344432   11   2345555667888888864  3 3    344577


Q ss_pred             cH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC---C-CCCCCCHHHHHHHhhhhC
Q 013217           95 GS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD---E-STGLVDYDMLEKTAILFR  169 (447)
Q Consensus        95 Gs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~-~~~~id~~~l~~~~~~~~  169 (447)
                      |+ +++..++.++++|||+|++.+|.|+++..        .+...|.  ++++++++   + +++.+|+++|++++++ +
T Consensus       110 Ga~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~--------~~~~~g~--~v~~v~~~~~~~~~~~~~d~~~l~~~~~~-~  178 (405)
T PRK06207        110 GTQGALFLAVAATVARGDKVAIVQPDYFANRK--------LVEFFEG--EMVPVQLDYLSADKRAGLDLDQLEEAFKA-G  178 (405)
T ss_pred             CcHHHHHHHHHHhcCCCCEEEEeCCCchhHHH--------HHHHcCC--EEEEEeccccCcccCCCcCHHHHHHhhhh-c
Confidence            76 89999999999999999999998876531        2334454  44444443   1 2468999999999877 7


Q ss_pred             CcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC---C---cccEEEeCCCccc--CC
Q 013217          170 PKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K---YCDVVTTTTHKSL--RG  236 (447)
Q Consensus       170 ~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~---~---~~Di~~~s~~K~l--~G  236 (447)
                      +++|+++.|+||+  ..+   +++|.++|+++|+++|+|+++ ..+.+.+....++   .   ..-+++.|++|++  +|
T Consensus       179 ~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y-~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpG  257 (405)
T PRK06207        179 VRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLY-SRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSG  257 (405)
T ss_pred             CeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc-cccccCCCCCCchhcCCCCcCcEEEEecchhhccCcc
Confidence            9999898888886  554   678888999999999999995 4444332111111   1   1227889999997  58


Q ss_pred             CCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEe
Q 013217          237 PRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKL  315 (447)
Q Consensus       237 p~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  315 (447)
                      .|.||++.++      ++.+++.........+.+. ....++..+++.- ...+++..+++.++++.+.+.|++. |+++
T Consensus       258 lRiG~ii~~~------~l~~~~~~~~~~~~~~~~~-~~q~a~~~~l~~~-~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~  329 (405)
T PRK06207        258 YRLGVAFGSP------AIIDRMEKLQAIVSLRAAG-YSQAVLRTWFSEP-DGWMKDRIARHQAIRDDLLRVLRGVEGVFV  329 (405)
T ss_pred             cceEEEEcCH------HHHHHHHHHHhHhccCCCH-HHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHhcCCCcee
Confidence            8999999887      6777665533222222222 2233333344321 1224666777778888888888774 7766


Q ss_pred             eeCCCCCeeEEecCCCCCCCHHHHHHHHh-hcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          316 VSGGSDNHLVLVDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       316 ~~~~~~~~~~~v~~~~~~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                      ..+ ....++|++++..+++..++.+.|. ++||.+..+...+   +..++++||++..  +    ++++++..+.|.++
T Consensus       330 ~~p-~gg~fl~~~l~~~~~~~~~~~~~l~~~~gV~v~pG~~F~---~~~~~~~Ris~~~--~----~~~l~~al~rl~~~  399 (405)
T PRK06207        330 RAP-QAGSYLFPRLPRLAVSLHDFVKILRLQAGVIVTPGTEFS---PHTADSIRLNFSQ--D----HAAAVAAAERIAQL  399 (405)
T ss_pred             cCC-CeeEEEEEeCcccCCCHHHHHHHHHHhcCEEEeCchHhC---CCCCCeEEEEecC--C----HHHHHHHHHHHHHH
Confidence            543 3456778888653456677777774 7899996432211   1124689999763  3    67888877777777


Q ss_pred             HHH
Q 013217          395 VEI  397 (447)
Q Consensus       395 l~~  397 (447)
                      ++.
T Consensus       400 l~~  402 (405)
T PRK06207        400 IER  402 (405)
T ss_pred             HHH
Confidence            654

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.94  E-value=1.1e-23  Score=208.14  Aligned_cols=340  Identities=11%  Similarity=0.032  Sum_probs=225.7

Q ss_pred             CCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC-C-CccceeeecCCcHHHHHHHHHHh
Q 013217           29 ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-E-NKWGVNVQPLSGSPANFEVYTAI  106 (447)
Q Consensus        29 ~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~-~-~~~~~~v~~~sGs~a~~~~~~al  106 (447)
                      .+++.|.+.+.+.+.++..+  ++|..   .+. . .++|+.+++++++++|++ + +++++ +.+++||+||..++.+.
T Consensus        50 tt~~~p~~~~~~~~~l~~~~--~np~s---~~~-~-~~le~~~~~~la~llg~~~~~~~~~g-~~TsGgTEAn~~al~~a  121 (431)
T TIGR01788        50 TTWMEPEARKLMDETINKNM--IDKDE---YPQ-T-AEIENRCVNMLADLWHAPAKDAEAVG-TSTIGSSEAIMLGGLAM  121 (431)
T ss_pred             CCCCCHHHHHHHHHHHhcCC--CCccc---Ccc-H-HHHHHHHHHHHHHHhCCCCCCCCCeE-EEechHHHHHHHHHHHH
Confidence            45667889999988886432  45543   222 2 378889999999999998 3 34433 22356679998877654


Q ss_pred             c--------CCC-----CEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEE
Q 013217          107 L--------KPH-----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI  173 (447)
Q Consensus       107 ~--------~pg-----d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~kli  173 (447)
                      .        +.|     -+|++++.+|.+..        +.+...|.  ++..++++++++.+|+++|++++++ +|.+|
T Consensus       122 r~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~--------ka~~~lg~--~v~~i~~d~~~~~vd~~~L~~~i~~-~t~lV  190 (431)
T TIGR01788       122 KWRWRKRMEAAGKPTDKPNLVMGSNVQVCWE--------KFARYFDV--ELREVPMDPGRYVIDPEQVVEAVDE-NTIGV  190 (431)
T ss_pred             HHHHHHHHHhcCCCCCCcEEEEcCcchHHHH--------HHHHHcCc--eeEEEecCCCceeeCHHHHHHHHhh-CCeEE
Confidence            2        112     36888877776543        12334453  4555557754468999999999987 78888


Q ss_pred             EEcCCC-CCC-CCChHHHHHHHHHh------CCEEEEehhhhcccccccc--CCCC--CCcccEEEeCCCcccCCCCC-c
Q 013217          174 IAGASA-YPR-DFDYPRMRQIADAV------GALLMMDMAHISGLVAASV--VADP--FKYCDVVTTTTHKSLRGPRG-G  240 (447)
Q Consensus       174 i~~~~~-~~~-~~~~~~i~~ia~~~------g~~livD~a~~~g~~~~~~--~~~~--~~~~Di~~~s~~K~l~Gp~g-G  240 (447)
                      +++..+ ..+ ..|+++|+++|+++      |+|+++|++|+.+..+...  .+..  ..++|.+++|+|||+.||.| |
T Consensus       191 ~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g~G  270 (431)
T TIGR01788       191 VCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRLPRVKSINVSGHKYGLVYPGVG  270 (431)
T ss_pred             EEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcCCCCceEEEECchhccCCCCCcE
Confidence            887433 333 88999999999999      9999999999755432211  1111  23689999999999889999 9


Q ss_pred             eEEeecCCcchhhHHHHhhhc--cC------CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-
Q 013217          241 MIFFKKDPVLGVELESAINNA--VF------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-  311 (447)
Q Consensus       241 ~i~~~~~~~~~~~~~~~i~~~--~~------~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-  311 (447)
                      +++++++.    .+.+.+...  ..      .+..++......++++..++.+...++.+..++..+++++|.+.|.+. 
T Consensus       271 ~l~~r~~~----~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~  346 (431)
T TIGR01788       271 WVIWRDEE----ALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLG  346 (431)
T ss_pred             EEEEeChH----HcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99998741    121222110  00      112233333344456777777777789999999999999999999884 


Q ss_pred             CcEeeeCCCCCeeEEecCCC---CCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHH
Q 013217          312 GYKLVSGGSDNHLVLVDLRP---MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIA  388 (447)
Q Consensus       312 g~~~~~~~~~~~~~~v~~~~---~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~  388 (447)
                      +++++.+.....++.+.+.+   .+++..++.+.|.+.|+.+.....|...  .....+|+.+....+    .+.++.++
T Consensus       347 ~~el~~~~~~~~iV~Fr~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~p~~~--~~~~~lR~~~~~~~~----~~~~~~~~  420 (431)
T TIGR01788       347 PFEIISDGSGIPLVAFKLKDDADPGYTLYDLSHRLRERGWIVPAYTLPKNA--EDIVVMRIVVREGFS----RDLAELLI  420 (431)
T ss_pred             CEEEeeCCCCceEEEEEeCCCCCCCcCHHHHHHHHHHCCCcccCCCCCCcc--CCeEEEEEEecCCCC----HHHHHHHH
Confidence            58888642233333333332   1356678999999999987543333211  012358998765555    78888888


Q ss_pred             HHHHHHHHH
Q 013217          389 DFIHEGVEI  397 (447)
Q Consensus       389 ~~i~~~l~~  397 (447)
                      +.|.+++..
T Consensus       421 ~~~~~~~~~  429 (431)
T TIGR01788       421 EDIEAALAY  429 (431)
T ss_pred             HHHHHHHHh
Confidence            888877653

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PRK12414 putative aminotransferase; Provisional

Probab=99.94  E-value=7e-24  Score=209.54  Aligned_cols=345  Identities=15%  Similarity=0.168  Sum_probs=220.3

Q ss_pred             HHHHHHHHHHHhhcCeeEecCCCCC--CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--C
Q 013217            8 VCEIITKEKERQFKSLELIASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--E   83 (447)
Q Consensus         8 ~~~~~~~e~~~~~~~i~l~~~~n~~--~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~   83 (447)
                      +...+... ..+...|+|..+++..  ++.+.+++...+.... .+|+.      .+....+.+.+++++++++|++  +
T Consensus        18 ~~~~~~~~-~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~-~~Y~~------~~G~~~lr~~ia~~l~~~~g~~~~~   89 (384)
T PRK12414         18 IFTVIGQL-AAQHDALNLSQGAPNFAPDPALVEGVARAMRDGH-NQYAP------MAGIAALREALAEKTERLYGARYDP   89 (384)
T ss_pred             HHHHHHHH-HHhCCeEEcCCCCCCCCCCHHHHHHHHHHHHhCC-CCcCC------CCCcHHHHHHHHHHHHHHhCCCCCC
Confidence            44444332 3455678988777744  7788888877654321 22322      2223455556667888899985  2


Q ss_pred             CccceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHH
Q 013217           84 NKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLE  162 (447)
Q Consensus        84 ~~~~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~  162 (447)
                      .+   +|..++|+ +++..++.++++|||+|++.+|.|.++..        .+...|.  +++.++++++++.+|+++++
T Consensus        90 ~~---~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~d~~~l~  156 (384)
T PRK12414         90 AS---EVTVIASASEGLYAAISALVHPGDEVIYFEPSFDSYAP--------IVRLQGA--TPVAIKLSPEDFRVNWDEVA  156 (384)
T ss_pred             CC---cEEEECChHHHHHHHHHHhcCCCCEEEEeCCCccchHH--------HHHHcCC--EEEEEecCccccccCHHHHH
Confidence            11   23346665 89999999999999999999998765421        2234454  55566666556789999999


Q ss_pred             HHhhhhCCcEEEEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCC---C---cccEEEeCCC
Q 013217          163 KTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K---YCDVVTTTTH  231 (447)
Q Consensus       163 ~~~~~~~~klii~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~---~---~~Di~~~s~~  231 (447)
                      +.+++ ++++|+++.++||+  ..   ++++|.++|+++|+++++|+++. .+.+.+....++   +   ...+++.|++
T Consensus       157 ~~l~~-~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~-~~~~~~~~~~~~~~~~~~~~~~i~~~SfS  234 (384)
T PRK12414        157 AAITP-RTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYE-HVVFDGARHHSMARHRELAERSVIVSSFG  234 (384)
T ss_pred             hhcCc-ccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhh-hccCCCCCccCcccCcCccCcEEEEeccc
Confidence            99876 89999998888886  32   57889999999999999999964 333322111111   1   1248899999


Q ss_pred             ccc--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHH
Q 013217          232 KSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLV  309 (447)
Q Consensus       232 K~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~  309 (447)
                      |.+  +|.|.||+++++      ++.+.+.........+.+...+ .++..+++.  ...+.+..+.+.++++.+.+.|+
T Consensus       235 K~~~~pGlRiG~~v~~~------~l~~~l~~~~~~~~~~~s~~~q-~a~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~  305 (384)
T PRK12414        235 KSYHVTGWRVGYCLAPA------ELMDEIRKVHQFMVFSADTPMQ-HAFAEALAE--PASYLGLGAFYQRKRDLLARELA  305 (384)
T ss_pred             ccccCccceEEEEecCH------HHHHHHHHHHhheecCCCcHHH-HHHHHHhcC--ChHHHHHHHHHHHHHHHHHHHHH
Confidence            987  678889999987      6666665533211122222222 233333332  12234556777888899999999


Q ss_pred             HCCcEeeeCCCCCeeEEecCCCC-C-CCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHH
Q 013217          310 ELGYKLVSGGSDNHLVLVDLRPM-G-IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAI  387 (447)
Q Consensus       310 ~~g~~~~~~~~~~~~~~v~~~~~-~-~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l  387 (447)
                      +.|+.+..+ ..+.++|+++... . .+.+.+.+.|.++||.+..+...+. .....+++||++..  +    ++++++.
T Consensus       306 ~~g~~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~-~~~~~~~iRis~~~--~----~~~~~~~  377 (384)
T PRK12414        306 GSRFELLPS-EGSFFMLARFRHFSDESDSDFVLRLIRDARVATIPLSAFYT-DGTDTGLIRLSFSK--D----DATLVEG  377 (384)
T ss_pred             hCCCeecCC-CcceEEEEcccccCCCCHHHHHHHHHHhCCEEEecchhhcC-CCCCCCEEEEEecC--C----HHHHHHH
Confidence            888876543 3466677777542 2 2344555778889999954321111 11124589999762  3    6777666


Q ss_pred             HHHHH
Q 013217          388 ADFIH  392 (447)
Q Consensus       388 ~~~i~  392 (447)
                      .+.|.
T Consensus       378 ~~rl~  382 (384)
T PRK12414        378 ARRLC  382 (384)
T ss_pred             HHHHh
Confidence            66554

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.94  E-value=1.2e-24  Score=211.80  Aligned_cols=333  Identities=13%  Similarity=0.076  Sum_probs=224.9

Q ss_pred             CeeEecCCCCCCHHHHHHHhhhhhccCCC--CCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHH
Q 013217           22 SLELIASENFTSRAVMEAVGSCLTNKYSE--GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN   99 (447)
Q Consensus        22 ~i~l~~~~n~~~~~v~~a~~~~~~~~~~~--g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~   99 (447)
                      .+.|+|++..+|+.|+++|...+.+....  |.+.. .+...++.+.++ .++++++++||++.+.. +.+...||+.++
T Consensus         4 ~~l~~pGP~~~p~~V~~a~~~~~~~~~~~~~g~~~~-~hr~~~f~~~~~-~~~~~l~~l~~~~~~~~-v~~~~gsgt~~~   80 (360)
T PRK05355          4 VYNFSAGPAMLPEEVLEQAQQELLDWNGSGMSVMEI-SHRSKEFEAVAE-EAEADLRELLNIPDNYK-VLFLQGGASLQF   80 (360)
T ss_pred             eeeccCCCCCCCHHHHHHHHHHhhccccCCcccccc-CCCCHHHHHHHH-HHHHHHHHHhCCCCCcE-EEEEcCCchHHH
Confidence            46789999999999999999876431111  11111 123445555554 67889999999843322 345567788999


Q ss_pred             HHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHH-HhhhhCCcEEEEcCC
Q 013217          100 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEK-TAILFRPKLIIAGAS  178 (447)
Q Consensus       100 ~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~-~~~~~~~klii~~~~  178 (447)
                      .+++.+++.+||++++...-   .+++.+.   ..++..|.. .++.  .++..+..+..++++ .+++ ++++|.+++.
T Consensus        81 Ea~~~nl~~~g~~~l~i~~G---~fg~r~~---~~a~~~g~~-~~~~--~~~~~g~~~~~~~~~~~l~~-~~~~V~~th~  150 (360)
T PRK05355         81 AMVPMNLLGGGKKADYVDTG---SWSKKAI---KEAKKYGEV-NVAA--SSEDDGFTYIPPLDEWQLSD-DAAYVHYTSN  150 (360)
T ss_pred             HHHHHhcCCCCCeEEEEECC---HHHHHHH---HHHHHhCCc-eEEe--cccccCCCCCCChhhccCCC-CCCEEEEccC
Confidence            99999999999999987633   3333321   122334431 2222  332234455555544 6666 7999998854


Q ss_pred             CCCC--CC-ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhH
Q 013217          179 AYPR--DF-DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVEL  254 (447)
Q Consensus       179 ~~~~--~~-~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~  254 (447)
                      .+++  .. |+++|      +|+++++|++|++|....++.     ..|++++|.||+| ||.| |++++++      +.
T Consensus       151 eTstGv~~~~i~~i------~g~l~vVDavss~g~~~idv~-----~~d~~~~ssqK~l-gP~Glg~l~~s~------~~  212 (360)
T PRK05355        151 ETIDGTEFHELPDT------GDVPLVADMSSDILSRPIDVS-----KFGLIYAGAQKNI-GPAGLTIVIVRE------DL  212 (360)
T ss_pred             CCcceEecCccccc------CCCcEEEEcCccccCccCCHH-----HccEEEEeccccc-cCCceEEEEECH------HH
Confidence            4443  44 66655      899999999999987654432     3579999999987 6999 9999998      44


Q ss_pred             HHHhhhc-----------cCCCCCCCCcHHHHHHHHHHHHHhcCh-hHHHHHHHHHHHHHHHHHHHHHCCcE-eeeC-CC
Q 013217          255 ESAINNA-----------VFPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVELGYK-LVSG-GS  320 (447)
Q Consensus       255 ~~~i~~~-----------~~~~~~g~p~~~~~aal~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~-~~~~-~~  320 (447)
                      .+++.+.           ......+||+.+.+.++..+++++... +++.+.++..+.++++.+.|++.|+. .+.. ..
T Consensus       213 l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~  292 (360)
T PRK05355        213 LGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDFYRNPVAPED  292 (360)
T ss_pred             HhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCChhh
Confidence            4443321           111235899999999999999999888 79999999999999999999997752 2221 11


Q ss_pred             CC-eeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          321 DN-HLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       321 ~~-~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      .+ ....+.+.. +....++...+.++||.+..    +..   ..+.+|+|+..+++    .+|++++.++|++++.+
T Consensus       293 rs~~v~sf~~~~-~~~~~~~~~~~~~~Gi~~~~----~~~---~~g~vRiS~~~~nt----~eei~~l~~~l~~~~~~  358 (360)
T PRK05355        293 RSRMNVPFTLAD-EELDKKFLAEAKAAGLVGLK----GHR---SVGGMRASIYNAMP----LEGVQALVDFMKEFERR  358 (360)
T ss_pred             cCCcEEEEEcCC-hHHHHHHHHHHHHCCCcccC----CCC---ccCcEEEECCCCCC----HHHHHHHHHHHHHHHHh
Confidence            12 222333322 22334565677789998732    221   23579999999998    99999999999997753

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.94  E-value=1.4e-23  Score=212.07  Aligned_cols=330  Identities=17%  Similarity=0.162  Sum_probs=214.2

Q ss_pred             CCCCHHHHHHHhhhhhccCCCCCCCCcccC--chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHH---HH
Q 013217           30 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYG--GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV---YT  104 (447)
Q Consensus        30 n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~--g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~---~~  104 (447)
                      ..+||.+.+++.+.-  .|. +|.  .|..  -.+...++....++++++++|++.    +.+..++|+.+....   +.
T Consensus        80 ~~~~p~i~~~~~~~~--~~~-~~t--pYq~e~~sqG~lel~~~~~~~la~l~G~~~----~~l~~~~GA~a~~~~l~~~r  150 (481)
T PRK04366         80 MKYNPKINEKVARLP--GFA-ELH--PLQPEETVQGALELMYELQEWLKEITGMDA----VTLQPAAGAHGELTGLLMIR  150 (481)
T ss_pred             CCCCHHHHHHHHhCc--chh-cCC--CCCChhhhhHHHHHHHHHHHHHHHHhCCCc----eEEEeCcHHHHHHHHHHHHH
Confidence            356888888876531  111 221  1111  122233445567789999999985    356667777554432   22


Q ss_pred             -HhcCCCC----EEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCC
Q 013217          105 -AILKPHD----RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA  179 (447)
Q Consensus       105 -al~~pgd----~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~  179 (447)
                       .++++||    +|+++++.|+++..        .+...|.  +++.++++ .++.+|+++|++++++ ++++|+++.|+
T Consensus       151 ~~~~~~Gd~~~~~Vlv~~~~hp~~~~--------~~~~~G~--~vv~v~~~-~~~~~D~e~L~~~i~~-~t~~V~v~~Pn  218 (481)
T PRK04366        151 AYHEARGDTKRTEVIVPDSAHGTNPA--------SAAMAGF--KVVEIPSN-EDGLVDLEALKAAVGE-DTAALMLTNPN  218 (481)
T ss_pred             HHhhccCcCCCCEEEEcCCccHhHHH--------HHHHcCC--EEEEeecC-CCCCcCHHHHHhhccc-CCeEEEEeCCC
Confidence             3467777    99999998877643        2234454  55555565 4578999999999987 89998888777


Q ss_pred             CCCC--CChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-cccEEEeCCCcccCCCCC------ceEEeecCCcc
Q 013217          180 YPRD--FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGPRG------GMIFFKKDPVL  250 (447)
Q Consensus       180 ~~~~--~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-~~Di~~~s~~K~l~Gp~g------G~i~~~~~~~~  250 (447)
                      ..+.  .|+++|+++|+++|+++++|++|..+++..  . .|-. ++|++++++||||++|.|      |++++++    
T Consensus       219 ~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~--~-~~~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~----  291 (481)
T PRK04366        219 TLGLFERNILEIAEIVHEAGGLLYYDGANLNAILGK--A-RPGDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKE----  291 (481)
T ss_pred             CccccchHHHHHHHHHHHcCCEEEEEecChhhhccc--C-CccccCCCEEEEechhhcCCCCCCCCCCeeeeeehh----
Confidence            5453  479999999999999999999997664321  1 1222 699999999999875542      6888887    


Q ss_pred             hhhHHHHhhhcc---------C----C-----CCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCC
Q 013217          251 GVELESAINNAV---------F----P-----GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG  312 (447)
Q Consensus       251 ~~~~~~~i~~~~---------~----~-----~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  312 (447)
                        ++.+.+....         .    +     ...++.+...+.+.+..+..+..+++++..++..+++++|+++|.+. 
T Consensus       292 --~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~-  368 (481)
T PRK04366        292 --ELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI-  368 (481)
T ss_pred             --hhHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-
Confidence              3443331100         0    0     00112222222233333444455567787888899999999999885 


Q ss_pred             cEeeeCCCCCeeEEecCC---CCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHH
Q 013217          313 YKLVSGGSDNHLVLVDLR---PMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIAD  389 (447)
Q Consensus       313 ~~~~~~~~~~~~~~v~~~---~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~  389 (447)
                      +++.......+.++++..   ..+.+..++.+.|.++||.+.....|.    ...+.+|++++.++|    ++|++++++
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~----~~~~~l~is~~e~~t----~edid~l~~  440 (481)
T PRK04366        369 YDLPYDRPCMHEFVLSGKKLKETGVRTLDIAKRLLDYGFHPPTIYFPL----IVPEALMIEPTETES----KETLDAFIA  440 (481)
T ss_pred             CcccCCCCeeEEEEEECccccccCCCHHHHHHHHHHCCccCCcccccc----ccCCeEEEcccCCCC----HHHHHHHHH
Confidence            444332222244555532   234567889999999999875322221    124589999999998    999999999


Q ss_pred             HHHHHHHHH
Q 013217          390 FIHEGVEIT  398 (447)
Q Consensus       390 ~i~~~l~~~  398 (447)
                      +|.++....
T Consensus       441 ~l~~i~~~~  449 (481)
T PRK04366        441 AMKQIAEEA  449 (481)
T ss_pred             HHHHHHHHH
Confidence            999887654

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.94  E-value=1.3e-24  Score=213.82  Aligned_cols=326  Identities=13%  Similarity=0.075  Sum_probs=216.7

Q ss_pred             CeeEecCCCCCCHH-HHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCC-CccceeeecCCcHHHH
Q 013217           22 SLELIASENFTSRA-VMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE-NKWGVNVQPLSGSPAN   99 (447)
Q Consensus        22 ~i~l~~~~n~~~~~-v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~-~~~~~~v~~~sGs~a~   99 (447)
                      .+.|+++...+++. |++++...+..     ..    +.+.++.+.++ .+++.+++++|++. .++  .+...|||.++
T Consensus        13 ~~~f~~Gp~~~~~~~v~~a~~~~~~~-----~~----hr~~~f~~~~~-~~r~~l~~l~~~~~~~~v--~~~~gs~T~~~   80 (378)
T PRK03080         13 DPRFSSGPCKKRPGWQLEALADALLG-----RS----HRQKPVKALLK-RVIEGTRELLSLPEGYEV--GIVPGSDTGAW   80 (378)
T ss_pred             CCCcCCCCcCCChHHHHHHHHhhhcc-----cC----cCCHHHHHHHH-HHHHHHHHHhCCCCCceE--EEECCchHHHH
Confidence            46788889988888 99999754321     11    12335555554 78899999999853 232  22234788999


Q ss_pred             HHHHHHhcCC-CCEEEEecCCCCcccCCCccccccccccccc-eeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcC
Q 013217          100 FEVYTAILKP-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA  177 (447)
Q Consensus       100 ~~~~~al~~p-gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~  177 (447)
                      .+++.+++++ ++.|++ +.+|++.+...      ..+..|. .++.++  .+ +++.+|+++++    .  +++|.+++
T Consensus        81 ~~~~~~l~~~~~~~vi~-~g~f~~~~~~~------~~~~~g~~~v~~~~--~~-~g~~~d~~~i~----~--~~~V~~~h  144 (378)
T PRK03080         81 EMALWSLLGARRVDHLA-WESFGSKWATD------VVKQLKLEDPRVLE--AD-YGSLPDLSAVD----F--DRDVVFTW  144 (378)
T ss_pred             HHHHHhcCCCCcceEEE-eCHHHHHHHHH------HHhhcCCCCceEec--cC-CCCCCCHhhcC----C--CCCEEEEe
Confidence            9999999875 455554 44555432100      0012243 334333  43 45678888743    2  56677764


Q ss_pred             CC-CCC-CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhH
Q 013217          178 SA-YPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVEL  254 (447)
Q Consensus       178 ~~-~~~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~  254 (447)
                      .. ..+ ..|+++|++  +++|+++++|++|+.|.++.++.     .+|++++|+||||+||.| |++++++      +.
T Consensus       145 ~~t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G~~pidv~-----~iD~~~~s~~K~l~~P~G~g~l~v~~------~~  211 (378)
T PRK03080        145 NGTTTGVRVPVARWIG--ADREGLTICDATSAAFALPLDWS-----KLDVYTFSWQKVLGGEGGHGMAILSP------RA  211 (378)
T ss_pred             cCCccceeccchhhcc--ccCCCeEEEecccccccCCCCHH-----HCcEEEEehhhhCCCCCceEEEEECH------HH
Confidence            33 333 889999999  88999999999999998765543     379999999999999999 9999998      44


Q ss_pred             HHHhhhc----------------------cCCCCCCCCcHHHHHHHHHHHHHhcCh-hHHHHHHHHHHHHHHHHHHHHHC
Q 013217          255 ESAINNA----------------------VFPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVEL  311 (447)
Q Consensus       255 ~~~i~~~----------------------~~~~~~g~p~~~~~aal~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~  311 (447)
                      .+++...                      ...++.++|+...+.++..+++.+.+. +++...++..+.++++.+.|.+.
T Consensus       212 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~  291 (378)
T PRK03080        212 VERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKT  291 (378)
T ss_pred             HHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC
Confidence            4433321                      011233567777777888899999876 78888999999999999999886


Q ss_pred             C-cEeeeC-CC-CC-eeEEecCCCC--CCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHH
Q 013217          312 G-YKLVSG-GS-DN-HLVLVDLRPM--GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFV  385 (447)
Q Consensus       312 g-~~~~~~-~~-~~-~~~~v~~~~~--~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~  385 (447)
                      + +.++.. .. .+ .++.+.+...  +.+. ++...|.+.||.+..+...    . ..+.+|+|++.+++    ++|++
T Consensus       292 ~~~~~~~~~~~~~s~~i~~~~~~~~~~~~~~-~~~~~l~~~~i~v~~g~~~----~-~~~~vRis~~~~~t----~~di~  361 (378)
T PRK03080        292 PWATPLVADPATRSNTSVTLDFVDAQAAVDA-AAVAKLLRENGAVDIEPYR----D-APNGLRIWCGPTVE----PADVE  361 (378)
T ss_pred             CCcccccCCccccCccEEEEEcCCchHHHHH-HHHHHHHHcCCeecccccc----C-CCCcEEEecCCCCC----HHHHH
Confidence            5 565532 11 12 2233333220  1233 3445555668887543111    1 24589999999998    99999


Q ss_pred             HHHHHHHHHHHHH
Q 013217          386 AIADFIHEGVEIT  398 (447)
Q Consensus       386 ~l~~~i~~~l~~~  398 (447)
                      +++++|++++...
T Consensus       362 ~l~~al~~~~~~~  374 (378)
T PRK03080        362 ALTPWLDWAFERL  374 (378)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987643

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.94  E-value=1.2e-23  Score=208.53  Aligned_cols=337  Identities=15%  Similarity=0.170  Sum_probs=216.6

Q ss_pred             hcCeeEecCCCCC--CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CCCccceeeecCCc
Q 013217           20 FKSLELIASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSG   95 (447)
Q Consensus        20 ~~~i~l~~~~n~~--~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~~~~~v~~~sG   95 (447)
                      .+.++|..+++..  ++.+++++...+...+ .+|.      .......+++...+++.+.+|.  +++    +|.+++|
T Consensus        33 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~------~~~g~~~lr~~ia~~~~~~~g~~~~~~----~i~~t~G  101 (391)
T PRK08361         33 ENVISLGIGEPDFDTPKNIKEAAKRALDEGW-THYT------PNAGIPELREAIAEYYKKFYGVDVDVD----NVIVTAG  101 (391)
T ss_pred             cCeEEcCCCCCCCCCCHHHHHHHHHHHhcCC-CCCC------CCCCcHHHHHHHHHHHHHHhCCCCCcc----cEEEeCC
Confidence            4568888777753  5778888877654421 1221      1122345665555666666664  344    3444676


Q ss_pred             H-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-CCCCCHHHHHHHhhhhCCcEE
Q 013217           96 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLI  173 (447)
Q Consensus        96 s-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~~~~~~~kli  173 (447)
                      + +++..++.++++|||+|++.+|.|.++..        .+...|.  ++++++++++ ++.+|++++++.+++ ++++|
T Consensus       102 ~~~al~~~~~~l~~~g~~Vlv~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~i~~-~~~~v  170 (391)
T PRK08361        102 AYEATYLAFESLLEEGDEVIIPDPAFVCYVE--------DAKIAEA--KPIRIPLREENEFQPDPDELLELITK-RTRMI  170 (391)
T ss_pred             hHHHHHHHHHHhcCCCCEEEEcCCCCcccHH--------HHHHcCC--EEEEEecCCccCCCCCHHHHHHhccc-ccEEE
Confidence            5 89998999999999999999998766532        2334454  5556666643 467999999999987 78999


Q ss_pred             EEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC----CcccEEEeCCCccc--CCCCCceE
Q 013217          174 IAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF----KYCDVVTTTTHKSL--RGPRGGMI  242 (447)
Q Consensus       174 i~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~----~~~Di~~~s~~K~l--~Gp~gG~i  242 (447)
                      +++.++||+  ..+   +++|.++|+++++++++|+++. .+...+....++    ...++++.|++|++  +|.|.|++
T Consensus       171 ~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlRiG~~  249 (391)
T PRK08361        171 VINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYE-HFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTGWRLGFV  249 (391)
T ss_pred             EEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccc-cceeCCCCCCCHhhcCCCCEEEEecCchhcCCcHhhhhhh
Confidence            888788876  667   7888999999999999999963 333222111111    12468899999987  45667999


Q ss_pred             EeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcC-hhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCC
Q 013217          243 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQS-PEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGS  320 (447)
Q Consensus       243 ~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~  320 (447)
                      ++++      ++.+.+........ ++.+.....++..+++.-.. ...++..+++.++++.+.+.|++. |+.+..+ .
T Consensus       250 ~~~~------~~~~~~~~~~~~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p-~  321 (391)
T PRK08361        250 IAPE------QVIKDMIKLHAYII-GNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPHIKVFEP-K  321 (391)
T ss_pred             ccCH------HHHHHHHHHHhhhc-cCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCC-C
Confidence            9987      56665544321111 12222222222334432111 124566777788888889999874 7765543 3


Q ss_pred             CCeeEEecCCCCCCCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          321 DNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       321 ~~~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      .+.++|+.+.+.+++..++.+.| +++||.+..+...   .....+++|+++..  +    +++++...+.|.++++
T Consensus       322 g~~~~~~~l~~~~~~~~~l~~~l~~~~gv~v~pg~~f---~~~~~~~iRi~~~~--~----~~~l~~al~~l~~~l~  389 (391)
T PRK08361        322 GAFYVFANIDETGMSSEDFAEWLLEKARVVVIPGTAF---GKAGEGYIRISYAT--S----KEKLIEAMERMEKALE  389 (391)
T ss_pred             EEEEEEEECCCCCCCHHHHHHHHHHhCCEEEcCchhh---CCCCCCEEEEEecC--C----HHHHHHHHHHHHHHHh
Confidence            45667888865456777787766 5689999643211   11234689999752  3    6677777777776654

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.93  E-value=3.2e-23  Score=205.23  Aligned_cols=339  Identities=14%  Similarity=0.074  Sum_probs=218.3

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCC-ccceeeecCCcH
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDEN-KWGVNVQPLSGS   96 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~-~~~~~v~~~sGs   96 (447)
                      .+.+.|-.+++.  .++.+.+++...+.+.-..+|+.      ......+.+..++++++.+|.+.+ .  .+|.+++|+
T Consensus        27 ~~~~~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~Y~~------~~G~~~lr~~~~~~l~~~~g~~~~~~--~~i~~t~G~   98 (389)
T PRK05957         27 PGTISLGQGVVSYPPPPEAIEALNNFLANPENHKYQA------VQGIPPLLEAITQKLQQDNGIELNNE--QAIVVTAGS   98 (389)
T ss_pred             CCeEEccCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC------CCCCHHHHHHHHHHHHHHhCCCCCCC--CeEEEeCCh
Confidence            455788776663  67889999887664321112322      122234445566788888887421 1  134457777


Q ss_pred             -HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEE
Q 013217           97 -PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIA  175 (447)
Q Consensus        97 -~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~  175 (447)
                       +++..++.++++|||+|++.+|.|..+..        .+...|.  +++.++.+ +++.+|++++++++++ ++|+|++
T Consensus        99 ~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~--------~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~-~~klv~~  166 (389)
T PRK05957         99 NMAFMNAILAITDPGDEIILNTPYYFNHEM--------AITMAGC--QPILVPTD-DNYQLQPEAIEQAITP-KTRAIVT  166 (389)
T ss_pred             HHHHHHHHHHhcCCCCEEEEeCCCCcCHHH--------HHHhcCC--EEEEeecC-CCCCcCHHHHHHhcCc-CceEEEE
Confidence             88888888899999999999988766532        1233454  55555555 4568999999999976 8999999


Q ss_pred             cCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhcccccccc-CCCCC---C--cccEEEeCCCccc--CCCCCceE
Q 013217          176 GASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VADPF---K--YCDVVTTTTHKSL--RGPRGGMI  242 (447)
Q Consensus       176 ~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~~~~---~--~~Di~~~s~~K~l--~Gp~gG~i  242 (447)
                      ++++||+  ..+   +++|.++|+++|+++++|+++ ..+.+.+. ...+.   +  ...+++.|++|.+  +|.|.|++
T Consensus       167 ~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~  245 (389)
T PRK05957        167 ISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAY-EYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYM  245 (389)
T ss_pred             eCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccc-hhccCCCCCccChhhCCCccCcEEEEecchhhccCccceeEEE
Confidence            8888876  555   889999999999999999985 34443321 11111   1  1347889999987  57778999


Q ss_pred             EeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-Cc-EeeeCCC
Q 013217          243 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GY-KLVSGGS  320 (447)
Q Consensus       243 ~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~~~  320 (447)
                      ++++      ++.+++.........+.+...+.++ ..+++.- ...+++..+++.++++.+.+.|++. ++ .+. +..
T Consensus       246 ~~~~------~~~~~~~~~~~~~~~~~~~~~q~~~-~~~l~~~-~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~-~~~  316 (389)
T PRK05957        246 VIPI------HLLEAIKKIQDTILICPPVVSQYAA-LGALQVG-KSYCQQHLPEIAQVRQILLKSLGQLQDRCTLH-PAN  316 (389)
T ss_pred             ecCH------HHHHHHHHHHhhcccCCCcHHHHHH-HHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc-CCC
Confidence            9987      6777776543322223333333322 2234321 1224666777888888899999874 43 333 223


Q ss_pred             CCeeEEecCCCCCCCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          321 DNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       321 ~~~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      .+.++|+.+.. +++..++.+.| +++||.+..+...   .....+++|+++...+     ++++++..+.|.+.++.
T Consensus       317 gg~~~~~~~~~-~~~~~~~~~~l~~~~gv~v~pg~~f---~~~~~~~iRis~~~~~-----~~~l~~~~~~l~~~~~~  385 (389)
T PRK05957        317 GAFYCFLKVNT-DLNDFELVKQLIREYRVAVIPGTTF---GMKNGCYLRIAYGALQ-----KATAKEGIERLVQGLKT  385 (389)
T ss_pred             eeEEEEEeCCC-CCChHHHHHHHHHHCCEEEccchhh---CCCCCCEEEEEEecCC-----HHHHHHHHHHHHHHHHh
Confidence            35667888743 56777777776 5689999543211   1112458999975433     67777777777666653

>PRK06290 aspartate aminotransferase; Provisional

Probab=99.93  E-value=4.5e-23  Score=204.77  Aligned_cols=336  Identities=16%  Similarity=0.077  Sum_probs=222.7

Q ss_pred             cCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC---CCccceeeecCCc
Q 013217           21 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD---ENKWGVNVQPLSG   95 (447)
Q Consensus        21 ~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~---~~~~~~~v~~~sG   95 (447)
                      ..++|..+++.  .++.+.+++...+...-..+||.       .....+.+.+.+++.+.+|.+   +++   +|.+|+|
T Consensus        45 ~~i~L~~g~p~~~~~~~~~~~l~~~~~~~~~~~Y~~-------~G~~~lr~aia~~~~~~~g~~~~~~~~---~I~it~G  114 (410)
T PRK06290         45 ELIDMGVGEPDEMADESVVEVLCEEAKKPENRGYAD-------NGIQEFKEAAARYMEKVFGVKDIDPVT---EVIHSIG  114 (410)
T ss_pred             CeEEcCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC-------CCcHHHHHHHHHHHHHHcCCCcCCCcc---eEEEccC
Confidence            45888888875  46778888766543211123332       112455555566777766754   431   3556999


Q ss_pred             H-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-CCCCCHHHHHHHhhhhCCcEE
Q 013217           96 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLI  173 (447)
Q Consensus        96 s-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~~~~~~~kli  173 (447)
                      + +++..++.++++|||+|++.+|.|.++..        .+...|.  +++.++++++ ++.+|++++++.+.+ ++|+|
T Consensus       115 s~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~--------~~~~~g~--~v~~v~~~~~~~~~~d~~~l~~~~~~-~~k~i  183 (410)
T PRK06290        115 SKPALAMLPSCFINPGDVTLMTVPGYPVTGT--------HTKYYGG--EVYNLPLLEENNFLPDLDSIPKDIKE-KAKLL  183 (410)
T ss_pred             HHHHHHHHHHHhCCCCCEEEEeCCCCccHHH--------HHHHcCC--EEEEEecCCCcCCcCCHHHHHHhhcc-cceEE
Confidence            8 88888999999999999999998766432        2234454  6666667643 467899999988876 89999


Q ss_pred             EEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCC--CC---cccEEEeCCCccc--CCCCCce
Q 013217          174 IAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP--FK---YCDVVTTTTHKSL--RGPRGGM  241 (447)
Q Consensus       174 i~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~--~~---~~Di~~~s~~K~l--~Gp~gG~  241 (447)
                      +++.|+||+  ..+   +++|.++|+++|++|++|+++. .+.+.+...+.  +.   ..++++.|++|.+  +|.|.||
T Consensus       184 ~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~-~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~  262 (410)
T PRK06290        184 YLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYA-ALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAF  262 (410)
T ss_pred             EEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchh-hceeCCCCcChhcCCCccccEEEEeechhhcCCchhheEe
Confidence            999888886  555   5788888999999999999964 33333211111  11   2458999999987  6788899


Q ss_pred             EEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCC
Q 013217          242 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSD  321 (447)
Q Consensus       242 i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~  321 (447)
                      ++.++      ++.+.+.........+++...+. +...++..  ....++..+++.++++.+.+.|++.|+.+..+ ..
T Consensus       263 ii~~~------~l~~~l~~~~~~~~~~~~~~~q~-aa~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p-~g  332 (410)
T PRK06290        263 VVGNE------LIVKAFATVKDNNDSGQFIAIQK-AGIYALDH--PEITEKIREKYSRRLDKLVKILNEVGFKAEMP-GG  332 (410)
T ss_pred             EEeCH------HHHHHHHHHHhccccCCcHHHHH-HHHHHhhC--cHHHHHHHHHHHHHHHHHHHHHHhCCCeecCC-Ce
Confidence            99887      67776665443332333222222 22334432  12245667788888999999999888876543 34


Q ss_pred             CeeEEecCCCCC------CCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          322 NHLVLVDLRPMG------IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       322 ~~~~~v~~~~~~------~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      +.++|+.+++.-      .+..++.+.|.+.|+.+.   .|+..  + .+++||++...+.   ++++.+++.++|++.|
T Consensus       333 ~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~---~p~~~--~-~~~lRi~~~~~~~---~~~~~~~~~~~l~~~~  403 (410)
T PRK06290        333 TFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLIST---VPWDD--A-GHFLRFSVTFEAK---DEEEEDRILEEIKRRL  403 (410)
T ss_pred             eeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEE---ECCcc--c-cCeEEEEEEcccc---cccchhHHHHHHHHHH
Confidence            566777775321      256678787766654432   35432  1 3589998764433   4899999999999888


Q ss_pred             HH
Q 013217          396 EI  397 (447)
Q Consensus       396 ~~  397 (447)
                      ..
T Consensus       404 ~~  405 (410)
T PRK06290        404 SD  405 (410)
T ss_pred             hh
Confidence            64

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.93  E-value=4.1e-23  Score=204.25  Aligned_cols=332  Identities=16%  Similarity=0.121  Sum_probs=215.5

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCc
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSG   95 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sG   95 (447)
                      ++.++|..+++.  .++.+.+++.+.+.+....+|+..   .|   ...+.+.+.+++.+.+|.+  ++.   +|.+++|
T Consensus        29 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~---~G---~~~lr~~ia~~~~~~~~~~~~~~~---~vi~t~G   99 (383)
T TIGR03540        29 VDVISLGIGDPDLPTPKHIVEALCKAAENPENHRYPSY---EG---MLAYRQAVADWYKRRFGVELDPET---EVLSLIG   99 (383)
T ss_pred             CCeEEeCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCC---CC---CHHHHHHHHHHHHHhhCCCCCCCC---eEEECCC
Confidence            466888777664  477888888876643211233321   12   2345555556777777764  321   3455788


Q ss_pred             H-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-CCCCCHHHHHHHhhhhCCcEE
Q 013217           96 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLI  173 (447)
Q Consensus        96 s-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~~~~~~~kli  173 (447)
                      + +++..++.++++|||+|++.+|.|+.+..        .....|.  ++++++++++ ++.+|++++++.+.+ ++++|
T Consensus       100 ~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~--------~~~~~G~--~v~~v~~~~~~g~~~d~~~l~~~~~~-~~~~v  168 (383)
T TIGR03540       100 SKEGIAHIPLAFVNPGDIVLVPDPGYPVYRI--------GTLFAGG--EPYEMPLKEENGFLPDFDAIPEDIAK-KAKLM  168 (383)
T ss_pred             cHHHHHHHHHHhCCCCCEEEEeCCCCcchHH--------HHHhcCC--EEEEEecCcccCCccCHHHHHhhccc-cceEE
Confidence            6 89998999999999999999998776532        2234454  5556666544 456899999988876 89999


Q ss_pred             EEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCC---CC---cccEEEeCCCccc--CCCCCc
Q 013217          174 IAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP---FK---YCDVVTTTTHKSL--RGPRGG  240 (447)
Q Consensus       174 i~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~---~~---~~Di~~~s~~K~l--~Gp~gG  240 (447)
                      +++.|+||+  ..+   +++|.++|+++|+++++|+++. .+.+.+....+   ++   ...+++.|++|++  +|.|.|
T Consensus       169 ~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~-~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG  247 (383)
T TIGR03540       169 FINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYS-EITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIG  247 (383)
T ss_pred             EEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchh-hhccCCCCCcCcccCCCcccCEEEEEecccccCCccceee
Confidence            999788886  555   6889999999999999999964 33332211111   11   1347789999987  477789


Q ss_pred             eEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCC
Q 013217          241 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS  320 (447)
Q Consensus       241 ~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~  320 (447)
                      +++.++      ++.+++.........+. +.....+...++... ....++..+.+.++++.+.+.|++.|+.+..+ .
T Consensus       248 ~~i~~~------~l~~~~~~~~~~~~~~~-~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~-~  318 (383)
T TIGR03540       248 MAVGNA------DLIAGLGKVKTNVDSGV-FQAIQYAAIAALNGP-QDVVKEIRKIYQRRRDLLLEALKKIGIDVEKP-K  318 (383)
T ss_pred             EEeCCH------HHHHHHHHHHHhcccCC-ChHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHhCCCEecCC-C
Confidence            999877      67776655322211222 323333334444432 22346667778888999999999988876643 3


Q ss_pred             CCeeEEecCCCCCCCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217          321 DNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  391 (447)
Q Consensus       321 ~~~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i  391 (447)
                      .+.++|+.+.+ +++..++...| +++||.+..+...+   ....+.+|+++.  .+    ++++++..+.|
T Consensus       319 ~~~~~~~~l~~-~~~~~~~~~~ll~~~gi~v~~g~~f~---~~~~~~~Ris~~--~~----~~~l~~~l~~l  380 (383)
T TIGR03540       319 ATFYVWVPVPE-GYTSAEFAARLLEETGVVVTPGVGFG---EYGEGYIRISLT--VP----DERLEEAVARI  380 (383)
T ss_pred             cceEEEEECCC-CCCHHHHHHHHHHHCCEEEecchhhC---ccCCCeEEEEec--CC----HHHHHHHHHHH
Confidence            46667888753 56677777765 67899996542221   112458999974  22    55655555544

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.93  E-value=4.5e-24  Score=207.60  Aligned_cols=318  Identities=18%  Similarity=0.155  Sum_probs=201.9

Q ss_pred             cCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHH
Q 013217           27 ASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYT  104 (447)
Q Consensus        27 ~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~  104 (447)
                      .|+|+  .|+.+++++.+.....     .  . |+......+++    +++++++| +.+    .+.+++|++++..++.
T Consensus         3 ~~~~~~~~~~~v~~a~~~~~~~~-----~--~-~~~~~~~~~l~----~~~a~~~g-~~~----~~~~~~gt~a~~~~~~   65 (338)
T cd06502           3 RSDTVTGPTPEMLEAMAAANVGD-----D--V-YGEDPTTAKLE----ARAAELFG-KEA----ALFVPSGTAANQLALA   65 (338)
T ss_pred             ccccCCCCCHHHHHHHHhcccCC-----c--c-cCCCHHHHHHH----HHHHHHhC-CCe----EEEecCchHHHHHHHH
Confidence            46665  4789999987654321     1  1 22233344454    68889999 332    4556888899999999


Q ss_pred             HhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhh------hCCcEEEEcCC
Q 013217          105 AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL------FRPKLIIAGAS  178 (447)
Q Consensus       105 al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~------~~~klii~~~~  178 (447)
                      ++++|||+|++.++.|.++.....     .....|.  +++.++.+  ++.+|++++++++++      .+|++|+++++
T Consensus        66 ~l~~~gd~v~~~~~~~~~~~~~~~-----~~~~~g~--~~~~v~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p  136 (338)
T cd06502          66 AHTQPGGSVICHETAHIYTDEAGA-----PEFLSGV--KLLPVPGE--NGKLTPEDLEAAIRPRDDIHFPPPSLVSLENT  136 (338)
T ss_pred             HhcCCCCeEEEecCcceeeecCCc-----HHHHcCc--eEEeecCC--CCcCCHHHHHHHhhccCCCcCCcceEEEEEee
Confidence            999999999999888765432110     1123444  45555554  367999999999874      26899998877


Q ss_pred             CCCC-C---CChHHHHHHHHHhCCEEEEehhhhcccc-ccccCCCCC-CcccEEEeCCCcccCCCCCceEEeecCCcchh
Q 013217          179 AYPR-D---FDYPRMRQIADAVGALLMMDMAHISGLV-AASVVADPF-KYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGV  252 (447)
Q Consensus       179 ~~~~-~---~~~~~i~~ia~~~g~~livD~a~~~g~~-~~~~~~~~~-~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~  252 (447)
                      +|++ .   .++++|.++|+++|+++++|++|..+.. ..+...... .++|+++.|+||++++|.|++++.++      
T Consensus       137 ~n~g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~g~~~~~~~------  210 (338)
T cd06502         137 TEGGTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGGGAPVGAVVVGNR------  210 (338)
T ss_pred             cCCccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcCCEEEEeccccCCCccceEEECCH------
Confidence            7665 3   3567899999999999999999854422 111100111 25789999999999777666566666      


Q ss_pred             hHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCC
Q 013217          253 ELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPM  332 (447)
Q Consensus       253 ~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~  332 (447)
                      ++.+.+.....+. .++.....+.+ ++++..+...++.++.+++.++++++.+.|++.|+.+..  +...++++.+...
T Consensus       211 ~~~~~~~~~~~~~-~~~~~~~~~~~-~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~--~~~~~~~v~~~~~  286 (338)
T cd06502         211 DFIARARRRRKQA-GGGMRQSGFLA-AAGLAALENDLWLRRLRHDHEMARRLAEALEELGGLESE--VQTNIVLLDPVEA  286 (338)
T ss_pred             HHHHHHHHHHHHh-CCChhhHHHHH-HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhcCCCccc--ccCCeEEEecCCc
Confidence            6766665432111 12222222222 122233333346677788999999999999988875433  3345555554321


Q ss_pred             CCCHHHHHHHHh---hcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217          333 GIDGARVEKILD---MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       333 ~~~~~~~~~~L~---~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~  393 (447)
                      ......+.+.|.   +.||.+...         ..+.||++++..++    ++|++++.+++++
T Consensus       287 ~~~~~~l~~~l~~~~~~gi~~~~~---------~~~~lRi~~~~~~~----~~~i~~~~~~l~~  337 (338)
T cd06502         287 NAVFVELSKEAIERRGEGVLFYAW---------GEGGVRFVTHWDTT----EEDVDELLSALKA  337 (338)
T ss_pred             cHHHHHHHHHHHHhhhCCEEEEec---------CCCeEEEEeecCCC----HHHHHHHHHHHhc
Confidence            111122333332   579888542         12589999998888    9999999998864

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PRK07682 hypothetical protein; Validated

Probab=99.93  E-value=2.8e-23  Score=205.06  Aligned_cols=338  Identities=14%  Similarity=0.095  Sum_probs=222.9

Q ss_pred             hcCeeEecCCCCC--CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCc
Q 013217           20 FKSLELIASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSG   95 (447)
Q Consensus        20 ~~~i~l~~~~n~~--~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sG   95 (447)
                      ...|+|..+++..  ++.+.+++...+.+.+ .+|+..      .....+.+.+.+++.+.+|.+  +++   +|.+++|
T Consensus        20 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~~------~g~~~lr~~ia~~~~~~~g~~~~~~~---~i~~t~G   89 (378)
T PRK07682         20 EGVISLGVGEPDFVTPWNVREASIRSLEQGY-TSYTAN------AGLLELRQEIAKYLKKRFAVSYDPND---EIIVTVG   89 (378)
T ss_pred             CCeEEeCCCCCCCCCCHHHHHHHHHHHhcCC-CCCCCC------CCcHHHHHHHHHHHHHHhCCCCCCCC---cEEEeCC
Confidence            4568998888854  5567788776654321 233322      223456555667777776764  321   2445777


Q ss_pred             H-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhhCCcEE
Q 013217           96 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLI  173 (447)
Q Consensus        96 s-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~~~kli  173 (447)
                      + +|+..++.++++|||+|++.+|.|+.+..        .+...|.  ++++++++. +++.+|++++++++.+ ++++|
T Consensus        90 ~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v  158 (378)
T PRK07682         90 ASQALDVAMRAIINPGDEVLIVEPSFVSYAP--------LVTLAGG--VPVPVATTLENEFKVQPAQIEAAITA-KTKAI  158 (378)
T ss_pred             hHHHHHHHHHHhCCCCCEEEEeCCCchhhHH--------HHHHcCC--EEEEeecCCccCCCCCHHHHHhhcCc-ccEEE
Confidence            5 89999999999999999999998765421        2233444  445555543 3568999999998876 89999


Q ss_pred             EEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCC--CC---CcccEEEeCCCccc--CCCCCce
Q 013217          174 IAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PF---KYCDVVTTTTHKSL--RGPRGGM  241 (447)
Q Consensus       174 i~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~--~~---~~~Di~~~s~~K~l--~Gp~gG~  241 (447)
                      +++.++||+  ..   ++++|.++|+++|+++++|+++. .+.+.+...+  .+   ....+++.|++|++  +|.|.|+
T Consensus       159 ~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~  237 (378)
T PRK07682        159 LLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYA-ELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGF  237 (378)
T ss_pred             EEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhh-hcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhh
Confidence            888788886  33   47899999999999999999964 4443321111  01   12358889999997  4777899


Q ss_pred             EEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCC
Q 013217          242 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSD  321 (447)
Q Consensus       242 i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~  321 (447)
                      +++++      ++.+.+.........+.+... ..+...+++.. ....++..+.+.++++.+.+.|.+.|+++..+ ..
T Consensus       238 ~~~~~------~~i~~l~~~~~~~~~~~~~~~-q~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~p-~g  308 (378)
T PRK07682        238 IAAPV------YFSEAMLKIHQYSMMCAPTMA-QFAALEALRAG-NDDVIRMRDSYRKRRNFFVTSFNEIGLTCHVP-GG  308 (378)
T ss_pred             hhcCH------HHHHHHHHHHHhhccCCCHHH-HHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHHCCCccCCC-Ce
Confidence            99987      677766543322222233332 23333345432 12346667778899999999999988876543 34


Q ss_pred             CeeEEecCCCCCCCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          322 NHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       322 ~~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      +++.|+.+.+.+++..++.+.| +++||.+..+...+   +..++++||++..  +    ++++++..+.|+++++.
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~---~~~~~~iRis~~~--~----~~~l~~~l~~l~~~l~~  376 (378)
T PRK07682        309 AFYAFPSISSTGLSSEEFAEQLLLEEKVAVVPGSVFG---ESGEGFIRCSYAT--S----LEQLQEAMKRMKRFVEN  376 (378)
T ss_pred             eEEEEEeccCCCCCHHHHHHHHHHhCCEEEcCchhhC---cCCCCeEEEEeCC--C----HHHHHHHHHHHHHHHhh
Confidence            5667777755456677777665 57899996542221   1124689999752  3    78888888888887753

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.93  E-value=4.5e-23  Score=203.73  Aligned_cols=337  Identities=16%  Similarity=0.148  Sum_probs=215.7

Q ss_pred             hhcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH
Q 013217           19 QFKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS   96 (447)
Q Consensus        19 ~~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs   96 (447)
                      +.+.|+|-.++|.  .++.+++++...+......+|+.      .+....+    ++.+++++|+++++    |..++|+
T Consensus        27 ~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~------~~g~~~l----r~~ia~~l~~~~~~----v~~~~g~   92 (380)
T PRK06225         27 DKEMIWMGQNTNHLGPHEEVREAMIRCIEEGEYCKYPP------PEGFPEL----RELILKDLGLDDDE----ALITAGA   92 (380)
T ss_pred             cCCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCC------CcchHHH----HHHHHHhcCCCCCc----EEEeCCH
Confidence            3466788777774  57899999988776432222322      1222334    46788889998753    3345555


Q ss_pred             -HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC--CCCCCCHHHHHHHhhhhCCcEE
Q 013217           97 -PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE--STGLVDYDMLEKTAILFRPKLI  173 (447)
Q Consensus        97 -~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~id~~~l~~~~~~~~~kli  173 (447)
                       +++..++.+++++||+|++.+|.|..+.        ..+...|.  ++++++++.  +++.+|++++++.+.+ ++++|
T Consensus        93 t~al~~~~~~~~~~gd~vl~~~p~y~~~~--------~~~~~~g~--~~~~v~~~~~~~~~~~d~~~l~~~~~~-~~~~v  161 (380)
T PRK06225         93 TESLYLVMRAFLSPGDNAVTPDPGYLIID--------NFASRFGA--EVIEVPIYSEECNYKLTPELVKENMDE-NTRLI  161 (380)
T ss_pred             HHHHHHHHHHhcCCCCEEEEcCCCCcchH--------HHHHHhCc--eEEeeccccccCCccCCHHHHHhhcCC-CceEE
Confidence             8999999999999999999987765331        12234454  455555532  2468999999999876 89999


Q ss_pred             EEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCC-CcccEEEeCCCcccC--CCCCceEEee
Q 013217          174 IAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-KYCDVVTTTTHKSLR--GPRGGMIFFK  245 (447)
Q Consensus       174 i~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~-~~~Di~~~s~~K~l~--Gp~gG~i~~~  245 (447)
                      ++++++||+  ..   ++++|.++|+++|+++|+|+++. ++.........+ +...+++.|++|+++  |.|.|+++++
T Consensus       162 ~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RiG~i~~~  240 (380)
T PRK06225        162 YLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYR-DFAREHTLAAEYAPEHTVTSYSFSKIFGMAGLRIGAVVAT  240 (380)
T ss_pred             EEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHH-HHhccCCchhhcCCCCEEEEeechhhcCCccceeEEEecC
Confidence            888777775  33   48899999999999999999853 222111000001 124578889999883  5667999998


Q ss_pred             cCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEeeeCCCCCee
Q 013217          246 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGSDNHL  324 (447)
Q Consensus       246 ~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~  324 (447)
                      +      ++.+.+...... ..+ .+....++...++... ....+...+...++.+.+.+.|++ .|+.+...+....+
T Consensus       241 ~------~l~~~~~~~~~~-~~~-~~~~~~~~a~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~  311 (380)
T PRK06225        241 P------DLIEVVKSIVIN-DLG-TNVIAQEAAIAGLKVK-DEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNM  311 (380)
T ss_pred             H------HHHHHHHHHHhc-ccC-CCHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCCCCeE
Confidence            7      677766553221 122 2333333333344332 122234444455667777888877 46433211233556


Q ss_pred             EEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          325 VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       325 ~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      +|+++...+++..++.+.|.++||.+..+...+  .....+++|+++..  +    +++++++++.|++++...
T Consensus       312 ~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~--~~~~~~~iR~s~~~--~----~e~l~~~~~~l~~~~~~~  377 (380)
T PRK06225        312 MVIDISEAGIDPEDLVEYLLERKIFVRQGTYTS--KRFGDRYIRVSFSI--P----REQVEVFCEEFPDVVETL  377 (380)
T ss_pred             EEEEcccccCCHHHHHHHHHHCCEEEcCCcccC--cCCCCceEEEEeCC--C----HHHHHHHHHHHHHHHHHh
Confidence            788876556678889999989999986542111  11234689999642  3    899999999999988744

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.93  E-value=1.4e-23  Score=207.11  Aligned_cols=336  Identities=14%  Similarity=0.090  Sum_probs=216.7

Q ss_pred             cCCCCC----CHHHHHHHhhhhhccCCCCCCCCcc-cCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHH
Q 013217           27 ASENFT----SRAVMEAVGSCLTNKYSEGLPGKRY-YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE  101 (447)
Q Consensus        27 ~~~n~~----~~~v~~a~~~~~~~~~~~g~~~~~~-~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~  101 (447)
                      +|.+|.    .|.++++....+. +|..|+.+.|. |+-.....++|    +++++++|.+.     .+.++||+.++..
T Consensus         4 ~s~dyLgl~~~~~~~~~~~~a~~-~~g~~~~~sr~~yg~~~~~~~LE----~~lA~~~g~e~-----al~~~sG~~a~~~   73 (392)
T PLN03227          4 ATHDFLSTSSSPTLRQTALESLS-HYGCGSCGPRGFYGTIDAHLELE----QCMAEFLGTES-----AILYSDGASTTSS   73 (392)
T ss_pred             cCcCccCCCCCHHHHHHHHHHHH-HhCCCCcccccccCChHHHHHHH----HHHHHHhCCCc-----EEEecCcHHHHHH
Confidence            566665    5888888877664 57777777664 44445566776    68999999875     3456999999999


Q ss_pred             HHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhh----------hCCc
Q 013217          102 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL----------FRPK  171 (447)
Q Consensus       102 ~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~----------~~~k  171 (447)
                      ++.++++|||+|++.++.|++.+.        .+.+.+.  +++.++.+   ..-|++.+.+.+..          .+++
T Consensus        74 ~i~~l~~~GD~Vl~~~~~h~s~~~--------~~~l~~~--~~~~~~~~---d~~~l~~~~~~i~~~~~a~~~~~~~~t~  140 (392)
T PLN03227         74 TVAAFAKRGDLLVVDRGVNEALLV--------GVSLSRA--NVRWFRHN---DMKDLRRVLEQVRAQDVALKRKPTDQRR  140 (392)
T ss_pred             HHHHhCCCCCEEEEeccccHHHHH--------HHHHcCC--eEEEeCCC---CHHHHHHHHHHhhhhccccccccCCCcE
Confidence            999999999999999988877532        1223332  44443332   11233333333321          1577


Q ss_pred             EEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhcccccc---ccC----CCCCCcccEEEeCCCcccCCCCCceE
Q 013217          172 LIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAA---SVV----ADPFKYCDVVTTTTHKSLRGPRGGMI  242 (447)
Q Consensus       172 lii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~---~~~----~~~~~~~Di~~~s~~K~l~Gp~gG~i  242 (447)
                      +|++.++.+++  ..|+++|.++|++||+++++|++|..|....   +..    ..|..++|++++|++|.+ ||.||++
T Consensus       141 ~vi~E~v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~-g~~gg~v  219 (392)
T PLN03227        141 FLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAF-GSVGGMT  219 (392)
T ss_pred             EEEEcCCcCCCCcccCHHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhh-hccCcEE
Confidence            88887554443  7799999999999999999999997664422   110    122336899999999975 6999999


Q ss_pred             EeecCCcchhhHHHHhhhccCCCCCCCC-cHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeC---
Q 013217          243 FFKKDPVLGVELESAINNAVFPGLQGGP-HNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSG---  318 (447)
Q Consensus       243 ~~~~~~~~~~~~~~~i~~~~~~~~~g~p-~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~---  318 (447)
                      ++++      ++.+.+........+++. +....++...++.....  .+++.+++.++.++|++.|++.++..+.+   
T Consensus       220 ~~~~------~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~~--~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~rg  291 (392)
T PLN03227        220 VGSE------EVVDHQRLSGSGYCFSASAPPFLAKADATATAGELA--GPQLLNRLHDSIANLYSTLTNSSHPYALKLRN  291 (392)
T ss_pred             ecCH------HHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhcCCcccccccc
Confidence            8887      666555432222233332 23223333335544332  24568888999999999998755432211   


Q ss_pred             ------CCCCeeEEecCCCCCC--------CHHHHHHHHhhcCeEEccC-CCCCCC-CCCCCCeEEEecCccccCCCCHH
Q 013217          319 ------GSDNHLVLVDLRPMGI--------DGARVEKILDMASITLNKN-SVPGDK-SALVPGGIRIGSPAMTTRGFSEK  382 (447)
Q Consensus       319 ------~~~~~~~~v~~~~~~~--------~~~~~~~~L~~~gI~v~~~-~~p~~~-~~~~~~~iRig~~~~~~~g~~~~  382 (447)
                            .+.++++.+.+.+...        ...++.+.|.++||.+... ..|... ....+..||++++.-+|    ++
T Consensus       292 ~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t----~e  367 (392)
T PLN03227        292 RLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRVVANASHT----RE  367 (392)
T ss_pred             ccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCCCceEEEEecCCCC----HH
Confidence                  1234455455533111        1246778888899988541 111110 11124589999998887    99


Q ss_pred             HHHHHHHHHHHHHHHH
Q 013217          383 EFVAIADFIHEGVEIT  398 (447)
Q Consensus       383 di~~l~~~i~~~l~~~  398 (447)
                      |++++++.|++++...
T Consensus       368 ei~~~~~~l~~~~~~~  383 (392)
T PLN03227        368 DIDKLLTVLGEAVEAI  383 (392)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998754

>PRK07337 aminotransferase; Validated

Probab=99.93  E-value=1.9e-23  Score=207.01  Aligned_cols=337  Identities=13%  Similarity=0.102  Sum_probs=214.7

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CCCccceeeecCCc
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSG   95 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~~~~~v~~~sG   95 (447)
                      ...+.|..+++.  .++.+.+++...+.+. ..+|+.      ......+++...+++.+.+|.  +++    +|..++|
T Consensus        30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~~------~~g~~~lr~~ia~~~~~~~~~~~~~~----~i~~t~G   98 (388)
T PRK07337         30 RDIIHMGIGEPDFTAPEPVVEAAARALRRG-VTQYTS------ALGLAPLREAIAAWYARRFGLDVAPE----RIVVTAG   98 (388)
T ss_pred             CCEEEeCCcCCCCCCCHHHHHHHHHHHhcC-CCCCCC------CCCCHHHHHHHHHHHHHHhCCCCChH----hEEEecC
Confidence            456788777764  4678888888766532 123332      122345555555677666675  444    3445777


Q ss_pred             H-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhhCCcEE
Q 013217           96 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLI  173 (447)
Q Consensus        96 s-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~~~kli  173 (447)
                      + +|+..++.+++++||+|++.+|.|+++..        .+...|.  +++.++++. +++.+|++++++.+.+ ++++|
T Consensus        99 ~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v  167 (388)
T PRK07337         99 ASAALLLACLALVERGDEVLMPDPSYPCNRH--------FVAAAEG--RPVLVPSGPAERFQLTAADVEAAWGE-RTRGV  167 (388)
T ss_pred             cHHHHHHHHHHhcCCCCEEEEeCCCchhhHH--------HHHHcCC--EEEEeecCCccCCcCCHHHHHhhcCc-cceEE
Confidence            6 88888889999999999999999876532        1223344  455555654 3568999999999877 88999


Q ss_pred             EEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-ccc-EEEeCCCccc--CCCCCceEEe
Q 013217          174 IAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCD-VVTTTTHKSL--RGPRGGMIFF  244 (447)
Q Consensus       174 i~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-~~D-i~~~s~~K~l--~Gp~gG~i~~  244 (447)
                      +++.++||+  ..   ++++|.++|+++|+++++|+++ .++.+.+...+... +.+ +++.|++|.+  +|.|.|++++
T Consensus       168 ~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~~~  246 (388)
T PRK07337        168 LLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIY-QGLSYDAAPVSALSLGDDVITINSFSKYFNMTGWRLGWLVV  246 (388)
T ss_pred             EEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccc-cccccCCCCcChhhccCCEEEEEechhhcCCchhheeeeec
Confidence            888788886  44   4688889999999999999985 44443322111111 223 5678999987  5788899999


Q ss_pred             ecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCee
Q 013217          245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHL  324 (447)
Q Consensus       245 ~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~  324 (447)
                      ++      ++.+++.........+.+...+.++ ..++..-....+++..+++.++++.+.+.|++.|+.+...+....+
T Consensus       247 ~~------~l~~~l~~~~~~~~~~~s~~~q~~~-~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p~~g~f  319 (388)
T PRK07337        247 PE------ALVGTFEKLAQNLFICASALAQHAA-LACFEPDTLAIYERRRAEFKRRRDFIVPALESLGFKVPVMPDGAFY  319 (388)
T ss_pred             CH------HHHHHHHHHHHHhccCCChHHHHHH-HHHhccCchHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCeeEE
Confidence            87      6766665543222222223333332 2334311112345667778888888999998887764322245677


Q ss_pred             EEecCCCC----CCCHHHHHH-HHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          325 VLVDLRPM----GIDGARVEK-ILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       325 ~~v~~~~~----~~~~~~~~~-~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                      +|++++..    ..+..++.. .++++||.+..+...+.  ....+++|+++..  .    +++++...+.|.++
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~--~~~~~~~Ri~~~~--~----~~~l~~~l~rl~~~  386 (388)
T PRK07337        320 VYADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGP--HAPRDYIRLSYAT--S----MSRLEEAVARLGKL  386 (388)
T ss_pred             EEEecccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCC--CCCCCEEEEEecC--C----HHHHHHHHHHHHHH
Confidence            88888642    245666654 46789999965422221  1124689999753  2    66766666666554

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.93  E-value=2.3e-23  Score=206.32  Aligned_cols=337  Identities=15%  Similarity=0.098  Sum_probs=216.3

Q ss_pred             hhcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CCCccceeeecCC
Q 013217           19 QFKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLS   94 (447)
Q Consensus        19 ~~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~~~~~v~~~s   94 (447)
                      .++.++|..+++.  .++.+.+++.+.+......+|+..      .....+.+.+.+++.+.+|.  ++++   +|.+|+
T Consensus        29 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~------~G~~~lr~aia~~~~~~~g~~~~~~~---~I~it~   99 (388)
T PRK07366         29 GKELIDLSLGSSDLPAPAHALEAIAQSLHDPSTHGYLLF------HGTLDFREAAAQWYEQRFGLAVDPET---EVLPLI   99 (388)
T ss_pred             CCCeEEeCCCCCCCCCCHHHHHHHHHHHhCcccCCCCCC------CCCHHHHHHHHHHHHHhhCCcCCCcC---eEEECC
Confidence            3566888888874  477888888776543211233221      11234554555677666664  4431   355688


Q ss_pred             cH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-CCCCCHHHHHHHhhhhCCcE
Q 013217           95 GS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKL  172 (447)
Q Consensus        95 Gs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~~~~~~~kl  172 (447)
                      |+ +++..++.++++|||+|++.+|.|.++..        .+...|.  ++++++++++ .+.+|++++++.+.. ++|+
T Consensus       100 Gs~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~~~~-~~k~  168 (388)
T PRK07366        100 GSQEGTAHLPLAVLNPGDFALLLDPGYPSHAG--------GVYLAGG--QIYPMPLRAENDFLPVFADIPTEVLA-QARL  168 (388)
T ss_pred             CcHHHHHHHHHHhCCCCCEEEEcCCCCcchHH--------HHHhcCC--EEEEEECCCccCCCCCHHHHHHhhcc-cceE
Confidence            87 89999999999999999999998876532        2334554  5556666643 467899999887766 7999


Q ss_pred             EEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccC--CCCC--C-c--ccEEEeCCCccc--CCCC
Q 013217          173 IIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPF--K-Y--CDVVTTTTHKSL--RGPR  238 (447)
Q Consensus       173 ii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~--~~~~--~-~--~Di~~~s~~K~l--~Gp~  238 (447)
                      |+++.++||+  ..+   +++|.++|+++|+++|+|+++ ..+.+.+..  ++..  . .  .-+++.|++|++  +|.|
T Consensus       169 i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y-~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlR  247 (388)
T PRK07366        169 MVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPY-VDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFR  247 (388)
T ss_pred             EEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecch-hhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcchh
Confidence            9998888986  444   567788999999999999985 444433221  1111  1 1  236789999986  6889


Q ss_pred             CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeC
Q 013217          239 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSG  318 (447)
Q Consensus       239 gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~  318 (447)
                      .||++.++      ++.+.+.....+...+++.....++ ..++.. ....+++..+.+.++++.+.+.|++.|+.+..+
T Consensus       248 iG~~v~~~------~li~~l~~~~~~~~~~~~~~~~~~a-~~~l~~-~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~p  319 (388)
T PRK07366        248 IGFAIGNA------QLIQALRQVKAVVDFNQYRGILNGA-IAALTG-PQATVQQTVQIFRQRRDAFINALHQIGWPVPLP  319 (388)
T ss_pred             heehcCCH------HHHHHHHHHHhhcccCCCHHHHHHH-HHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC
Confidence            99999887      6777776543322222222222222 224422 122346677888888889999998888765433


Q ss_pred             CCCCeeEEecCCCC-CCCHHHHHHH-HhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          319 GSDNHLVLVDLRPM-GIDGARVEKI-LDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       319 ~~~~~~~~v~~~~~-~~~~~~~~~~-L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                       ....++|+++... ..+..++.+. ++++||.+..+...+   ....+++||++.  .+    ++++++..+.|.+.
T Consensus       320 -~~g~f~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~---~~~~~~iRi~~~--~~----~~~l~~~l~rl~~~  387 (388)
T PRK07366        320 -EATMYVWAKLPEPWQGNSVEFCTQLVAQTGVAASPGSGFG---KSGEGYVRFALV--HD----PDILEEAVERIAAF  387 (388)
T ss_pred             -CeeEEEEEECCcccCCCHHHHHHHHHHhCCEEEeCchHhC---cCCCCeEEEEec--CC----HHHHHHHHHHHHHh
Confidence             3467778887642 1234566554 478899996532221   112468999864  23    67777777776553

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.93  E-value=1.6e-23  Score=208.32  Aligned_cols=329  Identities=21%  Similarity=0.228  Sum_probs=218.2

Q ss_pred             EecCCCCC----CHHHHHHHhhhhhccCCCCCCCCccc-CchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHH
Q 013217           25 LIASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYY-GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN   99 (447)
Q Consensus        25 l~~~~n~~----~~~v~~a~~~~~~~~~~~g~~~~~~~-~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~   99 (447)
                      ...|.+|.    +|.|++++...+. +|..+..++|.. +..+...++|    +.+++++|.+.     .+.++||++||
T Consensus        49 ~~~sn~ylgl~~~p~v~~a~~~~~~-~~~~~~~~s~~~~g~~~~~~~Le----~~la~~~g~~~-----~l~~~sG~~an  118 (402)
T TIGR01821        49 VWCSNDYLGMGQHPEVLQAMHETLD-KYGAGAGGTRNISGTNIPHVELE----AELADLHGKES-----ALVFTSGYVAN  118 (402)
T ss_pred             EeEccCcCCCCCCHHHHHHHHHHHH-HcCCCCcchhhhhCCcHHHHHHH----HHHHHHhCCCe-----EEEECchHHHH
Confidence            45677776    6899999988775 455555555533 2344445565    67889999653     35569999999


Q ss_pred             HHHHHHhcC--CCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhh---hCCcEEE
Q 013217          100 FEVYTAILK--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---FRPKLII  174 (447)
Q Consensus       100 ~~~~~al~~--pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~---~~~klii  174 (447)
                      ..++..+.+  +||.|+.....|++...        .+...|.  .+..++      ..|+++++++++.   .++++|+
T Consensus       119 ~~ai~~l~~~~~~~~v~~~~~~h~s~~~--------~~~~~g~--~~~~~~------~~d~~~l~~~l~~~~~~~~~~v~  182 (402)
T TIGR01821       119 DATLATLAKIIPGCVIFSDELNHASMIE--------GIRHSGA--EKFIFR------HNDVAHLEKLLQSVDPNRPKIIA  182 (402)
T ss_pred             HHHHHHhhCCCCCCEEEEcchHhHHHHH--------HHHHcCC--eEEEEC------CCCHHHHHHHHHhccCCCCeEEE
Confidence            999988765  78888776656654432        1223333  222222      2477888887763   2578888


Q ss_pred             EcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhcccccc---ccCC-CCC-CcccEEEeCCCcccCCCCCceEEeecC
Q 013217          175 AGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAA---SVVA-DPF-KYCDVVTTTTHKSLRGPRGGMIFFKKD  247 (447)
Q Consensus       175 ~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~---~~~~-~~~-~~~Di~~~s~~K~l~Gp~gG~i~~~~~  247 (447)
                      ++++++++  ..|+++|.++|+++|+++++|++|+.|....   +... ..+ ...|+++.|++|.++ ..||++++++ 
T Consensus       183 ~e~~~~~~G~~~~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g-~~GG~i~~~~-  260 (402)
T TIGR01821       183 FESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFG-VVGGYIAASR-  260 (402)
T ss_pred             EcCCCCCCCCccCHHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhc-cCCceeecCH-
Confidence            88666553  7799999999999999999999998775422   1111 111 136899999999985 4568888877 


Q ss_pred             CcchhhHHHHhhhccCCC-CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEE
Q 013217          248 PVLGVELESAINNAVFPG-LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVL  326 (447)
Q Consensus       248 ~~~~~~~~~~i~~~~~~~-~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~  326 (447)
                           ++.+.+.....+. +.++.+...+++..++++.+...  ....++..++++++.+.|++.|++++.+  .++++.
T Consensus       261 -----~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~~~i~~  331 (402)
T TIGR01821       261 -----KLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKES--QDLRRAHQENVKRLKNLLEALGIPVIPN--PSHIVP  331 (402)
T ss_pred             -----HHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHHHHHcCCCcCCC--CCCEEE
Confidence                 6766665432222 12334444555555678766543  4455666788999999999888876643  344444


Q ss_pred             ecCCCCCCCHHHHHHHHh-hcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          327 VDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       327 v~~~~~~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      +.+... ....++.+.|. ++||.++....|..  +....++|++++..++    ++|++++.++|+++++.
T Consensus       332 i~~~~~-~~a~~~~~~L~~~~Gi~v~~~~~p~~--~~g~~~lRis~~~~~t----~edi~~~~~~l~~~~~~  396 (402)
T TIGR01821       332 VIIGDA-ALCKKVSDLLLNKHGIYVQPINYPTV--PRGTERLRITPTPAHT----DKMIDDLVEALLLVWDR  396 (402)
T ss_pred             EEeCCH-HHHHHHHHHHHhcCCEEEEeECCCCC--CCCCceEEEEeCCCCC----HHHHHHHHHHHHHHHHH
Confidence            443211 12456777764 67999976433321  2224589999999888    99999999999988764

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.93  E-value=1.3e-23  Score=209.54  Aligned_cols=329  Identities=18%  Similarity=0.177  Sum_probs=217.0

Q ss_pred             EecCCCCC----CHHHHHHHhhhhhccCCCCCCCCcccCc-hhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHH
Q 013217           25 LIASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN   99 (447)
Q Consensus        25 l~~~~n~~----~~~v~~a~~~~~~~~~~~g~~~~~~~~g-~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~   99 (447)
                      ...|.+|.    +|.+++++...+. +|..+..+.|.+.+ .+...++|    +++++++|.+.     .+.++||++||
T Consensus        50 ~~~sn~yl~l~~~p~v~~a~~~~~~-~~~~~~~~s~~~~~~~~~~~~Le----~~la~~~g~~~-----~i~~~sG~~a~  119 (410)
T PRK13392         50 IWCSNDYLGMGQHPDVIGAMVDALD-RYGAGAGGTRNISGTSHPHVLLE----RELADLHGKES-----ALLFTSGYVSN  119 (410)
T ss_pred             EEECCCccCCCCCHHHHHHHHHHHH-HcCCCCchhhhcccChHHHHHHH----HHHHHHhCCCC-----EEEECcHHHHH
Confidence            34566664    6899999987664 45444444443333 23345565    67899999753     35569999999


Q ss_pred             HHHHHHhc--CCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhh---hCCcEEE
Q 013217          100 FEVYTAIL--KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---FRPKLII  174 (447)
Q Consensus       100 ~~~~~al~--~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~---~~~klii  174 (447)
                      ..++..+.  .|||.|++..+.|++.+.        .+...|..+  ..++.      .|++++++.+..   .++++|+
T Consensus       120 ~~~i~~l~~~~~g~~vi~~~~~h~s~~~--------~~~~~g~~~--~~~~~------~d~~~l~~~l~~~~~~~t~~v~  183 (410)
T PRK13392        120 DAALSTLGKLLPGCVILSDALNHASMIE--------GIRRSGAEK--QVFRH------NDLADLEEQLASVDPDRPKLIA  183 (410)
T ss_pred             HHHHHHHhcCCCCCEEEEehhhhHHHHH--------HHHHcCCeE--EEEeC------CCHHHHHHHHHhccCCCCEEEE
Confidence            98888775  489988887666665431        223445432  22221      255566655542   3788999


Q ss_pred             EcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhcccccc---ccC--CCCCCcccEEEeCCCcccCCCCCceEEeecC
Q 013217          175 AGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAA---SVV--ADPFKYCDVVTTTTHKSLRGPRGGMIFFKKD  247 (447)
Q Consensus       175 ~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~---~~~--~~~~~~~Di~~~s~~K~l~Gp~gG~i~~~~~  247 (447)
                      ++++++++  ..|+++|.++|+++|+++++|++|+.|....   +..  ....+..|+++.|++|++++ .||++++++ 
T Consensus       184 i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~-~GG~~~~~~-  261 (410)
T PRK13392        184 FESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGC-LGGYIAASA-  261 (410)
T ss_pred             EeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhc-ccchhhcCH-
Confidence            88777664  7899999999999999999999998776422   110  01112468999999999865 468888776 


Q ss_pred             CcchhhHHHHhhhccCCCC-CCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEE
Q 013217          248 PVLGVELESAINNAVFPGL-QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVL  326 (447)
Q Consensus       248 ~~~~~~~~~~i~~~~~~~~-~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~  326 (447)
                           ++.+.+.....+.. .++.+....++..++++.....  ....+++.++++++.+.|.+.|+++..+  +++++.
T Consensus       262 -----~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~~~~~~  332 (410)
T PRK13392        262 -----DLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKTS--QTERDAHQDRVAALKAKLNANGIPVMPS--PSHIVP  332 (410)
T ss_pred             -----HHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHcCCCCCCC--CCCEEE
Confidence                 67776655433322 2223334455666678765432  3445778889999999999888876542  344444


Q ss_pred             ecCCCCCCCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          327 VDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       327 v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      +.+.. ..+..++.+.| +++||.++....|..  +....++|++++..++    ++|+++++++|+++++.
T Consensus       333 i~~~~-~~~~~~~~~~L~~~~GI~v~~~~~p~~--~~~~~~lRis~~~~~t----~edid~l~~aL~~~~~~  397 (410)
T PRK13392        333 VMVGD-PTLCKAISDRLMSEHGIYIQPINYPTV--PRGTERLRITPTPLHD----DEDIDALVAALVAIWDR  397 (410)
T ss_pred             EEeCC-HHHHHHHHHHHHHhCCEEEeeeCCCCC--CCCCceEEEEECCCCC----HHHHHHHHHHHHHHHHH
Confidence            44321 11345677766 578999976433321  2234689999998888    99999999999988764

>PRK09082 methionine aminotransferase; Validated

Probab=99.93  E-value=1.4e-23  Score=207.72  Aligned_cols=337  Identities=14%  Similarity=0.113  Sum_probs=220.1

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-   96 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-   96 (447)
                      ...++|..+++.  .++.+.+++.+.+...+ .+|+..      .....+++...+++.+++|.+.+.- .+|.+++|+ 
T Consensus        30 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~-~~Y~~~------~G~~~lr~~~a~~l~~~~~~~~~~~-~~i~~t~G~~  101 (386)
T PRK09082         30 HGAINLSQGFPDFDGPPYLVEALAYAMAAGH-NQYPPM------TGVAALREAIAAKTARLYGRQYDAD-SEITVTAGAT  101 (386)
T ss_pred             CCEEEecCCCCCCCCCHHHHHHHHHHHHcCC-CCCCCC------CCcHHHHHHHHHHHHHHhCCCCCCC-CcEEEeCCHH
Confidence            345788766553  35788888887665321 233322      2234555556678888888753210 134457775 


Q ss_pred             HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 013217           97 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG  176 (447)
Q Consensus        97 ~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~  176 (447)
                      +|+..++.++++|||+|++.+|.|+++..        .+...|.  +++.++++.+++.+|++++++.+++ ++++|+++
T Consensus       102 ~al~~~~~~~~~~gd~Vli~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~l~  170 (386)
T PRK09082        102 EALFAAILALVRPGDEVIVFDPSYDSYAP--------AIELAGG--RAVRVALQPPDFRVDWQRFAAAISP-RTRLIILN  170 (386)
T ss_pred             HHHHHHHHHHcCCCCEEEEeCCCchhhHH--------HHHHcCC--EEEEEecCcccccCCHHHHHHhcCc-cceEEEEe
Confidence            89999999999999999999998876532        2334454  5666667655678999999999977 89999998


Q ss_pred             CCCCCC--C---CChHHHHHHHHHhCCEEEEehhhhcccccccc-CCCCC-----CcccEEEeCCCccc--CCCCCceEE
Q 013217          177 ASAYPR--D---FDYPRMRQIADAVGALLMMDMAHISGLVAASV-VADPF-----KYCDVVTTTTHKSL--RGPRGGMIF  243 (447)
Q Consensus       177 ~~~~~~--~---~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~~~~-----~~~Di~~~s~~K~l--~Gp~gG~i~  243 (447)
                      .++||+  .   .++++|.++|+++|+++|+|+++ ..+.+.+. .++..     ....+++.|++|.+  +|.|.|+++
T Consensus       171 ~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y-~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv  249 (386)
T PRK09082        171 TPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVY-EHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCV  249 (386)
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhh-hhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhhhhhh
Confidence            777775  3   36789999999999999999996 33333221 11111     12458889999987  578889999


Q ss_pred             eecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCe
Q 013217          244 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNH  323 (447)
Q Consensus       244 ~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~  323 (447)
                      +++      ++.+.+.........+.+...+ .+++..+.. .....++..+.+.++++.+.+.|.+.|+++..+ ..++
T Consensus       250 ~~~------~l~~~~~~~~~~~~~~~~~~~q-~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~-~g~~  320 (386)
T PRK09082        250 APA------ALSAEFRKVHQYNTFTVNTPAQ-LALADYLRA-EPEHYLELPAFYQAKRDRFRAALANSRFKLLPC-EGTY  320 (386)
T ss_pred             CCH------HHHHHHHHHHhhhcCCCChHHH-HHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-CeeE
Confidence            987      6766665543211122222222 233333432 123346667778889999999999888876543 3466


Q ss_pred             eEEecCCC-CCCCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHH
Q 013217          324 LVLVDLRP-MGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH  392 (447)
Q Consensus       324 ~~~v~~~~-~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~  392 (447)
                      ++|++++. .+.+..++.+.| +++||.+..+...+. .+...+++|+++..  .    ++++++..+.|.
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~v~pg~~f~~-~~~~~~~~Ri~~~~--~----~~~l~~~~~rl~  384 (386)
T PRK09082        321 FQLVDYSAISDLDDVEFCQWLTREHGVAAIPLSVFYA-DPFPHRLVRLCFAK--Q----EETLDAAAERLC  384 (386)
T ss_pred             EEEEeccccCCCCHHHHHHHHHHhCCEEEeCcHHhCC-CCCCCCEEEEEecC--C----HHHHHHHHHHHh
Confidence            77888753 245677787764 789999965432111 12234689999753  3    677777666664

>PLN02721 threonine aldolase

Probab=99.93  E-value=1.8e-23  Score=204.56  Aligned_cols=325  Identities=17%  Similarity=0.149  Sum_probs=204.2

Q ss_pred             eeEecCCC-CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHH
Q 013217           23 LELIASEN-FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE  101 (447)
Q Consensus        23 i~l~~~~n-~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~  101 (447)
                      ++|..+++ +.++.+++++......      ....+|.  ...+++|    +.+++++|.+.     .+.+++|++++..
T Consensus         8 ~~~~~~~~~~~~~~~~~a~~~~~~~------~~~~~~~--~~~~~l~----~~la~~~~~~~-----~~~~~~Gs~a~~~   70 (353)
T PLN02721          8 VDLRSDTVTKPTDAMRAAMANAEVD------DDVLGYD--PTALRLE----EEMAKIFGKEA-----ALFVPSGTMGNLI   70 (353)
T ss_pred             hhhhcccccCCCHHHHHHHHhccCC------CcccCCC--HHHHHHH----HHHHHHhCCce-----eEEecCccHHHHH
Confidence            45555555 3568888887642111      1112222  2245565    57888999875     2345789988888


Q ss_pred             HHHHhcC-CCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhh------hCCcEEE
Q 013217          102 VYTAILK-PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL------FRPKLII  174 (447)
Q Consensus       102 ~~~al~~-pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~------~~~klii  174 (447)
                      ++.++++ |||+|++.++.|.+.+..+     ......|.  +++.++.+ +++.+|++++++.+++      .++++|+
T Consensus        71 ~l~~~~~~~gd~Vl~~~~~~~~~~~~~-----~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~  142 (353)
T PLN02721         71 SVLVHCDVRGSEVILGDNSHIHLYENG-----GISTLGGV--HPRTVKNN-EDGTMDLDAIEAAIRPKGDDHFPTTRLIC  142 (353)
T ss_pred             HHHHHccCCCCeEEEcCccceehhccc-----chhhhcCc--eeEecCCC-cCCCcCHHHHHHHHHhccCCCCCcceEEE
Confidence            8888877 9999999988764332110     01223343  55555555 4577999999999973      2789988


Q ss_pred             EcC-CCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccc-cccCCCC-CCcccEEEeCCCcccCCCCCceEEeec
Q 013217          175 AGA-SAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVA-ASVVADP-FKYCDVVTTTTHKSLRGPRGGMIFFKK  246 (447)
Q Consensus       175 ~~~-~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~-~~~~~~~-~~~~Di~~~s~~K~l~Gp~gG~i~~~~  246 (447)
                      +++ +++|+  ..|   +++|.++|+++|+++++|++|..+... .+..+.. ..++|.++.|+||++++|.||+++.++
T Consensus       143 l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G~~~~~~~  222 (353)
T PLN02721        143 LENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVKAADSVSVCLSKGLGAPVGSVIVGSK  222 (353)
T ss_pred             EeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhhhCCEEEEecccccCCceeeEEecCH
Confidence            864 45554  444   689999999999999999998654321 1211111 125788899999999888776666665


Q ss_pred             CCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEe-eeCCCCCee
Q 013217          247 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKL-VSGGSDNHL  324 (447)
Q Consensus       247 ~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~  324 (447)
                            ++.+.+...... ..+++......+. .++..+.  ...+..++..++++.+.+.|++. ++.+ +.+ ...++
T Consensus       223 ------~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~l~--~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~  291 (353)
T PLN02721        223 ------SFIRKAKRLRKT-LGGGMRQVGVLAA-AALVALQ--ENVPKLEDDHKKAKLLAEGLNQIKGLRVNVAA-VETNI  291 (353)
T ss_pred             ------HHHHhHHHHHHh-cCCCeehhHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHhCCCcEEecCC-ccceE
Confidence                  666654432211 1122222111111 1121111  12223455567788999999885 7755 333 33456


Q ss_pred             EEecCCCC-CCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          325 VLVDLRPM-GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       325 ~~v~~~~~-~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      +++.+... +.+...+.+.|.++||.+...         ...++|++++..++    ++|+++++++|++++.
T Consensus       292 ~~~~~~~~~~~~~~~~~~~L~~~gi~v~~~---------~~~~lR~~~~~~~~----~~~i~~~~~~l~~~~~  351 (353)
T PLN02721        292 VYFDITDGSRITAEKLCKSLEEHGVLLMPG---------NSSRIRVVTHHQIS----DSDVQYTLSCFQQAAL  351 (353)
T ss_pred             EEEEccCCccccHHHHHHHHHhCCcEEecC---------CCceEEEEecCcCC----HHHHHHHHHHHHHHhh
Confidence            67776431 146778999999999999642         24589999876666    9999999999988764

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.93  E-value=1.1e-22  Score=201.73  Aligned_cols=319  Identities=15%  Similarity=0.160  Sum_probs=203.0

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCc
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSG   95 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sG   95 (447)
                      ++.++|..+...  .|+.+++++...+.+....+|+.      ......+++...+++.+.+|.+  ++.   .+.+|+|
T Consensus        35 ~~~i~l~~g~p~~~~p~~~~~~~~~~~~~~~~~~Y~~------~~G~~~lr~aia~~~~~~~~~~~~~~~---~i~vt~G  105 (394)
T PRK05942         35 LDLIDLGMGNPDGAAPQPVIEAAIAALADPQNHGYPP------FEGTASFRQAITDWYHRRYGVELDPDS---EALPLLG  105 (394)
T ss_pred             CCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCCccCCC------CCCCHHHHHHHHHHHHHHHCCCcCCCC---eEEEccC
Confidence            455777644332  35567777665553321123332      2223456555556777766753  431   2445778


Q ss_pred             H-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-CCCCCHHHHHHHhhhhCCcEE
Q 013217           96 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLI  173 (447)
Q Consensus        96 s-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~~~~~~~kli  173 (447)
                      + +++..++.++++|||+|++.+|.|+++..        .+...|.  ++++++++++ ++.+|++++++.+.+ ++|+|
T Consensus       106 ~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~~~~-~~k~i  174 (394)
T PRK05942        106 SKEGLTHLALAYVNPGDVVLVPSPAYPAHFR--------GPLIAGA--QIYPIILKPENDWLIDLSSIPEEVAQ-QAKIL  174 (394)
T ss_pred             hHHHHHHHHHHhCCCCCEEEEcCCCCcchHH--------HHHHcCC--EEEEeecCCccCCccCHHHHHHhccc-cceEE
Confidence            6 89988999999999999999999877532        1223454  5556666543 457999999998876 89999


Q ss_pred             EEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCC---C---CcccEEEeCCCccc--CCCCCc
Q 013217          174 IAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP---F---KYCDVVTTTTHKSL--RGPRGG  240 (447)
Q Consensus       174 i~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~---~---~~~Di~~~s~~K~l--~Gp~gG  240 (447)
                      ++++|+||+  ..+   +++|.++|+++|+++|+|+++. .+.+.+....+   +   ....+++.|++|.+  +|.|.|
T Consensus       175 ~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~-~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG  253 (394)
T PRK05942        175 YFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYA-ELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVG  253 (394)
T ss_pred             EEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccch-hhccCCCCCCChhhCCCccccEEEEecchhccCChhhhee
Confidence            999788886  555   6788899999999999999964 33332211111   1   12347789999976  577789


Q ss_pred             eEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCC
Q 013217          241 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS  320 (447)
Q Consensus       241 ~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~  320 (447)
                      +++.++      ++.+.+.........+. +.....++..+++.. ....++..+++.++++.+.+.|.+.|+.+..+ .
T Consensus       254 ~i~~~~------~l~~~l~~~~~~~~~~~-~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~-~  324 (394)
T PRK05942        254 FVVGNR------HIIQGLRTLKTNLDYGI-FSALQKAAETALQLP-DSYLQQVQERYRTRRDFLIQGLGELGWNIPPT-K  324 (394)
T ss_pred             eeecCH------HHHHHHHHHHhhcccCC-CHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHCCCeecCC-C
Confidence            999887      67777765432111122 222233334455422 22345667777888888999998888876543 3


Q ss_pred             CCeeEEecCCCCCCCHHHHH-HHHhhcCeEEccCCCCCCCCCCCCCeEEEecC
Q 013217          321 DNHLVLVDLRPMGIDGARVE-KILDMASITLNKNSVPGDKSALVPGGIRIGSP  372 (447)
Q Consensus       321 ~~~~~~v~~~~~~~~~~~~~-~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~  372 (447)
                      .+.++|+++.. +++..++. +.|+++||.+..+...+   ....+++|+++.
T Consensus       325 ~~~f~~~~~~~-~~~~~~~~~~~l~~~gV~v~~g~~f~---~~~~~~iRis~~  373 (394)
T PRK05942        325 ATMYLWVPCPV-GMGSTDFALNVLQKTGVVVTPGNAFG---EGGEGYVRISLI  373 (394)
T ss_pred             eeeEEEEECCC-CCCHHHHHHHHHHHCCEEEeCChhhC---cCCCCeEEEEec
Confidence            45567888753 34555555 46678999995432211   112468999974

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.93  E-value=2.7e-23  Score=204.17  Aligned_cols=328  Identities=16%  Similarity=0.146  Sum_probs=226.6

Q ss_pred             CeeEecCCCCC----CHHHHHHHhhhhhccCCCCCCCCcccCch-hHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH
Q 013217           22 SLELIASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGGN-EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS   96 (447)
Q Consensus        22 ~i~l~~~~n~~----~~~v~~a~~~~~~~~~~~g~~~~~~~~g~-~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs   96 (447)
                      .+....|.+|+    .|+++++....+ .+|..|..++|...|. ....++|    +.+++++|.+.     .+..+||.
T Consensus       103 ~~l~FsSndYLGL~~~p~v~~a~~~ai-~~yG~g~~gSrl~~G~~~~h~~LE----~~LA~f~g~e~-----all~sSGy  172 (476)
T PLN02955        103 KLLLFSGNDYLGLSSHPTISNAAANAA-KEYGMGPKGSALICGYTTYHRLLE----SSLADLKKKED-----CLVCPTGF  172 (476)
T ss_pred             eEEEeeccCccCCCCCHHHHHHHHHHH-HHcCCCCCCcCccccChHHHHHHH----HHHHHHHCCCc-----EEEECChH
Confidence            34456899987    688999887765 4688888888766554 5556677    68999999986     34569999


Q ss_pred             HHHHHHHHHhc--------------CCCCEEEEecCCCCcccCCCccccccccccccc--eeEEEecccCCCCCCCCHHH
Q 013217           97 PANFEVYTAIL--------------KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI--YFESMPYRLDESTGLVDYDM  160 (447)
Q Consensus        97 ~a~~~~~~al~--------------~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~id~~~  160 (447)
                      .||..++.++.              +++|.|+.....|.+.+.        .+.++..  ..+++.++      ..|+++
T Consensus       173 ~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~d--------G~~ls~~~~~a~~~~f~------HND~~~  238 (476)
T PLN02955        173 AANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIID--------GVRLAERQGNVEVFVYR------HCDMYH  238 (476)
T ss_pred             HHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHH--------HHHhccccCCceEEEeC------CCCHHH
Confidence            99999998872              466788887777766532        2222211  12444444      358999


Q ss_pred             HHHHhhhhC--CcEEEEc--CCCCCCCCChHHHHHHHHHhCCEEEEehhhhcccccc---ccCC-CCC-CcccEEEeCCC
Q 013217          161 LEKTAILFR--PKLIIAG--ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA---SVVA-DPF-KYCDVVTTTTH  231 (447)
Q Consensus       161 l~~~~~~~~--~klii~~--~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~---~~~~-~~~-~~~Di~~~s~~  231 (447)
                      |+++++..+  .++|++.  .+..+...|+++|.++|++||+++++|++|+.|.+..   |... ..+ +..|++++|++
T Consensus       239 Le~~L~~~~~~~~~Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLs  318 (476)
T PLN02955        239 LNSLLSSCKMKRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLS  318 (476)
T ss_pred             HHHHHHhCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCc
Confidence            998886532  3455554  2233337799999999999999999999998886644   1111 111 24789999999


Q ss_pred             cccCCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcH-HHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH
Q 013217          232 KSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHN-HTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE  310 (447)
Q Consensus       232 K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~-~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~  310 (447)
                      |.+ |.+||++++++      ++.+.+.....+...++... ...++..++++.+...  ..+++++.+|.+++.+.   
T Consensus       319 KA~-G~~GGfi~gs~------~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~~--~~~r~~L~~n~~~fr~~---  386 (476)
T PLN02955        319 KAA-GCHGGFIACSK------KWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARKE--KWRRKAIWERVKEFKAL---  386 (476)
T ss_pred             cch-hccCceeecHH------HHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHh---
Confidence            986 67899999988      67777765444444444443 3444555577766443  34678888888888873   


Q ss_pred             CCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHH
Q 013217          311 LGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADF  390 (447)
Q Consensus       311 ~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~  390 (447)
                      .|+.+     .++++.+-+... .....+.+.|.++||.++....|..  |....++||+.++.++    ++|+++++++
T Consensus       387 ~G~~~-----~sPI~pI~ig~~-~~a~~~~~~L~~~Gi~v~~i~yPtV--P~g~~rLRi~lsA~Ht----~edId~lv~~  454 (476)
T PLN02955        387 SGVDI-----SSPIISLVVGNQ-EKALKASRYLLKSGFHVMAIRPPTV--PPNSCRLRVTLSAAHT----TEDVKKLITA  454 (476)
T ss_pred             cCCCC-----CCCEEEEEeCCH-HHHHHHHHHHHHCCCEEEEECCCCC--CCCCceEEEeeCCCCC----HHHHHHHHHH
Confidence            36643     245555544432 2345678899999999986544432  3445689999999888    9999999999


Q ss_pred             HHHHHHH
Q 013217          391 IHEGVEI  397 (447)
Q Consensus       391 i~~~l~~  397 (447)
                      |.++...
T Consensus       455 L~~~~~~  461 (476)
T PLN02955        455 LSSCLDF  461 (476)
T ss_pred             HHHHHhh
Confidence            9887654

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.93  E-value=5.1e-23  Score=205.18  Aligned_cols=330  Identities=19%  Similarity=0.212  Sum_probs=217.1

Q ss_pred             eEecCCCCC----CHHHHHHHhhhhhccCCCCCCCCccc-CchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHH
Q 013217           24 ELIASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYY-GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA   98 (447)
Q Consensus        24 ~l~~~~n~~----~~~v~~a~~~~~~~~~~~g~~~~~~~-~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a   98 (447)
                      ....|.||+    +|.|.+++...+. +|..+..+.|.+ +..+...++|    +.+++++|.+.     .+.++||++|
T Consensus        49 ~~~~s~dylgl~~~p~v~~a~~~~~~-~~~~~~~~s~~~~g~~~~~~~l~----~~la~~~g~~~-----~~~~~sG~~a  118 (407)
T PRK09064         49 TVWCSNDYLGMGQHPKVIEAMIEALD-RCGAGAGGTRNISGTNHYHVELE----RELADLHGKEA-----ALVFTSGYVS  118 (407)
T ss_pred             EEEECCCCcCCCCCHHHHHHHHHHHH-HcCCCCCCcCcCccCHHHHHHHH----HHHHHHhCCCc-----EEEECcHHHH
Confidence            345677775    7899999988765 354444444433 3344555665    57888898643     3456899999


Q ss_pred             HHHHHHHhcC--CCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhh---hCCcEE
Q 013217           99 NFEVYTAILK--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---FRPKLI  173 (447)
Q Consensus        99 ~~~~~~al~~--pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~---~~~kli  173 (447)
                      |..++..+..  +++.|+...+.|.+.+.        .+...+.  +...++      ..|+++++++++.   .++++|
T Consensus       119 n~~ai~~l~~~~~~~~i~~~~~~h~s~~~--------~~~~~~~--~~~~~~------~~d~~~le~~l~~~~~~~~~~v  182 (407)
T PRK09064        119 NDATLSTLAKLIPDCVIFSDELNHASMIE--------GIRRSRC--EKHIFR------HNDVAHLEELLAAADPDRPKLI  182 (407)
T ss_pred             HHHHHHHHhCCCCCCEEEEeCcchHHHHH--------HHHHcCC--cEEEEC------CCCHHHHHHHHHhccCCCCeEE
Confidence            9988887754  78877776655544321        1222332  222322      2478888888763   367888


Q ss_pred             EEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhcccccc-c--cC-CCCC-CcccEEEeCCCcccCCCCCceEEeec
Q 013217          174 IAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAA-S--VV-ADPF-KYCDVVTTTTHKSLRGPRGGMIFFKK  246 (447)
Q Consensus       174 i~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~-~--~~-~~~~-~~~Di~~~s~~K~l~Gp~gG~i~~~~  246 (447)
                      ++++++++.  ..|+++|.++|+++|+++++|++|+.|.... +  .. ..++ ...|++++|++|.+ |+.||++++++
T Consensus       183 ~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~-g~~GG~~~~~~  261 (407)
T PRK09064        183 AFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAF-GVMGGYIAGSA  261 (407)
T ss_pred             EEeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhh-hccCceEecCH
Confidence            888655543  6799999999999999999999998775321 1  10 0111 23589999999988 45679998877


Q ss_pred             CCcchhhHHHHhhhccCCCC-CCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeE
Q 013217          247 DPVLGVELESAINNAVFPGL-QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLV  325 (447)
Q Consensus       247 ~~~~~~~~~~~i~~~~~~~~-~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~  325 (447)
                            ++.+.+.....+.. .++.+....++...+++.+...  ....+++.++++++.+.|.+.|++++.+  .++++
T Consensus       262 ------~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~~~iv  331 (407)
T PRK09064        262 ------ALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKES--NEERERHQERAAKLKAALDAAGIPVMPN--ESHIV  331 (407)
T ss_pred             ------HHHHHHHHhCccccccCcCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHcCCCCCCC--CCCEE
Confidence                  66666654322221 2233344445555677766543  3346778899999999999988876643  34455


Q ss_pred             EecCCCCCCCHHHHHHHHh-hcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          326 LVDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       326 ~v~~~~~~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      .+.+.. .....++.+.|. ++||.++....|..  +...+++|++++..++    ++|++++++.|++++..
T Consensus       332 ~i~~~~-~~~~~~l~~~L~~~~gi~v~~~~~p~~--~~~~~~lRis~~~~~t----~edi~~l~~~l~~~~~~  397 (407)
T PRK09064        332 PVMVGD-PEKCKKASDMLLEEHGIYVQPINYPTV--PRGTERLRITPTPFHT----DEMIDHLVEALVEVWAR  397 (407)
T ss_pred             EEEeCC-HHHHHHHHHHHHHhCCEEEeeECCCCC--CCCCceEEEEeCCCCC----HHHHHHHHHHHHHHHHH
Confidence            554432 123456777764 57999976433321  2223579999998888    99999999999998764

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.93  E-value=7.5e-23  Score=202.66  Aligned_cols=335  Identities=19%  Similarity=0.178  Sum_probs=217.4

Q ss_pred             hcCeeEecCC--CC-CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH
Q 013217           20 FKSLELIASE--NF-TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS   96 (447)
Q Consensus        20 ~~~i~l~~~~--n~-~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs   96 (447)
                      +..|+|..+.  .+ .+|.+.+++...+.. |...+...++..|.   ..+.+..++++++++|.+.     .+.++||+
T Consensus        33 ~~~id~~~~~~~g~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~g~---~~l~~~l~~~l~~~~g~~~-----~i~~~sG~  103 (385)
T TIGR01825        33 KEVINLSSNNYLGFADHPRLKEAAAQAIQQ-YGVGAGAVRTIAGT---LRLHEELEEKLAKFKKTEA-----ALVFQSGF  103 (385)
T ss_pred             ceEEEeeccCccCCCCCHHHHHHHHHHHHH-cCCCCCccCcccCC---cHHHHHHHHHHHHHhCCCc-----EEEECcHH
Confidence            3457877553  34 678888888776643 32222222222222   2333344578889999753     35568999


Q ss_pred             HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh---CCcEE
Q 013217           97 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF---RPKLI  173 (447)
Q Consensus        97 ~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~---~~kli  173 (447)
                      +++..++.++++|||.|++.++.|+++..        .+...+.  +...+      ..+|++++++.+.+.   ++++|
T Consensus       104 ~a~~~a~~~~~~~gd~vi~~~~~~~~~~~--------~~~~~g~--~~~~~------~~~d~~~l~~~l~~~~~~~~~~v  167 (385)
T TIGR01825       104 NTNQGVLSALLRKGDIVLSDELNHASIID--------GLRLTKA--TKKIY------KHADMDDLDRVLRENPSYGKKLI  167 (385)
T ss_pred             HHHHHHHHHhCCCCCEEEEEccccHHHHH--------HHHhcCC--ceEEe------CCCCHHHHHHHHHhhccCCCeEE
Confidence            99998999999999999999888776532        1223332  22221      147889998877642   57888


Q ss_pred             EEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhcccccc-cc---CCCCC-CcccEEEeCCCcccCCCCCceEEeec
Q 013217          174 IAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAA-SV---VADPF-KYCDVVTTTTHKSLRGPRGGMIFFKK  246 (447)
Q Consensus       174 i~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~-~~---~~~~~-~~~Di~~~s~~K~l~Gp~gG~i~~~~  246 (447)
                      +++...+++  ..|+++|.++|++||+++++|++|..|.... +.   ....+ ...|+++.|+||++ |++||+++.++
T Consensus       168 ~~~~v~~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~gG~~~~~~  246 (385)
T TIGR01825       168 VTDGVFSMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAI-GVVGGYAAGHK  246 (385)
T ss_pred             EEecCCcCCCCccCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHh-hcCCCEEecCH
Confidence            777544443  6799999999999999999999987664431 10   00111 24789999999998 45679988877


Q ss_pred             CCcchhhHHHHhhhccCCCCCC-CCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeE
Q 013217          247 DPVLGVELESAINNAVFPGLQG-GPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLV  325 (447)
Q Consensus       247 ~~~~~~~~~~~i~~~~~~~~~g-~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~  325 (447)
                            ++.+.+.....+...+ .++...++++..+++.+...  .+..++..++++++.+.|.+.|+++..+.  ..++
T Consensus       247 ------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~~~~~~~--~~~~  316 (385)
T TIGR01825       247 ------ELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQRS--PELMERLWDNTRFFKAGLGKLGYDTGGSE--TPIT  316 (385)
T ss_pred             ------HHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHcCCCCCCCC--CCEE
Confidence                  6767665433222222 33445556666677655332  34567778889999999988888776432  2233


Q ss_pred             EecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          326 LVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       326 ~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      .+.+.. ..+..++.+.|.+.||.+.....|..  +....+||++++..++    ++|++++++.|+++++.
T Consensus       317 ~~~~~~-~~~~~~~~~~L~~~gi~v~~~~~~~~--~~~~~~iRi~~~~~~~----~e~i~~~~~~l~~~~~~  381 (385)
T TIGR01825       317 PVVIGD-EKAAQEFSRRLFDEGIFAQSIVFPTV--PRGTARIRNIPTAEHT----KDDLDQALDAYEKVGKE  381 (385)
T ss_pred             EEEECC-HHHHHHHHHHHHHCCcEEcccCCCCC--CCCCceEEEEEcCCCC----HHHHHHHHHHHHHHHHH
Confidence            333322 12346677777777999854322221  1123589999887777    99999999999988753

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PRK08636 aspartate aminotransferase; Provisional

Probab=99.93  E-value=1.6e-22  Score=201.23  Aligned_cols=340  Identities=15%  Similarity=0.116  Sum_probs=212.8

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCc
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSG   95 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sG   95 (447)
                      .+.++|..+...  .|+.+.+++...+......+|+..      +....+.+.+.+++.+.+|.+  +++   +|.+|+|
T Consensus        33 ~~~~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~------~G~~~lR~~ia~~l~~~~~~~~~~~~---~I~it~G  103 (403)
T PRK08636         33 EDIIDFSMGNPDGPTPQHIIDKLCESAQKPKTHGYSVS------KGIYKLRLAICNWYKRKYNVDLDPET---EVVATMG  103 (403)
T ss_pred             CCEEEcCCcCCCCCCCHHHHHHHHHHhcCCccCCCCCC------CCCHHHHHHHHHHHHHHhCCCCCCCC---eEEECCC
Confidence            455777554432  466677776554432112234332      223345555567787777754  321   3556899


Q ss_pred             H-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHH----HHHhhh--
Q 013217           96 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDML----EKTAIL--  167 (447)
Q Consensus        96 s-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l----~~~~~~--  167 (447)
                      + +++..++.++++|||.|++.+|.|+++..        .+...|.  ++++++++. +++.+|++.+    +++++.  
T Consensus       104 ~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~  173 (403)
T PRK08636        104 SKEGYVHLVQAITNPGDVAIVPDPAYPIHSQ--------AFILAGG--NVHKMPLEYNEDFELDEDQFFENLEKALRESS  173 (403)
T ss_pred             hHHHHHHHHHHhCCCCCEEEEcCCCCcchHH--------HHHhcCC--EEEEEeccccccCccChhhhhhHHHHHHhhcc
Confidence            8 89999999999999999999998876532        2334554  555555532 3467998754    555543  


Q ss_pred             hCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCC---CC-c--ccEEEeCCCccc--
Q 013217          168 FRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP---FK-Y--CDVVTTTTHKSL--  234 (447)
Q Consensus       168 ~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~---~~-~--~Di~~~s~~K~l--  234 (447)
                      .++++|+++.|+||+  ..+   +++|.++|++|++++|+|+++ ..+.+.+....+   ++ .  ..+++.|++|++  
T Consensus       174 ~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y-~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~  252 (403)
T PRK08636        174 PKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAY-ADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNM  252 (403)
T ss_pred             CCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccc-hhhccCCCCCCChhcCCCccccEEEEEecccccCC
Confidence            367888888778886  444   578888999999999999985 444433211111   11 1  225578999997  


Q ss_pred             CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcE
Q 013217          235 RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYK  314 (447)
Q Consensus       235 ~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~  314 (447)
                      +|.|.||++.++      ++.+.+.........+.+...+.++. .++... ....++..+.+.++++.+.+.|.+.|+.
T Consensus       253 ~GlRiG~iv~~~------~li~~~~~~~~~~~~~~~~~~q~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~  324 (403)
T PRK08636        253 AGWRVGFVVGNK------KLVGALKKIKSWLDYGMFTPIQVAAT-IALDGD-QSCVEEIRETYRKRRDVLIESFANAGWE  324 (403)
T ss_pred             ccceeeeeeCCH------HHHHHHHHHHHHhcccCChHHHHHHH-HHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence            688999999877      67666655332211233333333332 334321 2234566677788888899999888876


Q ss_pred             eeeCCCCCeeEEecCCCC--CCCHHHHHH-HHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217          315 LVSGGSDNHLVLVDLRPM--GIDGARVEK-ILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  391 (447)
Q Consensus       315 ~~~~~~~~~~~~v~~~~~--~~~~~~~~~-~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i  391 (447)
                      +..+ ....++|+++++.  +.+..++.. .++++||.+..+...   .....+++||++.  +.    ++++++..+.|
T Consensus       325 ~~~p-~~g~~~~~~l~~~~~~~~~~~l~~~ll~~~gV~v~pg~~f---~~~~~~~iRi~~~--~~----~~~l~~~~~rl  394 (403)
T PRK08636        325 LQKP-RASMFVWAKIPEPARHLGSLEFSKQLLTEAKVAVSPGIGF---GEYGDEYVRIALI--EN----ENRIRQAARNI  394 (403)
T ss_pred             ccCC-CcceEEEEECCCccCCCCHHHHHHHHHHhCCEEEecchhh---CcCCCCeEEEEec--CC----HHHHHHHHHHH
Confidence            5543 3467788888642  234566665 466799999543221   1112468999974  33    78888888888


Q ss_pred             HHHHHH
Q 013217          392 HEGVEI  397 (447)
Q Consensus       392 ~~~l~~  397 (447)
                      .++++.
T Consensus       395 ~~~l~~  400 (403)
T PRK08636        395 KKFLKE  400 (403)
T ss_pred             HHHHHh
Confidence            777753

>PRK08068 transaminase; Reviewed

Probab=99.93  E-value=1.1e-22  Score=201.38  Aligned_cols=319  Identities=15%  Similarity=0.084  Sum_probs=206.4

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CCCccceeeecCCc
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSG   95 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~~~~~v~~~sG   95 (447)
                      ++.|+|..+...  .++.+.+++...+......+|+..      .....+.+.+.+++.+.+|.  ++++   +|.+|+|
T Consensus        32 ~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~------~g~~~lr~aia~~~~~~~g~~~~~~~---~i~it~G  102 (389)
T PRK08068         32 HDVINLGQGNPDQPTPEHIVEALQEAAENPANHKYSPF------RGYPFLKEAAADFYKREYGVTLDPET---EVAILFG  102 (389)
T ss_pred             CCeEEecCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCC------CCCHHHHHHHHHHHHHHhCCCCCCCc---cEEEcCC
Confidence            455888766543  357788888776654222234321      12345655555666666674  4431   2334777


Q ss_pred             H-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-CCCCCHHHHHHHhhhhCCcEE
Q 013217           96 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLI  173 (447)
Q Consensus        96 s-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~~~~~~~kli  173 (447)
                      + +++..++.++++|||+|++.+|.|+.+..        .+...|.  +++.++++++ ++.+|++++++.+.+ ++++|
T Consensus       103 ~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~--------~~~~~g~--~~~~i~~~~~~~~~~d~~~l~~~~~~-~~~~v  171 (389)
T PRK08068        103 GKAGLVELPQCLMNPGDTILVPDPGYPDYLS--------GVALARA--QFETMPLIAENNFLPDYTKIPEEVAE-KAKLM  171 (389)
T ss_pred             cHHHHHHHHHHhCCCCCEEEEcCCCCcchHH--------HHHhcCC--EEEEeecccccCCCCCHHHHHHhccc-cceEE
Confidence            6 88888889999999999999998876532        2334554  5555566643 467899999998876 89999


Q ss_pred             EEcCCCCCC--CCCh---HHHHHHHHHhCCEEEEehhhhccccccccCCCC-CC-----cccEEEeCCCccc--CCCCCc
Q 013217          174 IAGASAYPR--DFDY---PRMRQIADAVGALLMMDMAHISGLVAASVVADP-FK-----YCDVVTTTTHKSL--RGPRGG  240 (447)
Q Consensus       174 i~~~~~~~~--~~~~---~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~-~~-----~~Di~~~s~~K~l--~Gp~gG  240 (447)
                      +++.|+||+  ..+.   ++|.++|+++|+++|+|+++ ..+.+.+..+.+ +.     ...+++.|++|.+  +|.|.|
T Consensus       172 ~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay-~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG  250 (389)
T PRK08068        172 YLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAY-GAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVA  250 (389)
T ss_pred             EEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhh-hhhccCCCCCcChhhCCCccCCEEEEecchhccCCccceeE
Confidence            999888886  5554   67888899999999999996 333332211111 11     1347889999987  578889


Q ss_pred             eEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCC
Q 013217          241 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS  320 (447)
Q Consensus       241 ~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~  320 (447)
                      +++.++      ++.+.+.....+...+.+...+.++. .++..- ....+..++++.++++.+.+.|++.|+.+..+ .
T Consensus       251 ~~~~~~------~l~~~l~~~~~~~~~~~~~~~q~~~~-~~l~~~-~~~~~~~~~~~~~~r~~~~~~L~~~g~~~~~~-~  321 (389)
T PRK08068        251 FAVGNE------SVIEAINLLQDHLFVSLFGAIQDAAI-EALLSD-QSCVAELVARYESRRNAFISACREIGWEVDAP-K  321 (389)
T ss_pred             eEecCH------HHHHHHHHHHhhccCCCChHHHHHHH-HHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC-C
Confidence            999877      67777765443333333333333322 233221 13346778888888999999998888875543 3


Q ss_pred             CCeeEEecCCCCCCCHHHHHHHHh-hcCeEEccCCCCCCCCCCCCCeEEEecC
Q 013217          321 DNHLVLVDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSP  372 (447)
Q Consensus       321 ~~~~~~v~~~~~~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~  372 (447)
                      .+.++|+.+.. +.+..++.+.|. ++||.+..+...+   ....+++|++..
T Consensus       322 g~~~~~v~~~~-~~~~~~~~~~l~~~~gi~v~pg~~f~---~~~~~~iRi~~~  370 (389)
T PRK08068        322 GSFFAWMPVPK-GYTSEQFADLLLEKAHVAVAPGNGFG---EHGEGYVRVGLL  370 (389)
T ss_pred             eeEEEEEECCC-CCCHHHHHHHHHHhCCEEEecchHhC---ccCCCeEEEEEc
Confidence            45667888753 456778888776 5799996542221   122468999974

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.93  E-value=8.7e-23  Score=199.33  Aligned_cols=319  Identities=15%  Similarity=0.131  Sum_probs=215.0

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-   96 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-   96 (447)
                      ...+.|..+++.  +|+.+.+++.+.+......+|+..      . ...+    ++.++++++++++    +|.+++|+ 
T Consensus        22 ~~~~~l~~~~~~~~~p~~~~~a~~~~~~~~~~~~y~~~------~-~~~l----r~~ia~~~~~~~~----~i~it~G~~   86 (351)
T PRK14807         22 PYKYKMDANETPFELPEEVIKNIQEIVKSSQVNIYPDP------T-AEKL----REELARYCSVVPT----NIFVGNGSD   86 (351)
T ss_pred             CceeEccCCCCCCCCCHHHHHHHHHHhhcCcccCCCCc------c-HHHH----HHHHHHHhCCCcc----cEEEecCHH
Confidence            345778888885  578999998776643212233221      1 2334    3567788898875    44558888 


Q ss_pred             HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 013217           97 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG  176 (447)
Q Consensus        97 ~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~  176 (447)
                      +++..++.++++|||+|++.+|.|..+..        .....|.  +++.++++ +++.+|+++++++++..++|+|+++
T Consensus        87 ~~l~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~~~~~~~k~v~l~  155 (351)
T PRK14807         87 EIIHLIMLAFINKGDVVIYPHPSFAMYSV--------YSKIAGA--VEIPVKLK-EDYTYDVGSFIKVIEKYQPKLVFLC  155 (351)
T ss_pred             HHHHHHHHHhcCCCCEEEEeCCChHHHHH--------HHHHcCC--eEEEeecC-CCCCCCHHHHHHHhhccCCCEEEEe
Confidence            77888888999999999999987764321        1233444  55666665 4578999999999976689999998


Q ss_pred             CCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC--cccEEEeCCCccc--CCCCCceEEeecCCcc
Q 013217          177 ASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL--RGPRGGMIFFKKDPVL  250 (447)
Q Consensus       177 ~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~--~~Di~~~s~~K~l--~Gp~gG~i~~~~~~~~  250 (447)
                      .++||+  ..+.+++.++|++++.++++|+++. ++. .......+.  ...+++.|++|++  +|.|.||++.++    
T Consensus       156 ~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~-~~~-~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~----  229 (351)
T PRK14807        156 NPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYF-EFY-GNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVANE----  229 (351)
T ss_pred             CCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcch-hhc-ccchHHHhhhCCCEEEEecchHhcccchhceeeeecCH----
Confidence            888886  7899999999999889999999963 332 111111111  1348889999986  688889999877    


Q ss_pred             hhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEeeeCCCCCeeEEecC
Q 013217          251 GVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGSDNHLVLVDL  329 (447)
Q Consensus       251 ~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~v~~  329 (447)
                        ++.+.+.....+..   .+.....++..+++.   ..+++..+.+.++++.+.+.|.+ .|+.+..+  +..++|+.+
T Consensus       230 --~~~~~~~~~~~~~~---~~~~~q~~~~~~l~~---~~~~~~~~~~~~~r~~l~~~l~~~~g~~~~~~--~~~~~~i~~  299 (351)
T PRK14807        230 --NILKYLNLVKSPYN---INSLSQVIALKVLRT---GVLKERVNYILNERERLIKELSKIPGIKVYPS--KTNFILVKF  299 (351)
T ss_pred             --HHHHHHHHccCCCC---cCHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHhCCCcEECcC--CccEEEEEc
Confidence              67777765433321   222222223333332   33566677778888889999977 47776433  345677776


Q ss_pred             CCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          330 RPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       330 ~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      .    +..++.+.|.++||.+....    .....++++|+++.   +    .++++++.+.|++++
T Consensus       300 ~----~~~~~~~~l~~~gV~v~~~~----~~~~~~~~iRis~~---~----~~~~~~l~~~l~~~~  350 (351)
T PRK14807        300 K----DADYVYQGLLERGILVRDFS----KVEGLEGALRITVS---S----CEANDYLINGLKELL  350 (351)
T ss_pred             C----CHHHHHHHHHHCCEEEEECC----CCCCCCCeEEEEcC---C----HHHHHHHHHHHHHhh
Confidence            4    46778888888999996421    11112458999964   3    788999999987653

>PLN03032 serine decarboxylase; Provisional

Probab=99.92  E-value=2.4e-22  Score=194.59  Aligned_cols=317  Identities=15%  Similarity=0.077  Sum_probs=214.6

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc--CC
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--KP  109 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~--~p  109 (447)
                      ..+.++++|..++.+.+  |+|...+..| ....++|+.+++++++++|++++++.. +.+++||+||..++.+..  .+
T Consensus        35 ~~~~~~~~~~~~~~~~~--gnP~s~~~~g-~~a~~~e~~v~~~ia~llg~~~~~~~G-~fTsGGTEaNl~al~~ar~~~~  110 (374)
T PLN03032         35 FDYGELSQLMKYSINNL--GDPFIESNYG-VHSRQFEVGVLDWFARLWELEKDEYWG-YITTCGTEGNLHGILVGREVFP  110 (374)
T ss_pred             cChHHHHHHHHhcccCC--CCCcccCCCC-ccHHHHHHHHHHHHHHHhCCCCccCCE-EEeCchHHHHHHHHHHHHHhCC
Confidence            34457888888776643  7787744323 235678889999999999998765311 334566799988776543  35


Q ss_pred             CCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh--CCcEEEEc-CCC-CCCCCC
Q 013217          110 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAG-ASA-YPRDFD  185 (447)
Q Consensus       110 gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~--~~klii~~-~~~-~~~~~~  185 (447)
                      +++|+++..+|.+..        +.+...|.....+  +++ .++.+|+++|++++++.  +|.+|+++ .++ .+...|
T Consensus       111 ~~~vi~s~~~H~Sv~--------kaa~~lg~~~~~V--~~d-~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idp  179 (374)
T PLN03032        111 DGILYASRESHYSVF--------KAARMYRMEAVKV--PTL-PSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDD  179 (374)
T ss_pred             CcEEEeCCCceeHHH--------HHHHHcCCCCeEe--eeC-CCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCC
Confidence            678888887776653        2334455444444  465 56899999999999763  46777775 233 334889


Q ss_pred             hHHHHHHHHHhC-----CEEEEehhhhccccccccCCCCC---CcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHH
Q 013217          186 YPRMRQIADAVG-----ALLMMDMAHISGLVAASVVADPF---KYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES  256 (447)
Q Consensus       186 ~~~i~~ia~~~g-----~~livD~a~~~g~~~~~~~~~~~---~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~  256 (447)
                      +++|+++|+++|     +|+++|+|++.+.++......++   ..+|.++.|+||+++.|.| |++++++      .+.+
T Consensus       180 i~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P~g~G~ll~r~------~~~~  253 (374)
T PLN03032        180 LDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMPCGVALTRK------KHVK  253 (374)
T ss_pred             HHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCCcCCcEEEECcccccCCCcCeEEEEEEc------hhhH
Confidence            999999999997     58999999877766532111111   1489999999998777999 9999998      3444


Q ss_pred             Hhhhc------cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCC
Q 013217          257 AINNA------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLR  330 (447)
Q Consensus       257 ~i~~~------~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~  330 (447)
                      .+...      ..++..|+-+-...++++.+++....+++.+.+++..++++++.+.|++.|++++..+ ...  ++.++
T Consensus       254 ~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~p-~~~--~V~f~  330 (374)
T PLN03032        254 ALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEAGLTCRLNE-LSS--TVVFE  330 (374)
T ss_pred             hhccCCcccCCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEECC-Cce--EEEEc
Confidence            33210      1123456655566778888999888889999999999999999999999999877643 222  23333


Q ss_pred             CCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217          331 PMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       331 ~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~  393 (447)
                      ...  .+.    +. .|..++.          .+..+|+.++.-++    .+.++++++-|++
T Consensus       331 ~~~--~~~----~~-~~w~l~~----------~~~~~hi~vm~~~~----~~~id~fi~dl~~  372 (374)
T PLN03032        331 RPM--DEA----FI-KKWQLAC----------EGDIAHVVVMPNVT----VEKLDEFVEELVE  372 (374)
T ss_pred             CCC--cHh----Hh-heeeecc----------cCCEEEEEECCCCC----HHHHHHHHHHHhc
Confidence            321  111    21 3555532          12378988766555    6777777766543

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.92  E-value=2.7e-22  Score=198.70  Aligned_cols=341  Identities=16%  Similarity=0.146  Sum_probs=217.0

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-   96 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-   96 (447)
                      ...|+|..+++.  .++.+.+++...+...+ ..|+.      ......+++.+.+++.+.+|.....- -+|.+++|+ 
T Consensus        30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~------~~g~~~lr~~ia~~~~~~~~~~~~~~-~~i~it~G~~  101 (391)
T PRK07309         30 PGILKLTLGEPDFTTPDHVKEAAKRAIDANQ-SHYTG------MAGLLELRQAAADFVKEKYNLDYAPE-NEILVTIGAT  101 (391)
T ss_pred             CCeEEcCCCCCCCCCCHHHHHHHHHHHhcCC-CCCCC------CCCcHHHHHHHHHHHHHHhCCCCCCC-CcEEEeCChH
Confidence            345777666664  36778888876654321 12322      22235666666677776667631100 134457776 


Q ss_pred             HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh--CCcEEE
Q 013217           97 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLII  174 (447)
Q Consensus        97 ~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~--~~klii  174 (447)
                      +++..++.+++++||+|++.+|.|+++..        .+...|.  +++.++.+++++.+|+++++++++..  ++++|+
T Consensus       102 ~al~~~~~~~~~~gd~vl~~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~i~  171 (391)
T PRK07309        102 EALSASLTAILEPGDKVLLPAPAYPGYEP--------IVNLVGA--EIVEIDTTENDFVLTPEMLEKAILEQGDKLKAVI  171 (391)
T ss_pred             HHHHHHHHHhcCCCCEEEEeCCCCcchHH--------HHHHcCC--EEEEEecCCcCCcCCHHHHHHHhhccCCCeEEEE
Confidence            89999999999999999999998876531        2334454  55566565445679999999988642  588999


Q ss_pred             EcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC----cccEEEeCCCccc--CCCCCceEE
Q 013217          175 AGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSL--RGPRGGMIF  243 (447)
Q Consensus       175 ~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~----~~Di~~~s~~K~l--~Gp~gG~i~  243 (447)
                      ++.|+||+  ..   ++++|.++|++||+++++|+++ ..+.+.+....++.    ...+++.|++|.+  +|.|.|+++
T Consensus       172 l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y-~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRvG~~v  250 (391)
T PRK07309        172 LNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVY-SELTYTGEPHVSIAEYLPDQTILINGLSKSHAMTGWRIGLIF  250 (391)
T ss_pred             EECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccc-cceeeCCCCCCCHHHhccCCEEEEecChhhccCccceeEEEE
Confidence            98778775  44   4789999999999999999996 44443221111111    1238889999986  677889999


Q ss_pred             eecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCe
Q 013217          244 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNH  323 (447)
Q Consensus       244 ~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~  323 (447)
                      .++      ++.+.+..... ....+++.....++..+++... .......+++.++++.+.+.|++.|+.+..+ ..+.
T Consensus       251 ~~~------~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p-~gg~  321 (391)
T PRK07309        251 APA------EFTAQLIKSHQ-YLVTAATTMAQFAAVEALTNGK-DDALPMKKEYIKRRDYIIEKMTDLGFKIIKP-DGAF  321 (391)
T ss_pred             eCH------HHHHHHHHHHh-hcccCCChHHHHHHHHHHhCCh-hHHHHHHHHHHHHHHHHHHHHHHCCCeecCC-CeeE
Confidence            987      67666665322 1112233333333333444311 1123455677788888999998888876543 3355


Q ss_pred             eEEecCCCC-CCCHHHHHH-HHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          324 LVLVDLRPM-GIDGARVEK-ILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       324 ~~~v~~~~~-~~~~~~~~~-~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      ++|+.++.. ..+..++.+ .++++||.+..+...   .+...++||+++..  +    .+++++.++.|++++..
T Consensus       322 ~~~~~l~~~~~~~~~~~~~~l~~~~gv~v~pg~~f---~~~~~~~iRi~~~~--~----~~~l~~~i~~l~~~~~~  388 (391)
T PRK07309        322 YIFAKIPAGYNQDSFKFLQDFARKKAVAFIPGAAF---GPYGEGYVRLSYAA--S----METIKEAMKRLKEYMEE  388 (391)
T ss_pred             EEEEECCCCCCCCHHHHHHHHHHhCCEEEeCchhh---CCCCCCEEEEEecC--C----HHHHHHHHHHHHHHHHh
Confidence            667776431 224556665 567899999543211   12235689998753  3    67888888888877753

>PRK07550 hypothetical protein; Provisional

Probab=99.92  E-value=3e-22  Score=198.30  Aligned_cols=334  Identities=14%  Similarity=0.065  Sum_probs=215.4

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCc
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSG   95 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sG   95 (447)
                      ...+.|-.+++.  .++.+.+++.+.+.+.....|      +......++++.+.+++.+.+|..  ++    +|.+|+|
T Consensus        29 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y------~~~~G~~~lr~~ia~~~~~~~g~~~~~~----~i~~t~G   98 (386)
T PRK07550         29 GPLIDLSQAVPGYPPPPELLRALAEAAADPAAHLY------GPVEGLPELREAYAAHYSRLYGAAISPE----QVHITSG   98 (386)
T ss_pred             CCeEEeCCCCCCCCCCHHHHHHHHHHHhCcCCcCC------CCCCCCHHHHHHHHHHHHHHhCCCCCcc----eEEEecC
Confidence            356788777764  367888888776532111122      211223466666667777777754  43    4455788


Q ss_pred             H-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhhCCcEE
Q 013217           96 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLI  173 (447)
Q Consensus        96 s-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~~~kli  173 (447)
                      + +|+..++.++++|||+|++.+|.|.++..        .+...|.  ++++++.++ .++.+|++++++++++ ++++|
T Consensus        99 ~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~~~~~l~~~~~~-~~~~v  167 (386)
T PRK07550         99 CNQAFWAAMVTLAGAGDEVILPLPWYFNHKM--------WLDMLGI--RPVYLPCDEGPGLLPDPAAAEALITP-RTRAI  167 (386)
T ss_pred             cHHHHHHHHHHhcCCCCEEEEcCCCCcchHH--------HHHhcCC--EEEEEecCCCcCCCCCHHHHHHHhcc-cCcEE
Confidence            6 89988999999999999999988766532        2234454  566666764 3567899999999987 89998


Q ss_pred             EEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCC-CCC-----cccEEEeCCCccc--CCCCCc
Q 013217          174 IAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVAD-PFK-----YCDVVTTTTHKSL--RGPRGG  240 (447)
Q Consensus       174 i~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~-~~~-----~~Di~~~s~~K~l--~Gp~gG  240 (447)
                      ++..++||+  ..+   +++|.++|+++|+++|+|+++. .+...+..+. .+.     .-.+++.|++|++  +|.|.|
T Consensus       168 ~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG  246 (386)
T PRK07550        168 ALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYR-DFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVG  246 (386)
T ss_pred             EEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccch-hhccCCCCCcchhhCCCccccEEEEecchhhccCcccceE
Confidence            887778875  444   7899999999999999999863 3332211111 111     1236789999987  478889


Q ss_pred             eEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCC
Q 013217          241 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGG  319 (447)
Q Consensus       241 ~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~  319 (447)
                      ++++++      ++.+.+.........+. +.....++..++..+ ....++..+.+.++++.+.+.|.+. ++.+..  
T Consensus       247 ~i~~~~------~~~~~~~~~~~~~~~~~-s~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~--  316 (386)
T PRK07550        247 AVVASP------ARIAEIEKFMDTVAICA-PRIGQIAVAWGLPNL-ADWRAGNRAEIARRRDAFRAVFARLPGWELLA--  316 (386)
T ss_pred             eeecCH------HHHHHHHHHHhhcccCC-CcHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHHHHhCCCceeCC--
Confidence            999987      66666655433322222 223333333344332 1223455667778888888998874 665433  


Q ss_pred             CCCeeEEecCCCCCCCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217          320 SDNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       320 ~~~~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~  393 (447)
                      +..++.|+.+...+.+..++...| +++||.+..+...+   .....++|+++.. .+    ++++++..+.|.+
T Consensus       317 ~g~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~---~~~~~~iRis~~~-~~----~~~~~~~~~~l~~  383 (386)
T PRK07550        317 SGAYFAYVRHPFPDRPSREVARRLAKEAGILCLPGTMFG---PGQEGYLRLAFAN-AD----VAGIGELVERLRA  383 (386)
T ss_pred             CceEEEEecCCCCCCCHHHHHHHHHHhcCEEEeCchhhC---CCCCCEEEEEeec-CC----HHHHHHHHHHHHh
Confidence            345677887754356777877765 67899996542221   1124589999753 23    7888888887765

>PRK08912 hypothetical protein; Provisional

Probab=99.92  E-value=2.3e-22  Score=199.08  Aligned_cols=338  Identities=16%  Similarity=0.124  Sum_probs=216.6

Q ss_pred             cCeeEecCCC--CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCcH
Q 013217           21 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGS   96 (447)
Q Consensus        21 ~~i~l~~~~n--~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sGs   96 (447)
                      ..++|..+..  ..|+.+.+++...+.+.. .+|+..      ....++.+...+++.+.+|.+  ++   .+|..|+|+
T Consensus        27 ~~i~l~~g~p~~~~p~~~~~~~~~~~~~~~-~~Y~~~------~G~~~lr~~ia~~~~~~~g~~~~~~---~~i~~t~G~   96 (387)
T PRK08912         27 GAINLGQGFPDDPGPEDVRRAAADALLDGS-NQYPPM------MGLPELRQAVAAHYARFQGLDLDPE---TEVMVTSGA   96 (387)
T ss_pred             CeEEccCCCCCCCCCHHHHHHHHHHHhcCC-CCCCCC------CCcHHHHHHHHHHHHHHhCCCCCCc---ccEEEeCCc
Confidence            4577764443  236777777766554321 233332      223355555566777777754  43   134447775


Q ss_pred             -HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEE
Q 013217           97 -PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIA  175 (447)
Q Consensus        97 -~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~  175 (447)
                       +++..++.++++|||+|++.+|.|+++..        .+...|.  +++.++++++++.+|++++++.+.. ++|+|++
T Consensus        97 ~~al~~~~~~~~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l  165 (387)
T PRK08912         97 TEALAAALLALVEPGDEVVLFQPLYDAYLP--------LIRRAGG--VPRLVRLEPPHWRLPRAALAAAFSP-RTKAVLL  165 (387)
T ss_pred             HHHHHHHHHHhcCCCCEEEEeCCCchhhHH--------HHHHcCC--EEEEEecCcccCcCCHHHHHHHhCc-cceEEEE
Confidence             89888999999999999999998766431        2334454  5555556545678999999998876 8999998


Q ss_pred             cCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCC---C---CcccEEEeCCCccc--CCCCCceE
Q 013217          176 GASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP---F---KYCDVVTTTTHKSL--RGPRGGMI  242 (447)
Q Consensus       176 ~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~---~---~~~Di~~~s~~K~l--~Gp~gG~i  242 (447)
                      +.++||+  ..+   +++|.++|+++|+++++|+++. .+.+.+....+   +   ...+++++|++|.+  +|.|.|++
T Consensus       166 ~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~  244 (387)
T PRK08912        166 NNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWE-HVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFV  244 (387)
T ss_pred             eCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhh-hcccCCCCCcChhhCCCccCceEEEeechhhccCcCceeEEE
Confidence            8888886  454   6778999999999999999964 33332211111   1   12468999999986  57778999


Q ss_pred             EeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCC
Q 013217          243 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDN  322 (447)
Q Consensus       243 ~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~  322 (447)
                      ++++      ++.+.+.........+.+...+ .++..++... ...+++..+++.++++.+.+.|.+.|+++..+ ..+
T Consensus       245 ~~~~------~~~~~l~~~~~~~~~~~~~~~q-~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~g~  315 (387)
T PRK08912        245 CAAP------PLLRVLAKAHQFLTFTTPPNLQ-AAVAYGLGKP-DDYFEGMRADLARSRDRLAAGLRRIGFPVLPS-QGT  315 (387)
T ss_pred             ecCH------HHHHHHHHHHhhccccCChHHH-HHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-Ccc
Confidence            9987      6766665433222222222222 2333344321 22346677888899999999999888876543 346


Q ss_pred             eeEEecCCCC--CCCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          323 HLVLVDLRPM--GIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       323 ~~~~v~~~~~--~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      +++|+++.+.  ..+..++.+.| +++||.+..+...+... ...+++|+++..  .    ++++++..+.|.+.++
T Consensus       316 ~~l~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~-~~~~~iRl~~~~--~----~~~l~~~l~rl~~~l~  385 (387)
T PRK08912        316 YFLTVDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSAFYEED-PVTSVVRFCFAK--R----DATLDEAVERLAAARR  385 (387)
T ss_pred             eEEEecccccCCCCCHHHHHHHHHhcCCEEEecchhhCCCC-CCCCEEEEEEeC--C----HHHHHHHHHHHHHHHh
Confidence            6778887642  23566676665 67899996542211111 124689999763  2    6777777777766654

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.92  E-value=1.4e-22  Score=197.89  Aligned_cols=320  Identities=13%  Similarity=0.071  Sum_probs=209.1

Q ss_pred             CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCcH-HHHHHHHHHhc
Q 013217           31 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGS-PANFEVYTAIL  107 (447)
Q Consensus        31 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sGs-~a~~~~~~al~  107 (447)
                      ..++.+.+++.+....  ...|+..      +....+++.+.+++.+.+|.+  ++   -+|.+|+|+ +++..++.+++
T Consensus        13 ~~~~~~~~~~~~~~~~--~~~Y~~~------~G~~~lr~aia~~~~~~~g~~~~~~---~~Iiit~Gs~~ai~~~~~~~~   81 (350)
T TIGR03537        13 PTPPFIRKALIDAVPE--VSQYPSA------LGTKALREAISGWFERRFGVKLDPD---AQVLPSAGSKEAIFHFPLVFI   81 (350)
T ss_pred             CCCHHHHHHHHHHHhc--cCCCCCC------CCCHHHHHHHHHHHHHHhCCCCCCC---CcEEEcCChHHHHHHHHHHHc
Confidence            3478888888765432  2233322      223355555566777766754  42   145569998 89888989999


Q ss_pred             CCC---CEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC-
Q 013217          108 KPH---DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLIIAGASAYPR-  182 (447)
Q Consensus       108 ~pg---d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~~~klii~~~~~~~~-  182 (447)
                      +||   |+|++.+|.|.++..        .+...|.  +++++++++ +++.+|++++++++.+ ++|+|+++.++||+ 
T Consensus        82 ~~g~~~d~Vl~~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~~~~-~~~~i~i~~p~NPtG  150 (350)
T TIGR03537        82 DPEEDRRRVIFGTPGYPVYER--------GALFAGG--EPTAVKLKKEDGFLLRLEKVEKSILE-ETKIVWINYPHNPTG  150 (350)
T ss_pred             CCCCCCceEEEcCCCCcchHH--------HHHhcCC--EEEEcccCcccCCccCHHHHHHhhhh-ccEEEEEeCCCCCcC
Confidence            988   699999988766532        2345554  666666653 3456999999999877 89999998888886 


Q ss_pred             -CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC--C-cccEEEeCCCccc--CCCCCceEEeecCCcchhh
Q 013217          183 -DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF--K-YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVE  253 (447)
Q Consensus       183 -~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~--~-~~Di~~~s~~K~l--~Gp~gG~i~~~~~~~~~~~  253 (447)
                       ..+   +++|.++|+++|+++|+|+++.. +...+...+..  . ...+++.|++|++  +|.|.|+++.++      +
T Consensus       151 ~~~~~~~~~~l~~~a~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~GlRiG~~~~~~------~  223 (350)
T TIGR03537       151 ATAPRSYLKETIAMCREHGIILCSDECYTE-IYFGEPPHSALEVGIENVLAFHSLSKRSGMTGYRSGFVAGDE------K  223 (350)
T ss_pred             cccCHHHHHHHHHHHHHcCcEEEEeccccc-cccCCCCCchhhcCcCCEEEEeecccccCCccccceeeecCH------H
Confidence             566   78999999999999999999642 22222111111  1 1247888999986  577889998776      6


Q ss_pred             HHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCC
Q 013217          254 LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMG  333 (447)
Q Consensus       254 ~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~  333 (447)
                      +.+.+.........+++...+. ++..++.  .....++..+++.++.+.+.+.|.+.|+++..+ ..+.++|+++.. +
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~q~-~~~~~l~--~~~~~~~~r~~l~~~~~~~~~~l~~~g~~~~~~-~g~~~~~~~~~~-~  298 (350)
T TIGR03537       224 LISFLRKLRANFGVASPDFVQA-AAKAAWS--DDNHVLERRKIFKRKRDLFIEFFNKVGLEYLYP-DATFYLWVKVPS-G  298 (350)
T ss_pred             HHHHHHHHHHhhccCCCHHHHH-HHHHHhC--CcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC-CeEEEEEEECCC-C
Confidence            7666665433322333322222 2222332  122335667778888888999998888876543 345667888753 4


Q ss_pred             CCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217          334 IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       334 ~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~  393 (447)
                      .+..++.+.|.++||.+..+...+   .....++|+++.  .+    ++++++..+.|++
T Consensus       299 ~~~~~l~~~L~~~gv~v~~g~~f~---~~~~~~~Ri~~~--~~----~~~~~~~l~~~~~  349 (350)
T TIGR03537       299 IDAKDYALRLLENGIVVAPGENFG---SGEEGYVRVALV--PT----LEECEEALRLWER  349 (350)
T ss_pred             CCHHHHHHHHHHCCEEEcCchhhC---CCCCCEEEEEec--CC----HHHHHHHHHHHhc
Confidence            567788888888999996532221   112468999863  33    7788777766653

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK07777 aminotransferase; Validated

Probab=99.92  E-value=2.7e-22  Score=198.63  Aligned_cols=341  Identities=16%  Similarity=0.146  Sum_probs=214.0

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-   96 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-   96 (447)
                      ...++|..+...  .++.+.+++...+.... .+|+.      .....++++.+.+++.+.+|.+.+.- -+|..|+|+ 
T Consensus        24 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~-~~Y~~------~~g~~~lr~~ia~~~~~~~g~~~~~~-~~i~~t~G~~   95 (387)
T PRK07777         24 TGAVNLGQGFPDEDGPPEMLEAAQEAIAGGV-NQYPP------GPGIPELRAAIAAQRRRRYGLEYDPD-TEVLVTVGAT   95 (387)
T ss_pred             CCeEEccCCCCCCCCCHHHHHHHHHHHhcCC-CCCCC------CCCCHHHHHHHHHHHHHHhCCCCCCC-CcEEEeCCcH
Confidence            356787654432  35667777666554321 12322      22234566555667777788762110 023346665 


Q ss_pred             HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC--CCCCCHHHHHHHhhhhCCcEEE
Q 013217           97 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES--TGLVDYDMLEKTAILFRPKLII  174 (447)
Q Consensus        97 ~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~id~~~l~~~~~~~~~klii  174 (447)
                      +|+.+++.+++++||+|++..|.|+++..        .+...|.  +++.++++++  ++.+|++++++.+.+ ++++|+
T Consensus        96 ~al~~~~~~~~~~gd~vli~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~  164 (387)
T PRK07777         96 EAIAAAVLGLVEPGDEVLLIEPYYDSYAA--------VIAMAGA--HRVPVPLVPDGRGFALDLDALRAAVTP-RTRALI  164 (387)
T ss_pred             HHHHHHHHHhcCCCCEEEEeCCCchhhHH--------HHHHCCC--EEEEeecCCccCCCcCCHHHHHHhcCc-ccEEEE
Confidence            89998999999999999999988765421        2334454  4445555533  467999999998876 899999


Q ss_pred             EcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCC------CcccEEEeCCCccc--CCCCCce
Q 013217          175 AGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF------KYCDVVTTTTHKSL--RGPRGGM  241 (447)
Q Consensus       175 ~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~------~~~Di~~~s~~K~l--~Gp~gG~  241 (447)
                      +++++||+  ..   ++++|.++|+++|+++++|+++ .++.+.+....++      ...++++.|++|++  +|.|.|+
T Consensus       165 l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~  243 (387)
T PRK07777        165 VNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVY-EHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGW  243 (387)
T ss_pred             EcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccc-hhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCceeEE
Confidence            98788876  33   4789999999999999999996 4444322111111      13568999999987  4677799


Q ss_pred             EEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCC
Q 013217          242 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSD  321 (447)
Q Consensus       242 i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~  321 (447)
                      +++++      ++.+.+.........+.+...+. +++.++... ....++..+.+.++++.+.+.|.+.|+++..+ ..
T Consensus       244 ~~~~~------~l~~~~~~~~~~~~~~~~~~~q~-~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~g  314 (387)
T PRK07777        244 ACGPA------PLIAAVRAAKQYLTYVGGAPFQP-AVAHALDHE-DAWVAALRDSLQAKRDRLAAGLAEAGFEVHDS-AG  314 (387)
T ss_pred             EecCH------HHHHHHHHHHhhcccCCCCHHHH-HHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHhCCCCccCC-Cc
Confidence            99887      66666554322111112222222 223344322 23345667888899999999998888776543 34


Q ss_pred             CeeEEecCCCCC-CCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          322 NHLVLVDLRPMG-IDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       322 ~~~~~v~~~~~~-~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      ++++|+.++..+ .++.++.+.| +++||.+..+...+...+...+++||++..  .    ++++++..+.|.+..
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~~--~----~~~l~~~l~~l~~~~  384 (387)
T PRK07777        315 TYFLCADPRPLGYDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFCK--R----DDTLDEAIRRLRALR  384 (387)
T ss_pred             ceEEEecccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEecC--C----HHHHHHHHHHHHHHh
Confidence            667777765322 3567777777 578999965432111111124589998752  3    778877777776543

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.92  E-value=1.4e-22  Score=201.70  Aligned_cols=330  Identities=18%  Similarity=0.192  Sum_probs=218.4

Q ss_pred             EecCCCCC----CHHHHHHHhhhhhccCCCCCCCCcccCc-hhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHH
Q 013217           25 LIASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN   99 (447)
Q Consensus        25 l~~~~n~~----~~~v~~a~~~~~~~~~~~g~~~~~~~~g-~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~   99 (447)
                      ...|.+|+    .|+|++++...+. +|..+..+.+...+ .+...++|    +++++++|.+.     .+.++||+.||
T Consensus        49 ~~~sn~ylgl~~~p~v~~a~~~~~~-~~~~~~~~s~~~~~~~~~~~~le----~~la~~~g~~~-----~~~~~SG~~An  118 (406)
T PRK13393         49 VWCSNDYLGMGQHPAVLAAMHEALD-TCGAGAGGTRNISGTNHYHVLLE----AELADLHGKEA-----ALLFTSGYVSN  118 (406)
T ss_pred             EeecccccCCCCCHHHHHHHHHHHH-HcCCCCcccccccCChHHHHHHH----HHHHHHhCCCc-----EEEeCCcHHHH
Confidence            45677775    6899999988875 45555445544323 33445555    68899999754     34569999999


Q ss_pred             HHHHHHhcC--CCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhh---hCCcEEE
Q 013217          100 FEVYTAILK--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---FRPKLII  174 (447)
Q Consensus       100 ~~~~~al~~--pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~---~~~klii  174 (447)
                      ..++.++.+  +||.|+.....|++.+.        .+...|.  +...++      ..|++++++.++.   .++++|+
T Consensus       119 ~~ai~~l~~~~~g~~I~~~~~~H~s~~~--------~~~~~g~--~~~~~~------~~d~~~l~~~l~~~~~~~~~~v~  182 (406)
T PRK13393        119 WAALSTLGSRLPGCVILSDELNHASMIE--------GIRHSRA--EKRIFR------HNDPADLERKLSDLDPHRPKLVA  182 (406)
T ss_pred             HHHHHHhhcCCCCCEEEEccchhHHHHH--------HHHHcCC--eEEEeC------CCCHHHHHHHHHhccCCCCEEEE
Confidence            999988765  88888877777766542        1223343  222322      2477888877753   2567888


Q ss_pred             EcCCCCC-C-CCChHHHHHHHHHhCCEEEEehhhhcccccc-c--cCC-CCC-CcccEEEeCCCcccCCCCCceEEeecC
Q 013217          175 AGASAYP-R-DFDYPRMRQIADAVGALLMMDMAHISGLVAA-S--VVA-DPF-KYCDVVTTTTHKSLRGPRGGMIFFKKD  247 (447)
Q Consensus       175 ~~~~~~~-~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~-~--~~~-~~~-~~~Di~~~s~~K~l~Gp~gG~i~~~~~  247 (447)
                      +++++++ + ..|+++|.++|+++|+++++|++|+.|+... +  ... ..+ +..|+++.|++|.+++ .||++++++ 
T Consensus       183 ~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~-~GG~~~~~~-  260 (406)
T PRK13393        183 FESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGV-MGGYITGSA-  260 (406)
T ss_pred             EcCCCCCCCchhCHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhcc-cCceeeCCH-
Confidence            8755444 3 7799999999999999999999998776432 1  110 111 1358898999999854 568888776 


Q ss_pred             CcchhhHHHHhhhccCCCC-CCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEE
Q 013217          248 PVLGVELESAINNAVFPGL-QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVL  326 (447)
Q Consensus       248 ~~~~~~~~~~i~~~~~~~~-~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~  326 (447)
                           ++.+.+.....+.. .++.+....++..++++.+....  ....+..++.+++.+.|.+.|++++.+  ...++.
T Consensus       261 -----~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~~~--~~~~~~~~~~~~l~~~L~~~g~~~~~~--~~~i~~  331 (406)
T PRK13393        261 -----ALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKASS--AERERHQDRVARLRARLDKAGIPHLPN--PSHIVP  331 (406)
T ss_pred             -----HHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHhhCH--HHHHHHHHHHHHHHHHHHHcCCCcCCC--CCCeEE
Confidence                 66666655433322 33445555566666787664332  224566788899999998888876542  233444


Q ss_pred             ecCCCCCCCHHHHHHHHhh-cCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          327 VDLRPMGIDGARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       327 v~~~~~~~~~~~~~~~L~~-~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      +.+.. ..+..++.+.|.+ +||.++....|..  |...++||++++.+++    ++|++++++.|++++...
T Consensus       332 v~~~~-~~~~~~l~~~L~~~~Gi~v~~~~~p~~--p~g~~~iRis~~~~~t----~edid~l~~~l~~~~~~~  397 (406)
T PRK13393        332 VMVGD-PVLCKQISDELLDRYGIYVQPINYPTV--PRGTERLRITPSPLHT----DADIEHLVQALSEIWARL  397 (406)
T ss_pred             EEeCC-HHHHHHHHHHHHHhCCEEEEeECCCCC--CCCCceEEEEECCCCC----HHHHHHHHHHHHHHHHhc
Confidence            43321 1234567777765 6999976433321  2234689999999988    999999999999887643

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=99.92  E-value=1.8e-23  Score=195.45  Aligned_cols=301  Identities=18%  Similarity=0.129  Sum_probs=195.0

Q ss_pred             CCCHHHHHHHHHHHHHhhcCee-EecCCC--CCCHHHHHHHhhhhhcc-CCCCCCCCcccCchhHHHHHHHHHHHHHHHH
Q 013217            3 ACNPEVCEIITKEKERQFKSLE-LIASEN--FTSRAVMEAVGSCLTNK-YSEGLPGKRYYGGNEYIDELETLCQKRALAA   78 (447)
Q Consensus         3 ~~~~~~~~~~~~e~~~~~~~i~-l~~~~n--~~~~~v~~a~~~~~~~~-~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~   78 (447)
                      ...|.||..+.+-..... ..+ |=.+..  ..|.-|.+++....... ..+++++   ||-.    ++.+..++.++++
T Consensus        14 ~~~~~vw~e~~~la~e~~-~~~~LgqGfp~~~~P~fv~ea~~~~~~~~~~~qYt~~---~G~p----~L~~aL~k~~se~   85 (420)
T KOG0257|consen   14 TSKPYVWTEINRLAAEHK-VPNPLGQGFPDFPPPKFVTEAAKNAAKEPSTNQYTRG---YGLP----QLRKALAKAYSEF   85 (420)
T ss_pred             ccCCcHHHHHHHHHHhcC-CCCcccCCCCCCCCcHHHHHHHHHHhccchhcccccc---CCch----HHHHHHHHHHHHH
Confidence            445666666664322222 122 444443  35677777776654331 1111222   2323    3333445677887


Q ss_pred             cCCCCCccceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecc-----cCCC
Q 013217           79 FNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR-----LDES  152 (447)
Q Consensus        79 ~g~~~~~~~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~  152 (447)
                      +|....-- -.|.+|+|+ +++..++++++++||+|++.+|.+.+++.        .+.+.|....+++..     ....
T Consensus        86 ~~~~~~~~-~eVlVT~GA~~ai~~~~~~l~~~GDeVii~eP~fd~Y~~--------~~~maG~tpv~v~~~~~~g~~~s~  156 (420)
T KOG0257|consen   86 YGGLLDPD-DEVLVTAGANEAISSALLGLLNPGDEVIVFEPFFDCYIP--------QVVMAGGTPVFVPLKPKEGNVSSS  156 (420)
T ss_pred             hccccCCc-ccEEEecCchHHHHHHHHHHcCCCCEEEEecCcchhhhh--------HHhhcCCcceeeccccccccccCc
Confidence            87652100 245669998 89999999999999999999998877643        345667644555443     1135


Q ss_pred             CCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhcccccccc-CCC--CCC---
Q 013217          153 TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASV-VAD--PFK---  221 (447)
Q Consensus       153 ~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~~--~~~---  221 (447)
                      ++.+|+++++.++.+ |||+|++++|+||+  ..   .+++|++||++||+++|+|+++ .-+++.+. +..  .++   
T Consensus       157 ~~~~D~~~le~~~t~-kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevY-e~~v~d~~~h~r~aslPgm~  234 (420)
T KOG0257|consen  157 DWTLDPEELESKITE-KTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVY-EWLVYDGNKHIRIASLPGMY  234 (420)
T ss_pred             cccCChHHHHhhccC-CccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHh-HHHhhCCCcceeeecCCchh
Confidence            689999999999998 99999999999986  33   5889999999999999999994 55565553 221  112   


Q ss_pred             cccEEEeCCCccc--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc---Ch---hH-HH
Q 013217          222 YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ---SP---EF-KV  292 (447)
Q Consensus       222 ~~Di~~~s~~K~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~---~~---~~-~~  292 (447)
                      ...+.++|++|++  .|||-||+++++      .+...............+...+ .|.+.|+...+   ++   .+ .+
T Consensus       235 ertitvgS~gKtf~~TGWrlGW~igp~------~L~~~~~~vh~~~~~~~~Tp~q-~A~a~a~~~~~~~~~p~~~y~~~~  307 (420)
T KOG0257|consen  235 ERTITVGSFGKTFGVTGWRLGWAIGPK------HLYSALFPVHQNFVFTCPTPIQ-EASAAAFALELACLQPGGSYFITE  307 (420)
T ss_pred             heEEEeccccceeeeeeeeeeeeechH------HhhhhHHHHhhccccccCcHHH-HHHHHHHhhhhhccCCcchhHHHH
Confidence            2457889999997  699999999955      4444433321111111222222 22233333222   12   23 44


Q ss_pred             HHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCC
Q 013217          293 YQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLR  330 (447)
Q Consensus       293 ~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~  330 (447)
                      +.+.+.++++.|.+.|.+.|+++..+ ..++++|+|++
T Consensus       308 ~~~~y~~krdil~k~L~~lg~~v~~p-~gayyl~adfs  344 (420)
T KOG0257|consen  308 LVKEYKEKRDILAKALEELGLKVTGP-EGAYYLWADFS  344 (420)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCccccC-CCceEEEEecc
Confidence            88999999999999999999998654 56788899987

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.92  E-value=7.3e-24  Score=206.76  Aligned_cols=282  Identities=18%  Similarity=0.109  Sum_probs=193.7

Q ss_pred             chhHHHHHHHHHHHHHHHHcCCC-CCccceeeecCCcHHHHHHHHHHhcC------------CC--CEEEEecCCCCccc
Q 013217           60 GNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVYTAILK------------PH--DRIMGLDLPHGGHL  124 (447)
Q Consensus        60 g~~~~~~le~~~~~~~~~~~g~~-~~~~~~~v~~~sGs~a~~~~~~al~~------------pg--d~Vl~~~~~~~~~~  124 (447)
                      ......++|+.+++++++++|++ .+..  .+.+++|++||..++.++..            +|  +.|++.++.|.++.
T Consensus        32 ~~~~~~~le~~~~~~~~~~~g~~~~~~~--~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~  109 (345)
T cd06450          32 ESPAATEMEAEVVNWLAKLFGLPSEDAD--GVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVE  109 (345)
T ss_pred             cCchhHHHHHHHHHHHHHHhCCCCCCCC--EEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHH
Confidence            33456788999999999999986 3222  23456667999988887742            33  36777777766542


Q ss_pred             CCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh-----CCcEEEEcCCCCC-C-CCChHHHHHHHHHhC
Q 013217          125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIAGASAYP-R-DFDYPRMRQIADAVG  197 (447)
Q Consensus       125 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~-----~~klii~~~~~~~-~-~~~~~~i~~ia~~~g  197 (447)
                      .        .+...|.  +++.+++++ ++.+|+++|++++++.     +|++|+++.++++ + ..|+++|.++|+++|
T Consensus       110 ~--------~~~~~g~--~~~~v~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~  178 (345)
T cd06450         110 K--------AAAYLDV--KVRLVPVDE-DGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYD  178 (345)
T ss_pred             H--------HHHHHhc--CeEEeeeCC-CCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhC
Confidence            1        2233344  455555653 4589999999998752     6778777755544 3 779999999999999


Q ss_pred             CEEEEehhhhccccccccCC---CCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhccCCCCCCCCcHH
Q 013217          198 ALLMMDMAHISGLVAASVVA---DPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNH  273 (447)
Q Consensus       198 ~~livD~a~~~g~~~~~~~~---~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~  273 (447)
                      +++++|++|+.+........   ..+.++|++++|+|||+.+|.| |+++++                            
T Consensus       179 ~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~----------------------------  230 (345)
T cd06450         179 LWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR----------------------------  230 (345)
T ss_pred             CeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHHHHHH----------------------------
Confidence            99999999977765332111   1123589999999999988776 765432                            


Q ss_pred             HHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCCCCeeEEecCCCC---CCCHHHHHHHHhhcCeE
Q 013217          274 TIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLVLVDLRPM---GIDGARVEKILDMASIT  349 (447)
Q Consensus       274 ~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~L~~~gI~  349 (447)
                       ..+++.+++.+...++++..++..+.++++.+.|.+. +++++.+ .+..++.+.+.+.   +++..++.+.|.++|+.
T Consensus       231 -~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~iv~f~~~~~~~~~~~~~~i~~~L~~~g~~  308 (345)
T cd06450         231 -ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELLGE-PNLSLVCFRLKPSVKLDELNYDLSDRLNERGGW  308 (345)
T ss_pred             -HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-CceeEEEEEECCcchhhHHHHHHHHHHHhcCCE
Confidence             3344556666666678888999999999999999884 7777643 2344455554432   34556788889888654


Q ss_pred             EccCCCCCCCCCCCCCeEEEecCcc-ccCCCCHHHHHHHHHHHHH
Q 013217          350 LNKNSVPGDKSALVPGGIRIGSPAM-TTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       350 v~~~~~p~~~~~~~~~~iRig~~~~-~~~g~~~~di~~l~~~i~~  393 (447)
                      +...    ...+ .+..+|++++.. |+    ++|++++++.|++
T Consensus       309 ~~~~----~~~~-~~~~lRis~~~~~~t----~~di~~l~~~l~~  344 (345)
T cd06450         309 HVPA----TTLG-GPNVLRFVVTNPLTT----RDDADALLEDIER  344 (345)
T ss_pred             EEEe----eEEC-CeEEEEEEecCCCCC----HHHHHHHHHHHHh
Confidence            4221    1101 245899998875 46    9999999998865

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.92  E-value=4.1e-23  Score=201.51  Aligned_cols=314  Identities=18%  Similarity=0.169  Sum_probs=211.5

Q ss_pred             cCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-H
Q 013217           21 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P   97 (447)
Q Consensus        21 ~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~   97 (447)
                      ..|+|..++|.  +||.+++++...+...  .+|+..      . ..++    ++.+++++++++++    |.+++|+ +
T Consensus        20 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~--~~y~~~------~-~~~l----r~~ia~~~~~~~~~----i~~~~G~~~   82 (346)
T TIGR01141        20 EVIKLNSNENPFGPPPKAKEALRAEADKL--HRYPDP------D-PAEL----KQALADYYGVDPEQ----ILLGNGSDE   82 (346)
T ss_pred             ceEEccCCCCCCCCCHHHHHHHHHhHHHh--hcCCCC------C-HHHH----HHHHHHHhCcChHH----EEEcCCHHH
Confidence            45778777764  5788999998765321  223221      1 1234    46788889987653    4447776 7


Q ss_pred             HHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcC
Q 013217           98 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA  177 (447)
Q Consensus        98 a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~  177 (447)
                      ++..++.+++++||+|++.+|.|+.+..        .....|.  +++.+++++ ++.+|++++++.+.+ ++++|+++.
T Consensus        83 ~l~~~~~~l~~~gd~v~~~~p~y~~~~~--------~~~~~g~--~~~~~~~~~-~~~~d~~~l~~~~~~-~~~~v~l~~  150 (346)
T TIGR01141        83 IIELLIRAFLEPGDAVLVPPPTYSMYEI--------SAKIHGA--EVVKVPLDE-DGQLDLEDILVAIDD-KPKLVFLCS  150 (346)
T ss_pred             HHHHHHHHhcCCCCEEEEcCCCHHHHHH--------HHHHcCC--eEEEeccCC-CCCCCHHHHHHhcCC-CCCEEEEeC
Confidence            8888888999999999999987654311        1223343  555666663 478999999998765 899999987


Q ss_pred             CCCCC--CCChHHHHHHHHHh--CCEEEEehhhhccccccccCCCCCC--cccEEEeCCCccc--CCCCCceEEeecCCc
Q 013217          178 SAYPR--DFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL--RGPRGGMIFFKKDPV  249 (447)
Q Consensus       178 ~~~~~--~~~~~~i~~ia~~~--g~~livD~a~~~g~~~~~~~~~~~~--~~Di~~~s~~K~l--~Gp~gG~i~~~~~~~  249 (447)
                      ++||+  ..+.+++.++|+.+  |+++++|++|. ++...+.......  ..+++++|+||++  +|+|.|++++++   
T Consensus       151 p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~-~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~---  226 (346)
T TIGR01141       151 PNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYG-EFSGEPSTLPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANA---  226 (346)
T ss_pred             CCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchh-hhcCCccHHHHHhhCCCEEEEehhhHhhhchhhhceeeecCH---
Confidence            77776  78999999999887  99999999975 3332210000000  1347789999998  367779999987   


Q ss_pred             chhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCCCCeeEEec
Q 013217          250 LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLVLVD  328 (447)
Q Consensus       250 ~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~v~  328 (447)
                         ++.+.+.....+.   +.+.....+...+++..  ..+++..+++.++++.+.+.|++. |+++..+  ...++|++
T Consensus       227 ---~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~--~g~~~~~~  296 (346)
T TIGR01141       227 ---EIIDALNKVRAPF---NLSRLAQAAAIAALRDD--DFIEKTVEEINAERERLYDGLKKLPGLEVYPS--DANFVLIR  296 (346)
T ss_pred             ---HHHHHHHhccCCC---CCCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHhcCCCEECCC--cCCEEEEe
Confidence               6777776543222   22333333333334322  135677888889999999999885 8876542  34567777


Q ss_pred             CCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217          329 LRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  391 (447)
Q Consensus       329 ~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i  391 (447)
                      +..   +.+++.+.|.++||.+..+...+   .. ++.+|++++   +    ++|++++++.|
T Consensus       297 ~~~---~~~~~~~~L~~~gI~v~~g~~f~---~~-~~~iRls~~---~----~~~i~~~~~~l  345 (346)
T TIGR01141       297 FPR---DADALFEALLEKGIIVRDLNSYP---GL-PNCLRITVG---T----REENDRFLAAL  345 (346)
T ss_pred             cCC---CHHHHHHHHHHCCeEEEeCCCcC---CC-CCeEEEecC---C----HHHHHHHHHHh
Confidence            753   56888889989999996532111   11 568999954   4    89999998876

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.92  E-value=5.7e-22  Score=196.22  Aligned_cols=331  Identities=15%  Similarity=0.124  Sum_probs=210.7

Q ss_pred             cCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCcH
Q 013217           21 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGS   96 (447)
Q Consensus        21 ~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sGs   96 (447)
                      +.++|..+++.  +++.+.+++...+.......|+..      .....+.+.+.+++.+.+|.+  +++   +|.+|+|+
T Consensus        32 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~------~G~~~lr~aia~~~~~~~g~~~~~~~---~ii~t~G~  102 (385)
T PRK09276         32 DVISLGIGDPDLPTPDHIIEAMCKAVEDPENHQYPSY------EGMLEFRKAVADWYKRRFGVELDPET---EVISLIGS  102 (385)
T ss_pred             CEEEecCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCC------CCcHHHHHHHHHHHHHHhCCCCCCCC---cEEEccCc
Confidence            45788777764  467888888776643211233322      112345555556777666753  331   24457887


Q ss_pred             -HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-CCCCCHHHHHHHhhhhCCcEEE
Q 013217           97 -PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLII  174 (447)
Q Consensus        97 -~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~~~~~~~klii  174 (447)
                       +++..++.++++|||+|++.+|.|+.+..        .....|.  +++.++++.+ ++.+|++++++.+.+ ++++|+
T Consensus       103 ~~~i~~~~~~~~~~gd~Vl~~~P~y~~~~~--------~~~~~g~--~~~~v~~~~~~g~~~d~~~l~~~~~~-~~~~v~  171 (385)
T PRK09276        103 KEGIAHIPLAFVNPGDVVLVPDPGYPVYKI--------GTIFAGG--EPYFMPLKEENGFLPDLDAIPEDVAK-KAKLMF  171 (385)
T ss_pred             HHHHHHHHHHhCCCCCEEEEcCCCCcChHH--------HHHHcCC--EEEEEecCCCCCCcCCHHHHHHhccc-cceEEE
Confidence             88888899999999999999998765421        2234454  5555556533 456899999988876 899999


Q ss_pred             EcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCC---CC---cccEEEeCCCccc--CCCCCce
Q 013217          175 AGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP---FK---YCDVVTTTTHKSL--RGPRGGM  241 (447)
Q Consensus       175 ~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~---~~---~~Di~~~s~~K~l--~Gp~gG~  241 (447)
                      +++|+||+  ..+   +++|.++|+++|+++++|+++. .+.+.+....+   ++   ...+++.|++|.+  +|.|.|+
T Consensus       172 l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~  250 (385)
T PRK09276        172 INYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYS-EIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGF  250 (385)
T ss_pred             EeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchh-heecCCCCCCChhccCCCcCCEEEEecchhhcCCcchhhee
Confidence            99888886  555   5788889999999999999964 33332211111   11   2347889999987  5777899


Q ss_pred             EEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCC
Q 013217          242 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSD  321 (447)
Q Consensus       242 i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~  321 (447)
                      +++++      ++.+.+......... +.+.....+...++... ....++..+++.++++.+.+.|++.|+++..+ ..
T Consensus       251 ~i~~~------~l~~~~~~~~~~~~~-~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~  321 (385)
T PRK09276        251 AVGNA------DLIAGLGKVKSNVDS-GVFQAIQEAGIAALNGP-QEVVEELRKIYQERRDILVEGLRKLGLEVEPP-KA  321 (385)
T ss_pred             eeCCH------HHHHHHHHHHhhccC-CCCHHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-Cc
Confidence            99887      677766553322112 22222223333344321 22346667777888899999999888876543 34


Q ss_pred             CeeEEecCCCCCCCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217          322 NHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  391 (447)
Q Consensus       322 ~~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i  391 (447)
                      +.++|+++.. +++..++.+.| +++||.+..+...+   ...++++||++.  ..    ++++....+.|
T Consensus       322 ~~~~~v~~~~-~~~~~~l~~~ll~~~gi~v~~g~~f~---~~~~~~~Ris~~--~~----~~~l~~~l~~l  382 (385)
T PRK09276        322 TFYVWAPVPK-GYTSAEFATLLLDKAGVVVTPGNGFG---EYGEGYFRIALT--VP----DERIEEAVERI  382 (385)
T ss_pred             ceEEEEECCC-CCCHHHHHHHHHHhCCEEECCchhhC---CCCCCeEEEEeC--CC----HHHHHHHHHHH
Confidence            5667888753 45677776665 57899996532111   112458999974  22    56655555544

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.92  E-value=1.2e-23  Score=205.34  Aligned_cols=328  Identities=15%  Similarity=0.100  Sum_probs=207.4

Q ss_pred             eeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCc-ccC---chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHH
Q 013217           23 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKR-YYG---GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA   98 (447)
Q Consensus        23 i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~-~~~---g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a   98 (447)
                      +++.|++..+|+.|++++..++.+ |.  +++.. |..   ..++.+.++ .+++.++++||++.++. +.+...|||.+
T Consensus         1 ~~~~pGp~~~p~~V~~a~~~~~~~-~~--~~~rg~~~~~~r~~~~~~~~~-~~r~~l~~l~~~~~~~~-vvf~~gs~T~a   75 (355)
T cd00611           1 INFSAGPAALPEEVLEQAQKELLD-FN--GLGMSVMEMSHRSKDFEAIVN-EAESDLRELLNIPDNYK-VLFLQGGATGQ   75 (355)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHhh-cc--cCCccccccCCCCHHHHHHHH-HHHHHHHHHhCCCCCce-EEEEcCCchHH
Confidence            467899999999999999998754 32  33321 111   234445554 68899999999843322 22333557899


Q ss_pred             HHHHHHHhcC---CCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCC-HHHHHHHhhhhCCcEEE
Q 013217           99 NFEVYTAILK---PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVD-YDMLEKTAILFRPKLII  174 (447)
Q Consensus        99 ~~~~~~al~~---pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id-~~~l~~~~~~~~~klii  174 (447)
                      +.+++.+++.   +||+|++..      +.+.+.   ...+..|..++.++  .+++....+ ++..+..+++ ++++|.
T Consensus        76 ~~~~~~~l~~~~~~~~~i~~g~------~~~~~~---~~a~~~g~~~~~~~--~~~~g~~~~~~~~~~~~~~~-~~~lV~  143 (355)
T cd00611          76 FAAVPLNLLGDKGTADYVVTGA------WSAKAA---KEAKRYGGVVVIVA--AKEEGKYTKIPDVETWDLAP-DAAYVH  143 (355)
T ss_pred             HHHHHHhcCCCCCeEEEEECCH------HHHHHH---HHHHhcCCCcEEEe--cccccCCCCCCCHhhcCCCC-CCCEEE
Confidence            9999999987   555555422      111110   01122344344444  332211223 2222233444 899998


Q ss_pred             EcCCCCC-CCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchh
Q 013217          175 AGASAYP-RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGV  252 (447)
Q Consensus       175 ~~~~~~~-~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~  252 (447)
                      +++..+. +.. +   .++++.+|+++++|++|++|.++.++..     .|++++|.||+| ||.| |++++++      
T Consensus       144 ~~h~~t~tG~~-~---~~i~~~~g~~~~VDa~qs~g~~~idv~~-----~~~~~ss~~K~l-GP~G~g~l~~~~------  207 (355)
T cd00611         144 YCSNETIHGVE-F---DEVPDTGGVPLVADMSSNILSRPIDVSK-----FGVIYAGAQKNL-GPAGVTVVIVRK------  207 (355)
T ss_pred             EeCCcccccEE-c---ceecccCCCeEEEEccccccCCCCCHHH-----hCEEEeeccccc-CCCceEEEEECH------
Confidence            8754444 332 2   2455669999999999999977554432     456777799976 7999 9999988      


Q ss_pred             hHHHHhhhc-----------cCCCCCCCCcHHHHHHHHHHHHHhcCh-hHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCC
Q 013217          253 ELESAINNA-----------VFPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVEL-GYKLVSGG  319 (447)
Q Consensus       253 ~~~~~i~~~-----------~~~~~~g~p~~~~~aal~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~  319 (447)
                      +..+++...           ......|||+.+.+.++.+|++++... +++.+.++..+.++++.+.|++. |+......
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~  287 (355)
T cd00611         208 DLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVD  287 (355)
T ss_pred             HHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccccccCCC
Confidence            444333221           001125899999999999999999887 79999999999999999999996 75211111


Q ss_pred             CCCee-EEecCCCCCC-CHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          320 SDNHL-VLVDLRPMGI-DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       320 ~~~~~-~~v~~~~~~~-~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                      ...+. .++.+...+. ...++...+.+.|+...    +++.   ..+.+|+|+..++|    ++|++++.++|+++
T Consensus       288 ~~~rs~~vvsf~~~~~~l~~~~~~~~~r~G~~~~----~~~~---~~g~vR~S~~~~nt----~edi~~l~~al~~~  353 (355)
T cd00611         288 KRARSRMNVPFRLGKEELEKEFLKEAEAAGMIGL----KGHR---SVGGIRASIYNALS----LEGVQALADFMKEF  353 (355)
T ss_pred             HHHcCceEEEEEcCChhhhHHHHHHHHHCCCccc----CCCc---ccCeEEEEccCCCC----HHHHHHHHHHHHHH
Confidence            11122 2233332232 11344456677899632    2222   13579999999999    99999999999874

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.92  E-value=8.9e-23  Score=199.70  Aligned_cols=318  Identities=20%  Similarity=0.187  Sum_probs=215.2

Q ss_pred             hcCeeEecCCCCC--CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-
Q 013217           20 FKSLELIASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-   96 (447)
Q Consensus        20 ~~~i~l~~~~n~~--~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-   96 (447)
                      ++.|+|..++|+.  ++.+++++.+.+.... ..||..    +   ...+    ++.++++++++++    +|.+|+|+ 
T Consensus        24 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~-~~y~~~----~---~~~l----r~aia~~~~~~~~----~I~it~G~~   87 (353)
T PRK05387         24 AKLIKLNTNENPYPPSPKVLEAIRAALGDDL-RLYPDP----N---ADAL----RQAIAAYYGLDPE----QVFVGNGSD   87 (353)
T ss_pred             cceeeccCCCCCCCCCHHHHHHHHHHhhhhh-hcCCCC----c---HHHH----HHHHHHHhCCCHH----HEEEcCCHH
Confidence            3568898888854  6788999887654321 234321    1   1233    4677888898876    34558888 


Q ss_pred             HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 013217           97 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG  176 (447)
Q Consensus        97 ~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~  176 (447)
                      +++..++.++++|||+|++++|.|+.+..        .....|.  +++.++++ +++.+|++++++     ++++|+++
T Consensus        88 ~al~~~~~~l~~~gd~vlv~~P~y~~~~~--------~~~~~g~--~~~~v~~~-~~~~~d~~~l~~-----~~~~v~~~  151 (353)
T PRK05387         88 EVLAHAFLAFFNHDRPLLFPDITYSFYPV--------YAGLYGI--PYEEIPLD-DDFSIDVEDYLR-----PNGGIIFP  151 (353)
T ss_pred             HHHHHHHHHhcCCCCEEEEeCCCHHHHHH--------HHHHcCC--EEEEeecC-CCCCCCHHHHHh-----cCCEEEEe
Confidence            89999999999999999999988754321        1234454  55555565 457899998863     45788888


Q ss_pred             CCCCCC--CCChHHHHHHHHHh-CCEEEEehhhhccccccccCCCCC-C--cccEEEeCCCccc--CCCCCceEEeecCC
Q 013217          177 ASAYPR--DFDYPRMRQIADAV-GALLMMDMAHISGLVAASVVADPF-K--YCDVVTTTTHKSL--RGPRGGMIFFKKDP  248 (447)
Q Consensus       177 ~~~~~~--~~~~~~i~~ia~~~-g~~livD~a~~~g~~~~~~~~~~~-~--~~Di~~~s~~K~l--~Gp~gG~i~~~~~~  248 (447)
                      +|+||+  ..+.+++.++++.+ ++++++|+++. .+.  +....++ .  ...++++|++|++  +|.|.|+++.++  
T Consensus       152 ~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~-~~~--~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~--  226 (353)
T PRK05387        152 NPNAPTGIALPLAEIERILAANPDSVVVIDEAYV-DFG--GESAIPLIDRYPNLLVVQTFSKSRSLAGLRVGFAIGHP--  226 (353)
T ss_pred             CCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCccc-ccC--CcchHHHHhhCCCEEEEEehhHhhcchhhhceeeecCH--
Confidence            888886  77999999999876 99999999963 221  1101111 1  2358899999985  688889999877  


Q ss_pred             cchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEec
Q 013217          249 VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVD  328 (447)
Q Consensus       249 ~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~  328 (447)
                          ++.+.+..........+.+.....++..++..  ...+++..+++.++++.+.+.|++.|+.+..+  ..+++|+.
T Consensus       227 ----~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~~~~~~~~  298 (353)
T PRK05387        227 ----ELIEALNRVKNSFNSYPLDRLAQAGAIAAIED--EAYFEETRAKVIATRERLVEELEALGFEVLPS--KANFVFAR  298 (353)
T ss_pred             ----HHHHHHHHhhccCCCCCcCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCeECCC--cCcEEEEE
Confidence                67777665432211223344333333334432  12346677888889999999999988876532  34556766


Q ss_pred             CCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          329 LRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       329 ~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      +.  +.+..++.+.|.++||.+....   .  +...+.+|+++.   +    +++++++.++|++++.
T Consensus       299 ~~--~~~~~~~~~~l~~~gi~v~~~~---~--~~~~~~iRis~~---~----~~~~~~~~~~L~~~~~  352 (353)
T PRK05387        299 HP--SHDAAELAAKLRERGIIVRHFN---K--PRIDQFLRITIG---T----DEEMEALVDALKEILA  352 (353)
T ss_pred             CC--CCCHHHHHHHHHHCCEEEEECC---C--CCCCCeEEEEeC---C----HHHHHHHHHHHHHHhh
Confidence            54  3467788888999999996321   1  112468999864   3    7899999999988764

>PRK06348 aspartate aminotransferase; Provisional

Probab=99.92  E-value=3.6e-22  Score=197.41  Aligned_cols=333  Identities=12%  Similarity=0.083  Sum_probs=210.0

Q ss_pred             hcCeeEecCCCCC--CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CCCccceeeecCCc
Q 013217           20 FKSLELIASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSG   95 (447)
Q Consensus        20 ~~~i~l~~~~n~~--~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~~~~~v~~~sG   95 (447)
                      ...++|..+++..  ++.+++++...+... ...|+..      .....+.+.+.+++.+.+|.  +++    +|.+|+|
T Consensus        29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~-~~~Y~~~------~G~~~lr~~ia~~~~~~~~~~~~~~----~i~it~G   97 (384)
T PRK06348         29 PDIIDLSLGDPDLITDESIINAAFEDAKKG-HTRYTDS------GGDVELIEEIIKYYSKNYDLSFKRN----EIMATVG   97 (384)
T ss_pred             CCcEEcCCCCCCCCCCHHHHHHHHHHHhcC-CCCCCCC------CCcHHHHHHHHHHHHHHhCCCCChh----hEEEcCC
Confidence            4568887776643  466666554433221 1223322      22234555555667665554  454    4555888


Q ss_pred             H-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhhCCcEE
Q 013217           96 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLI  173 (447)
Q Consensus        96 s-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~~~kli  173 (447)
                      + +++..++.++++|||+|++.+|.|+++..        .+...|.  ++++++.++ +++.+|++++++.+++ ++++|
T Consensus        98 ~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v  166 (384)
T PRK06348         98 ACHGMYLALQSILDPGDEVIIHEPYFTPYKD--------QIEMVGG--KPIILETYEEDGFQINVKKLEALITS-KTKAI  166 (384)
T ss_pred             hHHHHHHHHHHhcCCCCEEEEeCCCCcchHH--------HHHHcCC--EEEEecCCcCcCCcCCHHHHHHhhCc-CccEE
Confidence            7 89999999999999999999998876532        2334454  455555532 4567999999998876 89999


Q ss_pred             EEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCC--CCC---cccEEEeCCCccc--CCCCCce
Q 013217          174 IAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFK---YCDVVTTTTHKSL--RGPRGGM  241 (447)
Q Consensus       174 i~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~--~~~---~~Di~~~s~~K~l--~Gp~gG~  241 (447)
                      +++.++||+  ..   ++++|.++|+++|+++++|+++ .++.+.+....  .+.   ...+++.|++|++  +|.|.|+
T Consensus       167 ~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~  245 (384)
T PRK06348        167 ILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVY-DGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTGWRIGY  245 (384)
T ss_pred             EEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEeccc-ccceeCCCccchhhcCCCcCcEEEEecchhccCCcccccee
Confidence            988888886  44   3688888999999999999995 44443321111  111   2347889999986  5888999


Q ss_pred             EEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCC
Q 013217          242 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGS  320 (447)
Q Consensus       242 i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~  320 (447)
                      +++++      ++.+.+.........+. +.....++..++... ....++..+.+.++++.+.+.|.+. ++.+..+ .
T Consensus       246 ~v~~~------~~~~~~~~~~~~~~~~~-~~~~q~~~~~~l~~~-~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p-~  316 (384)
T PRK06348        246 VIAPD------YIIETAKIINEGICFSA-PTISQRAAIYALKHR-DTIVPLIKEEFQKRLEYAYKRIESIPNLSLHPP-K  316 (384)
T ss_pred             eecCH------HHHHHHHHHHHhccCCC-CHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHhcCCCceeccC-C
Confidence            99987      67776655432222222 222223333344421 1223455666777788888888774 5555432 3


Q ss_pred             CCeeEEecCCCCCCCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217          321 DNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       321 ~~~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~  393 (447)
                      .+.++|++++..+++..++.+.| +++||.+..+...+   ....+++|+++.  .+    ++++++..+.|++
T Consensus       317 gg~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~---~~~~~~iRi~~~--~~----~~~l~~al~~l~~  381 (384)
T PRK06348        317 GSIYAFINIKKTGLSSVEFCEKLLKEAHVLVIPGKAFG---ESGEGYIRLACT--VG----IEVLEEAFNRIEK  381 (384)
T ss_pred             eeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhc---cCCCCeEEEEec--CC----HHHHHHHHHHHHh
Confidence            46667888764456777777765 57899996432221   112468999974  23    6777666666543

>PLN02822 serine palmitoyltransferase

Probab=99.92  E-value=3.6e-22  Score=201.40  Aligned_cols=336  Identities=16%  Similarity=0.165  Sum_probs=218.8

Q ss_pred             cCeeEecCCCC----CCHHHHHHHhhhhhccCCCCCCCCcc-cCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCc
Q 013217           21 KSLELIASENF----TSRAVMEAVGSCLTNKYSEGLPGKRY-YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG   95 (447)
Q Consensus        21 ~~i~l~~~~n~----~~~~v~~a~~~~~~~~~~~g~~~~~~-~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sG   95 (447)
                      ..|+|. +.++    .+|.+.+++...+. +|..|+.+.|. |+..+...++|    ++++++++.+.     .|..++|
T Consensus       110 ~~id~~-s~~~lgl~~~~~i~ea~~~al~-~~G~g~~g~r~~yg~~~~~~~Le----e~La~~~~~~~-----~i~~s~G  178 (481)
T PLN02822        110 DVVNFA-SANYLGLIGNEKIKESCTSALE-KYGVGSCGPRGFYGTIDVHLDCE----TKIAKFLGTPD-----SILYSYG  178 (481)
T ss_pred             eEEEeE-CCCcCCCCCCHHHHHHHHHHHH-HhCCCCcccCccccCHHHHHHHH----HHHHHHhCCCC-----EEEECCH
Confidence            446664 4444    47999999988775 45667777654 45555555665    68899999764     3445788


Q ss_pred             HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhh--------
Q 013217           96 SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL--------  167 (447)
Q Consensus        96 s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~--------  167 (447)
                      ..++.+++.+++++||.|++....|.++.        ..+.+++.  +++.++.+      |.++++..+++        
T Consensus       179 ~~a~~sai~a~~~~gd~Ii~d~~~H~s~~--------~~~~ls~~--~~~~~~~n------d~~~l~~~l~~~~~~~~~~  242 (481)
T PLN02822        179 LSTIFSVIPAFCKKGDIIVADEGVHWGIQ--------NGLYLSRS--TIVYFKHN------DMESLRNTLEKLTAENKRK  242 (481)
T ss_pred             HHHHHHHHHHhCCCCCEEEEeCCccHHHH--------HHHHHcCC--eEEEECCC------CHHHHHHHHHHHhhhhccc
Confidence            77889999999999999998766554431        12334444  44454443      34444443321        


Q ss_pred             hCC-cEEEEcCC--CCCCCCChHHHHHHHHHhCCEEEEehhhhcccccc-c--cC-CCCC--CcccEEEeCCCcccCCCC
Q 013217          168 FRP-KLIIAGAS--AYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA-S--VV-ADPF--KYCDVVTTTTHKSLRGPR  238 (447)
Q Consensus       168 ~~~-klii~~~~--~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~-~--~~-~~~~--~~~Di~~~s~~K~l~Gp~  238 (447)
                      .++ ++|++.+.  +.+...|+++|+++|++||+++++|++|+.|.... +  .. ...+  ...|++++|++|++ |..
T Consensus       243 ~~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKal-g~~  321 (481)
T PLN02822        243 KKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHAL-ATE  321 (481)
T ss_pred             CCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhh-hhC
Confidence            134 57777633  23337899999999999999999999998776532 1  10 0111  24789999999998 466


Q ss_pred             CceEEeecCCcchhhHHHHhhhccCCCCCCC--CcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEe
Q 013217          239 GGMIFFKKDPVLGVELESAINNAVFPGLQGG--PHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKL  315 (447)
Q Consensus       239 gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~--p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  315 (447)
                      ||++++++      ++.+.+......+..++  |.....+++ .+++.+..  ..+..+++.++++.+.+.|.+. |+++
T Consensus       322 GG~i~g~~------~ii~~~~~~~~~~~fsa~lPp~~~~Aa~-~aL~~l~~--~~~~~~~l~~~~~~l~~~L~~~~g~~~  392 (481)
T PLN02822        322 GGFCTGSA------RVVDHQRLSSSGYVFSASLPPYLASAAI-TAIDVLED--NPSVLAKLKENIALLHKGLSDIPGLSI  392 (481)
T ss_pred             CeEEEcCH------HHHHHHHhcCCceeeccccCHHHHHHHH-HHHHHHHh--CHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            79999887      67776654333333333  233333333 47765432  3567889999999999999884 8876


Q ss_pred             eeCCCCCeeEEecCCCC-CC---C---HHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHH
Q 013217          316 VSGGSDNHLVLVDLRPM-GI---D---GARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAI  387 (447)
Q Consensus       316 ~~~~~~~~~~~v~~~~~-~~---~---~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l  387 (447)
                      ..+ ..+.++++.+... +.   +   ..++.+.| .++||.+.....|.-.....+.++|++++..++    ++|++++
T Consensus       393 ~~~-~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t----~edI~~~  467 (481)
T PLN02822        393 GSN-TLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHT----ESDILKA  467 (481)
T ss_pred             CCC-CCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCC----HHHHHHH
Confidence            543 3466666776432 10   1   24566665 588999975322321111123579998777676    9999999


Q ss_pred             HHHHHHHHHHH
Q 013217          388 ADFIHEGVEIT  398 (447)
Q Consensus       388 ~~~i~~~l~~~  398 (447)
                      ++.|++++...
T Consensus       468 ~~~l~~~~~~~  478 (481)
T PLN02822        468 SESLKRVAASV  478 (481)
T ss_pred             HHHHHHHHHHH
Confidence            99999887753

>PLN02656 tyrosine transaminase

Probab=99.92  E-value=2e-22  Score=200.63  Aligned_cols=344  Identities=15%  Similarity=0.068  Sum_probs=217.0

Q ss_pred             hhcCeeEecCCC------CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CCCccceee
Q 013217           19 QFKSLELIASEN------FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNV   90 (447)
Q Consensus        19 ~~~~i~l~~~~n------~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~~~~~v   90 (447)
                      .+..|+|..+++      .+|+.+++++.+.+......+|...      .....+++...+++.+.+|.  +++    +|
T Consensus        30 ~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~------~G~~~lr~~ia~~~~~~~g~~~~~~----~i   99 (409)
T PLN02656         30 GKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFNGYAPT------VGLPQARRAIAEYLSRDLPYKLSLD----DV   99 (409)
T ss_pred             CCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCC------CCCHHHHHHHHHHHHHhcCCCCCcc----cE
Confidence            356788876666      3478999998877664322334221      11234554445566655554  344    34


Q ss_pred             ecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhh
Q 013217           91 QPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILF  168 (447)
Q Consensus        91 ~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~  168 (447)
                      .+++|+ +++..++.++++|||+|++.+|.|+.+..        .....|.  +++.+++++ +++.+|++++++++++ 
T Consensus       100 ~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~i~~~~~~~~~~d~~~l~~~~~~-  168 (409)
T PLN02656        100 FITSGCTQAIDVALSMLARPGANILLPRPGFPIYEL--------CAAFRHL--EVRYVDLLPEKGWEVDLDAVEALADQ-  168 (409)
T ss_pred             EEeCChHHHHHHHHHHHhCCCCeEEEeCCCCCcHHH--------HHHHcCC--EEEEEeCCCcCCCCCCHHHHHHHhcc-
Confidence            457776 89988999999999999999998765421        1233454  445555543 3567999999998876 


Q ss_pred             CCcEEEEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCC---Cc--ccEEEeCCCccc--CC
Q 013217          169 RPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KY--CDVVTTTTHKSL--RG  236 (447)
Q Consensus       169 ~~klii~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~---~~--~Di~~~s~~K~l--~G  236 (447)
                      ++++|+++.|+||+  ..   ++++|.++|+++|+++++|+++ .++.+.+....++   ..  .-+++.|++|++  +|
T Consensus       169 ~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pG  247 (409)
T PLN02656        169 NTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVY-GHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPG  247 (409)
T ss_pred             CceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhh-hhcccCCCCcccHHHhcccCcEEEEcccchhccCcc
Confidence            78888888788886  32   6789999999999999999995 4555433211121   11  237789999984  68


Q ss_pred             CCCceEEeecCCc-c-hhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-Cc
Q 013217          237 PRGGMIFFKKDPV-L-GVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GY  313 (447)
Q Consensus       237 p~gG~i~~~~~~~-~-~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~  313 (447)
                      .|.||++.+++.. . -.++.+++......  .++++.....++..+++......+++..+++.++++.+.+.|++. ++
T Consensus       248 lRiG~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~  325 (409)
T PLN02656        248 WRLGWFVTTDPSGSFRDPKIVERIKKYFDI--LGGPATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKEIPCI  325 (409)
T ss_pred             eeEEEEEEeCcccccccHHHHHHHHHHHhh--hcCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            8889999852100 0 01455555543222  123344444444445543222235667778888888999999875 33


Q ss_pred             EeeeCCCCCeeEEecCCCC---CC-CH-HHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHH
Q 013217          314 KLVSGGSDNHLVLVDLRPM---GI-DG-ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIA  388 (447)
Q Consensus       314 ~~~~~~~~~~~~~v~~~~~---~~-~~-~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~  388 (447)
                      .....+..+.++|+++...   +. +. +.+.+.|.+.||.+..+    .... .++++||++..  +    ++++++..
T Consensus       326 ~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~pg----~~fg-~~~~iRi~~~~--~----~e~l~eal  394 (409)
T PLN02656        326 TCPHKPEGSMAVMVKLNLSLLEDISDDIDFCFKLAREESVIILPG----TAVG-LKNWLRITFAA--D----PSSLEEAL  394 (409)
T ss_pred             cCCcCCCeEEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEecc----hhcC-CCCeEEEEeCC--C----HHHHHHHH
Confidence            3222234466778887421   11 23 34567888999999543    3211 24689999763  3    78888888


Q ss_pred             HHHHHHHHH
Q 013217          389 DFIHEGVEI  397 (447)
Q Consensus       389 ~~i~~~l~~  397 (447)
                      +.|++++..
T Consensus       395 ~rl~~~~~~  403 (409)
T PLN02656        395 GRIKSFYLR  403 (409)
T ss_pred             HHHHHHHHH
Confidence            888777654

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.92  E-value=7.2e-22  Score=196.13  Aligned_cols=334  Identities=16%  Similarity=0.118  Sum_probs=216.2

Q ss_pred             hcCeeEecCCCCC--CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CCCccceeeecCCc
Q 013217           20 FKSLELIASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSG   95 (447)
Q Consensus        20 ~~~i~l~~~~n~~--~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~~~~~v~~~sG   95 (447)
                      .+.++|..+++..  ++.+.+++...+.+. ...|+.      ......+++...+++.+.+|.  ++++    +.+++|
T Consensus        31 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~~------~~g~~~lr~~ia~~~~~~~~~~~~~~~----i~~~~g   99 (393)
T PRK05764         31 RDVISLGAGEPDFDTPEHIKEAAIEALDDG-KTKYTP------AAGIPELREAIAAKLKRDNGLDYDPSQ----VIVTTG   99 (393)
T ss_pred             CCEEEeCCCCCCCCCCHHHHHHHHHHHhcC-CCCcCC------CCChHHHHHHHHHHHHHHhCCCCCHHH----EEEeCC
Confidence            4557777666643  588888887776542 122332      222345655555566665554  4443    334666


Q ss_pred             H-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhhCCcEE
Q 013217           96 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLI  173 (447)
Q Consensus        96 s-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~~~kli  173 (447)
                      + +|+..++.+++++||+|++.+|.|+++..        .+...|.  +++.++.++ +++.+|++++++++++ ++++|
T Consensus       100 ~~~a~~~~~~~~~~~gd~vl~~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v  168 (393)
T PRK05764        100 AKQALYNAFMALLDPGDEVIIPAPYWVSYPE--------MVKLAGG--VPVFVPTGEENGFKLTVEQLEAAITP-KTKAL  168 (393)
T ss_pred             cHHHHHHHHHHhcCCCCEEEecCCCCcchHH--------HHHHcCC--EEEEEecCcccCCcCCHHHHHHhhCc-cceEE
Confidence            5 89999999999999999999988776431        2234454  555555653 3467999999999876 88999


Q ss_pred             EEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCC-------CcccEEEeCCCccc--CCCCC
Q 013217          174 IAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-------KYCDVVTTTTHKSL--RGPRG  239 (447)
Q Consensus       174 i~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~-------~~~Di~~~s~~K~l--~Gp~g  239 (447)
                      +++.++||+  ..   ++++|.++|+++|+++++|+++. .+...+....++       ...++++.|++|++  +|.|.
T Consensus       169 ~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~Ri  247 (393)
T PRK05764        169 ILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYE-KLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRL  247 (393)
T ss_pred             EEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEecccc-ceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCcccee
Confidence            888788775  33   47899999999999999999863 333322110111       12568899999986  56677


Q ss_pred             ceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeC
Q 013217          240 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSG  318 (447)
Q Consensus       240 G~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~  318 (447)
                      |+++.++      ++.+.+......... +++.....+...++.. .....++..+++.++++.+.+.|++. |+.+..+
T Consensus       248 G~i~~~~------~~~~~~~~~~~~~~~-~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~  319 (393)
T PRK05764        248 GYAAGPK------ELIKAMSKLQSHSTS-NPTSIAQYAAVAALNG-PQDEVEEMRQAFEERRDLMVDGLNEIPGLECPKP  319 (393)
T ss_pred             EEEecCH------HHHHHHHHHHhhccc-CCChHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCC
Confidence            9999877      677766554322222 2233332333334432 12334566777788888899999886 8876543


Q ss_pred             CCCCeeEEecCCCCC----CCHHHHHHH-HhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217          319 GSDNHLVLVDLRPMG----IDGARVEKI-LDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       319 ~~~~~~~~v~~~~~~----~~~~~~~~~-L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~  393 (447)
                       ..++++|+++....    .+..++.+. ++++||.+..+    ..... .+++|+++.  ++    ++++++.++.|.+
T Consensus       320 -~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g----~~f~~-~~~vRis~~--~~----~~~~~~~i~~l~~  387 (393)
T PRK05764        320 -EGAFYVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPG----IAFGA-PGYVRLSYA--TS----LEDLEEGLERIER  387 (393)
T ss_pred             -CcceEEEEecccccccccCCHHHHHHHHHHhCCEEEccc----cccCC-CCEEEEEec--CC----HHHHHHHHHHHHH
Confidence             34566777775421    123566655 46789998543    22111 468999864  23    8999999999988


Q ss_pred             HHH
Q 013217          394 GVE  396 (447)
Q Consensus       394 ~l~  396 (447)
                      +++
T Consensus       388 ~~~  390 (393)
T PRK05764        388 FLE  390 (393)
T ss_pred             HHH
Confidence            775

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.92  E-value=5.7e-22  Score=202.85  Aligned_cols=340  Identities=15%  Similarity=0.091  Sum_probs=208.5

Q ss_pred             hcCeeEecCCC-----CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHc--CCCCCccceeeec
Q 013217           20 FKSLELIASEN-----FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF--NLDENKWGVNVQP   92 (447)
Q Consensus        20 ~~~i~l~~~~n-----~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~--g~~~~~~~~~v~~   92 (447)
                      +..|+|..++.     .+|+.+.+++...+..  ..+|+..      .....+.+.+.+++.+..  +++++    +|.+
T Consensus       146 ~~~i~l~~G~p~~~~~~~p~~~~~~~~~~~~~--~~~Y~~~------~G~~~lReaia~~~~~~~~~~~~~~----~I~i  213 (517)
T PRK13355        146 THILKLNIGNPAPFGFRTPDEVVYDMAQQLTD--TEGYSDS------KGLFSARKAIMQYAQLKGLPNVDVD----DIYT  213 (517)
T ss_pred             CCeEEecCcCCCcCCCCCCHHHHHHHHHHhhc--CCCCCCC------cChHHHHHHHHHHHHhcCCCCCChh----HEEE
Confidence            35678876443     2488899988776543  2244433      222344433334444433  34554    4556


Q ss_pred             CCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-CCCCCHHHHHHHhhhhCC
Q 013217           93 LSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRP  170 (447)
Q Consensus        93 ~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~~~~~~~  170 (447)
                      ++|+ +++..++.++++|||+|++++|.|..+..        .+...|.  +++.++++++ ++.+|++++++++++ ++
T Consensus       214 t~G~~eal~~~~~~l~~~Gd~Vli~~P~y~~y~~--------~~~~~g~--~~v~~~~~~~~~~~~d~~~l~~~~~~-~~  282 (517)
T PRK13355        214 GNGVSELINLSMSALLDDGDEVLIPSPDYPLWTA--------CVNLAGG--TAVHYRCDEQSEWYPDIDDIRSKITS-RT  282 (517)
T ss_pred             eCcHHHHHHHHHHHhCCCCCEEEEcCCCCcCHHH--------HHHHCCC--EEEEeecCcccCCCCCHHHHHHhcCc-Cc
Confidence            8887 88888999999999999999998765431        2344554  5556666643 578999999999877 89


Q ss_pred             cEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC-C-ccc---EEEeCCCccc--CCCC
Q 013217          171 KLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-K-YCD---VVTTTTHKSL--RGPR  238 (447)
Q Consensus       171 klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~-~-~~D---i~~~s~~K~l--~Gp~  238 (447)
                      |+|+++.|+||+  ..+   +++|.++|++||+++|+|+++ ..+.+.+....++ . ..+   +++.|++|++  +|+|
T Consensus       283 k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y-~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~~~~G~R  361 (517)
T PRK13355        283 KAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIY-DRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHMIAGYR  361 (517)
T ss_pred             eEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhh-hhhcCCCCCcccHHHhCCCCeEEEEecchhhccCcccc
Confidence            999998888886  555   788999999999999999995 4544433211111 1 112   3458999984  7999


Q ss_pred             CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHH---HHHHHHHHHHHHHHHHHC-CcE
Q 013217          239 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY---QNKVVSNCRALASRLVEL-GYK  314 (447)
Q Consensus       239 gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~---~~~~~~~~~~l~~~L~~~-g~~  314 (447)
                      .||++.+.......++.+.+....... .+ ++.....+...++...  ..+.++   ..++.++++.+.+.|.+. |++
T Consensus       362 iG~~i~~~~~~~~~~~~~~l~~~~~~~-~~-~~~~~q~a~~~aL~~~--~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~  437 (517)
T PRK13355        362 IGWMILSGNKRIAKDYIEGLNMLANMR-LC-SNVPAQSIVQTALGGH--QSVKDYLVPGGRVYEQRELVYNALNAIPGIS  437 (517)
T ss_pred             eEEEEeeCchhhHHHHHHHHHHHhcCc-CC-cChHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            999986521100002333333221111 12 2333333333444321  112222   234566678888888875 877


Q ss_pred             eeeCCCCCeeEEecCCCCC---C-CHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHH
Q 013217          315 LVSGGSDNHLVLVDLRPMG---I-DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADF  390 (447)
Q Consensus       315 ~~~~~~~~~~~~v~~~~~~---~-~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~  390 (447)
                      +..+ ..++++|+++....   . +.+.+.+.|.++||.+..+...+   ...++++|+++.  ..    ++++++.++.
T Consensus       438 ~~~p-~g~fy~~~~l~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~---~~~~~~~Ris~~--~~----~~~l~~a~~r  507 (517)
T PRK13355        438 AVKP-KAAFYIFPKIDVKKFNIHDDEQFALDLLHDKKVLIVQGTGFN---WDKPDHFRVVYL--PR----LEDLEDAMDR  507 (517)
T ss_pred             cCCC-CeeeEEEeecCcccCCCCCHHHHHHHHHHhCCEEEeCcchhC---CCCcCEEEEEeC--CC----HHHHHHHHHH
Confidence            6553 45666776764321   1 23456678889999995432221   113568999973  33    7888888888


Q ss_pred             HHHHHHH
Q 013217          391 IHEGVEI  397 (447)
Q Consensus       391 i~~~l~~  397 (447)
                      |.+.+..
T Consensus       508 l~~~~~~  514 (517)
T PRK13355        508 LADFFSY  514 (517)
T ss_pred             HHHHHHH
Confidence            8777653

>PRK07683 aminotransferase A; Validated

Probab=99.92  E-value=7.2e-22  Score=195.41  Aligned_cols=336  Identities=13%  Similarity=0.097  Sum_probs=215.9

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CCCccceeeecCCc
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSG   95 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~~~~~v~~~sG   95 (447)
                      .+.+.|-.+.+.  .++.+.+++.+.+.+.+ .+|+..      +....+++...+++.+.+|.  +++   .+|..++|
T Consensus        28 ~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~-~~Y~~~------~g~~~lr~~ia~~l~~~~g~~~~~~---~~I~~t~G   97 (387)
T PRK07683         28 DNLISLTIGQPDFPTPSHVKEAAKRAITENY-TSYTHN------AGLLELRKAACNFVKDKYDLHYSPE---SEIIVTIG   97 (387)
T ss_pred             CCeEEecCCCCCCCCCHHHHHHHHHHHhcCC-CCCCCC------CCCHHHHHHHHHHHHHHhCCCCCCC---CcEEEeCC
Confidence            456788766552  35788888888776432 233321      22345665555666655565  343   03445777


Q ss_pred             H-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEE
Q 013217           96 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII  174 (447)
Q Consensus        96 s-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii  174 (447)
                      + +|+..++.+++++||+|++++|.|.++..        .+...|.  +++.++.+.+++.+|.+++++.+.+ ++++|+
T Consensus        98 ~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~i~  166 (387)
T PRK07683         98 ASEAIDIAFRTILEPGTEVILPAPIYPGYEP--------IIRLCGA--KPVFIDTRSTGFRLTAEALENAITE-KTRCVV  166 (387)
T ss_pred             hHHHHHHHHHHhCCCCCEEEEcCCCccchHH--------HHHHcCC--EEEEeecCcccCCCCHHHHHHhcCc-CceEEE
Confidence            5 89999999999999999999987765421        2234454  5666667655677899999998876 899999


Q ss_pred             EcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC------cccEEEeCCCccc--CCCCCce
Q 013217          175 AGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK------YCDVVTTTTHKSL--RGPRGGM  241 (447)
Q Consensus       175 ~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~------~~Di~~~s~~K~l--~Gp~gG~  241 (447)
                      ++.++||+  ..   ++++|.++|+++|+++++|+++. .+...+.. .++.      .-.+++.|++|.+  +|.|.||
T Consensus       167 i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~-~~~~~~~~-~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~  244 (387)
T PRK07683        167 LPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYS-ELVYEQPH-TSIAHFPEMREKTIVINGLSKSHSMTGWRIGF  244 (387)
T ss_pred             EeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccc-cceeCCCc-CChhhccCCcCCeEEEeeccccccCccceeEE
Confidence            88888886  33   47889999999999999999964 33322211 1111      2348889999987  5778899


Q ss_pred             EEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCC
Q 013217          242 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSD  321 (447)
Q Consensus       242 i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~  321 (447)
                      ++.++      ++.+++..... ....+++.....++...+..- ....+...+++.++++.+.+.|.+.|+.+..+ ..
T Consensus       245 i~~~~------~l~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~  315 (387)
T PRK07683        245 LFAPS------YLAKHILKVHQ-YNVTCASSISQYAALEALTAG-KDDAKMMRHQYKKRRDYVYNRLISMGLDVEKP-TG  315 (387)
T ss_pred             EEcCH------HHHHHHHHHHH-hccCCCChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHHcCCcccCC-Ce
Confidence            99987      66666654321 111122222222222233321 12345566777888889999998888765543 34


Q ss_pred             CeeEEecCCCCCCCHHHHH-HHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          322 NHLVLVDLRPMGIDGARVE-KILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       322 ~~~~~v~~~~~~~~~~~~~-~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      +++.|+.+...+.+..++. ..|+++||.+..+...   .+...+++||++..  +    ++++++..+.|.+.+.
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f---~~~~~~~~Ri~~~~--~----~~~~~~al~~l~~~l~  382 (387)
T PRK07683        316 AFYLFPSIGHFTMSSFDFALDLVEEAGLAVVPGSAF---SEYGEGYVRLSYAY--S----IETLKEGLDRLEAFLQ  382 (387)
T ss_pred             eEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhh---CCCCCCeEEEEecC--C----HHHHHHHHHHHHHHHH
Confidence            5566766654345555555 4578899999654221   12235689998752  3    7788888888877664

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.92  E-value=1.3e-22  Score=198.70  Aligned_cols=321  Identities=18%  Similarity=0.145  Sum_probs=217.3

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-   96 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-   96 (447)
                      .+.+.|..++|+  +|+.+++++.+.+...-..+|+..    +   ..++    ++.+++++|.+.++   +|.+++|+ 
T Consensus        26 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~----~---~~~l----r~~ia~~~~~~~~~---~I~~t~G~~   91 (356)
T PRK04870         26 TGMVKLDAMENPYRLPAELRAELGERLAEVALNRYPDP----R---AAAL----KAALRAAMGVPAGA---DVLLGNGSD   91 (356)
T ss_pred             CCceeCcCCCCCCCCCHHHHHHHHHHhhccccccCCCC----C---HHHH----HHHHHHHhCcCCCC---cEEEcCCHH
Confidence            356788888884  588999999877643212244431    1   1234    35677888876431   45568998 


Q ss_pred             HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 013217           97 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG  176 (447)
Q Consensus        97 ~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~  176 (447)
                      +++..++.++++|||+|++.+|.|.++..        .+...|.  ++++++++ +++.+|++++++.+...++++|+++
T Consensus        92 ~~i~~~~~~~~~~gd~vlv~~P~y~~~~~--------~~~~~g~--~~~~i~~~-~~~~~d~~~l~~~~~~~~~~~v~l~  160 (356)
T PRK04870         92 ELIQLLALACAKPGATVLAPEPGFVMYRM--------SAKLAGL--EFVGVPLT-ADFTLDLPAMLAAIAEHRPALVFLA  160 (356)
T ss_pred             HHHHHHHHHhcCCCCEEEECCCCHHHHHH--------HHHHcCC--EEEEecCC-CCCCCCHHHHHHHhhcCCCCEEEEc
Confidence            78888888889999999999987765421        2334554  56666676 4578999999999876589999999


Q ss_pred             CCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC--cccEEEeCCCcc-cCCCCCceEEeecCCcch
Q 013217          177 ASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKS-LRGPRGGMIFFKKDPVLG  251 (447)
Q Consensus       177 ~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~--~~Di~~~s~~K~-l~Gp~gG~i~~~~~~~~~  251 (447)
                      .++||+  ..+.+++.++++..+.++++|+++. .+......+ .+.  ...+++.|++|+ ++|.|.|+++.++     
T Consensus       161 ~p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~-~~~~~~~~~-~~~~~~~vi~~~S~SK~~~~GlRiG~~i~~~-----  233 (356)
T PRK04870        161 YPNNPTGNLFDDADVERIIEAAPGLVVVDEAYQ-PFAGDSWLP-RLARFPNLLVMRTVSKLGLAGLRLGYLAGHP-----  233 (356)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCEEEEECCch-hhcCcchHH-HHhhCCCEEEEecchhhhhHHHhhhhhhCCH-----
Confidence            888886  7788888888887789999999863 332211111 111  124788999993 3678889999887     


Q ss_pred             hhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCCCCeeEEecCC
Q 013217          252 VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLVLVDLR  330 (447)
Q Consensus       252 ~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~v~~~  330 (447)
                       ++.+.+.....+.   +.+.....+...+++..  ..+++..+++.++++.+.+.|.+. |+.+..  ..+.++|+.+.
T Consensus       234 -~~i~~~~~~~~~~---~~~~~~q~~a~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~--~~~~~~~~~~~  305 (356)
T PRK04870        234 -AWIAELDKVRPPY---NVNVLTQATALFALEHV--DVLDAQAAQLRAERTRLAAALAALPGVTVFP--SAANFILVRVP  305 (356)
T ss_pred             -HHHHHHHHccCCC---cCCHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHHHHHHHhCCCcEECC--CCCeEEEEECC
Confidence             6777776544322   12222222223333321  235667788888999999999885 776543  33556777764


Q ss_pred             CCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          331 PMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       331 ~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                          +..++.+.|.++||.+..+...+   +..++++|+++.   +    .++++++.++|+++
T Consensus       306 ----~~~~~~~~l~~~gI~v~~~~~f~---~~~~~~iRis~~---~----~~~~~~l~~al~~~  355 (356)
T PRK04870        306 ----DAAAVFDGLKTRGVLVKNLSGMH---PLLANCLRVTVG---T----PEENAQFLAALKAA  355 (356)
T ss_pred             ----CHHHHHHHHHHCCEEEEECCCCC---CCCCCeEEEeCC---C----HHHHHHHHHHHHHh
Confidence                45778889999999997542211   123468999965   3    78999999999765

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.92  E-value=3.7e-22  Score=199.47  Aligned_cols=343  Identities=14%  Similarity=0.068  Sum_probs=214.8

Q ss_pred             cCeeEecCCC------CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CCCccceeeec
Q 013217           21 KSLELIASEN------FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQP   92 (447)
Q Consensus        21 ~~i~l~~~~n------~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~~~~~v~~   92 (447)
                      ..|+|--++.      .+++.+.+++...+......+|+..      ....++.+.+.+++.+.+|.  +++    +|..
T Consensus        53 ~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~------~G~~~lr~aia~~~~~~~~~~~~~~----~v~i  122 (430)
T PLN00145         53 PVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTC------VGLLPARRAIAEYLSRDLPYELSTD----DIYL  122 (430)
T ss_pred             CeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCCCCCC------ccCHHHHHHHHHHHhhccCCCCChh----hEEE
Confidence            5677765544      2468899998887765322244432      12334554444555554444  343    3445


Q ss_pred             CCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhhCC
Q 013217           93 LSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRP  170 (447)
Q Consensus        93 ~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~~~  170 (447)
                      |+|+ +|+..++.++++|||+|++++|.|+.+..        .....|.  +++.+++.+ +++.+|++++++++++ ++
T Consensus       123 t~G~~~al~l~~~~l~~~Gd~Vlv~~P~y~~y~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~~~~-~~  191 (430)
T PLN00145        123 TAGCAQAIEIIMSVLAQPGANILLPRPGYPLYEA--------RAVFSGL--EVRHFDLLPERGWEVDLEGVEALADE-NT  191 (430)
T ss_pred             eCCHHHHHHHHHHHhcCCCCEEEEcCCCCccHHH--------HHHHcCC--EEEEeeCCcccCCcCCHHHHHHHhCc-Cc
Confidence            7776 89999999999999999999988765421        2234454  444444433 4578999999998877 88


Q ss_pred             cEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC---Cc--ccEEEeCCCcc--cCCCC
Q 013217          171 KLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KY--CDVVTTTTHKS--LRGPR  238 (447)
Q Consensus       171 klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~---~~--~Di~~~s~~K~--l~Gp~  238 (447)
                      +++++++|+||+  ..+   +++|.++|+++|+++|+|+++ ..+.+.+....++   +.  .-+++.|++|.  ++|+|
T Consensus       192 ~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y-~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG~R  270 (430)
T PLN00145        192 VAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVY-DHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPGWR  270 (430)
T ss_pred             eEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccc-hhhccCCCCccchhhhcccCcEEEEeccccccCCCCee
Confidence            999988888886  555   678888999999999999995 4554433211121   11  23778999998  47889


Q ss_pred             CceEEeecCCcch--hhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEe
Q 013217          239 GGMIFFKKDPVLG--VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKL  315 (447)
Q Consensus       239 gG~i~~~~~~~~~--~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~  315 (447)
                      .||++...+....  .++.+.+....  .....++....+++..+++.-....+++..+++.++++.+.+.|++ .|+.+
T Consensus       271 lG~iv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~  348 (430)
T PLN00145        271 LGWIATCDPNGILKETKVVDSIRNYL--NISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKEIKCITC  348 (430)
T ss_pred             EEEEEEecchhhhhhhHHHHHHHHHh--cccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            9999985321000  01122233222  1222233333344444554312233577788888999999999987 47764


Q ss_pred             eeCCCCCeeEEecCCCC---CC-CHH-HHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHH
Q 013217          316 VSGGSDNHLVLVDLRPM---GI-DGA-RVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADF  390 (447)
Q Consensus       316 ~~~~~~~~~~~v~~~~~---~~-~~~-~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~  390 (447)
                      ...++...++|+.+...   +. +.. .+.+++++.||.+..    +.... .++++||++..  .    +++++...+.
T Consensus       349 ~~~P~ga~y~~v~l~~~~~~~~~~~~~~~~~ll~~~gV~v~p----G~~fg-~~~~lRis~~~--~----~~~l~~al~r  417 (430)
T PLN00145        349 PHKPEGSMFVMVKLDLSCLSGIKDDMDFCCKLAKEESVVVLP----GSALG-MKNWLRITFAI--D----PPSLEDGLER  417 (430)
T ss_pred             CcCCCeeeEEEeccChhhcCCCCCHHHHHHHHHHhCCEEEeC----ccccC-CCCeEEEEeCC--C----HHHHHHHHHH
Confidence            43234567778876421   22 344 445677889999954    43211 14689999752  3    6778887777


Q ss_pred             HHHHHHHH
Q 013217          391 IHEGVEIT  398 (447)
Q Consensus       391 i~~~l~~~  398 (447)
                      |.+.+...
T Consensus       418 l~~~~~~~  425 (430)
T PLN00145        418 LKSFCLRH  425 (430)
T ss_pred             HHHHHHHh
Confidence            77777644

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.92  E-value=9.8e-23  Score=197.47  Aligned_cols=325  Identities=14%  Similarity=0.110  Sum_probs=216.3

Q ss_pred             CCCHHHHHHHhhhhhccCCCCCCC-CcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCC
Q 013217           31 FTSRAVMEAVGSCLTNKYSEGLPG-KRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKP  109 (447)
Q Consensus        31 ~~~~~v~~a~~~~~~~~~~~g~~~-~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~p  109 (447)
                      ..|.+|++++.+++.+....|... ...+...++.+.++ .+++.++++|+++.++. +.+...|||.|+.+++.+++++
T Consensus         2 ~~p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~-~~~~~l~~l~~~~~~~~-v~~~~gsgT~a~ea~~~nl~~~   79 (349)
T TIGR01364         2 ALPEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVAN-EAESDLRELLNIPDNYE-VLFLQGGATGQFAAVPLNLLAE   79 (349)
T ss_pred             CCCHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHH-HHHHHHHHHhCCCCCce-EEEEcCCchHHHHHHHHhcCCC
Confidence            368899999999887522111110 01123455555555 67889999999853322 3455567889999999999999


Q ss_pred             CCEEEEecCCCCcccCCCccccccccccccceeEEEecccC-CCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCCh
Q 013217          110 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-ESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDY  186 (447)
Q Consensus       110 gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~  186 (447)
                      ||++++.....   +++.+.   ..++..|. +..+..+-. +....+|+++++  +++ ++++|.+++..+++  ..+ 
T Consensus        80 ~~~~l~i~~G~---fg~r~~---~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~v~~th~ETstGv~~~-  148 (349)
T TIGR01364        80 GKVADYIVTGA---WSKKAA---KEAKKYGV-VNVVASGKEGNYTKIPDPSTWE--ISE-DAAYVHYCANETIHGVEFR-  148 (349)
T ss_pred             CCeEEEEECCH---HHHHHH---HHHHHhCC-cEEEeccccCCCCCCCCHHhcC--CCC-CCCEEEEcCCCCcccEecc-
Confidence            99999876433   333321   12334454 343332211 123357777666  334 78999887544443  334 


Q ss_pred             HHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhc----
Q 013217          187 PRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNA----  261 (447)
Q Consensus       187 ~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~----  261 (447)
                          ++++.+++++++|+++++|..+.++.     ..|++++|.||+| ||.| |++++++      +..+++...    
T Consensus       149 ----~l~~~~~~l~iVDavss~g~~~id~~-----~~d~~~~ssqK~l-gP~Glg~l~~s~------~~~~~~~~~~~~~  212 (349)
T TIGR01364       149 ----ELPDVKNAPLVADMSSNILSRPIDVS-----KFGLIYAGAQKNI-GPAGLTVVIVRK------DLLGRASRITPSM  212 (349)
T ss_pred             ----eecccCCCeEEEEccccccCccCCHH-----HccEEEEeccccc-CCCceEEEEECH------HHHhhcccCCCCc
Confidence                67777899999999999887655432     3579999999987 6999 9999998      444433221    


Q ss_pred             -------cCCCCCCCCcHHHHHHHHHHHHHhcCh-hHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCC--CCC-eeEEecC
Q 013217          262 -------VFPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVEL-GYKLVSGG--SDN-HLVLVDL  329 (447)
Q Consensus       262 -------~~~~~~g~p~~~~~aal~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~--~~~-~~~~v~~  329 (447)
                             ......|||+.+.+.++..|++++..+ +++++.++..+.++++.+.|++. |+......  ..+ ..+.+.+
T Consensus       213 ~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~  292 (349)
T TIGR01364       213 LNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTL  292 (349)
T ss_pred             chHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEec
Confidence                   001224799999999999999999888 69999999999999999999997 56444211  112 1222333


Q ss_pred             CCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          330 RPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       330 ~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      ....+ ..++.+.+.+.||.+.    ++..   ..+.+|+|+..+++    ++|++++.++|+++++
T Consensus       293 ~~~~~-~~~~~~~~~~~Gi~~~----~~~~---~~g~vRvS~~~~nt----~edid~l~~al~~~~~  347 (349)
T TIGR01364       293 GNEEL-EKRFLKEAEERGLVSL----KGHR---SVGGMRASIYNAMP----LEGVQALVDFMKEFQK  347 (349)
T ss_pred             CChhH-hHHHHHHHHHCCCccc----CCcc---ccCeeEEECcCCCC----HHHHHHHHHHHHHHHH
Confidence            32222 2456567788999442    2221   13589999999998    9999999999998665

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.92  E-value=1.4e-22  Score=196.24  Aligned_cols=302  Identities=15%  Similarity=0.095  Sum_probs=190.2

Q ss_pred             CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCE
Q 013217           33 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDR  112 (447)
Q Consensus        33 ~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~  112 (447)
                      .|.+.++....+. +|.         |..+...++|    +.+++++|.+++.+   +..++|++||..++.++++|||+
T Consensus        35 ~~~~~~~~~~~~~-~~~---------g~~~~~~~Le----~~lA~~~g~~~e~i---lv~~gg~~a~~~~~~al~~~gd~   97 (346)
T TIGR03576        35 GFKIDEEDLELLE-TYV---------GPAIFEEKVQ----ELGREHLGGPEEKI---LVFNRTSSAILATILALEPPGRK   97 (346)
T ss_pred             ChhHHHHHHHHHH-Hhc---------CCHHHHHHHH----HHHHHHcCCCcceE---EEECCHHHHHHHHHHHhCCCCCE
Confidence            5777777665543 331         1223344555    68999999976532   23355569999999999999999


Q ss_pred             EEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC-C---CChHH
Q 013217          113 IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR-D---FDYPR  188 (447)
Q Consensus       113 Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~-~---~~~~~  188 (447)
                      |+++.++.+.|.+..     ..+...|.  +++.  .      .|+++++.  .+ ++++|+++.++..+ .   .++++
T Consensus        98 Vli~~~d~p~~~s~~-----~~~~l~ga--~~~~--~------~~l~~l~~--~~-~~~lIiitg~s~~G~v~~~~~L~~  159 (346)
T TIGR03576        98 VVHYLPEKPAHPSIP-----RSCKLAGA--EYFE--S------DELSELKK--ID-GTSLVVITGSTMDLKVVSEEDLKR  159 (346)
T ss_pred             EEECCCCCCCchhHH-----HHHHHcCC--EEec--c------CCHHHHhh--Cc-CceEEEEECCCCCCcccCHHHHHH
Confidence            998655444432211     12344554  2222  1      24555432  23 68888887554444 3   47899


Q ss_pred             HHHHHHHhCCEEEEehhhhcccccc-ccCCCCCC-cccEEEeCCCcccCCCCCceEEeecCCcchhhHHHHhhhccCCCC
Q 013217          189 MRQIADAVGALLMMDMAHISGLVAA-SVVADPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGL  266 (447)
Q Consensus       189 i~~ia~~~g~~livD~a~~~g~~~~-~~~~~~~~-~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~  266 (447)
                      |.++|+++|+++++|+||..|.... +. ..... +.|++++|+||+++|+|+|++++++      ++.+.+.....+..
T Consensus       160 i~~la~~~~~~livDEAy~~~~~~~~~~-~~~~~~~~divv~s~SKalaG~r~G~v~~~~------~li~~l~~~~~~~~  232 (346)
T TIGR03576       160 VIKQAKSKEAIVLVDDASGARVRRLYGQ-PPALDLGADLVVTSTDKLMDGPRGGLLAGRK------ELVDKIKSVGEQFG  232 (346)
T ss_pred             HHHHHHHcCCEEEEECCccccccccCCC-CCHHHcCCcEEEeccchhccccceEEEEeCH------HHHHHHHHhhcCcc
Confidence            9999999999999999998765321 11 11011 3689999999999999999999998      78787776555544


Q ss_pred             CCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhc
Q 013217          267 QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMA  346 (447)
Q Consensus       267 ~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~  346 (447)
                      .+ .+....++...+|+...   .+...+.+.++++.+.+.+.+  +.+...  ...++++++...+ +.+.+.+.|+++
T Consensus       233 ~s-~~~~~~~aa~~aL~~~~---~~~~~~~l~~r~~~~~~~l~~--~~~~~~--~~~f~~~~~~~~~-~~~~~~~ll~~~  303 (346)
T TIGR03576       233 LE-AQAPLLAAVVRALEEFE---LSRIRDAFKRKEEVYLRLFDK--LNVERT--PTGFVIKGVEEEK-LIEIGLDLLRNY  303 (346)
T ss_pred             cC-ccHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHh--CCCCcC--CCeEEEEeCCCCC-HHHHHHHHHHhC
Confidence            33 33344455555776432   234455666666666666653  444432  2336777875321 235677888999


Q ss_pred             CeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHH---HHHHHHHHHHHHH
Q 013217          347 SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEK---EFVAIADFIHEGV  395 (447)
Q Consensus       347 gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~---di~~l~~~i~~~l  395 (447)
                      ||.+..+    ...+..++++||+...  .    ++   +++++.++|++.+
T Consensus       304 gV~v~~~----~~f~~~~~~vRis~~~--~----~~~~~~~~~~~~al~~~~  345 (346)
T TIGR03576       304 GIITITA----VGMPGASKTLRFDLAA--K----DAERIGDDYLVEAVKDSL  345 (346)
T ss_pred             CEEEeCC----cccCCCCCeEEEEEec--C----hHHhcCHHHHHHHHHhcc
Confidence            9999653    2111124689998542  1    33   7999999887654

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PRK08363 alanine aminotransferase; Validated

Probab=99.92  E-value=7.8e-22  Score=196.04  Aligned_cols=336  Identities=16%  Similarity=0.094  Sum_probs=210.5

Q ss_pred             cCeeEecCCC-----CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CCCccceeeecC
Q 013217           21 KSLELIASEN-----FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPL   93 (447)
Q Consensus        21 ~~i~l~~~~n-----~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~~~~~v~~~   93 (447)
                      ..++|..++.     ..++.+.+++.+.+.+. ...|+      .......+++...+++.+.+|.  +++    +|.++
T Consensus        31 ~~i~l~~g~p~~~~~~p~~~~~~~~~~~~~~~-~~~Y~------~~~g~~~lr~~ia~~~~~~~g~~~~~~----~i~it   99 (398)
T PRK08363         31 KVIRLNIGDPVKFDFQPPEHMKEAYCRAIKEG-HNYYG------PSEGLPELREAIVKREKRKNGVDITPD----DVRVT   99 (398)
T ss_pred             CeEEEeCCCCCcCCCCCCHHHHHHHHHHHHcC-CCCCC------CCCCcHHHHHHHHHHHHHhcCCCCChh----hEEEe
Confidence            4588876665     36788899988766532 11222      1222345655555566655564  454    34457


Q ss_pred             CcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEec-ccCCCCCCCCHHHHHHHhhhhCCc
Q 013217           94 SGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY-RLDESTGLVDYDMLEKTAILFRPK  171 (447)
Q Consensus        94 sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~id~~~l~~~~~~~~~k  171 (447)
                      +|+ +|+..++.++++|||+|++.+|.|.++..        .+...|.  +.+.+ +.+++++.+|++++++.+.+ +++
T Consensus       100 ~G~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~v~~~~~~~~~~~~d~~~l~~~~~~-~~~  168 (398)
T PRK08363        100 AAVTEALQLIFGALLDPGDEILIPGPSYPPYTG--------LVKFYGG--VPVEYRTIEEEGWQPDIDDIRKKITE-KTK  168 (398)
T ss_pred             CCHHHHHHHHHHHhCCCCCEEEEcCCCCcchHH--------HHHHcCC--EEEEeccccccCCcCCHHHHHhhCCc-ceE
Confidence            776 89999999999999999999998876532        2233443  44444 34445567999999998876 889


Q ss_pred             EEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCC--CCc--ccEEEeCCCccc--CCCCCc
Q 013217          172 LIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP--FKY--CDVVTTTTHKSL--RGPRGG  240 (447)
Q Consensus       172 lii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~--~~~--~Di~~~s~~K~l--~Gp~gG  240 (447)
                      +|+++.++||+  ..+   +++|.++|+++|+++++|+++. .+.+.+.....  +..  --+++.|++|++  +|.|.|
T Consensus       169 ~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~-~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG  247 (398)
T PRK08363        169 AIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYD-LMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATGWRLG  247 (398)
T ss_pred             EEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhh-hhccCCcccCHHHcCcCCcEEEEecchhccCCccceEE
Confidence            99998888876  455   7899999999999999999964 33332211110  111  136679999985  577889


Q ss_pred             eEEe--ecCCcchhhHHHHhhhccC---CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcE
Q 013217          241 MIFF--KKDPVLGVELESAINNAVF---PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYK  314 (447)
Q Consensus       241 ~i~~--~~~~~~~~~~~~~i~~~~~---~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  314 (447)
                      ++++  ++      ++.+.+.....   ....+ ++.....+...++... ....++..+++.++++.+.+.|.+. |+.
T Consensus       248 ~~~~~~~~------~~~~~l~~~~~~~~~~~~~-~s~~~q~~~~~~l~~~-~~~l~~~~~~~~~~~~~l~~~L~~~~~~~  319 (398)
T PRK08363        248 YIYFVDPE------GKLAEVREAIDKLARIRLC-PNTPAQFAAIAGLTGP-MDYLEEYMKKLKERRDYIYKRLNEIPGIS  319 (398)
T ss_pred             EEEEeCcH------HHHHHHHHHHHHHhccccc-CChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence            9998  43      34333322110   00111 2222222333344321 2334667788888889999999875 776


Q ss_pred             eeeCCCCCeeEEecCCCC-CCCH-HHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHH
Q 013217          315 LVSGGSDNHLVLVDLRPM-GIDG-ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH  392 (447)
Q Consensus       315 ~~~~~~~~~~~~v~~~~~-~~~~-~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~  392 (447)
                      +..+ ..+++.|+.+... ..+. +.+.+.|.++||.+..+...   +....+++|+++.  .+    ++++++..+.|.
T Consensus       320 ~~~p-~g~~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~g~~f---~~~~~~~iRis~~--~~----~~~l~~~l~~l~  389 (398)
T PRK08363        320 TTKP-QGAFYIFPRIEEGPWKDDKEFVLDVLHEAHVLFVHGSGF---GEYGAGHFRLVFL--PP----VEILEEAMDRFE  389 (398)
T ss_pred             ecCC-CeEEEEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhh---CCCCCCeEEEEec--CC----HHHHHHHHHHHH
Confidence            5433 3456666666531 1133 34567778999999654221   1122458999974  33    788888888887


Q ss_pred             HHHHH
Q 013217          393 EGVEI  397 (447)
Q Consensus       393 ~~l~~  397 (447)
                      +++..
T Consensus       390 ~~~~~  394 (398)
T PRK08363        390 EFMRE  394 (398)
T ss_pred             HHHHH
Confidence            77653

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=99.92  E-value=1.1e-22  Score=199.23  Aligned_cols=311  Identities=16%  Similarity=0.167  Sum_probs=212.9

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-   96 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-   96 (447)
                      +..|.|..++|+  +|+.+++++.+.+...  ..||..    |   ...+    ++.+++++|++++    +|.+++|+ 
T Consensus        29 ~~~i~l~~nen~~~~~~~v~~a~~~~~~~~--~~Yp~~----g---~~~L----r~aia~~~~~~~~----~I~vt~Gs~   91 (366)
T PRK01533         29 HSFVKLASNENPFGCSPRVLDELQKSWLDH--ALYPDG----G---ATTL----RQTIANKLHVKME----QVLCGSGLD   91 (366)
T ss_pred             CceEEeCCCCCCCCCCHHHHHHHHHHHHhc--CcCCCC----C---HHHH----HHHHHHHhCCCcc----eEEECCCHH
Confidence            356899999996  4788999987765432  123321    1   1233    3567778899876    45568887 


Q ss_pred             HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 013217           97 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG  176 (447)
Q Consensus        97 ~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~  176 (447)
                      +++..++.++++|||+|++.+|.|.++..        .+...|.  +++.++++  ++.+|++++++++++ ++++|+++
T Consensus        92 e~i~~~~~~l~~~gd~vlv~~P~y~~~~~--------~~~~~g~--~v~~v~~~--~~~~d~~~l~~~~~~-~~~~v~i~  158 (366)
T PRK01533         92 EVIQIISRAVLKAGDNIVTAGATFPQYRH--------HAIIEGC--EVKEVALN--NGVYDLDEISSVVDN-DTKIVWIC  158 (366)
T ss_pred             HHHHHHHHHhcCCCCEEEEcCCcHHHHHH--------HHHHcCC--EEEEeecC--CCCcCHHHHHHHhCc-CCcEEEEe
Confidence            88899999999999999999988766532        2334554  45555554  356999999998876 89999998


Q ss_pred             CCCCCC--CCChHHHHHHHH---HhCCEEEEehhhhccccccccCCCCCC-----cccEEEeCCCccc--CCCCCceEEe
Q 013217          177 ASAYPR--DFDYPRMRQIAD---AVGALLMMDMAHISGLVAASVVADPFK-----YCDVVTTTTHKSL--RGPRGGMIFF  244 (447)
Q Consensus       177 ~~~~~~--~~~~~~i~~ia~---~~g~~livD~a~~~g~~~~~~~~~~~~-----~~Di~~~s~~K~l--~Gp~gG~i~~  244 (447)
                      .|+||+  ..+.+++.++++   +++ ++++|++++ .+...+..+..+.     ..-+++.|++|++  +|.|.||+++
T Consensus       159 ~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~-~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~  236 (366)
T PRK01533        159 NPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYY-EYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVG  236 (366)
T ss_pred             CCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHH-HhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhC
Confidence            888886  667666655554   444 678899964 4443221111111     1348889999986  6888899998


Q ss_pred             ecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhH-HHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCe
Q 013217          245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF-KVYQNKVVSNCRALASRLVELGYKLVSGGSDNH  323 (447)
Q Consensus       245 ~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~  323 (447)
                      ++      ++.+.+.....+   .+.+.....+...+++   ...+ ++..+...++++.+.+.+...|+++..+  +..
T Consensus       237 ~~------~~~~~l~~~~~~---~~~~~~~q~aa~~~l~---~~~~~~~~~~~~~~~r~~~~~~l~~~g~~~~~~--~~n  302 (366)
T PRK01533        237 HE------ELIEKLNVVRLP---FNVSSLAQKAATIAFG---DDEFIEEIVRVNTEGLRQYESFCKENEIPFYQS--QTN  302 (366)
T ss_pred             CH------HHHHHHHHhcCC---CCcCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCC--cCc
Confidence            87      787777665432   2234433334444443   2333 5556677777888888888888876553  355


Q ss_pred             eEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          324 LVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       324 ~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      ++|+.+.    +..++.+.|.++||.|+.    .      ++++||++.   +    .+|++++.++|++++..
T Consensus       303 f~~~~~~----~~~~~~~~l~~~GI~Vr~----~------~~~iRis~~---~----~~~~~~l~~al~~~~~~  355 (366)
T PRK01533        303 FIFLPVE----NGGEIYEACAHAGFIIRP----F------PNGVRITVG---T----REQNEGVISVLQQHFEN  355 (366)
T ss_pred             EEEEeCC----CHHHHHHHHHHCCcEEcc----C------CCceEEeCC---C----HHHHHHHHHHHHHHHHh
Confidence            6788763    356788999999999974    1      347999854   3    89999999999988764

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.92  E-value=2.3e-22  Score=213.28  Aligned_cols=299  Identities=20%  Similarity=0.187  Sum_probs=207.7

Q ss_pred             HHHHHHHHHHcCCCCCccceeeecCCcH---HHHHHHHHHhcCC-CC----EEEEecCCCCcccCCCccccccccccccc
Q 013217           69 TLCQKRALAAFNLDENKWGVNVQPLSGS---PANFEVYTAILKP-HD----RIMGLDLPHGGHLSHGFMTPKRRVSGTSI  140 (447)
Q Consensus        69 ~~~~~~~~~~~g~~~~~~~~~v~~~sGs---~a~~~~~~al~~p-gd----~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~  140 (447)
                      ..+++++++++|++.    +.+++.+|+   .++..++.++.++ ||    +|+++..+|+++..++        ...| 
T Consensus       571 ~~~r~~la~i~g~~~----v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a--------~~~G-  637 (993)
T PLN02414        571 EDLGDLLCEITGFDS----FSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASA--------AMCG-  637 (993)
T ss_pred             HHHHHHHHHHhCCCe----EEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHH--------HHCC-
Confidence            467899999999954    567777775   4777788888866 88    8999999998875432        2334 


Q ss_pred             eeEEEecccCCCCCCCCHHHHHHHhhh--hCCcEEEEcCCCCC-C-CCChHHHHHHHHHhCCEEEEehhhhccccccccC
Q 013217          141 YFESMPYRLDESTGLVDYDMLEKTAIL--FRPKLIIAGASAYP-R-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV  216 (447)
Q Consensus       141 ~~~~~~~~~~~~~~~id~~~l~~~~~~--~~~klii~~~~~~~-~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~  216 (447)
                       ++++.++++ ++|.+|+++|++++++  .++++|+++.+++- + ..|+++|+++||++|+++++|++|..++...   
T Consensus       638 -~~vv~v~~d-~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l---  712 (993)
T PLN02414        638 -MKIVVVGTD-AKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGL---  712 (993)
T ss_pred             -CEEEEeccC-CCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCc---
Confidence             456666666 5689999999999985  25788888855544 4 5679999999999999999999998776422   


Q ss_pred             CCCCC-cccEEEeCCCcccCCCC-----C-ceEEeecCCcchhhHHHHhhhcc-----------CCCCCCCCc----HHH
Q 013217          217 ADPFK-YCDVVTTTTHKSLRGPR-----G-GMIFFKKDPVLGVELESAINNAV-----------FPGLQGGPH----NHT  274 (447)
Q Consensus       217 ~~~~~-~~Di~~~s~~K~l~Gp~-----g-G~i~~~~~~~~~~~~~~~i~~~~-----------~~~~~g~p~----~~~  274 (447)
                      ..|.. ++|++++|.||||++|.     | |++++++.      +...+-...           .+...|+.+    .+.
T Consensus       713 ~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~------L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~a  786 (993)
T PLN02414        713 TSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH------LAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSA  786 (993)
T ss_pred             CCccccCCCEEEecCCccCCcCcccCCCCeeeEEEchh------hcccCCCCccccCCCcccccCCCCcCCccchhhhhH
Confidence            22322 69999999999987554     4 88888873      332221100           011123321    111


Q ss_pred             -HHHHHHH-HHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCC---CCCeeEEecCCC----CCCCHHHHHHHHhh
Q 013217          275 -IGGLAVC-LKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGG---SDNHLVLVDLRP----MGIDGARVEKILDM  345 (447)
Q Consensus       275 -~aal~~a-l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~~~~v~~~~----~~~~~~~~~~~L~~  345 (447)
                       ++..+.+ ++.+..+++++..++...|+++++++|.+ ++.+...+   ..-|-++++++.    .+++..++.+.|.+
T Consensus       787 l~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~-~~~~~~~~~~~~~~hEfv~~~~~l~~~~g~~~~di~krL~d  865 (993)
T PLN02414        787 LILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEG-HYPVLFRGKNGTCAHEFIIDLRPFKNTAGIEPEDVAKRLMD  865 (993)
T ss_pred             HHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHh-hCCccccCCCCCeeeeEEEeccccccccCCCHHHHHHHHHH
Confidence             1111112 34444556777788999999999999987 55544422   223455667652    23566889999999


Q ss_pred             cCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 013217          346 ASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAK  402 (447)
Q Consensus       346 ~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~~~~  402 (447)
                      +||..-....|      .++.+|++++.+++    ++|+|++++++..+.....+++
T Consensus       866 ~Gihapt~~~p------v~~~lmiepTE~~s----keelDrf~~al~~i~~e~~~~~  912 (993)
T PLN02414        866 YGFHAPTMSWP------VPGTLMIEPTESES----KAELDRFCDALISIREEIADIE  912 (993)
T ss_pred             cCcEEeeeccc------cCCEEEEEeeeeCC----HHHHHHHHHHHHHHHHHHHHHh
Confidence            99986442222      25689999999988    9999999999988887776544

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.92  E-value=7.5e-23  Score=199.63  Aligned_cols=327  Identities=12%  Similarity=0.031  Sum_probs=215.6

Q ss_pred             eeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHH
Q 013217           23 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV  102 (447)
Q Consensus        23 i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~  102 (447)
                      ..++|++..+++.|+++|.+...     +..+ ..+.+.++.+.++ .+++.+++++|++.++- +.+...|||.++.++
T Consensus         5 ~~f~pGP~~~~~~v~~a~~~~~~-----~~~~-~~hr~~~f~~~~~-~~r~~l~~l~~~~~~~~-v~f~~gs~T~a~~~~   76 (361)
T TIGR01366         5 GRFGSGPSKVRLEQLQALTTTAA-----SLFG-TSHRQAPVKNLVG-RVREGLAELFSLPDGYE-VILGNGGATAFWDAA   76 (361)
T ss_pred             CcccCCCcCCCHHHHHHHHhcCc-----cccc-cCcCChHHHHHHH-HHHHHHHHHhCCCCCce-EEEECCchhHHHHHH
Confidence            45789999999999999864210     1111 0123455666665 67899999999964321 223345678999999


Q ss_pred             HHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCC-
Q 013217          103 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP-  181 (447)
Q Consensus       103 ~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~-  181 (447)
                      +.+++.+ +.+++..-+++..+.+..    +...+.+ .++.++  .+ ++..++.+     +.+ ++++|++++..+. 
T Consensus        77 ~~~l~~~-~~l~i~~G~~~~~~~~~a----~~~~~~~-~~~~~~--~~-~~~~~~~~-----~~~-~~~lV~~~h~et~t  141 (361)
T TIGR01366        77 TFGLIEK-KSLHLSFGEFSSKFAKAV----KLAPWLG-EPIIVT--AD-PGSAPEPQ-----ADP-GVDVIAWAHNETST  141 (361)
T ss_pred             HHhcccc-cccEEecCHHHHHHHHHH----HhhhccC-CceEEe--cC-CCCCCCCc-----cCC-CCCEEEEcccCCcc
Confidence            9998743 222232333332221110    0000112 223333  33 23334432     334 8999988843333 


Q ss_pred             C-CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhh
Q 013217          182 R-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAIN  259 (447)
Q Consensus       182 ~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~  259 (447)
                      + ..|+++|   ++++|+++++|++|++|....++.     .+|++++|.||++++|.| ++++.++      +..+++.
T Consensus       142 G~~~pi~~I---~~~~g~~~iVDavqs~g~~~idv~-----~~D~~~~s~~K~lg~~~Gl~~~~~s~------~~~~~~~  207 (361)
T TIGR01366       142 GVAVPVRRP---EGSDDALVVIDATSGAGGLPVDIA-----ETDVYYFAPQKNFASDGGLWLAIMSP------AALERIE  207 (361)
T ss_pred             ceecccccc---cccCCCeEEEEcCccccCCCCCHH-----HCCEEEEEchhhcCCCCceEEEEECH------HHHhhhh
Confidence            3 7788887   588999999999999987755432     379999999999988877 5666676      3333332


Q ss_pred             h--------------------ccCCCCCCCCcHHHHHHHHHHHHHhcCh-hHHHHHHHHHHHHHHHHHHHHHCC-cEeee
Q 013217          260 N--------------------AVFPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVELG-YKLVS  317 (447)
Q Consensus       260 ~--------------------~~~~~~~g~p~~~~~aal~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~  317 (447)
                      .                    ....+..++|+...+.++..+++.+... +++...++..+.++++.+.|.+.+ ++++.
T Consensus       208 ~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~  287 (361)
T TIGR01366       208 AIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFV  287 (361)
T ss_pred             cccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCC
Confidence            1                    1112346778888888999999998877 588888999999999999999976 45553


Q ss_pred             CCC--CC-eeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          318 GGS--DN-HLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       318 ~~~--~~-~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                      ...  .+ ....+.+ +.+++..++.+.|.++||.+....     .......+|+|++.++|    ++|+++++++|+++
T Consensus       288 ~~~~~~s~~v~~v~~-~~g~~~~~v~~~L~~~gI~i~~~~-----~~l~~~~vRis~~~~~t----~~di~~l~~al~~~  357 (361)
T TIGR01366       288 TDPGKRSQVVGTIDF-VDDIDAATVAKILRANGIVDTEPY-----RKLGRNQLRVAMFPAID----PDDVEALTECVDWV  357 (361)
T ss_pred             CChhhcccceEEEEC-CCccCHHHHHHHHHHCCCeeccCc-----cccCCCcEEEEcCCCCC----HHHHHHHHHHHHHH
Confidence            211  11 2234566 367888999999999999985421     11234579999999998    99999999999997


Q ss_pred             HH
Q 013217          395 VE  396 (447)
Q Consensus       395 l~  396 (447)
                      ++
T Consensus       358 ~~  359 (361)
T TIGR01366       358 VE  359 (361)
T ss_pred             Hh
Confidence            65

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>PRK07324 transaminase; Validated

Probab=99.92  E-value=2.9e-22  Score=197.09  Aligned_cols=288  Identities=17%  Similarity=0.157  Sum_probs=187.0

Q ss_pred             HHHHHHcC-CCCCccceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC
Q 013217           73 KRALAAFN-LDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD  150 (447)
Q Consensus        73 ~~~~~~~g-~~~~~~~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  150 (447)
                      +.++++++ .+++    +|.+|+|+ +|+..++.++++|||+|++..|.|.++..        .+...|.  +++.++++
T Consensus        69 ~~ia~~~~~~~~~----~vi~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~--------~~~~~g~--~v~~v~~~  134 (373)
T PRK07324         69 EAVASLYQNVKPE----NILQTNGATGANFLVLYALVEPGDHVISVYPTYQQLYD--------IPESLGA--EVDYWQLK  134 (373)
T ss_pred             HHHHHHhcCCChh----hEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHcCC--EEEEEecc
Confidence            45556553 5554    34457776 89999999999999999999887765421        2234454  55555565


Q ss_pred             CC-CCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC--c
Q 013217          151 ES-TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--Y  222 (447)
Q Consensus       151 ~~-~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~--~  222 (447)
                      ++ ++.+|++++++++.+ +||+|+++.++||+  ..+   +++|+++|+++|+++++|+++ .++...+..++...  .
T Consensus       135 ~~~~~~~d~~~l~~~~~~-~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y-~~l~~~~~~~s~~~~~~  212 (373)
T PRK07324        135 EENGWLPDLDELRRLVRP-NTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVY-RPLDEDGSTPSIADLYE  212 (373)
T ss_pred             cccCCCCCHHHHHHhCCC-CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccc-cccccCCCCCChhhccC
Confidence            43 456899999998876 89999999888886  566   789999999999999999985 55554332222111  1


Q ss_pred             ccEEEeCCCccc--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHH
Q 013217          223 CDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN  300 (447)
Q Consensus       223 ~Di~~~s~~K~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~  300 (447)
                      ..+++.|++|++  +|+|.||+++++      ++.+.+.+.......+.+...+.++. .+++.. ....++..+.+.++
T Consensus       213 ~~I~~~s~SK~~~~~G~RiG~i~~~~------~li~~~~~~~~~~~~~~~~~~q~~a~-~~l~~~-~~~l~~~~~~~~~~  284 (373)
T PRK07324        213 KGISTNSMSKTYSLPGIRVGWIAANE------EVIDILRKYRDYTMICAGVFDDMLAS-LALEHR-DAILERNRKIVRTN  284 (373)
T ss_pred             CEEEEecchhhcCCccceeEEEecCH------HHHHHHHHHhCcEEecCChHHHHHHH-HHHcCH-HHHHHHHHHHHHHH
Confidence            247889999986  588889999976      77777766543322233333333332 234321 11234555666777


Q ss_pred             HHHHHHHHHHC-CcEeeeCCCCCeeEEecCCCCCCCHHHHHHH-HhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCC
Q 013217          301 CRALASRLVEL-GYKLVSGGSDNHLVLVDLRPMGIDGARVEKI-LDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRG  378 (447)
Q Consensus       301 ~~~l~~~L~~~-g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g  378 (447)
                      ++.+.+.|.+. ++.+..+ ......|+.+.. +.+..++.+. |+++||.+.+    |.... .++++||++..  +  
T Consensus       285 ~~~l~~~l~~~~~~~~~~p-~gg~~~~i~~~~-~~~~~~~~~~ll~~~gv~v~p----g~~F~-~~~~iRis~~~--~--  353 (373)
T PRK07324        285 LAILDEWVAKEPRVSYVKP-KAVSTSFVKLDV-DMPSEDFCLKLLKETGVLLVP----GNRFD-LEGHVRIGYCC--D--  353 (373)
T ss_pred             HHHHHHHHhcCCCceEECC-CceEEEEEEeCC-CCCHHHHHHHHHHhcCEEEEC----ccccC-CCCeEEEEecC--C--
Confidence            88888888774 6665543 223344555532 3456666655 5789999954    33211 24689999642  2  


Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q 013217          379 FSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       379 ~~~~di~~l~~~i~~~l~~  397 (447)
                        ++.+++..+.|.+++..
T Consensus       354 --~~~l~~~l~rl~~~l~~  370 (373)
T PRK07324        354 --TETLKKGLKKLSEFLRE  370 (373)
T ss_pred             --HHHHHHHHHHHHHHHHh
Confidence              67777777777776653

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=99.91  E-value=5.6e-22  Score=195.02  Aligned_cols=321  Identities=18%  Similarity=0.176  Sum_probs=217.0

Q ss_pred             cCeeEecCCCC--CCHHHHHHHhhhhhcc--CCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CCCccceeeecCC
Q 013217           21 KSLELIASENF--TSRAVMEAVGSCLTNK--YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLS   94 (447)
Q Consensus        21 ~~i~l~~~~n~--~~~~v~~a~~~~~~~~--~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~~~~~v~~~s   94 (447)
                      ..+.|..++|+  +|+.+++++.+.+...  ...+||..    |   ...+.+.+.+++.+.+|.  +++    +|.+|+
T Consensus        27 ~~i~l~~~~~~~~~~~~~~~al~~~l~~~~~~~~~Y~~~----g---~~~lr~aia~~~~~~~~~~~~~~----~I~it~   95 (368)
T PRK03317         27 VPVRLNTNENPYPPSPALVADIAEAVAEAAAGLNRYPDR----D---AVALRADLAAYLTAQTGVGLTVE----NVWAAN   95 (368)
T ss_pred             ceeEecCCCCCCCCCHHHHHHHHHHHhhhhhhhccCCCC----c---hHHHHHHHHHHhhhhccCCCChh----hEEECC
Confidence            34788888885  5788999988765421  11234321    1   234554555666666664  454    455699


Q ss_pred             cH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEE
Q 013217           95 GS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI  173 (447)
Q Consensus        95 Gs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~kli  173 (447)
                      |+ +++..++.++++|||.|++..|.|.++..        .+...|  .++++++.+ +++.+|++++++++...++++|
T Consensus        96 G~~~~l~~~~~~~~~~gd~v~v~~P~y~~~~~--------~~~~~g--~~~~~~~~~-~~~~~d~~~l~~~~~~~~~~~i  164 (368)
T PRK03317         96 GSNEILQQLLQAFGGPGRTALGFVPSYSMHPI--------IARGTH--TEWVEGPRA-ADFTLDVDAAVAAIAEHRPDVV  164 (368)
T ss_pred             CHHHHHHHHHHHhcCCCCEEEEeCCChHHHHH--------HHHhcC--CeeEEcccC-CCCCCCHHHHHHHHhccCCCEE
Confidence            98 89999999999999999999998766531        122333  355565554 4578999999999876688999


Q ss_pred             EEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC----c-ccEEEeCCCccc--CCCCCceEEe
Q 013217          174 IAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----Y-CDVVTTTTHKSL--RGPRGGMIFF  244 (447)
Q Consensus       174 i~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~----~-~Di~~~s~~K~l--~Gp~gG~i~~  244 (447)
                      +++.++||+  ..+.+++.++|+..++++|+|++|. ++...+. +....    . -.+++.|++|.+  +|.|.|++++
T Consensus       165 ~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~-~~~~~~~-~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~  242 (368)
T PRK03317        165 FLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYA-EFRRSGT-PSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAA  242 (368)
T ss_pred             EEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCch-hhcccCC-cCHHHHHHhCCCEEEEEechhhhccchhhhhhhhC
Confidence            888888876  7899999999999999999999974 3332221 11111    1 236778999987  4778899999


Q ss_pred             ecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCee
Q 013217          245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHL  324 (447)
Q Consensus       245 ~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~  324 (447)
                      ++      ++.+.+.....+.  + .+....++...+++..  ..+.+..+++.++++.+.+.|.+.|+.+..+ ..+++
T Consensus       243 ~~------~~~~~l~~~~~~~--~-~s~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~  310 (368)
T PRK03317        243 AP------AVVDALRLVRLPY--H-LSAVTQAAARAALRHA--DELLASVAALRAERDRVVAWLRELGLRVAPS-DANFV  310 (368)
T ss_pred             CH------HHHHHHHhcCCCC--C-CCHHHHHHHHHHhhCH--HHHHHHHHHHHHHHHHHHHHHHHCCCEeCCC-CCcEE
Confidence            87      6777776543222  1 2333333334455432  2345556777888888899998888876543 23444


Q ss_pred             EEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          325 VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       325 ~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      .|.++.    +..++.+.|.++||.+...    .    .++++|+++.   +    .++++++.+++.+++.
T Consensus       311 ~~~~~~----~~~~~~~~l~~~Gv~v~~~----~----~~~~iRi~~~---~----~~~~~~~~~~l~~~~~  363 (368)
T PRK03317        311 LFGRFA----DRHAVWQGLLDRGVLIRDV----G----IPGWLRVTIG---T----PEENDAFLAALAEVLA  363 (368)
T ss_pred             EEeccC----CHHHHHHHHHHCCEEEEeC----C----CCCeEEEecC---C----HHHHHHHHHHHHHHHH
Confidence            443442    4577888898999999642    1    1358999954   3    7899999999988765

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=99.91  E-value=5.6e-22  Score=194.86  Aligned_cols=320  Identities=17%  Similarity=0.101  Sum_probs=215.3

Q ss_pred             CeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-HH
Q 013217           22 SLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PA   98 (447)
Q Consensus        22 ~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a   98 (447)
                      .++|..+++.  .++.+.+++.+.+...  .+|+..      . ...++    +.++++++++++    +|.+++|+ ++
T Consensus        34 ~~~l~~~~~~~~~~~~~~~a~~~~~~~~--~~Y~~~------~-~~~Lr----~~ia~~~~~~~~----~I~it~G~~~~   96 (369)
T PRK08153         34 RARIGANESGFGPSPSVIAAMREAAAEI--WKYGDP------E-NHDLR----HALAAHHGVAPE----NIMVGEGIDGL   96 (369)
T ss_pred             eeEecCCCCCCCCCHHHHHHHHHHHHHh--hcCCCC------c-cHHHH----HHHHHHhCCCHH----HEEEcCCHHHH
Confidence            3688888885  4788999987655321  233322      1 23444    567778888875    45569998 77


Q ss_pred             HHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCC
Q 013217           99 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS  178 (447)
Q Consensus        99 ~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~  178 (447)
                      +..++.++++|||.|++.+|.|+++..        .+...|.  +++.++++.  ..+|++++++.+...++++|+++.|
T Consensus        97 l~~~~~~~~~~gd~vlv~~p~y~~~~~--------~~~~~g~--~~~~vp~~~--~~~~~~~l~~~~~~~~~~~i~l~~P  164 (369)
T PRK08153         97 LGLIVRLYVEPGDPVVTSLGAYPTFNY--------HVAGFGG--RLVTVPYRD--DREDLDALLDAARRENAPLVYLANP  164 (369)
T ss_pred             HHHHHHHhcCCCCEEEECCCcchHHHH--------HHHHcCC--eEEEeeCCC--CCCCHHHHHHHhcccCCcEEEEeCC
Confidence            777888889999999999988766532        1223444  445555542  3589999988776558999999888


Q ss_pred             CCCC--CCChHHHHHHHHHh--CCEEEEehhhhccccccccCCCCCC---cccEEEeCCCccc--CCCCCceEEeecCCc
Q 013217          179 AYPR--DFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK---YCDVVTTTTHKSL--RGPRGGMIFFKKDPV  249 (447)
Q Consensus       179 ~~~~--~~~~~~i~~ia~~~--g~~livD~a~~~g~~~~~~~~~~~~---~~Di~~~s~~K~l--~Gp~gG~i~~~~~~~  249 (447)
                      +||+  ..+.+++.++++..  |+++|+|+++. .+...+.. .++.   ...+++.|++|++  +|.|.||+++++   
T Consensus       165 ~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~-~~~~~~~~-~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~v~~~---  239 (369)
T PRK08153        165 DNPMGSWHPAADIVAFIEALPETTLLVLDEAYC-ETAPAGAA-PPIDTDDPNVIRMRTFSKAYGLAGARVGYAIGAP---  239 (369)
T ss_pred             CCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchh-hhcCcccc-hhhhhcCCCEEEEecchHhccCcchheeeeecCH---
Confidence            8876  67777777776654  89999999963 34332211 1111   1237889999987  588889999987   


Q ss_pred             chhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecC
Q 013217          250 LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDL  329 (447)
Q Consensus       250 ~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~  329 (447)
                         ++.+.+.....+  . +.+....++...+++.  ....++..+.+.++++.+.+.|++.|+.+..  ...+++++++
T Consensus       240 ---~~~~~l~~~~~~--~-~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~~~~~L~~~g~~~~p--~~~~f~~~~~  309 (369)
T PRK08153        240 ---GTIKAFDKVRNH--F-GMNRIAQAAALAALKD--QAYLAEVVGKIAAARDRIAAIARANGLTPLP--SATNFVAIDC  309 (369)
T ss_pred             ---HHHHHHHHhhcC--C-CCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCccCC--CcCcEEEEEC
Confidence               677766654322  1 2344444444445531  1224566777788888888889888876543  3456677777


Q ss_pred             CCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          330 RPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       330 ~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      ........++.+.|.++||.++.   |+..  ...+++|+++.   +    ++|++++.++|++++..
T Consensus       310 ~~~~~~a~~l~~~l~~~Gi~v~~---p~~~--~~~~~iRis~~---~----~~~~~~~~~al~~~~~~  365 (369)
T PRK08153        310 GRDGAFARAVLDGLIARDIFVRM---PGVA--PLDRCIRVSCG---P----DEELDLFAEALPEALEA  365 (369)
T ss_pred             CCCcccHHHHHHHHHHCCeEEee---CCCC--CCCCeEEEecC---C----HHHHHHHHHHHHHHHHH
Confidence            53334567788888889999852   3321  12458999965   3    89999999999988764

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.91  E-value=4.3e-22  Score=195.94  Aligned_cols=319  Identities=19%  Similarity=0.178  Sum_probs=215.3

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-   96 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-   96 (447)
                      +..++|..++|+  .++.+++++...+.. + ..|+..      . ...++    +.+++++|++++    +|.+++|+ 
T Consensus        32 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~-~-~~y~~~------~-~~~lr----~~ia~~~~~~~~----~i~~t~G~~   94 (367)
T PRK02731         32 ADIIKLASNENPLGPSPKAIEAIRAAADE-L-HRYPDG------S-GFELK----AALAEKFGVDPE----RIILGNGSD   94 (367)
T ss_pred             CceEEecCCCCCCCCCHHHHHHHHHHHHh-h-cCCCCC------c-HHHHH----HHHHHHhCcCHH----HEEEcCCHH
Confidence            456888877775  478888888776543 1 234432      1 12343    567788898775    34558888 


Q ss_pred             HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 013217           97 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG  176 (447)
Q Consensus        97 ~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~  176 (447)
                      +++..++.+++++||+|++.+|.|..+..        .....|.  +++.++.  +++.+|++++++.+++ +|++|+++
T Consensus        95 ~~l~~~~~~l~~~gd~vl~~~p~y~~~~~--------~~~~~g~--~~~~~~~--~~~~~~~~~l~~~~~~-~~~~v~l~  161 (367)
T PRK02731         95 EILELLARAYLGPGDEVIYSEHGFAVYPI--------AAQAVGA--KPVEVPA--KDYGHDLDAMLAAVTP-RTRLVFIA  161 (367)
T ss_pred             HHHHHHHHHhcCCCCEEEEecCCHHHHHH--------HHHHcCC--eEEEecc--cCCCCCHHHHHHHhCC-CCcEEEEe
Confidence            67777788889999999999987754321        1223444  4555545  3578999999999976 89999998


Q ss_pred             CCCCCC--CCChHHHHHHHHHh--CCEEEEehhhhccccccccCCCCCC-----cccEEEeCCCccc--CCCCCceEEee
Q 013217          177 ASAYPR--DFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK-----YCDVVTTTTHKSL--RGPRGGMIFFK  245 (447)
Q Consensus       177 ~~~~~~--~~~~~~i~~ia~~~--g~~livD~a~~~g~~~~~~~~~~~~-----~~Di~~~s~~K~l--~Gp~gG~i~~~  245 (447)
                      .++||+  ..+.+++.++|+.+  |+++++|+++.. +...+....++.     ...+++.|++|.+  +|.|.|+++++
T Consensus       162 ~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~~-~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~  240 (367)
T PRK02731        162 NPNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYAE-YVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIAP  240 (367)
T ss_pred             CCCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHHH-hccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeCC
Confidence            888876  78999999999875  899999999643 332221111111     1247788999985  57788999998


Q ss_pred             cCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChh-HHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCee
Q 013217          246 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPE-FKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHL  324 (447)
Q Consensus       246 ~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~  324 (447)
                      +      ++.+.+.....+.  +. +.....+...++   .... .++..+...++.+.+.+.|++.|+.+..  ....+
T Consensus       241 ~------~~~~~l~~~~~~~--~~-~~~~~~~a~~~l---~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~g~~  306 (367)
T PRK02731        241 P------EIIDALNRVRQPF--NV-NSLALAAAVAAL---DDDAFVEKSRALNAEGMAWLTEFLAELGLEYIP--SVGNF  306 (367)
T ss_pred             H------HHHHHHHHccCCC--CC-CHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHHHHCCCccCC--CCceE
Confidence            7      6777776543222  11 222222222233   2233 3566677778888889999888887653  23567


Q ss_pred             EEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          325 VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       325 ~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      +|+.+. ...+..++.+.|.++||.+..+..++     .+++||++++   +    .+|++++.++|+++++
T Consensus       307 ~~i~~~-~~~~~~~~~~~L~~~gI~v~~~~~~~-----~~~~iRis~~---~----~~e~~~l~~aL~~~~~  365 (367)
T PRK02731        307 ILVDFD-DGKDAAEAYQALLKRGVIVRPVAGYG-----LPNALRITIG---T----EEENRRFLAALKEFLA  365 (367)
T ss_pred             EEEECC-CCCCHHHHHHHHHHCCEEEEeCCCCC-----CCCeEEEecC---C----HHHHHHHHHHHHHHHh
Confidence            788873 34567888999989999996532111     2458999964   3    7899999999988764

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.91  E-value=4.1e-22  Score=195.90  Aligned_cols=320  Identities=17%  Similarity=0.141  Sum_probs=204.3

Q ss_pred             EecCCCCC----CHHHHHHHhhhhhccC-------CCCCCCCcccCc-hhHHHHHHHHHHHHHHHHcCCCCCccceeeec
Q 013217           25 LIASENFT----SRAVMEAVGSCLTNKY-------SEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQP   92 (447)
Q Consensus        25 l~~~~n~~----~~~v~~a~~~~~~~~~-------~~g~~~~~~~~g-~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~   92 (447)
                      ..+|.+|+    +|.+.+++...+.. |       ..|..|+|...| .+..+++    ++.+++++|++.    + +..
T Consensus         8 ~~~s~~YL~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~gs~~~~g~~~~~~~~----e~~la~~~~~~~----~-l~~   77 (370)
T PRK05937          8 DFVTNDFLGFSRSDTLVHEVEKRYRL-YCRQFPHAQLGYGGSRAILGPSSLLDDL----EHKIAHFHGAPE----A-FIV   77 (370)
T ss_pred             EeECCCccCCCCCHHHHHHHHHHHHH-hccccCCCCCCCCCcCcccCChHHHHHH----HHHHHHHhCCCe----E-EEE
Confidence            34677876    56666666555443 3       234445554333 2334444    478999999975    2 446


Q ss_pred             CCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh----
Q 013217           93 LSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF----  168 (447)
Q Consensus        93 ~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~----  168 (447)
                      +||+.||..++..+.++||.|++...+|++.+...        .....  ..+.+      ...|+++++++++..    
T Consensus        78 ~sG~~a~~~~~~~~~~~~d~ii~d~~~H~sv~~~~--------~~~~~--~~~~~------~~~d~~~l~~~l~~~~~~~  141 (370)
T PRK05937         78 PSGYMANLGLCAHLSSVTDYVLWDEQVHISVVYSL--------SVISG--WHQSF------RHNDLDHLESLLESCRQRS  141 (370)
T ss_pred             CChHHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHH--------HHcCC--ceEEe------cCCCHHHHHHHHHhhhccC
Confidence            99999998777777788999998888887664321        11111  11222      246899999988742    


Q ss_pred             -CCcEEEEcCCCCC-C-CCChHHHHHHHHHhCCEEEEehhhhccccccccC----CCCCCcccEEEeCCCcccCCCCCce
Q 013217          169 -RPKLIIAGASAYP-R-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV----ADPFKYCDVVTTTTHKSLRGPRGGM  241 (447)
Q Consensus       169 -~~klii~~~~~~~-~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~----~~~~~~~Di~~~s~~K~l~Gp~gG~  241 (447)
                       ++.+|++++.+++ + ..|+++|.++|+++|+++++|++|+.|.+..+..    ...+...++++.|++|.+ ||.|+.
T Consensus       142 ~~~~~v~v~~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~-g~~G~~  220 (370)
T PRK05937        142 FGRIFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKAL-GSMGAA  220 (370)
T ss_pred             CCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhh-hcCceE
Confidence             2446666644433 3 8899999999999999999999999886654321    111222346678899976 677755


Q ss_pred             EEeecCCcchhhHHHHhhhccCCC-CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCC
Q 013217          242 IFFKKDPVLGVELESAINNAVFPG-LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS  320 (447)
Q Consensus       242 i~~~~~~~~~~~~~~~i~~~~~~~-~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~  320 (447)
                      +++.+      +..+.+.....|. ..++.+...++++..+++.+...+ ....+++.++++++.+.|...+     .+ 
T Consensus       221 vl~~~------~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~~-~~~~~~l~~l~~~l~~~l~~~~-----~~-  287 (370)
T PRK05937        221 LLSSS------EVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQEG-ELARKQLFRLKEYFAQKFSSAA-----PG-  287 (370)
T ss_pred             EEcCH------HHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHhcCCCC-----CC-
Confidence            55555      4444333211222 233456666777878888775443 3455667777777776664321     11 


Q ss_pred             CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          321 DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       321 ~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                        ....+.+.  +.+...+.+.|.++||.++..+.|      ..+.||++++.++|    ++|++++++.|+++++..
T Consensus       288 --~~~~i~~~--~~~~~~~~~~L~~~gi~v~~~~~~------~~~~iRis~~~~~t----~edid~l~~~L~~~~~~~  351 (370)
T PRK05937        288 --CVQPIFLP--GISEQELYSKLVETGIRVGVVCFP------TGPFLRVNLHAFNT----EDEVDILVSVLATYLEKY  351 (370)
T ss_pred             --CEEEEEeC--ChhHHHHHHHHHHCCeeEEeeCCC------CCCEEEEEcCCCCC----HHHHHHHHHHHHHHHHHh
Confidence              11112222  234577888999999998753333      13479999999998    999999999999988754

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.91  E-value=2.2e-22  Score=197.29  Aligned_cols=314  Identities=18%  Similarity=0.165  Sum_probs=211.9

Q ss_pred             cCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-H
Q 013217           21 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P   97 (447)
Q Consensus        21 ~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~   97 (447)
                      ..++|..++|.  .++.+++++...+.. . ..||..       ...++    ++.++++++++++    +|.+++|+ +
T Consensus        30 ~~i~l~~n~~~~~~~~~v~~a~~~~~~~-~-~~~p~~-------g~~~l----r~~ia~~~~~~~~----~i~~t~G~~~   92 (359)
T PRK03158         30 KIVKLASNENPYGPSPKVKEAIAAHLDE-L-ALYPDG-------YAPEL----RTKVAKHLGVDEE----QLLFGAGLDE   92 (359)
T ss_pred             ceEEecCCCCCCCCCHHHHHHHHHHHHH-h-hcCCCC-------cHHHH----HHHHHHHhCCCHH----HEEECCCHHH
Confidence            55788878775  478899988776543 1 112221       12334    3567778888765    34458887 7


Q ss_pred             HHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcC
Q 013217           98 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA  177 (447)
Q Consensus        98 a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~  177 (447)
                      ++..++.+++++||+|++.+|.|+++..        .....|.  +++.++++  ++.+|++++++.+++ ++++|+++.
T Consensus        93 ~l~~~~~~~~~~gd~v~~~~p~y~~~~~--------~~~~~g~--~~~~~~~~--~~~~d~~~l~~~~~~-~~~~v~i~~  159 (359)
T PRK03158         93 VIQMISRALLNPGTNTVMAEPTFSQYRH--------NAIIEGA--EVREVPLK--DGGHDLEAMLKAIDE-QTKIVWICN  159 (359)
T ss_pred             HHHHHHHHHhCCCCEEEEcCCCHHHHHH--------HHHHcCC--eEEEEecC--CCCcCHHHHHHhcCC-CCCEEEEeC
Confidence            8888888999999999999988766421        1233454  44455554  467999999988876 899999888


Q ss_pred             CCCCC--CCChHHHHHHHHH--hCCEEEEehhhhccccccccCCCCCC-----cccEEEeCCCccc--CCCCCceEEeec
Q 013217          178 SAYPR--DFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK-----YCDVVTTTTHKSL--RGPRGGMIFFKK  246 (447)
Q Consensus       178 ~~~~~--~~~~~~i~~ia~~--~g~~livD~a~~~g~~~~~~~~~~~~-----~~Di~~~s~~K~l--~Gp~gG~i~~~~  246 (447)
                      ++||+  ..+.++|.++++.  +|+++|+|+++.. +...+..+.++.     ...+++.|++|++  +|.|.|++++++
T Consensus       160 p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~  238 (359)
T PRK03158        160 PNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYE-YVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIASE  238 (359)
T ss_pred             CCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHh-hcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehhcCCH
Confidence            88886  7788999999887  5999999999643 332221111111     1358889999987  478889999987


Q ss_pred             CCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChh-HHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeE
Q 013217          247 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPE-FKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLV  325 (447)
Q Consensus       247 ~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~  325 (447)
                            ++.+.+.....+  .+. +.....++..+++   ... .++..+...++++.+.+.|.+.|+.+..+  ...++
T Consensus       239 ------~~~~~~~~~~~~--~~~-~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~g~~i  304 (359)
T PRK03158        239 ------ELIEKLNIARPP--FNT-TRIAQYAAIAALE---DQAFLKECVEKNAEGLEQYYAFCKEYGLFYYPS--QTNFI  304 (359)
T ss_pred             ------HHHHHHHHhcCC--CCC-CHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHCCCeeCCC--cCcEE
Confidence                  677777654332  222 3333333333443   223 35556666777888888888888876543  24567


Q ss_pred             EecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          326 LVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       326 ~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                      |+++.   .+..++.+.|.++||.+..+...+     .++++||++.   +    .+|++++.++|+++
T Consensus       305 ~~~~~---~~~~~~~~~l~~~gv~v~~g~~f~-----~~~~iRi~~~---~----~~~~~~l~~al~~~  358 (359)
T PRK03158        305 FVDTG---RDANELFEALLKKGYIVRSGAALG-----FPTGVRITIG---L----KEQNDKIIELLKEL  358 (359)
T ss_pred             EEECC---CCHHHHHHHHHHCCeEEeeCCCCC-----CCCeEEEecC---C----HHHHHHHHHHHHHh
Confidence            77763   356788888888999996542221     2468999854   3    89999999999775

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.91  E-value=4.8e-22  Score=195.94  Aligned_cols=318  Identities=17%  Similarity=0.140  Sum_probs=213.5

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-   96 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-   96 (447)
                      ...|+|..++|+  +||.+++++.....   ...||..      . ...+    ++.+++++|++++    +|.+++|+ 
T Consensus        52 ~~~i~l~~n~~p~~~~~~v~~a~~~~~~---~~~Yp~~------~-~~~l----r~~ia~~~~~~~~----~I~~t~Ga~  113 (380)
T PLN03026         52 EDIVKLDANENPYGPPPEVLEALGNMKF---PYVYPDP------E-SRRL----RAALAEDSGLESE----NILVGCGAD  113 (380)
T ss_pred             cceEEccCCCCCCCCCHHHHHHHHhhHh---hccCCCC------C-HHHH----HHHHHHHhCcChh----hEEEcCCHH
Confidence            356889899885  57888888754211   1122221      1 2234    4678888998875    45568887 


Q ss_pred             HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 013217           97 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG  176 (447)
Q Consensus        97 ~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~  176 (447)
                      +++..++.++++|||+|++.+|.|+.+.        ......|.  +++.++.+ +++.+|++++++++...++++|+++
T Consensus       114 ~~i~~~~~~~~~~gd~Vlv~~P~y~~y~--------~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~~~~~~~~~v~l~  182 (380)
T PLN03026        114 ELIDLLMRCVLDPGDKIIDCPPTFGMYV--------FDAAVNGA--EVIKVPRT-PDFSLDVPRIVEAVETHKPKLLFLT  182 (380)
T ss_pred             HHHHHHHHHhcCCCCEEEEcCCChHHHH--------HHHHHcCC--EEEEeecC-CCCCcCHHHHHHHHhccCCcEEEEe
Confidence            7888888889999999999998875431        12234454  45555554 4578999999998844489999999


Q ss_pred             CCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC--cccEEEeCCCccc--CCCCCceEEeecCCcc
Q 013217          177 ASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL--RGPRGGMIFFKKDPVL  250 (447)
Q Consensus       177 ~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~--~~Di~~~s~~K~l--~Gp~gG~i~~~~~~~~  250 (447)
                      .++||+  ..+.+++.++++.. +++++|+++ ..+...+.....+.  ...+++.|++|.+  +|.|.|+++.++    
T Consensus       183 ~P~NPTG~~~~~~~l~~l~~~~-~~vi~DeaY-~~~~~~~~~~~~~~~~~~viv~~SfSK~~glaGlRiGy~~~~~----  256 (380)
T PLN03026        183 SPNNPDGSIISDDDLLKILELP-ILVVLDEAY-IEFSTQESRMKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPL----  256 (380)
T ss_pred             CCCCCCCCCCCHHHHHHHHhcC-CEEEEECcc-hhhcCCcchHHHHHhCCCEEEEecchHhhcCccccceeeecCH----
Confidence            888886  78999999999864 899999996 33332211000011  1348889999986  688889999987    


Q ss_pred             hhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCC-cEeeeCCCCCeeEEecC
Q 013217          251 GVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG-YKLVSGGSDNHLVLVDL  329 (447)
Q Consensus       251 ~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~v~~  329 (447)
                        ++.+.+.....+..   .+.....+...+++.  ...+++..+.+.++++.+.+.|++.+ +.+..  +.+.++|+.+
T Consensus       257 --~~i~~l~~~~~~~~---~~~~~q~aa~~aL~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p--~~~~f~~~~~  327 (380)
T PLN03026        257 --SIIEYLWRAKQPYN---VSVAAEVAACAALSN--PKYLEDVKNALVEERERLFGLLKEVPFLEPYP--SDANFILCRV  327 (380)
T ss_pred             --HHHHHHHHhcCCCC---CCHHHHHHHHHHhhC--HHHHHHHHHHHHHHHHHHHHHHHHCCCCeECC--CCCeEEEEEC
Confidence              67777765543322   233333333334532  12246667778888889999998865 44432  3456677776


Q ss_pred             CCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          330 RPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       330 ~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                      .. +.+..++.+.|.++||.++.+..     +...+.+||++.   +    .++++++.++|++.
T Consensus       328 ~~-~~~~~~~~~~l~~~gI~v~~~~~-----~~~~~~lRis~~---~----~~~~~~l~~al~~~  379 (380)
T PLN03026        328 TS-GRDAKKLKEDLAKMGVMVRHYNS-----KELKGYIRVSVG---K----PEHTDALMEALKQL  379 (380)
T ss_pred             CC-CCCHHHHHHHHHHCCeEEEECCC-----CCCCCEEEEecC---C----HHHHHHHHHHHHHh
Confidence            53 34677888888899999965321     112458999865   3    78999999998753

>PLN02187 rooty/superroot1

Probab=99.91  E-value=9.4e-22  Score=197.90  Aligned_cols=342  Identities=13%  Similarity=0.071  Sum_probs=213.6

Q ss_pred             hcCeeEecCCCC------CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC--CCCCccceeee
Q 013217           20 FKSLELIASENF------TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQ   91 (447)
Q Consensus        20 ~~~i~l~~~~n~------~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g--~~~~~~~~~v~   91 (447)
                      +..|.|..++..      +++.+.+++...+......+|.      .......+.+.+.+++.+.++  ++++    +|.
T Consensus        66 ~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~------~~~G~~~lR~aiA~~~~~~~~~~~~~~----~I~  135 (462)
T PLN02187         66 KTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGKGNSYG------PGAGILPARRAVADYMNRDLPHKLTPE----DIF  135 (462)
T ss_pred             CCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCC------CCCChHHHHHHHHHHHHHhcCCCCCcc----cEE
Confidence            356777666442      3567888888766542112232      122234455444556655554  4554    445


Q ss_pred             cCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhhC
Q 013217           92 PLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFR  169 (447)
Q Consensus        92 ~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~~  169 (447)
                      +|+|+ +++..++.++++|||+|++.+|.|+++..        .+...|.  +++.+++.+ +++.+|++++++++++ +
T Consensus       136 it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~y~~--------~~~~~g~--~~~~~~l~~~~~~~~d~~~l~~~~~~-~  204 (462)
T PLN02187        136 LTAGCNQGIEIVFESLARPNANILLPRPGFPHYDA--------RAAYSGL--EVRKFDLLPEKEWEIDLEGIEAIADE-N  204 (462)
T ss_pred             EeCCHHHHHHHHHHHhcCCCCEEEEeCCCCccHHH--------HHHHcCC--EEEEEeCccccCCccCHHHHHHhcCC-C
Confidence            58887 89999999999999999999998876421        2334554  444444432 4678999999998876 7


Q ss_pred             CcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC---c--ccEEEeCCCccc--CCC
Q 013217          170 PKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK---Y--CDVVTTTTHKSL--RGP  237 (447)
Q Consensus       170 ~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~---~--~Di~~~s~~K~l--~Gp  237 (447)
                      +++|+++.|+||+  ..+   +++|.++|+++|+++|+|+++ ..+.+.+....++.   .  .-+++.|++|++  +|+
T Consensus       205 ~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y-~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~pGl  283 (462)
T PLN02187        205 TVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVY-DRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVPGW  283 (462)
T ss_pred             cEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccc-cccccCCCCceeHHHhccCCcEEEEecchhhcCCccc
Confidence            8888888888886  444   678889999999999999995 55554332111221   1  136779999985  688


Q ss_pred             CCceEEeecCCcchhhH---HHHhhhccCCC-CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCc
Q 013217          238 RGGMIFFKKDPVLGVEL---ESAINNAVFPG-LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGY  313 (447)
Q Consensus       238 ~gG~i~~~~~~~~~~~~---~~~i~~~~~~~-~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  313 (447)
                      |.||+++.++.    ..   .+.+.....+. ..++++.....++..+++......+++..+.+.++++.+.+.|++.+.
T Consensus       284 RiG~~v~~~p~----~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~~~~  359 (462)
T PLN02187        284 KIGWIALNDPE----GVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKDIPC  359 (462)
T ss_pred             eeEEEEecCch----hHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            99999985420    22   22333322221 222334444455555665322233467778888999999999988543


Q ss_pred             Ee-eeCCCCCeeEEecCCC---CCC-CH-HHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHH
Q 013217          314 KL-VSGGSDNHLVLVDLRP---MGI-DG-ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAI  387 (447)
Q Consensus       314 ~~-~~~~~~~~~~~v~~~~---~~~-~~-~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l  387 (447)
                      .. ...+....++|+.+..   .++ +. +.+.+++.++||.+..    |.... ..++|||++..  .    ++.++..
T Consensus       360 ~~~~~~P~gg~fl~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~p----G~~fg-~~~~iRis~~~--~----~e~l~~a  428 (462)
T PLN02187        360 VVCPKKPESCTYLLTKLELSLMDNIKDDIDFCVKLAREENLVFLP----GDALG-LKNWMRITIGV--E----AHMLEDA  428 (462)
T ss_pred             CcCCCCCCEeEEEEeecChhhCCCCCCHHHHHHHHHhhCCEEEEC----ccccC-CCCeEEEEeCC--C----HHHHHHH
Confidence            22 2222345666776532   122 33 3456677899999954    33211 24689998642  2    6777888


Q ss_pred             HHHHHHHHHHH
Q 013217          388 ADFIHEGVEIT  398 (447)
Q Consensus       388 ~~~i~~~l~~~  398 (447)
                      .+.|.++++..
T Consensus       429 l~rL~~~l~~~  439 (462)
T PLN02187        429 LERLKGFCTRH  439 (462)
T ss_pred             HHHHHHHHHHh
Confidence            88887777644

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=99.91  E-value=8.2e-22  Score=190.10  Aligned_cols=318  Identities=22%  Similarity=0.226  Sum_probs=223.7

Q ss_pred             cCeeEecCCCCC--CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC-CCCCccceeeecCCcH-
Q 013217           21 KSLELIASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN-LDENKWGVNVQPLSGS-   96 (447)
Q Consensus        21 ~~i~l~~~~n~~--~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g-~~~~~~~~~v~~~sGs-   96 (447)
                      ..+.|.++||+.  |+.+++++...+..  ..-||..      . ..+++    +.+++++| .+++    +|.++.|+ 
T Consensus        23 ~~i~LssNenP~gp~~~~~~~~~~~~~~--~~rYPd~------~-~~~l~----~a~a~~~~~~~~~----~V~~gnGsd   85 (356)
T COG0079          23 GIIKLSSNENPYGPPPKVIEAIRAALDK--LNRYPDP------D-YRELR----AALAEYYGVVDPE----NVLVGNGSD   85 (356)
T ss_pred             cceeecCCCCCCCCCHHHHHHHHHHHHh--hccCCCC------c-HHHHH----HHHHHHhCCCCcc----eEEEcCChH
Confidence            358899999986  47788887766542  1233332      1 12333    56788888 6654    56669998 


Q ss_pred             HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 013217           97 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG  176 (447)
Q Consensus        97 ~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~  176 (447)
                      +.+..++++++.|||+|++..|.|+.+-.        .+...|.  +++.++.++  +.+|++.+.+.+.+ ++++|+++
T Consensus        86 e~i~~l~~~~~~~gd~vl~~~Ptf~~Y~~--------~a~~~g~--~~~~v~~~~--~~~d~~~~~~~~~~-~~~lv~i~  152 (356)
T COG0079          86 ELIELLVRAFVEPGDTVLIPEPTFSMYEI--------AAQLAGA--EVVKVPLKE--FRLDLDAILAAIRD-KTKLVFLC  152 (356)
T ss_pred             HHHHHHHHHhhcCCCEEEEcCCChHHHHH--------HHHhcCC--eEEEecccc--cccCHHHHHHhhhc-CCCEEEEe
Confidence            88888999999999999999988766521        2234454  555555653  88999999999988 89999999


Q ss_pred             CCCCCC--CCChHHHHHHHHHh--CCEEEEehhhhccccccccCCCCCCcc--cEEEeCCCcc--cCCCCCceEEeecCC
Q 013217          177 ASAYPR--DFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFKYC--DVVTTTTHKS--LRGPRGGMIFFKKDP  248 (447)
Q Consensus       177 ~~~~~~--~~~~~~i~~ia~~~--g~~livD~a~~~g~~~~~~~~~~~~~~--Di~~~s~~K~--l~Gp~gG~i~~~~~~  248 (447)
                      +||||+  .++.++|.+++...  +.+|++|+|+ ..+....... .+...  =+++-|++|.  |+|.|.|+.+.++  
T Consensus       153 nPNNPTG~~~~~~~l~~l~~~~~~~~~vVvDEAY-~eF~~~~~~~-l~~~~~nlivlRTfSKa~gLAGlRlGy~ia~~--  228 (356)
T COG0079         153 NPNNPTGTLLPREELRALLEALPEGGLVVIDEAY-IEFSPESSLE-LLKYPPNLIVLRTFSKAFGLAGLRVGYAIANP--  228 (356)
T ss_pred             CCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCch-hhcCCchhhh-hccCCCCEEEEEecHHhhhcchhceeeccCCH--
Confidence            999997  67788888877755  7899999995 4433311111 01112  3788999997  4799999988888  


Q ss_pred             cchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcE-eeeCCCCCeeEEe
Q 013217          249 VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYK-LVSGGSDNHLVLV  327 (447)
Q Consensus       249 ~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~-~~~~~~~~~~~~v  327 (447)
                          ++.+.+++...|...   +....++..++++..  +..++.++++.+.+.++.+.|...|+. +..  +..+++++
T Consensus       229 ----~~i~~l~~vr~p~~v---~~~a~~aa~aal~~~--~~~~~~~~~~~~~r~rl~~~l~~~~~~~v~p--S~aNFvlv  297 (356)
T COG0079         229 ----ELIAALNKVRPPFNV---SSPALAAAIAALRDA--DYLEESVERIREERERLYAALKALGLFGVFP--SQANFVLV  297 (356)
T ss_pred             ----HHHHHHHHhcCCCCC---CHHHHHHHHHHcccH--HHHHHHHHHHHHHHHHHHHHHHhCCCCeecC--CCCcEEEE
Confidence                899999888766533   223333333333322  335778899999999999999998754 443  33567788


Q ss_pred             cCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          328 DLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       328 ~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      ++.. +. ...+.+.|.++||.++....    .+..+.++||+..   +    ++|.+++.++|.+++.
T Consensus       298 ~~~~-~~-~~~l~~~L~~~giivR~~~~----~~~~~~~lRitvg---t----~een~~ll~AL~~~~~  353 (356)
T COG0079         298 RVPD-AE-AAALAEALLKKGILVRDCSS----VGLLPGYLRITVG---T----PEENDRLLAALREVLK  353 (356)
T ss_pred             ECCC-cc-HHHHHHHHHHCCEEEEeCCC----CCCCCCeEEEEeC---C----HHHHHHHHHHHHHHHh
Confidence            7754 22 45789999999999987521    1233568999865   2    7888999999998876

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.91  E-value=1e-22  Score=199.48  Aligned_cols=316  Identities=19%  Similarity=0.193  Sum_probs=204.6

Q ss_pred             HHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh-cCCCCE
Q 013217           34 RAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPHDR  112 (447)
Q Consensus        34 ~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al-~~pgd~  112 (447)
                      .+.++++.+.+.+.+..        .....++++|    +.+++++|.++     .+.++|||.|+.+++.++ ++|||+
T Consensus         5 ~e~~~~v~~~l~s~~~~--------~~g~~~~~fE----~~~a~~~g~~~-----~~~~~sgt~Al~~al~~l~~~~gde   67 (363)
T PF01041_consen    5 EEEIDAVLEVLRSGWLS--------TYGPYVEEFE----KEFAEYFGVKY-----AVAVSSGTSALHLALRALGLGPGDE   67 (363)
T ss_dssp             HHHHHHHHHHHHHTCCS--------SSSHHHHHHH----HHHHHHHTSSE-----EEEESSHHHHHHHHHHHTTGGTTSE
T ss_pred             HHHHHHHHHHHHhCCcc--------CCCHHHHHHH----HHHHHHhCCCe-----EEEeCChhHHHHHHHHhcCCCcCce
Confidence            45566777777664311        1135678888    57899999876     356699999999999998 799999


Q ss_pred             EEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCCCCChHHHHHH
Q 013217          113 IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQI  192 (447)
Q Consensus       113 Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~~~~~~~i~~i  192 (447)
                      |+++...+.+...        .+...|  .+++.++++++++.+|++++++++++ ++|+|++.+ .++...|+++|.++
T Consensus        68 Vi~p~~t~~~~~~--------ai~~~G--~~pv~~Di~~~~~~id~~~~~~~i~~-~t~ai~~~h-~~G~~~d~~~i~~~  135 (363)
T PF01041_consen   68 VIVPAYTFPATAS--------AILWAG--AEPVFVDIDPETLNIDPEALEKAITP-KTKAILVVH-LFGNPADMDAIRAI  135 (363)
T ss_dssp             EEEESSS-THHHH--------HHHHTT---EEEEE-BETTTSSB-HHHHHHHHHT-TEEEEEEE--GGGB---HHHHHHH
T ss_pred             EecCCCcchHHHH--------HHHHhc--cEEEEEeccCCcCCcCHHHHHHHhcc-CccEEEEec-CCCCcccHHHHHHH
Confidence            9999877655432        344555  48888889999999999999999998 899988863 34446699999999


Q ss_pred             HHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCC--cccCCCCCceEEeecCCcchhhHHHHhhhccCCCCC---
Q 013217          193 ADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQ---  267 (447)
Q Consensus       193 a~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~--K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~---  267 (447)
                      |+++|++||.|++|+.|....+...-.  ..|+.++|+|  |.+.+..||+++++++     ++.+++......+..   
T Consensus       136 ~~~~~i~lIeD~a~a~g~~~~g~~~G~--~gd~~~fSf~~~K~i~~geGG~v~~~~~-----~~~~~~~~~~~~g~~~~~  208 (363)
T PF01041_consen  136 ARKHGIPLIEDAAQAFGARYKGRPVGS--FGDIAIFSFHPTKIITTGEGGAVVTNDP-----ELAERARALRNHGRSRDA  208 (363)
T ss_dssp             HHHTT-EEEEE-TTTTT-EETTEETTS--SSSEEEEESSTTSSS-SSS-EEEEESTH-----HHHHHHHHHTBTTEETSE
T ss_pred             HHHcCCcEEEccccccCceeCCEeccC--CCCceEecCCCCCCCcCCCCeeEEecHH-----HHHHHhhhhhccCcCccc
Confidence            999999999999999997665532222  3688888886  8898889999999986     777766543222210   


Q ss_pred             ----------C-CCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeC--CCC--C-eeEEecCC
Q 013217          268 ----------G-GPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSG--GSD--N-HLVLVDLR  330 (447)
Q Consensus       268 ----------g-~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~--~~~--~-~~~~v~~~  330 (447)
                                | ...+..+.| +.++.++  ..+++..++..++++.+.+.|.+. ++.....  ...  + +.+.+-+.
T Consensus       209 ~~~~~~~~~~g~n~rm~~~~A-Aigl~QL--~~L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~  285 (363)
T PF01041_consen  209 FRRYRHELPPGYNFRMSELQA-AIGLAQL--KRLDEIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLP  285 (363)
T ss_dssp             CSTTEESSSS--B-B-BHHHH-HHHHHHH--HTHHHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEET
T ss_pred             cccccccccCCcccccHHHHH-HHHHHHH--HHhhhhHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccc
Confidence                      0 011112211 1233333  346777888899999999999884 5544432  111  1 12223333


Q ss_pred             CC-CCCHHHHHHHHhhcCeEEccCC-CCCCCCCC-C-----------------CCeEEEecCccccCCCCHHHHHHHHHH
Q 013217          331 PM-GIDGARVEKILDMASITLNKNS-VPGDKSAL-V-----------------PGGIRIGSPAMTTRGFSEKEFVAIADF  390 (447)
Q Consensus       331 ~~-~~~~~~~~~~L~~~gI~v~~~~-~p~~~~~~-~-----------------~~~iRig~~~~~~~g~~~~di~~l~~~  390 (447)
                      +. ..+.+.+.+.|.+.||.++..+ .|.+..+. .                 ...|.+.++.    .|+++|++++++.
T Consensus       286 ~~~~~~rd~l~~~L~~~GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~----~lt~edv~~I~~~  361 (363)
T PF01041_consen  286 DEALADRDELVEALRARGIETRPHYPKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPIHP----RLTEEDVDYIAEA  361 (363)
T ss_dssp             CCGCSTHHHHHHHHHHTTBEEBCSTSSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEHST----TSCHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHCCCcccccccCchhhhHHHHhcCccccCCCHHHHHHHhCeEECcCCC----CCCHHHHHHHhhc
Confidence            21 1357889999999999998754 23321110 0                 0124443332    4669999999998


Q ss_pred             HH
Q 013217          391 IH  392 (447)
Q Consensus       391 i~  392 (447)
                      |+
T Consensus       362 ir  363 (363)
T PF01041_consen  362 IR  363 (363)
T ss_dssp             HH
T ss_pred             cC
Confidence            74

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=99.91  E-value=4.7e-22  Score=199.57  Aligned_cols=275  Identities=15%  Similarity=0.151  Sum_probs=188.8

Q ss_pred             eeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhh
Q 013217           89 NVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL  167 (447)
Q Consensus        89 ~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~  167 (447)
                      +|.+|+|+ +++..++.++++|||.|++.+|.|+++..        .+...|.  +++++++++ + .+|+++++++++.
T Consensus       143 ~Iiit~G~~~al~~~~~~l~~pgd~Vlv~~P~y~~~~~--------~~~~~g~--~~~~v~~~~-~-g~~~~~l~~~~~~  210 (431)
T PRK15481        143 EIDLTSGAIDAIERLLCAHLLPGDSVAVEDPCFLSSIN--------MLRYAGF--SASPVSVDA-E-GMQPEKLERALAQ  210 (431)
T ss_pred             eEEEecCcHHHHHHHHHHhCCCCCEEEEeCCCcHHHHH--------HHHHcCC--eEEeeccCC-C-CCCHHHHHHHHhc
Confidence            45568887 89999999999999999999998876532        2344554  566666653 2 4899999999876


Q ss_pred             hCCcEEEEc-CCCCCC--CCChH---HHHHHHHHh-CCEEEEehhhhccccccccCCCCCC---cccEEEeCCCccc-CC
Q 013217          168 FRPKLIIAG-ASAYPR--DFDYP---RMRQIADAV-GALLMMDMAHISGLVAASVVADPFK---YCDVVTTTTHKSL-RG  236 (447)
Q Consensus       168 ~~~klii~~-~~~~~~--~~~~~---~i~~ia~~~-g~~livD~a~~~g~~~~~~~~~~~~---~~Di~~~s~~K~l-~G  236 (447)
                       ++|+++++ .++||+  ..+.+   +|.++|+++ ++++++|+++ ..+...+. ..++.   ..-+++.|++|++ +|
T Consensus       211 -~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y-~~~~~~~~-~~~~~~~~~~vi~~~SfSK~~~~G  287 (431)
T PRK15481        211 -GARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHF-ALLSSSPY-HSVIPQTTQRWALIRSVSKALGPD  287 (431)
T ss_pred             -CCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCch-hhhccCCC-CCCCcCCCCCEEEEeeeccccCCC
Confidence             89998887 788886  55654   999999999 9999999985 33332221 22222   1348889999987 56


Q ss_pred             CCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHHHHCCcEe
Q 013217          237 PRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-SPEFKVYQNKVVSNCRALASRLVELGYKL  315 (447)
Q Consensus       237 p~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~  315 (447)
                      .|.||++.++      ++.+.+.........+ .+.....+++.+++.-. ....++..+.+.++++.+.+.|.+.|+.+
T Consensus       288 lRiG~~i~~~------~~~~~~~~~~~~~~~~-~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~~~~~  360 (431)
T PRK15481        288 LRLAFVASDS------ATSARLRLRLNSGTQW-VSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQYGIAI  360 (431)
T ss_pred             ceeEEEeCCH------HHHHHHHHHHhccccC-CCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            7779999987      6777765433322222 23333334444554311 01135567778888889999998888765


Q ss_pred             eeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          316 VSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       316 ~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      ..+ ...+++|++++.   +..++.+.|.++||.+..+...+..  ...+++||++....     ++++++.++.|.+++
T Consensus       361 ~~p-~gg~f~~~~l~~---~~~~~~~~l~~~gV~v~pg~~f~~~--~~~~~iRis~~~~~-----~~~i~~~~~~l~~~~  429 (431)
T PRK15481        361 PSP-GDGLNLWLPLDT---DSQATALTLAKSGWLVREGEAFGVS--APSHGLRITLSTLN-----DAEINRLAADLHQAL  429 (431)
T ss_pred             ccC-CCeEEEEEECCC---CHHHHHHHHHHCCcEEecCCccccC--CCCCeEEEEcCCCC-----hHHHHHHHHHHHHHh
Confidence            333 346778888753   3567888888899999654322111  11357999976433     789999999998876


Q ss_pred             H
Q 013217          396 E  396 (447)
Q Consensus       396 ~  396 (447)
                      +
T Consensus       430 ~  430 (431)
T PRK15481        430 N  430 (431)
T ss_pred             c
Confidence            4

>PRK06855 aminotransferase; Validated

Probab=99.91  E-value=1.2e-21  Score=196.12  Aligned_cols=344  Identities=16%  Similarity=0.123  Sum_probs=209.0

Q ss_pred             cCeeEecCCC-----CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecC
Q 013217           21 KSLELIASEN-----FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPL   93 (447)
Q Consensus        21 ~~i~l~~~~n-----~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~   93 (447)
                      ..+.|.-++.     .+|+.+.+++...+.+.-..+|+..      ....++.+...+++.+.+|.+  ++    +|.+|
T Consensus        33 ~~~~~~~G~p~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~------~G~~~LReaia~~~~~~~g~~~~~~----~I~it  102 (433)
T PRK06855         33 KITWENIGDPIAKGEKIPDWMKEIVAELVMDDKSYGYCPT------KGVLETREFLAELNNKRGGAQITPD----DIIFF  102 (433)
T ss_pred             cccccccCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCC------CCCHHHHHHHHHHHHhccCCCCCHh----HEEEc
Confidence            4567754544     4678888888776543211233322      222345555556777766654  43    45568


Q ss_pred             CcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhh-hCC
Q 013217           94 SGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAIL-FRP  170 (447)
Q Consensus        94 sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~-~~~  170 (447)
                      +|+ +++..++ .+++|||.|++.+|.|+++..         ......+.+++++++++ +++.+|+++|+++++. .++
T Consensus       103 ~G~~~al~~~~-~l~~~Gd~Vlv~~P~Y~~~~~---------~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~  172 (433)
T PRK06855        103 NGLGDAIAKIY-GLLRREARVIGPSPAYSTHSS---------AEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYNPSI  172 (433)
T ss_pred             CcHHHHHHHHH-HhcCCCCeEEEeCCCCchHHH---------HHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcCCCc
Confidence            988 7877776 488999999999998876421         11111223556666664 3467999999999874 257


Q ss_pred             cEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC----Cc-ccEEEeCCCccc--CCCC
Q 013217          171 KLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF----KY-CDVVTTTTHKSL--RGPR  238 (447)
Q Consensus       171 klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~----~~-~Di~~~s~~K~l--~Gp~  238 (447)
                      ++++++.|+||+  ..+   +++|.++|+++|+++|+|+++ ..+.+.+....++    +. ..+++.|++|++  +|+|
T Consensus       173 ~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y-~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlR  251 (433)
T PRK06855        173 AGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIY-NNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGSR  251 (433)
T ss_pred             eEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc-cccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcce
Confidence            888888888886  444   567888899999999999995 5555433211121    11 238889999987  6889


Q ss_pred             CceEEeecCC--cchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHHHHC-CcE
Q 013217          239 GGMIFFKKDP--VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-SPEFKVYQNKVVSNCRALASRLVEL-GYK  314 (447)
Q Consensus       239 gG~i~~~~~~--~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  314 (447)
                      .||++.++..  .....+.+.+...... ..+ ++.....++..+++.-. ....++..+.+.++++.+.+.|.+. |+.
T Consensus       252 iG~ii~p~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~  329 (433)
T PRK06855        252 CGWIEVYNADKDEVFKKYINSILNAKMI-EVC-STTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDVPGLK  329 (433)
T ss_pred             EEEEEEeCCchhhHHHHHHHHHHHhhcc-ccC-CChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCee
Confidence            9999984210  0000222333222111 112 23333333344443211 1123556677788888888988774 665


Q ss_pred             eeeCCCCCeeEEecCCCCC--------------------------CCHHH-HHHHHhhcCeEEccCCCCCCCCCCCCCeE
Q 013217          315 LVSGGSDNHLVLVDLRPMG--------------------------IDGAR-VEKILDMASITLNKNSVPGDKSALVPGGI  367 (447)
Q Consensus       315 ~~~~~~~~~~~~v~~~~~~--------------------------~~~~~-~~~~L~~~gI~v~~~~~p~~~~~~~~~~i  367 (447)
                      +..+ ..++++|++++..-                          .+..+ +...+++.||.+.    ||+.......++
T Consensus       330 ~~~p-~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~----PG~~F~~~~~~~  404 (433)
T PRK06855        330 VNRT-NGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVV----PLSSFCTELNGF  404 (433)
T ss_pred             ccCC-CeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEe----cCCcCCCCCCce
Confidence            4432 44677888886420                          11233 3456788999994    444321123469


Q ss_pred             EEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          368 RIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       368 Rig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      ||++... +    ++++++..+.|.+++..
T Consensus       405 Rls~~~~-~----~~~i~~~~~~l~~~~~~  429 (433)
T PRK06855        405 RVTLLER-D----EEKFEWIYQTLAEKIEE  429 (433)
T ss_pred             EEEECCC-c----HHHHHHHHHHHHHHHHH
Confidence            9997642 3    78898888888888764

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.91  E-value=4.3e-22  Score=195.08  Aligned_cols=319  Identities=13%  Similarity=0.110  Sum_probs=206.3

Q ss_pred             CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh-cCC
Q 013217           31 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKP  109 (447)
Q Consensus        31 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al-~~p  109 (447)
                      .+++..++++...+.+.+.        ++..+...++|    +++++++|.+.     .+.++||++|+..++.++ ++|
T Consensus         8 ~~~~~e~~a~~~~~~~~~~--------~~~g~~~~~~e----~~la~~~g~~~-----~v~~~sgt~aL~~~l~al~~~p   70 (376)
T TIGR02379         8 PVTGQELEYIAEAISEGKL--------SGDGPFSRRCE----TWLENRTGTKK-----ALLTPSCTAALEMAALLLDIQP   70 (376)
T ss_pred             CCCHHHHHHHHHHHHcCCc--------cCCcHHHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHcCCCC
Confidence            4566778888877765331        11124456666    57888888864     244567779998888888 899


Q ss_pred             CCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCCCCChHHH
Q 013217          110 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRM  189 (447)
Q Consensus       110 gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~~~~~~~i  189 (447)
                      ||+|+++++.|.+...        .+...|.  +++.++++++++.+|++++++++++ +||+|+.+. .++...|+++|
T Consensus        71 Gd~Viv~~~t~~~~~~--------~~~~~G~--~~v~vd~d~~~~~~d~~~le~~i~~-~tk~Iip~~-~~G~~~d~~~I  138 (376)
T TIGR02379        71 GDEVIMPSYTFVSTAN--------AFVLRGA--KIVFVDIRPDTMNIDETLIESAITH-RTKAIVPVH-YAGVACDMDTI  138 (376)
T ss_pred             cCEEEECCCCcHHHHH--------HHHHcCC--EEEEEecCCCcCCCCHHHHHHhcCc-CceEEEEeC-CCCCccCHHHH
Confidence            9999999988766532        2234454  6667778766788999999999987 899987654 34457899999


Q ss_pred             HHHHHHhCCEEEEehhhhccccccccCCCCCC-cccEEEeCCCc--cc-CCCCCceEEeecCCcchhhHHHHhhhccCCC
Q 013217          190 RQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHK--SL-RGPRGGMIFFKKDPVLGVELESAINNAVFPG  265 (447)
Q Consensus       190 ~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-~~Di~~~s~~K--~l-~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~  265 (447)
                      .++|+++|+++|+|++|+.|....+.   +++ ..|+.++|+|+  .+ +|++||+++++++     ++.+++......|
T Consensus       139 ~~la~~~~i~vIeDaa~~~g~~~~~~---~~g~~~~~~~fSf~~~K~l~~g~~gG~v~~~~~-----~~~~~~~~~~~~g  210 (376)
T TIGR02379       139 MALANKHQLFVIEDAAQGVMSTYKGR---ALGSIGHLGTFSFHETKNYTSGGEGGALLINDQ-----AFIERAEIIREKG  210 (376)
T ss_pred             HHHHHHCCCEEEEECccccCCccCCc---ccCCCCCEEEEeCCCCCcCcccCCceEEEECCH-----HHHHHHHHHHHhC
Confidence            99999999999999999887544332   222 35788888875  45 5779999998865     6666655322111


Q ss_pred             C-----------------CC-CCcHHHH-HHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC---C-cEeee--CCC
Q 013217          266 L-----------------QG-GPHNHTI-GGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL---G-YKLVS--GGS  320 (447)
Q Consensus       266 ~-----------------~g-~p~~~~~-aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---g-~~~~~--~~~  320 (447)
                      .                 .| ...+..+ |++.  +.++  ..+++..++.+++++.+.+.|.+.   + +.+..  ++.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g--~~qL--~~l~~~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~  286 (376)
T TIGR02379       211 TNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYL--WAQL--EQADRINQDRLATWQLYQDALKPLEEKGIIELPSIPNGC  286 (376)
T ss_pred             CCCccccccCCCcceeeeecccCCccHHHHHHH--HHHH--HHhHHHHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCC
Confidence            0                 01 1111112 2222  2222  235666777888888888888653   2 22211  111


Q ss_pred             --CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCC----CC-------------CCeEEEecCccccCCCCH
Q 013217          321 --DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSA----LV-------------PGGIRIGSPAMTTRGFSE  381 (447)
Q Consensus       321 --~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~----~~-------------~~~iRig~~~~~~~g~~~  381 (447)
                        ..+++++.+.. +.+.+++.+.|.++||.++..+.|.+..+    +.             ...|.+.++    -+|++
T Consensus       287 ~~~~~~~~i~~~~-~~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~~----~~l~~  361 (376)
T TIGR02379       287 QHNAHMFYIKLKD-EDDRNELIKYLKEQEIMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLPLY----YGLSK  361 (376)
T ss_pred             eeeeEEEEEEECC-cCCHHHHHHHHHHCCCCccccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEccCC----CCCCH
Confidence              12344455433 34678999999999999876555554321    10             112333322    25779


Q ss_pred             HHHHHHHHHHHHHH
Q 013217          382 KEFVAIADFIHEGV  395 (447)
Q Consensus       382 ~di~~l~~~i~~~l  395 (447)
                      +|++++++.|++++
T Consensus       362 ~~~~~i~~~i~~~~  375 (376)
T TIGR02379       362 EDQARVIQTICDYL  375 (376)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998764

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PRK10534 L-threonine aldolase; Provisional

Probab=99.91  E-value=4e-22  Score=193.45  Aligned_cols=319  Identities=16%  Similarity=0.162  Sum_probs=201.6

Q ss_pred             eeEecCCCC-CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHH
Q 013217           23 LELIASENF-TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE  101 (447)
Q Consensus        23 i~l~~~~n~-~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~  101 (447)
                      |.|..++|+ +||.+++++.......       .+ |+......+++    +.+++++|.++.     +.+++|++++..
T Consensus         2 ~~~~~~~~~~p~~~~~~a~~~~~~~~-------~~-Y~~~~~~~~L~----~~la~~~g~~~~-----~v~~~g~~a~~~   64 (333)
T PRK10534          2 IDLRSDTVTRPSRAMLEAMMAAPVGD-------DV-YGDDPTVNALQ----DYAAELSGKEAA-----LFLPTGTQANLV   64 (333)
T ss_pred             cccccccCCCCCHHHHHHHHhccCCC-------cc-cCCCHHHHHHH----HHHHHHhCCCeE-----EEeCchHHHHHH
Confidence            556667775 5789999986533321       12 33334455666    578889998763     334677788888


Q ss_pred             HHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh-----CCcEEEEc
Q 013217          102 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIAG  176 (447)
Q Consensus       102 ~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~-----~~klii~~  176 (447)
                      ++.+++.|||+|+++.+.|...+..+      .....+ ..+.++++++ +++.+|+++|++++++.     ++++|+++
T Consensus        65 ~l~~~~~~gd~vi~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~  136 (333)
T PRK10534         65 ALLSHCERGEEYIVGQAAHNYLYEAG------GAAVLG-SIQPQPIDAA-ADGTLPLDKVAAKIKPDDIHFARTRLLSLE  136 (333)
T ss_pred             HHHHhcCCCCeeEEechhhhhHhcCC------chHHhc-CceEEeecCC-CCCCCCHHHHHHhhcccCcCcccceEEEEe
Confidence            88888999999998776653221110      011222 1344555555 46889999999988653     58899988


Q ss_pred             CCCCCCCCChH---HHHHHHHHhCCEEEEehhhhcccccc-ccCCCCC-CcccEEEeCCCcccCCCCCceEEeecCCcch
Q 013217          177 ASAYPRDFDYP---RMRQIADAVGALLMMDMAHISGLVAA-SVVADPF-KYCDVVTTTTHKSLRGPRGGMIFFKKDPVLG  251 (447)
Q Consensus       177 ~~~~~~~~~~~---~i~~ia~~~g~~livD~a~~~g~~~~-~~~~~~~-~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~  251 (447)
                      +++++...+.+   +|.++|+++|+++++|+++..+.... +.....+ .+.|.++.|+||.++.+.||+++.++     
T Consensus       137 np~~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~~G~~~~~~~-----  211 (333)
T PRK10534        137 NTHNGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNR-----  211 (333)
T ss_pred             cCCCCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHHhcCCEEEEEeEcCCCCcccceEEcCH-----
Confidence            77765566654   55678899999999999976432110 1100001 13466667899988766666787776     


Q ss_pred             hhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCC
Q 013217          252 VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRP  331 (447)
Q Consensus       252 ~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~  331 (447)
                       ++.+.+.....+.. ++.+....+ .++++..+.  ...+++++..++++++.+.|.+.|+++..+  .++++++++..
T Consensus       212 -~~i~~~~~~~~~~~-~~~~~~~~~-~a~~~~~l~--~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~--~~nfv~~~~~~  284 (333)
T PRK10534        212 -DYIKRARRWRKMTG-GGMRQAGIL-AAAGLYALK--HNVARLQEDHDNAAWLAEQLREAGADVMRQ--DTNMLFVRVGE  284 (333)
T ss_pred             -HHHHHHHHHHHHhC-CchhhHHHH-HHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHhCCCccCCC--CceEEEEECCc
Confidence             67777765433221 111211111 111222221  123445566677889999999999887643  46677777753


Q ss_pred             CCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          332 MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       332 ~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                        .+..++.+.|.++||.++.    +       ..+|++...-.    ++++++++.+.|++.+
T Consensus       285 --~~~~~~~~~l~~~gi~v~~----~-------~~~rl~~~~r~----t~e~~~~~~~~l~~~~  331 (333)
T PRK10534        285 --EQAAALGEYMRERNVLINA----S-------PIVRLVTHLDV----SREQLAEVVAHWRAFL  331 (333)
T ss_pred             --hhHHHHHHHHHHcCeeecC----C-------ceEEEEEEeCC----CHHHHHHHHHHHHHHh
Confidence              2456788999999999953    2       15888764323    4999999999997654

>PRK09105 putative aminotransferase; Provisional

Probab=99.91  E-value=1.1e-21  Score=192.61  Aligned_cols=311  Identities=17%  Similarity=0.128  Sum_probs=209.8

Q ss_pred             cCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-H
Q 013217           21 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P   97 (447)
Q Consensus        21 ~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~   97 (447)
                      ..+.|..++|+  +|+.+++++...+..  ...||.      .. ..++    ++.+++.+|+++++    |.+++|+ +
T Consensus        44 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~--~~~Y~~------~~-~~~L----r~aia~~~~v~~e~----I~it~Gs~~  106 (370)
T PRK09105         44 GAVFLNANECPLGPSPAARDAAARSAAL--SGRYDL------EL-EDDL----RTLFAAQEGLPADH----VMAYAGSSE  106 (370)
T ss_pred             CcEEecCCCCCCCCCHHHHHHHHHHHHH--hcCCCC------ch-HHHH----HHHHHHHhCcChhh----EEEcCChHH
Confidence            45788888884  578999998876532  112221      11 2333    35677888998864    4458887 8


Q ss_pred             HHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcC
Q 013217           98 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA  177 (447)
Q Consensus        98 a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~  177 (447)
                      ++..++.++++|||+|++++|.|+++..        .+...|.  +++.++.+ +++.+|++++++. .+ ++++|++++
T Consensus       107 ai~~~~~~l~~~gd~Vli~~P~y~~~~~--------~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~-~~-~~~~v~l~n  173 (370)
T PRK09105        107 PLNYAVLAFTSPTAGLVTADPTYEAGWR--------AADAQGA--PVAKVPLR-ADGAHDVKAMLAA-DP-NAGLIYICN  173 (370)
T ss_pred             HHHHHHHHHcCCCCEEEEeCCChHHHHH--------HHHHcCC--eEEEecCC-CCCCCCHHHHHhc-CC-CCCEEEEeC
Confidence            9999999999999999999998876532        2334454  55555565 3577999999876 34 789999988


Q ss_pred             CCCCC--CCChHHHHHHHHH--hCCEEEEehhhhccccccccCCCCCC----ccc-EEEeCCCccc--CCCCCceEEeec
Q 013217          178 SAYPR--DFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK----YCD-VVTTTTHKSL--RGPRGGMIFFKK  246 (447)
Q Consensus       178 ~~~~~--~~~~~~i~~ia~~--~g~~livD~a~~~g~~~~~~~~~~~~----~~D-i~~~s~~K~l--~Gp~gG~i~~~~  246 (447)
                      |+||+  ..+.+++.++++.  +|+++|+|+++. .+...   ++...    +.+ +++.|++|++  +|.|.|++++++
T Consensus       174 P~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~-~f~~~---~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~  249 (370)
T PRK09105        174 PNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYI-HFSDA---PSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARP  249 (370)
T ss_pred             CCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchH-HhccC---cchHHHHhhCCCEEEEecccHhhcCCccceeeeecCH
Confidence            88886  7788888887764  489999999973 22211   11111    223 6678999986  578889999987


Q ss_pred             CCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEE
Q 013217          247 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVL  326 (447)
Q Consensus       247 ~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~  326 (447)
                            ++.+.+... ..   ..++.....+...++..  ....++..+++.++++.+.+.|.+.|+++..+ ..+ +++
T Consensus       250 ------~~i~~l~~~-~~---~~~~~~~~~aa~~~L~~--~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~-~~~-f~~  315 (370)
T PRK09105        250 ------DLLAKLARF-GH---NPLPVPAAAAGLASLRD--PKLVPQRRAENAAVREDTIAWLKKKGYKCTPS-QAN-CFM  315 (370)
T ss_pred             ------HHHHHHHhc-CC---CCcCHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCC-CCc-EEE
Confidence                  677777654 11   12333333333334432  12336667788888999999999888876543 233 445


Q ss_pred             ecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          327 VDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       327 v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      +++.   .+..++.+.|.+.||.+.... +     ..++++|+++.   +    +++++++.++|++++
T Consensus       316 ~~~~---~~~~~l~~~L~~~gI~v~~~~-~-----~~~~~~Ris~~---~----~~~~~~l~~al~~~~  368 (370)
T PRK09105        316 VDVK---RPAKAVADAMAKQGVFIGRSW-P-----IWPNWVRVTVG---S----EEEMAAFRSAFAKVM  368 (370)
T ss_pred             EeCC---CCHHHHHHHHHHCCcEEecCC-C-----CCCCeEEEEcC---C----HHHHHHHHHHHHHHh
Confidence            6653   356788888888899984321 1     12468999955   3    788999999988765

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.91  E-value=1.1e-21  Score=190.74  Aligned_cols=313  Identities=17%  Similarity=0.197  Sum_probs=210.6

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccc
Q 013217           56 RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRV  135 (447)
Q Consensus        56 ~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~  135 (447)
                      ..|+|.+....+|    +.+++++|.++     .|.++||+.|+..++...++|||.|  +...+...   .    ...+
T Consensus        72 d~Yagd~s~~~LE----~~vAe~lG~e~-----aV~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~T---t----~ahI  133 (460)
T PRK13237         72 EAYAGSRNFYHLE----ETVQEYYGFKH-----VVPTHQGRGAENLLSRIAIKPGQYV--PGNMYFTT---T----RYHQ  133 (460)
T ss_pred             hhhcCCCcHHHHH----HHHHHHHCCCe-----EEEeCCHHHHHHHHHHhCCCCcCEE--CCccchHh---h----HHHH
Confidence            3356677788898    57888999986     3556899999887766568999976  32222111   0    0112


Q ss_pred             ccccceeEEEecc---------cCCCCCCCCHHHHHHHhhhhC---CcEEEEc--CCCCCC-C---CChHHHHHHHHHhC
Q 013217          136 SGTSIYFESMPYR---------LDESTGLVDYDMLEKTAILFR---PKLIIAG--ASAYPR-D---FDYPRMRQIADAVG  197 (447)
Q Consensus       136 ~~~g~~~~~~~~~---------~~~~~~~id~~~l~~~~~~~~---~klii~~--~~~~~~-~---~~~~~i~~ia~~~g  197 (447)
                      ...|.  .++.+.         .++.++.+|+++|++++++..   +++|.+.  .+.+++ +   .+++++.++|++||
T Consensus       134 ~~~Ga--~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~G  211 (460)
T PRK13237        134 ELNGG--IFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHG  211 (460)
T ss_pred             HhCCc--EEEeeecccccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcC
Confidence            33343  233221         235678999999999997632   2333332  222323 3   37899999999999


Q ss_pred             CEEEEehhhhcc---cc---ccccCCCC--------CCcccEEEeCCCcccCCCCCceEEeecCCcchhhHHHHhhhc--
Q 013217          198 ALLMMDMAHISG---LV---AASVVADP--------FKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNA--  261 (447)
Q Consensus       198 ~~livD~a~~~g---~~---~~~~~~~~--------~~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~--  261 (447)
                      ++|+.|+||+.|   ++   ..+....+        +.++|.+++|+||.+.++.||+|+++++     ++.++++..  
T Consensus       212 l~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~GG~i~t~D~-----eL~~~~r~~~~  286 (460)
T PRK13237        212 IKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNIGGFLAMNDE-----ELFDEAKELVV  286 (460)
T ss_pred             CEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCCceEEEECCH-----HHHHHHHHhcc
Confidence            999999999988   33   11222222        2368999999999999999999999986     888888765  


Q ss_pred             cCCCC--CCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCC-------
Q 013217          262 VFPGL--QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPM-------  332 (447)
Q Consensus       262 ~~~~~--~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~-------  332 (447)
                      .++|+  +|+...-.+.|+++++.+....   +|.++..++.++|.+.|.+.|++++.+ +..|.+++|....       
T Consensus       287 ~~eG~~tygg~~grd~~alAvgl~E~~~~---~y~~~ri~~~~~l~~~L~~~Gvpv~~p-~ggH~v~vda~~~lph~~~~  362 (460)
T PRK13237        287 VYEGMPSYGGMAGRDMEAMAIGIEESVQY---EYIEHRVGQVRYLGEKLLAAGVPIVEP-VGGHAVFLDARRFLPHLPQD  362 (460)
T ss_pred             ccCCCcCCCChhhhHHHHHHhHHHhhchH---HHHHHHHHHHHHHHHHHHHCCCceecC-CCceEEEEEhHHhCCCCCcc
Confidence            45554  3444445788999999887643   678888999999999999999999875 4578888875431       


Q ss_pred             CCCHHHHHHHH-hhcCeEEc-cCCC-----CCCCCCCCC--CeEEEecCccccCCCCHHHHHHHHHHHHHHHHHHHH
Q 013217          333 GIDGARVEKIL-DMASITLN-KNSV-----PGDKSALVP--GGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLE  400 (447)
Q Consensus       333 ~~~~~~~~~~L-~~~gI~v~-~~~~-----p~~~~~~~~--~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~~  400 (447)
                      ...++.+...| .+.||... .+++     |.......+  .-+|+..|.   |-.+.+.|+++++.+..+.++...
T Consensus       363 ~~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaipr---r~yt~~h~~~v~~~~~~~~~~~~~  436 (460)
T PRK13237        363 QFPAQALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIPR---RVYTYAHMDVVADSVIKLYKHRED  436 (460)
T ss_pred             cChHHHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeeecccc---ccccHHHHHHHHHHHHHHHHhHhh
Confidence            12344454444 56777532 1221     211111111  358987653   445689999999999998887643

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.91  E-value=2.4e-21  Score=196.66  Aligned_cols=330  Identities=14%  Similarity=0.074  Sum_probs=204.2

Q ss_pred             CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCcH-HHHHHHHHHhc-C
Q 013217           33 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGS-PANFEVYTAIL-K  108 (447)
Q Consensus        33 ~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sGs-~a~~~~~~al~-~  108 (447)
                      |..+++++...+... . +  +...|+......++.+...+++.+..|.+  ++    +|.+|+|+ +++..++.+++ +
T Consensus        90 P~~~~~~~~~~~~~~-~-~--~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~----~I~it~Ga~~al~~~~~~l~~~  161 (481)
T PTZ00377         90 PADVVARAKEYLNAI-G-G--GTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPS----DIFLTDGASSGIKLLLQLLIGD  161 (481)
T ss_pred             CHHHHHHHHHHHHhC-C-C--cccCcCcccCCHHHHHHHHHHHHHhcCCCCChh----hEEEcCCHHHHHHHHHHHhccC
Confidence            557777776554431 1 0  11112333334456655566777666654  43    45568887 89999999998 7


Q ss_pred             CCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-CCCCCHHHHHHHhhhh-----CCcEEEEcCCCCCC
Q 013217          109 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILF-----RPKLIIAGASAYPR  182 (447)
Q Consensus       109 pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~~~~~-----~~klii~~~~~~~~  182 (447)
                      |||+|++.+|.|.++..        .+...|.  ++++++++++ ++.+|++++++++++.     +||+|+++.|+||+
T Consensus       162 ~gD~Vlv~~P~y~~y~~--------~~~~~g~--~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPT  231 (481)
T PTZ00377        162 PSDGVMIPIPQYPLYSA--------AITLLGG--KQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPT  231 (481)
T ss_pred             CCCEEEECCCCchhHHH--------HHHHcCC--EEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCC
Confidence            99999999998876532        2345554  5556666643 4689999999988642     78988887788886


Q ss_pred             --CCC---hHHHHHHHHHhCCEEEEehhhhccccccc--cCCCC------CC-c-----ccEEEeCCCccc---CCCCCc
Q 013217          183 --DFD---YPRMRQIADAVGALLMMDMAHISGLVAAS--VVADP------FK-Y-----CDVVTTTTHKSL---RGPRGG  240 (447)
Q Consensus       183 --~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~--~~~~~------~~-~-----~Di~~~s~~K~l---~Gp~gG  240 (447)
                        ..+   +++|.++|+++|+++|+|+++ ..+.+.+  .+.+.      +. .     .-+++.|++|++   +|+|.|
T Consensus       232 G~~~s~e~~~~i~~~a~~~~~~iI~De~Y-~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG  310 (481)
T PTZ00377        232 GQVLTRDVMEEIIKFCYEKGIVLMADEVY-QENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGG  310 (481)
T ss_pred             CcCCCHHHHHHHHHHHHHCCCEEEEehhh-HhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceE
Confidence              555   789999999999999999996 4444321  11110      11 0     126778999974   589999


Q ss_pred             eEEe---ecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHh--cCh---hH----HHHHHHHHHHHHHHHHHH
Q 013217          241 MIFF---KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHA--QSP---EF----KVYQNKVVSNCRALASRL  308 (447)
Q Consensus       241 ~i~~---~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~--~~~---~~----~~~~~~~~~~~~~l~~~L  308 (447)
                      |+++   ++      ++.+.+...... ..+ ++.....+...+++..  ...   .+    +...+.+.++++.+.+.|
T Consensus       311 ~~~~~~~p~------~li~~l~~~~~~-~~~-~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L  382 (481)
T PTZ00377        311 YFELTNIPP------EVREQIYKLASI-NLC-SNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDEL  382 (481)
T ss_pred             EEEEeCCCH------HHHHHHHHHhhe-ecC-CChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9987   44      677777654322 222 3333333334444310  011   12    222233567778888888


Q ss_pred             HHC-CcEeeeCCCCCeeEEecCCC-CC---------C--CHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccc
Q 013217          309 VEL-GYKLVSGGSDNHLVLVDLRP-MG---------I--DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMT  375 (447)
Q Consensus       309 ~~~-g~~~~~~~~~~~~~~v~~~~-~~---------~--~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~  375 (447)
                      .+. |+++..+ ...+++|+++.. .+         +  +...+...|++.||.+..+...+.  ....+++|+++.  +
T Consensus       383 ~~~~g~~~~~p-~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~--~~~~~~~Rls~~--~  457 (481)
T PTZ00377        383 NKIEGVSCQPV-EGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQ--KPGTYHFRITIL--P  457 (481)
T ss_pred             hcCCCcEeecC-CeeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCC--CCCCCEEEEEEC--C
Confidence            874 7777643 345667766531 11         1  112346778889999954322211  112358999975  4


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHH
Q 013217          376 TRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       376 ~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      +    ++++++..+.|.++++..
T Consensus       458 ~----~e~l~~~l~rl~~~~~~~  476 (481)
T PTZ00377        458 P----EEQIEEMVKKIKEFHESF  476 (481)
T ss_pred             C----HHHHHHHHHHHHHHHHHH
Confidence            4    788888888888877643

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=99.91  E-value=5.5e-21  Score=190.16  Aligned_cols=338  Identities=18%  Similarity=0.114  Sum_probs=207.9

Q ss_pred             hhcCeeEecCCC------CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC------CCCcc
Q 013217           19 QFKSLELIASEN------FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL------DENKW   86 (447)
Q Consensus        19 ~~~~i~l~~~~n------~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~------~~~~~   86 (447)
                      ..+.++|..+..      ++++.+++++...+......+|+..      .....+.    +.++++++.      +++  
T Consensus        30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~~~Y~~~------~g~~~lr----~~ia~~l~~~~~~~~~~~--   97 (403)
T TIGR01265        30 EKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFNGYAPS------VGALAAR----EAVAEYLSSDLPGKLTAD--   97 (403)
T ss_pred             CCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCCCCCCCC------CCCHHHH----HHHHHHHHhhcCCCCCHH--
Confidence            456788876653      4578999999887765432334221      1122333    344445542      333  


Q ss_pred             ceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHH
Q 013217           87 GVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKT  164 (447)
Q Consensus        87 ~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~  164 (447)
                        +|..++|+ +|+..++.++.++||+|++.+|.|..+..        .+...|.  +++.+++++ +++.+|+++++++
T Consensus        98 --~ii~t~G~t~al~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~  165 (403)
T TIGR01265        98 --DVVLTSGCSQAIEICIEALANPGANILVPRPGFPLYDT--------RAAFSGL--EVRLYDLLPEKDWEIDLDGLEAL  165 (403)
T ss_pred             --HEEEecChHHHHHHHHHHhCCCCCEEEEeCCCchhHHH--------HHHHcCC--EEEEecCCcccCCccCHHHHHHH
Confidence              34446665 89999999999999999999988764321        1233443  445555543 3568999999998


Q ss_pred             hhhhCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC----c-ccEEEeCCCccc
Q 013217          165 AILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----Y-CDVVTTTTHKSL  234 (447)
Q Consensus       165 ~~~~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~----~-~Di~~~s~~K~l  234 (447)
                      +.+ +++++++++++||+  ..+   +++|.++|+++|+++++|+++ ..+.+.+....++.    . --+++.|++|.+
T Consensus       166 ~~~-~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~  243 (403)
T TIGR01265       166 ADE-KTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIY-GHMVFGDAPFIPMASFASIVPVLSLGGISKRW  243 (403)
T ss_pred             hCc-CccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccc-cccccCCCCccchhhhccCCcEEEEeeccccc
Confidence            876 78999888777775  444   789999999999999999985 44443331111111    1 126779999984


Q ss_pred             --CCCCCceEEeecCCc-chhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC
Q 013217          235 --RGPRGGMIFFKKDPV-LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL  311 (447)
Q Consensus       235 --~Gp~gG~i~~~~~~~-~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  311 (447)
                        +|.|.|++++.++.. ...++.+.+...... .. +++.....++..++.......+++..+++.++++.+.+.|+..
T Consensus       244 ~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  321 (403)
T TIGR01265       244 VVPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQR-IL-GPATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKDI  321 (403)
T ss_pred             CCCcceEEEEEEeCchhhhHHHHHHHHHHHhhh-hc-CCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence              677889999853200 000133333332111 11 2333344444445543222234667788888889999999875


Q ss_pred             -CcEeeeCCCCCeeEEecCCCCC----CCHHHHHHH-HhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHH
Q 013217          312 -GYKLVSGGSDNHLVLVDLRPMG----IDGARVEKI-LDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFV  385 (447)
Q Consensus       312 -g~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~-L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~  385 (447)
                       |+.+..+ ..+.++|+++....    .+..++.+. ++++||.+..+...+     ..++||+++..  .    ++.++
T Consensus       322 ~~~~~~~p-~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~-----~~~~iRis~~~--~----~~~l~  389 (403)
T TIGR01265       322 PGLVCPKP-EGAMYLMVKLELELFPEIKDDVDFCEKLVREESVICLPGSAFG-----LPNWVRITITV--P----ESMLE  389 (403)
T ss_pred             CCceecCC-CceeEEEEeccccccCCCCCHHHHHHHHHHhCCEEEeCccccC-----CCCeEEEEecC--C----HHHHH
Confidence             7764333 45667788775321    245666555 578999995432221     25689999652  2    56666


Q ss_pred             HHHHHHHHHHH
Q 013217          386 AIADFIHEGVE  396 (447)
Q Consensus       386 ~l~~~i~~~l~  396 (447)
                      +..+.|.++++
T Consensus       390 ~~l~~l~~~~~  400 (403)
T TIGR01265       390 EACSRIKEFCE  400 (403)
T ss_pred             HHHHHHHHHHH
Confidence            66666666553

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.91  E-value=4.4e-22  Score=195.41  Aligned_cols=315  Identities=16%  Similarity=0.113  Sum_probs=204.7

Q ss_pred             cCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeec-CCcH-
Q 013217           21 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQP-LSGS-   96 (447)
Q Consensus        21 ~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~-~sGs-   96 (447)
                      ..|+|..++|+  .+|.+++++...+...  .+||..      . ..++    ++.+++++|++++.    +.+ ++|+ 
T Consensus        35 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~--~~y~~~------~-~~~l----r~~ia~~~~~~~~~----i~~~~~Ga~   97 (361)
T PRK00950         35 SIIKLGSNENPLGPSPKAVEAIEKELSKI--HRYPEP------D-APEL----REALSKYTGVPVEN----IIVGGDGMD   97 (361)
T ss_pred             ceEEccCCCCCCCCCHHHHHHHHHHHHhh--cCCCCC------C-HHHH----HHHHHHHhCCCHHH----EEEeCCCHH
Confidence            45888888775  4678888887655431  234332      1 1334    35678888988753    334 6887 


Q ss_pred             HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 013217           97 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG  176 (447)
Q Consensus        97 ~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~  176 (447)
                      +++..++.++++|||+|++.+|.|..+..        .+...|.  +++.++.+ +++.+|++++++.++. ++++|+++
T Consensus        98 ~~i~~~~~~~~~~gd~vlv~~p~y~~~~~--------~~~~~g~--~~~~~~~~-~~~~~~~~~l~~~~~~-~~~~v~~~  165 (361)
T PRK00950         98 EVIDTLMRTFIDPGDEVIIPTPTFSYYEI--------SAKAHGA--KPVYAKRE-EDFSLDVDSVLNAITE-KTKVIFLC  165 (361)
T ss_pred             HHHHHHHHHhcCCCCEEEEcCCChHHHHH--------HHHHcCC--EEEEeecC-CCCCcCHHHHHHHhcc-CCCEEEEe
Confidence            67777888889999999999987654321        1233454  44555444 4568999999998876 89998888


Q ss_pred             CCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCc--ccEEEeCCCcccC--CCCCceEEeecCCcc
Q 013217          177 ASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKY--CDVVTTTTHKSLR--GPRGGMIFFKKDPVL  250 (447)
Q Consensus       177 ~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~--~Di~~~s~~K~l~--Gp~gG~i~~~~~~~~  250 (447)
                      +++||+  ..+.+++.++|+++|+++++|++|. ++....... ....  .-+++.|++|.++  |.|.|++++++    
T Consensus       166 ~p~nptG~~~~~~~l~~l~~~~~~~li~De~y~-~~~~~~~~~-~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~----  239 (361)
T PRK00950        166 TPNNPTGNLIPEEDIRKILESTDALVFVDEAYV-EFAEYDYTP-LALEYDNLIIGRTFSKVFGLAGLRIGYGFVPE----  239 (361)
T ss_pred             CCCCCCCCCcCHHHHHHHHHHCCcEEEEECchh-hhCccchHH-HHHhcCCEEEEEeehHhhcCchhhcchhcCCH----
Confidence            777775  7899999999999999999999974 332111100 0111  2377789999874  66779999987    


Q ss_pred             hhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChh-HHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecC
Q 013217          251 GVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPE-FKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDL  329 (447)
Q Consensus       251 ~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~  329 (447)
                        ++.+.+.....+..   .+....++...++.   ..+ +++..++..++++.+.+.|.   +.+..  +.+.++|+++
T Consensus       240 --~~~~~~~~~~~~~~---~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~l~---~~~~~--~~~~~i~~~~  306 (361)
T PRK00950        240 --WLIDYYMRAKTPFS---LTRLSQAAAIAALS---DKEYIEKSIEHGIKSREYLYNELP---FKVYP--SEANFVLVDV  306 (361)
T ss_pred             --HHHHHHHHhcCCCC---CCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhhcC---eeECC--CcceEEEEEC
Confidence              67766665433322   22222322222332   223 34445555555555555553   55433  3456678877


Q ss_pred             CCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          330 RPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       330 ~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      .  +.+..++.+.|.++||.+..+...   ....++++|+++.   +    .+|++++.++|++++
T Consensus       307 ~--~~~~~~~~~~l~~~gv~v~~~~~f---~~~~~~~lRis~~---~----~~~~~~l~~~L~~il  360 (361)
T PRK00950        307 T--PMTAKEFCEELLKRGVIVRDCTSF---RGLGDYYIRVSIG---T----FEENERFLEILKEIV  360 (361)
T ss_pred             C--CCCHHHHHHHHHHCCEEEeeCCcc---CCCCCCeEEEECC---C----HHHHHHHHHHHHHHh
Confidence            3  457788999998899999653211   1123468999965   3    789999999998765

>PRK03321 putative aminotransferase; Provisional

Probab=99.91  E-value=5.4e-22  Score=194.06  Aligned_cols=314  Identities=17%  Similarity=0.148  Sum_probs=211.7

Q ss_pred             cCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-H
Q 013217           21 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P   97 (447)
Q Consensus        21 ~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~   97 (447)
                      +.|+|..+++.  .++.+++++.+.+..  ...||..    |   ...++    +.+++++|++++    +|.+++|+ +
T Consensus        23 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~--~~~y~~~----g---~~~lr----~~ia~~~~~~~~----~I~~~~G~~~   85 (352)
T PRK03321         23 GAIKLSSNETPFGPLPSVRAAIARAAAG--VNRYPDM----G---AVELR----AALAEHLGVPPE----HVAVGCGSVA   85 (352)
T ss_pred             cceeccCCCCCCCCCHHHHHHHHHHHHh--cCcCCCC----c---HHHHH----HHHHHHhCcCHH----HEEECCCHHH
Confidence            45788877774  467899998876643  1234321    1   23443    577888888765    34458888 6


Q ss_pred             HHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcC
Q 013217           98 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA  177 (447)
Q Consensus        98 a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~  177 (447)
                      ++..++.++++|||+|++..|.+..+..        .+...|.  +++.++.++ ++.+|++++++.+++ ++++|+++.
T Consensus        86 ~l~~~~~~~~~~gd~Vli~~p~y~~~~~--------~~~~~g~--~~~~v~~~~-~~~~~~~~l~~~~~~-~~~~v~l~~  153 (352)
T PRK03321         86 LCQQLVQATAGPGDEVIFAWRSFEAYPI--------LVQVAGA--TPVQVPLTP-DHTHDLDAMAAAITD-RTRLIFVCN  153 (352)
T ss_pred             HHHHHHHHhcCCCCEEEeCCCCHHHHHH--------HHHHcCC--EEEEccCCC-CCCCCHHHHHHhhcc-CCCEEEEeC
Confidence            7777788889999999998876543211        1233444  555666653 477999999999876 899999887


Q ss_pred             CCCCC--CCChHHHHHHHHH--hCCEEEEehhhhccccccccCCCCCC----c-ccEEEeCCCccc--CCCCCceEEeec
Q 013217          178 SAYPR--DFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK----Y-CDVVTTTTHKSL--RGPRGGMIFFKK  246 (447)
Q Consensus       178 ~~~~~--~~~~~~i~~ia~~--~g~~livD~a~~~g~~~~~~~~~~~~----~-~Di~~~s~~K~l--~Gp~gG~i~~~~  246 (447)
                      ++||+  ..+.+++.++|+.  +|+++++|+++. .+...+..+.++.    . --+++.|++|.+  +|.|.|++++++
T Consensus       154 p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~  232 (352)
T PRK03321        154 PNNPTGTVVTPAELARFLDAVPADVLVVLDEAYV-EYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVGHP  232 (352)
T ss_pred             CCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHH-HhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhhhcCCH
Confidence            88876  7799999999987  599999999963 4443322111111    1 236778999987  477889999987


Q ss_pred             CCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEE
Q 013217          247 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVL  326 (447)
Q Consensus       247 ~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~  326 (447)
                            ++.+.+.+...+.   +.+.....+...++..  ...+.+..++..++++.+.+.|.+.|+.+..+  ...++|
T Consensus       233 ------~~~~~~~~~~~~~---~~s~~~q~~a~~~l~~--~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~--~g~~i~  299 (352)
T PRK03321        233 ------EVIAALRKVAVPF---SVNSLAQAAAIASLAA--EDELLERVDAVVAERDRVRAALRAAGWTVPPS--QANFVW  299 (352)
T ss_pred             ------HHHHHHHHhcCCC---CCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCccCCC--CCCEEE
Confidence                  7777776643222   2233333323334432  23345556667777788889998888765432  345677


Q ss_pred             ecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          327 VDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       327 v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      +++..   +..++.+.|.++||.+..    .     ...+|||++   ++    .++++++.++|++++.
T Consensus       300 i~l~~---~~~~~~~~l~~~gI~v~~----~-----~~~~iRi~~---~~----~~~~~~~~~al~~~~~  350 (352)
T PRK03321        300 LPLGE---RTADFAAAAAEAGVVVRP----F-----AGEGVRVTI---GA----PEENDAFLRAARAWRA  350 (352)
T ss_pred             EeCCC---CHHHHHHHHHHCCEEEEc----c-----CCCcEEEee---CC----HHHHHHHHHHHHHHhc
Confidence            77632   467788889999999853    1     234699985   34    8999999999987653

>PRK09148 aminotransferase; Validated

Probab=99.91  E-value=8.4e-21  Score=188.76  Aligned_cols=340  Identities=13%  Similarity=0.083  Sum_probs=209.2

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCc
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSG   95 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sG   95 (447)
                      +..|+|..+++.  +|+.+++++.+.+.+....+|+..   .|   ...+.+...+++.+.+|.+  +++   +|.+|+|
T Consensus        30 ~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~---~G---~~~lr~aia~~~~~~~g~~~~~~~---~I~it~G  100 (405)
T PRK09148         30 ADIIDLGMGNPDLPTPQHIVDKLCETAQDPRTHRYSAS---KG---IPGLRRAQAAYYARRFGVKLNPDT---QVVATLG  100 (405)
T ss_pred             CCeEEcCCCCCCCCCCHHHHHHHHHHHcCcccCCCCCC---CC---CHHHHHHHHHHHHHHhCCCCCCCC---cEEEcCC
Confidence            456888766663  467888887766543211233332   11   2345545556666666754  431   3556888


Q ss_pred             H-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCC-CCCCHHHHHHHhhhhCCcEE
Q 013217           96 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST-GLVDYDMLEKTAILFRPKLI  173 (447)
Q Consensus        96 s-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~id~~~l~~~~~~~~~kli  173 (447)
                      + +++..++.+++++||+|++.+|.|.++..        .+...|.  ++++++++.++ +..+++++.+...+ ++++|
T Consensus       101 ~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~--------~~~~~g~--~v~~v~~~~~~~~~~~l~~~~~~~~~-~~~~v  169 (405)
T PRK09148        101 SKEGFANMAQAITAPGDVILCPNPSYPIHAF--------GFIMAGG--VIRSVPAEPDEEFFPALERAVRHSIP-KPIAL  169 (405)
T ss_pred             hHHHHHHHHHHhcCCCCEEEEcCCCCcccHH--------HHHhcCC--EEEEEeCCCCCCCccCHHHHHhhccc-cceEE
Confidence            7 89999999999999999999998876532        1234454  55555565332 33444444333333 78899


Q ss_pred             EEcCCCCCC--CCCh---HHHHHHHHHhCCEEEEehhhhcccccccc-CCCC--CC---cccEEEeCCCccc--CCCCCc
Q 013217          174 IAGASAYPR--DFDY---PRMRQIADAVGALLMMDMAHISGLVAASV-VADP--FK---YCDVVTTTTHKSL--RGPRGG  240 (447)
Q Consensus       174 i~~~~~~~~--~~~~---~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~~~--~~---~~Di~~~s~~K~l--~Gp~gG  240 (447)
                      +++.|+||+  ..+.   ++|.++|+++|+++++|+++. .+.+.+. .++.  ++   ...+++.|++|.+  +|.|.|
T Consensus       170 ~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~-~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G  248 (405)
T PRK09148        170 IVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYS-EIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMG  248 (405)
T ss_pred             EEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccch-hhhcCCCCCCChhhCCCccCcEEEEeccccccCCcchhee
Confidence            998888886  5554   678889999999999999963 3333221 1111  11   1236789999986  578889


Q ss_pred             eEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCC
Q 013217          241 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS  320 (447)
Q Consensus       241 ~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~  320 (447)
                      |++.++      ++.+.+.........+.+...+. ++..++... ....++..+.+.++++.+.+.|.+.|+.+..+ .
T Consensus       249 ~~v~~~------~~i~~l~~~~~~~~~~~~~~~q~-~~~~~L~~~-~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p-~  319 (405)
T PRK09148        249 FAVGNE------RLIAALTRVKSYLDYGAFTPIQV-AATAALNGP-QDCIAEMRELYKKRRDVLVESFGRAGWDIPPP-A  319 (405)
T ss_pred             eeeCCH------HHHHHHHHHHHHhccCCChHHHH-HHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHcCCccCCC-C
Confidence            999877      67777765432111222222222 223344321 12346667788888999999998888765433 3


Q ss_pred             CCeeEEecCCCC--CCCHHHHHHH-HhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          321 DNHLVLVDLRPM--GIDGARVEKI-LDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       321 ~~~~~~v~~~~~--~~~~~~~~~~-L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      ...++|++++..  ..+..++.+. +++.||.+..+...+   ...++++||++.  ..    .+++++..+.|.+++..
T Consensus       320 ~g~f~~~~l~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~---~~~~~~~Ri~~~--~~----~~~l~~al~~l~~~l~~  390 (405)
T PRK09148        320 ASMFAWAPIPEAFRHLGSLEFSKLLVEKADVAVAPGVGFG---EHGDGYVRIALV--EN----EQRIRQAARNIKRFLSS  390 (405)
T ss_pred             eeEEEEEECCCccCCCCHHHHHHHHHHhCCEEEeCchhhC---CCCCCeEEEEec--CC----HHHHHHHHHHHHHHHHH
Confidence            456678887542  1234566555 567999996542211   112468999874  23    67777777777777764


Q ss_pred             H
Q 013217          398 T  398 (447)
Q Consensus       398 ~  398 (447)
                      .
T Consensus       391 ~  391 (405)
T PRK09148        391 A  391 (405)
T ss_pred             H
Confidence            4

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=99.91  E-value=1.1e-21  Score=197.60  Aligned_cols=345  Identities=17%  Similarity=0.132  Sum_probs=211.9

Q ss_pred             cCeeEecCCCCCCHHHHHHHhhhhhc----cCCC--CCCCCcccCchhHHHHHHHHHHHHHHHHcC----CCCCccceee
Q 013217           21 KSLELIASENFTSRAVMEAVGSCLTN----KYSE--GLPGKRYYGGNEYIDELETLCQKRALAAFN----LDENKWGVNV   90 (447)
Q Consensus        21 ~~i~l~~~~n~~~~~v~~a~~~~~~~----~~~~--g~~~~~~~~g~~~~~~le~~~~~~~~~~~g----~~~~~~~~~v   90 (447)
                      ..|+|-.+||..+..+++.......+    .+..  -.....+|+.......+.+.+.+++.+.+|    ++++    +|
T Consensus        39 g~i~L~~~En~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~----~I  114 (468)
T PLN02450         39 GIIQMGLAENQLSFDLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPN----KL  114 (468)
T ss_pred             eeEEeehhHhHhhHHHHHHHHHhCchhhhcccccccchhhhhcCCCCCChHHHHHHHHHHHHHhhCCCCCcChH----He
Confidence            45899999998776555544332211    0000  000111122222234455555567776666    3454    45


Q ss_pred             ecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccc-cccceeEEEecccCC-CCCCCCHHHHHHHhhh
Q 013217           91 QPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVS-GTSIYFESMPYRLDE-STGLVDYDMLEKTAIL  167 (447)
Q Consensus        91 ~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~  167 (447)
                      .+|+|+ +++..++.++++|||.|++.+|.|+++..        .+. ..|.  ++++++++. +++.+|++++++++++
T Consensus       115 iit~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~--------~~~~~~g~--~~v~v~~~~~~~~~~~~~~le~~~~~  184 (468)
T PLN02450        115 VLTAGATSANETLMFCLAEPGDAFLLPTPYYPGFDR--------DLKWRTGV--EIVPIHCSSSNGFQITESALEEAYQQ  184 (468)
T ss_pred             EEccChHHHHHHHHHHhCCCCCEEEECCCCCCchHH--------HHhhcCCc--EEEEEecCCccCCcCCHHHHHHHHHH
Confidence            568998 88999999999999999999998876532        122 2343  666666653 4567899999988764


Q ss_pred             -----hCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhcccccccc-CCCCC-------------Ccc
Q 013217          168 -----FRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VADPF-------------KYC  223 (447)
Q Consensus       168 -----~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~~~~-------------~~~  223 (447)
                           .++|+|+++.|+||+  ..+   +++|.++|+++|+++|+|+++ ..+.+.+. ..+.+             ..-
T Consensus       185 ~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y-~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~  263 (468)
T PLN02450        185 AQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIY-SGTVFDSPGFVSVMEVLKDRKLENTDVSNR  263 (468)
T ss_pred             HHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccc-cccccCCCCcccHHHHhhhcccccCCCCCc
Confidence                 278998888888886  444   567888899999999999995 44333221 11100             012


Q ss_pred             cEEEeCCCccc--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc--ChhHHHHHHHHHH
Q 013217          224 DVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ--SPEFKVYQNKVVS  299 (447)
Q Consensus       224 Di~~~s~~K~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~--~~~~~~~~~~~~~  299 (447)
                      -+++.|++|.+  +|.|.|+++++++     .+.+.+.... ..  +..+.....+++.+++.-.  ...+++..+++.+
T Consensus       264 vi~l~S~SK~~~l~GlRiG~li~~~~-----~l~~~~~~~~-~~--~~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~  335 (468)
T PLN02450        264 VHIVYSLSKDLGLPGFRVGAIYSNDE-----MVVSAATKMS-SF--GLVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQ  335 (468)
T ss_pred             EEEEEeccccCCCCCccEEEEEECCH-----HHHHHHHHHh-hc--CCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence            37789999986  6889999999863     3444444332 11  1123333333333333210  0123556778888


Q ss_pred             HHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCC----CCC-HHHH-HHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCc
Q 013217          300 NCRALASRLVELGYKLVSGGSDNHLVLVDLRPM----GID-GARV-EKILDMASITLNKNSVPGDKSALVPGGIRIGSPA  373 (447)
Q Consensus       300 ~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~----~~~-~~~~-~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~  373 (447)
                      +++.+.+.|.+.|+++..+ ..+.++|++++..    ... ..++ .+.++++||.+.++...+   ...++++|+++..
T Consensus       336 rr~~l~~~L~~~gi~~~~~-~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~---~~~~g~~Rl~f~~  411 (468)
T PLN02450        336 RQKKLVSGLEAAGIKCLKS-NAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCH---CTEPGWFRVCFAN  411 (468)
T ss_pred             HHHHHHHHHHHcCCcccCC-CceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccC---CCCCCEEEEEecC
Confidence            8888999999888876543 3466778887531    111 1223 334567899996542211   1235689999764


Q ss_pred             cccCCCCHHHHHHHHHHHHHHHHH
Q 013217          374 MTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       374 ~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      . +    ++++++..+.|++++..
T Consensus       412 ~-~----~~~l~~~l~ri~~~l~~  430 (468)
T PLN02450        412 M-S----EETLDLAMKRLKSFVES  430 (468)
T ss_pred             C-C----HHHHHHHHHHHHHHHHh
Confidence            2 2    78888888888888764

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=99.91  E-value=4.8e-21  Score=190.55  Aligned_cols=352  Identities=16%  Similarity=0.103  Sum_probs=212.9

Q ss_pred             HHHHHHHHHHH---hhcCeeEecCCC------CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHH
Q 013217            8 VCEIITKEKER---QFKSLELIASEN------FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA   78 (447)
Q Consensus         8 ~~~~~~~e~~~---~~~~i~l~~~~n------~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~   78 (447)
                      +.+++....+.   .++.++|..++.      ..++.+++++...+......+|...   .|   ..++.+...+++.+.
T Consensus        16 ~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~---~g---~~~lr~aia~~~~~~   89 (401)
T TIGR01264        16 IRAIVDNMKVKPNPEKPMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSGKYNGYAPT---VG---ALSAREAIASYYHNP   89 (401)
T ss_pred             HHHHHHHHHhhhhcCCCeeecCCCCCCCcCCCCCCHHHHHHHHHHHhccCCCCCCCC---CC---CHHHHHHHHHHHhhc
Confidence            66666543332   245588876554      3578899998876654322233221   11   233443333333321


Q ss_pred             cC--CCCCccceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-CC
Q 013217           79 FN--LDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TG  154 (447)
Q Consensus        79 ~g--~~~~~~~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~  154 (447)
                       +  ++++    +|.+++|+ +++..++.+++++||+|++.+|.|..+..        .+...|.  ++++++++.+ ++
T Consensus        90 -~~~~~~~----~i~~t~G~~~al~~~~~~l~~~gd~v~i~~P~y~~~~~--------~~~~~g~--~v~~~~~~~~~~~  154 (401)
T TIGR01264        90 -DGPIEAD----DVVLCSGCSHAIEMCIAALANAGQNILVPRPGFPLYET--------LAESMGI--EVKLYNLLPDKSW  154 (401)
T ss_pred             -CCCCCHH----HEEECcChHHHHHHHHHHhCCCCCEEEEeCCCChhHHH--------HHHHcCC--EEEEeecCCccCC
Confidence             2  3444    34457776 89999999999999999999987754421        2334454  5555555433 56


Q ss_pred             CCCHHHHHHHhhhhCCcEEEEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC----c-cc
Q 013217          155 LVDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----Y-CD  224 (447)
Q Consensus       155 ~id~~~l~~~~~~~~~klii~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~----~-~D  224 (447)
                      .+|++++++.+++ ++++|+++.++||+  ..   ++++|.++|+++|+++++|+++ ..+.+.+....++.    . .-
T Consensus       155 ~~d~~~l~~~~~~-~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~~v  232 (401)
T TIGR01264       155 EIDLKQLESLIDE-KTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIY-GDMVFSGATFEPLASLSSTVPI  232 (401)
T ss_pred             CCCHHHHHHHhcc-CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhh-hhhccCCcccccHHHcCCCCcE
Confidence            8999999998876 78999998888886  43   4788999999999999999995 45544331111111    1 13


Q ss_pred             EEEeCCCcc--cCCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHH
Q 013217          225 VVTTTTHKS--LRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCR  302 (447)
Q Consensus       225 i~~~s~~K~--l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~  302 (447)
                      +++.|++|+  ++|.|.||+++++......++.+.+.....+. . +++.....++..++.......+++..+++.++++
T Consensus       233 i~~~SfSK~~~~~GlRiG~iv~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~  310 (401)
T TIGR01264       233 LSCGGLAKRWLVPGWRLGWIIIHDRRGILRDIRDGLVKLSQRI-L-GPCTIVQGALPSILLRTPQEYFDGTLSVLESNAM  310 (401)
T ss_pred             EEEccCcccCCCccceEEEEEecCcchhHHHHHHHHHHHhhcc-C-CCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            778999997  47888899998752100012333333322111 1 2233333334444543112334667778888888


Q ss_pred             HHHHHHHHC-CcEeeeCCCCCeeEEecCCC----CCCCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCcccc
Q 013217          303 ALASRLVEL-GYKLVSGGSDNHLVLVDLRP----MGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTT  376 (447)
Q Consensus       303 ~l~~~L~~~-g~~~~~~~~~~~~~~v~~~~----~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~  376 (447)
                      .+.+.|.+. |+.+..+ ....++|+++..    ...+..++.+.| +++||.+..+    .... .++++|+++..  .
T Consensus       311 ~l~~~L~~~~~~~~~~p-~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg----~~f~-~~~~iRis~~~--~  382 (401)
T TIGR01264       311 LCYGALAAVPGLRPVMP-SGAMYMMVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPG----SCFE-YPGFFRVVLTV--P  382 (401)
T ss_pred             HHHHHHHhCCCCcccCC-CeeeEEEEEecccccCCCCCHHHHHHHHHHhCCEEEeCc----hhcC-CCCeEEEEEcC--C
Confidence            999999885 6654333 346677888642    112455665554 6899999543    2211 24689999752  2


Q ss_pred             CCCCHHHHHHHHHHHHHHHH
Q 013217          377 RGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       377 ~g~~~~di~~l~~~i~~~l~  396 (447)
                          +++++...+.|.+.++
T Consensus       383 ----~~~l~~~l~rl~~~~~  398 (401)
T TIGR01264       383 ----VVMMEEACSRIQEFCE  398 (401)
T ss_pred             ----HHHHHHHHHHHHHHHh
Confidence                6777777777766554

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=99.90  E-value=1e-21  Score=198.74  Aligned_cols=343  Identities=14%  Similarity=0.088  Sum_probs=209.7

Q ss_pred             cCeeEecCCCCCCH-HHHHHHhhhhhc----c-CCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC----CCCCccceee
Q 013217           21 KSLELIASENFTSR-AVMEAVGSCLTN----K-YSEGLPGKRYYGGNEYIDELETLCQKRALAAFN----LDENKWGVNV   90 (447)
Q Consensus        21 ~~i~l~~~~n~~~~-~v~~a~~~~~~~----~-~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g----~~~~~~~~~v   90 (447)
                      ..|+|-.+||...- .+.+.+.+....    . -...|+....|+.......+.+.+.+++.+.+|    ++++    +|
T Consensus        47 g~i~l~~aEN~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe----~I  122 (496)
T PLN02376         47 GIIQMGLAENQLCLDLIKDWVKENPEASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPE----RV  122 (496)
T ss_pred             ceEEeecchhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCCCcHHHHHHHHHHHHHHhCCCCcCChh----hE
Confidence            35899999997632 223333322110    0 001233322333333345566666677877777    5665    34


Q ss_pred             ecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccc-cccceeEEEecccCC-CCCCCCHHHHHHHhhh
Q 013217           91 QPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVS-GTSIYFESMPYRLDE-STGLVDYDMLEKTAIL  167 (447)
Q Consensus        91 ~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~  167 (447)
                      .+|+|+ +|+..++.++++|||.|++.+|.|+++..        .+. ..|.  ++++++++. +++.+|++++++++..
T Consensus       123 vit~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~--------~~~~~~G~--~vv~v~~~~~~~~~~~~~~le~a~~~  192 (496)
T PLN02376        123 VMSGGATGANETIMFCLADPGDVFLIPSPYYAAFDR--------DLRWRTGV--EIIPVPCSSSDNFKLTVDAADWAYKK  192 (496)
T ss_pred             EEccchHHHHHHHHHHhCCCCCEEEECCCCccchHH--------HHHhhCCC--EEEEEeCCCCccCcCCHHHHHHHHHH
Confidence            458887 89999999999999999999998887632        122 2343  566666653 3568999999865421


Q ss_pred             -----hCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC-------C--c--cc--
Q 013217          168 -----FRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-------K--Y--CD--  224 (447)
Q Consensus       168 -----~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~-------~--~--~D--  224 (447)
                           .++|+|+++.|+||+  ..+   +++|.++|+++|+++|+|+++ ..+++.+....++       +  .  .+  
T Consensus       193 a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY-~~~~f~~~~~~si~~l~~~~~~~~~~~~~v  271 (496)
T PLN02376        193 AQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIY-AATVFAGGDFVSVAEVVNDVDISEVNVDLI  271 (496)
T ss_pred             HHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCc-cccccCCCCcccHHHhhccccccccCCCeE
Confidence                 368988888888886  555   567888999999999999996 4444332111110       0  0  12  


Q ss_pred             EEEeCCCccc--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhH-H----HHHHHH
Q 013217          225 VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF-K----VYQNKV  297 (447)
Q Consensus       225 i~~~s~~K~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~-~----~~~~~~  297 (447)
                      +++.|++|.|  +|.|.|++++.++     .+.+.+......+   ..+.....+++..+.   ...+ +    +..+++
T Consensus       272 ~vv~S~SK~~glpGlRvG~li~~~~-----~l~~~~~~~~~~~---~vs~~~Q~a~~~~L~---d~~~~~~~l~~~r~~l  340 (496)
T PLN02376        272 HIVYSLSKDMGLPGFRVGIVYSFND-----SVVSCARKMSSFG---LVSSQTQLMLASMLS---DDQFVDNFLMESSRRL  340 (496)
T ss_pred             EEEEeccccCCCCcceEEEEEECCH-----HHHHHHHHHhhcC---CCCHHHHHHHHHHhC---ChhHHHHHHHHHHHHH
Confidence            4578999986  6888999999653     5555443322111   122222223332332   2223 2    335666


Q ss_pred             HHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCCC------CHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEe
Q 013217          298 VSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGI------DGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIG  370 (447)
Q Consensus       298 ~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~~------~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig  370 (447)
                      .++.+.+.+.|.+.|+++..+ ....++|++++....      +..++.+.| ++.||.+.++...+   ...++++|++
T Consensus       341 ~~r~~~l~~~L~~~gi~~~~~-~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~---~~~~g~~Ri~  416 (496)
T PLN02376        341 GIRHKVFTTGIKKADIACLTS-NAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFR---CTEPGWFRIC  416 (496)
T ss_pred             HHHHHHHHHHHHHCCCcccCC-CceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccC---CCCCCEEEEE
Confidence            777788888898888876553 345778999854211      113444544 56799996543221   1135689999


Q ss_pred             cCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          371 SPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       371 ~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      +..     +.++.++...+.|.+++...
T Consensus       417 fa~-----~~~~~l~~al~rl~~~l~~~  439 (496)
T PLN02376        417 FAN-----MDDDTLHVALGRIQDFVSKN  439 (496)
T ss_pred             eeC-----CCHHHHHHHHHHHHHHHHHh
Confidence            753     23678888888888877644

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=99.90  E-value=4.5e-21  Score=190.45  Aligned_cols=333  Identities=14%  Similarity=0.102  Sum_probs=212.1

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC---CCccceeeecCC
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD---ENKWGVNVQPLS   94 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~---~~~~~~~v~~~s   94 (447)
                      +..|+|..+++.  +++.+.+++...+..  ...|+..   .|   ...+.+...+++.+.+|.+   +++   +|.+|+
T Consensus        29 ~~~i~l~~~~p~~~~~~~~~~~~~~~~~~--~~~Y~~~---~G---~~~lr~~ia~~~~~~~g~~~~~~~~---~i~it~   97 (396)
T PRK09147         29 LPPISLSIGEPKHPTPAFIKDALAANLDG--LASYPTT---AG---LPALREAIAAWLERRYGLPALDPAT---QVLPVN   97 (396)
T ss_pred             CCeEecCCCCCCCCCCHHHHHHHHHHhhh--hcCCCCC---CC---CHHHHHHHHHHHHHHhCCCcCCccc---eEEECC
Confidence            567888777774  477888888766542  1234332   11   2345445556777777843   321   455688


Q ss_pred             cH-HHHHHHHHHhcCC---CCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-CCCCCHHHHHHHhhhhC
Q 013217           95 GS-PANFEVYTAILKP---HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFR  169 (447)
Q Consensus        95 Gs-~a~~~~~~al~~p---gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~~~~~~  169 (447)
                      |+ +++..++.++++|   ||+|++.+|.|.++..        .+...|.  ++++++++++ ++.+|++++++.+.+ +
T Consensus        98 G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~--------~~~~~g~--~~~~vp~~~~~~~~~d~~~l~~~~~~-~  166 (396)
T PRK09147         98 GSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEG--------AALLAGA--EPYFLNCDPANNFAPDFDAVPAEVWA-R  166 (396)
T ss_pred             ChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHH--------HHHhcCC--EEEEeccCccccCccCHHHHHHHHhh-c
Confidence            87 8999999999999   9999999988765421        2334454  5666666643 467999999988766 8


Q ss_pred             CcEEEEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCC--C------C----cccEEEeCCCc
Q 013217          170 PKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADP--F------K----YCDVVTTTTHK  232 (447)
Q Consensus       170 ~klii~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~--~------~----~~Di~~~s~~K  232 (447)
                      +|+|+++.++||+  ..   .+++|.++|+++++++|+|+++ ..+.+.+..+.+  +      .    ..-+++.|++|
T Consensus       167 ~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK  245 (396)
T PRK09147        167 TQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECY-SEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSK  245 (396)
T ss_pred             cEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccc-cccccCCCCCCchhhhhccccCccccccEEEEecccc
Confidence            9999998889986  44   4678888899999999999996 333333211100  0      0    12288899999


Q ss_pred             c--cCCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH
Q 013217          233 S--LRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE  310 (447)
Q Consensus       233 ~--l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~  310 (447)
                      .  ++|.|.||+++++      ++.+.+......... +++.....+...++.  .....++..+.+.++++.+.+.|.+
T Consensus       246 ~~~~~GlRiG~~~~~~------~l~~~~~~~~~~~~~-~~~~~~q~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~  316 (396)
T PRK09147        246 RSNVPGLRSGFVAGDA------ALLKKFLLYRTYHGC-AMPPAVQAASIAAWN--DEAHVRENRALYREKFDAVTPILAP  316 (396)
T ss_pred             ccCCccceeeeecCCH------HHHHHHHHHhhhccc-CCCHHHHHHHHHHhc--chhHHHHHHHHHHHHHHHHHHHHHH
Confidence            5  5788999999887      677766543221111 223222333222332  1223456677778888888888876


Q ss_pred             CCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHH-hhcCeEEccCCCCCCC---CCCCCCeEEEecCccccCCCCHHHHHH
Q 013217          311 LGYKLVSGGSDNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDK---SALVPGGIRIGSPAMTTRGFSEKEFVA  386 (447)
Q Consensus       311 ~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~---~~~~~~~iRig~~~~~~~g~~~~di~~  386 (447)
                      . +.+..+ ....++|++++   .+..++.+.| +++||.+..+...+..   .....+++||++..  +    ++++++
T Consensus       317 ~-~~~~~p-~~g~f~~~~~~---~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~--~----~~~l~~  385 (396)
T PRK09147        317 V-LDVQLP-DAGFYLWAKVP---GDDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVA--P----LAECVE  385 (396)
T ss_pred             h-cCCCCC-CeeEEEEEECC---CCHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecC--C----HHHHHH
Confidence            3 443322 34677888876   2456665554 6789999654322211   11224689998652  2    677777


Q ss_pred             HHHHHHHHH
Q 013217          387 IADFIHEGV  395 (447)
Q Consensus       387 l~~~i~~~l  395 (447)
                      ..+.|.+.+
T Consensus       386 ~l~rl~~~~  394 (396)
T PRK09147        386 AAERIVDFC  394 (396)
T ss_pred             HHHHHHHHh
Confidence            777776655

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.90  E-value=5.4e-21  Score=190.32  Aligned_cols=340  Identities=14%  Similarity=0.073  Sum_probs=210.9

Q ss_pred             hhcCeeEecCCC------CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CCCccceee
Q 013217           19 QFKSLELIASEN------FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNV   90 (447)
Q Consensus        19 ~~~~i~l~~~~n------~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~~~~~v   90 (447)
                      .++.|+|..++.      .+|+.+++++...+......+|+..   .|   ...+.+...+++.+.+|.  +++    +|
T Consensus        31 ~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~---~G---~~~lr~aia~~~~~~~g~~~~~~----~I  100 (409)
T PLN00143         31 HRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSAKFNSYAPT---GG---ILPARRAIADYLSNDLPYQLSPD----DV  100 (409)
T ss_pred             CCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCC---CC---CHHHHHHHHHHHHhhcCCCCCHh----hE
Confidence            445677765554      4678888988876654222234221   11   223444444566665554  454    44


Q ss_pred             ecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhh
Q 013217           91 QPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILF  168 (447)
Q Consensus        91 ~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~  168 (447)
                      .+|+|+ +++..++.++++|||+|++.+|.|+++..        .+...|.  +++.+++++ +++.+|++++++++++ 
T Consensus       101 ~it~G~~~al~~~~~~l~~~gd~v~v~~P~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~~~~-  169 (409)
T PLN00143        101 YLTLGCKHAAEIIIKVLARPEANILLPRPGFPDVET--------YAIFHHL--EIRHFDLLPEKGWEVDLDAVEAIADE-  169 (409)
T ss_pred             EEecChHHHHHHHHHHHcCCCCEEEEcCCCCcCHHH--------HHHHcCC--EEEEEeccCCCCCcCCHHHHHHhccc-
Confidence            558887 89999999999999999999998766531        2234454  444555532 4567999999998876 


Q ss_pred             CCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC---c--ccEEEeCCCccc--CC
Q 013217          169 RPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK---Y--CDVVTTTTHKSL--RG  236 (447)
Q Consensus       169 ~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~---~--~Di~~~s~~K~l--~G  236 (447)
                      ++++++++.|+||+  ..+   +++|.++|+++|+++++|+++ ..+.+.+....++.   .  .-+++.|++|.+  +|
T Consensus       170 ~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y-~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pG  248 (409)
T PLN00143        170 NTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVY-GHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPG  248 (409)
T ss_pred             CCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccc-cccccCCCCCcchhhhcccCcEEEEccchhhcCCCc
Confidence            78888888788886  555   678888899999999999995 55554332111211   1  237889999984  78


Q ss_pred             CCCceEEeecCCcchhhH------HHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH
Q 013217          237 PRGGMIFFKKDPVLGVEL------ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE  310 (447)
Q Consensus       237 p~gG~i~~~~~~~~~~~~------~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~  310 (447)
                      .|.||++++++.    .+      .+.+.....+.. .. +.....++..++.......+++..+++.++.+.+.+.|.+
T Consensus       249 lRvG~~v~~~p~----~~~~~~~~~~~~~~~~~~~~-~~-~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~  322 (409)
T PLN00143        249 WGLGWLVTCDPS----GLLQICEIADSIKKALNPAP-FP-PTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKE  322 (409)
T ss_pred             cceEEEEeeCch----hhhhhHHHHHHHHHHHhccC-CC-CchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            889999984310    22      222322222211 11 2223333333443211124577788888888888888877


Q ss_pred             CCcEe-eeCCCCCeeEEecCCCC---CC-CHHH-HHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHH
Q 013217          311 LGYKL-VSGGSDNHLVLVDLRPM---GI-DGAR-VEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEF  384 (447)
Q Consensus       311 ~g~~~-~~~~~~~~~~~v~~~~~---~~-~~~~-~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di  384 (447)
                      .+... ...+....++|++++..   ++ +..+ +.+++.++||.+..+    .... ..+++||++.  ++    ++++
T Consensus       323 ~~~~~~~~~p~gg~f~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg----~~f~-~~~~iRi~~~--~~----~~~l  391 (409)
T PLN00143        323 IPCIMCPQKAEGAFFALVKLNLLLLEDIEDDMEFCLKLAKEESLIILPG----VTVG-LKNWLRITFA--VE----QSSL  391 (409)
T ss_pred             CCCCCCCCCCCeeEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEeCc----cccC-CCCeEEEEEc--CC----HHHH
Confidence            54322 22233467788888531   22 3434 456668899999654    3211 2468999975  23    6788


Q ss_pred             HHHHHHHHHHHHH
Q 013217          385 VAIADFIHEGVEI  397 (447)
Q Consensus       385 ~~l~~~i~~~l~~  397 (447)
                      ++..+.|.++++.
T Consensus       392 ~~al~rl~~~l~~  404 (409)
T PLN00143        392 EDGLGRLKSFCGR  404 (409)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888777653

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=99.90  E-value=2.6e-21  Score=193.00  Aligned_cols=343  Identities=15%  Similarity=0.127  Sum_probs=212.5

Q ss_pred             hhcCeeEecCCC------CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC--------CCCC
Q 013217           19 QFKSLELIASEN------FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--------LDEN   84 (447)
Q Consensus        19 ~~~~i~l~~~~n------~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g--------~~~~   84 (447)
                      .+..|+|..+..      +.++.+.+++...+......+|+..      .....+.+.+.+++.+.++        ++++
T Consensus        32 ~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~~~~~~Y~~~------~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~  105 (412)
T PTZ00433         32 PKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQECNGYPPT------VGSPEAREAVATYWRNSFVHKESLKSTIKKD  105 (412)
T ss_pred             CCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCCC------CCcHHHHHHHHHHHHhhccccccccCCCChh
Confidence            345577765543      3578889998876653212234332      2233455444455655443        4444


Q ss_pred             ccceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHH
Q 013217           85 KWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLE  162 (447)
Q Consensus        85 ~~~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~  162 (447)
                          +|.+|+|+ +++..++.++++|||+|++.+|.|..+..        .+...|.  +++.+++++ +++.+|+++++
T Consensus       106 ----~i~it~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~~~--------~~~~~g~--~~~~i~~~~~~~~~~d~~~l~  171 (412)
T PTZ00433        106 ----NVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYET--------VCKAYGI--EMRFYNCRPEKDWEADLDEIR  171 (412)
T ss_pred             ----hEEEeCChHHHHHHHHHHhcCCCCEEEEccCCcccHHH--------HHHHcCC--EEEEEecCccccCcCCHHHHH
Confidence                44558887 89999999999999999999998766532        2334454  444555543 35689999999


Q ss_pred             HHhhhhCCcEEEEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCC---C--cccEEEeCCCc
Q 013217          163 KTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K--YCDVVTTTTHK  232 (447)
Q Consensus       163 ~~~~~~~~klii~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~---~--~~Di~~~s~~K  232 (447)
                      +++++ ++++|+++.++||+  ..   ++++|.++|+++|+++++|+++ ..+.+.+....++   .  ..-+++.|++|
T Consensus       172 ~~~~~-~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK  249 (412)
T PTZ00433        172 RLVDD-RTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIY-AGMVFNGATFTSVADFDTTVPRVILGGTAK  249 (412)
T ss_pred             HHhcc-CceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccc-cccccCCCCccchhhccCCCceEEEccchh
Confidence            98877 89999998888886  33   4678899999999999999996 4555433111111   1  12377899999


Q ss_pred             cc--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH
Q 013217          233 SL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE  310 (447)
Q Consensus       233 ~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~  310 (447)
                      ++  +|.|.||+++.++.....++.+.+....... .+. +.....++..++.......+++..+++.++++.+.+.|.+
T Consensus       250 ~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~~~~-~~~-~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~  327 (412)
T PTZ00433        250 NLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLGMLV-CGP-CSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGE  327 (412)
T ss_pred             hcCCCCeeEEEEEEeCCcccHHHHHHHHHHHhhcc-CCC-ChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            76  6888899997321000013555554432211 222 3333333333443211123466677888888889999987


Q ss_pred             -CCcEeeeCCCCCeeEEecCCCC---CC-CHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHH
Q 013217          311 -LGYKLVSGGSDNHLVLVDLRPM---GI-DGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEF  384 (447)
Q Consensus       311 -~g~~~~~~~~~~~~~~v~~~~~---~~-~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di  384 (447)
                       .|+.+..+ ....++|+.+...   +. +..++.+.| +++||.+..+    .... .++++|+++..      .++++
T Consensus       328 ~~~~~~~~p-~gg~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg----~~f~-~~~~iRis~~~------~~e~l  395 (412)
T PTZ00433        328 CIGLSPTMP-RGSMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPG----EIFH-MPGFTRLTISR------PVEVL  395 (412)
T ss_pred             CCCCcccCC-CeeEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCc----cccC-CCCeEEEEecC------CHHHH
Confidence             46665433 3456677776431   11 445666665 5689999543    3211 24689999742      26788


Q ss_pred             HHHHHHHHHHHHH
Q 013217          385 VAIADFIHEGVEI  397 (447)
Q Consensus       385 ~~l~~~i~~~l~~  397 (447)
                      ++..+.|.+++..
T Consensus       396 ~~al~~l~~~~~~  408 (412)
T PTZ00433        396 REAVERIKAFCER  408 (412)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888777764

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.90  E-value=7.1e-22  Score=199.27  Aligned_cols=290  Identities=16%  Similarity=0.146  Sum_probs=192.7

Q ss_pred             HHHHHHHHcCCCCCccceeeecCCcH-HHHHHHHHHh-cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecc
Q 013217           71 CQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR  148 (447)
Q Consensus        71 ~~~~~~~~~g~~~~~~~~~v~~~sGs-~a~~~~~~al-~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  148 (447)
                      .++++++++|++.+    ++..++|+ +++.+++.++ .++||+|+++++.|+++.....    ......|  .+++.++
T Consensus       117 ~~~~la~l~g~~~~----~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~----~~~~~~G--~~~~~v~  186 (447)
T PRK00451        117 YQTMICELTGMDVA----NASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLK----TYLKGQG--IEVVEVP  186 (447)
T ss_pred             HHHHHHHHhCCCcc----eEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHH----HHHHhCC--cEEEEec
Confidence            34688999999875    44446665 7777788887 4899999999988876542110    0001134  3555666


Q ss_pred             cCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC-CCChHHHHHHHHHhCCEEEE--ehhhhccccccccCCCCCC-ccc
Q 013217          149 LDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR-DFDYPRMRQIADAVGALLMM--DMAHISGLVAASVVADPFK-YCD  224 (447)
Q Consensus       149 ~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~-~~~~~~i~~ia~~~g~~liv--D~a~~~g~~~~~~~~~~~~-~~D  224 (447)
                      +++ + .+|++++++++++ +|++|+++.+++.+ ..|+++|+++|+++|+++++  |.. +.|.+.     .+-. ++|
T Consensus       187 ~~~-~-~~d~~~l~~~i~~-~t~~v~l~~pn~tG~v~~l~~I~~~a~~~~~~~iv~~d~~-~~g~~~-----~~~~~~~D  257 (447)
T PRK00451        187 YED-G-VTDLEALEAAVDD-DTAAVVVQYPNFFGVIEDLEEIAEIAHAGGALFIVGVDPV-SLGLLK-----PPGEYGAD  257 (447)
T ss_pred             CCC-C-CCCHHHHHHhcCC-CeEEEEEECCCCCCeeCCHHHHHHHHHHCCCEEEEEcChH-HhccCC-----CcccCCCC
Confidence            664 4 8999999999987 89999998765555 77999999999999999998  643 344331     1211 589


Q ss_pred             EEEeCCCcc-----cCCCCCceEEeecCCcchhhHHHHhhhc--------------------c---CCCCCCCCcH---H
Q 013217          225 VVTTTTHKS-----LRGPRGGMIFFKKDPVLGVELESAINNA--------------------V---FPGLQGGPHN---H  273 (447)
Q Consensus       225 i~~~s~~K~-----l~Gp~gG~i~~~~~~~~~~~~~~~i~~~--------------------~---~~~~~g~p~~---~  273 (447)
                      ++++|+|||     ++||+.|++++++      ++.+.+...                    .   .....++.+.   .
T Consensus       258 ~~~~s~~k~~~~~~~~Gpg~G~l~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (447)
T PRK00451        258 IVVGEGQPLGIPLSFGGPYLGFFATRK------KLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQ  331 (447)
T ss_pred             EEEECCCcCCCCCCCCCCCchHHHhhH------HHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccH
Confidence            999999986     6788779999887      454443100                    0   0000112121   1


Q ss_pred             HH--HHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEE
Q 013217          274 TI--GGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITL  350 (447)
Q Consensus       274 ~~--aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v  350 (447)
                      .+  .+.+.+++.+...++++..+++.++++++.+.|++. |+++. ++...+.+.+++.   .+..++.+.|.++||.+
T Consensus       332 ~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~~~~~~v~~~---~~~~~~~~~L~~~gi~~  407 (447)
T PRK00451        332 ALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIGGVELF-DGPFFNEFVVRLP---KPAEEVNEALLEKGILG  407 (447)
T ss_pred             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcCCEEec-CCCeEEEEEEecC---CCHHHHHHHHHhcCCCC
Confidence            11  222234555556678888999999999999999985 67776 2221122234542   25678999999888875


Q ss_pred             ccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          351 NKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       351 ~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      .....+.  .+.....+|++++.++|    ++|++++++.|++++
T Consensus       408 ~~~~~~~--~~~~~~~~rvs~~~~~t----~e~i~~l~~~L~~~~  446 (447)
T PRK00451        408 GYDLGRY--YPELGNHLLVCVTEKRT----KEDIDALVAALGEVL  446 (447)
T ss_pred             Ccccccc--cCCcCCEEEEecCCCCC----HHHHHHHHHHHHHHh
Confidence            3211111  11123589999998888    999999999998654

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.90  E-value=2.2e-21  Score=189.80  Aligned_cols=318  Identities=14%  Similarity=0.109  Sum_probs=202.7

Q ss_pred             cCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-H
Q 013217           21 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P   97 (447)
Q Consensus        21 ~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~   97 (447)
                      ..++|..++|+  +|+.+++++...+..  ...||..      . ...+    ++.++++++++++    +|.+++|+ +
T Consensus        21 ~~i~l~~~~~~~~~p~~~~~a~~~~~~~--~~~y~~~------~-~~~l----r~~ia~~~~~~~~----~i~it~Ga~~   83 (356)
T PRK08056         21 QLLDFSANINPLGMPVSLKRAIIDNLDC--AERYPDV------E-YRHL----HQALARHHQVPAS----WILAGNGETE   83 (356)
T ss_pred             hEEEeccccCCCCCCHHHHHHHHHHHHh--cccCcCc------c-HHHH----HHHHHHHhCcChh----hEEECCCHHH
Confidence            45888889886  588999998776543  1234321      1 2233    4577788899876    34458887 7


Q ss_pred             HHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-CCCCCHHHHHHHhhhhCCcEEEEc
Q 013217           98 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAG  176 (447)
Q Consensus        98 a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~~~~~~~klii~~  176 (447)
                      ++..++.++ .+|| +++.+|.+..+.        ..+...|.  +++.++++++ ++.+| +++++.+.+ ++|+|+++
T Consensus        84 ~l~~~~~~l-~~g~-viv~~P~y~~~~--------~~~~~~g~--~~~~v~~~~~~~~~~~-~~~~~~~~~-~~k~v~l~  149 (356)
T PRK08056         84 SIFAVVSGL-KPRR-AMIVTPGFAEYR--------RALQQVGC--EIRRYSLREADGWQLT-DAILEALTP-DLDCLFLC  149 (356)
T ss_pred             HHHHHHHHh-CCCC-EEEeCCCcHHHH--------HHHHHcCC--eEEEEecccccCCCcc-HHHHHhccC-CCCEEEEe
Confidence            877777775 7786 566666554332        12334454  5555556533 34566 455555654 89999998


Q ss_pred             CCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccC-CCCCC--cccEEEeCCCccc--CCCCCceEEeec
Q 013217          177 ASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVV-ADPFK--YCDVVTTTTHKSL--RGPRGGMIFFKK  246 (447)
Q Consensus       177 ~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~~~~~--~~Di~~~s~~K~l--~Gp~gG~i~~~~  246 (447)
                      .++||+  ..+   +++|.++|+++|+++|+|+++ .++...+.. ...+.  ...+++.|+||++  +|.|.||++.++
T Consensus       150 ~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~  228 (356)
T PRK08056        150 TPNNPTGLLPERQLLQAIAERCKSLNIALILDEAF-IDFIPDETGFIPQLADNPHLWVLRSLTKFYAIPGLRLGYLVNSD  228 (356)
T ss_pred             CCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecch-hccCCcchHHHHHhccCCCEEEEEechhhccCcchhheeeecCC
Confidence            888886  556   778899999999999999985 444322210 01111  2468899999986  577889999854


Q ss_pred             CCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhH-HHHHHHHHHHHHHHHHHHHHC-CcEeeeCCCCCee
Q 013217          247 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF-KVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHL  324 (447)
Q Consensus       247 ~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~  324 (447)
                      +     ++.+.+.....+.   +.+.....+...++   ....+ ++..+++.++++.+.+.|++. |+.+..+  .+.+
T Consensus       229 ~-----~~~~~l~~~~~~~---~~~~~~~~~a~~~l---~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~--~~~~  295 (356)
T PRK08056        229 D-----AAVARMRRQQMPW---SINAFAALAGEVIL---QDRAYQQATWQWLAEEGARFYQALCALPLLTVWPG--RANY  295 (356)
T ss_pred             H-----HHHHHHHHhCCCC---chhHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCC--CCcE
Confidence            2     5656665432221   22222222222222   22333 455677888888999999874 7766543  3556


Q ss_pred             EEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          325 VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       325 ~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      +|+++..   +..++.+.|.++||.+..+...   .....++|||++.   +    +++++++.++|+++++
T Consensus       296 ~~~~~~~---~~~~~~~~l~~~gI~v~~~~~f---~~~~~~~iRis~~---~----~~~~~~l~~~l~~~~~  354 (356)
T PRK08056        296 LFLRCER---PDIDLQRALLTQRILIRSCANY---PGLDSRYYRVAIR---S----AAENERLLAALRNVLT  354 (356)
T ss_pred             EEEEcCC---ChHHHHHHHHHCCeEEEECCCC---CCCCCCEEEEEEc---C----HHHHHHHHHHHHHHHc
Confidence            7887653   3567888888899999754221   1122458999964   3    7899999999987654

>PRK08175 aminotransferase; Validated

Probab=99.90  E-value=1e-20  Score=187.76  Aligned_cols=337  Identities=15%  Similarity=0.105  Sum_probs=208.9

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCc
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSG   95 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sG   95 (447)
                      +..++|..+...  .++.+.+++.+.+.+....+|+.      .....++.+.+.+++.+.+|..  +++   ++.+|+|
T Consensus        29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~Y~~------~~G~~~lr~aia~~~~~~~g~~~~~~~---~i~~t~G   99 (395)
T PRK08175         29 EDIIDFSMGNPDGPTPPHIVEKLCEVAQRPDTHGYST------SRGIPRLRRAISRWYQDRYDVDIDPES---EAIVTIG   99 (395)
T ss_pred             CCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCcCCCCC------CCCCHHHHHHHHHHHHHHhCCCCCCCC---cEEEccC
Confidence            455676544332  35667777665543321123322      2223455555556776666654  331   3445888


Q ss_pred             H-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh--CCcE
Q 013217           96 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKL  172 (447)
Q Consensus        96 s-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~--~~kl  172 (447)
                      + +++..++.++++|||+|++.+|.|+.+..        .+...|.  +++.++++++  ..++++++++++..  ++++
T Consensus       100 ~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~--------~~~~~g~--~~~~v~~~~~--~~~~~~l~~~l~~~~~~~~~  167 (395)
T PRK08175        100 SKEGLAHLMLATLDHGDTVLVPNPSYPIHIY--------GAVIAGA--QVRSVPLVEG--VDFFNELERAIRESYPKPKM  167 (395)
T ss_pred             cHHHHHHHHHHhCCCCCEEEEcCCCCcchHH--------HHHHcCC--eEEEEecccC--CCcHHHHHHHHhhccCCceE
Confidence            8 78888888999999999999998876532        1233454  5555556533  23588888887642  6899


Q ss_pred             EEEcCCCCCC--CCCh---HHHHHHHHHhCCEEEEehhhhccccccccCCCC---CC---cccEEEeCCCccc--CCCCC
Q 013217          173 IIAGASAYPR--DFDY---PRMRQIADAVGALLMMDMAHISGLVAASVVADP---FK---YCDVVTTTTHKSL--RGPRG  239 (447)
Q Consensus       173 ii~~~~~~~~--~~~~---~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~---~~---~~Di~~~s~~K~l--~Gp~g  239 (447)
                      |+++.++||+  ..+.   ++|.++|+++|+++|+|+++. .+.+.+....+   ++   ...+++.|++|.+  +|.|.
T Consensus       168 v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~-~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRi  246 (395)
T PRK08175        168 MILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYA-DIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRI  246 (395)
T ss_pred             EEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchH-hhccCCCCCcchhcCCCcccCEEEEeeccccccCcchhh
Confidence            9988777776  5565   788999999999999999963 33433211111   11   1236789999997  57778


Q ss_pred             ceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCC
Q 013217          240 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGG  319 (447)
Q Consensus       240 G~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~  319 (447)
                      ||++.++      ++.+.+.+.......++....+.+ ...++... ....+...+.+.++++.+.+.|++.|+.+..+ 
T Consensus       247 G~~~~~~------~l~~~~~~~~~~~~~~~~~~~q~~-~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~p-  317 (395)
T PRK08175        247 GFMVGNP------ELVSALARIKSYHDYGTFTPLQVA-AIAALEGD-QQCVRDIAEQYKRRRDVLVKGLHEAGWMVEMP-  317 (395)
T ss_pred             eeeeCCH------HHHHHHHHHHhhcccCCCcHHHHH-HHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCC-
Confidence            9999877      677766553321112222322222 23344321 22345667777888899999998888765433 


Q ss_pred             CCCeeEEecCCCC--CCCHHHHHHH-HhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          320 SDNHLVLVDLRPM--GIDGARVEKI-LDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       320 ~~~~~~~v~~~~~--~~~~~~~~~~-L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      ....++|++++..  ..+..++... ++++||.+..+...+   +..+.++|+++.  ..    ++.+++..+.|.+.+.
T Consensus       318 ~~g~~i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p~~~f~---~~~~~~lRis~~--~~----~~~~~~al~~l~~~l~  388 (395)
T PRK08175        318 KASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFG---DYGDTHVRFALI--EN----RDRIRQAIRGIKAMFR  388 (395)
T ss_pred             CEEEEEEEECCcccCCCCHHHHHHHHHHhCCEEEeCchhhC---cCCCCeEEEEeC--CC----HHHHHHHHHHHHHHHH
Confidence            3466778887642  1245667654 567999996542221   122458999874  23    6777777777777665

>PRK09265 aminotransferase AlaT; Validated

Probab=99.90  E-value=1.1e-20  Score=187.99  Aligned_cols=340  Identities=14%  Similarity=0.059  Sum_probs=203.4

Q ss_pred             hcCeeEecC-CC----CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHc--CCCCCccceeeec
Q 013217           20 FKSLELIAS-EN----FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF--NLDENKWGVNVQP   92 (447)
Q Consensus        20 ~~~i~l~~~-~n----~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~--g~~~~~~~~~v~~   92 (447)
                      ++.++|..+ ++    ..++.+.+++...+..  ..+|+..   .|   ...+.+...+++....  +++++    +|.+
T Consensus        33 ~~~i~l~~g~p~~~~~~~~~~i~~~~~~~~~~--~~~Y~~~---~G---~~~lr~~ia~~~~~~~~~~~~~~----~i~~  100 (404)
T PRK09265         33 HKILKLNIGNPAPFGFEAPDEILRDVIRNLPT--AQGYSDS---KG---LFSARKAIMQYYQQKGIPDVDVD----DIYI  100 (404)
T ss_pred             CCeEEecCCCCCcCCCCCCHHHHHHHHHHhhc--CCCCCCC---CC---cHHHHHHHHHHHhccCCCCCCcc----cEEE
Confidence            456888663 32    1577888887765443  1244432   11   2234322223332211  56665    4455


Q ss_pred             CCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhhCC
Q 013217           93 LSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRP  170 (447)
Q Consensus        93 ~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~~~  170 (447)
                      ++|+ +++..++.++++|||+|++.+|.|..+..        .+...|.  +.+.++.+. +++.+|++++++++.+ ++
T Consensus       101 t~G~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~v~~~~~~~~~~~~d~~~l~~~~~~-~~  169 (404)
T PRK09265        101 GNGVSELIVMAMQALLNNGDEVLVPAPDYPLWTA--------AVSLSGG--KPVHYLCDEEAGWFPDLDDIRSKITP-RT  169 (404)
T ss_pred             eCChHHHHHHHHHHhCCCCCEEEEeCCCCcChHH--------HHHHcCC--EEEEEecccccCCCCCHHHHHHhccc-cc
Confidence            8887 77888889999999999999998875432        2223343  444444543 3567999999998876 89


Q ss_pred             cEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC----Cc-ccEEEeCCCccc--CCCC
Q 013217          171 KLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF----KY-CDVVTTTTHKSL--RGPR  238 (447)
Q Consensus       171 klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~----~~-~Di~~~s~~K~l--~Gp~  238 (447)
                      ++|++++++||+  ..+   +++|.++|+++|+++++|+++ ..+.+.+....++    +. .-+++.|++|++  +|.|
T Consensus       170 ~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlR  248 (404)
T PRK09265        170 KAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIY-DKILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFR  248 (404)
T ss_pred             eEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhh-hhccCCCCCcCCHHHcCCCceEEEEecchhhccCcccc
Confidence            998888778776  567   888999999999999999996 3444332111111    11 225678999987  5888


Q ss_pred             CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHH---HHHHHHHHHHHHHHHHHC-CcE
Q 013217          239 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY---QNKVVSNCRALASRLVEL-GYK  314 (447)
Q Consensus       239 gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~---~~~~~~~~~~l~~~L~~~-g~~  314 (447)
                      .|+++...+......+.+.+..... ...+. +.....++..++...  ..++++   .+++.++++.+.+.|++. |++
T Consensus       249 iG~~v~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~  324 (404)
T PRK09265        249 VGWMVLSGPKKHAKGYIEGLDMLAS-MRLCA-NVPAQHAIQTALGGY--QSINELILPGGRLYEQRDRAWELLNAIPGVS  324 (404)
T ss_pred             eEEEEEeCchHHHHHHHHHHHHHhc-cccCC-CcHHHHHHHHHhcCc--hhHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            8999974220000013333322111 11122 222233333344321  112222   245667778888888774 766


Q ss_pred             eeeCCCCCeeEEecCCCCC---C-CHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHH
Q 013217          315 LVSGGSDNHLVLVDLRPMG---I-DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADF  390 (447)
Q Consensus       315 ~~~~~~~~~~~~v~~~~~~---~-~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~  390 (447)
                      +..+ ..+.++|+++....   . +.+.+.+.|.++||.+..+...+   ...++++|+++.  .+    ++++++..+.
T Consensus       325 ~~~p-~~g~~l~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~F~---~~~~~~~Ri~~~--~~----~e~l~~~l~r  394 (404)
T PRK09265        325 CVKP-KGALYAFPKLDPKVYPIHDDEQFVLDLLLQEKVLLVQGTGFN---WPEPDHFRIVTL--PR----VDDLEEAIGR  394 (404)
T ss_pred             ccCC-CcceEEEEEecccccCCCCHHHHHHHHHHhCCEEEECchhhC---CCCCCeEEEEeC--CC----HHHHHHHHHH
Confidence            5443 34667787775321   1 33457788899999995432211   112468999973  33    7889999988


Q ss_pred             HHHHHHH
Q 013217          391 IHEGVEI  397 (447)
Q Consensus       391 i~~~l~~  397 (447)
                      |.++++.
T Consensus       395 l~~~l~~  401 (404)
T PRK09265        395 IGRFLSG  401 (404)
T ss_pred             HHHHHHH
Confidence            8887763

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.90  E-value=1.9e-21  Score=193.63  Aligned_cols=348  Identities=15%  Similarity=0.170  Sum_probs=215.6

Q ss_pred             HHHHHHHHHHHHHhhcCeeEecCCCCC-------CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHH
Q 013217            6 PEVCEIITKEKERQFKSLELIASENFT-------SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA   78 (447)
Q Consensus         6 ~~~~~~~~~e~~~~~~~i~l~~~~n~~-------~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~   78 (447)
                      ..|..+..++.......+.|..++..+       +..-.+++...+...+       . ..| ....++|    +.++++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~a~~~~~~~~~-------~-~~G-~~~~~fe----~~lA~~   75 (438)
T PRK15407          9 QQILELVREYAELAHAPKPFVPGKSPIPPSGKVIDAKELQNLVDASLDFW-------L-TTG-RFNDAFE----KKLAEF   75 (438)
T ss_pred             HHHHHHHHHHHHHhcccccccCCCCCCCcCccCCCHHHHHHHHHHHHhCc-------c-cCC-hhHHHHH----HHHHHH
Confidence            345566666655555556665555533       3343444444443211       0 112 2355676    578889


Q ss_pred             cCCCCCccceeeecCCcHHHHHHHHHHh---------cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEeccc
Q 013217           79 FNLDENKWGVNVQPLSGSPANFEVYTAI---------LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL  149 (447)
Q Consensus        79 ~g~~~~~~~~~v~~~sGs~a~~~~~~al---------~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  149 (447)
                      +|.+.     .+.++||++|+..++.++         ++|||+|+++++.|.+...        .+...|.  +++.+++
T Consensus        76 ~g~~~-----~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~--------~v~~~G~--~pv~vdv  140 (438)
T PRK15407         76 LGVRY-----ALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVN--------PIIQNGL--VPVFVDV  140 (438)
T ss_pred             hCCCe-----EEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHH--------HHHHcCC--EEEEEec
Confidence            99874     344688999999888876         4899999999988866532        2334443  6666667


Q ss_pred             CCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeC
Q 013217          150 DESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTT  229 (447)
Q Consensus       150 ~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s  229 (447)
                      +++++.+|++++++.+++ ++++|+++++ ++...|+++|.++|+++|++||+|++|+.|....+.....  ..|+.++|
T Consensus       141 d~~~~~id~~~le~~i~~-~tkaVi~~~~-~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~--~gd~~~fS  216 (438)
T PRK15407        141 ELPTYNIDASLLEAAVSP-KTKAIMIAHT-LGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGT--FGDIATLS  216 (438)
T ss_pred             CCCcCCcCHHHHHHHcCc-CCeEEEEeCC-CCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCeeeec--cCceEEEe
Confidence            766788999999999987 8999888742 3336799999999999999999999999998766532211  24888888


Q ss_pred             CC--cccCCCCCceEEeecCCcchhhHHHHhhhccCCCC-----------------------------------CC-CCc
Q 013217          230 TH--KSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGL-----------------------------------QG-GPH  271 (447)
Q Consensus       230 ~~--K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~-----------------------------------~g-~p~  271 (447)
                      +|  |.+.+..||+++++++     ++.+++......|.                                   .| ...
T Consensus       217 f~~~k~~~~geGG~l~t~d~-----~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~r  291 (438)
T PRK15407        217 FYPAHHITMGEGGAVFTNDP-----LLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYNLK  291 (438)
T ss_pred             CCCCCCccccCceEEEECCH-----HHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccccccC
Confidence            76  6676666899999986     55554432111110                                   01 001


Q ss_pred             HH-HHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-C-cEeee--CCC-CC-eeEEecCCC-CCCCHHHHHHHH
Q 013217          272 NH-TIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-G-YKLVS--GGS-DN-HLVLVDLRP-MGIDGARVEKIL  343 (447)
Q Consensus       272 ~~-~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g-~~~~~--~~~-~~-~~~~v~~~~-~~~~~~~~~~~L  343 (447)
                      +. ..||+  ++.++  ..+++..++.+++++.+.+.|.+. + +.+..  .+. .+ +.+.+-+.. .+.+.+++.+.|
T Consensus       292 msel~AAi--g~~qL--~~l~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~Rd~l~~~L  367 (438)
T PRK15407        292 ITDMQAAI--GLAQL--EKLPGFIEARKANFAYLKEGLASLEDFLILPEATPNSDPSWFGFPITVKEDAGFTRVELVKYL  367 (438)
T ss_pred             ccHHHHHH--HHHHH--HHHHHHHHHHHHHHHHHHHHhccCCCccccCcCCCCCeeEEEEEEEEECCcCCCCHHHHHHHH
Confidence            11 12222  23333  346777888899999999999763 3 22221  111 11 222233322 245678999999


Q ss_pred             hhcCeEEccCCC-CCCCCC-CC------CCe--------EE-EecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          344 DMASITLNKNSV-PGDKSA-LV------PGG--------IR-IGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       344 ~~~gI~v~~~~~-p~~~~~-~~------~~~--------iR-ig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      .+.||.++..+. |.+..| +.      ...        -| ++.|..  -+|+++|+++++++|+++++
T Consensus       368 ~~~GI~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l~LP~~--~~l~~~~v~~i~~~i~~~~~  435 (438)
T PRK15407        368 EENKIGTRLLFAGNLTRQPYFKGVKYRVVGELTNTDRIMNDTFWIGVY--PGLTEEMLDYVIEKIEEFFG  435 (438)
T ss_pred             HHCCCCccccCCCccccChhhhhcCCCCCCCChHHHHHHhCeEEecCC--CCCCHHHHHHHHHHHHHHHh
Confidence            999998765432 222111 00      000        01 223321  25779999999999998775

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.90  E-value=1.8e-21  Score=191.49  Aligned_cols=318  Identities=17%  Similarity=0.153  Sum_probs=210.5

Q ss_pred             cCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-H
Q 013217           21 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P   97 (447)
Q Consensus        21 ~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~   97 (447)
                      +.++|..++|+  .++.+.+++......  ...|+..      .. ..+    ++.+++++|++++    +|.+++|+ +
T Consensus        37 ~~i~l~~~~~~~~~~~~~~~al~~~~~~--~~~Y~~~------~g-~~l----r~~ia~~~~~~~~----~i~~t~G~~~   99 (371)
T PRK05166         37 RIAKLGSNENPLGPSPAVRRAFADIAEL--LRLYPDP------QG-RAL----REAIAARTGVPAD----RIILGNGSED   99 (371)
T ss_pred             ceEEcCCCCCCCCCCHHHHHHHHHHHHH--hhcCCCC------cH-HHH----HHHHHHHhCcCHH----HEEEcCCHHH
Confidence            55788888774  578888888764332  1234332      11 133    3567778898765    45568887 7


Q ss_pred             HHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcC
Q 013217           98 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA  177 (447)
Q Consensus        98 a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~  177 (447)
                      ++..++.++++|||+|++..|.|+.+..        .+...|.  ++++++.+ .++.+|++++++.+++ +|++|+++.
T Consensus       100 ~l~~~~~~~~~~gd~vli~~P~y~~~~~--------~~~~~g~--~~~~v~~~-~~~~~~~~~l~~~~~~-~~~~v~l~~  167 (371)
T PRK05166        100 LIAVICRAVLRPGDRVVTLYPSFPLHED--------YPTMMGA--RVERVTVT-PDLGFDLDALCAAVAR-APRMLMFSN  167 (371)
T ss_pred             HHHHHHHHhcCCCCEEEEcCCChHHHHH--------HHHHcCC--eEEEeecC-CCCCCCHHHHHHhhhc-CCCEEEEeC
Confidence            8888888999999999999988765421        2234454  55555565 3468999999998877 899999988


Q ss_pred             CCCCC--CCChHHHHHHHHH--hCCEEEEehhhhccccccccCCCCC---C--c-ccEEEeCCCccc--CCCCCceEEee
Q 013217          178 SAYPR--DFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPF---K--Y-CDVVTTTTHKSL--RGPRGGMIFFK  245 (447)
Q Consensus       178 ~~~~~--~~~~~~i~~ia~~--~g~~livD~a~~~g~~~~~~~~~~~---~--~-~Di~~~s~~K~l--~Gp~gG~i~~~  245 (447)
                      ++||+  ..+.+++.++++.  .++++++|+++ ..+...+..++.+   .  + ..+++.|++|.+  +|.|.||+++.
T Consensus       168 p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~  246 (371)
T PRK05166        168 PSNPVGSWLTADQLARVLDATPPETLIVVDEAY-AEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVS  246 (371)
T ss_pred             CCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcH-HHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecC
Confidence            88886  6787777777664  37899999995 3333322222211   1  1 237889999986  68888998875


Q ss_pred             cCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeE
Q 013217          246 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLV  325 (447)
Q Consensus       246 ~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~  325 (447)
                      ++     ++.+.+.....+  .+ .+.....+...++..  ...+++..+.+.++++.+.+.|++.|+.+..+  ...++
T Consensus       247 ~~-----~l~~~~~~~~~~--~~-~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~p~--~g~fl  314 (371)
T PRK05166        247 DP-----ELVGLLDRVRTP--FN-VNGAAQAAALAALDD--EEHLAKGVALALAERERLKKELAEMGYRIAPS--RANFL  314 (371)
T ss_pred             CH-----HHHHHHHHhccC--CC-CCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCcCeeCCC--cCCEE
Confidence            43     676666543322  12 233332222333331  12346667778888889999999888875432  34556


Q ss_pred             EecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          326 LVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       326 ~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      |+++..   +..++.+.|.++||.+..+    ... ...+++|+++.   +    .++++++.++|++++
T Consensus       315 ~~~~~~---~~~~l~~~l~~~gi~v~p~----~~~-~~~~~iRi~~~---~----~~~~~~l~~~l~~i~  369 (371)
T PRK05166        315 FFDARR---PASAVAEALLRQGVIVKPW----KQP-GFETFIRVSIG---S----PEENDHFVAALDKVL  369 (371)
T ss_pred             EEeCCC---CHHHHHHHHHHCCeEEecC----CCC-CCCCeEEEEcC---C----HHHHHHHHHHHHHHh
Confidence            887642   4677888888899999653    211 12568999965   2    778999999887754

>PRK06107 aspartate aminotransferase; Provisional

Probab=99.90  E-value=4e-21  Score=191.04  Aligned_cols=336  Identities=13%  Similarity=0.047  Sum_probs=214.3

Q ss_pred             hcCeeEecCCCCC--CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-
Q 013217           20 FKSLELIASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-   96 (447)
Q Consensus        20 ~~~i~l~~~~n~~--~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-   96 (447)
                      ...++|..+.+..  ++.+.+++.+.+.+. ..+|+..      ....++.+.+.+++++.+|.+.+.  .+|.+|+|+ 
T Consensus        33 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~-~~~Y~~~------~G~~~lr~~ia~~l~~~~g~~~~~--~~i~~t~G~~  103 (402)
T PRK06107         33 RSIVDLTVGEPDFDTPDHIKQAAVAAIERG-ETKYTLV------NGTPALRKAIIAKLERRNGLHYAD--NEITVGGGAK  103 (402)
T ss_pred             CCEEEcCCCCCCCCCCHHHHHHHHHHHHcC-CCCCCCC------CCCHHHHHHHHHHHHHhcCCCCCh--hhEEEeCCHH
Confidence            3457887776653  588888888877532 1223322      222345445556788888875211  245568886 


Q ss_pred             HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhhCCcEEEE
Q 013217           97 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLIIA  175 (447)
Q Consensus        97 ~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~~~klii~  175 (447)
                      +|+..++.++++|||+|++++|.|.++..        .+...+.  ..+.++++. +++.+|++++++.+.+ ++++|++
T Consensus       104 ~al~~~~~~~~~~gd~vl~~~p~y~~y~~--------~~~~~~~--~~~~v~~~~~~~~~~~~~~l~~~~~~-~~~~v~l  172 (402)
T PRK06107        104 QAIFLALMATLEAGDEVIIPAPYWVSYPD--------MVLANDG--TPVIVACPEEQGFKLTPEALEAAITP-RTRWLIL  172 (402)
T ss_pred             HHHHHHHHHhcCCCCEEEEecCCCcCHHH--------HHHHcCC--EEEEecCCcccCCCCCHHHHHhhcCc-CceEEEE
Confidence            89998888999999999999987765421        1222332  344455543 3467999999998876 8898888


Q ss_pred             cCCCCCC--CCC---hHHHHHHHHHh-CCEEEEehhhhcccccccc-CCCCC---C---cccEEEeCCCccc--CCCCCc
Q 013217          176 GASAYPR--DFD---YPRMRQIADAV-GALLMMDMAHISGLVAASV-VADPF---K---YCDVVTTTTHKSL--RGPRGG  240 (447)
Q Consensus       176 ~~~~~~~--~~~---~~~i~~ia~~~-g~~livD~a~~~g~~~~~~-~~~~~---~---~~Di~~~s~~K~l--~Gp~gG  240 (447)
                      +.++||+  ..+   +++|+++|+++ |+++|+|+++. .+.+.+. .+...   +   ..-++++|++|.+  +|.|.|
T Consensus       173 ~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~-~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG  251 (402)
T PRK06107        173 NAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYD-HIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIG  251 (402)
T ss_pred             ECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhcc-ccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCccccee
Confidence            8777776  444   57788889998 99999999863 3333221 11100   1   1247789999997  577789


Q ss_pred             eEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCC
Q 013217          241 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGG  319 (447)
Q Consensus       241 ~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~  319 (447)
                      |++.++      ++.+.+........ .+++....+++..++.. .....++..+.+.++++.+.+.|++. |+.+..+ 
T Consensus       252 ~~~~~~------~~~~~~~~~~~~~~-~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~p-  322 (402)
T PRK06107        252 YAAGPA------DLIAAINKLQSQSS-SCPSSISQAAAAAALNG-DQSFVTESVAVYKQRRDYALALLNAIPGLSCLVP-  322 (402)
T ss_pred             eeecCH------HHHHHHHHHHHhcc-cCCChHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCC-
Confidence            999887      67776665432211 22343333333434432 12234666777888888899999874 7665443 


Q ss_pred             CCCeeEEecCCC-------CCC---CHHHH-HHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHH
Q 013217          320 SDNHLVLVDLRP-------MGI---DGARV-EKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIA  388 (447)
Q Consensus       320 ~~~~~~~v~~~~-------~~~---~~~~~-~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~  388 (447)
                      ..+.++|++++.       .+.   +..++ ...+.++||.+..+    .... ..+++|+++..  +    ++++++..
T Consensus       323 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg----~~Fg-~~~~iRis~~~--~----~e~l~~~l  391 (402)
T PRK06107        323 DGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQG----TAYG-LSPYFRLSIAT--S----LETLEEAC  391 (402)
T ss_pred             CcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCc----cccC-CCCeEEEEeCC--C----HHHHHHHH
Confidence            456677877631       121   34454 45667899999643    3211 14689999762  3    78888888


Q ss_pred             HHHHHHHH
Q 013217          389 DFIHEGVE  396 (447)
Q Consensus       389 ~~i~~~l~  396 (447)
                      +.|.+.+.
T Consensus       392 ~~l~~~l~  399 (402)
T PRK06107        392 ARIERAVA  399 (402)
T ss_pred             HHHHHHHH
Confidence            88877765

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.90  E-value=5.5e-23  Score=195.54  Aligned_cols=222  Identities=18%  Similarity=0.147  Sum_probs=158.5

Q ss_pred             HHHHHHHHHcCCCCCccceeeecCCc-HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecc
Q 013217           70 LCQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR  148 (447)
Q Consensus        70 ~~~~~~~~~~g~~~~~~~~~v~~~sG-s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  148 (447)
                      .+++.++++||++..    .+. ++| +.++.+++.++++|||+|++..+.|.+++.        .+...|.....++..
T Consensus        63 ~~~~~~A~~~ga~~~----~~~-~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~--------~~~~~g~~~~~v~~~  129 (294)
T cd00615          63 EAQELAARAFGAKHT----FFL-VNGTSSSNKAVILAVCGPGDKILIDRNCHKSVIN--------GLVLSGAVPVYLKPE  129 (294)
T ss_pred             HHHHHHHHHhCCCCE----EEE-cCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHH--------HHHHCCCEEEEecCc
Confidence            344788999998752    232 455 589999999999999999999988876542        234455533333332


Q ss_pred             cCCC---CCCCCHHHHHHHhhh-hCCcEEEEcCCCCCC-CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCC--C
Q 013217          149 LDES---TGLVDYDMLEKTAIL-FRPKLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF--K  221 (447)
Q Consensus       149 ~~~~---~~~id~~~l~~~~~~-~~~klii~~~~~~~~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~--~  221 (447)
                      .+++   .+.+|++++++++++ .++++|+++.+++.+ ..|+++|.++|+++|+++++|++|+.++...+..+...  .
T Consensus       130 ~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~  209 (294)
T cd00615         130 RNPYYGIAGGIPPETFKKALIEHPDAKAAVITNPTYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMA  209 (294)
T ss_pred             cCcccCcCCCCCHHHHHHHHHhCCCceEEEEECCCCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhc
Confidence            2221   147999999999875 368898888777665 78999999999999999999999976654333222211  1


Q ss_pred             cccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHH
Q 013217          222 YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN  300 (447)
Q Consensus       222 ~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~  300 (447)
                      ++|+++.|+||+++|+++ |++.++++..    ..+++.........++|+...++++..+++.+... ..++.++..++
T Consensus       210 ~~div~~S~hK~l~g~~~~~~l~~~~~~~----~~~~~~~~~~~~~ttsps~~~~asl~~a~~~~~~~-g~~~~~~~~~~  284 (294)
T cd00615         210 GADIVVQSTHKTLPALTQGSMIHVKGDLV----NPDRVNEALNLHQSTSPSYLILASLDVARAMMALE-GKELVEELIEL  284 (294)
T ss_pred             CCcEEEEchhcccchHhHHHHHHhCCCcC----CHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHH-hHHHHHHHHHH
Confidence            589999999999999886 7777765311    12333333223345789999999999999887533 35678888899


Q ss_pred             HHHHHHHHH
Q 013217          301 CRALASRLV  309 (447)
Q Consensus       301 ~~~l~~~L~  309 (447)
                      ++.+++.|.
T Consensus       285 ~~~~r~~l~  293 (294)
T cd00615         285 ALYARQEIN  293 (294)
T ss_pred             HHHHHHHHh
Confidence            999888875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=99.90  E-value=9.4e-21  Score=187.98  Aligned_cols=331  Identities=17%  Similarity=0.134  Sum_probs=208.5

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC----CCccceeeecC
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD----ENKWGVNVQPL   93 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~----~~~~~~~v~~~   93 (447)
                      +..++|..+++.  +|+.+.+++.+.+..  ...|+..      .....+.+...+++.+.+|.+    +++   +|.+|
T Consensus        28 ~~~i~l~~~~p~~~~~~~~~~a~~~~~~~--~~~Y~~~------~G~~~lr~aia~~~~~~~~~~~~~~~~~---~i~it   96 (393)
T TIGR03538        28 KPPIALSIGEPKHPTPAFVLEALRENLHG--LSTYPTT------KGLPELRQAIARWLERRFDLPTGVDPER---HVLPV   96 (393)
T ss_pred             CCeEEecCCCCCCCCCHHHHHHHHHHhhc--cCCCCCC------CCCHHHHHHHHHHHHHhhCCcccCCCCc---eEEEC
Confidence            577888887775  478889998876542  1233332      112345444456676666643    321   45568


Q ss_pred             CcH-HHHHHHHHHhcCCCCE--EEEecCCCCcccCCCccccccccccccceeEEEecccCCC-CCCCCHHHHHHHhhhhC
Q 013217           94 SGS-PANFEVYTAILKPHDR--IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFR  169 (447)
Q Consensus        94 sGs-~a~~~~~~al~~pgd~--Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~~~~~~  169 (447)
                      +|+ +++..++.++++|||+  |++++|.|.++..        .+...|.  +++.++++++ ++.+|++++++++.+ +
T Consensus        97 ~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~~~~-~  165 (393)
T TIGR03538        97 NGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEG--------AALLAGA--EPYFLNCTAENGFLPDFDAVPESVWR-R  165 (393)
T ss_pred             CCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHH--------HHHhcCC--eEEEeeccccCCCCCCHHHHHHHHhh-c
Confidence            887 8999999999999996  8888887765421        2234454  5566666543 357899999998876 8


Q ss_pred             CcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhcccccccc--CCCC------CC----cccEEEeCCCc
Q 013217          170 PKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV--VADP------FK----YCDVVTTTTHK  232 (447)
Q Consensus       170 ~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~--~~~~------~~----~~Di~~~s~~K  232 (447)
                      +|+|+++.++||+  ..+   +++|.++|+++|+++|+|+++. .+.+.+.  ....      ..    .--+++.|++|
T Consensus       166 ~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK  244 (393)
T TIGR03538       166 CQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYS-ELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSK  244 (393)
T ss_pred             ceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchh-hcccCCCCCCcCHHHhcccccccccccEEEEecchh
Confidence            9999988888886  455   6788889999999999999963 3332211  1110      00    01278899999


Q ss_pred             c--cCCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH
Q 013217          233 S--LRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE  310 (447)
Q Consensus       233 ~--l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~  310 (447)
                      .  ++|.|.|++++++      ++.+++.........+.+...+.++ ..++..  ....++..+.+.++++.+.+.|.+
T Consensus       245 ~~~~~GlRvG~~i~~~------~l~~~~~~~~~~~~~~~~~~~q~~~-~~~l~~--~~~~~~~~~~~~~~~~~~~~~L~~  315 (393)
T TIGR03538       245 RSNLPGLRSGFVAGDA------EILKAFLRYRTYHGCAMPIPTQLAS-IAAWND--EQHVRENRALYREKFAAVLEILGQ  315 (393)
T ss_pred             hcCCcccceEEEecCH------HHHHHHHHHHHhhccCcCHHHHHHH-HHHhcC--hHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5  4788999999887      6766665433211122222222222 223321  223456667778888888888876


Q ss_pred             CCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHH-hhcCeEEccCCCCCCC---CCCCCCeEEEecCccccCCCCHHHHHH
Q 013217          311 LGYKLVSGGSDNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDK---SALVPGGIRIGSPAMTTRGFSEKEFVA  386 (447)
Q Consensus       311 ~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~---~~~~~~~iRig~~~~~~~g~~~~di~~  386 (447)
                      . +.+.. +....++|++++   .+..++.+.| +++||.+..+...+..   .+...+++||++..  +    ++++++
T Consensus       316 ~-~~~~~-p~gg~f~~~~~~---~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~--~----~~~l~~  384 (393)
T TIGR03538       316 V-LDLEL-PDAGFYLWPKVP---GDDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVA--P----LEECVE  384 (393)
T ss_pred             h-CcccC-CCeeEEEEEECC---CCHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecC--C----HHHHHH
Confidence            4 33322 244667888875   2456676665 6789999654321110   11224689999653  3    677777


Q ss_pred             HHHHHHH
Q 013217          387 IADFIHE  393 (447)
Q Consensus       387 l~~~i~~  393 (447)
                      ..+.|.+
T Consensus       385 ~l~~l~~  391 (393)
T TIGR03538       385 AAERIRS  391 (393)
T ss_pred             HHHHHHH
Confidence            7777654

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=99.90  E-value=4.5e-21  Score=191.15  Aligned_cols=343  Identities=14%  Similarity=0.127  Sum_probs=205.7

Q ss_pred             HHHHHHHHHHHH--hhcCeeEecCCCC--CCHHHHHHHhhhhhcc----CCCCCCCCcccCchhHHHHHHHHHHHHHHHH
Q 013217            7 EVCEIITKEKER--QFKSLELIASENF--TSRAVMEAVGSCLTNK----YSEGLPGKRYYGGNEYIDELETLCQKRALAA   78 (447)
Q Consensus         7 ~~~~~~~~e~~~--~~~~i~l~~~~n~--~~~~v~~a~~~~~~~~----~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~   78 (447)
                      ++.+.+....+.  .++.++|..+++.  +++.+.+++.+.+...    ...+|+      ..+....+.+...+++.+.
T Consensus        19 ~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~------~~~G~~~LR~aia~~~~~~   92 (409)
T PRK07590         19 EIARRVNAFREANPEAKIIRLGIGDVTQPLPPAVIEAMHKAVDEMGTAETFRGYG------PEQGYDFLREKIAENDYQA   92 (409)
T ss_pred             HHHHHHHHHhhhcCCCceEEecCcCCCCCCCHHHHHHHHHHHhcccccCCccCCC------CCCCCHHHHHHHHHHHHHh
Confidence            455555544333  2456888888875  4678888887766531    111332      1122234544444555555


Q ss_pred             cC--CCCCccceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccce---------eEEEe
Q 013217           79 FN--LDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY---------FESMP  146 (447)
Q Consensus        79 ~g--~~~~~~~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~---------~~~~~  146 (447)
                      .|  ++++    +|.+|+|+ +++.. +..+++|||+|++.+|.|.++..        .+...|..         .++++
T Consensus        93 ~g~~~~~~----~I~it~Ga~~al~~-l~~~~~~gd~V~v~~P~Y~~~~~--------~~~~~g~~~~~~~~~~~~~~~~  159 (409)
T PRK07590         93 RGCDISAD----EIFISDGAKCDTGN-ILDIFGPDNTIAVTDPVYPVYVD--------TNVMAGRTGEANEDGRYSGIVY  159 (409)
T ss_pred             cCCcCChh----hEEECCCHHHHHHH-HHHhcCCCCEEEEeCCCCcchHH--------HHHHcCCcccccccccccceeE
Confidence            55  4454    45569998 67665 45677999999999998876542        12233331         12556


Q ss_pred             cccCCC-CCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC
Q 013217          147 YRLDES-TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF  220 (447)
Q Consensus       147 ~~~~~~-~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~  220 (447)
                      ++++++ ++.+|.+       ..++|+|+++.|+||+  ..+   +++|.++|+++|+++|+|+++ ..+...+..+.++
T Consensus       160 v~~~~~~~~~~d~~-------~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y-~~~~~~~~~~~~~  231 (409)
T PRK07590        160 LPCTAENNFVPELP-------EEKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAY-EAFISDPSLPHSI  231 (409)
T ss_pred             eecccccCCcccCc-------ccCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccc-hhhccCCCCCcch
Confidence            666533 3444432       1389999988888886  444   567888899999999999996 3444332211112


Q ss_pred             ---Cc---ccEEEeCCCccc--CCCCCceEEeecCCcchhhHHHHh------------hhccCCCCCCCCcHHHHHHHHH
Q 013217          221 ---KY---CDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAI------------NNAVFPGLQGGPHNHTIGGLAV  280 (447)
Q Consensus       221 ---~~---~Di~~~s~~K~l--~Gp~gG~i~~~~~~~~~~~~~~~i------------~~~~~~~~~g~p~~~~~aal~~  280 (447)
                         +.   .-+++.|++|++  +|.|.|++++++      ++.+.+            ........ .+++.....++..
T Consensus       232 ~~~~~~~~~vi~~~SfSK~~~~pGlRiG~~i~~~------~li~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~q~a~~~  304 (409)
T PRK07590        232 YEIEGARECAIEFRSFSKTAGFTGTRCAYTVVPK------ELKGKTSDGEGVSLNSLWNRRQSTKF-NGVSYIVQRAAEA  304 (409)
T ss_pred             hhCCCcccceEEEecCccccCCcCceeEEEEcCH------HHhhhccccchhhhHHHHHHHHhhcc-cCcCHHHHHHHHH
Confidence               11   236789999986  688889999987      555421            11111111 1223333333333


Q ss_pred             HHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHH-hhcCeEEccCCCCCCC
Q 013217          281 CLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDK  359 (447)
Q Consensus       281 al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~  359 (447)
                      ++..-.....++..+.+.++++.+.+.|++.|+.+..+ ..++++|++++. +++..++...| +++||.+..+...+  
T Consensus       305 ~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~-~g~~f~wi~~~~-~~~~~~~~~~l~~~~gv~v~pg~~f~--  380 (409)
T PRK07590        305 VYSPEGKAQIKELIDYYMENAKIIREGLESAGFEVYGG-VNAPYIWVKTPD-GMSSWDFFDKLLQEANVVGTPGSGFG--  380 (409)
T ss_pred             HhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceecC-CcceEEEEECCC-CCCHHHHHHHHHHHCCEEEeChhHhC--
Confidence            44321112345667778888899999999888776543 346678888864 35556666554 57899986442211  


Q ss_pred             CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          360 SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       360 ~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                       ....+++||+.  ..+    ++++++..+.|.++
T Consensus       381 -~~~~~~iRi~~--~~~----~~~l~~~l~rl~~~  408 (409)
T PRK07590        381 -PSGEGYFRLSA--FGS----RENVLEAMERIKKA  408 (409)
T ss_pred             -CCCCCEEEEEc--cCC----HHHHHHHHHHHHhh
Confidence             11245899984  233    78888888877654

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.90  E-value=1.6e-21  Score=189.21  Aligned_cols=315  Identities=18%  Similarity=0.211  Sum_probs=209.4

Q ss_pred             CCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccc
Q 013217           54 GKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKR  133 (447)
Q Consensus        54 ~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~  133 (447)
                      |...|+|.+....+|    +.+++++|.++     .|.++||+.|+..++...++|||+|  +++.|....       ..
T Consensus        63 GDe~yag~~s~~~lE----~~va~~~G~~~-----av~v~sGT~Al~ll~~l~l~pGDeV--psn~~f~Tt-------~a  124 (450)
T TIGR02618        63 GDEAYAGSRNFYHLE----RTVRELYGFKY-----VVPTHQGRGAENLLSQIAIKPGDYV--PGNMYFTTT-------RY  124 (450)
T ss_pred             cchhhcCCCcHHHHH----HHHHHHHCCCe-----EEEcCCHHHHHHHHHHhCCCCcCEE--CCceeHHHH-------HH
Confidence            333467777788898    57889999986     3556899999776666678999988  333331111       01


Q ss_pred             ccccccceeEEEecccC---------CCCCCCCHHHHHHHhhhh---CCcEEEEcCCCC-C-C-C---CChHHHHHHHHH
Q 013217          134 RVSGTSIYFESMPYRLD---------ESTGLVDYDMLEKTAILF---RPKLIIAGASAY-P-R-D---FDYPRMRQIADA  195 (447)
Q Consensus       134 ~~~~~g~~~~~~~~~~~---------~~~~~id~~~l~~~~~~~---~~klii~~~~~~-~-~-~---~~~~~i~~ia~~  195 (447)
                      .+...|.  .++.+..+         +.++.+|+++|++++++.   ++++|.+..++| . + +   .+++++.++|++
T Consensus       125 hIe~~Ga--v~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~  202 (450)
T TIGR02618       125 HQEKNGA--TFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEA  202 (450)
T ss_pred             HHHhCCe--EEEeeecccccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHH
Confidence            1234443  33333222         457899999999999763   233555542332 2 3 4   467999999999


Q ss_pred             hCCEEEEehhhhccccc------cccCCCCC--------CcccEEEeCCCcccCCCCCceEEeecCCcchhhHHHHhhhc
Q 013217          196 VGALLMMDMAHISGLVA------ASVVADPF--------KYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNA  261 (447)
Q Consensus       196 ~g~~livD~a~~~g~~~------~~~~~~~~--------~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~  261 (447)
                      ||++|+.|+||..|--.      .+....++        .++|.+++|++|...+|.||+|+++++     ++.++++..
T Consensus       203 ~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~GG~l~~~d~-----~l~~k~r~~  277 (450)
T TIGR02618       203 HGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVNIGGFLCMNDD-----EMFQSAKEL  277 (450)
T ss_pred             cCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCCCceEEEeCCH-----HHHHHHHHH
Confidence            99999999999885311      12222222        379999999999999999999998886     788877665


Q ss_pred             --cCCCC--CCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCC--CC-
Q 013217          262 --VFPGL--QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPM--GI-  334 (447)
Q Consensus       262 --~~~~~--~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~--~~-  334 (447)
                        .+.|+  .|+..-..+.|++.++++....   .+.++...++++|.+.|.+.|++++.+ ...|.+++|....  .+ 
T Consensus       278 ~~~~eG~~tyGgla~r~~~ala~gL~e~~~~---~y~~~r~~~a~~La~~L~~~Gvpv~~p-~ggh~V~vda~~~lph~~  353 (450)
T TIGR02618       278 VVVFEGMPSYGGLAGRDMEAMAIGIREAVDY---EYIEHRVKQVRYLGDKLKAAGVPIVEP-VGGHAVFLDARRFLPHIP  353 (450)
T ss_pred             hhhcCCccccCchhhhhHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHCCCcccCC-CCcceEEEEhHHhCCCCC
Confidence              33443  3443445678888888886543   557777889999999999999998654 5678888886431  22 


Q ss_pred             ----CHHHHHHHH-hhcCeEEc-cCCC-----CCCCCCCCC--CeEEEecCccccCCCCHHHHHHHHHHHHHHHHHHHH
Q 013217          335 ----DGARVEKIL-DMASITLN-KNSV-----PGDKSALVP--GGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLE  400 (447)
Q Consensus       335 ----~~~~~~~~L-~~~gI~v~-~~~~-----p~~~~~~~~--~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~~  400 (447)
                          .++.+.-.| .+.||... .+++     |.......+  .-+|+..|.   |-.+.+.|+++++.+..+.++...
T Consensus       354 ~~~~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaipr---r~yt~~h~~~v~~~~~~~~~~~~~  429 (450)
T TIGR02618       354 QDQFPAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPR---RVYTYAHMDVVADGIIKLYKHRDD  429 (450)
T ss_pred             hhhChHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeecccc---ccccHhHHHHHHHHHHHHHhhHhh
Confidence                334444444 56677532 2222     111111111  358987653   445689999999999998887643

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=99.89  E-value=7e-21  Score=175.59  Aligned_cols=336  Identities=18%  Similarity=0.224  Sum_probs=240.1

Q ss_pred             cCeeEecCCCCC----CHHHHHHHhhhhhccCCCCCCCCcccCc-hhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCc
Q 013217           21 KSLELIASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG   95 (447)
Q Consensus        21 ~~i~l~~~~n~~----~~~v~~a~~~~~~~~~~~g~~~~~~~~g-~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sG   95 (447)
                      ..+..+.|..|+    .|.|++||...+. +|..|-.|.|.-.| +.+.-.+|    ..++++.+-+.+     +.++|.
T Consensus       171 k~VtVWCSNDYLgms~Hp~V~~A~~~tl~-~hG~GAGGTRNIsG~s~~hv~LE----~eLA~LHqK~aA-----LlFsSC  240 (570)
T KOG1360|consen  171 KKVTVWCSNDYLGMSRHPEVLDAMHDTLD-RHGAGAGGTRNISGHSKHHVRLE----AELADLHQKEAA-----LLFSSC  240 (570)
T ss_pred             CceEEEecCccccccCChHHHHHHHHHHH-HcCCCcCCccccCCCCchhhhHH----HHHHHHhcCcce-----eeeeee
Confidence            447778888886    5999999998886 46667777775544 45556777    578899887763     334777


Q ss_pred             HHHHHHHHHHh--cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh---CC
Q 013217           96 SPANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF---RP  170 (447)
Q Consensus        96 s~a~~~~~~al--~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~---~~  170 (447)
                      .-||.+.+..|  .-||.+|......|.+.+.        .++-++. -+.+ +.      .-|+++|+++++..   .|
T Consensus       241 fVANDstLftLak~lpgcei~SD~gNHASMI~--------GIrns~v-~K~I-Fr------HND~~hL~~lL~~~~~svP  304 (570)
T KOG1360|consen  241 FVANDSTLFTLAKKLPGCEIFSDEGNHASMIQ--------GIRNSRV-PKHI-FR------HNDLDHLEQLLQSSPKSVP  304 (570)
T ss_pred             eeccchHHHHHHHHCCCcEEeccccchHHHHH--------HhhhcCC-ccee-ec------cCCHHHHHHHHHhCCCCCC
Confidence            78888888877  4599999988766654431        1222221 1111 11      35899999988653   47


Q ss_pred             cEEEEc--CCCCCCCCChHHHHHHHHHhCCEEEEehhhhcccccc---cc--CCCCCCcccEEEeCCCcccCCCCCceEE
Q 013217          171 KLIIAG--ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA---SV--VADPFKYCDVVTTTTHKSLRGPRGGMIF  243 (447)
Q Consensus       171 klii~~--~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~---~~--~~~~~~~~Di~~~s~~K~l~Gp~gG~i~  243 (447)
                      |+|.+.  .|..+.+.|+++|++++++||++.++|++|+.|+...   |+  .+--+...||++++..|.| |--||+|.
T Consensus       305 KivAFEtVhSM~GavcpleelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKaf-GcVGGYIA  383 (570)
T KOG1360|consen  305 KIVAFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAF-GCVGGYIA  383 (570)
T ss_pred             ceEEEeeeeccCCCcCCHHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhc-ccccceeh
Confidence            888886  3333348899999999999999999999999998754   11  1112235899999999987 56689998


Q ss_pred             eecCCcchhhHHHHhhhccCCCC--CCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCC
Q 013217          244 FKKDPVLGVELESAINNAVFPGL--QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSD  321 (447)
Q Consensus       244 ~~~~~~~~~~~~~~i~~~~~~~~--~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~  321 (447)
                      ...      .+.+.++... +|+  ..+..+..+++...|.+.+..++...++++..+|.+++++.|.+.|++++.  .+
T Consensus       384 at~------~LvDmiRSyA-aGFIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~GiPVi~--~p  454 (570)
T KOG1360|consen  384 ATR------KLVDMIRSYA-AGFIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMELGIPVIP--NP  454 (570)
T ss_pred             hhh------hHHHHHHHhc-CceEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCcccC--CC
Confidence            887      6888777643 332  233344556666668887776666777888999999999999999999987  45


Q ss_pred             CeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          322 NHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       322 ~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      +|++.+.+.+..+..+....++.++||.|...-.|..  +.....+||.....+|    ++-|+.+.+.+.++.+..
T Consensus       455 SHIiPv~vgda~l~~~~sd~Li~~h~iYvQaINyPTV--~rG~E~LRiaPTP~HT----~~mm~~lv~~l~~vw~~v  525 (570)
T KOG1360|consen  455 SHIIPVRVGDAALAKQASDILISKHNIYVQAINYPTV--ARGTERLRIAPTPHHT----PQMMNILVNALLDVWNEV  525 (570)
T ss_pred             cceeeeeccCHHHHHHHHHHHHHhcCeEEEeccCCcc--cccceeeecCCCCCCC----HHHHHHHHHHHHHHHHHc
Confidence            8888777765444333344466789999987444432  3345689998877777    999999999999888764

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=99.89  E-value=1.4e-20  Score=185.45  Aligned_cols=321  Identities=14%  Similarity=0.119  Sum_probs=205.7

Q ss_pred             CeeEecCCCC--CCHHHHHHHhhhhhccC-CCCCCCCcccCchhHHHHHHHHHHHHHHHHcC----CCCCccceeeecCC
Q 013217           22 SLELIASENF--TSRAVMEAVGSCLTNKY-SEGLPGKRYYGGNEYIDELETLCQKRALAAFN----LDENKWGVNVQPLS   94 (447)
Q Consensus        22 ~i~l~~~~n~--~~~~v~~a~~~~~~~~~-~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g----~~~~~~~~~v~~~s   94 (447)
                      -+.|..++++  +|+.+++++.+.+...+ ..+||.    .|   ...+.+...+++.+.++    ++++    +|.+|+
T Consensus        30 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~----~G---~~~Lr~aia~~~~~~~~~~~~v~~~----~I~it~   98 (374)
T PRK02610         30 LDRLDTNEFPYDLPPDLKQKLAWLYQQGIESNRYPD----GG---HEALKQAIAEYVNESAAGSSQITPA----NISVGN   98 (374)
T ss_pred             eeEecCCCCCCCCCHHHHHHHHHHHhhcccccCCCC----Cc---hHHHHHHHHHHhCccccccCCCCHH----HEEEcC
Confidence            4778888885  57899999887655421 123432    12   23454333344444332    5554    455699


Q ss_pred             cH-HHHHHHHHHhcCCCC-EEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhh---hC
Q 013217           95 GS-PANFEVYTAILKPHD-RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---FR  169 (447)
Q Consensus        95 Gs-~a~~~~~~al~~pgd-~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~---~~  169 (447)
                      |+ +++..++.+++.+|| +|++.+|.|.++..        .+...|.  +++.++++++++.+|+++++++++.   .+
T Consensus        99 Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~  168 (374)
T PRK02610         99 GSDELIRSLLIATCLGGEGSILVAEPTFSMYGI--------LAQTLGI--PVVRVGRDPETFEIDLAAAQSAIEQTQNPP  168 (374)
T ss_pred             ChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHH--------HHHHcCC--EEEEecCCcccCCCCHHHHHHHHHhhcCCC
Confidence            98 788777888888886 89999988765531        2344554  5566666655678999999998874   58


Q ss_pred             CcEEEEcCCCCCC--CCChHHHHHHHHH-hCCEEEEehhhhccccccccCCCCCC-c-ccEEEeCCCccc--CCCCCceE
Q 013217          170 PKLIIAGASAYPR--DFDYPRMRQIADA-VGALLMMDMAHISGLVAASVVADPFK-Y-CDVVTTTTHKSL--RGPRGGMI  242 (447)
Q Consensus       170 ~klii~~~~~~~~--~~~~~~i~~ia~~-~g~~livD~a~~~g~~~~~~~~~~~~-~-~Di~~~s~~K~l--~Gp~gG~i  242 (447)
                      +|+|+++.|+||+  ..+.+++.++++- +|+++|+|+++. .+..... ...+. . .-+++.|++|++  +|.|.||+
T Consensus       169 ~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~-~~~~~~~-~~~~~~~~~~ivi~SfSK~~g~~GlRiG~~  246 (374)
T PRK02610        169 VRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYF-EFSQTTL-VGELAQHPNWVILRTFSKAFRLAAHRVGYA  246 (374)
T ss_pred             ceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEecccc-ccCccch-HHHHhcCCCEEEEEecchhccCcccceeee
Confidence            9999998889986  6666666555431 489999999963 3321110 01111 1 237789999987  68899999


Q ss_pred             EeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCCC
Q 013217          243 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSD  321 (447)
Q Consensus       243 ~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~  321 (447)
                      +.++      ++.+.+.....+.  +.+...+. +...+++..  ..+.+.+++..+.++.+.+.|.+. ++.+..  +.
T Consensus       247 v~~~------~l~~~l~~~~~~~--~~~~~~q~-a~~~~l~~~--~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p--~~  313 (374)
T PRK02610        247 IGHP------ELIAVLEKVRLPY--NLPSFSQL-AAQLALEHR--QELLAAIPEILQERDRLYQALQELPQLRVWP--SA  313 (374)
T ss_pred             ecCH------HHHHHHHHhcCCC--CCCHHHHH-HHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHhCCCcEeCC--Cc
Confidence            9877      6777776544322  22222222 233344321  234444455566677777888764 666543  34


Q ss_pred             CeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          322 NHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       322 ~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      ..++|+.+.. +.+..++.+.|.++||.+...          .+.+||++.   +    .+++++..+.|++++.
T Consensus       314 g~f~~~~l~~-~~~~~~~~~~l~~~gi~v~~~----------~~~lRls~~---~----~~~~~~~l~~l~~~l~  370 (374)
T PRK02610        314 ANFLYLRLSQ-DAALAALHQALKAQGTLVRHT----------GGGLRITIG---T----PEENQRTLERLQAALT  370 (374)
T ss_pred             ceEEEEeCCC-CCCHHHHHHHHHHCCEEEEeC----------CCeEEEeCC---C----HHHHHHHHHHHHHHHh
Confidence            5667888753 456788888899999998531          357999864   2    5678888888877765

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.89  E-value=1e-22  Score=196.95  Aligned_cols=267  Identities=19%  Similarity=0.264  Sum_probs=179.1

Q ss_pred             HHHHHHHHHcCCCCCccceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecc
Q 013217           70 LCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR  148 (447)
Q Consensus        70 ~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  148 (447)
                      .+++.++++||++...+     .++|| .+|.++++++++|||+|++....|-+.+.        .+.++|.....++-.
T Consensus        70 eAe~~aA~~fGAd~t~f-----lvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~~--------alil~ga~Pvyi~p~  136 (417)
T PF01276_consen   70 EAEELAARAFGADKTFF-----LVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVYN--------ALILSGAIPVYIPPE  136 (417)
T ss_dssp             HHHHHHHHHHTESEEEE-----ESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHHH--------HHHHHTEEEEEEEEE
T ss_pred             HHHHHHHHhcCCCeEEE-----EecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHHH--------HHHHcCCeEEEecCC
Confidence            34578999999997532     37887 89999999999999999999877766542        345666543333322


Q ss_pred             cCCCC---CCCCH-----HHHHHHhhhhC----CcEEEEcCCCCCC-CCChHHHHHHHHHhCCEEEEehhhhcccccccc
Q 013217          149 LDEST---GLVDY-----DMLEKTAILFR----PKLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASV  215 (447)
Q Consensus       149 ~~~~~---~~id~-----~~l~~~~~~~~----~klii~~~~~~~~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~  215 (447)
                       +++.   +.+++     +.|+++++++.    +++|+++.|+|-+ +.|+++|.++|+++|.+|+||+||++.+.+.++
T Consensus       137 -~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~l  215 (417)
T PF01276_consen  137 -DNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTYYGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPL  215 (417)
T ss_dssp             -E-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-TTSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGG
T ss_pred             -ccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCCCeEEECHHHHHHHhcccCCEEEEEccccccccCCCC
Confidence             2222   24666     99999998732    3448888888877 789999999999999999999999877665544


Q ss_pred             CCCCCC-ccc-------EEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc
Q 013217          216 VADPFK-YCD-------VVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ  286 (447)
Q Consensus       216 ~~~~~~-~~D-------i~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~  286 (447)
                      ..+.+. ++|       +++.|+||++++... ++|.++.+..   --.++++.......+++|++..+|++..|.+++.
T Consensus       216 p~~a~~~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~---v~~~~~~~~l~~~~TTSPSY~lmASlD~a~~~m~  292 (417)
T PF01276_consen  216 PRSALALGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRI---VDHERVNEALSMHQTTSPSYPLMASLDVARAQME  292 (417)
T ss_dssp             GTTCSSTTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCC---TTHHHHHHHHHHHS-SS--HHHHHHHHHHHHHHS
T ss_pred             ccchhhccCccccccceeeeechhhcccccccceEEEecCCCc---ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh
Confidence            334343 688       999999999999877 8888888520   0234455443333457899999999999999884


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHH----CCcEeeeCC----C------------------------CCeeEEecC-----
Q 013217          287 SPEFKVYQNKVVSNCRALASRLVE----LGYKLVSGG----S------------------------DNHLVLVDL-----  329 (447)
Q Consensus       287 ~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~----~------------------------~~~~~~v~~-----  329 (447)
                      ....++++++..++++.++++|++    .+++++.+.    .                        |.--+.+.+     
T Consensus       293 ~~~G~~l~~~~i~~a~~~R~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~whgf~~~~~~~~~lDP~K~ti~~pG~~~  372 (417)
T PF01276_consen  293 EEEGRELLEEAIELAEEFRKKINRLNDIWGFKVLGPEDVGGEGCWDLDPGENWHGFEGLADDYYMLDPTKLTINTPGIDA  372 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCT-SSEESS-SEECTCCGCB--TT-TTT--TT--TTSEEE-TTEEEEE-STBET
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhcCCCceEecCCccccCCccccccCccccchhchhcccCccccCCcEEEEEccCcCc
Confidence            445678889999999999999943    355555321    0                        000123333     


Q ss_pred             ----CCCCCCHHHHHHHHhhcCeEEccC
Q 013217          330 ----RPMGIDGARVEKILDMASITLNKN  353 (447)
Q Consensus       330 ----~~~~~~~~~~~~~L~~~gI~v~~~  353 (447)
                          ...|+++..+.++|+++||.+.+.
T Consensus       373 ~g~~~~~Gi~g~~~~~~L~~~~I~~Ek~  400 (417)
T PF01276_consen  373 DGELSELGIPGYIVEKYLREHGIQVEKT  400 (417)
T ss_dssp             TSSB-SS---HHHHHHHHHHTTEE-SEE
T ss_pred             CCcccccCCCHHHHHHHHHHcCCEEEec
Confidence                456788999999999999999763

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.89  E-value=5.1e-20  Score=182.64  Aligned_cols=330  Identities=19%  Similarity=0.142  Sum_probs=205.7

Q ss_pred             CeeEecCCC--CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CCCccceeeecCCcH-
Q 013217           22 SLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSGS-   96 (447)
Q Consensus        22 ~i~l~~~~n--~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~~~~~v~~~sGs-   96 (447)
                      .++|..+..  ..++.+.+++...+..... .  ..+ |+.......+.+.+.+++.+.++.  +++    +|.+++|+ 
T Consensus        35 ~~~l~~g~p~~~~~~~v~~a~~~~~~~~~~-~--~~~-y~~~~g~~~lr~~ia~~l~~~~~~~~~~~----~i~~t~G~~  106 (394)
T PRK06836         35 VFDFSLGNPSVPPPAAVKEALRELAEEEDP-G--LHG-YMPNAGYPEVREAIAESLNRRFGTPLTAD----HIVMTCGAA  106 (394)
T ss_pred             eEEecCcCCCCCCCHHHHHHHHHHHhcCCc-C--ccc-CCCCCCCHHHHHHHHHHHHHHhCCCCCcC----cEEEeCChH
Confidence            367654443  2467888988776643210 0  011 222222344544444555554443  454    34457776 


Q ss_pred             HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 013217           97 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG  176 (447)
Q Consensus        97 ~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~  176 (447)
                      +++..++.++++|||.|++.+|.+.++..        .+...|.  +++.++.+++++.+|++++++++++ ++++|+++
T Consensus       107 ~al~~~~~~l~~~gd~Vli~~p~~~~~~~--------~~~~~g~--~v~~v~~~~~~~~~d~~~l~~~~~~-~~~~v~~~  175 (394)
T PRK06836        107 GALNVALKAILNPGDEVIVFAPYFVEYRF--------YVDNHGG--KLVVVPTDTDTFQPDLDALEAAITP-KTKAVIIN  175 (394)
T ss_pred             HHHHHHHHHhcCCCCEEEEcCCCCccHHH--------HHHHcCC--EEEEEecCCccCcCCHHHHHhhcCc-CceEEEEe
Confidence            88888999999999999999987766431        2233444  5666667655578999999999976 89999988


Q ss_pred             CCCCCC--CCC---hHHHHHHHHH------hCCEEEEehhhhccccccccC-CCCCC--cccEEEeCCCccc--CCCCCc
Q 013217          177 ASAYPR--DFD---YPRMRQIADA------VGALLMMDMAHISGLVAASVV-ADPFK--YCDVVTTTTHKSL--RGPRGG  240 (447)
Q Consensus       177 ~~~~~~--~~~---~~~i~~ia~~------~g~~livD~a~~~g~~~~~~~-~~~~~--~~Di~~~s~~K~l--~Gp~gG  240 (447)
                      +++||+  ..+   +++|.++|++      ||+++++|+++ ..+...+.. +....  ...++++|++|.+  +|.|.|
T Consensus       176 ~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pGlRiG  254 (394)
T PRK06836        176 SPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPY-REIVYDGAEVPYIFKYYDNSIVVYSFSKSLSLPGERIG  254 (394)
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccc-cccccCCCCCCChHHccCcEEEEecchhhccCcceeeE
Confidence            788876  445   5677788998      89999999985 444433211 11111  2358889999987  467789


Q ss_pred             eEEeecCCcchhhHHH------HhhhccC-CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCc
Q 013217          241 MIFFKKDPVLGVELES------AINNAVF-PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGY  313 (447)
Q Consensus       241 ~i~~~~~~~~~~~~~~------~i~~~~~-~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  313 (447)
                      ++++++      +..+      .+..... .+..+.+.. ...++...+.    ...  ..+.+.++++.+.+.|++.|+
T Consensus       255 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~q~~~~~~l~----~~~--~~~~~~~~r~~l~~~L~~~g~  321 (394)
T PRK06836        255 YIAVNP------EMEDADDLVAALVFANRILGFVNAPAL-MQRVVAKCLD----ATV--DVSIYKRNRDLLYDGLTELGF  321 (394)
T ss_pred             EEecCH------HHhhhHHHHHHHHHHhhccccccCCHH-HHHHHHHHhC----ChH--HHHHHHHHHHHHHHHHHhCCC
Confidence            999876      3321      1111100 111112222 2222222221    221  245567778888888988888


Q ss_pred             EeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217          314 KLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       314 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~  393 (447)
                      .+..+ ..++++|+.+..  .+..++.+.|.++||.+..+...+     .++++||++.  .+    ++++++..+.|++
T Consensus       322 ~~~~~-~gg~~~~~~~~~--~~~~~~~~~l~~~gv~v~~g~~f~-----~~~~iRi~~~--~~----~~~~~~~i~~l~~  387 (394)
T PRK06836        322 ECVKP-QGAFYLFPKSPE--EDDVAFCEKAKKHNLLLVPGSGFG-----CPGYFRLSYC--VD----TETIERSLPAFEK  387 (394)
T ss_pred             EeecC-CceEEEEEeCCC--CCHHHHHHHHHhCCEEEECchhcC-----CCCeEEEEec--CC----HHHHHHHHHHHHH
Confidence            76543 345666776643  366778888889999996532111     2468999975  23    8899998888888


Q ss_pred             HHHHH
Q 013217          394 GVEIT  398 (447)
Q Consensus       394 ~l~~~  398 (447)
                      +++.+
T Consensus       388 ~l~~~  392 (394)
T PRK06836        388 LAKEY  392 (394)
T ss_pred             HHHHh
Confidence            88754

>PLN02231 alanine transaminase

Probab=99.89  E-value=1.3e-20  Score=191.72  Aligned_cols=341  Identities=15%  Similarity=0.113  Sum_probs=208.8

Q ss_pred             cCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCcH-H
Q 013217           21 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGS-P   97 (447)
Q Consensus        21 ~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sGs-~   97 (447)
                      .-|++-++....|..+++.....+.+.... ..  ..|+.......+.+.+.+++.+..|.+  ++    +|.+|+|+ +
T Consensus       130 ~~i~~~~~~~~fp~~~i~~a~~~l~~~~~~-~~--~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe----~I~iT~Ga~~  202 (534)
T PLN02231        130 SLLDKSETHGLFSADAIERAWQILDQIPGR-AT--GAYSHSQGIKGLRDAIAAGIEARDGFPADPN----DIFLTDGASP  202 (534)
T ss_pred             ccCCCCCccccCCHHHHHHHHHHHHhcCCc-cc--cCcCCCCCcHHHHHHHHHHHHhccCCCCCcc----cEEEeCCHHH
Confidence            346665566667777777766666542110 00  113333334566666667777766754  43    45568887 8


Q ss_pred             HHHHHHHHhc-CCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-CCCCCHHHHHHHhhhh-----CC
Q 013217           98 ANFEVYTAIL-KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILF-----RP  170 (447)
Q Consensus        98 a~~~~~~al~-~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~~~~~-----~~  170 (447)
                      |+..++.+++ .+||.|++..|.|+.+..        .+...|.  ++++++++++ ++.+|+++|++.+++.     ++
T Consensus       203 ai~~~~~~l~~~~gd~Vli~~P~Y~~y~~--------~~~~~g~--~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~  272 (534)
T PLN02231        203 AVHMMMQLLIRSEKDGILCPIPQYPLYSA--------SIALHGG--TLVPYYLDEATGWGLEISELKKQLEDARSKGITV  272 (534)
T ss_pred             HHHHHHHHhccCCCCEEEEeCCCChhHHH--------HHHHcCC--EEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCe
Confidence            9999999998 489999999998876532        2344554  5667767643 4789999999988652     68


Q ss_pred             cEEEEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhcccccc-ccCCCCC---------Ccc---cEEEeCCCc
Q 013217          171 KLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAA-SVVADPF---------KYC---DVVTTTTHK  232 (447)
Q Consensus       171 klii~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~-~~~~~~~---------~~~---Di~~~s~~K  232 (447)
                      |+|++..|+||+  ..   .+++|.++|+++|+++|+|+++ ..+++. +....++         ..-   -+++.|++|
T Consensus       273 k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY-~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK  351 (534)
T PLN02231        273 RALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVY-QENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSK  351 (534)
T ss_pred             EEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccc-hhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCc
Confidence            888888788886  44   4678899999999999999995 454542 1111111         001   256789999


Q ss_pred             cc---CCCCCceEEee--cCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHh--cChhHH-------HHHHHHH
Q 013217          233 SL---RGPRGGMIFFK--KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHA--QSPEFK-------VYQNKVV  298 (447)
Q Consensus       233 ~l---~Gp~gG~i~~~--~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~--~~~~~~-------~~~~~~~  298 (447)
                      .+   +|.|+||+.+.  ++     ++.+.+.+.... ..+++...+++ ...+++.-  ....|+       +..+.+.
T Consensus       352 ~~~g~pGlRiGy~~~~~~~~-----~l~~~l~k~~~~-~~~s~~~~Q~~-~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~  424 (534)
T PLN02231        352 GYYGECGKRGGYMEVTGFTS-----DVREQIYKVASV-NLCSNISGQIL-ASLVMSPPKPGDESYESYMAEKDGILSSLA  424 (534)
T ss_pred             ccccCCccceEEEEEecCCH-----HHHHHHHHHHhh-hcCCChHHHHH-HHHHhCCCCCCcchHHHHHHHHHHHHHHHH
Confidence            64   59999999863  22     566666543222 12232333322 22233210  011222       2356788


Q ss_pred             HHHHHHHHHHHHC-CcEeeeCCCCCeeEEecCCC--CCC---------CHHHH-HHHHhhcCeEEccCCCCCCCC-C-CC
Q 013217          299 SNCRALASRLVEL-GYKLVSGGSDNHLVLVDLRP--MGI---------DGARV-EKILDMASITLNKNSVPGDKS-A-LV  363 (447)
Q Consensus       299 ~~~~~l~~~L~~~-g~~~~~~~~~~~~~~v~~~~--~~~---------~~~~~-~~~L~~~gI~v~~~~~p~~~~-~-~~  363 (447)
                      ++++.+.+.|++. |+.+..+ ..++++|.++..  ..+         +...+ ..+|++.||.+.    ||... . ..
T Consensus       425 ~r~~~l~~~L~~~~gi~~~~p-~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vv----PGs~Fg~~~g  499 (534)
T PLN02231        425 RRAKTLEDALNSLEGVTCNKA-EGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVV----PGSGFGQVPG  499 (534)
T ss_pred             HHHHHHHHHHhcCCCceecCC-CeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEe----CCcccCCCCC
Confidence            8888999999885 7877543 456777755531  111         12223 446678899995    44431 1 12


Q ss_pred             CCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          364 PGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       364 ~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      ...+|+++  .++    +++++..++.|.+.++.
T Consensus       500 ~~~~Rit~--~~~----~e~l~eal~RL~~~~~~  527 (534)
T PLN02231        500 TWHFRCTI--LPQ----EDKIPAIVSRLTEFHKS  527 (534)
T ss_pred             CCeEEEEe--CCC----HHHHHHHHHHHHHHHHH
Confidence            33699986  344    77877777777766654

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.89  E-value=2e-20  Score=182.56  Aligned_cols=297  Identities=20%  Similarity=0.176  Sum_probs=195.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCC--CCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccc
Q 013217           63 YIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI  140 (447)
Q Consensus        63 ~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~  140 (447)
                      ...++++..++.+...++..  .++   .+..++|++++..++.++.++||+|+++++.|.++..        .+...|.
T Consensus        37 ~~~~l~~~l~~~l~~~~~~~~~~~~---~~~~~~~t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~--------~~~~~~~  105 (350)
T cd00609          37 GLPELREAIAEWLGRRGGVDVPPEE---IVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEA--------AARLAGA  105 (350)
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCcce---EEEecCcHHHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHCCC
Confidence            34567665556666665532  221   2334555699999999999999999999988776532        2334443


Q ss_pred             eeEEEecccCCCCCCCCH--HHHHHHhhhhCCcEEEEcCCCCCC--CCChH---HHHHHHHHhCCEEEEehhhhcccccc
Q 013217          141 YFESMPYRLDESTGLVDY--DMLEKTAILFRPKLIIAGASAYPR--DFDYP---RMRQIADAVGALLMMDMAHISGLVAA  213 (447)
Q Consensus       141 ~~~~~~~~~~~~~~~id~--~~l~~~~~~~~~klii~~~~~~~~--~~~~~---~i~~ia~~~g~~livD~a~~~g~~~~  213 (447)
                        +++.++.+. .+..+.  +.++....+ ++++|+++.+++++  ..|.+   +|.++|+++|+++++|++|+.+.. .
T Consensus       106 --~~~~i~~~~-~~~~~~~~~~~~~~~~~-~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~-~  180 (350)
T cd00609         106 --EVVPVPLDE-EGGFLLDLELLEAAKTP-KTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVY-D  180 (350)
T ss_pred             --EEEEEeccc-ccCCccCHHHHHhhcCc-cceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhcee-C
Confidence              445555553 334443  666666555 89999998766654  56654   555899999999999999865432 2


Q ss_pred             ccCC----CC-CCcccEEEeCCCcccC--CCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc
Q 013217          214 SVVA----DP-FKYCDVVTTTTHKSLR--GPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ  286 (447)
Q Consensus       214 ~~~~----~~-~~~~Di~~~s~~K~l~--Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~  286 (447)
                      +...    .. ..+.|++++|+||+++  |++.|+++++++     ++.+.+...... ..++++.....++..+++...
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~  254 (350)
T cd00609         181 GEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPE-----ELLERLKKLLPY-TTSGPSTLSQAAAAAALDDGE  254 (350)
T ss_pred             CcccccccCcCccCcEEEEeecccccCCcccceEEEecCHH-----HHHHHHHHHHHh-cccCCChHHHHHHHHHHhCcH
Confidence            2211    11 1147899999999985  556699999874     466666543322 234556666666666666543


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCe
Q 013217          287 SPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGG  366 (447)
Q Consensus       287 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~  366 (447)
                       .++++..+++.++++++.+.|.+.+...........++++.+... .+.+.+.+.|.++||.+.....+.   +..+.+
T Consensus       255 -~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~l~~~gi~i~~~~~~~---~~~~~~  329 (350)
T cd00609         255 -EHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEG-DDEEFLERLLLEAGVVVRPGSAFG---EGGEGF  329 (350)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCccEEEEEecCCC-ChHHHHHHHHHhCCEEEecccccc---cCCCCe
Confidence             456778888999999999999986654322223345566665432 345678888999999996542221   123568


Q ss_pred             EEEecCccccCCCCHHHHHHHHHHHH
Q 013217          367 IRIGSPAMTTRGFSEKEFVAIADFIH  392 (447)
Q Consensus       367 iRig~~~~~~~g~~~~di~~l~~~i~  392 (447)
                      +|++++..      .+|+++++++|+
T Consensus       330 iRi~~~~~------~~~i~~~~~al~  349 (350)
T cd00609         330 VRLSFATP------EEELEEALERLA  349 (350)
T ss_pred             EEEEeeCC------HHHHHHHHHHhh
Confidence            99997654      689999998875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.89  E-value=6.6e-21  Score=187.50  Aligned_cols=318  Identities=13%  Similarity=0.089  Sum_probs=200.6

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh-cCCC
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPH  110 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al-~~pg  110 (447)
                      +++.-++++...+.+.+.        ++..+..+.+|    +++++++|.+.     .+.++||++|+..++.++ ++||
T Consensus         9 ~~~~~~~~~~~~l~~~~~--------~g~~~~~~~~e----~~la~~~g~~~-----~v~~~sgt~al~~~l~~~~~~~G   71 (375)
T PRK11706          9 VVGTELDYIQQAMSSGKL--------CGDGGFTRRCQ----QWLEQRFGSAK-----VLLTPSCTAALEMAALLLDIQPG   71 (375)
T ss_pred             CCHHHHHHHHHHHHcCCc--------cCCCHHHHHHH----HHHHHHhCCCe-----EEEECCHHHHHHHHHHHhCCCCC
Confidence            445556666666655321        22234456666    57888889864     244567778988777766 7999


Q ss_pred             CEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCCCCChHHHH
Q 013217          111 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMR  190 (447)
Q Consensus       111 d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~~~~~~~i~  190 (447)
                      |+|+++++.|.+...        .+...|.  +++.++++++++.+|++++++++++ +||+|++++ .++...|+++|.
T Consensus        72 d~Viv~~~t~~~~~~--------~~~~~G~--~~v~~d~d~~~~~~d~~~le~~i~~-~tk~i~~~~-~~G~~~~~~~i~  139 (375)
T PRK11706         72 DEVIMPSYTFVSTAN--------AFVLRGA--KIVFVDIRPDTMNIDETLIEAAITP-KTRAIVPVH-YAGVACEMDTIM  139 (375)
T ss_pred             CEEEECCCCcHHHHH--------HHHHcCC--EEEEEecCCCcCCcCHHHHHHhcCC-CCeEEEEeC-CCCCccCHHHHH
Confidence            999999988776532        2334554  6667778767778999999999987 899988764 234478999999


Q ss_pred             HHHHHhCCEEEEehhhhccccccccCCCCCC-cccEEEeCCC--cccCCCCCceEEeecCCcchhhHHHHhhhccCCC--
Q 013217          191 QIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESAINNAVFPG--  265 (447)
Q Consensus       191 ~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-~~Di~~~s~~--K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~--  265 (447)
                      ++|+++|+++|+|++|+.|....+.   ++. ..|+.++|+|  |++..+.||+++++++     ++.+++......+  
T Consensus       140 ~la~~~~i~vIeD~a~a~g~~~~~~---~~g~~~~~~~~Sf~~~K~l~~g~gG~~~~~~~-----~~~~~~~~~~~~g~~  211 (375)
T PRK11706        140 ALAKKHNLFVVEDAAQGVMSTYKGR---ALGTIGHIGCFSFHETKNYTAGEGGALLINDP-----ALIERAEIIREKGTN  211 (375)
T ss_pred             HHHHHcCCEEEEECccccccccCCe---eeecCcCEEEEeCCCCccccccCCeEEEECCH-----HHHHHHHHHHHcCCC
Confidence            9999999999999999888643321   222 3588888888  9986666677777654     5665443322111  


Q ss_pred             ---------------CCCC-CcH-HHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC---C-cEeee--CC--C
Q 013217          266 ---------------LQGG-PHN-HTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL---G-YKLVS--GG--S  320 (447)
Q Consensus       266 ---------------~~g~-p~~-~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---g-~~~~~--~~--~  320 (447)
                                     ..|. ..+ ...+++  ++.++  ..+++..++..++++.+.+.|.+.   | +.+..  ++  .
T Consensus       212 ~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~--~~~ql--~~l~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~  287 (375)
T PRK11706        212 RSQFFRGQVDKYTWVDIGSSYLPSELQAAY--LWAQL--EAADRINQRRLALWQRYYDALAPLAEAGRIELPSIPDDCKH  287 (375)
T ss_pred             cchhhccCCCcceeeecccccCcCHHHHHH--HHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCCce
Confidence                           0111 111 222322  22222  235666777788888888888763   2 33221  11  1


Q ss_pred             CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCC-C----------------CCeEEEecCccccCCCCHHH
Q 013217          321 DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSAL-V----------------PGGIRIGSPAMTTRGFSEKE  383 (447)
Q Consensus       321 ~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~-~----------------~~~iRig~~~~~~~g~~~~d  383 (447)
                      ..+++++.+.. +.+..++.+.|.++||.++..+.|.+..+. .                ...+.  +|..  -.++++|
T Consensus       288 ~~~~~~~~~~~-~~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~--lP~~--~~l~~~~  362 (375)
T PRK11706        288 NAHMFYIKLRD-LEDRSALINFLKEAGIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESERLLR--LPLF--YNLTDVE  362 (375)
T ss_pred             eeEEEEEEECC-cCCHHHHHHHHHHCCCCccccCCccCcchhhHhcCCCCCCChHHHHHHhCcEe--ccCC--CCCCHHH
Confidence            23344554432 346789999999999998765444332110 0                01122  2211  2567999


Q ss_pred             HHHHHHHHHHHH
Q 013217          384 FVAIADFIHEGV  395 (447)
Q Consensus       384 i~~l~~~i~~~l  395 (447)
                      ++++++.|++.+
T Consensus       363 ~~~i~~~i~~~~  374 (375)
T PRK11706        363 QRTVIDTILEFF  374 (375)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998754

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.89  E-value=6.8e-20  Score=182.23  Aligned_cols=335  Identities=17%  Similarity=0.160  Sum_probs=204.9

Q ss_pred             cCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHc--CCCCCccceeeecCCcH
Q 013217           21 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF--NLDENKWGVNVQPLSGS   96 (447)
Q Consensus        21 ~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~--g~~~~~~~~~v~~~sGs   96 (447)
                      +.+.|..+++.  .++.+.+++......  ..+|+..      ....++.+...+++. ..  +++++    +|.+++|+
T Consensus        31 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~--~~~Y~~~------~g~~~lr~~ia~~~~-~~~~~~~~~----~i~~t~G~   97 (397)
T PRK07568         31 KVYHLNIGQPDIKTPEVFFEAIKNYDEE--VLAYSHS------QGIPELREAFAKYYK-KWGIDVEPD----EILITNGG   97 (397)
T ss_pred             CEEEecCCCCCCCCCHHHHHHHHHHhcC--CcCcCCC------CCCHHHHHHHHHHHH-HhCCCCCcc----eEEEcCCh
Confidence            35777766663  578888888764322  1233321      112334333333333 12  34454    34457765


Q ss_pred             -HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCC-C-CCHHHHHHHhhhhCCcEE
Q 013217           97 -PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG-L-VDYDMLEKTAILFRPKLI  173 (447)
Q Consensus        97 -~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~-id~~~l~~~~~~~~~kli  173 (447)
                       +++..++.++++|||+|++.+|.|..+..        .....|.  ++++++++.+++ . .|++++++++++ ++++|
T Consensus        98 ~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~g~~~~~~~~l~~~~~~-~~~~v  166 (397)
T PRK07568         98 SEAILFAMMAICDPGDEILVPEPFYANYNG--------FATSAGV--KIVPVTTKIEEGFHLPSKEEIEKLITP-KTKAI  166 (397)
T ss_pred             HHHHHHHHHHhcCCCCEEEEecCCCccHHH--------HHHHcCC--EEEEeecCcccCCCCCCHHHHHHhcCc-cceEE
Confidence             88888888899999999999987654321        1233454  455555543333 3 468999998876 89999


Q ss_pred             EEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhcccccccc-CCCCC--Cc---ccEEEeCCCccc--CCCCCc
Q 013217          174 IAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASV-VADPF--KY---CDVVTTTTHKSL--RGPRGG  240 (447)
Q Consensus       174 i~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~~~~--~~---~Di~~~s~~K~l--~Gp~gG  240 (447)
                      +++.++||+  ..   ++++|.++|+++|+++++|+++ .++.+.+. .++..  ..   .-+++.|++|++  +|.|.|
T Consensus       167 ~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y-~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G  245 (397)
T PRK07568        167 LISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVY-REFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIG  245 (397)
T ss_pred             EEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccc-hhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCcceE
Confidence            888777775  44   4789999999999999999985 44443321 11111  11   237889999987  478889


Q ss_pred             eEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCC
Q 013217          241 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGG  319 (447)
Q Consensus       241 ~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~  319 (447)
                      +++++++     ++.+.+....... .+.+...+ .+++.+++.. ...+++..+.+.++++.+.+.|.+. |+.+..+ 
T Consensus       246 ~~~~~~~-----~~~~~~~~~~~~~-~~~s~~~q-~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p-  316 (397)
T PRK07568        246 CLISKNK-----ELIAAAMKLCQAR-LSPPTLEQ-IGAAALLDTP-ESYFDEVREEYKKRRDILYEELNKIPGVVCEKP-  316 (397)
T ss_pred             EEecCCH-----HHHHHHHHHhhcc-CCCCcHHH-HHHHHHhhCC-HHHHHHHHHHHHHHHHHHHHHHhcCCCceecCC-
Confidence            9998642     5665554322221 23333333 3334445421 2234666777888889999999874 6654433 


Q ss_pred             CCCeeEEecCCCCCCCHHHHHHHHhh------cCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217          320 SDNHLVLVDLRPMGIDGARVEKILDM------ASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       320 ~~~~~~~v~~~~~~~~~~~~~~~L~~------~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~  393 (447)
                      ..+.++|+++...  +..++.+.|.+      .||.+..+...+..+...++++|+++.  .+    ++++++..+.|.+
T Consensus       317 ~g~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~--~~----~~~~~~~~~~l~~  388 (397)
T PRK07568        317 KGAFYIIAKLPVD--DAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYV--LN----EEDLKRAMEILKE  388 (397)
T ss_pred             CcceEEEEecCCC--CHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEe--CC----HHHHHHHHHHHHH
Confidence            3456677777532  45667666643      689986532211111122468999964  22    7889999888888


Q ss_pred             HHHH
Q 013217          394 GVEI  397 (447)
Q Consensus       394 ~l~~  397 (447)
                      +++.
T Consensus       389 ~l~~  392 (397)
T PRK07568        389 ALEK  392 (397)
T ss_pred             HHHH
Confidence            7764

>PRK09275 aspartate aminotransferase; Provisional

Probab=99.89  E-value=1.1e-20  Score=189.94  Aligned_cols=342  Identities=15%  Similarity=0.164  Sum_probs=203.5

Q ss_pred             cCeeEecCCC--CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--C-CccceeeecCCc
Q 013217           21 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--E-NKWGVNVQPLSG   95 (447)
Q Consensus        21 ~~i~l~~~~n--~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~-~~~~~~v~~~sG   95 (447)
                      +.++|..++.  .+|+.+.++......+    .||..  .+.   ....|..+...+.+.++..  + ++  .+|.+|+|
T Consensus       101 ~~i~l~~g~p~~~~~~~v~e~~~~~~~~----~Y~~~--~g~---~~lreaia~~~~~~~~~~~~~~~~~--~~I~vT~G  169 (527)
T PRK09275        101 DAVSYVRDQLGFDADEFVYELVDGIIGD----NYPVP--DRM---LKHTEKIVKDYLRQEMCGGRPPKGE--FDLFAVEG  169 (527)
T ss_pred             HHHhhcCCCCCCCCCHHHHHHHHHHhcC----CCCCC--CCC---HHHHHHHHHHHHHhhccCCCCCCCc--CeEEEeCC
Confidence            3467766655  2366677755444322    23332  111   2334444444554443321  2 11  14556888


Q ss_pred             H-HHHHHHHHH-----hcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhh
Q 013217           96 S-PANFEVYTA-----ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILF  168 (447)
Q Consensus        96 s-~a~~~~~~a-----l~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~  168 (447)
                      + +|+..++.+     +++|||+|++++|.|..+..        .+.+.|...++++++.++ +++.+|++++++++++ 
T Consensus       170 a~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~--------~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~-  240 (527)
T PRK09275        170 GTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLE--------IPELPRYDLEVVHINADEENEWQYPDSELEKLRDP-  240 (527)
T ss_pred             HHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHH--------HHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCC-
Confidence            7 888888876     68999999999998876532        223444455777776654 3578999999998876 


Q ss_pred             CCcEEEEcCCCCCC--CCC---hHHHHHHHHH--hCCEEEEehhhhccccccccCCCCC---CcccEEEeCCCccc--CC
Q 013217          169 RPKLIIAGASAYPR--DFD---YPRMRQIADA--VGALLMMDMAHISGLVAASVVADPF---KYCDVVTTTTHKSL--RG  236 (447)
Q Consensus       169 ~~klii~~~~~~~~--~~~---~~~i~~ia~~--~g~~livD~a~~~g~~~~~~~~~~~---~~~Di~~~s~~K~l--~G  236 (447)
                      ++|+|++++|+||+  ..+   +++|.++|++  +|+++|+|+++. .+.. . +.+.+   +..-+++.|++|++  +|
T Consensus       241 ~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~-~f~~-~-~~s~~~~~~~~~I~v~SfSK~f~mtG  317 (527)
T PRK09275        241 SIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYG-TFVD-D-FRSLFAVLPYNTILVYSFSKYFGATG  317 (527)
T ss_pred             CCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCCh-hhcc-c-ccCHHHhCCCCEEEEeehhhhccCcH
Confidence            89999998888886  455   6788888965  499999999963 3332 1 11111   12358889999986  68


Q ss_pred             CCCceEEeecCCcchhhHHHHh--------------------------------hhccCCCCCCCCcHHHHH-H---HHH
Q 013217          237 PRGGMIFFKKDPVLGVELESAI--------------------------------NNAVFPGLQGGPHNHTIG-G---LAV  280 (447)
Q Consensus       237 p~gG~i~~~~~~~~~~~~~~~i--------------------------------~~~~~~~~~g~p~~~~~a-a---l~~  280 (447)
                      +|.|+++++++.. ...+.+.+                                .........|.+.+.+++ +   +.+
T Consensus       318 ~RlG~i~~~~~~v-~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~a  396 (527)
T PRK09275        318 WRLGVIALHEDNV-FDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFA  396 (527)
T ss_pred             hHHhhhhcCchhH-HHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Confidence            9999999987400 00011111                                111111122333334443 3   222


Q ss_pred             HHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeee-CCCCCeeEEecCCCCC---------------CCHHH-HHHHH
Q 013217          281 CLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVS-GGSDNHLVLVDLRPMG---------------IDGAR-VEKIL  343 (447)
Q Consensus       281 al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~v~~~~~~---------------~~~~~-~~~~L  343 (447)
                      +++. .....++..+.+.++++.+.+.|   |+.+.. ++...+++|+|+...+               .+..+ +.+++
T Consensus       397 ll~~-~~~~~~~~~~~~~~Rr~~l~~~L---g~~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~f~~~Ll  472 (527)
T PRK09275        397 LLDE-EDAYKKAMKDIIRRRYKALYEGL---GLPEPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPVDLLFRLA  472 (527)
T ss_pred             HHhC-chHHHHHHHHHHHHHHHHHHHHc---CCCCcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHHHHHHHHH
Confidence            2332 11223555667777777777766   544321 2234677788875311               13444 44566


Q ss_pred             hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHHH
Q 013217          344 DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITL  399 (447)
Q Consensus       344 ~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~  399 (447)
                      ++.||.+    +||.......+++|+++...     +++++.++.+.|.+.+..+.
T Consensus       473 ~e~gV~v----~PG~~Fg~~~~~vRis~a~~-----~~~~~~~~~~rl~~~l~~y~  519 (527)
T PRK09275        473 EETGVVL----LPGGGFGGPEWSVRVSLANL-----NEEDYAKIGKAIRKLLDEYY  519 (527)
T ss_pred             hcCCEEE----eCchhhCCCCCeEEEEEecC-----CHHHHHHHHHHHHHHHHHHH
Confidence            7899998    55554211245799997422     37899999999999888764

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.89  E-value=2.7e-21  Score=188.66  Aligned_cols=310  Identities=16%  Similarity=0.112  Sum_probs=199.1

Q ss_pred             CeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-HHHH
Q 013217           22 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANF  100 (447)
Q Consensus        22 ~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a~~  100 (447)
                      .+.|..+||+.++...  +.....+    .||..++       ..+    ++++++.+|++++    +|.+++|+ +++.
T Consensus        30 ~~~l~~Nenp~~~~~~--~~~~~~~----~Yp~~~~-------~~l----~~~~a~~~g~~~~----~I~~~~Gs~e~i~   88 (351)
T PRK01688         30 DVWLNANEYPTAVEFQ--LTQQTLN----RYPECQP-------KAV----IENYAAYAGVKPE----QVLVSRGADEGIE   88 (351)
T ss_pred             ceEecCCCCCCCCChh--hcccccc----cCCCCCh-------HHH----HHHHHHHhCCCHH----HEEEcCCHHHHHH
Confidence            4889999998643321  1111112    3444321       233    3578888999886    45568988 8999


Q ss_pred             HHHHHhcCCC-CEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCC
Q 013217          101 EVYTAILKPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA  179 (447)
Q Consensus       101 ~~~~al~~pg-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~  179 (447)
                      .++.++++|| |+|++.+|.|+.+.        ..+...|.  +++.++++ +++.+|++++++++ + ++++|+++.|+
T Consensus        89 ~~~~~~~~~g~~~vli~~P~y~~y~--------~~~~~~G~--~~~~v~~~-~~~~~d~~~l~~~~-~-~~~lv~l~nPn  155 (351)
T PRK01688         89 LLIRAFCEPGKDAILYCPPTYGMYS--------VSAETIGV--EIRTVPTL-DNWQLDLPAIADNL-D-GVKVVYVCSPN  155 (351)
T ss_pred             HHHHHhcCCCCCEEEEcCCCHHHHH--------HHHHHcCC--EEEEeecC-CCCCCCHHHHHHhc-c-CCcEEEEeCCC
Confidence            8999999997 89999988775432        12334554  45555565 35789999999887 4 89999999889


Q ss_pred             CCC--CCChHHHHHHHHHh--CCEEEEehhhhccccccccCCCCCC-c-ccEEEeCCCccc--CCCCCceEEeecCCcch
Q 013217          180 YPR--DFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK-Y-CDVVTTTTHKSL--RGPRGGMIFFKKDPVLG  251 (447)
Q Consensus       180 ~~~--~~~~~~i~~ia~~~--g~~livD~a~~~g~~~~~~~~~~~~-~-~Di~~~s~~K~l--~Gp~gG~i~~~~~~~~~  251 (447)
                      ||+  ..+.+++.++++..  +.++++|+++ ..+.........+. + --+++.|++|++  +|.|.|++++++     
T Consensus       156 NPTG~~~~~~~l~~l~~~~~~~~~vivDEay-~~f~~~~s~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~i~~~-----  229 (351)
T PRK01688        156 NPTGNLINPQDLRTLLELTRGKAIVVADEAY-IEFCPQASLAGWLAEYPHLVILRTLSKAFALAGLRCGFTLANE-----  229 (351)
T ss_pred             CCCCCCCCHHHHHHHHHhCCCCcEEEEECch-hhcCCCCChHHHHhhCCCEEEEecchHhhcCHHHHHhHHhCCH-----
Confidence            886  67777777766542  6899999996 33321100000001 1 237889999986  477789999887     


Q ss_pred             hhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCCCCeeEEecCC
Q 013217          252 VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLVLVDLR  330 (447)
Q Consensus       252 ~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~v~~~  330 (447)
                       ++.+.+.+...+...   +....++...++.......+++.++.+.++++++.+.|.+. |+..+.+ +...++|+++.
T Consensus       230 -~~i~~l~~~~~~~~v---~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p-s~~nfi~~~~~  304 (351)
T PRK01688        230 -EVINLLLKVIAPYPL---STPVADIAAQALSPQGIAAMRERVAEINANRQWLIAALKEIPCVEQVFD-SETNYILARFT  304 (351)
T ss_pred             -HHHHHHHhccCCCCC---CHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECC-CCCcEEEEEcC
Confidence             677777765444321   22222222223331101234566777888889999999885 5543333 34556777764


Q ss_pred             CCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217          331 PMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  391 (447)
Q Consensus       331 ~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i  391 (447)
                          +..++.+.|.++||.++.....    +...+++||++.   +    ++|++++.++|
T Consensus       305 ----~~~~l~~~L~~~gi~vr~~~~~----~~~~~~iRis~~---~----~~e~~~l~~al  350 (351)
T PRK01688        305 ----ASSAVFKSLWDQGIILRDQNKQ----PGLSNCLRITIG---T----REECQRVIDAL  350 (351)
T ss_pred             ----CHHHHHHHHHHCCeEEEECCCc----CCCCCeEEEeCC---C----HHHHHHHHHhh
Confidence                4677888888999999753211    112458999965   3    79999998876

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.88  E-value=4e-20  Score=197.31  Aligned_cols=304  Identities=19%  Similarity=0.178  Sum_probs=203.5

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc----CCCC----EEEEecCCCCcccCCCcccccccc
Q 013217           64 IDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----KPHD----RIMGLDLPHGGHLSHGFMTPKRRV  135 (447)
Q Consensus        64 ~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~----~pgd----~Vl~~~~~~~~~~~~~~~~~~~~~  135 (447)
                      .-+++...++++++++|.+.    +.+++.+|++++.+.++++.    ++||    +|++++..|+++..        .+
T Consensus       540 ~l~~i~e~q~~l~eltG~d~----~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~--------sa  607 (954)
T PRK05367        540 YRELIDQLEAWLAEITGYDA----VSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPA--------SA  607 (954)
T ss_pred             HHHHHHHHHHHHHHHHCCCC----EEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHH--------HH
Confidence            33455566789999999985    46666777788866555543    5676    58888887876532        22


Q ss_pred             ccccceeEEEecccCCCCCCCCHHHHHHHhhhh--CCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhcccc
Q 013217          136 SGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLV  211 (447)
Q Consensus       136 ~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~--~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~  211 (447)
                      ...|.  +++.++++ .++.+|+++|+++++++  ++.+|+++.+++.+  ..|+++|+++||++|+++++|+||..+++
T Consensus       608 ~~~G~--~vv~v~~d-~~G~iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~  684 (954)
T PRK05367        608 VMAGM--KVVVVACD-ENGNIDLDDLRAKAEEHADNLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANMNAQV  684 (954)
T ss_pred             HHCCC--EEEEECCC-CCCCcCHHHHHHHHhccCCCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChhhcc
Confidence            34454  56666666 45899999999999764  35566666555555  36899999999999999999999976654


Q ss_pred             ccccCCCCCC-cccEEEeCCCcccCCCCC------ceEEeecCCcchhhHHHHhhhc-----cCCCCCCCCcHHH----H
Q 013217          212 AASVVADPFK-YCDVVTTTTHKSLRGPRG------GMIFFKKDPVLGVELESAINNA-----VFPGLQGGPHNHT----I  275 (447)
Q Consensus       212 ~~~~~~~~~~-~~Di~~~s~~K~l~Gp~g------G~i~~~~~~~~~~~~~~~i~~~-----~~~~~~g~p~~~~----~  275 (447)
                      ..   ..|.. ++|++++|+||||++|.|      |++++++      .+...+...     ......|......    .
T Consensus       685 ~l---~~pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~------~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al  755 (954)
T PRK05367        685 GL---ARPGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKA------HLAPFLPGHPVQIAGGETGIGAVSAAPFGSAS  755 (954)
T ss_pred             CC---CChhhcCCCEEEecCcccCCCCcCCCCCceEEEeecc------cccccCCCCccCcCCCCCCcCcchhHHHHHHH
Confidence            32   12322 699999999999865554      5888876      333222111     0111112222111    1


Q ss_pred             HH--HHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeC---CCCCeeEEecCCCC----CCCHHHHHHHHhhc
Q 013217          276 GG--LAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSG---GSDNHLVLVDLRPM----GIDGARVEKILDMA  346 (447)
Q Consensus       276 aa--l~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~---~~~~~~~~v~~~~~----~~~~~~~~~~L~~~  346 (447)
                      .+  .+..++.+..+++++..++...++++++++|.+ ++++...   +...|-+++++++.    +++..++.+.|.++
T Consensus       756 ~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~-~~~~~~~~~~~~~~~e~i~~~~~~~~~~g~~~~di~krL~d~  834 (954)
T PRK05367        756 ILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKD-HYPVLYTGANGRVAHECILDLRPLKESTGITVDDIAKRLIDY  834 (954)
T ss_pred             HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh-hcCccccCCCCCcccceEEEeecccccCCCCHHHHHHHHHHC
Confidence            11  222344555567788888888999999999987 4554332   12245566776431    35668899999999


Q ss_pred             CeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 013217          347 SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAK  402 (447)
Q Consensus       347 gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~~~~  402 (447)
                      ||.......|      ..+.+||++...++    ++|++++++++..+......++
T Consensus       835 G~~~~t~~~p------v~~~l~i~ptE~~s----~~elDr~~~al~~i~~e~~~~~  880 (954)
T PRK05367        835 GFHAPTMSFP------VAGTLMVEPTESES----KAELDRFCDAMIAIRAEIDEVE  880 (954)
T ss_pred             CCeEeecCCc------cCCEEEEEeeecCC----HHHHHHHHHHHHHHHHHHHHhh
Confidence            9987542222      24689999988888    9999999999988887765543

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=99.88  E-value=2.2e-20  Score=187.39  Aligned_cols=303  Identities=17%  Similarity=0.158  Sum_probs=198.5

Q ss_pred             HHHHHHHHHHHHHHcCCC--CCccceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccce
Q 013217           65 DELETLCQKRALAAFNLD--ENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY  141 (447)
Q Consensus        65 ~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~  141 (447)
                      ..+.+...+++....|..  ++    +|.+|+|+ +|+..++..+++|||+|++.+|.|.+.+.        .++..|. 
T Consensus       135 ~~LR~~ia~~l~~~~g~~~~~~----~IiiT~G~q~al~l~~~~l~~pGd~v~vE~PtY~~~~~--------~~~~~g~-  201 (459)
T COG1167         135 PELREAIAAYLLARRGISCEPE----QIVITSGAQQALDLLLRLLLDPGDTVLVEDPTYPGALQ--------ALEALGA-  201 (459)
T ss_pred             HHHHHHHHHHHHHhcCCccCcC----eEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHHH--------HHHHcCC-
Confidence            344444455666455655  43    45669999 89999999999999999999998876642        3344554 


Q ss_pred             eEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCCCCC--CCCh---HHHHHHHHHhCCEEEEehhhhcccccccc
Q 013217          142 FESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG-ASAYPR--DFDY---PRMRQIADAVGALLMMDMAHISGLVAASV  215 (447)
Q Consensus       142 ~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~-~~~~~~--~~~~---~~i~~ia~~~g~~livD~a~~~g~~~~~~  215 (447)
                       +++++++|  ...+|+|+|++.+..++||++++. ..+||+  ..+.   ++|.++|++||+++|.|+.+ .-+.+.+.
T Consensus       202 -~~~~vp~d--~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y-~el~~~~~  277 (459)
T COG1167         202 -RVIPVPVD--EDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYY-GELRYDGP  277 (459)
T ss_pred             -cEEecCCC--CCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcc-hhhhcCCC
Confidence             66776676  346999999999988889999998 446775  4444   69999999999999999974 33343332


Q ss_pred             CCCCCC-----cccEEEeCCCccc-CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHH-hcCh
Q 013217          216 VADPFK-----YCDVVTTTTHKSL-RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH-AQSP  288 (447)
Q Consensus       216 ~~~~~~-----~~Di~~~s~~K~l-~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~-~~~~  288 (447)
                      .+.++.     +.-++++|++|++ +|.|.||++.++      ++.+.+.........+++. ....+++.-+.. ....
T Consensus       278 p~~~l~~ld~~~rViy~gSFSK~l~PglRlG~vv~p~------~~~~~~~~~k~~~~~~~s~-~~Q~~la~~l~~G~~~~  350 (459)
T COG1167         278 PPPPLKALDAPGRVIYLGSFSKTLAPGLRLGYVVAPP------ELIEKLLRLKQAADLGPSS-LSQAALAAFLLSGHYDR  350 (459)
T ss_pred             CCCChHhhCCCCCEEEEeeehhhcccccceeeeeCCH------HHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHcCCHHH
Confidence            222222     2348999999997 689999999998      6666554432222222222 222233322221 0011


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHCC--cEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEcc-CCCCCCCCCCCCC
Q 013217          289 EFKVYQNKVVSNCRALASRLVELG--YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNK-NSVPGDKSALVPG  365 (447)
Q Consensus       289 ~~~~~~~~~~~~~~~l~~~L~~~g--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~-~~~p~~~~~~~~~  365 (447)
                      ..+...+.+.++.+.+.+.|.+.+  ...+..+....++|+.+.. +++..++...+.++||.+.. +... ...+...+
T Consensus       351 hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p~gG~flwl~l~~-~~~~~~l~~~a~~~gv~i~~~g~~f-~~~~~~~~  428 (459)
T COG1167         351 HLRRLRREYARRRDALLEALAEYLPELATWTRPEGGLFLWLELPE-GIDARELLAAALEKGVVVTPLGSAF-SADGDPRN  428 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCeeeecCCceEEEEEEcCC-CCCHHHHHHHHHHCCCEEEcCCccc-cCCCCCCC
Confidence            124445555666677788887732  2222333446778888854 57888888888889999865 2211 11111345


Q ss_pred             eEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          366 GIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       366 ~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      ++|+|+...+     ++++++.++.|.+++...
T Consensus       429 ~~Rl~~s~~~-----~e~i~~gi~~l~~~~~~~  456 (459)
T COG1167         429 GLRLSFSSPS-----EEEIEEGIKRLAALLREA  456 (459)
T ss_pred             eEEEEcCCCC-----HHHHHHHHHHHHHHHHHH
Confidence            8999987554     688888888888777643

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.88  E-value=8.1e-21  Score=185.70  Aligned_cols=310  Identities=19%  Similarity=0.163  Sum_probs=198.5

Q ss_pred             cCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-HHH
Q 013217           21 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PAN   99 (447)
Q Consensus        21 ~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a~   99 (447)
                      ..+.|..+||+.++.-.-.+..  .++    ||..      . ...+.    +.+++++|++++    +|.+++|+ +++
T Consensus        32 ~~~~l~~ne~~~~~~~~~~~~~--~~~----Yp~~------~-~~~Lr----~aia~~~~~~~~----~I~it~Gs~~~i   90 (354)
T PRK04635         32 GDIWINANESPFNNEYKLDLAR--LNR----YPEC------Q-PPELI----NAYSAYAGVAPE----QILTSRGADEAI   90 (354)
T ss_pred             CcEEeeCCCCCCCCChhhhhHH--hcc----CCCC------C-HHHHH----HHHHHHhCcCHH----HEEEeCCHHHHH
Confidence            3478999999764331111111  122    3322      1 23443    567778899886    44558988 899


Q ss_pred             HHHHHHhcCCC-CEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCC
Q 013217          100 FEVYTAILKPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS  178 (447)
Q Consensus       100 ~~~~~al~~pg-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~  178 (447)
                      ..++.++++|| |+|++.+|.|..+.        ..+...|.  +++.++++ +++.+|++.+++ + + +||+|+++++
T Consensus        91 ~~~~~~~~~~g~d~vlv~~P~y~~y~--------~~~~~~g~--~v~~v~~~-~~~~~~~~~l~~-~-~-~~~li~i~nP  156 (354)
T PRK04635         91 ELLIRAFCEPGQDSIACFGPTYGMYA--------ISAETFNV--GVKALPLT-ADYQLPLDYIEQ-L-D-GAKLVFICNP  156 (354)
T ss_pred             HHHHHHhcCCCCCeEEEcCCChHHHH--------HHHHHcCC--EEEEEecC-CCCCCCHHHHHh-c-c-CCCEEEEeCC
Confidence            99999999999 89999988776432        12234454  55555565 357899998873 3 4 8999999988


Q ss_pred             CCCC--CCChHHHHHHHHHh-CCEEEEehhhhccccccccCCCCCC--cccEEEeCCCccc--CCCCCceEEeecCCcch
Q 013217          179 AYPR--DFDYPRMRQIADAV-GALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLG  251 (447)
Q Consensus       179 ~~~~--~~~~~~i~~ia~~~-g~~livD~a~~~g~~~~~~~~~~~~--~~Di~~~s~~K~l--~Gp~gG~i~~~~~~~~~  251 (447)
                      +||+  ..+.+++.++++.. ++++++|+++. .+...........  ..-+++.|+||++  +|.|.|+++.++     
T Consensus       157 ~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~-~~~~~~s~~~~~~~~~~~iv~~S~SK~~~l~GlRlG~~i~~~-----  230 (354)
T PRK04635        157 NNPTGTVIDRADIEQLIEMTPDAIVVVDEAYI-EFCPEYSVADLLASYPNLVVLRTLSKAFALAGARCGFTLANE-----  230 (354)
T ss_pred             CCCCCccCCHHHHHHHHHhCCCcEEEEeCchH-hhccCcchHHHHhhCCCEEEEechHHHhhhhHHHHhhhhCCH-----
Confidence            9886  78899999998864 79999999963 3221100000000  0126789999986  577889999987     


Q ss_pred             hhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCC-cEeeeCCCCCeeEEecCC
Q 013217          252 VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG-YKLVSGGSDNHLVLVDLR  330 (447)
Q Consensus       252 ~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~v~~~  330 (447)
                       ++.+.+.....+.  +.+...+.++ ..++........++..+++.++++.+.+.|++.+ +++..+  ...++|+++.
T Consensus       231 -~~~~~l~~~~~~~--~~~~~~~~~a-~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~--~g~f~~~~~~  304 (354)
T PRK04635        231 -ELIEILMRVIAPY--PVPLPVSEIA-TQALSEAGLARMKFQVLDLNAQGARLQAALSMYGGAKVLEG--NGNYVLAKFD  304 (354)
T ss_pred             -HHHHHHHhhcCCC--CCCHHHHHHH-HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCceECCC--CCcEEEEECC
Confidence             6777776543332  2222222222 2233221111234556677888889999998865 766543  2345677764


Q ss_pred             CCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217          331 PMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       331 ~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~  393 (447)
                          +..++.+.|.++||.++....     +..++++|+++   .+    ++|++++.++|++
T Consensus       305 ----~~~~~~~~l~~~gv~v~~~~~-----~~~~~~lRis~---~~----~e~~~~l~~al~~  351 (354)
T PRK04635        305 ----DVDAVFKALWDAGIVARAYKD-----PRLANCIRFSF---SN----RAETDKLIGLIRN  351 (354)
T ss_pred             ----CHHHHHHHHHHCCEEEEECCC-----CCCCCeEEEEe---CC----HHHHHHHHHHHHH
Confidence                456788889999999964311     11245899995   34    8999999998865

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.88  E-value=2.9e-20  Score=182.15  Aligned_cols=313  Identities=16%  Similarity=0.125  Sum_probs=200.5

Q ss_pred             cCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-H
Q 013217           21 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P   97 (447)
Q Consensus        21 ~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~   97 (447)
                      ..++|..++|.  +||.+.+++.+.+..  ..+||..    |   ...+.    +.+++.++++++    +|.+++|+ +
T Consensus        31 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~--~~~Y~~~----~---~~~lr----~~ia~~~~~~~~----~I~it~G~~~   93 (357)
T PRK14809         31 DLVKLSSNENPHGPSPAAVEAIREAAER--VHSYPKA----S---HADLT----AALADRWDVSPE----QVWLANGGDG   93 (357)
T ss_pred             ceeEecCCCCCCCCCHHHHHHHHHHHhh--hhcCCCC----C---HHHHH----HHHHHHhCCCcc----eEEECCCHHH
Confidence            56889888885  578888888776543  2344421    1   12333    456677888876    45568887 8


Q ss_pred             HHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcC
Q 013217           98 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA  177 (447)
Q Consensus        98 a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~  177 (447)
                      ++..++.++++|||+|++.+|.|+.+..        .....|..+..++++.+ +++.+|.+++++.. + ++|+|++++
T Consensus        94 al~~~~~~~~~~gd~V~v~~P~y~~~~~--------~~~~~g~~~~~~~l~~~-~~~~~~~~~~~~~~-~-~~k~i~l~~  162 (357)
T PRK14809         94 ALDYLARAMLDPGDTVLVPDPGFAYYGM--------SARYHHGEVREYPVSKA-DDFEQTADTVLDAY-D-GERIVYLTS  162 (357)
T ss_pred             HHHHHHHHhcCCCCEEEEeCCChHHHHH--------HHHHcCCeEEEEecccC-cCCCcCHHHHHHhh-c-CCcEEEEeC
Confidence            8888999999999999999987653311        22344544444443222 34678888887665 2 689999998


Q ss_pred             CCCCC--CCChHHHHHHHHHh--CCEEEEehhhhccccccccCCCC-CC--cccEEEeCCCccc--CCCCCceEEeecCC
Q 013217          178 SAYPR--DFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADP-FK--YCDVVTTTTHKSL--RGPRGGMIFFKKDP  248 (447)
Q Consensus       178 ~~~~~--~~~~~~i~~ia~~~--g~~livD~a~~~g~~~~~~~~~~-~~--~~Di~~~s~~K~l--~Gp~gG~i~~~~~~  248 (447)
                      ++||+  ..+.+++.++++..  ++++|+|+++. .+...+. ..+ +.  ..-+++.|++|++  +|.|.|++++++  
T Consensus       163 p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De~y~-~~~~~~~-~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~--  238 (357)
T PRK14809        163 PHNPTGSEIPLDEVEALAERTDEETLVVVDEAYG-EFAERPS-AVALVEERDDVAVLRTFSKAYGLAGLRLGYAVVPE--  238 (357)
T ss_pred             CCCCCCcCCCHHHHHHHHHhCccCcEEEEechhh-hccCCch-hHHHHhhCCCEEEEecchhHhcCcchhheeeecCH--
Confidence            88886  67777777777654  78999999963 3332211 000 11  1237789999997  588889999987  


Q ss_pred             cchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChh-HHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEe
Q 013217          249 VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPE-FKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLV  327 (447)
Q Consensus       249 ~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v  327 (447)
                          ++.+++.+...+.   +.+.....+...++.   .++ +++..+.+.++++.+.+.|...++   .  ....++|+
T Consensus       239 ----~~~~~~~~~~~~~---~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~~~---~--~~g~f~~~  303 (357)
T PRK14809        239 ----EWADAYARVNTPF---AASELACRAGLAALD---DDEHVERTVETARWAREYIREELDAPTW---E--SAGNFVLA  303 (357)
T ss_pred             ----HHHHHHHHhCCCC---CCCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHhcCccC---C--CCCCEEEE
Confidence                6777776643222   223322222222332   223 355566666667777777754322   2  23456677


Q ss_pred             cCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          328 DLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       328 ~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      ++.    +..++.+.|.++||.+..+...+     .++++|+++.   +    .+++++..+.|+++++
T Consensus       304 ~~~----~~~~~~~~l~~~gv~v~~g~~f~-----~~~~iRls~~---~----~~~~~~~l~~L~~~l~  356 (357)
T PRK14809        304 EVG----DASAVAEAAQERGVIVRDCTSFG-----LPECIRITCG---T----REETERAVEVLNEVLA  356 (357)
T ss_pred             ECC----CHHHHHHHHHHCCEEEEECccCC-----CCCeEEEecC---C----HHHHHHHHHHHHHHhc
Confidence            763    45778888989999996543221     1358999853   3    6889999988887653

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=99.88  E-value=2.1e-20  Score=183.63  Aligned_cols=318  Identities=14%  Similarity=0.093  Sum_probs=196.9

Q ss_pred             HHhhcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC---CCCccceeee
Q 013217           17 ERQFKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL---DENKWGVNVQ   91 (447)
Q Consensus        17 ~~~~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~---~~~~~~~~v~   91 (447)
                      ......++|..++..  .++.+++++......   .+|+..      .....+.+.+.+++.+.+|.   +++    +|.
T Consensus        24 ~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~---~~Y~~~------~G~~~lr~~ia~~l~~~~~~~~~~~~----~I~   90 (364)
T PRK07865         24 AHPDGIVDLSVGTPVDPVPPVIQEALAAAADA---PGYPTT------AGTPELREAIVGWLARRRGVTGLDPA----AVL   90 (364)
T ss_pred             hcCCCEEEcCCCCCCCCCCHHHHHHHHHHHhh---CCCCCc------cCCHHHHHHHHHHHHHHcCCCCCCcc----cEE
Confidence            333456788766542  357788887654322   133322      11234555555677777664   354    455


Q ss_pred             cCCcH-HHHHHHHHHh-cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhC
Q 013217           92 PLSGS-PANFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR  169 (447)
Q Consensus        92 ~~sGs-~a~~~~~~al-~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~  169 (447)
                      +|+|+ +++..++..+ ++|||+|++.+|.|.++..        .+...|.  +++.++        +++++..    .+
T Consensus        91 it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~~~~~--------~~~~l~~----~~  148 (364)
T PRK07865         91 PVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTYEV--------GARLAGA--TVVRAD--------SLTELGP----QR  148 (364)
T ss_pred             EccChHHHHHHHHHHHcCCCCCEEEECCCCcccHHH--------HHHhcCC--EEEecC--------ChhhCCc----cc
Confidence            69998 7777777777 7999999999998876532        2233443  444432        2233322    37


Q ss_pred             CcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC-------C-cccEEEeCCCccc--
Q 013217          170 PKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-------K-YCDVVTTTTHKSL--  234 (447)
Q Consensus       170 ~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~-------~-~~Di~~~s~~K~l--  234 (447)
                      +++|+++.++||+  ..+   +++|.++|+++|+++++|+++. .+...+.....+       . ...+++.|++|.+  
T Consensus       149 ~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~  227 (364)
T PRK07865        149 PALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYL-ELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNL  227 (364)
T ss_pred             ceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchh-hhccCCCCCccccccccCCccceEEEEeechhccCC
Confidence            8999998788886  444   5788888999999999999964 333322111111       0 1248899999986  


Q ss_pred             CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcE
Q 013217          235 RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYK  314 (447)
Q Consensus       235 ~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~  314 (447)
                      +|.|+||++.++      ++.+.+.........+. +.....++..++..  ....++..+.+.++++.+.+.|++.|+.
T Consensus       228 ~GlRiG~i~~~~------~~~~~~~~~~~~~~~~~-~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~  298 (364)
T PRK07865        228 AGYRAGFVAGDP------ALVAELLEVRKHAGMMV-PAPVQAAMVAALGD--DAHVREQRERYARRRAVLRPALEAAGFR  298 (364)
T ss_pred             CceeeEEEecCH------HHHHHHHHHHHhcCCCc-CHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            588899999877      67666654322211222 22222333333322  1223556677788888899999888877


Q ss_pred             eeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHH
Q 013217          315 LVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH  392 (447)
Q Consensus       315 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~  392 (447)
                      +..+ ..+.++|+.+.   .+..++.+.|.++||.+..+...+   +..++++||++..  +    ++++++.++.|.
T Consensus       299 ~~~~-~~~~~~~~~~~---~~~~~~~~~l~~~gv~v~pg~~f~---~~~~~~iRi~~~~--~----~~~~~~~~~~l~  363 (364)
T PRK07865        299 VDHS-EAGLYLWATRG---EDCWDTVAWLAERGILVAPGDFYG---PAGAQHVRVALTA--T----DERIAAAVERLA  363 (364)
T ss_pred             ccCC-CccEEEEEeCC---CCHHHHHHHHHHCCEEEeCccccC---cCCCCEEEEEecC--C----HHHHHHHHHHhh
Confidence            6543 33556677653   245677888889999996542211   1124689999753  3    788888887763

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=99.88  E-value=3.1e-20  Score=181.77  Aligned_cols=326  Identities=14%  Similarity=0.085  Sum_probs=198.9

Q ss_pred             HHHHHHHHHHHhhcCeeEecCCC--CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC---C
Q 013217            8 VCEIITKEKERQFKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL---D   82 (447)
Q Consensus         8 ~~~~~~~e~~~~~~~i~l~~~~n--~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~---~   82 (447)
                      +...++++.+..+..++|..+++  +.++.+.+++.+....   .+|+..      .....+.+.+.+++.+.+|.   +
T Consensus         9 ~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~---~~Y~~~------~G~~~lr~~ia~~~~~~~~~~~~~   79 (357)
T TIGR03539         9 LAPYKAKAASHPDGIVDLSVGTPVDPVPPLIRAALAAAADA---PGYPQT------WGTPELREAIVDWLERRRGVPGLD   79 (357)
T ss_pred             HHHHHHHhhhCCCCeEEccCCCCCCCCCHHHHHHHHHHHhh---CCCCcc------cCCHHHHHHHHHHHHHhcCCCCCC
Confidence            34444555443445578776654  3467788887654321   234332      11234554555677776664   3


Q ss_pred             CCccceeeecCCcH-HHHHHHHHHh-cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHH
Q 013217           83 ENKWGVNVQPLSGS-PANFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDM  160 (447)
Q Consensus        83 ~~~~~~~v~~~sGs-~a~~~~~~al-~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~  160 (447)
                      ++    +|.+|+|+ +++..++..+ ++|||.|++.+|.|.++..        .+...|.  +++.+  +      |+++
T Consensus        80 ~~----~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~~~v--~------~~~~  137 (357)
T TIGR03539        80 PT----AVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYEV--------GALLAGA--TPVAA--D------DPTE  137 (357)
T ss_pred             cC----eEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcHHHHH--------HHHhcCC--EEecc--C------Chhh
Confidence            44    45568887 7877777777 7999999999998866531        2234443  44443  1      2233


Q ss_pred             HHHHhhhhCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC--------cccEEE
Q 013217          161 LEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--------YCDVVT  227 (447)
Q Consensus       161 l~~~~~~~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~--------~~Di~~  227 (447)
                      +.    ..++++|+++.++||+  ..+   +++|.++|+++|+++|+|+++. .+.+.+.....+.        .-.+++
T Consensus       138 l~----~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~~vi~~  212 (357)
T TIGR03539       138 LD----PVGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYL-ELGWEGRPVSILDPRVCGGDHTGLLAV  212 (357)
T ss_pred             cC----ccCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchh-hhccCCCCccceecccCCCccccEEEE
Confidence            22    2378999998888886  454   5678889999999999999963 3332221111110        123788


Q ss_pred             eCCCccc--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHH
Q 013217          228 TTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA  305 (447)
Q Consensus       228 ~s~~K~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~  305 (447)
                      .|++|.+  +|.|+|++++++      ++.+.+......... +++.....++..++..  ....+...+.+.++++.+.
T Consensus       213 ~S~SK~~~~~G~R~G~~i~~~------~~~~~~~~~~~~~~~-~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~  283 (357)
T TIGR03539       213 HSLSKRSNLAGYRAGFVAGDP------ALVAELLTVRKHAGL-MVPAPVQAAMVAALGD--DGHVAEQKARYAARRAQLK  283 (357)
T ss_pred             eccccccCCCceeEEEEecCH------HHHHHHHHHHhhccc-CCCHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHH
Confidence            9999985  788999999876      676666543322222 2333333333334421  1223555667778888898


Q ss_pred             HHHHHCCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHH
Q 013217          306 SRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFV  385 (447)
Q Consensus       306 ~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~  385 (447)
                      +.|.+.|+.+..+ ..+.++|+.+..   +..++.+.|.++||.+..+...+   +...+++|+++..  +    +++++
T Consensus       284 ~~L~~~g~~~~~p-~~~~~~~~~~~~---~~~~~~~~l~~~gV~v~pg~~f~---~~~~~~iRis~~~--~----~~~i~  350 (357)
T TIGR03539       284 PALEKAGFRIDHS-EAGLYLWATRGE---DAWDTVDRLAELGILVAPGDFYG---PAGSQHVRVALTA--T----DERIA  350 (357)
T ss_pred             HHHHHcCCCCcCC-CccEEEEEECCC---CHHHHHHHHHhCCEEECCccccC---CCCCCeEEEEecC--C----HHHHH
Confidence            9998888775543 345666776532   45678888999999996542211   1124689999753  3    67777


Q ss_pred             HHHHHH
Q 013217          386 AIADFI  391 (447)
Q Consensus       386 ~l~~~i  391 (447)
                      +..+.|
T Consensus       351 ~~~~~l  356 (357)
T TIGR03539       351 AAVARL  356 (357)
T ss_pred             HHHHhh
Confidence            766544

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK15029 arginine decarboxylase; Provisional

Probab=99.88  E-value=6.9e-21  Score=196.97  Aligned_cols=298  Identities=15%  Similarity=0.087  Sum_probs=204.4

Q ss_pred             HHHHHHHHHcCCCCCccceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecc
Q 013217           70 LCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR  148 (447)
Q Consensus        70 ~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  148 (447)
                      .+++.++++||++.+.+     .++|| .+|.+++++++++||+|++....|-+.+.        .+.++|.....+.-.
T Consensus       209 eAq~~aA~~fgA~~t~F-----lvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~--------al~L~ga~Pvyl~P~  275 (755)
T PRK15029        209 ESEKYAARVFGADRSWS-----VVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQ--------GLILTGAKPVYMVPS  275 (755)
T ss_pred             HHHHHHHHHhCCCcEEE-----EeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHH--------HHHHcCCeEEEeccc
Confidence            56789999999997633     26776 89999999999999999998777666542        345666533322211


Q ss_pred             cCCCC---CCCC-----HHHHHHHhhhh---------CCcEEEEcCCCCCC-CCChHHHHHHHHHhCCEEEEehhhhccc
Q 013217          149 LDEST---GLVD-----YDMLEKTAILF---------RPKLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGL  210 (447)
Q Consensus       149 ~~~~~---~~id-----~~~l~~~~~~~---------~~klii~~~~~~~~-~~~~~~i~~ia~~~g~~livD~a~~~g~  210 (447)
                      .+ +.   +.++     ++.+++++..+         +|+++++++|+|-+ +.|+++|+++|+++|++|++|+||++.+
T Consensus       276 ~~-~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~  354 (755)
T PRK15029        276 RN-RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYA  354 (755)
T ss_pred             cc-ccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCCcceeeCHHHHHHHHHhcCCeEEEECcccccc
Confidence            11 22   2345     99999988652         23388888888877 7899999999999999999999998876


Q ss_pred             cccccCC--CCC-------Cccc-EEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHH
Q 013217          211 VAASVVA--DPF-------KYCD-VVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLA  279 (447)
Q Consensus       211 ~~~~~~~--~~~-------~~~D-i~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~  279 (447)
                      .+.+..+  +++       .++| +++-|+||+|++... ++|.++.+...  --.++++.......+++|++..+|++.
T Consensus       355 ~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~~~~--id~~r~~~~l~~~qSTSPSY~LmASLD  432 (755)
T PRK15029        355 RFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGA--INFSRFNQAYMMHATTSPLYAICASND  432 (755)
T ss_pred             ccCccccccccccccccccCCCceEEEEchhhcccchhhhhhheeCCCccc--cCHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence            5554443  333       3688 999999999998876 78888653100  012455555444446789999999999


Q ss_pred             HHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-C------------------------------------------cEee
Q 013217          280 VCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-G------------------------------------------YKLV  316 (447)
Q Consensus       280 ~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g------------------------------------------~~~~  316 (447)
                      +|.+++.....++..++..+.+..+++.+.+. +                                          +.++
T Consensus       433 ~ar~~m~~~~G~~l~~~~i~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (755)
T PRK15029        433 VAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVM  512 (755)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhccccccccccccccccCccccccccccccccccccchhhhccccceeee
Confidence            99988765334667788888888898888662 2                                          2222


Q ss_pred             eCC---------------CCCeeEEecCCCCCCCHH---------HHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecC
Q 013217          317 SGG---------------SDNHLVLVDLRPMGIDGA---------RVEKILDMASITLNKNSVPGDKSALVPGGIRIGSP  372 (447)
Q Consensus       317 ~~~---------------~~~~~~~v~~~~~~~~~~---------~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~  372 (447)
                      .++               -|.--+++.++..+.+|.         ++.++|+++||.+....         ...+=+   
T Consensus       513 ~~~~~~~g~~~~~~~~~~lDp~Klti~~~~~g~sG~~~~~gip~~~l~~~L~~~gI~~E~~~---------~~~vL~---  580 (755)
T PRK15029        513 HPGESWHGFKDLPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTT---------DFQIMF---  580 (755)
T ss_pred             cccccccCcccccccccccCCceEEEEcCCCCCCCcccccCCcHHHHHHHHHHcCCEEEecC---------CCeEEE---
Confidence            110               011113344444455666         89999999999996531         112322   


Q ss_pred             ccccCCCCHHHHHHHHHHHHHHHH
Q 013217          373 AMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       373 ~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                       +.+.|-++++++++.++|.+.-+
T Consensus       581 -l~s~g~t~~~~~~L~~aL~~~~~  603 (755)
T PRK15029        581 -LFSMGVTRGKWGTLVNTLCSFKR  603 (755)
T ss_pred             -EeCCCCCHHHHHHHHHHHHHHHH
Confidence             23334458999999998887633

>PRK07908 hypothetical protein; Provisional

Probab=99.88  E-value=4.2e-20  Score=180.40  Aligned_cols=316  Identities=14%  Similarity=0.142  Sum_probs=205.0

Q ss_pred             hhcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH
Q 013217           19 QFKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS   96 (447)
Q Consensus        19 ~~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs   96 (447)
                      .++.++|..++|.  +|+.+++++...+...  .+||..   .|   ...+    ++.+++++|+++++    |.+|+|+
T Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~~~---~g---~~~l----r~aia~~~~~~~~~----I~it~Ga   84 (349)
T PRK07908         21 GPGLLDFAVNVRHDTPPEWLRERLAARLGDL--AAYPST---ED---ERRA----RAAVAARHGRTPDE----VLLLAGA   84 (349)
T ss_pred             CCCeEEecCCCCCCCCCHHHHHHHHHHhhHh--hcCCCc---cc---hHHH----HHHHHHHhCcChhh----EEECCCH
Confidence            4567899888884  5788899988766431  234432   11   2233    35677788988764    4458887


Q ss_pred             -HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEE
Q 013217           97 -PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIA  175 (447)
Q Consensus        97 -~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~  175 (447)
                       +++..++.  ++|| .+++..|.+....        ..+...|.  +++.++++. ++.+|++.+    ++ +++++++
T Consensus        85 ~~al~~~~~--l~~~-~viv~~P~y~~~~--------~~~~~~G~--~i~~v~~~~-~~~~d~~~l----~~-~~~~i~l  145 (349)
T PRK07908         85 AEGFALLAR--LRPR-RAAVVHPSFTEPE--------AALRAAGI--PVHRVVLDP-PFRLDPAAV----PD-DADLVVI  145 (349)
T ss_pred             HHHHHHHHh--cCCC-eEEEeCCCChHHH--------HHHHHcCC--EEEeeccCc-ccCcChhHh----cc-CCCEEEE
Confidence             78777666  5775 4556666665432        12334454  666666663 367888854    33 7899999


Q ss_pred             cCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCC--CCc-ccEEEeCCCccc--CCCCCceEEeecCC
Q 013217          176 GASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADP--FKY-CDVVTTTTHKSL--RGPRGGMIFFKKDP  248 (447)
Q Consensus       176 ~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~--~~~-~Di~~~s~~K~l--~Gp~gG~i~~~~~~  248 (447)
                      ++++||+  ..+.++|.++|++ +.++|+|+++. .+... ..++.  ... ..+++.|+||++  +|.|.|+++.++  
T Consensus       146 ~np~NPTG~~~~~~~l~~l~~~-~~~iIvDe~y~-~~~~~-~~~~l~~~~~~~~i~i~S~SK~~~l~GlRiG~~~~~~--  220 (349)
T PRK07908        146 GNPTNPTSVLHPAEQLLALRRP-GRILVVDEAFA-DAVPG-EPESLAGDDLPGVLVLRSLTKTWSLAGLRVGYALGAP--  220 (349)
T ss_pred             cCCCCCCCCCcCHHHHHHHHhc-CCEEEEECcch-hhccC-CccccccccCCCEEEEeecccccCCccceeeeeecCH--
Confidence            8888886  7789999999974 88999999964 22221 11111  111 236678999975  588889999887  


Q ss_pred             cchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEec
Q 013217          249 VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVD  328 (447)
Q Consensus       249 ~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~  328 (447)
                          ++.+.+........   .+....+++...+.......+++..+++.++++.+.+.|.+.|+++..+ +...++|++
T Consensus       221 ----~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p-~~g~~~~~~  292 (349)
T PRK07908        221 ----DVLARLTRGRAHWP---VGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAVGARVVDP-AAAPFVLVR  292 (349)
T ss_pred             ----HHHHHHHhcCCCCC---ccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhCCcEeccC-CCceEEEEE
Confidence                67777765433221   2223333333222211112345667778888888999998888876653 346677887


Q ss_pred             CCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          329 LRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       329 ~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      +..    ..++.+.|+++||.+..+...   ....+.++|+++.   +    ++|++++.++|++++.
T Consensus       293 ~~~----~~~~~~~l~~~gI~v~~g~~f---~~~~~~~vRis~~---~----~~~~~~l~~al~~~~~  346 (349)
T PRK07908        293 VPD----AELLRKRLRERGIAVRRGDTF---PGLDPDYLRLAVR---P----RAEVPVLVQALAEILK  346 (349)
T ss_pred             CCc----HHHHHHHHHhCCEEEEECCCC---CCCCCCeEEEEeC---C----CccHHHHHHHHHHHHh
Confidence            652    567888999999999653211   1123568999973   3    7899999999988764

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.88  E-value=9.1e-21  Score=186.25  Aligned_cols=292  Identities=21%  Similarity=0.237  Sum_probs=190.2

Q ss_pred             HHHHHHHHHHHHHHHcC--CCCCccceeeecCCcH-HHHHHHHHHh-cCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217           64 IDELETLCQKRALAAFN--LDENKWGVNVQPLSGS-PANFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  139 (447)
Q Consensus        64 ~~~le~~~~~~~~~~~g--~~~~~~~~~v~~~sGs-~a~~~~~~al-~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g  139 (447)
                      ...+++...+++.+-.|  .+++   .+|.+++|+ +++..++..+ .++||+|++.+|.|+++..        .+...|
T Consensus        46 ~~~lr~~ia~~~~~~~~~~~~~~---~~i~~~~G~~~~~~~~~~~~~~~~~~~vlv~~P~y~~~~~--------~~~~~g  114 (363)
T PF00155_consen   46 YPELREAIADFLGRRYGVPVDPE---ANILVTSGAQAALFLLLRLLKINPGDTVLVPDPCYPSYIE--------AARLLG  114 (363)
T ss_dssp             HHHHHHHHHHHHHHHHTHHTTGG---EGEEEESHHHHHHHHHHHHHHSSTTSEEEEEESSSTHHHH--------HHHHTT
T ss_pred             hHHHHHHHHHHhhhccCcccccc---eEEEEecccccchhhhhhcccccccccceecCCccccccc--------cccccC
Confidence            45566443334433333  3332   245668998 5555566666 6799999999998876532        334555


Q ss_pred             ceeEEEecccC-CCCCCCCHHHHHHHhhhh-----CCcEEEEcCCCCCC--CCChH---HHHHHHHHhCCEEEEehhhhc
Q 013217          140 IYFESMPYRLD-ESTGLVDYDMLEKTAILF-----RPKLIIAGASAYPR--DFDYP---RMRQIADAVGALLMMDMAHIS  208 (447)
Q Consensus       140 ~~~~~~~~~~~-~~~~~id~~~l~~~~~~~-----~~klii~~~~~~~~--~~~~~---~i~~ia~~~g~~livD~a~~~  208 (447)
                      .  ++++++++ .+++.+|+++|++.+++.     ++++|+++.++||+  ..+.+   +|.++|+++|+++++|++|. 
T Consensus       115 ~--~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~-  191 (363)
T PF00155_consen  115 A--EVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYS-  191 (363)
T ss_dssp             S--EEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTT-
T ss_pred             c--eeeeccccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeeeecee-
Confidence            5  45555543 256789999999998874     46788888888886  55554   55555999999999999974 


Q ss_pred             cccccccCC----CCCC-cc-cEEEeCCCccc--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHH
Q 013217          209 GLVAASVVA----DPFK-YC-DVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAV  280 (447)
Q Consensus       209 g~~~~~~~~----~~~~-~~-Di~~~s~~K~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~  280 (447)
                      ++...+...    ..+. +. .+++.|++|.+  +|.|.|++++++      ++.+.+.....++..   +.....+++.
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i~~~~------~~~~~l~~~~~~~~~---~~~~~~~~~~  262 (363)
T PF00155_consen  192 DLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGYIVAPP------ELIERLRRFQRSGLS---SSPMQAAAAA  262 (363)
T ss_dssp             TGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGGGTEEEEEEEH------HHHHHHHHHHHHTTS---SHHHHHHHHH
T ss_pred             ccccCCCccCcccccccccccceeeeeccccccccccccccccchh------hhhhhhhhccccccc---cchhhHHHHH
Confidence            334332110    0011 22 38889999986  466779999977      777777665433322   2222223333


Q ss_pred             HHHHhcC--hhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhc-CeEEccCCCCC
Q 013217          281 CLKHAQS--PEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMA-SITLNKNSVPG  357 (447)
Q Consensus       281 al~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~-gI~v~~~~~p~  357 (447)
                      ++.....  ...++..+++.++++.+.+.|++.|+.+..+. .+++.|+.+...  +..++.+.|.+. ||.+..+..++
T Consensus       263 ~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~~--~~~~l~~~L~~~~gi~v~pg~~~~  339 (363)
T PF00155_consen  263 ALSDPELVEKWLEELRERLRENRDLLREALEEIGITVLPPE-AGFFLWVRLDPN--DAEELAQELLEEYGILVRPGSYFG  339 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEHHS-BSSEEEEEESHH--HHHHHHHHHHHHHTEEEEEGGGGT
T ss_pred             hhhcccccccccccchhhHHHHHHHHHHHHHHhhhheeecc-CccEEEEEcccc--hHHHHHHHHHHhCCEEEEecCCCC
Confidence            3333221  14577888999999999999999899887653 466667665432  456777767665 99996543332


Q ss_pred             CCCCCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217          358 DKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  391 (447)
Q Consensus       358 ~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i  391 (447)
                      .     ++++|+++ +..+    +++++++++.|
T Consensus       340 ~-----~~~iRi~~-a~~~----~e~~~~~~~~l  363 (363)
T PF00155_consen  340 V-----PGYIRISL-ASHS----EEDLEEALERL  363 (363)
T ss_dssp             S-----TTEEEEEG-GCSC----HHHHHHHHHHH
T ss_pred             C-----CCEEEEEe-ccCC----HHHHHHHHhhC
Confidence            2     66899998 5555    89999998865

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PLN02672 methionine S-methyltransferase

Probab=99.88  E-value=2.6e-20  Score=198.15  Aligned_cols=334  Identities=13%  Similarity=0.094  Sum_probs=213.2

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-   96 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-   96 (447)
                      ...|.|..++|.  +|+.+++++.+.+.+ +.  +    +++..    .+.+..++++++.+|.+.+.. -+|.+++|+ 
T Consensus       697 ~~vI~LsinE~d~ppPp~V~eAi~eal~~-~~--~----s~g~p----dlr~aLa~~la~~~Gv~~d~~-e~IIvt~Gs~  764 (1082)
T PLN02672        697 SSLIHMDVDESFLPVPSAVKASIFESFVR-QN--I----SESET----DPRPSILQFIKSNYGFPTDSC-TEFVYGDTSL  764 (1082)
T ss_pred             CCEEEEeCCCCCCCCCHHHHHHHHHHHhh-cC--C----CCCCh----HHHHHHHHHHHHHhCcCCCCC-CEEEEeCCHH
Confidence            356899999995  578999998876543 11  1    11111    123345578888889875310 134568888 


Q ss_pred             HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhhCCcEEEE
Q 013217           97 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLIIA  175 (447)
Q Consensus        97 ~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~~~klii~  175 (447)
                      +++..++.++++|||+|++++|.|+.+..        .+...|.  +++.+++++ +++.+|++++++++++.+.++|++
T Consensus       765 elL~lll~aLl~pGD~VLVp~PtY~~Y~~--------~a~~~Ga--~vv~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L  834 (1082)
T PLN02672        765 ALFNKLVLCCVQEGGTLCFPAGSNGTYVS--------AAKFLKA--NFRRIPTKSSDGFKLTAKTLASTLETVKKPWVYI  834 (1082)
T ss_pred             HHHHHHHHHHcCCCCEEEEeCCChHHHHH--------HHHHcCC--EEEEEecccccCCCCCHHHHHHHhccCCCCEEEE
Confidence            67777889999999999999998876542        3345565  555555653 467899999999986533456666


Q ss_pred             cCCC-CCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCC--CCC-------Cc-----ccEEEeCCCccc-
Q 013217          176 GASA-YPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPF-------KY-----CDVVTTTTHKSL-  234 (447)
Q Consensus       176 ~~~~-~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~--~~~-------~~-----~Di~~~s~~K~l-  234 (447)
                      +.|+ ||+  ..   .+++|.++|++||++||+|+++ .++.+.+...  .++       ..     .-+++.|++|.+ 
T Consensus       835 ~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaY-sdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~  913 (1082)
T PLN02672        835 SGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSF-SGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELL  913 (1082)
T ss_pred             ECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCC-CccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhc
Confidence            6565 776  33   4678888999999999999996 5444432110  001       00     125778999864 


Q ss_pred             -CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc--C----hhHHHHHHHHHHHHHHHHHH
Q 013217          235 -RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ--S----PEFKVYQNKVVSNCRALASR  307 (447)
Q Consensus       235 -~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~--~----~~~~~~~~~~~~~~~~l~~~  307 (447)
                       +|.|.||++++++     ++.+.+....  ...+.....+.++ ..++....  .    ...++..+.+.++++.+.+.
T Consensus       914 lpGLRIGylIap~~-----eLi~~l~~~~--~~s~~~~~~q~Aa-aaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~  985 (1082)
T PLN02672        914 SGGHEFGFLALNDS-----VLIDAFHSAP--GLSRPHSTLKYTI-KKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKET  985 (1082)
T ss_pred             cHHHHheeEEeCCH-----HHHHHHHHhh--hhcCCCcHHHHHH-HHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence             6889999999763     4777765531  1111112222222 22222111  1    12355667788999999999


Q ss_pred             HHHCCcEeeeCCCCCeeEEecCCC----------------CCCCHHHHHHHHh-hcCeEEccCCCCCCCCCCCCCeEEEe
Q 013217          308 LVELGYKLVSGGSDNHLVLVDLRP----------------MGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIG  370 (447)
Q Consensus       308 L~~~g~~~~~~~~~~~~~~v~~~~----------------~~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig  370 (447)
                      |.+.|+.+..+ ..++++|+++..                .+.+..++.+.|. +.||.++.+...+     .++++|++
T Consensus       986 L~~~Gi~v~~P-eGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG-----~~g~~RIs 1059 (1082)
T PLN02672        986 LEACGWDVLEP-QGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTG-----IPGYCRFS 1059 (1082)
T ss_pred             HHHCCCeEecC-CcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccC-----CCCeEEEE
Confidence            99989876553 456777776531                0245667777664 5799996542211     24689998


Q ss_pred             cCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          371 SPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       371 ~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      +..  +    ++++++..+.|++.+.
T Consensus      1060 fa~--~----~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672       1060 FAL--E----DSEFDRALKAIARFKE 1079 (1082)
T ss_pred             ecC--C----HHHHHHHHHHHHHHHH
Confidence            642  3    7888888888877554

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=99.88  E-value=2e-20  Score=187.65  Aligned_cols=307  Identities=16%  Similarity=0.163  Sum_probs=186.4

Q ss_pred             HHHHHHHHHHHHHHcCC---CCCccceeeecCCcH-HHHHHHHHH-----hcCCCCEEEEecCCCCcccCCCcccccccc
Q 013217           65 DELETLCQKRALAAFNL---DENKWGVNVQPLSGS-PANFEVYTA-----ILKPHDRIMGLDLPHGGHLSHGFMTPKRRV  135 (447)
Q Consensus        65 ~~le~~~~~~~~~~~g~---~~~~~~~~v~~~sGs-~a~~~~~~a-----l~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~  135 (447)
                      ...|+.+.+++.+.++.   +.++  .+|.+++|+ +|+..++.+     +++|||+|++++|.|+.+..        .+
T Consensus       132 ~~~e~iv~~y~~~~~~~~~~~~~~--~~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~--------~~  201 (521)
T TIGR03801       132 PHSEKIVHQYLIQEMCGNKPPPGE--FDLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLE--------IP  201 (521)
T ss_pred             HHHHHHHHHHHHhhccCCCCCCCc--CeEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHH--------HH
Confidence            45555555666665442   2221  145568887 888888776     78999999999998876532        22


Q ss_pred             ccccceeEEEecccCCC-C-----CCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCC---hHHHHHHHHHh--CCEEEE
Q 013217          136 SGTSIYFESMPYRLDES-T-----GLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAV--GALLMM  202 (447)
Q Consensus       136 ~~~g~~~~~~~~~~~~~-~-----~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~---~~~i~~ia~~~--g~~liv  202 (447)
                      .+.+.+.++++++.++. .     +.+|++++++++++ ++|+|+++.|+||+  ..+   +++|.++|++|  ++++|+
T Consensus       202 ~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~-~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~  280 (521)
T TIGR03801       202 ELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDP-SIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILT  280 (521)
T ss_pred             HHhcCCcEEEEeecccccccccccCCCCHHHHHHhcCC-CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEE
Confidence            33433456666666432 2     78999999998776 89999988888886  444   67888889987  999999


Q ss_pred             ehhhhccccccccCCCCC---CcccEEEeCCCccc--CCCCCceEEeecCCc---ch----hhHHHHhh-----------
Q 013217          203 DMAHISGLVAASVVADPF---KYCDVVTTTTHKSL--RGPRGGMIFFKKDPV---LG----VELESAIN-----------  259 (447)
Q Consensus       203 D~a~~~g~~~~~~~~~~~---~~~Di~~~s~~K~l--~Gp~gG~i~~~~~~~---~~----~~~~~~i~-----------  259 (447)
                      |+++. .+.. + ..+.+   +..-+++.|++|++  +|+|.|+++.+++..   ..    .+..+.+.           
T Consensus       281 DEvY~-~f~~-~-~~sl~~~~~~~vI~v~SfSK~fg~~G~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~  357 (521)
T TIGR03801       281 DDVYG-TFVD-D-FRSLFAELPYNTIGVYSFSKYFGATGWRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPR  357 (521)
T ss_pred             CCCch-hhcc-c-ccchhhhCCCCEEEEEcchhhccCchhhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChh
Confidence            99964 3332 1 11111   12348889999986  689999999876300   00    00111110           


Q ss_pred             -------------hccCCCCC--CCCcHHHHH--HHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeee-CCCC
Q 013217          260 -------------NAVFPGLQ--GGPHNHTIG--GLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVS-GGSD  321 (447)
Q Consensus       260 -------------~~~~~~~~--g~p~~~~~a--al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~  321 (447)
                                   ........  ++|...+++  ++..+++. .....++..+.+.++.+.+.+.|   |+.+.. ++..
T Consensus       358 ~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a~~all~~-~~~y~~~~~~~~~~R~~~l~~~L---g~~~~~~~~~g  433 (521)
T TIGR03801       358 KLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALMDK-ENAYKAETKDICRRREKLLFRGL---GLPLQEDPNDV  433 (521)
T ss_pred             hhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHHhc---CCCCcCCCCCe
Confidence                         00001111  233223333  33333332 11223555666777777777776   654322 2234


Q ss_pred             CeeEEecCCCCC---------------CCHHH-HHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHH
Q 013217          322 NHLVLVDLRPMG---------------IDGAR-VEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFV  385 (447)
Q Consensus       322 ~~~~~v~~~~~~---------------~~~~~-~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~  385 (447)
                      .+++++|+...+               .+..+ +.+++++.||.+    +||........++|+++...     +++++.
T Consensus       434 ~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~~~~L~~e~gV~v----~PG~~Fg~~~~~vRisla~l-----~~~~~~  504 (521)
T TIGR03801       434 AYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDVLFRLAEETGIVL----LPGGGFGGPEWSVRVSLANL-----NEYDYA  504 (521)
T ss_pred             EEEEEeehHHHHHHhcchHHHHHHhccCCHHHHHHHHHHhCCEEE----eCchhcCCCCCeEEEEecCC-----CHHHHH
Confidence            577788886321               12334 445667899998    55554211245799997422     378999


Q ss_pred             HHHHHHHHHHHHH
Q 013217          386 AIADFIHEGVEIT  398 (447)
Q Consensus       386 ~l~~~i~~~l~~~  398 (447)
                      ++.+.|.+.+..+
T Consensus       505 ~~~~rl~~~~~~~  517 (521)
T TIGR03801       505 EIGRAIRKILDEY  517 (521)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999888765

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=99.88  E-value=4.9e-20  Score=184.43  Aligned_cols=345  Identities=15%  Similarity=0.124  Sum_probs=211.0

Q ss_pred             CeeEecCCCCCC-HHHHHHHhhhhhc-----cCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC----CCCCccceeee
Q 013217           22 SLELIASENFTS-RAVMEAVGSCLTN-----KYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN----LDENKWGVNVQ   91 (447)
Q Consensus        22 ~i~l~~~~n~~~-~~v~~a~~~~~~~-----~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g----~~~~~~~~~v~   91 (447)
                      .|+|--.||.+. ..+.+.+.+...-     .+........+|.+......+.+...+.+.+.+|    ++++    +|.
T Consensus        49 ~i~l~~aeN~l~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~----~Iv  124 (447)
T PLN02607         49 VIQMGLAENQVSFDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARFDPD----RIV  124 (447)
T ss_pred             eEEEechhhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCCCCCcCHH----HeE
Confidence            489989999764 3444455443210     0000000112233333344565555567777766    3454    445


Q ss_pred             cCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccc-cccceeEEEecccCC-CCCCCCHHHHHHHhhh-
Q 013217           92 PLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVS-GTSIYFESMPYRLDE-STGLVDYDMLEKTAIL-  167 (447)
Q Consensus        92 ~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~-  167 (447)
                      +|+|+ +|+..++.+++.|||.|+++.|.|+++..        .+. ..|  .+++++++++ +++.+|++++++++++ 
T Consensus       125 it~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~--------~~~~~~g--~~vv~v~~~~~~~f~~~~~~le~a~~~a  194 (447)
T PLN02607        125 LTAGATAANELLTFILADPGDALLVPTPYYPGFDR--------DLRWRTG--VKIVPIHCDSSNNFQVTPQALEAAYQEA  194 (447)
T ss_pred             EcCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHH--------HHHhcCC--cEEEEEeCCCCCCCcCCHHHHHHHHHHH
Confidence            58887 88888889999999999999998877632        122 233  3566666654 3457999999998864 


Q ss_pred             ----hCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhcccccccc-CCCC------C-----CcccEE
Q 013217          168 ----FRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VADP------F-----KYCDVV  226 (447)
Q Consensus       168 ----~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~~~------~-----~~~Di~  226 (447)
                          .++|+|+++.|+||+  +.+   +++|.++|+++|+++|+|+++ ++.++.+. ..+.      .     +..-++
T Consensus       195 ~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiY-a~~~f~~~~f~S~~s~~~~~~~~~~~~~v~v  273 (447)
T PLN02607        195 EAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIY-SGSVFSASEFVSVAEIVEARGYKGVAERVHI  273 (447)
T ss_pred             HHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccc-cccccCCCCcccHHHHHhhcCCCCCcCcEEE
Confidence                378999998888886  444   678889999999999999995 44333221 1110      0     111267


Q ss_pred             EeCCCccc--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHh--cChhHHHHHHHHHHHHH
Q 013217          227 TTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHA--QSPEFKVYQNKVVSNCR  302 (447)
Q Consensus       227 ~~s~~K~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~--~~~~~~~~~~~~~~~~~  302 (447)
                      +.|++|.|  +|.|.|++++.++     ++...+.......   .++.....+++..+..-  ......+..+++.++.+
T Consensus       274 i~s~SK~fg~~GlRvG~ivs~n~-----~l~~~~~~~~~~~---~~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~~  345 (447)
T PLN02607        274 VYSLSKDLGLPGFRVGTIYSYND-----KVVTTARRMSSFT---LVSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYE  345 (447)
T ss_pred             EEcchhcCCCCcceEEEEEEcCH-----HHHHHHHHHhhcC---CCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH
Confidence            78999986  6788899998542     5655554432111   11222222222222210  00112345566777888


Q ss_pred             HHHHHHHHCCcEeeeCCCCCeeEEecCCCC---C-CC-HHHHH-HHHhhcCeEEccCCCCCCCCCCCCCeEEEecCcccc
Q 013217          303 ALASRLVELGYKLVSGGSDNHLVLVDLRPM---G-ID-GARVE-KILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTT  376 (447)
Q Consensus       303 ~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~---~-~~-~~~~~-~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~  376 (447)
                      .+.+.|++.|+++..+ ....++|++++..   . .+ ..++. +.++++||.+.++...   ....++.+|+++...  
T Consensus       346 ~~~~~L~~~gi~~~~~-~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f---~~~~~g~fRi~fa~~--  419 (447)
T PLN02607        346 MIVQGLRRAGIECLKG-NAGLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSC---HCSEPGWFRVCFANM--  419 (447)
T ss_pred             HHHHHHHhCCCCcccC-CeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCcccc---CCCCCCEEEEEeccC--
Confidence            8899999888876543 3467789988531   0 11 23444 4456689999643221   122367899987532  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Q 013217          377 RGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       377 ~g~~~~di~~l~~~i~~~l~~~  398 (447)
                         .++++++..+.|.+++...
T Consensus       420 ---~~~~l~~gl~Ri~~~l~~~  438 (447)
T PLN02607        420 ---SEDTLEVALKRIHRFMDRR  438 (447)
T ss_pred             ---CHHHHHHHHHHHHHHHHHH
Confidence               2788888888888888754

>PRK05968 hypothetical protein; Provisional

Probab=99.88  E-value=5.5e-21  Score=188.31  Aligned_cols=289  Identities=17%  Similarity=0.134  Sum_probs=187.6

Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217           60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  139 (447)
Q Consensus        60 g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g  139 (447)
                      +++....+|    +++++++|.+..     +.++||+.|+..++.++++|||+|++..+.|++.+....    ..+...|
T Consensus        61 ~~p~~~~le----~~lA~l~g~~~a-----v~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~----~~~~~~G  127 (389)
T PRK05968         61 DNPTVRAFE----EMLAKLEGAEDA-----RGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFE----TILKRMG  127 (389)
T ss_pred             CChhHHHHH----HHHHHHhCCCcE-----EEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHH----HHHHHcC
Confidence            345567777    578899998752     445899999999999999999999999988876532110    1122334


Q ss_pred             ceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCC
Q 013217          140 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  217 (447)
Q Consensus       140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~  217 (447)
                      .  +++.++.      .|++++++++ + +||+|++.++.++.  ..|+++|.++|+++|+++++|++|+.+...     
T Consensus       128 ~--~v~~vd~------~d~~~l~~~i-~-~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~-----  192 (389)
T PRK05968        128 V--EVDYVDG------RDEEAVAKAL-P-GAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQ-----  192 (389)
T ss_pred             c--eEEEeCC------CCHHHHHHhc-c-cCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhcc-----
Confidence            3  4444322      3889999887 4 78999998666664  579999999999999999999998665422     


Q ss_pred             CCCC-cccEEEeCCCcccCCC---CCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHH
Q 013217          218 DPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY  293 (447)
Q Consensus       218 ~~~~-~~Di~~~s~~K~l~Gp---~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~  293 (447)
                      .|+. ++|++++|+||+++||   +||+++.++      ++.+++.....+...+..+.. .+++  .++.+.  .+..+
T Consensus       193 ~p~~~g~Divv~S~tK~l~g~~~~~gG~i~~~~------~~~~~l~~~~~~~~g~~~~~~-~A~~--~l~~L~--tl~~r  261 (389)
T PRK05968        193 RPITLGVDLVIHSASKYLGGHSDTVAGVVAGSK------EHIARINAEAYPYLGAKLSPF-EAWL--LLRGLR--TLPLR  261 (389)
T ss_pred             CchhcCCcEEEeeccccccCCCCeEEEEEEECH------HHHHHHHHHHHHhCCCCCChH-HHHH--HHcccC--cHHHH
Confidence            2333 5899999999999886   458888776      666666543222221222322 2221  233333  35778


Q ss_pred             HHHHHHHHHHHHHHHHH-CCcEeee-CCCCC----------eeEEecCCCCCCCHHHHHHHHhhcCeEEccCCC-----C
Q 013217          294 QNKVVSNCRALASRLVE-LGYKLVS-GGSDN----------HLVLVDLRPMGIDGARVEKILDMASITLNKNSV-----P  356 (447)
Q Consensus       294 ~~~~~~~~~~l~~~L~~-~g~~~~~-~~~~~----------~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~-----p  356 (447)
                      +++..++++.+++.|++ +++..+. ++..+          .++.+++.. +.+..++.+.|+..++.++.+..     |
T Consensus       262 ~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~-~~~~~~f~~~L~~~~~~~s~G~~~slv~p  340 (389)
T PRK05968        262 MKAHEASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFRE-GIDVRAFADALKLFRLGVSWGGHESLVVP  340 (389)
T ss_pred             HHHHHHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEECC-HHHHHHHHHhCCccEEecCCCCCCceeee
Confidence            89999999999999988 4564443 32111          134445432 33456677777777777775421     3


Q ss_pred             CCC-------------CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          357 GDK-------------SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       357 ~~~-------------~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      ...             .....+-||+|.+..        +.+.|.+-|+++|.
T Consensus       341 ~~~~~~~~~~~~~~~~~gi~~~liR~SvGlE--------~~~dl~~dl~~al~  385 (389)
T PRK05968        341 AEVVLQQKAQPNSAARFGVSPRSVRLHVGLE--------GTEALWADLEQALA  385 (389)
T ss_pred             CcccccccCCHHHHHhcCCCCCeEEEEeccC--------CHHHHHHHHHHHHH
Confidence            211             011245699998754        44555555566555

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.88  E-value=4.3e-21  Score=189.09  Aligned_cols=291  Identities=15%  Similarity=0.134  Sum_probs=186.7

Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217           60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  139 (447)
Q Consensus        60 g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g  139 (447)
                      +++....+|    +.+++++|.+.     .+.++||+.|+.+++.++++|||+|++..+.|++.+....    ......|
T Consensus        59 ~~pt~~~Le----~~lA~l~G~~~-----al~~~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~----~~~~~~g  125 (386)
T PRK06767         59 GNPTVKLFE----ERMAVLEGGEE-----ALAFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLE----VLEEKFM  125 (386)
T ss_pred             CCcchHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHH----HHHhhcC
Confidence            445567777    58899999764     3556899999999999999999999999887776532110    0000112


Q ss_pred             ceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCC
Q 013217          140 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  217 (447)
Q Consensus       140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~  217 (447)
                        +++...      ...|++++++++++ +|++|++++++||+  ..|+++|.++|+++|+++++|++++.+...     
T Consensus       126 --i~~~~~------~~~d~~~l~~~i~~-~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~~~~-----  191 (386)
T PRK06767        126 --ITHSFC------DMETEADIENKIRP-NTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQ-----  191 (386)
T ss_pred             --eEEEEe------CCCCHHHHHHhhCc-CceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCcccccC-----
Confidence              222221      12589999999877 89999999888876  789999999999999999999998654332     


Q ss_pred             CCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHH
Q 013217          218 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY  293 (447)
Q Consensus       218 ~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~  293 (447)
                      .|+. ++|++++|++|+++|+.   ||++++++      +..+++.........+..+... ++  .+++.+.  ....+
T Consensus       192 ~pl~~g~Div~~S~sK~l~g~g~~~gG~v~~~~------~~i~~~~~~~~~~~g~~~~~~~-a~--l~~~~L~--tl~~r  260 (386)
T PRK06767        192 RPLELGCDAVVHSATKYIGGHGDVVAGVTICKT------RALAEKIRPMRKDIGGIMAPFD-AW--LLLRGLK--TLAVR  260 (386)
T ss_pred             CchhcCCcEEEecCcceecCCCCceeEEEEeCh------HHHHHHHHHHHHHhCCCCCHHH-HH--HHHcCCC--cHHHH
Confidence            2333 68999999999998765   69999887      4444332111111112222221 22  2333332  24567


Q ss_pred             HHHHHHHHHHHHHHHHH-CCcEeee-CCC---------CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCC------CC
Q 013217          294 QNKVVSNCRALASRLVE-LGYKLVS-GGS---------DNHLVLVDLRPMGIDGARVEKILDMASITLNKNS------VP  356 (447)
Q Consensus       294 ~~~~~~~~~~l~~~L~~-~g~~~~~-~~~---------~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~------~p  356 (447)
                      +++..+++..+++.|++ ++++.+. +..         .+.++.+++.....+...+.+.|+..++.++.+.      .|
T Consensus       261 ~~~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p  340 (386)
T PRK06767        261 MDRHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGVISFSIKGGKEETQAFINDLHFITIAVSLGDTETLIQHP  340 (386)
T ss_pred             HHHHHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCceEEEEEcCCHHHHHHHHHhCCccEEecCCCCcCccccCC
Confidence            88999999999999998 5776433 211         1224445553211234567777777788777642      13


Q ss_pred             CCC-----C-------CCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          357 GDK-----S-------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       357 ~~~-----~-------~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      ...     .       ...++-||+|.+        -||.+.+.+-|.+++.
T Consensus       341 ~~~~~~~~~~~~~~~~gi~~~l~R~svG--------lE~~~dl~~dl~~al~  384 (386)
T PRK06767        341 ATMTHAAIPAELRQEMGIYDNLIRLSVG--------LESWEDIVSDLEQALK  384 (386)
T ss_pred             CccccccCCHHHHHhcCCCCCeEEEEec--------cCCHHHHHHHHHHHHh
Confidence            211     0       012345888876        4566667766666654

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.88  E-value=9.3e-21  Score=186.67  Aligned_cols=225  Identities=19%  Similarity=0.176  Sum_probs=155.5

Q ss_pred             CCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccc
Q 013217           51 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT  130 (447)
Q Consensus        51 g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~  130 (447)
                      +|...||  +++....+|    +++++++|.+.     .+.++||+.|+..++.++++|||+|++..+.|++.+....  
T Consensus        50 ~~~y~r~--~~p~~~~le----~~lA~l~g~~~-----av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~--  116 (391)
T TIGR01328        50 GYIYSRL--GNPTVSNLE----GRIAFLEGTEA-----AVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLE--  116 (391)
T ss_pred             CCceeCC--CCchHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHH--
Confidence            4444443  445677887    58999999876     3456899999999999999999999999988776532110  


Q ss_pred             cccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhc
Q 013217          131 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHIS  208 (447)
Q Consensus       131 ~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~  208 (447)
                        ..+...|.  ++..++.+      |++++++++++ +|++|+++.++||.  ..|+++|.++|+++|+++++|+++..
T Consensus       117 --~~~~~~G~--~~~~vd~~------d~e~l~~~i~~-~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~  185 (391)
T TIGR01328       117 --HALTKFGI--QVDFINMA------IPEEVKAHIKD-NTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFAT  185 (391)
T ss_pred             --HHHhcCCe--EEEEECCC------CHHHHHHhhcc-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCch
Confidence              11122343  44443332      78999999877 89999998777775  77999999999999999999999876


Q ss_pred             cccccccCCCCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHH
Q 013217          209 GLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH  284 (447)
Q Consensus       209 g~~~~~~~~~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~  284 (447)
                      +...     .|+. ++|++++|++|+++|+.   ||+++.++      ++.+++.........|+......+++  +++.
T Consensus       186 ~~~~-----~~~~~g~Divv~S~sK~lgg~g~~~gG~v~~~~------~li~~l~~~~~~~~~g~~l~~~~a~l--~l~~  252 (391)
T TIGR01328       186 PMLT-----NPVALGVDVVVHSATKYIGGHGDVVAGLICGKA------ELLQQIRMVGIKDMTGSVISPFDAWL--ILRG  252 (391)
T ss_pred             hccC-----CchhcCCCEEEccccccccCCCCceEEEEEcCH------HHHHHHHHHHHHhCCCCCCCcHHHHH--HHhC
Confidence            5432     2333 68999999999998654   58887776      66665553211111122122222222  3333


Q ss_pred             hcChhHHHHHHHHHHHHHHHHHHHHH-CCcE
Q 013217          285 AQSPEFKVYQNKVVSNCRALASRLVE-LGYK  314 (447)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~  314 (447)
                      +.  .+..++++..+|++.+++.|++ +++.
T Consensus       253 L~--tl~~r~~~~~~na~~la~~L~~~p~v~  281 (391)
T TIGR01328       253 LK--TLNIRMKRHSENAMKVAEYLKSHPAVE  281 (391)
T ss_pred             cC--cHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            32  3566789999999999999988 4443

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.88  E-value=2.4e-20  Score=182.91  Aligned_cols=284  Identities=15%  Similarity=0.094  Sum_probs=185.9

Q ss_pred             HHHHHHHcCCCCCccceeeecCCcH-HHHHHHHHHhcCCC-CEEEEecCCCCcccCCCccccccccccccceeEEEeccc
Q 013217           72 QKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL  149 (447)
Q Consensus        72 ~~~~~~~~g~~~~~~~~~v~~~sGs-~a~~~~~~al~~pg-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  149 (447)
                      ++.+++++|++++    +|.+++|+ +++..++.+++++| |+|++.+|.++.+.        ......|.  +++++++
T Consensus        65 r~~ia~~~~~~~~----~I~~t~G~~~~l~~~~~~~~~~g~~~vlv~~p~y~~~~--------~~~~~~g~--~~~~v~~  130 (364)
T PRK04781         65 RSALAALYGCAPE----QLLIGRGSDEAIDLLVRALCVPGRDAVLVTPPVFGMYA--------VCARLQNA--PLVEVPL  130 (364)
T ss_pred             HHHHHHHhCcChH----HEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHH--------HHHHHcCC--EEEEEec
Confidence            3567788898875    45568887 88888999999999 79999888654331        11233454  5555555


Q ss_pred             CC--CCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHH--hCCEEEEehhhhccccccccCCCCCCc-
Q 013217          150 DE--STGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFKY-  222 (447)
Q Consensus       150 ~~--~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~--~g~~livD~a~~~g~~~~~~~~~~~~~-  222 (447)
                      +.  +++.+|++++.+.+...++++|++++++||+  ..+.+++.++++.  .++++|+|+++. .+.........++. 
T Consensus       131 ~~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~-~f~~~~~~~~~~~~~  209 (364)
T PRK04781        131 VDGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYG-EFSDVPSAVGLLARY  209 (364)
T ss_pred             CCCccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcch-hhcCCcchHHHHhhC
Confidence            32  2356899998765544489999998888886  7788888887765  378999999953 33321100000111 


Q ss_pred             -ccEEEeCCCccc--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHH
Q 013217          223 -CDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVS  299 (447)
Q Consensus       223 -~Di~~~s~~K~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~  299 (447)
                       .-+++.|++|++  +|.|.||++.++      ++.+.+.+...+..  .....+.++. .++.........+..+++.+
T Consensus       210 ~~vi~~~SfSK~~gl~GlRvGy~v~~~------~l~~~l~~~~~~~~--~~~~~~~~a~-~~l~~~~~~~~~~~~~~~~~  280 (364)
T PRK04781        210 DNLAVLRTLSKAHALAAARIGSLIANA------ELIAVLRRCQAPYP--VPTPCAALAE-QALSAPALAVTARRVAEVRA  280 (364)
T ss_pred             CCEEEEecChhhcccccceeeeeeCCH------HHHHHHHhccCCCC--CCHHHHHHHH-HHHhcccHHHHHHHHHHHHH
Confidence             237889999986  589999999987      78887776544332  1122222222 23332111123455667788


Q ss_pred             HHHHHHHHHHHC-CcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCC
Q 013217          300 NCRALASRLVEL-GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRG  378 (447)
Q Consensus       300 ~~~~l~~~L~~~-g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g  378 (447)
                      +++.+.+.|++. |+..+.+ +...++|+.+.    +..++.+.|.++||.+..+.    ..+...+++||++.   +  
T Consensus       281 ~r~~l~~~L~~~~~~~~~~p-~~g~f~~~~~~----~~~~~~~~l~~~gI~v~~~~----~~~~~~~~~Ris~~---~--  346 (364)
T PRK04781        281 ERERLHAALAQLPGVRRVYP-SQGNFLLVRFD----DAEAAFQALLAAGVVVRDQR----AAPRLSDALRITLG---T--  346 (364)
T ss_pred             HHHHHHHHHHhCCCCCeECC-CCCcEEEEEcC----CHHHHHHHHHHCCeEEeeCC----CCCCCCCeEEEeCC---C--
Confidence            888999999885 6542333 33456788764    35778888999999997542    11112468999865   3  


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 013217          379 FSEKEFVAIADFIHEGV  395 (447)
Q Consensus       379 ~~~~di~~l~~~i~~~l  395 (447)
                        +++++++.++|++..
T Consensus       347 --~~~~~~l~~al~~~~  361 (364)
T PRK04781        347 --PEQNDRVLAALQRTQ  361 (364)
T ss_pred             --HHHHHHHHHHHHHHH
Confidence              899999999997643

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=99.88  E-value=5.4e-20  Score=179.79  Aligned_cols=315  Identities=15%  Similarity=0.118  Sum_probs=204.0

Q ss_pred             CeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-HH
Q 013217           22 SLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PA   98 (447)
Q Consensus        22 ~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a   98 (447)
                      .++|..++|.  .|+.+.+++.+.+..  ..+||..      . ..++    ++.++++++++++    +|.+++|+ ++
T Consensus        21 ~~~l~~~~~~~~~p~~~~~a~~~~~~~--~~~Y~~~------~-~~~l----r~~ia~~~~~~~~----~i~it~Ga~~~   83 (354)
T PRK06358         21 ILDFSANINPLGVPESLKQAITENLDK--LVEYPDP------D-YLEL----RKRIASFEQLDLE----NVILGNGATEL   83 (354)
T ss_pred             eEEecCCCCCCCCCHHHHHHHHHHHHh--hhcCCCc------c-HHHH----HHHHHHHhCCChh----hEEECCCHHHH
Confidence            4788888775  478899998876532  2234321      1 2233    3567778898876    45568998 78


Q ss_pred             HHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-CCCCCHHHHHHHhhhhCCcEEEEcC
Q 013217           99 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGA  177 (447)
Q Consensus        99 ~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~~~~~~~klii~~~  177 (447)
                      +..++.++ .+ ++|++.+|.|+.+..        .+...|.  +++.++++.+ ++.+| +++.+.+.. ++++|+++.
T Consensus        84 l~~~~~~~-~~-~~v~i~~P~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d-~~~~~~~~~-~~~~v~~~~  149 (354)
T PRK06358         84 IFNIVKVT-KP-KKVLILAPTFAEYER--------ALKAFDA--EIEYAELTEETNFAAN-EIVLEEIKE-EIDLVFLCN  149 (354)
T ss_pred             HHHHHHHh-CC-CcEEEecCChHHHHH--------HHHHcCC--eeEEEeCccccCCCcc-HHHHHhhcc-CCCEEEEeC
Confidence            88777775 44 689999988765431        2233454  4555556533 45788 666666655 799998888


Q ss_pred             CCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC---Cc--ccEEEeCCCccc--CCCCCceEEee
Q 013217          178 SAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KY--CDVVTTTTHKSL--RGPRGGMIFFK  245 (447)
Q Consensus       178 ~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~---~~--~Di~~~s~~K~l--~Gp~gG~i~~~  245 (447)
                      |+||+  ..+   +++|.++|+++|+++++|+++ ..+...+...+++   +.  --+++.|++|++  +|.|.||++.+
T Consensus       150 P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y-~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~  228 (354)
T PRK06358        150 PNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAF-MDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTS  228 (354)
T ss_pred             CCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcc-cccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheeeecC
Confidence            88886  444   678888899999999999995 4544433211111   11  227789999986  68888999886


Q ss_pred             cCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhH-HHHHHHHHHHHHHHHHHHHHC-CcEeeeCCCCCe
Q 013217          246 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF-KVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNH  323 (447)
Q Consensus       246 ~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~  323 (447)
                      ++     .+.+.+.....+.   +.+.....+...++.   ...+ ++..+.+.++++.+.+.|.+. |+.+..+  ...
T Consensus       229 ~~-----~~~~~~~~~~~~~---~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~--~g~  295 (354)
T PRK06358        229 NK-----NLAEKLLQMREPW---SINTFADLAGQTLLD---DKEYIKKTIQWIKEEKDFLYNGLSEFKGIKVYKP--SVN  295 (354)
T ss_pred             CH-----HHHHHHHHhCCCC---cchHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCC--cce
Confidence            42     5666666543321   222222222222332   2233 666777888889999999874 7665543  234


Q ss_pred             eEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          324 LVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       324 ~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      ++|+.+.+    ..++.+.|.++||.+..+...   ....+++||++..   +    .++++++.+++.+++
T Consensus       296 f~~~~~~~----~~~~~~~l~~~gI~v~~~~~f---~~~~~~~iRls~~---~----~~~~~~l~~~l~~~~  353 (354)
T PRK06358        296 FIFFKLEK----PIDLRKELLKKGILIRSCSNY---RGLDENYYRVAVK---S----REDNKKLLKALEVIL  353 (354)
T ss_pred             EEEEEcCc----hHHHHHHHHHCCeEEEECCCC---CCCCCCEEEEEeC---C----HHHHHHHHHHHHHHh
Confidence            66777642    367888888899999654211   1223467999854   3    899999999998764

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.88  E-value=6.3e-20  Score=191.24  Aligned_cols=297  Identities=20%  Similarity=0.235  Sum_probs=194.2

Q ss_pred             HHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcC-------C-CCEEEEecCCCCcccCCCccccccccccccceeE
Q 013217           72 QKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK-------P-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE  143 (447)
Q Consensus        72 ~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~-------p-gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  143 (447)
                      ++++++++|.+.    +.+++.||+++++++++++..       + .++|+++...|+.+..        .....|  ++
T Consensus       549 q~~l~eLtGmd~----~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpa--------sa~~~G--ie  614 (954)
T PRK12566        549 EAWLCAITGFDA----ICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPA--------SAQMAG--MR  614 (954)
T ss_pred             HHHHHHHHCCCe----EeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHH--------HHHHCC--CE
Confidence            379999999997    588999999999888888642       3 3577887777766532        122334  46


Q ss_pred             EEecccCCCCCCCCHHHHHHHhhhhCCc--EEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCC
Q 013217          144 SMPYRLDESTGLVDYDMLEKTAILFRPK--LIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADP  219 (447)
Q Consensus       144 ~~~~~~~~~~~~id~~~l~~~~~~~~~k--lii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~  219 (447)
                      ++.++.| ++|.+|+++|++++++++++  +|.+..+++.+  ..++++|+++||++|+++++|++|..++...   ..|
T Consensus       615 Vv~Vp~D-~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l---~~P  690 (954)
T PRK12566        615 VVIVECD-PDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGL---ARP  690 (954)
T ss_pred             EEEeccC-CCCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCC---CCh
Confidence            6676676 47899999999999744444  45555555554  4569999999999999999999997665432   222


Q ss_pred             CC-cccEEEeCCCcccCCCCC-ceEE-----eecCCcchhhHHHHhhhcc---CCC---CCCCC----cHH-HHHHHHHH
Q 013217          220 FK-YCDVVTTTTHKSLRGPRG-GMIF-----FKKDPVLGVELESAINNAV---FPG---LQGGP----HNH-TIGGLAVC  281 (447)
Q Consensus       220 ~~-~~Di~~~s~~K~l~Gp~g-G~i~-----~~~~~~~~~~~~~~i~~~~---~~~---~~g~p----~~~-~~aal~~a  281 (447)
                      -. ++|++++++||||++|+| |..+     +++      .+...+...-   ..+   ..|+.    ... .++..+.+
T Consensus       691 g~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~------~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~A~~  764 (954)
T PRK12566        691 ADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRA------HLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASILPISWM  764 (954)
T ss_pred             hhcCCCEEEecCCcccCcCccCCCCccchhhhhh------hhhhhccCCCCcCCCCCCCCCCceeecccchHHHHHHHHH
Confidence            22 699999999999988876 4433     333      2333222210   000   01211    111 12222222


Q ss_pred             HHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCC-CC--eeEEecCCC----CCCCHHHHHHHHhhcCeEEccCC
Q 013217          282 LKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS-DN--HLVLVDLRP----MGIDGARVEKILDMASITLNKNS  354 (447)
Q Consensus       282 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~--~~~~v~~~~----~~~~~~~~~~~L~~~gI~v~~~~  354 (447)
                      +-.+...+.++.......++++++++|.+ ++.+...+. ..  |-+.+++.+    .+.+..++.++|.++||......
T Consensus       765 Yi~~lG~eLk~aa~~ailnAnYla~rL~~-~~~v~~~~~~~~~~hEfii~~~~l~~~~g~~~~dvakRL~d~Gihapt~~  843 (954)
T PRK12566        765 YIAMMGPQLADASEVAILSANYLANQLGG-AFPVLYRGRNERVAHECILDLRPLKAQTGISEEDVAKRLMDYGFHAPTMS  843 (954)
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHHHHHhHh-hCCCCcCCCCCCeeeEEEEEccccccccCCCHHHHHHHHHHCCcEEeEEe
Confidence            21122222444444557799999999977 555544321 12  445566542    24667789999989999864422


Q ss_pred             CCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 013217          355 VPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKK  403 (447)
Q Consensus       355 ~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~~~~~  403 (447)
                      .|      ..+.+|++.+.+++    ++|+|++++++..+.....+++.
T Consensus       844 fP------v~~~LmIepTE~es----keEIDrf~eAL~~I~~e~~~v~~  882 (954)
T PRK12566        844 FP------VPGTLMVEPTESES----KAELDRFVEAMLSIRAEIGKVQE  882 (954)
T ss_pred             ec------cCCEEEEEeeeeCC----HHHHHHHHHHHHHHHHHHHHHHc
Confidence            23      25689999999998    99999999999998887766543

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.88  E-value=1.8e-20  Score=173.31  Aligned_cols=319  Identities=18%  Similarity=0.154  Sum_probs=204.2

Q ss_pred             cCCCCC--CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHH
Q 013217           27 ASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYT  104 (447)
Q Consensus        27 ~~~n~~--~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~  104 (447)
                      .|.|..  .|+++++|...-.       .+..-||..++...+|    ++++++||...     .+.++|||+||..++.
T Consensus         5 ~SDn~~g~~~~m~eam~~a~~-------~~~~~YG~D~~~~~~e----~~~ae~~g~~a-----~~Fv~sGT~aN~lal~   68 (342)
T COG2008           5 RSDNVAGPTPEMREALAAANA-------VGDDVYGEDPTTNALE----QRIAELFGKEA-----ALFVPSGTQANQLALA   68 (342)
T ss_pred             ccCccCCCCHHHHHHHHhccc-------cCCCCCCCCHHHHHHH----HHHHHHhCCce-----EEEecCccHHHHHHHH
Confidence            567754  7999999975321       2233467778888888    68899999843     3445999999999999


Q ss_pred             HhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhh------CCcEEEEcC
Q 013217          105 AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILF------RPKLIIAGA  177 (447)
Q Consensus       105 al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~------~~klii~~~  177 (447)
                      +.++||+.|++....|--....+      ...+.+..   .++...+ .+|.+++|+|++.+...      +|.+++.+.
T Consensus        69 ~~~~~~~~vi~~~~aHi~~~E~G------a~~~~~~~---~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~  139 (342)
T COG2008          69 AHCQPGESVICHETAHIYTDECG------APEFFGGG---QKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENT  139 (342)
T ss_pred             HhcCCCCeEEEeccccceecccC------cHHHHcCC---ceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeec
Confidence            99999999998875553222222      23333321   2233333 57899999999977631      345666664


Q ss_pred             CCC-CCCCC---hHHHHHHHHHhCCEEEEehhhhcccc-ccccCCCCC-CcccEEEeCCCcccCCCCCceEEeecCCcch
Q 013217          178 SAY-PRDFD---YPRMRQIADAVGALLMMDMAHISGLV-AASVVADPF-KYCDVVTTTTHKSLRGPRGGMIFFKKDPVLG  251 (447)
Q Consensus       178 ~~~-~~~~~---~~~i~~ia~~~g~~livD~a~~~g~~-~~~~~~~~~-~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~  251 (447)
                      ++. ++..+   +++|.++|+++|++|+.|+|...... ..+.....+ .++|+++++++|.++.|-|++++.+.     
T Consensus       140 ~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~~gAiv~gn~-----  214 (342)
T COG2008         140 ATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAPVGAIVFGNR-----  214 (342)
T ss_pred             cCCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCHHHHHhhCCEEEEecccCCcceeeeEEEcCH-----
Confidence            443 33444   57888899999999999999754332 223111112 27999999999998888888888887     


Q ss_pred             hhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHH--HHHHHHHHHH-CCcEeeeCCCCCeeEEec
Q 013217          252 VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN--CRALASRLVE-LGYKLVSGGSDNHLVLVD  328 (447)
Q Consensus       252 ~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~--~~~l~~~L~~-~g~~~~~~~~~~~~~~v~  328 (447)
                       ++.++.+.......+   .+...--++++.....+.+. -+.....+|  ++.|++.|.+ +|+++..+ ++++.++++
T Consensus       215 -~~~~~a~~~rK~~Gg---l~~k~r~laA~~~~~l~~~~-~~~~~~Han~mA~~La~~~~~~~G~~~~~~-~~tN~vf~~  288 (342)
T COG2008         215 -DFAKRARRWRKRAGG---LMRKARFLAAQGLYALEDDV-WRLAADHANAMAARLAEGLEAKPGVKLAFP-VETNMVFVR  288 (342)
T ss_pred             -HHHHHHHHHHHHhcc---cHhhhhHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHhhhhcCCceeccC-CcccEEEEE
Confidence             677766543221111   11111112223333333332 123444566  8899999985 69999876 567777887


Q ss_pred             CCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          329 LRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       329 ~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      ++...++......++...|+.....          ...+|+-|+.-++    ++|++++++.++.++
T Consensus       289 l~~~~i~~l~~~~~~~~~~~~~~~~----------~~~vRfvts~a~~----~edv~~~~~~~~~~~  341 (342)
T COG2008         289 LPESAIEALRLAGALFYRGVLIGAH----------GEIVRFVTSWATS----EEDVDELVAAIKALL  341 (342)
T ss_pred             CChHHHHHHHhhchhheeeeeccCC----------CceEEEEeeccCC----HHHHHHHHHHHHHhh
Confidence            7643333333444445555554211          0259998887777    999999999887653

>PRK05839 hypothetical protein; Provisional

Probab=99.88  E-value=7.6e-20  Score=180.06  Aligned_cols=336  Identities=15%  Similarity=0.119  Sum_probs=203.0

Q ss_pred             HHHHHHHHHHH-hhcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--C
Q 013217            8 VCEIITKEKER-QFKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--D   82 (447)
Q Consensus         8 ~~~~~~~e~~~-~~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~   82 (447)
                      +.++....... -+..++|..+++.  .++.+.+++......  ...|+..      .....+.+...+++++.+|.  +
T Consensus        11 ~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~a~~~~~~~--~~~Y~~~------~G~~~lr~aia~~l~~~~g~~~~   82 (374)
T PRK05839         11 LRELLKEITPNKEYKGLDLTIGEPQFETPKFIQDALKNNAHL--LNKYPKS------AGEESLREAQRGFFKRRFKIELK   82 (374)
T ss_pred             HHHHHHHhhhcCCCCeEEcCCCCCCCCCCHHHHHHHHHHhhc--cCCCCCC------CCCHHHHHHHHHHHHHHhCCCCC
Confidence            34455433332 2366788777764  467788887654321  2234332      12234544555677777774  4


Q ss_pred             CCccceeeecCCcH-HHHHHHHHHhc--CCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-CCCCCH
Q 013217           83 ENKWGVNVQPLSGS-PANFEVYTAIL--KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDY  158 (447)
Q Consensus        83 ~~~~~~~v~~~sGs-~a~~~~~~al~--~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~  158 (447)
                      ++    +|.+|+|+ +++..++.+++  ++||.|++.+|.|+.+..        .+...|.  ++++++.+++ ++.+|.
T Consensus        83 ~~----~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~--------~~~~~g~--~v~~v~~~~~~~~~~d~  148 (374)
T PRK05839         83 EN----ELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEG--------AAIASRA--KVLLMPLTKENDFTPSL  148 (374)
T ss_pred             cc----eEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHH--------HHHhcCC--EEEEeecccccCCcCCc
Confidence            54    56679998 67777777764  589999999988766532        2234454  6666666533 456666


Q ss_pred             HHHHHHhhhhCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC----------cc
Q 013217          159 DMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----------YC  223 (447)
Q Consensus       159 ~~l~~~~~~~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~----------~~  223 (447)
                      ++.+  + + ++|+|+++.++||+  ..+   +++|.++|+++|+++++|+++. .+...+..++.+.          .-
T Consensus       149 ~~~~--~-~-~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~-~~~~~~~~~s~~~~~~~~~~~~~~~  223 (374)
T PRK05839        149 NEKE--L-Q-EVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYS-EIYENTPPPSLLEASILVGNESFKN  223 (374)
T ss_pred             chhh--h-c-cccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchh-hcccCCCCCCHhhhhcccCccccCc
Confidence            5442  2 3 69999999889986  444   5778888999999999999953 3332211111110          12


Q ss_pred             cEEEeCCCcc--cCCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHH
Q 013217          224 DVVTTTTHKS--LRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNC  301 (447)
Q Consensus       224 Di~~~s~~K~--l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~  301 (447)
                      -+++.|++|.  ++|.|.||++.++      ++.+++.........+.+...+.++ ..++.  .....++..+++.+++
T Consensus       224 vi~~~SfSK~~~~~GlRiG~ii~~~------~~~~~~~~~~~~~~~~~~~~~q~~~-~~~l~--~~~~~~~~~~~~~~~~  294 (374)
T PRK05839        224 VLVINSISKRSSAPGLRSGFIAGDA------SILKKYKAYRTYLGCASPLPLQKAA-AVAWL--DDEHAEFFRNIYAKNL  294 (374)
T ss_pred             EEEEeccccccCCccceeEEEecCH------HHHHHHHHHHhhcCCCCChHHHHHH-HHHhc--cchHHHHHHHHHHHHH
Confidence            2788999997  4788999999976      6777665542211123333333332 22332  1223456666777777


Q ss_pred             HHHHHHHHHCCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCC
Q 013217          302 RALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFS  380 (447)
Q Consensus       302 ~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~  380 (447)
                      +.+.+.|   |+. .  +....++|+++.    +..++.+.| +++||.+..+...+. ....++++|+++..  +    
T Consensus       295 ~~~~~~l---~~~-~--p~gg~fi~~~~~----~~~~~~~~l~~~~gi~v~pg~~f~~-~~~~~~~iRis~~~--~----  357 (374)
T PRK05839        295 KLAREIL---GIT-I--PPATFYVWLPVD----NDEEFTKKLYQNEGIKVLPGSFLGR-NGIGKGYVRIALVY--D----  357 (374)
T ss_pred             HHHHHhc---CCC-C--CCeeEEEEEeCC----ChHHHHHHHHHHCCEEEeCchhhCC-CCCCCCeEEEEecC--C----
Confidence            7666654   443 2  234667788875    245666666 569999965422211 11124789999742  3    


Q ss_pred             HHHHHHHHHHHHHHHH
Q 013217          381 EKEFVAIADFIHEGVE  396 (447)
Q Consensus       381 ~~di~~l~~~i~~~l~  396 (447)
                      ++++++..+.|.+++.
T Consensus       358 ~~~~~~~l~~l~~~l~  373 (374)
T PRK05839        358 TPKLEKALEIIKTYLE  373 (374)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            7888888888877664

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=99.87  E-value=1.4e-20  Score=184.32  Aligned_cols=213  Identities=21%  Similarity=0.191  Sum_probs=152.3

Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217           60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  139 (447)
Q Consensus        60 g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g  139 (447)
                      +++..+.+|    +.++++.|.+.     .+...||++|+.+++.+++++||+|+++++.|++.+....     . ....
T Consensus        51 ~npt~~~Le----~~lA~leg~e~-----ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~-----~-~~~~  115 (388)
T PRK08861         51 GNPNRGLLE----QTLSELESGKG-----AVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFN-----T-RANK  115 (388)
T ss_pred             CCchHHHHH----HHHHHHhCCCe-----EEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHH-----H-HHhc
Confidence            556677887    57889999653     2334666699999999999999999999988876532110     0 0111


Q ss_pred             ceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCC
Q 013217          140 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  217 (447)
Q Consensus       140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~  217 (447)
                      .++++..+  +    ..|++++++++++ +|++|+++.++||+  ..|+++|.++|+++|+++++|+++..+..     .
T Consensus       116 ~gi~v~~v--d----~~d~e~l~~~i~~-~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~-----~  183 (388)
T PRK08861        116 GDFKVQFV--D----QSDAAALDAALAK-KPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVL-----Q  183 (388)
T ss_pred             CCeEEEEE--C----CCCHHHHHHhcCc-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccccc-----C
Confidence            12454443  2    2589999999987 89999999888885  78999999999999999999999876643     2


Q ss_pred             CCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccC-CCCCCCCcHHHHHHHHHHHHHhcChhHHH
Q 013217          218 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVF-PGLQGGPHNHTIGGLAVCLKHAQSPEFKV  292 (447)
Q Consensus       218 ~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~-~~~~g~p~~~~~aal~~al~~~~~~~~~~  292 (447)
                      .|++ ++|++++|+|||++|+.   ||+++++++     ++.+++..... .|.  ..+...   .+..++.+.+  +.-
T Consensus       184 ~pl~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~-----~~~~~~~~~~~~~G~--~~~p~~---a~l~~rgl~T--l~l  251 (388)
T PRK08861        184 KPLELGADFVIHSTTKYINGHSDVIGGVLITKTK-----EHAEELAWWGNCIGA--TGTPFD---SYMTLRGIRT--LGA  251 (388)
T ss_pred             CCcccCCCEEEeecceeccCCCcceeEEEEecHH-----HHHHHHHHHHhccCC--CCChHH---HHHHHhcCCC--HHH
Confidence            3444 69999999999999875   588887664     56665553221 121  112211   2234454443  567


Q ss_pred             HHHHHHHHHHHHHHHHHHC
Q 013217          293 YQNKVVSNCRALASRLVEL  311 (447)
Q Consensus       293 ~~~~~~~~~~~l~~~L~~~  311 (447)
                      ++++..+|+..+++.|++.
T Consensus       252 R~~~~~~~a~~~a~~L~~~  270 (388)
T PRK08861        252 RMRVHEESAQQILAYLQTQ  270 (388)
T ss_pred             HHHHHHHHHHHHHHHHHhC
Confidence            8999999999999999984

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.87  E-value=8.5e-20  Score=191.50  Aligned_cols=303  Identities=20%  Similarity=0.211  Sum_probs=204.5

Q ss_pred             HHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcC--------CCCEEEEecCCCCcccCCCccccccccc
Q 013217           65 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--------PHDRIMGLDLPHGGHLSHGFMTPKRRVS  136 (447)
Q Consensus        65 ~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~--------pgd~Vl~~~~~~~~~~~~~~~~~~~~~~  136 (447)
                      -+++...+.|+++++|.+.    +.+++.+|++++.+.++++..        ..++|+++...|+.+..        ...
T Consensus       529 lq~i~elq~~l~eltGmd~----~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPa--------sa~  596 (939)
T TIGR00461       529 QELIAQLEKWLCSITGFDA----ISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPA--------SAA  596 (939)
T ss_pred             HHHHHHHHHHHHHHHCCCC----cccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHH--------HHH
Confidence            3444456689999999995    478889999888876666532        34678888877766521        123


Q ss_pred             cccceeEEEecccCCCCCCCCHHHHHHHhhh--hCCcEEEEcCCCCCC-CCC-hHHHHHHHHHhCCEEEEehhhhccccc
Q 013217          137 GTSIYFESMPYRLDESTGLVDYDMLEKTAIL--FRPKLIIAGASAYPR-DFD-YPRMRQIADAVGALLMMDMAHISGLVA  212 (447)
Q Consensus       137 ~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~--~~~klii~~~~~~~~-~~~-~~~i~~ia~~~g~~livD~a~~~g~~~  212 (447)
                      ..|  ++++.++++ ++|.+|+++|++++++  .+|++|+++.+++.+ ..| +++|+++||++|.++++|++|..++..
T Consensus       597 ~~G--~~Vv~V~~d-~~G~iDle~L~~~i~~~~~~taaV~iT~pst~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~  673 (939)
T TIGR00461       597 MAG--MQVVPVNCD-QDGNIDLVDLKNKAEQHGDELAAVMVTYPSTHGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVG  673 (939)
T ss_pred             HCC--CEEEEeccC-CCCCcCHHHHHHHHhhcCCceEEEEEEeCCcCceecccHHHHHHHHHHcCCEEEEEecChhhCCC
Confidence            444  466666666 5789999999999975  378888888665555 444 999999999999999999999665442


Q ss_pred             cccCCCCCC-cccEEEeCCCcccC-----CCCC-ceEEeecCCcchhhHHHHhhhccC---------C---CCCCC-CcH
Q 013217          213 ASVVADPFK-YCDVVTTTTHKSLR-----GPRG-GMIFFKKDPVLGVELESAINNAVF---------P---GLQGG-PHN  272 (447)
Q Consensus       213 ~~~~~~~~~-~~Di~~~s~~K~l~-----Gp~g-G~i~~~~~~~~~~~~~~~i~~~~~---------~---~~~g~-p~~  272 (447)
                      .   ..|-. ++|++++|.||+|+     |++| |++++++.      +...+.....         .   +...+ +..
T Consensus       674 l---~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~------L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g  744 (939)
T TIGR00461       674 L---TSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSH------LIPFLPKHDVVSMITGIGGSKSIGSVSAAPYG  744 (939)
T ss_pred             C---CCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhh------chhhcCCCcccccccCCCCccccccccccccC
Confidence            2   22222 69999999999987     5566 89999873      2221110000         0   00011 111


Q ss_pred             H--HHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCC---CCeeEEecCCC----CCCCHHHHHHHH
Q 013217          273 H--TIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS---DNHLVLVDLRP----MGIDGARVEKIL  343 (447)
Q Consensus       273 ~--~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~---~~~~~~v~~~~----~~~~~~~~~~~L  343 (447)
                      .  .....++.++.+..+++++..+....|+++++++|.+ +++++..+.   .-|-+++++++    .+++..++.+.|
T Consensus       745 ~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~-~~~~l~~~~~~~~~hEfv~~~~~~~~~~g~~~~dIakrL  823 (939)
T TIGR00461       745 SASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKD-HYPILFVGTLKHVAHECILDLRPLKAKTGIEAIDVAKRL  823 (939)
T ss_pred             cHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc-cCcccccCCCCceeEEEEEeccchhhhcCCCHHHHHHHH
Confidence            1  1222334556666778888899999999999999987 677766432   23556778764    246678899999


Q ss_pred             hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 013217          344 DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAK  402 (447)
Q Consensus       344 ~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~~~~  402 (447)
                      .++|+..-..+.|      ..+.+-+.....++    .+|+|++++++..+-.....+.
T Consensus       824 ~d~G~hapt~~~p------v~g~lmiepTE~es----keelD~f~~al~~I~~e~~~~~  872 (939)
T TIGR00461       824 QDYGFHAPTLSFP------VPGTLMVEPTESES----LEELDRFCDAMIAIKEEINALV  872 (939)
T ss_pred             HhCCeeccccCCc------cCCeEEEEeeccCC----HHHHHHHHHHHHHHHHHHHHhh
Confidence            9999985332222      12344444444555    9999999999988777665443

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=99.87  E-value=1.5e-19  Score=166.29  Aligned_cols=327  Identities=19%  Similarity=0.124  Sum_probs=214.8

Q ss_pred             CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC------CCccceeeecCCcH-HHHHHHH
Q 013217           31 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD------ENKWGVNVQPLSGS-PANFEVY  103 (447)
Q Consensus        31 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~------~~~~~~~v~~~sGs-~a~~~~~  103 (447)
                      .+++.+.+|+...+.+.-..||..+   .|      +. .||+.++++++-+      ++    .|..|+|. +|+..++
T Consensus        78 ~ts~~a~~Av~~al~Sgk~N~Yaps---~G------~~-~AR~AVAeYl~~~l~~kl~a~----DV~ltsGC~qAIe~~i  143 (447)
T KOG0259|consen   78 RTSQEAEQAVVDALRSGKGNGYAPS---VG------IL-PARRAVAEYLNRDLPNKLTAD----DVVLTSGCSQAIELAI  143 (447)
T ss_pred             cCCHHHHHHHHHHHhcCCCCCcCCc---cc------cH-HHHHHHHHHhhcCCCCccCcC----ceEEeccchHHHHHHH
Confidence            3578888888877766444565443   11      11 2344555653322      22    34458886 9999999


Q ss_pred             HHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC
Q 013217          104 TAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLIIAGASAYPR  182 (447)
Q Consensus       104 ~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~~~klii~~~~~~~~  182 (447)
                      .+|.+||..||++.|.++-+.+        .....+.  ++..|++=| ++|.||++.+|+++++ +|.++++..|+||.
T Consensus       144 ~~LA~p~aNILlPrPGfp~Y~~--------~a~~~~l--EVR~ydlLPe~~weIDL~~veal~DE-NT~AivviNP~NPc  212 (447)
T KOG0259|consen  144 SSLANPGANILLPRPGFPLYDT--------RAIYSGL--EVRYYDLLPEKDWEIDLDGVEALADE-NTVAIVVINPNNPC  212 (447)
T ss_pred             HHhcCCCCceecCCCCCchHHH--------hhhhcCc--eeEeecccCcccceechHHHHHhhcc-CeeEEEEeCCCCCC
Confidence            9999999999998765542211        2234444  556666544 5789999999999998 89888887777774


Q ss_pred             --CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCc----c-cEEEeCCCcc-c-CCCCCceEEeecCCcc
Q 013217          183 --DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKY----C-DVVTTTTHKS-L-RGPRGGMIFFKKDPVL  250 (447)
Q Consensus       183 --~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~----~-Di~~~s~~K~-l-~Gp~gG~i~~~~~~~~  250 (447)
                        ..   -+++|+++|+++|+.+|.|+.+ -.+++.+....|+..    + -+..+|.+|- + +|||-|||+.++....
T Consensus       213 GnVys~~HL~kiae~A~klgi~vIaDEVY-~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VPGWRlGWi~~hD~~gv  291 (447)
T KOG0259|consen  213 GNVYSEDHLKKIAETAKKLGIMVIADEVY-GHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVPGWRLGWIALHDPRGV  291 (447)
T ss_pred             cccccHHHHHHHHHHHHHhCCeEEehhhc-ceeecCCCCccchhhccccCceEeecccccccccCCceeeeEEEeccccc
Confidence              33   3689999999999999999984 555555543334331    2 2556888994 4 8999999999886421


Q ss_pred             hh--hHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEeeeCCCCCeeEEe
Q 013217          251 GV--ELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGSDNHLVLV  327 (447)
Q Consensus       251 ~~--~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~v  327 (447)
                      ..  ...+.+...  -....+|.....+|+-.-|+..-++-|.....-+..|++...+.|++ +++.....++...++|+
T Consensus       292 f~~~~~~q~~~~~--~~~~~~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~~Lk~IP~l~cp~kPeg~mylmv  369 (447)
T KOG0259|consen  292 FRDTKVVQGIKNF--LDIIPGPATIIQGALPDILEKTPEEFFDKKLSFLKSNADLCYSRLKDIPCLTCPVKPEGCMYLMV  369 (447)
T ss_pred             ccchHHHHHHHHH--HhccCCccHhHHHHhHHHHHhChHHHHHHHHHHHHhhHHHHHHHHhcCCCcccCcCCCcceEEEe
Confidence            11  111223221  12234666666777776777665555688888899999999999998 67775444445666666


Q ss_pred             cCCCC-----CCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          328 DLRPM-----GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       328 ~~~~~-----~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      .+...     +-|.+.+.++-+|..+.+    +||....+ ++++|+...      +.++.+++..+.|++...
T Consensus       370 ~l~~s~~~~~~dD~dFc~kL~~Eesv~~----LPG~af~~-~nw~Ri~i~------~~~~~leea~~Rik~Fc~  432 (447)
T KOG0259|consen  370 KLNLSLFPDIEDDVDFCQKLAREESVIC----LPGQAFGL-KNWLRIVIT------VEEEMLEEAFSRIKEFCD  432 (447)
T ss_pred             ccchhhhccccccHHHHHHHhhhcceEE----eccccccC-CCeEEEEEc------cChHHHHHHHHHHHHHHH
Confidence            54321     223445566667889988    77775332 568999753      235667777777766544

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.87  E-value=1.5e-19  Score=177.32  Aligned_cols=317  Identities=13%  Similarity=0.085  Sum_probs=203.1

Q ss_pred             cCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-H
Q 013217           21 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P   97 (447)
Q Consensus        21 ~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~   97 (447)
                      +.++|..++|+  +|+.+.+++.+.+..  ..+|+..      . ...+.    +.+++.++++++    +|.+++|+ +
T Consensus        23 ~~i~l~~~~n~~~~~~~~~~a~~~~~~~--~~~Y~~~------~-~~~Lr----~aia~~~~v~~~----~I~it~G~~~   85 (360)
T PRK07392         23 AILDFSASINPLGPPESVIAAIQSALSA--LRHYPDP------D-YRELR----LALAQHHQLPPE----WILPGNGAAE   85 (360)
T ss_pred             cEEEeCCcCCCCCCCHHHHHHHHHHHHH--hhcCCCc------C-HHHHH----HHHHHHhCcChh----hEEECCCHHH
Confidence            45888888885  468888888765543  2234432      1 12343    456667788876    45568988 7


Q ss_pred             HHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCC----CCCHHHHHHHhhhhCCcEE
Q 013217           98 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG----LVDYDMLEKTAILFRPKLI  173 (447)
Q Consensus        98 a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~id~~~l~~~~~~~~~kli  173 (447)
                      ++..++.++. +||+|++.+|.|.++..        .+...|.  ++++++++++++    ..|++++++.. . +++++
T Consensus        86 ~i~~~~~~l~-~g~~vlv~~P~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~  152 (360)
T PRK07392         86 LLTWAGRELA-QLRAVYLITPAFGDYRR--------ALRAFGA--TVKELPLPLDQPSPGLTLRLQTLPPQL-T-PNDGL  152 (360)
T ss_pred             HHHHHHHHhC-CCCeEEEECCCcHHHHH--------HHHHcCC--eEEEEecccccCCcccccCHHHHHHhc-c-CCCEE
Confidence            8887777764 78999999998776532        3344554  555555654332    25677776543 2 67899


Q ss_pred             EEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCC---Cc--ccEEEeCCCccc--CCCCCceEEe
Q 013217          174 IAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KY--CDVVTTTTHKSL--RGPRGGMIFF  244 (447)
Q Consensus       174 i~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~---~~--~Di~~~s~~K~l--~Gp~gG~i~~  244 (447)
                      +++.++||+  ..+.++|.++|+++++ +|+|+++ ..+...+..++.+   +.  .-+++.|++|++  +|.|.|++++
T Consensus       153 ~l~nP~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y-~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~  230 (360)
T PRK07392        153 LLNNPHNPTGKLWSREAILPLLEQFAL-VVVDEAF-MDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIA  230 (360)
T ss_pred             EEeCCCCCCCCCcCHHHHHHHHHHCCE-EEEECch-hhhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeC
Confidence            998889987  7788999999999985 6779985 4444332111111   11  237889999986  6889999999


Q ss_pred             ecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhH-HHHHHHHHHHHHHHHHHHHHC-CcEeeeCCCCC
Q 013217          245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF-KVYQNKVVSNCRALASRLVEL-GYKLVSGGSDN  322 (447)
Q Consensus       245 ~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~  322 (447)
                      ++      ++.+.+.....+   .+.+.....++..+++   ...+ +...+.+.++++.+.+.|++. |+.+..  ...
T Consensus       231 ~~------~~~~~~~~~~~~---~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~--~~~  296 (360)
T PRK07392        231 HP------DRLQRWQQWRDP---WPVNGLAAAAAIAALA---DRDFQQQTWAWLPPAREALFQGLASLPGLTPLP--SAA  296 (360)
T ss_pred             CH------HHHHHHHhhCCC---CCCCHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHHhCCCcEECC--CCC
Confidence            87      666666554322   1233333333333443   2234 334556777888888999874 777654  235


Q ss_pred             eeEEecCCCCCCCHHHHHHH-HhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          323 HLVLVDLRPMGIDGARVEKI-LDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       323 ~~~~v~~~~~~~~~~~~~~~-L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      .++|+++..   +..++... |+++||.+..+...   ....++++||++..       .++++++.+++.+++.
T Consensus       297 ~fl~~~~~~---~~~~l~~~ll~~~gv~v~pg~~f---~~~~~~~iRi~~~~-------~~~~~~l~~al~~~~~  358 (360)
T PRK07392        297 NFLLVQSQG---SALQLQEKLLQQHRILIRDCLSF---PELGDRYFRVAVRT-------EAENQRLLEALAAILA  358 (360)
T ss_pred             CEEEEEcCC---CHHHHHHHHHhhCCEEEEeCCCC---CCCCCCEEEEEeCC-------HHHHHHHHHHHHHHhh
Confidence            566777642   45666655 57789999654211   11234689998643       6678888888877654

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=99.87  E-value=2.2e-20  Score=165.91  Aligned_cols=327  Identities=21%  Similarity=0.218  Sum_probs=224.3

Q ss_pred             eeEecCCCCC----CHHHHHHHhhhhhccCCCCCCCCcccCchhHH-HHHHHHHHHHHHHHcCCCCCccceeeecCCcHH
Q 013217           23 LELIASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI-DELETLCQKRALAAFNLDENKWGVNVQPLSGSP   97 (447)
Q Consensus        23 i~l~~~~n~~----~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~-~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~   97 (447)
                      |......||+    .|++.++-...+. .|..|..+.|+--|.+.+ ..+|    ..++++.+-+.     .+...|+..
T Consensus        69 ilnFcaNnYLGLsshPeii~a~~~ale-eyGaGlssvrfIcGtq~iHk~LE----~kiAqfh~rED-----~ilypscfd  138 (417)
T KOG1359|consen   69 ILNFCANNYLGLSSHPEIINAGQKALE-EYGAGLSSVRFICGTQDIHKLLE----SKIAQFHGRED-----TILYPSCFD  138 (417)
T ss_pred             eeeecccccccccCChHHHHHHHHHHH-HhCCCccceeEEecchHHHHHHH----HHHHHHhCCCc-----eEEeccccc
Confidence            3334566665    5889888777664 577888888876665544 4666    57888888775     355688889


Q ss_pred             HHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhh---hhCCcEEE
Q 013217           98 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAI---LFRPKLII  174 (447)
Q Consensus        98 a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~---~~~~klii  174 (447)
                      ||..++.++++|.|.|+...+.|.+.+.        .+.+..            .-+.+|+-+++..+.   ++|-|+|+
T Consensus       139 ANag~feail~pedAvfSDeLNhASIId--------GirLck------------ry~h~dv~~l~~~l~~a~k~r~klv~  198 (417)
T KOG1359|consen  139 ANAGAFEAILTPEDAVFSDELNHASIID--------GIRLCK------------RYRHVDVFDLEHCLISACKMRLKLVV  198 (417)
T ss_pred             cchHHHHHhcChhhhhhccccccchhhh--------hhHHHh------------hhccchhHHHHHHHHHhhhheEEEEE
Confidence            9999999999999999999888877642        122221            123456666654432   23556666


Q ss_pred             Ec--CCCCCCCCChHHHHHHHHHhCCEEEEehhhhcccccccc---C--CCCCCcccEEEeCCCcccCCCCCceEEeecC
Q 013217          175 AG--ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASV---V--ADPFKYCDVVTTTTHKSLRGPRGGMIFFKKD  247 (447)
Q Consensus       175 ~~--~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~---~--~~~~~~~Di~~~s~~K~l~Gp~gG~i~~~~~  247 (447)
                      ..  .|.-+...|+++|.+++++||+++++|++|+.|+.....   .  ..-....|++.++..|.++|-.||+..+++ 
T Consensus       199 TDg~FSMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~GGyttgp~-  277 (417)
T KOG1359|consen  199 TDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGASGGYTTGPK-  277 (417)
T ss_pred             ecceeccCCCcccHHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCCCCCccCCh-
Confidence            55  233333779999999999999999999999988664321   1  111235799999999999999999999998 


Q ss_pred             CcchhhHHHHhhhccCCCCCCCCcHHHHHHH-HHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCee-E
Q 013217          248 PVLGVELESAINNAVFPGLQGGPHNHTIGGL-AVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHL-V  325 (447)
Q Consensus       248 ~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal-~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~-~  325 (447)
                           .+.+.++...-|+..++..++.+.+. +.++..+..  -.+.+++...+.+++++.++..|+.+.+.   +|. .
T Consensus       278 -----~li~llrqr~RpylFSnslppavV~~a~ka~dllm~--s~~~i~~~~a~~qrfr~~me~aGftIsg~---~hPI~  347 (417)
T KOG1359|consen  278 -----PLISLLRQRSRPYLFSNSLPPAVVGMAAKAYDLLMV--SSKEIQSRQANTQRFREFMEAAGFTISGA---SHPIC  347 (417)
T ss_pred             -----hHHHHHHhcCCceeecCCCChhhhhhhHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHhcCceecCC---CCCcc
Confidence                 68887877666666544333322222 223443332  23457788899999999999999998652   332 2


Q ss_pred             EecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          326 LVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       326 ~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      .+-+.+.. -...+.+.|.+.||.|-.-..|-  .|....+||+..++.++    +||++++++++.++.+.
T Consensus       348 pv~lGda~-lA~~~ad~lLk~Gi~Vigfs~Pv--VP~gkariRVqiSAaHt----~edid~~i~Af~~vgr~  412 (417)
T KOG1359|consen  348 PVMLGDAR-LASKMADELLKRGIYVIGFSYPV--VPKGKARIRVQISAAHT----EEDIDRLIEAFSEVGRF  412 (417)
T ss_pred             ceecccHH-HHHHHHHHHHhcCceEEeecCCc--CCCCceEEEEEEehhcC----HHHHHHHHHHHHHHHHh
Confidence            22232211 23456777788999985433332  23345689999999998    99999999999888764

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=99.87  E-value=2.7e-19  Score=177.91  Aligned_cols=334  Identities=15%  Similarity=0.129  Sum_probs=194.4

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-   96 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-   96 (447)
                      ++.++|..+++.  +++.+.+++.+.+.+....  .....|+.......+.+.+.+++.+ .+++++    +|.+|+|+ 
T Consensus        33 ~~~i~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~Y~p~~g~~~lr~aia~~~~~-~~~~~d----~I~it~Ga~  105 (402)
T TIGR03542        33 ADIIRLGIGDTTQPLPASVIEAFHNAVDELASE--ETFRGYGPEQGYPFLREAIAENDYR-GRIDPE----EIFISDGAK  105 (402)
T ss_pred             CCeEEcCCCCCCCCCCHHHHHHHHHHHhccccc--ccccCCCCCCCCHHHHHHHHHHHHh-cCCCHH----HEEECCCcH
Confidence            456888877775  5788899988776542110  0001111111223444333332211 156665    45568888 


Q ss_pred             HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccc---------eeEEEecccCCC-CCCCCHHHHHHHhh
Q 013217           97 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI---------YFESMPYRLDES-TGLVDYDMLEKTAI  166 (447)
Q Consensus        97 ~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~---------~~~~~~~~~~~~-~~~id~~~l~~~~~  166 (447)
                      +++.. +..++.+||+|++.+|.|.++..        .+...|.         +.++++++.+++ ++.+|+++      
T Consensus       106 ~al~~-l~~l~~~gd~Vlv~~P~y~~~~~--------~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------  170 (402)
T TIGR03542       106 CDVFR-LQSLFGSDNTVAVQDPVYPAYVD--------SNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPE------  170 (402)
T ss_pred             HHHHH-HHHhcCCCCEEEEeCCCCcchHH--------HHHHcCCccccccccccceEEEeecchhhCCCCCccc------
Confidence            66665 46677899999999998876532        1223332         014445555432 34445321      


Q ss_pred             hhCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC---Cc---ccEEEeCCCccc-
Q 013217          167 LFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KY---CDVVTTTTHKSL-  234 (447)
Q Consensus       167 ~~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~---~~---~Di~~~s~~K~l-  234 (447)
                      ..++++|+++.++||+  ..+   +++|.++|+++|+++|+|+++ ..+...+..+.++   +.   .-+++.|++|.+ 
T Consensus       171 ~~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y-~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g  249 (402)
T TIGR03542       171 EPKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAY-SAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAG  249 (402)
T ss_pred             cCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchh-hhhccCCCCCcchhhCCCCcccEEEEecCccccC
Confidence            1378999998888886  455   688999999999999999996 3444332212221   11   236789999987 


Q ss_pred             -CCCCCceEEeecCCcchhhHH--------HHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHH
Q 013217          235 -RGPRGGMIFFKKDPVLGVELE--------SAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA  305 (447)
Q Consensus       235 -~Gp~gG~i~~~~~~~~~~~~~--------~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~  305 (447)
                       +|.|.|++++++      ++.        ..+........ .+++.....+...++..-......+..+.+.++++.+.
T Consensus       250 ~pGlRiG~~i~~~------~l~~~~~~~~~~~~~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  322 (402)
T TIGR03542       250 FTGVRLGWTVVPK------ELTYADGHSVIQDWERRQCTKF-NGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILR  322 (402)
T ss_pred             CCCcceEEEEecH------HHhhcchhhHHHHHHHHhhhcc-cCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHH
Confidence             678889999987      443        22211111111 12232222222223322111123445566778888899


Q ss_pred             HHHHHCCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHH
Q 013217          306 SRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEF  384 (447)
Q Consensus       306 ~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di  384 (447)
                      +.|++.|+++..+ ....++|+.+.. .++..++.+.| ++.||.+..+...   .....+++||+..  .+    ++++
T Consensus       323 ~~L~~~~~~~~~~-~~~~f~~v~l~~-~~~~~~l~~~l~~~~gv~v~pg~~f---~~~~~~~iRis~~--~~----~~~l  391 (402)
T TIGR03542       323 KALEAAGFKVYGG-EHAPYLWVKTPE-GISSWDFFDFLLYQYHVVGTPGSGF---GPSGEGFVRFSAF--GK----RENI  391 (402)
T ss_pred             HHHHhcCceecCC-CceeEEEEECCC-CCCHHHHHHHHHHhCCEEEeCchhh---CCCCCCEEEEEec--CC----HHHH
Confidence            9998888776543 346677888754 45666666655 5789999654221   1112468999842  23    7888


Q ss_pred             HHHHHHHHHH
Q 013217          385 VAIADFIHEG  394 (447)
Q Consensus       385 ~~l~~~i~~~  394 (447)
                      ++..+.|+++
T Consensus       392 ~~~l~~l~~~  401 (402)
T TIGR03542       392 VEACERIKEA  401 (402)
T ss_pred             HHHHHHHHhh
Confidence            8887777654

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.87  E-value=1.4e-20  Score=185.77  Aligned_cols=224  Identities=21%  Similarity=0.222  Sum_probs=151.9

Q ss_pred             CCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccc
Q 013217           51 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT  130 (447)
Q Consensus        51 g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~  130 (447)
                      +|...||  +++....+|    +++++++|+++.    . .++||+.|+..++.++++|||+|+++++.|+++.....  
T Consensus        56 ~~~y~r~--~~p~~~~Le----~~lA~l~G~~~~----~-~~~sG~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~--  122 (398)
T PRK07504         56 GFIYSRY--SNPTVDMFE----KRMCALEGAEDA----R-ATASGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVE--  122 (398)
T ss_pred             CceeecC--CCchHHHHH----HHHHHHhCCCee----e-EecCHHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHH--
Confidence            4444443  345566777    578899999863    2 25799999988888899999999999988877532110  


Q ss_pred             cccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhc
Q 013217          131 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHIS  208 (447)
Q Consensus       131 ~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~  208 (447)
                        ......|  +++..+  +    .+|++++++++++ +||+|++++++||+  ..|+++|.++|+++|+++++|++|+.
T Consensus       123 --~~~~~~G--~~v~~v--d----~~d~e~l~~ai~~-~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~  191 (398)
T PRK07504        123 --TLLPRYG--IESTLV--D----GLDLDNWEKAVRP-NTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFAT  191 (398)
T ss_pred             --HHHhhcC--eEEEEE--C----CCCHHHHHHhcCc-CceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCccc
Confidence              0011223  344443  2    3799999999987 89999999888875  78999999999999999999999876


Q ss_pred             cccccccCCCCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHH
Q 013217          209 GLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH  284 (447)
Q Consensus       209 g~~~~~~~~~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~  284 (447)
                      +..     ..++. ++|++++|+||+++|+.   ||+++++++     .+.+++......  .|.......++  .+++.
T Consensus       192 ~~~-----~~~~~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~-----~i~~~~~~~~~~--~g~~~s~~~A~--~~l~~  257 (398)
T PRK07504        192 PLF-----QKPLELGAHIVVYSATKHIDGQGRCLGGVVLSDKA-----WIEEHLQDYFRH--TGPSLSPFNAW--TLLKG  257 (398)
T ss_pred             ccc-----CCchhhCCCEEEeeccccccCCccceEEEEEeCcH-----HHHHHHHHHHHH--hCCCCCHHHHH--HHHhc
Confidence            643     23333 58999999999997643   477777763     232333321111  12111122222  23343


Q ss_pred             hcChhHHHHHHHHHHHHHHHHHHHHH-CCcE
Q 013217          285 AQSPEFKVYQNKVVSNCRALASRLVE-LGYK  314 (447)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~  314 (447)
                      +.  .+..++++..+|+..+.+.|++ +++.
T Consensus       258 L~--tl~~R~~~~~~na~~la~~L~~~p~v~  286 (398)
T PRK07504        258 LE--TLPVRVRQQTESAAAIADFLAGHPKVA  286 (398)
T ss_pred             cc--hHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence            33  3567888999999999999987 3443

>PRK04311 selenocysteine synthase; Provisional

Probab=99.87  E-value=1.5e-19  Score=179.84  Aligned_cols=322  Identities=17%  Similarity=0.172  Sum_probs=198.2

Q ss_pred             CCCCCCHHHHHHHhhhhhccCCC-CCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh
Q 013217           28 SENFTSRAVMEAVGSCLTNKYSE-GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI  106 (447)
Q Consensus        28 ~~n~~~~~v~~a~~~~~~~~~~~-g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al  106 (447)
                      +-+++|+++++++..++.+ |.. .|.......| +..+.+|    +.+++++|++..     +.++||+.|+..++.+ 
T Consensus        94 g~s~l~~~v~eav~~~~~~-~~~le~~l~~g~~g-~r~~~~e----~~lA~l~Gae~a-----~vv~sgtaAl~l~l~~-  161 (464)
T PRK04311         94 GRALLSEAAIEAVTEAARG-YSNLEYDLATGKRG-SRDRALA----ALLCALTGAEDA-----LVVNNNAAAVLLALNA-  161 (464)
T ss_pred             CCCCCCHHHHHHHHHHHhc-ccccccchhhcccc-hHHHHHH----HHHHHHhCCCeE-----EEECCHHHHHHHHHHH-
Confidence            3446799999999887764 321 1100000011 2233444    689999999852     3458898998877755 


Q ss_pred             cCCCCEEEEecCCCC---cccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCC--
Q 013217          107 LKPHDRIMGLDLPHG---GHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--  181 (447)
Q Consensus       107 ~~pgd~Vl~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~--  181 (447)
                      +.+||+|++++.++.   +.+...     ..+...|.  +++.++.+   +..+++++++++++ +|++|++.+++|+  
T Consensus       162 l~~GdeVIvs~~e~~~~ggs~~i~-----~~~~~~G~--~l~~v~~~---~~t~~~dle~aI~~-~TklV~~vh~sN~~i  230 (464)
T PRK04311        162 LAAGKEVIVSRGELVEIGGAFRIP-----DVMRQAGA--RLVEVGTT---NRTHLRDYEQAINE-NTALLLKVHTSNYRI  230 (464)
T ss_pred             hCCCCEEEEcchhhhhcCcchhhH-----HHHHHCCc--EEEEECCC---CCCCHHHHHHhcCc-cCeEEEEEcCCCccc
Confidence            589999999876543   221110     11233453  55554443   34689999999987 8999888754442  


Q ss_pred             ----CCCChHHHHHHHHHhCCEEEEehhhhcccccc----c--cCC---CCCC-cccEEEeCCCcccCCCCCceEEeecC
Q 013217          182 ----RDFDYPRMRQIADAVGALLMMDMAHISGLVAA----S--VVA---DPFK-YCDVVTTTTHKSLRGPRGGMIFFKKD  247 (447)
Q Consensus       182 ----~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~----~--~~~---~~~~-~~Di~~~s~~K~l~Gp~gG~i~~~~~  247 (447)
                          ...|+++|+++|++||+++++|.+  +|.+..    +  ..+   .++. ++|++++|+||+|+||.+|++++++ 
T Consensus       231 ~G~~~~~dl~eI~~lak~~gi~vivD~g--sG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp~~G~i~g~~-  307 (464)
T PRK04311        231 EGFTKEVSLAELAALGKEHGLPVVYDLG--SGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGPQAGIIVGKK-  307 (464)
T ss_pred             cccCCcCCHHHHHHHHHHcCCeEEEECC--CcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCCceEEEEEcH-
Confidence                257999999999999999999985  333210    0  011   2222 6999999999999999999999987 


Q ss_pred             CcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChh-----------HHHHHHHHHHHHHHHHHHHHHC---Cc
Q 013217          248 PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPE-----------FKVYQNKVVSNCRALASRLVEL---GY  313 (447)
Q Consensus       248 ~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~-----------~~~~~~~~~~~~~~l~~~L~~~---g~  313 (447)
                           ++.+++.+....-.. ...-..++++...+.....+.           +....+++.+++..+++.|.+.   ++
T Consensus       308 -----~li~~l~~~~~~r~l-r~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~  381 (464)
T PRK04311        308 -----ELIARLKKHPLKRAL-RVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGAAF  381 (464)
T ss_pred             -----HHHHHHhhchhHHHH-hcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCCCe
Confidence                 676666531100000 001223555555555332211           1223477888999999999873   22


Q ss_pred             --Eeee------CCCC--C--eeEEecCCCCCCCHHHHHHHHhhcC--eEEccCCCCCCCCCCCCCeEEEecCccccCCC
Q 013217          314 --KLVS------GGSD--N--HLVLVDLRPMGIDGARVEKILDMAS--ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGF  379 (447)
Q Consensus       314 --~~~~------~~~~--~--~~~~v~~~~~~~~~~~~~~~L~~~g--I~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~  379 (447)
                        ++..      +|+.  .  .-..+.+.+.+.+..++.+.|++..  |..+.          ..+.+.+     .-|.+
T Consensus       382 ~~~~~~~~~~~gggs~p~~~~~~~~v~~~~~~~~~~~l~~~lr~~~~~i~~r~----------~~~~~~l-----d~r~~  446 (464)
T PRK04311        382 AVEVVPSFSQVGGGSLPVDRLPSAAVTLTPKDRSLEALAARLRLLPPPVIGRI----------EDGRLLL-----DLRTL  446 (464)
T ss_pred             eEEEEEccCccCCCCCcCCCCCeEEEEEeCCCCCHHHHHHHHhcCCCCEEEEE----------ECCEEEE-----EeCcC
Confidence              3432      1211  1  1223445555677889999998744  54431          1223443     33566


Q ss_pred             CHHHHHHHHHHHHHHHH
Q 013217          380 SEKEFVAIADFIHEGVE  396 (447)
Q Consensus       380 ~~~di~~l~~~i~~~l~  396 (447)
                      .++|++.+++.+.+++.
T Consensus       447 ~~~~~~~~~~~~~~~~~  463 (464)
T PRK04311        447 EEEDEERLAAALLEALN  463 (464)
T ss_pred             CHHHHHHHHHHHHHHhh
Confidence            79999999999988753

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.87  E-value=3.8e-20  Score=182.29  Aligned_cols=216  Identities=24%  Similarity=0.243  Sum_probs=151.8

Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217           60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  139 (447)
Q Consensus        60 g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g  139 (447)
                      +++....+|    +.+++++|.+..     +.++||++|+.+++.++++|||+|++.++.|++.+....    ......|
T Consensus        59 ~~p~~~~Le----~~lA~~~g~~~~-----i~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~----~~~~~~g  125 (388)
T PRK07811         59 GNPTRTALE----EQLAALEGGAYG-----RAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLID----KVFTRWG  125 (388)
T ss_pred             CCccHHHHH----HHHHHHhCCCce-----EEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHH----HhCcCCC
Confidence            334566776    678899998863     335889999999999999999999999998876532110    0111122


Q ss_pred             ceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCC
Q 013217          140 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  217 (447)
Q Consensus       140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~  217 (447)
                        +++..++      ..|++++++++++ +||+|+++.++||+  ..|+++|.++|+++|+++++|++++.+..     .
T Consensus       126 --i~~~~~d------~~d~e~l~~~i~~-~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~-----~  191 (388)
T PRK07811        126 --VEYTPVD------LSDLDAVRAAITP-RTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYL-----Q  191 (388)
T ss_pred             --eEEEEeC------CCCHHHHHHhcCc-CCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCcccc-----C
Confidence              2333322      2589999999987 89999998888875  78999999999999999999999866543     2


Q ss_pred             CCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccCC-CCCCCCcHHHHHHHHHHHHHhcChhHHH
Q 013217          218 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFP-GLQGGPHNHTIGGLAVCLKHAQSPEFKV  292 (447)
Q Consensus       218 ~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~~-~~~g~p~~~~~aal~~al~~~~~~~~~~  292 (447)
                      .|+. ++|++++|++|+++||.   ||+++++++     ++.+++...... +.  .....  .+ +.+++.+.  .+..
T Consensus       192 ~p~~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~-----~l~~~~~~~~~~~g~--~~s~~--~a-~l~~~~L~--tl~~  259 (388)
T PRK07811        192 QPLALGADVVVHSTTKYIGGHSDVVGGALVTNDE-----ELDEAFAFLQNGAGA--VPGPF--DA-YLTLRGLK--TLAV  259 (388)
T ss_pred             CchhhCCcEEEecCceeecCCCCcEEEEEEECCH-----HHHHHHHHHHHhcCC--CCCHH--HH-HHHHhccC--cHHH
Confidence            2333 68999999999998874   688888764     666655432211 11  11111  11 23344333  3567


Q ss_pred             HHHHHHHHHHHHHHHHHH-CCcE
Q 013217          293 YQNKVVSNCRALASRLVE-LGYK  314 (447)
Q Consensus       293 ~~~~~~~~~~~l~~~L~~-~g~~  314 (447)
                      ++++..+|+..+++.|++ +++.
T Consensus       260 R~~~~~~na~~la~~L~~~p~v~  282 (388)
T PRK07811        260 RMDRHSENAEAVAEFLAGHPEVS  282 (388)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCee
Confidence            788899999999999988 4443

>PLN02880 tyrosine decarboxylase

Probab=99.86  E-value=9.5e-20  Score=183.56  Aligned_cols=314  Identities=15%  Similarity=0.115  Sum_probs=194.4

Q ss_pred             hHHHHHHHHHHHHHHHHcCCCCCcc----ceeeecCCcHHHHHHHHHHhcC-----C-----CC-EEEEecCCCCcccCC
Q 013217           62 EYIDELETLCQKRALAAFNLDENKW----GVNVQPLSGSPANFEVYTAILK-----P-----HD-RIMGLDLPHGGHLSH  126 (447)
Q Consensus        62 ~~~~~le~~~~~~~~~~~g~~~~~~----~~~v~~~sGs~a~~~~~~al~~-----p-----gd-~Vl~~~~~~~~~~~~  126 (447)
                      +...++|+.+.+|+++++|.+...+    +.-+.+++||+||+.++.+-..     .     .. .|++.+-.   |++.
T Consensus       118 p~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~a---H~Sv  194 (490)
T PLN02880        118 PAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQT---HSAL  194 (490)
T ss_pred             cccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCc---hHHH
Confidence            3466899999999999999986421    1123345667898877654321     1     12 23334333   3322


Q ss_pred             Ccccccccccccccee-EEEecccCC-CCCCCCHHHHHHHhhhh-----CCcEEEEc-CC-CCCCCCChHHHHHHHHHhC
Q 013217          127 GFMTPKRRVSGTSIYF-ESMPYRLDE-STGLVDYDMLEKTAILF-----RPKLIIAG-AS-AYPRDFDYPRMRQIADAVG  197 (447)
Q Consensus       127 ~~~~~~~~~~~~g~~~-~~~~~~~~~-~~~~id~~~l~~~~~~~-----~~klii~~-~~-~~~~~~~~~~i~~ia~~~g  197 (447)
                      .     +.+.+.|.+. .++.+++|. +++.+|+++|++.+.+.     .|-+|+.+ .+ +.+...|+++|+++|+++|
T Consensus       195 ~-----Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~  269 (490)
T PLN02880        195 Q-----KACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNG  269 (490)
T ss_pred             H-----HHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcC
Confidence            1     3455666542 233444653 35789999999998653     25566665 23 3333789999999999999


Q ss_pred             CEEEEehhhhccccccccCC---CCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhc---cCC------
Q 013217          198 ALLMMDMAHISGLVAASVVA---DPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNA---VFP------  264 (447)
Q Consensus       198 ~~livD~a~~~g~~~~~~~~---~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~---~~~------  264 (447)
                      +|++||+||+.++...+.+.   ..+..+|.++.++|||+..|.+ |++++++..    .+.+.+...   ...      
T Consensus       270 iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~----~l~~~~~~~~~Yl~~~~~~~~  345 (490)
T PLN02880        270 MWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRN----ALIQSLSTNPEFLKNKASQAN  345 (490)
T ss_pred             CEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCHH----HHHHHHccCHHHhcCcccccc
Confidence            99999999876654332211   1233689999999999999999 999998631    111111100   000      


Q ss_pred             --------CCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEeeeCCCCCeeEEecCCCCCCC
Q 013217          265 --------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGSDNHLVLVDLRPMGID  335 (447)
Q Consensus       265 --------~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~v~~~~~~~~  335 (447)
                              ..+.+-. ..-..++.+++....+++.+++++..+.++++.+.|.+ .+++++.+. ...++.+.+.+...+
T Consensus       346 ~~~~~~~~~i~~~rr-~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~-~~~iv~Fr~~~~~~~  423 (490)
T PLN02880        346 SVVDYKDWQIPLGRR-FRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPR-IFSLVCFRLVPPKNN  423 (490)
T ss_pred             CCCChhccCcCCCCc-ccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC-ceEEEEEEEeCCCCC
Confidence                    0001111 11234566777777778888888888999999999977 689988753 233444444433222


Q ss_pred             H-------HHHHHHHhh-cCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          336 G-------ARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       336 ~-------~~~~~~L~~-~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      .       .++.+.|.+ ..+.+....+.+      ...+|+++....|   +++|++.+.+.|.+.....
T Consensus       424 ~~~~~~~n~~l~~~l~~~g~~~v~~t~~~g------~~~lR~~~~n~~t---t~~di~~~~~~i~~~~~~~  485 (490)
T PLN02880        424 EDNGNKLNHDLLDAVNSSGKIFISHTVLSG------KYVLRFAVGAPLT---EERHVTAAWKVLQDEASKL  485 (490)
T ss_pred             hhhHHHHHHHHHHHHHhCCCEEEEEEEECC------EEEEEEEecCCCC---CHHHHHHHHHHHHHHHHHH
Confidence            1       234444443 455554322221      3479998776555   4899999999998876543

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.86  E-value=5e-20  Score=181.58  Aligned_cols=246  Identities=23%  Similarity=0.233  Sum_probs=162.9

Q ss_pred             ecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHH
Q 013217           26 IASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA  105 (447)
Q Consensus        26 ~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~a  105 (447)
                      ..+..+..+.+.+++..+...  ..+|+..|+  +++..+.+|    +++++++|.+.     .+.++||++|+..++.+
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~--~~~~~y~r~--~~p~~~~le----~~la~l~g~~~-----~v~~ssG~~Ai~~al~a   95 (390)
T PRK08133         29 FLTSSFVFESAAEAAARFAGE--EPGNIYSRF--TNPTVTMFQ----ERLAALEGAEA-----CVATASGMAAILAVVMA   95 (390)
T ss_pred             cCCCCcccCCHHHHHHhhcCC--cCCceeECC--CChHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHH
Confidence            344455556666665543322  124554554  345566666    67889999875     24458888999999999


Q ss_pred             hcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--C
Q 013217          106 ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--D  183 (447)
Q Consensus       106 l~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~  183 (447)
                      +++|||+|++.++.|++.+....    ..+...|.  +++.+++      .|++++++++++ +||+|+++.++||+  .
T Consensus        96 l~~~Gd~Vi~~~~~y~~t~~~~~----~~~~~~G~--~v~~vd~------~d~~~l~~~i~~-~tklV~ie~p~NptG~v  162 (390)
T PRK08133         96 LLQAGDHVVSSRSLFGSTVSLFE----KIFARFGI--ETTFVDL------TDLDAWRAAVRP-NTKLFFLETPSNPLTEL  162 (390)
T ss_pred             HhCCCCEEEEccCcchhHHHHHH----HHHHHcCc--EEEEECC------CCHHHHHHhcCc-CCeEEEEECCCCCCCCc
Confidence            99999999999988877542110    11122343  5555433      278999999987 89999998777775  7


Q ss_pred             CChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhh
Q 013217          184 FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAIN  259 (447)
Q Consensus       184 ~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~  259 (447)
                      .|+++|.++|+++|+++++|+++..+..     ..|+. ++|++++|+||+++|+.   ||+++.++      ++.+++.
T Consensus       163 ~dl~~I~~la~~~gi~livD~t~~~~~~-----~~pl~~g~Divv~S~sK~~~g~g~~~GG~vv~~~------~~~~~~~  231 (390)
T PRK08133        163 ADIAALAEIAHAAGALLVVDNCFCTPAL-----QQPLKLGADVVIHSATKYLDGQGRVLGGAVVGSK------ELMEEVF  231 (390)
T ss_pred             CCHHHHHHHHHHcCCEEEEECCCccccc-----CCchhhCCcEEEeecceeecCCcceEeEEEEcCH------HHHHHHH
Confidence            8999999999999999999999765533     22333 58999999999997642   47888776      4444443


Q ss_pred             hccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcE
Q 013217          260 NAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYK  314 (447)
Q Consensus       260 ~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~  314 (447)
                      ...... ...+..  .. .+.+++.+.  .+..+++++.+|+..+++.|++ +++.
T Consensus       232 ~~~~~~-g~~~~~--~~-a~~~l~gl~--tl~~R~~~~~~~a~~la~~L~~~p~v~  281 (390)
T PRK08133        232 GFLRTA-GPTLSP--FN-AWVFLKGLE--TLSLRMEAHSANALALAEWLEAHPGVE  281 (390)
T ss_pred             HHHHHh-CCCCCH--HH-HHHHHcccc--hHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence            221111 111121  11 122333332  4677888999999999999988 3554

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.86  E-value=6.8e-20  Score=180.92  Aligned_cols=213  Identities=22%  Similarity=0.193  Sum_probs=149.8

Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217           60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  139 (447)
Q Consensus        60 g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g  139 (447)
                      +++..+.+|    ++++++.|.+.     .+.++||++|+.+++.++++|||+|++..+.|++......    ......|
T Consensus        58 ~~p~~~~Le----~~lA~l~g~~~-----~v~~~sG~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~----~~~~~~g  124 (405)
T PRK08776         58 GNPTRDLLG----EALAELEGGAG-----GVITATGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLFN----ALAKKGH  124 (405)
T ss_pred             CChHHHHHH----HHHHHHhCCCc-----eEEEcCHHHHHHHHHHHHhCCCCEEEEccCCchHHHHHHH----HHHHhcC
Confidence            445556676    57888999754     3556889999999999999999999999888876421100    0011122


Q ss_pred             ceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCC
Q 013217          140 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  217 (447)
Q Consensus       140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~  217 (447)
                        .+++.++      ..|++++++++++ +||+|+++.++||+  ..|+++|.++|+++|+++++|++|..+..     .
T Consensus       125 --~~v~~v~------~~d~~~l~~~i~~-~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~~-----~  190 (405)
T PRK08776        125 --FALITAD------LTDPRSLADALAQ-SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPAL-----Q  190 (405)
T ss_pred             --cEEEEEC------CCCHHHHHHhcCc-CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCccccc-----C
Confidence              3444432      2489999999876 89999998888875  78999999999999999999999865532     2


Q ss_pred             CCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccC-CCCCCCCcHHHHHHHHHHHHHhcChhHHH
Q 013217          218 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVF-PGLQGGPHNHTIGGLAVCLKHAQSPEFKV  292 (447)
Q Consensus       218 ~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~-~~~~g~p~~~~~aal~~al~~~~~~~~~~  292 (447)
                      .|+. ++|++++|+||+++|+.   ||+++++++     ++.+++..... .+.  .++.....   ..++.+  ..++.
T Consensus       191 ~pl~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~-----~l~~~l~~~~~~~g~--~~s~~~a~---l~~~gl--~tl~~  258 (405)
T PRK08776        191 KPLEFGADLVLHSTTKYINGHSDVVGGAVVARDA-----ELHQQLVWWANALGL--TGSPFDAF---LTLRGL--RTLDA  258 (405)
T ss_pred             CcccccCCEEEecCceeecCCCCceEEEEEeCCH-----HHHHHHHHHHHhcCC--CCCHHHHH---HHHhhh--CcHHH
Confidence            3444 68999999999998875   588877654     66666643221 121  12222221   222332  24677


Q ss_pred             HHHHHHHHHHHHHHHHHHC
Q 013217          293 YQNKVVSNCRALASRLVEL  311 (447)
Q Consensus       293 ~~~~~~~~~~~l~~~L~~~  311 (447)
                      +++++.+|+..+++.|++.
T Consensus       259 r~~~~~~na~~la~~L~~~  277 (405)
T PRK08776        259 RLRVHQENADAIAALLDGH  277 (405)
T ss_pred             HHHHHHHHHHHHHHHHHcC
Confidence            8999999999999999873

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=99.86  E-value=6.5e-20  Score=179.99  Aligned_cols=288  Identities=19%  Similarity=0.172  Sum_probs=186.9

Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217           60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  139 (447)
Q Consensus        60 g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g  139 (447)
                      +++..+.+|    +++++++|.+.     .+.++||+.|+.+++. +++|||+|++.++.|++......    ..+...|
T Consensus        45 ~~p~~~~le----~~la~l~g~~~-----~l~~~sG~~al~~~l~-ll~~Gd~Vl~~~~~y~~~~~~~~----~~~~~~G  110 (378)
T TIGR01329        45 GNPTRTALE----SLLAKLDKADR-----AFAFSSGMAALDVITR-LLNNGDEIIAGDDLYGGTDRLLT----QVVPRSG  110 (378)
T ss_pred             CChHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHH-HhCCCCEEEEcCCCchHHHHHHH----HHHHHcC
Confidence            455567777    68889999854     3445888888876665 78999999999988876532110    0111234


Q ss_pred             ceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCC
Q 013217          140 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  217 (447)
Q Consensus       140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~  217 (447)
                      .  +++.++.      .|++++++++++ +||+|++++++|+.  ..|+++|+++|+++|+++++|++|+.+..     .
T Consensus       111 ~--~v~~vd~------~d~~~le~~i~~-~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~-----~  176 (378)
T TIGR01329       111 V--VVVHVDT------TDLDKVKAALGP-KTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLL-----C  176 (378)
T ss_pred             c--EEEEeCC------CCHHHHHHhcCc-CceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCccccc-----C
Confidence            3  4444332      389999999986 89999999777775  77999999999999999999999866643     2


Q ss_pred             CCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccC-CCCCCCCcHHHHHHHHHHHHHhcChhHHH
Q 013217          218 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVF-PGLQGGPHNHTIGGLAVCLKHAQSPEFKV  292 (447)
Q Consensus       218 ~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~-~~~~g~p~~~~~aal~~al~~~~~~~~~~  292 (447)
                      .|+. ++|++++|+||+++||.   +|+++++++     ++.+++..... .+..  .+. .-+  +..++.+  ..+..
T Consensus       177 ~~l~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~-----~~~~~~~~~~~~~G~~--~~~-~~a--~l~~~~l--~tl~~  244 (378)
T TIGR01329       177 NPLELGADIVYHSATKFLAGHSDVMAGVLAVKGE-----EIAKKVYFLQNSTGSG--LAP-FDC--WLLLRGI--KTLAI  244 (378)
T ss_pred             ChhhcCCcEEEEecceeccCCccceeEEEEeCcH-----HHHHHHHHHHHhcCCc--CCH-HHH--HHHHccC--CCHHH
Confidence            2333 68999999999998865   588888764     56566654332 1211  111 111  1123332  24677


Q ss_pred             HHHHHHHHHHHHHHHHHHC-Cc-EeeeCCC---------------CCeeEEecCCCCCCC-HHHHHHHHhhcCeEEccCC
Q 013217          293 YQNKVVSNCRALASRLVEL-GY-KLVSGGS---------------DNHLVLVDLRPMGID-GARVEKILDMASITLNKNS  354 (447)
Q Consensus       293 ~~~~~~~~~~~l~~~L~~~-g~-~~~~~~~---------------~~~~~~v~~~~~~~~-~~~~~~~L~~~gI~v~~~~  354 (447)
                      ++++..+|+..+++.|++. .+ ++..++-               ...++.+++  .+.. ..++.+.|+..+|.++.+.
T Consensus       245 R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~--~~~~~~~~~~~~L~~~~i~~s~G~  322 (378)
T TIGR01329       245 RIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFET--GSVALSKRLVEATKLFSITVSFGS  322 (378)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEE--CCHHHHHHHHHhCcCcccccCCCC
Confidence            8999999999999999873 22 2222211               012333344  2323 4567777877788887642


Q ss_pred             ------CCCCC-----C-------CCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          355 ------VPGDK-----S-------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       355 ------~p~~~-----~-------~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                            .|...     .       ...++-||+|..        -||.+.+.+-|.++|..
T Consensus       323 ~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG--------lE~~~dl~~dl~~al~~  375 (378)
T TIGR01329       323 VNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVG--------IEDVDDLISDLDIAFVT  375 (378)
T ss_pred             CCceeeCCCccccccCCHHHHHhcCCCCCeEEEEec--------cCCHHHHHHHHHHHHHh
Confidence                  13211     0       012346898876        46777777777777764

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK08064 cystathionine beta-lyase; Provisional

Probab=99.86  E-value=7e-20  Score=180.51  Aligned_cols=287  Identities=17%  Similarity=0.182  Sum_probs=187.2

Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217           60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  139 (447)
Q Consensus        60 g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g  139 (447)
                      +++..+.+|    +++++++|.+.     .+.++||+.|+.+++. ++++||+|+++++.|++.+....    ..+...|
T Consensus        52 ~~p~~~~le----~~lA~l~g~~~-----~v~~~sG~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~----~~~~~~G  117 (390)
T PRK08064         52 GNPTREALE----DIIAELEGGTK-----GFAFASGMAAISTAFL-LLSKGDHVLISEDVYGGTYRMIT----EVLSRFG  117 (390)
T ss_pred             CChhHHHHH----HHHHHHhCCCC-----eEEECCHHHHHHHHHH-HhCCCCEEEEccCccchHHHHHH----HHHHHcC
Confidence            456667777    68899999875     2445999988887775 78999999999998887543211    1122334


Q ss_pred             ceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCC
Q 013217          140 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  217 (447)
Q Consensus       140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~  217 (447)
                      .  +++.++.      .|++++++++++ +|++|++++++||+  ..|+++|.++|+++|+++++|++++.+...     
T Consensus       118 ~--~v~~v~~------~d~~~l~~~l~~-~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~-----  183 (390)
T PRK08064        118 I--EHTFVDM------TNLEEVAQNIKP-NTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQ-----  183 (390)
T ss_pred             C--EEEEECC------CCHHHHHHhcCC-CceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCccccc-----
Confidence            3  4444332      278999999877 89999999888775  789999999999999999999997655321     


Q ss_pred             CCCC-cccEEEeCCCcccCCCCC---ceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHH
Q 013217          218 DPFK-YCDVVTTTTHKSLRGPRG---GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY  293 (447)
Q Consensus       218 ~~~~-~~Di~~~s~~K~l~Gp~g---G~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~  293 (447)
                      .|+. ++|+++.|+||+++|+.+   |+++++++     ++.+++.....+.  |......-+.+  +++.+.  .+..+
T Consensus       184 ~~~~~g~Divv~S~tK~~~G~~~~laG~~v~~~~-----~~~~~l~~~~~~~--g~~~~~~~a~l--~~~gl~--tl~~R  252 (390)
T PRK08064        184 KPLDLGADVVLHSATKFLAGHSDVLAGLAVVKDE-----ELAQKLYFLQNSF--GAVLGVQDCWL--VLRGLK--TLHVR  252 (390)
T ss_pred             CchhhCCcEEEeecceeccCCccceeEEEEeCCH-----HHHHHHHHHHHhc--CCCCCHHHHHH--HHcccC--cHHHH
Confidence            2333 589999999999988764   88887753     6777766544322  22121222222  333332  25677


Q ss_pred             HHHHHHHHHHHHHHHHHCC-c-EeeeCCCC---------------CeeEEecCCCCCCCHHHHHHHHhhcCe---EEccC
Q 013217          294 QNKVVSNCRALASRLVELG-Y-KLVSGGSD---------------NHLVLVDLRPMGIDGARVEKILDMASI---TLNKN  353 (447)
Q Consensus       294 ~~~~~~~~~~l~~~L~~~g-~-~~~~~~~~---------------~~~~~v~~~~~~~~~~~~~~~L~~~gI---~v~~~  353 (447)
                      +++..+|+..+.+.|++.+ + ++..++-.               ..++.+++.    +.+++.++++..++   .++.+
T Consensus       253 ~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~----~~~~~~~f~~~l~l~~~~~s~G  328 (390)
T PRK08064        253 LEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQ----SEEAVRQFVSHVKLPVFAVSLG  328 (390)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEEC----CHHHHHHHHHhCCcceEcccCC
Confidence            8999999999999998843 2 23222111               112233332    23456777777776   44443


Q ss_pred             C------CCCC---C--C-------CCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217          354 S------VPGD---K--S-------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       354 ~------~p~~---~--~-------~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~  393 (447)
                      .      .|..   .  .       ...++-||+|.+..+.    ++.++.+.++|++
T Consensus       329 ~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGle~~----~dli~dl~~Al~~  382 (390)
T PRK08064        329 AVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVGLENV----DDLIADFEQALSY  382 (390)
T ss_pred             CCcceeECCcccccccCCHHHHHhcCCCCCeEEEEeccCCH----HHHHHHHHHHHHh
Confidence            1      1111   0  0       0124569999987776    7777777777665

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.86  E-value=5e-20  Score=180.16  Aligned_cols=290  Identities=14%  Similarity=0.088  Sum_probs=182.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccc
Q 013217           59 GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGT  138 (447)
Q Consensus        59 ~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~  138 (447)
                      .|++..+.+|    +.++++.|.+.     .+.++||++|+..++.++++|||+|+++++.|++.....    .......
T Consensus        47 ~gnPt~~~lE----~~lA~l~g~~~-----~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~----~~~~~~~  113 (377)
T TIGR01324        47 RGTLTHFALQ----DAMCELEGGAG-----CYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFC----DIVLKRM  113 (377)
T ss_pred             CCCccHHHHH----HHHHHHhCCCc-----EEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHH----HHHHHhc
Confidence            4667778888    57888999764     244578889999999999999999999988776532100    0011122


Q ss_pred             cceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccC
Q 013217          139 SIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV  216 (447)
Q Consensus       139 g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~  216 (447)
                      |.  ++..++.+      +.+++++++++ +||+|++++++|+.  ..|+++|+++|+++|+++++|++|+.|....   
T Consensus       114 gi--~v~~~d~~------~~e~l~~~i~~-~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~~~---  181 (377)
T TIGR01324       114 GV--DITYYDPL------IGEDIATLIQP-NTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLFK---  181 (377)
T ss_pred             Cc--EEEEECCC------CHHHHHHhcCC-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccC---
Confidence            32  33332211      23789888877 89999998777775  7799999999999999999999998876532   


Q ss_pred             CCCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccCCCCCCC-CcHHHHHHHHHHHHHhcChhHH
Q 013217          217 ADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGG-PHNHTIGGLAVCLKHAQSPEFK  291 (447)
Q Consensus       217 ~~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~-p~~~~~aal~~al~~~~~~~~~  291 (447)
                        |+. ++|++++|++|+++|+.   ||++++++      +..+++.....  ..|+ .+...   .+..++.+.  .+.
T Consensus       182 --pl~~gaDivv~S~tK~l~G~~d~~gG~v~~~~------~~~~~l~~~~~--~~G~~l~p~~---a~~~~rgl~--tl~  246 (377)
T TIGR01324       182 --PLEHGVDISIQAGTKYLVGHSDIMIGTVVANA------RTWDQLREHSY--LMGQMVDADD---AYTTLRGLR--TLG  246 (377)
T ss_pred             --ccccCceEEEecCceeccCCCCceEEEEEeCH------HHHHHHHHHHH--HhCCCCCHHH---HHHHHhhhh--hHH
Confidence              333 69999999999998875   48888776      55554442211  1122 22222   122333333  245


Q ss_pred             HHHHHHHHHHHHHHHHHHHC-Cc-EeeeCC---------------CCCeeEEecCCCCC-CCHHHHHHHHhhcCeEEccC
Q 013217          292 VYQNKVVSNCRALASRLVEL-GY-KLVSGG---------------SDNHLVLVDLRPMG-IDGARVEKILDMASITLNKN  353 (447)
Q Consensus       292 ~~~~~~~~~~~~l~~~L~~~-g~-~~~~~~---------------~~~~~~~v~~~~~~-~~~~~~~~~L~~~gI~v~~~  353 (447)
                      .++++..+|+..+++.|++. .+ ++..++               ...+++.+.+...+ .....+.+.|+-.++.++.+
T Consensus       247 ~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~l~~~~~~~slG  326 (377)
T TIGR01324       247 VRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLTQKQVHAFLDHLQLFGLGYSWG  326 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCCcceEeccCC
Confidence            56899999999999999883 33 333321               11334445553211 11234555555566666653


Q ss_pred             CC------CC-CC-------CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          354 SV------PG-DK-------SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       354 ~~------p~-~~-------~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      ..      |. ..       ....++-||+|..        -||.+.+.+-|.+++.
T Consensus       327 ~~~sl~~~~~~~~~~~~~~~~~~~~~liR~svG--------lE~~~dl~~dl~~al~  375 (377)
T TIGR01324       327 GYESLALCNQPELGHRPNIKRNLEGPLIRVHIG--------LENVDDLKADLKAGFE  375 (377)
T ss_pred             CccceeecCCCCCCHHHHHhccCCCCEEEEEeC--------CCCHHHHHHHHHHHHh
Confidence            21      11 00       0011235888876        3566666766666654

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.86  E-value=6.8e-20  Score=181.21  Aligned_cols=293  Identities=16%  Similarity=0.180  Sum_probs=185.5

Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217           60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  139 (447)
Q Consensus        60 g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g  139 (447)
                      ++....++|    +.+++++|.+.     .+.++||+.|+..++.++++|||+|++.++.|++.+....    ..+...|
T Consensus        62 ~~p~~~~Le----~~iA~~~g~~~-----~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~----~~~~~~G  128 (400)
T PRK06234         62 GNPTSTEVE----NKLALLEGGEA-----AVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLN----HGLTRYG  128 (400)
T ss_pred             CCccHHHHH----HHHHHHhCCCc-----EEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHH----HHHhhCC
Confidence            344566777    57888999763     3456889999999999999999999999988876542110    1122344


Q ss_pred             ceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHh--CCEEEEehhhhcccccccc
Q 013217          140 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAV--GALLMMDMAHISGLVAASV  215 (447)
Q Consensus       140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~--g~~livD~a~~~g~~~~~~  215 (447)
                      .  +++.++.      .|++++++++++ +||+|+++.++||+  ..|+++|.++|+++  |+++++|+++..+...   
T Consensus       129 ~--~v~~vd~------~d~e~l~~~i~~-~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~---  196 (400)
T PRK06234        129 V--EVTFVDT------SNLEEVRNALKA-NTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQ---  196 (400)
T ss_pred             e--EEEEECC------CCHHHHHHHhcc-CCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcC---
Confidence            3  4444332      389999999987 89999999888876  78999999999997  9999999998665332   


Q ss_pred             CCCCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHH
Q 013217          216 VADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK  291 (447)
Q Consensus       216 ~~~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~  291 (447)
                        .++. ++|++++|++|+++|+.   ||++++++      ++.+++.........|.......+.  .+++.+.  .+.
T Consensus       197 --~~l~~g~Divv~S~sK~l~g~g~~~gG~v~~~~------~~~~~l~~~~~~~~~g~~l~p~~a~--l~~~~l~--tl~  264 (400)
T PRK06234        197 --RPLQLGADVVVHSATKYLNGHGDVIAGFVVGKE------EFINQVKLFGIKDMTGSVIGPFEAF--LIIRGMK--TLQ  264 (400)
T ss_pred             --CchhhCCcEEEeeccccccCCCCceeEEEEecH------HHHHHHHHHHHHHhcCCCCCHHHHH--HHHhccC--cHH
Confidence              2333 58999999999997654   59999887      6666654321111112212222222  2333333  356


Q ss_pred             HHHHHHHHHHHHHHHHHHHC-CcE-eeeCCC---------------CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCC
Q 013217          292 VYQNKVVSNCRALASRLVEL-GYK-LVSGGS---------------DNHLVLVDLRPMGIDGARVEKILDMASITLNKNS  354 (447)
Q Consensus       292 ~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~---------------~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~  354 (447)
                      .++++..+|+..+++.|++. .+. +..++-               ..+++.+.+....-....+.+.|+-.++.++.+.
T Consensus       265 ~r~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~~~~~~~f~~~l~~~~~~~s~G~  344 (400)
T PRK06234        265 IRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGGVEEGKVVMNNVKLATLAVSLGD  344 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhCCcceEeccCCC
Confidence            77888999999999999873 332 222210               1234444543210012345555655666665432


Q ss_pred             ------CCCCC------------CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          355 ------VPGDK------------SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       355 ------~p~~~------------~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                            .|...            ....++-||+|.+        -||.+.+.+-|.++|..
T Consensus       345 ~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svG--------lE~~~dl~~dl~~al~~  397 (400)
T PRK06234        345 AETLIQHPASMTHSPYTAEERKEAGISDGLVRLSVG--------LEDVDDIIADLKQALDL  397 (400)
T ss_pred             CCceecCCccCCCCCCCHHHHHhcCCCCCeEEEEeC--------CCCHHHHHHHHHHHHHH
Confidence                  13211            0112346899876        35666666666666653

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=99.86  E-value=7e-20  Score=179.86  Aligned_cols=213  Identities=19%  Similarity=0.202  Sum_probs=149.0

Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217           60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  139 (447)
Q Consensus        60 g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g  139 (447)
                      +++..+.+|    ++++++.|.+.     .+...||++|+..++.++++|||+|++.++.|++.+....    ......+
T Consensus        50 ~~pt~~~L~----~~lA~l~g~~~-----~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~----~~~~~~g  116 (386)
T PRK08045         50 GNPTRDVVQ----RALAELEGGAG-----AVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFD----SLAKRGC  116 (386)
T ss_pred             CCccHHHHH----HHHHHHhCCCe-----EEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHH----HHHhhCC
Confidence            445566776    58888988642     3445777799999999999999999999998876432110    0001111


Q ss_pred             ceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCC
Q 013217          140 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  217 (447)
Q Consensus       140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~  217 (447)
                        +++..  ++    ..|++++++++++ +|++|+++.++||+  ..|+++|.++|+++|+++++|+++..+..     .
T Consensus       117 --i~v~~--vd----~~d~e~l~~~l~~-~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~-----~  182 (386)
T PRK08045        117 --YRVLF--VD----QGDEQALRAALAE-KPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPAL-----Q  182 (386)
T ss_pred             --eEEEE--eC----CCCHHHHHHhccc-CCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCcccc-----C
Confidence              23333  22    3689999999877 89999999888886  78999999999999999999999865532     2


Q ss_pred             CCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccC-CCCCCCCcHHHHHHHHHHHHHhcChhHHH
Q 013217          218 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVF-PGLQGGPHNHTIGGLAVCLKHAQSPEFKV  292 (447)
Q Consensus       218 ~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~-~~~~g~p~~~~~aal~~al~~~~~~~~~~  292 (447)
                      .|+. ++|+++.|+|||++|+.   +|+++++++     ++.+++..... .+..  .+...   .+.+++.+.+  +..
T Consensus       183 ~pl~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~-----~~~~~l~~~~~~~g~~--~~p~~---~~l~~rgl~t--l~~  250 (386)
T PRK08045        183 NPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDP-----DVVTELAWWANNIGVT--GGAFD---SYLLLRGLRT--LVP  250 (386)
T ss_pred             CchhhCCCEEEeecceeccCCCCceeEEEEeCcH-----HHHHHHHHHHHhcCCC--CCHHH---HHHHHhhhcc--HHH
Confidence            3444 68999999999999887   488877653     56665543221 1211  12111   1223333332  667


Q ss_pred             HHHHHHHHHHHHHHHHHHC
Q 013217          293 YQNKVVSNCRALASRLVEL  311 (447)
Q Consensus       293 ~~~~~~~~~~~l~~~L~~~  311 (447)
                      +++++.+|+..+++.|++.
T Consensus       251 R~~~~~~na~~la~~L~~~  269 (386)
T PRK08045        251 RMELAQRNAQAIVKYLQTQ  269 (386)
T ss_pred             HHHHHHHHHHHHHHHHHcC
Confidence            8999999999999999884

>PLN02452 phosphoserine transaminase

Probab=99.86  E-value=4.3e-19  Score=172.02  Aligned_cols=336  Identities=15%  Similarity=0.129  Sum_probs=217.1

Q ss_pred             hcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCC-cccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHH
Q 013217           20 FKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA   98 (447)
Q Consensus        20 ~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~-~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a   98 (447)
                      .+.+++.|++..+|+.|++++...+.+.-..|..-. -.+.+.++.+.++ .+++.++++++.+.+ +.+.+...|||.+
T Consensus         6 ~~~~~f~pGP~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~-~~~~~L~~l~~~p~~-y~v~~l~Gsgt~~   83 (365)
T PLN02452          6 GRVFNFSAGPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQ-KAEADLRELLDIPDN-YEVLFLQGGASTQ   83 (365)
T ss_pred             CceEeeeCCCCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHH-HHHHHHHHHhCCCCC-ceEEEEeCccHHH
Confidence            345899999999999999999887765211222111 1123455555554 678899999998543 2244556888899


Q ss_pred             HHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCC
Q 013217           99 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS  178 (447)
Q Consensus        99 ~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~  178 (447)
                      +.++..+++.+||++++..   .|.++..+.   +.+...|....+...+-......+|+++++.  .+ +.+.|.+++.
T Consensus        84 ~ea~~~nl~~~~~~~l~~~---~G~fg~r~~---~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~v~~~hn  154 (365)
T PLN02452         84 FAAIPLNLCKPGDKADFVV---TGSWSKKAA---KEAKKYCKTNVIASGKDEKYTKIPSVSEWEL--TP-DAKFVHICAN  154 (365)
T ss_pred             HHHHHHhcCCCCCeEEEEE---CCHHHHHHH---HHHHHhCCCcEEEecCCCCCCCCCChHHcCC--CC-CCcEEEECCC
Confidence            9999999999999999876   333332211   1222333311111100110112567777532  22 5677877744


Q ss_pred             CCCC---CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhH
Q 013217          179 AYPR---DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVEL  254 (447)
Q Consensus       179 ~~~~---~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~  254 (447)
                      .+++   ..|++++.      ++++++|+++++|..+.++..     .++..+|.||++ ||.| |++++++      ++
T Consensus       155 ETstGv~~~~~~~i~------~~~lvVDa~Ss~g~~pidv~~-----~~v~~~saqK~l-GP~Gl~~v~vr~------~~  216 (365)
T PLN02452        155 ETIHGVEFKDYPDVG------NVPLVADMSSNFLSKPVDVSK-----YGVIYAGAQKNV-GPSGVTIVIIRK------DL  216 (365)
T ss_pred             CCCCcEecCcccccC------CCeEEEECCccccCcccCHHH-----cCEEEEeccccc-CCCCeEEEEEcH------HH
Confidence            3332   25666654      389999999988866544322     345557999988 7999 9999998      44


Q ss_pred             HHHhhhcc-----------CCCCCCCCcHHHHHHHHHHHHHhcCh-hHHHHHHHHHHHHHHHHHHHHH-CCcEee-eCCC
Q 013217          255 ESAINNAV-----------FPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVE-LGYKLV-SGGS  320 (447)
Q Consensus       255 ~~~i~~~~-----------~~~~~g~p~~~~~aal~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~-~g~~~~-~~~~  320 (447)
                      .+++....           ...+.+||+.+.+.++..+++++.++ +++.+.++..+.++++.+.|.+ .|+... .+..
T Consensus       217 l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~  296 (365)
T PLN02452        217 IGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKS  296 (365)
T ss_pred             HhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChH
Confidence            44432210           11224799999999999999998875 7899999999999999999988 577111 1101


Q ss_pred             -CCe-eEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          321 -DNH-LVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       321 -~~~-~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                       .+. .+.+.+.... ..+++.+.++++|+..    ++|+..   -+++|+|+-..    |..++++.|++++++.-+
T Consensus       297 ~rs~~~vsF~~~~~~-~~~~f~~~~~~~g~~~----~~G~r~---~gg~R~s~yna----~~~~~v~~L~~~m~~f~~  362 (365)
T PLN02452        297 VRSLMNVPFTLGGSE-LEAEFVKEAAKAGMVQ----LKGHRS---VGGMRASIYNA----MPLAGVEKLVAFMKDFQA  362 (365)
T ss_pred             HhCCeEEEEEcCCch-hHHHHHHHHHHCCCcc----cCCccc---cCceEEECcCC----CCHHHHHHHHHHHHHHHH
Confidence             122 2233333322 4567888899999987    566642   23599996433    559999999999987654

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=99.86  E-value=1e-19  Score=180.65  Aligned_cols=331  Identities=15%  Similarity=0.177  Sum_probs=194.9

Q ss_pred             hcCeeEecCC----C-CCC--HHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CCCccceee
Q 013217           20 FKSLELIASE----N-FTS--RAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNV   90 (447)
Q Consensus        20 ~~~i~l~~~~----n-~~~--~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~~~~~v   90 (447)
                      ...|+|..+.    + ..|  +.+.+++.+.+......+|+..      ....++.+.+.+++.+..+.  +++++  .|
T Consensus        26 ~~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~~~~Y~~~------~G~~~lR~aia~~~~~~~~~~~~~~~i--~v   97 (396)
T PRK09257         26 PDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTKNYLPI------EGLAAYRQAVQELLFGADSPALAAGRV--AT   97 (396)
T ss_pred             cCcEecceeeEECCCCCEeccHHHHHHHHHhcccccCCCcCCC------CCCHHHHHHHHHHhcCCCCcccccCeE--EE
Confidence            4568876652    2 223  6788887776543211133321      22234544444565544332  34432  23


Q ss_pred             ecCCcH-HHHHHHHHHh--cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEeccc-CCCCCCCCHHHHHHHhh
Q 013217           91 QPLSGS-PANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-DESTGLVDYDMLEKTAI  166 (447)
Q Consensus        91 ~~~sGs-~a~~~~~~al--~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~id~~~l~~~~~  166 (447)
                      .+|+|+ +|+..++.++  ++|||+|++.+|.|.++..        .+...|.  +++++++ +++++.+|++++++.++
T Consensus        98 ~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~--------~~~~~g~--~~v~v~~~~~~~~~~d~~~l~~~~~  167 (396)
T PRK09257         98 VQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRA--------IFEAAGL--EVKTYPYYDAATKGLDFDAMLADLS  167 (396)
T ss_pred             EecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHH--------HHHHcCC--cEEEEeccccccCccCHHHHHHHHH
Confidence            568887 8888887665  5899999999998877642        3344554  5555555 33457899999999886


Q ss_pred             hhC--CcEEEEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhcccccc-ccCCCCC---C---cccEEEeCCCc
Q 013217          167 LFR--PKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAA-SVVADPF---K---YCDVVTTTTHK  232 (447)
Q Consensus       167 ~~~--~klii~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~-~~~~~~~---~---~~Di~~~s~~K  232 (447)
                      ..+  ++++++++++||+  ..   .+++|.++|++||+++++|+++ .++... +....++   .   ..-++++|++|
T Consensus       168 ~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y-~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK  246 (396)
T PRK09257        168 QAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAY-QGFGDGLEEDAYGLRAFAAAGLELLVASSFSK  246 (396)
T ss_pred             hCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccc-cccccchHHHHHHHHHHHhcCCcEEEEEEcCC
Confidence            433  3455557788886  33   3578889999999999999984 444432 1000111   1   12377899999


Q ss_pred             ccC--CCCCceEEe--ecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHh-----cChhHHHHHHHHHHHHHH
Q 013217          233 SLR--GPRGGMIFF--KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHA-----QSPEFKVYQNKVVSNCRA  303 (447)
Q Consensus       233 ~l~--Gp~gG~i~~--~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~-----~~~~~~~~~~~~~~~~~~  303 (447)
                      +++  |.|.||+++  .+. .....+...+....... .++++.....+++..+..-     .....++..+++.++++.
T Consensus       247 ~~~~~GlRiG~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~  324 (396)
T PRK09257        247 NFGLYGERVGALSVVAEDA-EEADRVLSQLKATIRTN-YSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQL  324 (396)
T ss_pred             cCccccccceeEEEEeCCH-HHHHHHHHHHHHHhhhh-cCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            873  889999974  221 00001222232221111 2223333222233233211     011234556777888888


Q ss_pred             HHHHHHHCC----cEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCC
Q 013217          304 LASRLVELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGF  379 (447)
Q Consensus       304 l~~~L~~~g----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~  379 (447)
                      +.+.|++.+    +.+..+ ....++|+.+     +.+.+.+.+++.||.+.    |        .+ |+++...+    
T Consensus       325 l~~~L~~~~~~~~~~~~~p-~gg~~~w~~l-----~~~~~~~l~~~~~V~~~----p--------~~-ri~~~~~~----  381 (396)
T PRK09257        325 LVEALKAKGPSRDFDFIAR-QRGMFSYSGL-----TPEQVDRLREEFGVYAV----G--------SG-RINVAGLN----  381 (396)
T ss_pred             HHHHHHhcCCCCCcccccc-cceEEEecCC-----CHHHHHHHHHcCCEEEc----C--------CC-eEEEeeCC----
Confidence            999998854    444332 3456677765     34567777789999882    2        12 88875433    


Q ss_pred             CHHHHHHHHHHHHHHH
Q 013217          380 SEKEFVAIADFIHEGV  395 (447)
Q Consensus       380 ~~~di~~l~~~i~~~l  395 (447)
                       +++++++++.|++++
T Consensus       382 -~~~i~~~~~~i~~~~  396 (396)
T PRK09257        382 -ESNIDYVAEAIAAVL  396 (396)
T ss_pred             -HHHHHHHHHHHHhhC
Confidence             789999999998753

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=99.85  E-value=6.2e-19  Score=176.34  Aligned_cols=343  Identities=13%  Similarity=0.057  Sum_probs=198.9

Q ss_pred             hcCeeEecCCCC-CC---HHHHHHHhhhhhcc-CC---CCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCcccee
Q 013217           20 FKSLELIASENF-TS---RAVMEAVGSCLTNK-YS---EGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVN   89 (447)
Q Consensus        20 ~~~i~l~~~~n~-~~---~~v~~a~~~~~~~~-~~---~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~   89 (447)
                      ...|+|..+... .+   +.+.+++...+... +.   .+|+.      ......+.+.+.+++.+.+|.+  ++    +
T Consensus        30 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~------~~G~~~LR~aia~~~~~~~g~~v~~~----~   99 (416)
T PRK09440         30 PGAIMLGGGNPAHIPEMEDYFRDLLADLLASGKLTEALGNYDG------PQGKDELIEALAALLNERYGWNISPQ----N   99 (416)
T ss_pred             CCceeccCCCCCccCCHHHHHHHHHHHHhcCcccccccccCCC------CCCCHHHHHHHHHHHHHHhCCCCChh----h
Confidence            345787654432 22   34566665544321 10   12332      2222345555556777766754  44    4


Q ss_pred             eecCCcH-HHHHHHHHHhcC-----CCCEEEE-ecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHH
Q 013217           90 VQPLSGS-PANFEVYTAILK-----PHDRIMG-LDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLE  162 (447)
Q Consensus        90 v~~~sGs-~a~~~~~~al~~-----pgd~Vl~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~  162 (447)
                      |.+|+|+ +++..++.++++     |||.|++ .+|.|+++......   .. ...+....+++++.+...+.+|+++++
T Consensus       100 I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~d~~~l~  175 (416)
T PRK09440        100 IALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLE---ED-LFVSYRPNIELLPEGQFKYHVDFEHLH  175 (416)
T ss_pred             EEEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhc---cC-ceeecccccccccccccccCCCHHHcc
Confidence            5569998 888888888885     6999999 69988775421100   00 011111122232211113579999997


Q ss_pred             HHhhhhCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCC--C-CCcccEEEeCCCcc-
Q 013217          163 KTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVAD--P-FKYCDVVTTTTHKS-  233 (447)
Q Consensus       163 ~~~~~~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~--~-~~~~Di~~~s~~K~-  233 (447)
                        +.. ++++++++.|+||+  ..+   +++|.++|+++|+++|+|+++... ........  + ....-+++.|++|+ 
T Consensus       176 --~~~-~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~-~~~~~~~~~~~~~~~~vI~~~SfSK~~  251 (416)
T PRK09440        176 --IDE-DTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPP-FPGIIFSEATPLWNPNIILCMSLSKLG  251 (416)
T ss_pred             --cCC-CceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCcccc-CCCcchhhcCccccCCeEEEecccccC
Confidence              343 78999998888886  444   578888999999999999997421 11000000  1 01123778999997 


Q ss_pred             cCCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHH-----HHHHHHHHHHHHHHHH
Q 013217          234 LRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKV-----YQNKVVSNCRALASRL  308 (447)
Q Consensus       234 l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~-----~~~~~~~~~~~l~~~L  308 (447)
                      ++|.|.||++.++      ++.+.+.........+.+...+ .+++.++..   ..+.+     ..+.+.++.+.+.+.|
T Consensus       252 ~pGlRiG~~i~~~------~l~~~~~~~~~~~~~~~s~~~q-~~~~~~l~~---~~~~~~~~~~~~~~~~~r~~~~~~~L  321 (416)
T PRK09440        252 LPGVRCGIVIADE------EIIEALSNMNGIISLAPGRLGP-AIAAEMIES---GDLLRLSETVIRPFYRQKVQLAIALL  321 (416)
T ss_pred             CCcceEEEEeCCH------HHHHHHHHHHHHhccCCCcHHH-HHHHHHhcc---chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4688889999887      6777766543322222222322 233334332   22321     2333455556666666


Q ss_pred             HH----CCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC--CC--CCCCeEEEecCccccCCCC
Q 013217          309 VE----LGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK--SA--LVPGGIRIGSPAMTTRGFS  380 (447)
Q Consensus       309 ~~----~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~--~~--~~~~~iRig~~~~~~~g~~  380 (447)
                      .+    .++.+..+ ..+.++|+++...+.+..++.+.|.++||.+..+...+..  ..  ...+++||++..  +    
T Consensus       322 ~~~l~~~~~~~~~p-~gg~fiw~~~~~~~~~~~~~~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~--~----  394 (416)
T PRK09440        322 RRYLPDEPCLIHKP-EGAIFLWLWFKDLPITTEELYQRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQ--D----  394 (416)
T ss_pred             HHhcccCCeEEecC-CCceEEEEECCCCCCCHHHHHHHHHHCCEEEechHhhCCCCccccCCcCceEEEEecC--C----
Confidence            55    23443332 3467788888653456678888888999999764322111  00  013589999752  3    


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 013217          381 EKEFVAIADFIHEGVEI  397 (447)
Q Consensus       381 ~~di~~l~~~i~~~l~~  397 (447)
                      ++++++..+.|++++..
T Consensus       395 ~~~l~~~i~~l~~~~~~  411 (416)
T PRK09440        395 DEEIEKGIAILAEEVEK  411 (416)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            78999999999888764

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.85  E-value=9.8e-20  Score=178.90  Aligned_cols=214  Identities=19%  Similarity=0.161  Sum_probs=150.2

Q ss_pred             CchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccc
Q 013217           59 GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGT  138 (447)
Q Consensus        59 ~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~  138 (447)
                      .+++...++|    +.+++++|.+.     .+.++||++|+..++.++++|||+|++..+.|++......     .+...
T Consensus        50 ~~np~~~~lE----~~lA~l~g~~~-----~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~-----~~~~~  115 (385)
T PRK08574         50 EENPTLRPLE----EALAKLEGGVD-----ALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLK-----SLEKF  115 (385)
T ss_pred             CCCccHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHH-----Hhhcc
Confidence            3556677887    57899999864     2445889999999999999999999999988877532110     01122


Q ss_pred             cceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccC
Q 013217          139 SIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV  216 (447)
Q Consensus       139 g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~  216 (447)
                      |.  ++..+       .+|++++++++++.+||+|++..++||+  ..|+++|.++|+++|+++++|++|+.|+...   
T Consensus       116 g~--~v~~~-------~~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~~~---  183 (385)
T PRK08574        116 GV--KVVLA-------YPSTEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYR---  183 (385)
T ss_pred             Cc--EEEEE-------CCCHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCC---
Confidence            32  32221       2468999999876579999998888875  7899999999999999999999987775432   


Q ss_pred             CCCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHH
Q 013217          217 ADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKV  292 (447)
Q Consensus       217 ~~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~  292 (447)
                        |+. ++|++++|+||+++|+.   ||+++++++     ++.+++......  .|.......+  +.+++.+.  .+..
T Consensus       184 --~l~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~-----~~~~~~~~~~~~--~g~~~~p~~a--~l~l~~l~--tL~~  250 (385)
T PRK08574        184 --PLRHGADFVVHSLTKYIAGHNDVVGGVAVAWSG-----EFLEELWEWRRR--LGTIMQPFEA--YLVLRGLK--TLEV  250 (385)
T ss_pred             --hhhhCCcEEEeeCceeecCCCCceeEEEEECcH-----HHHHHHHHHHHh--cCCCCCHHHH--HHHHcccC--cHHH
Confidence              232 58999999999998874   586666553     666655432211  1221112222  22344333  3667


Q ss_pred             HHHHHHHHHHHHHHHHHHC
Q 013217          293 YQNKVVSNCRALASRLVEL  311 (447)
Q Consensus       293 ~~~~~~~~~~~l~~~L~~~  311 (447)
                      ++++..+|+..+++.|++.
T Consensus       251 R~~~~~~na~~la~~L~~~  269 (385)
T PRK08574        251 RFERQCRNAMAIAEFLSEH  269 (385)
T ss_pred             HHHHHHHHHHHHHHHHHcC
Confidence            8899999999999999873

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.85  E-value=5.6e-19  Score=175.33  Aligned_cols=316  Identities=18%  Similarity=0.201  Sum_probs=191.3

Q ss_pred             CCCCCHHHHHHHhhhhhccCCC-CCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc
Q 013217           29 ENFTSRAVMEAVGSCLTNKYSE-GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL  107 (447)
Q Consensus        29 ~n~~~~~v~~a~~~~~~~~~~~-g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~  107 (447)
                      -.++|++|++++...+.+ |.. .|.-.....+ ...+.+|    +.+++++|++..     +.++||+.|+..++. .+
T Consensus        90 ~s~l~~~vieAv~~~~~~-y~~l~~~l~~g~~g-~r~~~le----~~lA~l~gae~a-----lvv~sg~aAi~l~l~-~l  157 (454)
T TIGR00474        90 RAPLAEEAIEAVTDAARG-YSNLEYDLETGKRG-SRYSHVE----GLLCELTGAEDA-----LVVNNNAAAVLLALN-TL  157 (454)
T ss_pred             CCCCCHHHHHHHHHHHhc-ccchhccccccccc-hHHHHHH----HHHHHHhCCCcE-----EEECCHHHHHHHHHH-Hh
Confidence            346689999999887764 321 1110000011 2233444    789999999863     335889889887774 47


Q ss_pred             CCCCEEEEecCCC---CcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCC---
Q 013217          108 KPHDRIMGLDLPH---GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP---  181 (447)
Q Consensus       108 ~pgd~Vl~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~---  181 (447)
                      .+||+|++.+.+|   ++.+...     ..+...|.  +++.++.+   ...|++++++++++ +|++|++.+++|+   
T Consensus       158 ~~GdeVIvs~~e~v~~ggs~~i~-----~~~~~~G~--~~~~v~~~---~~~~l~dle~aI~~-~T~lv~~~h~sN~~~~  226 (454)
T TIGR00474       158 AKGKEVIVSRGELVEIGGSFRIP-----DVMEQSGA--KLVEVGTT---NRTHLKDYEDAITE-NTALLLKVHTSNYRIV  226 (454)
T ss_pred             CCcCEEEECCChhhhhcchhhHH-----HHHHHcCC--EEEEeCCC---CCCCHHHHHHhcCc-CCEEEEEEccCccccc
Confidence            8999999987663   3332211     12233454  55554432   34689999999987 8999887744433   


Q ss_pred             ---CCCChHHHHHHHHHhCCEEEEehhhhcccccc----ccCC-----CCCC-cccEEEeCCCcccCCCCCceEEeecCC
Q 013217          182 ---RDFDYPRMRQIADAVGALLMMDMAHISGLVAA----SVVA-----DPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDP  248 (447)
Q Consensus       182 ---~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~----~~~~-----~~~~-~~Di~~~s~~K~l~Gp~gG~i~~~~~~  248 (447)
                         ...|+++|+++|+++|+++++|.+  +|.+..    +...     .+.. ++|++++|+||||+||.+|++++++  
T Consensus       227 G~~~~~dl~~I~~la~~~g~~vivD~~--sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~~G~i~g~~--  302 (454)
T TIGR00474       227 GFTEEVSIAELVALGREHGLPVMEDLG--SGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQAGIIVGKK--  302 (454)
T ss_pred             CCCCCCCHHHHHHHHHHcCCeEEEECC--CcccccchhccCCCCcccccHhHcCCCEEEecCccccCCCeEEEEEECH--
Confidence               257999999999999999999974  454311    1111     1222 6999999999999999999999988  


Q ss_pred             cchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChh-----------HHHHHHHHHHHHHHHHHHHHH---CCc-
Q 013217          249 VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPE-----------FKVYQNKVVSNCRALASRLVE---LGY-  313 (447)
Q Consensus       249 ~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~-----------~~~~~~~~~~~~~~l~~~L~~---~g~-  313 (447)
                          ++.+++......... -..-..++++...++....+.           .....+++.+++..+++.|++   .|+ 
T Consensus       303 ----~~i~~l~~~~l~r~l-r~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~  377 (454)
T TIGR00474       303 ----ELIERLKKNPLTRAL-RVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLKAALGPGFE  377 (454)
T ss_pred             ----HHHHhhhhchhHHHH-hhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHhhccCCce
Confidence                565554431100000 001112344444444433221           112345788899999999977   333 


Q ss_pred             -Eeee------CCC--CC--eeEEecCCCCCCCHHHHHHHHhhcC--eEEccCCCCCCCCCCCCCeEEEecCccccCCCC
Q 013217          314 -KLVS------GGS--DN--HLVLVDLRPMGIDGARVEKILDMAS--ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFS  380 (447)
Q Consensus       314 -~~~~------~~~--~~--~~~~v~~~~~~~~~~~~~~~L~~~g--I~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~  380 (447)
                       ++..      +|+  ..  .-.-+.+.+.+.+..++.+.|++..  |..+.          ..+.+-+     .-|.+.
T Consensus       378 ~~~~~~~~~~ggg~~p~~~l~~~~v~~~~~~~~~~~l~~~lr~~~~~ii~r~----------~~~~~~l-----d~r~~~  442 (454)
T TIGR00474       378 LEIVPGLSQVGGGSLPDERLPSYAVTLTPDGLSAEKLEARLRELPPPIIGRI----------EDDRFLL-----DLRTLL  442 (454)
T ss_pred             EEEEEcCCcccCCCCcCCCCCeEEEEEecCCCCHHHHHHHHhcCCCCEEEEE----------ECCEEEE-----EeCcCC
Confidence             3332      121  11  1123344455667889999998765  44421          1223443     335566


Q ss_pred             HHHHHHHHHHH
Q 013217          381 EKEFVAIADFI  391 (447)
Q Consensus       381 ~~di~~l~~~i  391 (447)
                      ++|++.+++.|
T Consensus       443 ~~~~~~~~~~~  453 (454)
T TIGR00474       443 EDEEELLIEAL  453 (454)
T ss_pred             HHHHHHHHHHh
Confidence            89999998875

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PLN02242 methionine gamma-lyase

Probab=99.85  E-value=1.4e-19  Score=179.34  Aligned_cols=224  Identities=18%  Similarity=0.190  Sum_probs=156.8

Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217           60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  139 (447)
Q Consensus        60 g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g  139 (447)
                      +++...++|    +++++++|.+..     +.++||++|+..++.++++|||+|++..+.|+++......   ...+..|
T Consensus        74 ~~Pt~~~LE----~~lA~l~g~~~~-----l~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~---~~~~~~G  141 (418)
T PLN02242         74 FNPTVLNLG----RQMAALEGTEAA-----YCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAH---FLPRKCN  141 (418)
T ss_pred             CChhHHHHH----HHHHHHhCCCeE-----EEEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHH---hhhhccC
Confidence            567778888    588999999862     3458889999999999999999999998877665311000   0001233


Q ss_pred             ceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCC
Q 013217          140 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  217 (447)
Q Consensus       140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~  217 (447)
                      .  +++.++.      .|++++++++++.+||+|++++++||+  ..|+++|.++|+++|+++++|++|. .+..     
T Consensus       142 ~--~~~~~d~------~d~e~l~~~i~~~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~-~~~~-----  207 (418)
T PLN02242        142 I--TTTFVDI------TDLEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFA-PMVL-----  207 (418)
T ss_pred             c--eEEEcCC------CCHHHHHHhcCcCCCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCC-ccCC-----
Confidence            2  3333222      389999999976359999999888876  7799999999999999999999974 3221     


Q ss_pred             CCCC-cccEEEeCCCcccCCC--C-CceEEeecCCcchhhHHHHhhhccCC--CCCCCCcHHHHHHHHHHHHHhcChhHH
Q 013217          218 DPFK-YCDVVTTTTHKSLRGP--R-GGMIFFKKDPVLGVELESAINNAVFP--GLQGGPHNHTIGGLAVCLKHAQSPEFK  291 (447)
Q Consensus       218 ~~~~-~~Di~~~s~~K~l~Gp--~-gG~i~~~~~~~~~~~~~~~i~~~~~~--~~~g~p~~~~~aal~~al~~~~~~~~~  291 (447)
                      .+.. ++|++++|++|+++|+  + ||++++++      ++.+.+......  ...|.+...+.|++. + ..+  ..+.
T Consensus       208 ~~~~~g~divv~S~SK~l~g~g~~~gG~iv~~~------~li~~l~~~~~~~~~~~g~~~~~~~A~l~-~-~~l--~tl~  277 (418)
T PLN02242        208 SPARLGADVVVHSISKFISGGADIIAGAVCGPA------ELVNSMMDLHHGALMLLGPTMNPKVAFEL-S-ERL--PHLS  277 (418)
T ss_pred             CHHHcCCcEEEEeCccccCCCCCceEEEEEcCH------HHHHHHHHHhhhhhhccCCCCCHHHHHHH-H-cCC--CcHH
Confidence            1222 4899999999998654  3 69998877      666666543221  123433434444332 2 222  2456


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCcEeeeCC
Q 013217          292 VYQNKVVSNCRALASRLVELGYKLVSGG  319 (447)
Q Consensus       292 ~~~~~~~~~~~~l~~~L~~~g~~~~~~~  319 (447)
                      .++++..+|++.+++.|++.++++..++
T Consensus       278 ~r~~~~~~~a~~la~~L~~~~~~V~yP~  305 (418)
T PLN02242        278 LRMKEHCRRAMEYAKRMKELGLKVIYPG  305 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCEEECCC
Confidence            6788999999999999999888877543

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.85  E-value=4.7e-19  Score=174.48  Aligned_cols=310  Identities=14%  Similarity=0.145  Sum_probs=190.2

Q ss_pred             HHHHHHHHHHHHHHcCCCCCccceeeecCCcH-HHHHHHHHHhc--C-CCCEEEEecCCCCcccCCCccccccccccccc
Q 013217           65 DELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAIL--K-PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI  140 (447)
Q Consensus        65 ~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a~~~~~~al~--~-pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~  140 (447)
                      -.+......++++++|++..+.  .+.+++|| .++.+++.++-  + +||+|+++...|.+..        +.+.+.|.
T Consensus       104 ~~l~~~~e~~~~~~~G~~~~~~--a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~--------kAi~~~G~  173 (444)
T TIGR03531       104 YKLTNKLVKDFLKLLGLRSIKS--AFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCI--------KAISTAGF  173 (444)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCE--EEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHH--------HHHHHcCC
Confidence            3444445578999999983222  23346777 57777777763  2 6999999887654432        35567776


Q ss_pred             eeEEEecccCCCCCCCCHHHHHHHhhhh--CCcEEEEcCCC-CC-C-CCChHHHHHHHHHhCCEEEEehhhhcccccccc
Q 013217          141 YFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASA-YP-R-DFDYPRMRQIADAVGALLMMDMAHISGLVAASV  215 (447)
Q Consensus       141 ~~~~~~~~~~~~~~~id~~~l~~~~~~~--~~klii~~~~~-~~-~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~  215 (447)
                      ...+++...+++++.+|+++|++++++.  ++.+++++.++ ++ + ..|+++|.++|++||+++++|+||+.+......
T Consensus       174 ~pv~Vd~~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~  253 (444)
T TIGR03531       174 EPRVIETVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYME  253 (444)
T ss_pred             eEEEeeeeecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhh
Confidence            4444443245677899999999999862  33455555443 33 2 779999999999999999999998754322111


Q ss_pred             C-CCCC--CcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHH
Q 013217          216 V-ADPF--KYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK  291 (447)
Q Consensus       216 ~-~~~~--~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~  291 (447)
                      . ...+  +.+|++++|+||++..|.+ |+++++++     ++.+.+... .++..  .....+ .++.++..+...+++
T Consensus       254 ~~~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~-----el~~~i~~~-y~g~~--~~s~~~-~~~~~ll~~G~~g~~  324 (444)
T TIGR03531       254 LINKAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDE-----NFIQEISKS-YPGRA--SASPSL-DVLITLLSLGSKGYL  324 (444)
T ss_pred             hhhccccccCCCeEEEeCccCCCCCCCEEEEEECCH-----HHHHHHHHh-ccCCC--CChHHH-HHHHHHHHhCHHHHH
Confidence            1 0112  2379999999999987655 66778664     677777654 23321  122222 234445555567889


Q ss_pred             HHHHHHHHHHHHHHHHHHH----CCcEeeeCCCCCeeEE-ecCCCC-CCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCC
Q 013217          292 VYQNKVVSNCRALASRLVE----LGYKLVSGGSDNHLVL-VDLRPM-GIDGARVEKILDMASITLNKNSVPGDKSALVPG  365 (447)
Q Consensus       292 ~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~~~~~~~-v~~~~~-~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~  365 (447)
                      +++++..++++++.+.|.+    .|.+++.. +.|.+.+ +.+... +.+...+-..|...+|.-.....|++.......
T Consensus       325 ~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~-~~n~is~~~~~~~~~~~~~~~~g~~l~~~~v~g~r~v~~~~~~~~~~~  403 (444)
T TIGR03531       325 ELLKERKEMYKYLKELLQKLAERHGERLLDT-PENPISSAMTLSTLKGKDPTMLGSMLYSRRVTGPRVVTNGDSKTVGGC  403 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCcEeecC-CCCceeEEEecccccccCHHHHHHHHHhCCCCCceeecCCCceEECCE
Confidence            9999999999999998876    46776642 2344322 233211 234556777776666642221123331111100


Q ss_pred             eE-EEecC-------c---cccCCCCHHHHHHHHHHHHHH
Q 013217          366 GI-RIGSP-------A---MTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       366 ~i-Rig~~-------~---~~~~g~~~~di~~l~~~i~~~  394 (447)
                      .+ -+|.+       +   ....|++.+|++.+.+.|+++
T Consensus       404 ~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~  443 (444)
T TIGR03531       404 EFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKS  443 (444)
T ss_pred             EeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhc
Confidence            11 11111       2   234589999999999988775

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.85  E-value=2e-19  Score=177.98  Aligned_cols=218  Identities=17%  Similarity=0.186  Sum_probs=150.7

Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217           60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  139 (447)
Q Consensus        60 g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g  139 (447)
                      +++....+|    +.+++++|+++     .+.++||+.|+..++.++++|||+|++..+.|++.+...    ...+...|
T Consensus        63 ~~p~~~~le----~~lA~l~g~~~-----~i~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~----~~~~~~~G  129 (403)
T PRK07503         63 SNPTLALLE----QRMASLEGGEA-----AVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFL----HHGLGEFG  129 (403)
T ss_pred             CCchHHHHH----HHHHHHhCCCc-----EEEEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHHH----HHHHhhCC
Confidence            345566777    57899999875     245689999999999999999999999988776543210    01122234


Q ss_pred             ceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCC
Q 013217          140 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  217 (447)
Q Consensus       140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~  217 (447)
                        +++..++.      .|++++++++++ +||+|++..++||+  ..|+++|.++|+++|+++++|++|+.+..     .
T Consensus       130 --~~v~~vd~------~d~~~l~~~i~~-~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~-----~  195 (403)
T PRK07503        130 --VTVRHVDL------TDPAALKAAISD-KTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYL-----Q  195 (403)
T ss_pred             --EEEEEeCC------CCHHHHHHhcCc-cCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccccc-----C
Confidence              34444333      378999999987 89999998777775  77999999999999999999999865532     1


Q ss_pred             CCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHH
Q 013217          218 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY  293 (447)
Q Consensus       218 ~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~  293 (447)
                      .|+. ++|++++|++|+++|+.   ||+++.++      ++.+++.........|.......++  .+++.+.  .+..+
T Consensus       196 ~~l~~g~Di~v~S~tK~l~g~gd~~gG~v~~~~------~l~~~l~~~~~~~~~g~~~s~~~a~--l~l~~L~--tl~~r  265 (403)
T PRK07503        196 RPLELGADLVVHSATKYLGGHGDITAGLVVGGK------ALADRIRLEGLKDMTGAVMSPFDAF--LLMRGLK--TLALR  265 (403)
T ss_pred             CchhhCCCEEEccccccccCCCceeEEEEEcCH------HHHHHHHhhhHHhCcCCCCCHHHHH--HHHcCcc--hHHHH
Confidence            2333 58999999999998753   68888655      6766665321111222222222222  2333332  35677


Q ss_pred             HHHHHHHHHHHHHHHHHC-CcE
Q 013217          294 QNKVVSNCRALASRLVEL-GYK  314 (447)
Q Consensus       294 ~~~~~~~~~~l~~~L~~~-g~~  314 (447)
                      +++..+|+..+.+.|++. .+.
T Consensus       266 ~~~~~~na~~~a~~L~~~p~v~  287 (403)
T PRK07503        266 MDRHCASAQAVAEWLARHPAVE  287 (403)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcc
Confidence            888899999999999883 443

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.85  E-value=9.5e-20  Score=179.95  Aligned_cols=217  Identities=18%  Similarity=0.198  Sum_probs=151.2

Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217           60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  139 (447)
Q Consensus        60 g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g  139 (447)
                      +++...++|    +.+++++|.+.     .+.++||+.|+..++.++++|||+|++....|++.+...    ...+...|
T Consensus        68 ~~p~~~~le----~~lA~l~g~~~-----al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~----~~~~~~~G  134 (403)
T PRK07810         68 GNPTVSMFE----ERLRLIEGAEA-----CFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVC----NEILPRWG  134 (403)
T ss_pred             CCchHHHHH----HHHHHHhCCCc-----EEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHH----HHHHHHcC
Confidence            445577787    57899999874     355699999999999999999999999887666543211    11122334


Q ss_pred             ceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCC
Q 013217          140 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  217 (447)
Q Consensus       140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~  217 (447)
                      .  +++.++.      .|++++++++++ ++++|++.+++||+  ..|+++|+++|+++|+++++|++|+.+...     
T Consensus       135 ~--~v~~vd~------~d~~~l~~ai~~-~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~~-----  200 (403)
T PRK07810        135 V--ETVFVDG------EDLSQWEEALSV-PTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQ-----  200 (403)
T ss_pred             c--EEEEECC------CCHHHHHHhcCc-CceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCccccC-----
Confidence            3  4444332      489999999987 89999998887775  779999999999999999999998766442     


Q ss_pred             CCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHH
Q 013217          218 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY  293 (447)
Q Consensus       218 ~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~  293 (447)
                      .|+. ++|++++|++|+++|..   ||+++++++     .+.+++..... . .|.......++  .+++.+.  .+..+
T Consensus       201 ~~~~~gaDivv~S~tK~l~g~g~~~gG~v~~~~~-----~~~~~l~~~~~-~-~g~~~s~~~a~--l~l~~L~--tl~~R  269 (403)
T PRK07810        201 RGLPLGADVVVYSGTKHIDGQGRVLGGAILGDRE-----YIDGPVQKLMR-H-TGPALSAFNAW--VLLKGLE--TLALR  269 (403)
T ss_pred             ChhhcCCcEEEccCCceecCCcCceeEEEEeChH-----HHHHHHHHHHH-H-hCCCCCHHHHH--HHHhccC--cHHHH
Confidence            2333 68999999999997654   588888773     23333432211 1 12212222222  2344433  36778


Q ss_pred             HHHHHHHHHHHHHHHHH-CCcE
Q 013217          294 QNKVVSNCRALASRLVE-LGYK  314 (447)
Q Consensus       294 ~~~~~~~~~~l~~~L~~-~g~~  314 (447)
                      +++..+++..+++.|++ +++.
T Consensus       270 ~~~~~~~a~~~a~~L~~~p~v~  291 (403)
T PRK07810        270 VRHSNASALRIAEFLEGHPAVR  291 (403)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcc
Confidence            99999999999999987 3443

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=99.85  E-value=5.7e-19  Score=171.09  Aligned_cols=303  Identities=17%  Similarity=0.145  Sum_probs=197.9

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC---CCCCccceeeecCC
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN---LDENKWGVNVQPLS   94 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g---~~~~~~~~~v~~~s   94 (447)
                      +..+.|..++|.  +|+.+++++...+.......||..       ....+.    +.+++.++   .+++    +|.+|+
T Consensus        19 ~~~i~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~Y~~~-------~~~~Lr----~aia~~~~~~~~~~~----~i~it~   83 (335)
T PRK14808         19 RDRTYLALNENPFPFPEDLVDEVFRRLNSDTLRIYYDS-------PDEELI----EKILSYLDTDFLSKN----NVSVGN   83 (335)
T ss_pred             CceeEecCCCCCCCCCHHHHHHHHHHhhhhhhhcCCCC-------ChHHHH----HHHHHHhCCCCCCcc----eEEEcC
Confidence            466899888885  478899988765533111112221       123444    34555555   6665    455689


Q ss_pred             cH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEE
Q 013217           95 GS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI  173 (447)
Q Consensus        95 Gs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~kli  173 (447)
                      |+ +++..++.++    |+|++.+|.|.++..        .+...|.  +++.++.++ ++.+|...    + . ++++|
T Consensus        84 Ga~~~i~~~~~~~----d~v~v~~P~y~~~~~--------~~~~~g~--~~~~v~~~~-~~~~~~~~----~-~-~~~~i  142 (335)
T PRK14808         84 GADEIIYVMMLMF----DRSVFFPPTYSCYRI--------FAKAVGA--KFLEVPLTK-DLRIPEVN----V-G-EGDVV  142 (335)
T ss_pred             CHHHHHHHHHHHh----CcEEECCCCHHHHHH--------HHHHcCC--eEEEecCCC-cCCCChhH----c-c-CCCEE
Confidence            98 8888888777    789999988766532        3345565  555665653 35555332    2 2 57899


Q ss_pred             EEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC--cccEEEeCCCcccC--CCCCceEEeecC
Q 013217          174 IAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLR--GPRGGMIFFKKD  247 (447)
Q Consensus       174 i~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~--~~Di~~~s~~K~l~--Gp~gG~i~~~~~  247 (447)
                      +++.++||+  ..+.+++.+++ ++++++++|+++. .+.... ....+.  ..-+++.|++|+++  |.|.|++++++ 
T Consensus       143 ~i~nP~NPTG~~~s~~~l~~l~-~~~~~ii~DE~Y~-~f~~~~-~~~~~~~~~~vi~~~S~SK~~~l~GlRvG~~v~~~-  218 (335)
T PRK14808        143 FIPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYY-EFHGES-YVDLLKKYENLAVIRTFSKAFSLAAQRIGYVVSSE-  218 (335)
T ss_pred             EEeCCCCCCCCCcCHHHHHHHH-hcCCEEEEECchh-hhcCCc-hHHHHHhCCCEEEEEechhhccCcccceEEEEeCH-
Confidence            999899986  77889999998 5799999999963 332111 111111  12377899999874  88889999987 


Q ss_pred             CcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEe
Q 013217          248 PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLV  327 (447)
Q Consensus       248 ~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v  327 (447)
                           ++.+.+.....+.  +. +.....+...++...  ..+++..+.+.++++.+.+.|.+.|+++..+  +..++|+
T Consensus       219 -----~~~~~l~~~~~~~--~~-~~~~q~a~~~~l~~~--~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~--~g~f~~~  286 (335)
T PRK14808        219 -----KFIDAYNRVRLPF--NV-SYVSQMFAKVALDHR--EIFEERTKFIVEERERMKSALREMGYRITDS--RGNFVFI  286 (335)
T ss_pred             -----HHHHHHHHhcCCC--CC-CHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHHHHHHHHCCCEECCC--CCeEEEE
Confidence                 7777776544332  22 222223334455421  2346667777888888999999888876543  3456677


Q ss_pred             cCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217          328 DLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       328 ~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~  393 (447)
                      .+..  .+..++.+.|.++||.|+..          ..++||+...       .++++++.++|++
T Consensus       287 ~l~~--~~~~~~~~~l~~~Gi~V~~~----------~~~~Risi~~-------~~~~~~~~~~l~~  333 (335)
T PRK14808        287 FMEK--EEKERLLEHLRAKNIAVRSF----------REGVRITIGK-------REENDMILKELEV  333 (335)
T ss_pred             eCCC--ccHHHHHHHHHHCCeEEEEC----------CCCeEEecCC-------HHHHHHHHHHHHh
Confidence            7652  34577888999999999731          2479998543       7899999988864

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.85  E-value=2.5e-19  Score=173.53  Aligned_cols=301  Identities=13%  Similarity=0.074  Sum_probs=191.9

Q ss_pred             cCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-HHH
Q 013217           21 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PAN   99 (447)
Q Consensus        21 ~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a~   99 (447)
                      +.|.|..+||+..+     ..  ..++    ||..      . .+++.    +.+++.+|.++.    +|.+++|+ +++
T Consensus        17 ~~i~l~~Nenp~~~-----~~--~~~~----Yp~~------~-~~~lr----~~ia~~~~~~~~----~I~it~Gs~~~l   70 (332)
T PRK06425         17 RIIDFSANINDFMD-----IG--DISI----YPEI------S-YTDIE----DQIKIYTQGLKI----KVLIGPGLTHFI   70 (332)
T ss_pred             CEEEeccccCCCcC-----hh--hccc----CcCc------C-HHHHH----HHHHHHhCCCcc----eEEECCCHHHHH
Confidence            45899999998741     00  0122    3332      1 23343    578889999875    45669998 787


Q ss_pred             HHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCC
Q 013217          100 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA  179 (447)
Q Consensus       100 ~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~  179 (447)
                      ..++. +++||+ |++.+|.|+.+.        ..+...|.  ++++++++.  ..+|.+.++    ..++|+|+++.|+
T Consensus        71 ~~~~~-~~~~~~-vv~~~P~y~~y~--------~~~~~~G~--~v~~vp~~~--~~~~~~~l~----~~~~k~v~l~nP~  132 (332)
T PRK06425         71 YRLLS-YINVGN-IIIVEPNFNEYK--------GYAFTHGI--RISALPFNL--INNNPEILN----NYNFDLIFIVSPD  132 (332)
T ss_pred             HHHHH-HhCCCc-EEEeCCChHHHH--------HHHHHcCC--eEEEEeCCc--ccCcHHHHh----hcCCCEEEEeCCC
Confidence            77775 578875 666687766543        23345565  555555652  345655544    2389999998889


Q ss_pred             CCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC---Cc--ccEEEeCCCccc--CCCCCceEEeecC
Q 013217          180 YPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KY--CDVVTTTTHKSL--RGPRGGMIFFKKD  247 (447)
Q Consensus       180 ~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~---~~--~Di~~~s~~K~l--~Gp~gG~i~~~~~  247 (447)
                      ||+  ..+   +++|.++|+++|+++|+|+++ ..+...+ .++..   +.  --+++.|++|++  +|.|.||++.++ 
T Consensus       133 NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y-~~~~~~~-~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~~-  209 (332)
T PRK06425        133 NPLGNLISRDSLLTISEICRKKGALLFIDEAF-IDFVPNR-AEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDD-  209 (332)
T ss_pred             CCcCCccCHHHHHHHHHHHHHcCCEEEEecch-hcccccc-chhHHHHhccCCCEEEEeecHHhcCCchhhheeeecCH-
Confidence            986  555   567777889999999999984 4443322 11111   11  237789999975  588889999987 


Q ss_pred             CcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhH-HHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEE
Q 013217          248 PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF-KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVL  326 (447)
Q Consensus       248 ~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~  326 (447)
                           ++.+.+.....+...   +.....    ++.......+ ++..+.+.++++.+.+.|.+.|+++..++ ...++|
T Consensus       210 -----~li~~l~~~~~~~~~---~~~~~~----~l~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~-~g~f~~  276 (332)
T PRK06425        210 -----YNMKISRKITEPWSV---CDPAID----FIRSIDLDYVAKHSLDIMENERSYLINNLEAMGFRAAGDP-SANFIT  276 (332)
T ss_pred             -----HHHHHHHHcCCCCcc---CHHHHH----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCC-CceEEE
Confidence                 777777664333211   111111    1221111222 45577788888999999998888775432 344567


Q ss_pred             ecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          327 VDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       327 v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      +.+.    +..++.+.|.++||.+..+...+   ...++++|+++.   +    .++++++.++|++++
T Consensus       277 ~~~~----~~~~~~~~l~~~gi~v~~~~~f~---~~~~~~iRis~~---~----~~~~~~l~~al~~~~  331 (332)
T PRK06425        277 FMIP----DAHDFYSYLLKNGILVRLLDDYE---CLGEQYIRIAIR---R----RSFNIKLVNALRNFL  331 (332)
T ss_pred             EEcC----CHHHHHHHHHHCCeEEEECCCCC---CCCCCEEEEEeC---C----HHHHHHHHHHHHHHh
Confidence            7663    46778888888999996542111   112468999864   3    789999999998765

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.85  E-value=2.6e-19  Score=180.65  Aligned_cols=306  Identities=17%  Similarity=0.145  Sum_probs=190.6

Q ss_pred             hHHHHHHHHHHHHHHHHcCCCC------------CccceeeecCCcHHHHHHHHHHh----cC-----------------
Q 013217           62 EYIDELETLCQKRALAAFNLDE------------NKWGVNVQPLSGSPANFEVYTAI----LK-----------------  108 (447)
Q Consensus        62 ~~~~~le~~~~~~~~~~~g~~~------------~~~~~~v~~~sGs~a~~~~~~al----~~-----------------  108 (447)
                      +...++|+.+.+|++++++..+            ..+  -+.+++||.||+.++.+-    +.                 
T Consensus       125 pa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~--G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~  202 (522)
T TIGR03799       125 KAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSL--GAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAAL  202 (522)
T ss_pred             cchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCC--eEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhh
Confidence            3456899999999999985321            122  233456678988876653    11                 


Q ss_pred             -----CCCEEEEecCCCCcccCCCccccccccccccce-eEEEecccCCCCCCCCHHHHHHHhhh---hCCcEEEEc---
Q 013217          109 -----PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDESTGLVDYDMLEKTAIL---FRPKLIIAG---  176 (447)
Q Consensus       109 -----pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~id~~~l~~~~~~---~~~klii~~---  176 (447)
                           ++..|++++.+|.+..        +.+...|.+ .+++.+++| +++.+|+++|++++++   .+++.+++.   
T Consensus       203 ~~~~~~~~~v~~S~~~H~S~~--------kaa~~lglg~~~v~~vp~d-~~g~~d~~~L~~~i~~~~~~g~~~~~vvata  273 (522)
T TIGR03799       203 KHYGYDGLAILVSERGHYSLG--------KAADVLGIGRDNLIAIKTD-ANNRIDVDALRDKCAELAEQNIKPLAIVGVA  273 (522)
T ss_pred             hhccCCceEEEECCCchHHHH--------HHHHHcCCCcccEEEEEeC-CCCcCCHHHHHHHHHHHHHCCCCcEEEEEEe
Confidence                 2346777766665542        223344432 144555676 5689999999998863   244444333   


Q ss_pred             CC-CCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCC---CCCCcccEEEeCCCcccCCCCC-ceEEeecCCcch
Q 013217          177 AS-AYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA---DPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLG  251 (447)
Q Consensus       177 ~~-~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~---~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~  251 (447)
                      .+ ..+...|+++|+++|+++|+|+++|+||+.+.+..+.+.   ..+..+|.+++++|||+.+|.| |+++++++    
T Consensus       274 Gtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llvr~~----  349 (522)
T TIGR03799       274 GTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKDP----  349 (522)
T ss_pred             cCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEEeCH----
Confidence            12 233388999999999999999999999876554333111   1123589999999999999999 99999874    


Q ss_pred             hhHHHHhhhc---c---------CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEeeeC
Q 013217          252 VELESAINNA---V---------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSG  318 (447)
Q Consensus       252 ~~~~~~i~~~---~---------~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~  318 (447)
                       .+.+.+...   .         ..+..|+.+... ..++.+++.+...++++..++..+.++++.+.|.+ .+++++.+
T Consensus       350 -~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~a-l~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~  427 (522)
T TIGR03799       350 -ALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMA-MLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFELVTE  427 (522)
T ss_pred             -HHHHHhccCcchhcCCCCCccccceeecCcchHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEecC
Confidence             333332220   0         011234444433 35888999988889999999999999999999987 68999875


Q ss_pred             CCCCeeEEecCCCCCCC--------------H-------HHHHHHHhhcCeE-EccCCCCCCC-CCCCCCeEEEecC-cc
Q 013217          319 GSDNHLVLVDLRPMGID--------------G-------ARVEKILDMASIT-LNKNSVPGDK-SALVPGGIRIGSP-AM  374 (447)
Q Consensus       319 ~~~~~~~~v~~~~~~~~--------------~-------~~~~~~L~~~gI~-v~~~~~p~~~-~~~~~~~iRig~~-~~  374 (447)
                      +. -.++.+.+.+.++.              .       ..+.+.+.+.|.. ++...+.... .......+|+.+. ..
T Consensus       428 p~-l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~~~~np~  506 (522)
T TIGR03799       428 PE-LCLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRVVLANPL  506 (522)
T ss_pred             CC-ccEEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEEEecCCC
Confidence            32 33333333332210              0       2355555666654 3322111100 0011235999753 44


Q ss_pred             ccCCCCHHHHHHHHH
Q 013217          375 TTRGFSEKEFVAIAD  389 (447)
Q Consensus       375 ~~~g~~~~di~~l~~  389 (447)
                      |+    ++|++.+.+
T Consensus       507 tt----~~~i~~~l~  517 (522)
T TIGR03799       507 TT----HEILQDILD  517 (522)
T ss_pred             CC----HHHHHHHHH
Confidence            55    888887654

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PLN02263 serine decarboxylase

Probab=99.85  E-value=6.8e-18  Score=165.96  Aligned_cols=290  Identities=13%  Similarity=0.062  Sum_probs=192.8

Q ss_pred             HHHHHHHHHHHHHHHcCCCCC-ccceeeecCCcHHHHHHHHHHhcC--CCCEEEEecCCCCcccCCCccccccccccccc
Q 013217           64 IDELETLCQKRALAAFNLDEN-KWGVNVQPLSGSPANFEVYTAILK--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI  140 (447)
Q Consensus        64 ~~~le~~~~~~~~~~~g~~~~-~~~~~v~~~sGs~a~~~~~~al~~--pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~  140 (447)
                      ..++|+.+.+|+++++|.+++ .|+  +.+++||++|+.++.+-.+  +...++++.-.|.+.        .+.+.+.|.
T Consensus       131 s~~~E~~Vi~wla~L~g~p~~~~~G--~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv--------~KAa~llgi  200 (470)
T PLN02263        131 SRQFEVGVLDWFARLWEIEKNEYWG--YITNCGTEGNLHGILVGREVFPDGILYASRESHYSV--------FKAARMYRM  200 (470)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCeE--EEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHH--------HHHHHhcCC
Confidence            568999999999999999864 454  2346667999888776532  334555555444332        145566676


Q ss_pred             eeEEEecccCCCCCCCCHHHHHHHhhhhC--CcEEEEcC--CCCCCCCChHHHHHHHHHhCC-----EEEEehhhhcccc
Q 013217          141 YFESMPYRLDESTGLVDYDMLEKTAILFR--PKLIIAGA--SAYPRDFDYPRMRQIADAVGA-----LLMMDMAHISGLV  211 (447)
Q Consensus       141 ~~~~~~~~~~~~~~~id~~~l~~~~~~~~--~klii~~~--~~~~~~~~~~~i~~ia~~~g~-----~livD~a~~~g~~  211 (447)
                      .  ++.++++ +++.+|+++|++++.+..  |-+|+.+.  ...+...|+++|.++|+++|+     |++||+|.+...+
T Consensus       201 ~--~~~Vp~d-~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~l  277 (470)
T PLN02263        201 E--CVKVDTL-VSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMM  277 (470)
T ss_pred             c--ceEeccC-CCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHh
Confidence            4  4445566 578999999999987633  55565552  223337899999999999997     9999999533333


Q ss_pred             ccccCCCCCC---cccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhh------ccCCCCCCCCcHHHHHHHHHH
Q 013217          212 AASVVADPFK---YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINN------AVFPGLQGGPHNHTIGGLAVC  281 (447)
Q Consensus       212 ~~~~~~~~~~---~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~------~~~~~~~g~p~~~~~aal~~a  281 (447)
                      +.-....+++   .+|.++.++|||+..|.+ |+++++++      ..+.+..      ...++..|+-+....+.++..
T Consensus       278 Pf~~~~~~~df~~~vDSIsvD~HK~l~~P~~cgvll~R~~------~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~~  351 (470)
T PLN02263        278 PFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRME------HINVLSSNVEYLASRDATIMGSRNGHAPIFLWYT  351 (470)
T ss_pred             hhcccccccCCCcCccEEEECCccccCCCcCEEEEEEehh------hHhhhccChHhhCCCCCCcCCCCCcHHHHHHHHH
Confidence            2111111232   389999999999999988 99999973      3222211      112344566555556778888


Q ss_pred             HHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCC
Q 013217          282 LKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSA  361 (447)
Q Consensus       282 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~  361 (447)
                      ++.....++.+.+++..++++++.+.|++.|+..+..+ ....  +.++...   .+    +...|..++..        
T Consensus       352 L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~g~~~~~~p-~s~~--V~f~~p~---~~----~~~~gW~L~~~--------  413 (470)
T PLN02263        352 LNRKGYRGFQKEVQKCLRNAHYLKDRLREAGISAMLNE-LSST--VVFERPK---DE----EFVRRWQLACQ--------  413 (470)
T ss_pred             HHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCC-CceE--EEEecCc---hH----HhhcceEEccC--------
Confidence            99888889999999999999999999999998877643 2332  3333211   11    12356665421        


Q ss_pred             CCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          362 LVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       362 ~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                        +..+++.+..-.+    .+-++++.+-|++...
T Consensus       414 --~~~~Hivvmphv~----~~~id~fi~DL~~~~~  442 (470)
T PLN02263        414 --GNIAHVVVMPSVT----IEKLDYFLKELVEKRS  442 (470)
T ss_pred             --CCcEEEEEcCCCC----HHHHHHHHHHHHHHHh
Confidence              2358887665444    7888888887776655

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=99.85  E-value=1.7e-19  Score=175.72  Aligned_cols=226  Identities=17%  Similarity=0.219  Sum_probs=153.1

Q ss_pred             CCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccc
Q 013217           51 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT  130 (447)
Q Consensus        51 g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~  130 (447)
                      +|...|+  +++...++|    ++++++.|.+.     .+.++||++|+.+++ .+++|||+|+++.+.|++.... + .
T Consensus        45 ~~~Y~R~--~~p~~~~le----~~lA~leg~~~-----~v~~~sG~aAi~~~l-~~l~~GD~VI~~~~~yg~~~~~-~-~  110 (364)
T PRK07269         45 GFDYTRT--KNPTRAKLE----ETLAAIESADY-----ALATSSGMSAIVLAF-SVFPVGSKVVAVRDLYGGSFRW-F-N  110 (364)
T ss_pred             CcceeCC--CCccHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHH-HHhCCCCEEEEecCCcCchHHH-H-H
Confidence            3444443  456677888    57888888764     244578889998888 4679999999998777654310 0 0


Q ss_pred             cccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhc
Q 013217          131 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHIS  208 (447)
Q Consensus       131 ~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~  208 (447)
                         .....+ .+.     +   ++..|++++++++++ +||+|++++++||+  ..|+++|+++|+++|+++++|++++.
T Consensus       111 ---~~~~~~-~~~-----~---~~~~d~~~l~~~i~~-~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~  177 (364)
T PRK07269        111 ---QQEKEG-RFH-----F---TYANTEEELIAAIEE-DTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYS  177 (364)
T ss_pred             ---HHHhcC-cEE-----E---EecCCHHHHHHhcCc-CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcc
Confidence               000000 011     1   234689999999987 89999999888886  67999999999999999999999755


Q ss_pred             cccccccCCCCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHH
Q 013217          209 GLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH  284 (447)
Q Consensus       209 g~~~~~~~~~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~  284 (447)
                      +..     ..|++ ++|++++|+||+++|+.   ||+++++++     ++.+++.....  ..|......-+  +.+++.
T Consensus       178 ~~~-----~~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~-----~l~~~~~~~~~--~~G~~~s~~~a--~l~~~~  243 (364)
T PRK07269        178 PIY-----QRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDL-----ELYEKLFYNLN--TTGAVLSPFDS--YLLMRG  243 (364)
T ss_pred             ccc-----CCchhhCCcEEEecCceeccCCCcccceEEEeCcH-----HHHHHHHHHHH--HhCCCCCHHHH--HHHHcC
Confidence            432     24454 69999999999998865   688888764     66666653221  11211111122  223444


Q ss_pred             hcChhHHHHHHHHHHHHHHHHHHHHHC-Cc-EeeeCC
Q 013217          285 AQSPEFKVYQNKVVSNCRALASRLVEL-GY-KLVSGG  319 (447)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~~  319 (447)
                      +.  .+..++++..+|+..+++.|++. ++ +++.++
T Consensus       244 L~--tL~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg  278 (364)
T PRK07269        244 LK--TLSLRMERSTANAQEVVAFLKKSPAVKEVLYTG  278 (364)
T ss_pred             CC--cHHHHHHHHHHHHHHHHHHHHhCCCccEEeCCC
Confidence            43  36778999999999999999884 44 444343

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.85  E-value=3.2e-19  Score=175.08  Aligned_cols=215  Identities=21%  Similarity=0.198  Sum_probs=151.5

Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217           60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  139 (447)
Q Consensus        60 g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g  139 (447)
                      +++....+|    +++++++|.+.     .+.++||++|+..++.++++|||+|++..+.|++......    ..+...|
T Consensus        38 ~~p~~~~le----~~la~l~g~~~-----a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~----~~~~~~g  104 (369)
T cd00614          38 GNPTVDALE----KKLAALEGGEA-----ALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFE----RLLPKLG  104 (369)
T ss_pred             CChhHHHHH----HHHHHHHCCCC-----EEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHH----HHHhhcC
Confidence            556677887    57888999764     2445899999999999999999999999988776531100    0111233


Q ss_pred             ceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCC
Q 013217          140 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  217 (447)
Q Consensus       140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~  217 (447)
                      .  ++..++.      -|++++++++++ ++++|++.+++||.  ..|+++|.++|+++|+++++|++|+.+..     .
T Consensus       105 ~--~~~~v~~------~d~~~l~~~i~~-~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~-----~  170 (369)
T cd00614         105 I--EVTFVDP------DDPEALEAAIKP-ETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYL-----Q  170 (369)
T ss_pred             e--EEEEeCC------CCHHHHHHhcCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhc-----C
Confidence            3  4444333      268999999977 89999998777775  77999999999999999999999876643     2


Q ss_pred             CCCC-cccEEEeCCCcccCCC---CCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHH
Q 013217          218 DPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY  293 (447)
Q Consensus       218 ~~~~-~~Di~~~s~~K~l~Gp---~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~  293 (447)
                      .|+. ++|++++|++|+++|+   +||+++++++     ++.+++...... ..++.+.. .+  +.+++.+.  .+..+
T Consensus       171 ~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~-----~l~~~l~~~~~~-~g~~~~p~-~a--~~~l~~l~--tl~~r  239 (369)
T cd00614         171 RPLELGADIVVHSATKYIGGHSDVIAGVVVGSGE-----ALIQRLRFLRLA-LGTILSPF-DA--WLLLRGLK--TLPLR  239 (369)
T ss_pred             ChhhhCCcEEEeccceeccCCCCceEEEEEeCcH-----HHHHHHHHHHHh-hCCCCCHH-HH--HHHHcCCC--CHHHH
Confidence            3343 5899999999999875   4799998763     465655543211 11122222 11  22333332  35667


Q ss_pred             HHHHHHHHHHHHHHHHHCC
Q 013217          294 QNKVVSNCRALASRLVELG  312 (447)
Q Consensus       294 ~~~~~~~~~~l~~~L~~~g  312 (447)
                      +++..+|++.+++.|++.+
T Consensus       240 ~~~~~~na~~la~~L~~~~  258 (369)
T cd00614         240 MERHSENALKVAEFLEKHP  258 (369)
T ss_pred             HHHHHHHHHHHHHHHHcCC
Confidence            8999999999999998853

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PRK07050 cystathionine beta-lyase; Provisional

Probab=99.84  E-value=2.4e-19  Score=176.70  Aligned_cols=298  Identities=16%  Similarity=0.067  Sum_probs=188.8

Q ss_pred             CCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccc
Q 013217           51 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT  130 (447)
Q Consensus        51 g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~  130 (447)
                      +|...||  +++....+|    +++++++|.+.     .+.+.||++|+.+++.++++|||+|++.++.|++......  
T Consensus        56 ~~~Y~r~--~~pt~~~Le----~~lA~l~g~~~-----~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~--  122 (394)
T PRK07050         56 QWRYGLH--ATPTSLALA----QRLAEIEGGRH-----ALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGE--  122 (394)
T ss_pred             CcccCCC--CCHHHHHHH----HHHHHHhCCCe-----EEEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHH--
Confidence            3444443  556677777    57889999764     2344777899999999999999999999998876532110  


Q ss_pred             cccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhc
Q 013217          131 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHIS  208 (447)
Q Consensus       131 ~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~  208 (447)
                        ......|.  ++..++.      .|.+++++++++ +||+|+++.++||.  ..|+++|.++|+++|+++++|++|..
T Consensus       123 --~~~~~~Gi--~v~~vd~------~~~~~l~~~i~~-~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~  191 (394)
T PRK07050        123 --WLARDFGI--TVRFYDP------LIGAGIADLIQP-NTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSA  191 (394)
T ss_pred             --HHHHhcCe--EEEEECC------CCHHHHHHhcCC-CCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCccc
Confidence              01122343  4444332      145788888877 89999998888775  67999999999999999999999877


Q ss_pred             cccccccCCCCCC-cccEEEeCCCcccCCC---CCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHH
Q 013217          209 GLVAASVVADPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH  284 (447)
Q Consensus       209 g~~~~~~~~~~~~-~~Di~~~s~~K~l~Gp---~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~  284 (447)
                      |...     .|+. ++|+++.|++|++.|.   .||+++++++     ++.+++........ ++...  ..+ ..+++.
T Consensus       192 ~~~~-----~~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~-----~~~~~~~~~~~~~G-~~~~~--~~a-~l~lr~  257 (394)
T PRK07050        192 GLAF-----KPFEHGVDISVQALTKYQSGGSDVLMGATITADA-----ELHAKLKLARMRLG-IGVSA--DDC-SLVLRG  257 (394)
T ss_pred             cccc-----CHHHcCCeEEEEECCceecCCCCeeEEEEEECCH-----HHHHHHHHHHHhcC-CCCCH--HHH-HHHHcC
Confidence            6542     2333 5899999999999754   3687877664     67776654322111 11121  111 234443


Q ss_pred             hcChhHHHHHHHHHHHHHHHHHHHHH-CCcE-eeeCC---------------CCCeeEEecCCCCCC---CHHHHHHHHh
Q 013217          285 AQSPEFKVYQNKVVSNCRALASRLVE-LGYK-LVSGG---------------SDNHLVLVDLRPMGI---DGARVEKILD  344 (447)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~-~~~~~---------------~~~~~~~v~~~~~~~---~~~~~~~~L~  344 (447)
                      +.  .+..++++..+++..+++.|++ +++. +..++               ...+++.+.+.. +.   +..++.+.|+
T Consensus       258 l~--tl~~Rl~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~-~~~~~~~~~~~~~l~  334 (394)
T PRK07050        258 LP--SLQVRLAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDE-RYSPAQVDAFVEALE  334 (394)
T ss_pred             CC--cHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECC-CCCHHHHHHHHHcCC
Confidence            33  3666889999999999999987 3443 22111               012333344432 11   2344555666


Q ss_pred             hcCeEEccCC-----CCCCC-------CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          345 MASITLNKNS-----VPGDK-------SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       345 ~~gI~v~~~~-----~p~~~-------~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      ..++.++.+.     .|...       .+..++-||+|.+        -||.+.|.+-|.+++..
T Consensus       335 ~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~iR~svG--------lE~~~dl~~dl~~al~~  391 (394)
T PRK07050        335 LFAIGWSWGGACSLAMPYDVASMRTAKWPHRGTLVRLYIG--------LEDEADLIADLEQALEA  391 (394)
T ss_pred             CCeeccccCCccceEeeCcccccchhhcCCCCCEEEEEeC--------cCCHHHHHHHHHHHHHH
Confidence            6677666532     12210       0112246899876        35666677777666653

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.84  E-value=2.6e-19  Score=176.12  Aligned_cols=220  Identities=22%  Similarity=0.252  Sum_probs=151.4

Q ss_pred             CCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccc
Q 013217           51 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT  130 (447)
Q Consensus        51 g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~  130 (447)
                      ++...||  +++....+|    +.+++++|++.     .+.++||+.|+.+++.+++++||+|++..+.|++.+....  
T Consensus        45 ~~~y~r~--~~p~~~~le----~~la~l~g~~~-----~~~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~--  111 (380)
T TIGR01325        45 GFVYSRY--ANPTVAAFE----ERIAALEGAER-----AVATATGMSAIQAALMTLLQAGDHVVASRSLFGSTVGFIS--  111 (380)
T ss_pred             CcceecC--CCchHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEecCCcchHHHHHH--
Confidence            4444454  345566776    57889999864     2446899999999999999999999998877766432110  


Q ss_pred             cccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhc
Q 013217          131 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHIS  208 (447)
Q Consensus       131 ~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~  208 (447)
                        ..+...|.  ++..++.      .|++++++++++ +|++|+++.++||.  ..|+++|.++|+++|+++++|+++..
T Consensus       112 --~~~~~~g~--~v~~v~~------~d~~~l~~~i~~-~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~  180 (380)
T TIGR01325       112 --EILPRFGI--EVSFVDP------TDLNAWEAAVKP-NTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFAT  180 (380)
T ss_pred             --HHHHHhCC--EEEEECC------CCHHHHHHhcCC-CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcc
Confidence              11122343  4444332      278999998876 89999998887775  77999999999999999999999865


Q ss_pred             cccccccCCCCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHH
Q 013217          209 GLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH  284 (447)
Q Consensus       209 g~~~~~~~~~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~  284 (447)
                      +..     ..|+. ++|++++|+||+++|+.   ||+++.++      ++.+.+.......  |.......+  +.+++.
T Consensus       181 ~~~-----~~pl~~g~Divv~S~sK~l~g~g~~~gG~vv~~~------~~~~~l~~~~~~~--g~~~~p~~a--~~~l~~  245 (380)
T TIGR01325       181 PVL-----QQPLKLGADVVVYSATKHIDGQGRVMGGVIAGSE------ELMAEVAVYLRHT--GPAMSPFNA--WVLLKG  245 (380)
T ss_pred             ccc-----CCchhhCCCEEEeeccceecCCCCeEEEEEEeCH------HHHHHHHHHHHhh--CCCCCHHHH--HHHHhc
Confidence            432     22343 58999999999998753   48888777      5666555432211  221111111  223443


Q ss_pred             hcChhHHHHHHHHHHHHHHHHHHHHHC
Q 013217          285 AQSPEFKVYQNKVVSNCRALASRLVEL  311 (447)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~l~~~L~~~  311 (447)
                      +.  .+..++++..++++.+++.|++.
T Consensus       246 l~--tl~~r~~~~~~~a~~la~~L~~~  270 (380)
T TIGR01325       246 LE--TLSLRMQKQFDSALAIAEWLQAQ  270 (380)
T ss_pred             cC--cHHHHHHHHHHHHHHHHHHHHcC
Confidence            32  35667899999999999999884

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PTZ00376 aspartate aminotransferase; Provisional

Probab=99.84  E-value=5.7e-19  Score=175.70  Aligned_cols=289  Identities=17%  Similarity=0.217  Sum_probs=172.7

Q ss_pred             HHHHHHHHHHHHHHHcC--CCCCccceeeecCCcH-HHHHHHH---HHhcCCCCEEEEecCCCCcccCCCcccccccccc
Q 013217           64 IDELETLCQKRALAAFN--LDENKWGVNVQPLSGS-PANFEVY---TAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSG  137 (447)
Q Consensus        64 ~~~le~~~~~~~~~~~g--~~~~~~~~~v~~~sGs-~a~~~~~---~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~  137 (447)
                      ..++.+.+.+++.+..+  ++++++  .+..++|+ +|+..++   .++++|||+|++.+|.|+++..        .+..
T Consensus        74 ~~~lR~aia~~~~~~~~~~~~~~~v--~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~--------~~~~  143 (404)
T PTZ00376         74 LQSFIEAAQKLLFGEASYALAEKRI--ATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVN--------IFKS  143 (404)
T ss_pred             CHHHHHHHHHHhcCCCccccccCeE--EEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHH--------HHHH
Confidence            34454444455544333  344432  11124454 6666554   4678999999999998877642        3345


Q ss_pred             ccceeEEEecccC-CCCCCCCHHHHHHHhhhh--CCcEEEEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhcc
Q 013217          138 TSIYFESMPYRLD-ESTGLVDYDMLEKTAILF--RPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISG  209 (447)
Q Consensus       138 ~g~~~~~~~~~~~-~~~~~id~~~l~~~~~~~--~~klii~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g  209 (447)
                      .|.  +++++++. ++++.+|++.+++.++..  ++++++++.++||+  ..   .+++|.++|++||+++++|+++ .+
T Consensus       144 ~G~--~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y-~~  220 (404)
T PTZ00376        144 AGL--NVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAY-QG  220 (404)
T ss_pred             cCC--ceeeccccCcccCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhh-cC
Confidence            554  55566663 245789999999988642  34667778888886  33   4578888999999999999984 45


Q ss_pred             cccccc--CCCCC---C-c--ccEEEeCCCccc--CCCCCceEE---eecCCcchhhHHHHh----hhccCCCCCCCCcH
Q 013217          210 LVAASV--VADPF---K-Y--CDVVTTTTHKSL--RGPRGGMIF---FKKDPVLGVELESAI----NNAVFPGLQGGPHN  272 (447)
Q Consensus       210 ~~~~~~--~~~~~---~-~--~Di~~~s~~K~l--~Gp~gG~i~---~~~~~~~~~~~~~~i----~~~~~~~~~g~p~~  272 (447)
                      +.+.+.  ...++   . .  .-+++.|++|++  +|+|.||++   .++      ++.+.+    ....... .++++.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRvG~~~~~~~~~------~~~~~l~~~~~~~~~~~-~~~~~~  293 (404)
T PTZ00376        221 FASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERIGALHIVCANK------EEAANVLSQLKLIIRPM-YSSPPI  293 (404)
T ss_pred             ccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcccccccccceEEEEeCCH------HHHHHHHHHHHHHHhhh-cCCCch
Confidence            544321  00001   1 1  237889999986  489999984   343      443332    2211111 122232


Q ss_pred             HHHHHHHHHHHHhc--C---hhHHHHHHHHHHHHHHHHHHHHHCC----cEeeeCCCCCeeEEecCCCCCCCHHHHHHHH
Q 013217          273 HTIGGLAVCLKHAQ--S---PEFKVYQNKVVSNCRALASRLVELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKIL  343 (447)
Q Consensus       273 ~~~aal~~al~~~~--~---~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L  343 (447)
                      ....+...+++.-.  .   ...++..+++.++++.+.+.|.+.+    +.+..+ ..+.++|+.+.     .+.+..++
T Consensus       294 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~p-~gg~f~~~~~~-----~~~~~~L~  367 (404)
T PTZ00376        294 HGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKALGSPGDWEHIIN-QIGMFSFTGLT-----KEQVERLI  367 (404)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccc-CceEEEecCCC-----HHHHHHHH
Confidence            22223333342210  0   0123345567788888999998864    333322 34566677652     34445555


Q ss_pred             hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          344 DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       344 ~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      +++||.+    +|+        + |+++...     +.++++++++.|++++.
T Consensus       368 ~~~~v~v----~p~--------~-Ris~~~~-----~~~~~~~~~~~l~~~~~  402 (404)
T PTZ00376        368 EKYHIYL----LDN--------G-RISVAGL-----TSKNVDYVAEAIHDVVR  402 (404)
T ss_pred             HhCCEee----cCC--------C-eEEEecc-----CHHhHHHHHHHHHHHHh
Confidence            6679998    342        2 8886433     37999999999998875

>PLN02397 aspartate transaminase

Probab=99.84  E-value=5.9e-19  Score=176.19  Aligned_cols=265  Identities=20%  Similarity=0.237  Sum_probs=167.1

Q ss_pred             cCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEeccc-CCCCCCCCHHHHHHHhhh--h
Q 013217           92 PLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-DESTGLVDYDMLEKTAIL--F  168 (447)
Q Consensus        92 ~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~id~~~l~~~~~~--~  168 (447)
                      .++|+.++...+.+++.|||+|++.+|.|+.+..        .+...|.  +++++++ +++++.+|++.+++.+..  .
T Consensus       124 ~g~Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~--------~~~~~g~--~~~~v~l~~~~~~~~d~~~l~~~l~~~~~  193 (423)
T PLN02397        124 SGTGSLRLGAEFLARFYPGSTIYIPNPTWGNHHN--------IFRDAGV--PVRTYRYYDPKTRGLDFDGLLEDLKAAPD  193 (423)
T ss_pred             cchHHHHHHHHHHHHhCCCCEEEEeCCCchhHHH--------HHHHcCC--eEEEeecccCcCCccCHHHHHHHHHhCCC
Confidence            3444444555666667799999999998877642        2345554  5555555 234578999999887763  2


Q ss_pred             CCcEEEEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhcccccccc---CCC--CCC--c-ccEEEeCCCccc-
Q 013217          169 RPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASV---VAD--PFK--Y-CDVVTTTTHKSL-  234 (447)
Q Consensus       169 ~~klii~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~---~~~--~~~--~-~Di~~~s~~K~l-  234 (447)
                      ++++++++.++||+  ..   .+++|.++|++||+++|+|+++ .++.+.+.   .+.  .+.  + .-+++.|++|++ 
T Consensus       194 ~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y-~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~  272 (423)
T PLN02397        194 GSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAY-QGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMG  272 (423)
T ss_pred             CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccc-CCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCC
Confidence            56777778888886  43   4578888999999999999994 66654321   111  011  1 136789999996 


Q ss_pred             -CCCCCceEE--eecCCcchhhHHH----HhhhccCCCCCCCCcHHHHHHHHHHHHHh--cC---hhHHHHHHHHHHHHH
Q 013217          235 -RGPRGGMIF--FKKDPVLGVELES----AINNAVFPGLQGGPHNHTIGGLAVCLKHA--QS---PEFKVYQNKVVSNCR  302 (447)
Q Consensus       235 -~Gp~gG~i~--~~~~~~~~~~~~~----~i~~~~~~~~~g~p~~~~~aal~~al~~~--~~---~~~~~~~~~~~~~~~  302 (447)
                       +|+|.||++  ..+.     ++.+    .+.........+ ++.....+.+.++..-  ..   ..+++..+++.++++
T Consensus       273 ~~G~RvG~~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~  346 (423)
T PLN02397        273 LYGERVGALSVVCKSA-----DVAVRVKSQLKLIARPMYSN-PPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQ  346 (423)
T ss_pred             CccccceEEEEEeCCH-----HHHHHHHHHHHHHHhcccCC-CcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence             499999985  3221     3322    232222111222 2322223333233210  00   113556678888999


Q ss_pred             HHHHHHHHCC----cEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCC
Q 013217          303 ALASRLVELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRG  378 (447)
Q Consensus       303 ~l~~~L~~~g----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g  378 (447)
                      .+.+.|++.|    +++..+ ...++.|+++.     .+.+.++|+++||.+..            ++ |+++...    
T Consensus       347 ~l~~~L~~~~~~~~~~~~~p-~gg~fl~~~l~-----~~~~~~Ll~~~~V~v~~------------~~-Ri~~~~~----  403 (423)
T PLN02397        347 KLYDALEARGSPGDWSHITK-QIGMFSFTGLN-----KEQVDRMTKEYHIYMTR------------DG-RISMAGL----  403 (423)
T ss_pred             HHHHHHHhcCCCCCCCcccC-CceEEEecCCC-----HHHHHHHHHhCCEEECC------------CC-eEEEeeC----
Confidence            9999999876    654433 35677777763     35566667889999831            13 8876433    


Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q 013217          379 FSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       379 ~~~~di~~l~~~i~~~l~~  397 (447)
                       ++++++++++.|++++.+
T Consensus       404 -~~~~i~~~~~~i~~~~~~  421 (423)
T PLN02397        404 -SSKNVPYLADAIHAVVTN  421 (423)
T ss_pred             -CHHHHHHHHHHHHHHHhc
Confidence             378999999999999863

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.84  E-value=3.4e-19  Score=176.82  Aligned_cols=191  Identities=17%  Similarity=0.161  Sum_probs=132.0

Q ss_pred             EecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHH
Q 013217           25 LIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYT  104 (447)
Q Consensus        25 l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~  104 (447)
                      +..+.+|..+.+.+++... ..+ ..+|...|+  +++..+.+|    +.+++++|.+.     .|.++||+.|+.+++.
T Consensus        36 i~~sstf~~~~~~~~~~~~-~~~-~~~~~Y~r~--~~pt~~~le----~~la~l~g~~~-----~v~fsSG~~Ai~~al~  102 (437)
T PRK05613         36 IYQTTSYVFDSAEHAKQRF-ALE-DLGPIYSRL--TNPTVEALE----NRIASLEGGVH-----AVAFASGQAAETAAIL  102 (437)
T ss_pred             EeCCCCcccCCHHHHHHhh-ccc-cCCceeeCc--cChHHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHH
Confidence            4455566656665554322 111 123333332  456667777    68889999864     4556999999999999


Q ss_pred             HhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--
Q 013217          105 AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--  182 (447)
Q Consensus       105 al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--  182 (447)
                      +++++||+|++++..|++......    ..+...|  +++..++ ++    .|++++++++++ +|++|++..+.|+.  
T Consensus       103 ~ll~~Gd~VI~~~~~y~~t~~~~~----~~l~~~G--i~v~~vd-~~----~d~e~l~~~l~~-~tk~V~~e~~~Np~~~  170 (437)
T PRK05613        103 NLAGAGDHIVTSPRLYGGTETLFL----VTLNRLG--IEVTFVE-NP----DDPESWQAAVQP-NTKAFFGETFANPQAD  170 (437)
T ss_pred             HhcCCCCEEEECCCccHHHHHHHH----HHHHhcC--eEEEEEC-CC----CCHHHHHHhCCc-cCeEEEEECCCCCCCc
Confidence            999999999999888887632110    0112234  3555543 21    289999999987 89998887655553  


Q ss_pred             CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-cccEEEeCCCcccCCCC---CceEEee
Q 013217          183 DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFK  245 (447)
Q Consensus       183 ~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~  245 (447)
                      ..|+++|+++|+++|+++++|++|+.|...     .|+. ++|++++|+||+++|+.   ||+++.+
T Consensus       171 v~di~~I~~la~~~gi~livD~t~a~g~~~-----~p~~~GaDivv~S~~K~l~G~gd~~gG~vv~~  232 (437)
T PRK05613        171 VLDIPAVAEVAHRNQVPLIVDNTIATAALV-----RPLELGADVVVASLTKFYTGNGSGLGGVLIDG  232 (437)
T ss_pred             ccCHHHHHHHHHHcCCeEEEECCCcccccc-----ChHHhCCCEEEeeccceecCCCcceeEEEEec
Confidence            789999999999999999999998776542     2333 69999999999997764   4666644

>PRK09028 cystathionine beta-lyase; Provisional

Probab=99.84  E-value=5.5e-19  Score=172.80  Aligned_cols=212  Identities=15%  Similarity=0.115  Sum_probs=146.0

Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217           60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  139 (447)
Q Consensus        60 g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g  139 (447)
                      +++....+|    +.++++.|.+.     .+.++||++|+.+++.++++|||+|+++++.|++......    ..+...|
T Consensus        59 ~npt~~~Le----~~iA~le~~~~-----~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~----~~l~~~G  125 (394)
T PRK09028         59 GTPTHFAFQ----AAIVELEGGAG-----TALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCD----KILKGFG  125 (394)
T ss_pred             CCchHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHH----Hhhhhcc
Confidence            344456776    56777777653     2345788899999999999999999999988866532100    0111223


Q ss_pred             ceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCC
Q 013217          140 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  217 (447)
Q Consensus       140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~  217 (447)
                      .  ++..++.      .|.+++++++++ +||+|++++++||+  ..|+++|+++|+++|+++++|++|+.+..     .
T Consensus       126 i--~v~~v~~------~~~e~l~~~l~~-~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~-----~  191 (394)
T PRK09028        126 I--ETTYYDP------MIGEGIRELIRP-NTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPIN-----S  191 (394)
T ss_pred             e--EEEEECC------CCHHHHHHhcCc-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCcccccc-----C
Confidence            2  3333221      256889988877 89999999888886  77999999999999999999999876532     3


Q ss_pred             CCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhcc-CCCCCCCCcHHHHHHHHHHHHHhcChhHHH
Q 013217          218 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAV-FPGLQGGPHNHTIGGLAVCLKHAQSPEFKV  292 (447)
Q Consensus       218 ~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~-~~~~~g~p~~~~~aal~~al~~~~~~~~~~  292 (447)
                      .|+. ++|+++.|+|||++|+.   +|+++.++      ++.+++.... ..|.  ..+...   .+..++.+.+  +.-
T Consensus       192 ~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~------~~~~~l~~~~~~~G~--~~~p~~---a~l~~rgl~T--L~l  258 (394)
T PRK09028        192 RPFEMGVDISIQAATKYIVGHSDVMLGTATANE------KHWDQLREHSYLMGQ--CTSPDD---VYLAMRGLRT--LGV  258 (394)
T ss_pred             CccccCceEEEEeCCeEecCCCCEEEEEEECCH------HHHHHHHHHHHhcCC--CCCHHH---HHHHHcccCc--HHH
Confidence            3455 69999999999999985   37665554      5555554321 1121  122221   1223444433  567


Q ss_pred             HHHHHHHHHHHHHHHHHHC
Q 013217          293 YQNKVVSNCRALASRLVEL  311 (447)
Q Consensus       293 ~~~~~~~~~~~l~~~L~~~  311 (447)
                      ++++..+|+..+++.|++.
T Consensus       259 R~~~~~~na~~la~~L~~~  277 (394)
T PRK09028        259 RLAQHEKNALKVANWLATR  277 (394)
T ss_pred             HHHHHHHHHHHHHHHHhcC
Confidence            8999999999999999984

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.84  E-value=1.6e-18  Score=168.31  Aligned_cols=307  Identities=17%  Similarity=0.114  Sum_probs=198.3

Q ss_pred             cCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-H
Q 013217           21 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P   97 (447)
Q Consensus        21 ~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~   97 (447)
                      +.+.|..++|+  .|+.+++++.+.+......+||..    |   ...++    +.+++++|++++    +|.+++|+ +
T Consensus        19 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~----g---~~~lr----~~ia~~~~~~~~----~I~~t~G~~~   83 (337)
T PRK03967         19 YRIWLDKNENPFDLPEELKEEIFEELKRVPFNRYPHI----T---SDPLR----EAIAEFYGLDAE----NIAVGNGSDE   83 (337)
T ss_pred             ceEEecCCCCCCCCCHHHHHHHHHHhhcCccccCCCC----C---HHHHH----HHHHHHhCcCcc----eEEEcCCHHH
Confidence            45788878875  468889888776643212234321    1   23343    567788888875    45568887 7


Q ss_pred             HHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcC
Q 013217           98 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA  177 (447)
Q Consensus        98 a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~  177 (447)
                      ++..++..+  +||+|++.+|.|+.+.        ......|.  ++++++++ +++.+|++++++.. . ++++++++.
T Consensus        84 ~l~~~~~~~--~gd~V~v~~P~y~~~~--------~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~~-~-~~~~v~~~~  148 (337)
T PRK03967         84 LISYLVKLF--EGKHIVITPPTFGMYS--------FYAKLNGI--PVIDVPLK-EDFTIDGERIAEKA-K-NASAVFICS  148 (337)
T ss_pred             HHHHHHHHh--CCCeEEEeCCChHHHH--------HHHHHcCC--eEEEeecC-CCCCcCHHHHHHhc-c-CCCEEEEeC
Confidence            776666555  7999999998876431        11233444  55566665 34689999998865 3 788988888


Q ss_pred             CCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC--cccEEEeCCCccc--CCCCCceEEeecCCcch
Q 013217          178 SAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLG  251 (447)
Q Consensus       178 ~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~--~~Di~~~s~~K~l--~Gp~gG~i~~~~~~~~~  251 (447)
                      ++||+  ..+.++|.++++ +|+++++|+++. .+..... ...+.  .--+++.|++|++  +|.|.||+++++     
T Consensus       149 P~NPtG~~~~~~~l~~i~~-~~~~ii~De~y~-~~~~~~~-~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~-----  220 (337)
T PRK03967        149 PNNPTGNLQPEEEILKVLE-TGKPVVLDEAYA-EFSGKSL-IGLIDEYPNLILLRTFSKAFGLAGIRAGYAIANE-----  220 (337)
T ss_pred             CCCCCCCCCCHHHHHHHHh-cCCEEEEECchh-hhcccch-HHHHhhCCCEEEEecchHhhcchhhhheeeecCH-----
Confidence            88886  778999999995 799999999963 3321110 00011  1237789999986  578889999987     


Q ss_pred             hhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCC
Q 013217          252 VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRP  331 (447)
Q Consensus       252 ~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~  331 (447)
                       ++.+.+.....+.   +.+.....++..+++.  .+.+.+..+.+.++++.+.+.|.+..   ..  +...++|+++. 
T Consensus       221 -~~i~~~~~~~~~~---~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~~---~~--~~~~~~~~~~~-  288 (337)
T PRK03967        221 -EIIDALYRIKPPF---SLNILTMKIVRLALDH--YDLIEERIDYIIKERERVRRELGEYA---YP--SDANFLLLKLD-  288 (337)
T ss_pred             -HHHHHHHhhcCCC---CCCHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHhccCc---CC--CCCcEEEEhHH-
Confidence             6777776654332   2233333333334432  12345556667777778888886532   22  23455676542 


Q ss_pred             CCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          332 MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       332 ~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                             +.+.|.++||.++..  ++    ...+++|+++.   +    .++.+++.++|.++...
T Consensus       289 -------~~~~l~~~gi~v~~~--~~----~~~~~~Ri~~~---~----~~~~~~l~~~l~~~~~~  334 (337)
T PRK03967        289 -------AYDYLLENGIVVRKL--SG----RLEGHIRVTVG---K----REENDEFIKALKEIKEG  334 (337)
T ss_pred             -------HHHHHHHCCEEEEeC--CC----CCCCeEEEecC---C----HHHHHHHHHHHHHHHHh
Confidence                   567777889999642  11    12458999865   2    77889999999876653

>PRK08114 cystathionine beta-lyase; Provisional

Probab=99.84  E-value=6.7e-19  Score=171.71  Aligned_cols=214  Identities=13%  Similarity=0.069  Sum_probs=151.5

Q ss_pred             CchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccc
Q 013217           59 GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGT  138 (447)
Q Consensus        59 ~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~  138 (447)
                      .|++..+.+|    ++++++-|.+.     .+.+.||+.|+.+++.+++++||+|++.+..|++......    ..+...
T Consensus        59 ~~nPt~~~le----~~la~LEg~~~-----a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~----~~l~~~  125 (395)
T PRK08114         59 RGTLTHFSLQ----EAMCELEGGAG-----CALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCS----KILSKL  125 (395)
T ss_pred             CCChhHHHHH----HHHHHHhCCCe-----EEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHH----HHHHhc
Confidence            4778888998    57888888765     2445889999999999999999999998877766532110    011122


Q ss_pred             cceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhC--CEEEEehhhhccccccc
Q 013217          139 SIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVG--ALLMMDMAHISGLVAAS  214 (447)
Q Consensus       139 g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g--~~livD~a~~~g~~~~~  214 (447)
                      |.  ++..++      ..|++++++++++ +||+|++.++.||.  ..|+++|+++|+++|  +++++|.+++.+..   
T Consensus       126 Gi--~v~~vd------~~d~~~l~~~l~~-~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~---  193 (395)
T PRK08114        126 GV--TTTWFD------PLIGADIAKLIQP-NTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVL---  193 (395)
T ss_pred             Cc--EEEEEC------CCCHHHHHHhcCC-CceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccc---
Confidence            33  444432      2478999999987 89999999887776  789999999999985  99999999977754   


Q ss_pred             cCCCCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhH
Q 013217          215 VVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF  290 (447)
Q Consensus       215 ~~~~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~  290 (447)
                        ..|++ ++|++++|+|||++|+.   +|+++.++      ++.+.+.....  ..|....+.-  .+..++.+.+  +
T Consensus       194 --~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~------~~~~~l~~~~~--~~G~~~~p~~--a~l~~rgl~T--L  259 (395)
T PRK08114        194 --FKALDFGIDISIQAGTKYLVGHSDAMIGTAVANA------RCWEQLRENSY--LMGQMVDADT--AYMTSRGLRT--L  259 (395)
T ss_pred             --cCHHHcCCcEEEEcCcccccCCCcceeEEEEcCH------HHHHHHHHHHH--hccCCCCHHH--HHHHHcCCCc--H
Confidence              23444 69999999999999985   37776665      55554443211  1122111111  1223444433  5


Q ss_pred             HHHHHHHHHHHHHHHHHHHHC
Q 013217          291 KVYQNKVVSNCRALASRLVEL  311 (447)
Q Consensus       291 ~~~~~~~~~~~~~l~~~L~~~  311 (447)
                      .-++++..+|+..+++.|++.
T Consensus       260 ~lR~~~~~~na~~va~~L~~h  280 (395)
T PRK08114        260 GVRLRQHEESSLKVAEWLAEH  280 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHcC
Confidence            667999999999999999984

>PLN02590 probable tyrosine decarboxylase

Probab=99.84  E-value=2.7e-18  Score=173.10  Aligned_cols=313  Identities=16%  Similarity=0.114  Sum_probs=195.3

Q ss_pred             hhHHHHHHHHHHHHHHHHcCCCCCcc----ceeeecCCcHHHHHHHHHHhcC-----------CCCEEEEecCCCCcccC
Q 013217           61 NEYIDELETLCQKRALAAFNLDENKW----GVNVQPLSGSPANFEVYTAILK-----------PHDRIMGLDLPHGGHLS  125 (447)
Q Consensus        61 ~~~~~~le~~~~~~~~~~~g~~~~~~----~~~v~~~sGs~a~~~~~~al~~-----------pgd~Vl~~~~~~~~~~~  125 (447)
                      .+...++|+.+.+|+++++|.+...+    ..-+.+++||+||+.++.+...           |.-.|.+.+..|.+.  
T Consensus       165 sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv--  242 (539)
T PLN02590        165 SPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSF--  242 (539)
T ss_pred             CchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHH--
Confidence            34567899999999999999986411    1123346677898877665321           111233333333221  


Q ss_pred             CCcccccccccccccee-EEEecccCC-CCCCCCHHHHHHHhhhh-----CCcEEEEc-CC-CCCCCCChHHHHHHHHHh
Q 013217          126 HGFMTPKRRVSGTSIYF-ESMPYRLDE-STGLVDYDMLEKTAILF-----RPKLIIAG-AS-AYPRDFDYPRMRQIADAV  196 (447)
Q Consensus       126 ~~~~~~~~~~~~~g~~~-~~~~~~~~~-~~~~id~~~l~~~~~~~-----~~klii~~-~~-~~~~~~~~~~i~~ia~~~  196 (447)
                            .+.+.+.|.+- .++.+++|. +++.+|+++|++++.+.     .|-+|+.+ .+ +.+...|+++|+++|++|
T Consensus       243 ------~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~  316 (539)
T PLN02590        243 ------RKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKY  316 (539)
T ss_pred             ------HHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHh
Confidence                  23455666531 234444654 35789999999999653     25566665 23 333378999999999999


Q ss_pred             CCEEEEehhhhccccccccCC---CCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHH-------hhhc----
Q 013217          197 GALLMMDMAHISGLVAASVVA---DPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA-------INNA----  261 (447)
Q Consensus       197 g~~livD~a~~~g~~~~~~~~---~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~-------i~~~----  261 (447)
                      |+|++||+|++........+.   ..++.+|.++.++|||+..|.+ |+++++++.    .+.+.       +...    
T Consensus       317 g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~----~l~~a~~~~~~YL~~~~~~~  392 (539)
T PLN02590        317 GIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRY----SLIDALKTNPEYLEFKVSKK  392 (539)
T ss_pred             CCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCHH----HHHHHhhcCHHHhCCccccc
Confidence            999999999654433322111   2334689999999999999988 999988741    11111       1100    


Q ss_pred             ------cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEeeeCCCCCeeEEecCCCCCC
Q 013217          262 ------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGSDNHLVLVDLRPMGI  334 (447)
Q Consensus       262 ------~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~v~~~~~~~  334 (447)
                            ...+.+.+-. .....++.+++....+++.+++++..+.+++|.+.|++ .+|+++.+.. -.++.+.+.+.+.
T Consensus       393 ~~~~d~~d~~i~lsRr-~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~-l~iVcFr~~~~~~  470 (539)
T PLN02590        393 DTVVNYKDWQISLSRR-FRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRY-FSLVCFRLAPVDG  470 (539)
T ss_pred             ccCCCccccCCCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCc-eEEEEEEecCCCC
Confidence                  0011222222 34566788888888889999999999999999999987 6799887532 2233333333222


Q ss_pred             CH-------HHHHHHHhhcCeE-EccCCCCCCCCCCCCCeEEEecCc-cccCCCCHHHHHHHHHHHHHHHHH
Q 013217          335 DG-------ARVEKILDMASIT-LNKNSVPGDKSALVPGGIRIGSPA-MTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       335 ~~-------~~~~~~L~~~gI~-v~~~~~p~~~~~~~~~~iRig~~~-~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      +.       .++.+.|.+.|.. ++...+.      ....||+++.. .|+    ++|++.+.+.|.+....
T Consensus       471 ~~~~~~~ln~~l~~~l~~~G~~~vs~t~~~------g~~~lR~~i~n~~T~----~~dv~~~~~~i~~~a~~  532 (539)
T PLN02590        471 DEDQCNERNRELLAAVNSTGKIFISHTALS------GKFVLRFAVGAPLTE----EKHVTEAWQIIQKHASK  532 (539)
T ss_pred             CHHHHHHHHHHHHHHHHhCCCEEEEeeEEC------CEEEEEEEecCCCCC----HHHHHHHHHHHHHHHHH
Confidence            21       2455555555543 4322111      12379998643 444    99999999999876543

>PRK07505 hypothetical protein; Provisional

Probab=99.84  E-value=7.7e-18  Score=167.53  Aligned_cols=332  Identities=15%  Similarity=0.125  Sum_probs=192.7

Q ss_pred             cCeeEecCCCCC----CHHHHHHHhhhhhccCC-CCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCc
Q 013217           21 KSLELIASENFT----SRAVMEAVGSCLTNKYS-EGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG   95 (447)
Q Consensus        21 ~~i~l~~~~n~~----~~~v~~a~~~~~~~~~~-~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sG   95 (447)
                      ..|++.. .+++    .|.|.+++...+.. |. .++.+.+.....+...    ..+++++++++.  +    .+..+||
T Consensus        47 ~~ld~~s-~~~lgl~~~p~v~~A~~~~l~~-~g~~~~~~~~~~~~~~~~~----~l~~~la~~~~~--~----~~~~~sG  114 (402)
T PRK07505         47 TFVNFVS-CSYLGLDTHPAIIEGAVDALKR-TGSLHLSSSRTRVRSQILK----DLEEALSELFGA--S----VLTFTSC  114 (402)
T ss_pred             eEEEeec-CCccCCCCCHHHHHHHHHHHHH-hCCCCCCccchhhhhHHHH----HHHHHHHHHhCC--C----EEEECCh
Confidence            3466654 4454    79999999888753 32 1111121111222223    344688899987  2    2334799


Q ss_pred             HHHHHHHHHHhc----CCCC-EEEEec-CCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhC
Q 013217           96 SPANFEVYTAIL----KPHD-RIMGLD-LPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR  169 (447)
Q Consensus        96 s~a~~~~~~al~----~pgd-~Vl~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~  169 (447)
                      +.|+..++..+.    .+|+ .|++.+ ..|++...  +    ......+.  .++.++.      .|++++++++++ +
T Consensus       115 ~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~--~----~~~~~~~~--~v~~~~~------~d~~~l~~~~~~-~  179 (402)
T PRK07505        115 SAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNI--L----KGICADET--EVETIDH------NDLDALEDICKT-N  179 (402)
T ss_pred             HHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHh--h----hhhhhcCC--eEEEeCC------CCHHHHHHHHhc-C
Confidence            989887775432    2233 244444 33443210  0    01111121  3334332      489999998876 6


Q ss_pred             CcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhcccc-cccc-C---CCC--CCcccEEEeCCCcccCCCCCc
Q 013217          170 PKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLV-AASV-V---ADP--FKYCDVVTTTTHKSLRGPRGG  240 (447)
Q Consensus       170 ~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~-~~~~-~---~~~--~~~~Di~~~s~~K~l~Gp~gG  240 (447)
                      +++++++.+++|+  ..++++|.++|+++|+++|+|++|+.+.. ..+. .   ...  .+...+++.|++|.++++ ||
T Consensus       180 ~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~-Gg  258 (402)
T PRK07505        180 KTVAYVADGVYSMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGAS-GG  258 (402)
T ss_pred             CCEEEEEecccccCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhcc-Ce
Confidence            7888777666664  78899999999999999999999864322 1111 0   011  122357788999998654 78


Q ss_pred             eEEeecCCcchhhHHHHhhhccCCCC-CCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCC
Q 013217          241 MIFFKKDPVLGVELESAINNAVFPGL-QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGG  319 (447)
Q Consensus       241 ~i~~~~~~~~~~~~~~~i~~~~~~~~-~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~  319 (447)
                      ++++.++     ++.+.+.....+.+ .++++...+++...+++....+.+.+..+++.++.+.+.+.+...     ..+
T Consensus       259 ~~~~~~~-----~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~g  328 (402)
T PRK07505        259 VIMLGDA-----EQIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIALFDSLIPTE-----QSG  328 (402)
T ss_pred             EEEeCCH-----HHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHhc-----CCC
Confidence            8775442     66666665444433 345555666666666665444445555555555554443332211     111


Q ss_pred             CCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          320 SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       320 ~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      ....+.++.+.. .....++.+.|.++||.+.....|..  +.....||++++..++    ++|++++++.|++++..
T Consensus       329 ~~~~i~~~~~~~-~~~~~~~~~~l~~~Gi~v~~~~~p~~--~~~~~~lRi~~~~~~t----~eei~~~~~~l~~~l~~  399 (402)
T PRK07505        329 SFLPIRLIYIGD-EDTAIKAAKQLLDRGFYTSPVFFPVV--AKGRAGLRIMFRASHT----NDEIKRLCSLLKEILDE  399 (402)
T ss_pred             CCCCEEEEEeCC-HHHHHHHHHHHHHCCCeEeeecCCCC--CCCCceEEEecCccCC----HHHHHHHHHHHHHHHHh
Confidence            112222222221 11346788888899999975432221  1123589999988777    99999999999988764

>PRK13578 ornithine decarboxylase; Provisional

Probab=99.84  E-value=3.3e-19  Score=182.76  Aligned_cols=299  Identities=17%  Similarity=0.132  Sum_probs=198.8

Q ss_pred             HHHHHHHHHcCCCCCccceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecc
Q 013217           70 LCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR  148 (447)
Q Consensus        70 ~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  148 (447)
                      .+++.++++||++...+     .++|| .+|.++++++++|||+||+....|-+.+ |+      .+.++|.....+.-.
T Consensus       178 eAq~~AA~~fgAd~tyF-----lvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~-hg------aLiLsGa~PVYl~P~  245 (720)
T PRK13578        178 DAQKHAAKVFNADKTYF-----VLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNH-HG------ALIQAGATPVYLETA  245 (720)
T ss_pred             HHHHHHHHHhCCCceEE-----EeCChhHHHHHHHHHhcCCCCEEEeecccHHHHH-HH------HHHHcCCeEEEeecc
Confidence            56789999999998643     26776 8999999999999999999876665543 11      134556532222211


Q ss_pred             cCCC--CCCCCHHH-----HHHHhhhh--------C-CcEEEEcCCCCCC-CCChHHHHHH-HHHhCCEEEEehhhhccc
Q 013217          149 LDES--TGLVDYDM-----LEKTAILF--------R-PKLIIAGASAYPR-DFDYPRMRQI-ADAVGALLMMDMAHISGL  210 (447)
Q Consensus       149 ~~~~--~~~id~~~-----l~~~~~~~--------~-~klii~~~~~~~~-~~~~~~i~~i-a~~~g~~livD~a~~~g~  210 (447)
                      .++-  -+.|+++.     |++++.++        + .++++++.|+|-+ +.|++.|.++ |+.++ ++++|+||++.+
T Consensus       246 ~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTYdG~~ydi~~I~~~~~h~~~-~llvDEAhgah~  324 (720)
T PRK13578        246 RNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCD-YILFDSAWVGYE  324 (720)
T ss_pred             ccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCCcceeecHHHHHHHhhccCC-cEEEeCcchhhh
Confidence            2211  12456544     88888764        2 3788888888877 7899999998 78888 999999998766


Q ss_pred             ccccc----CCCCCC-ccc----EEEeCCCcccCCCCC-ceEEeecCCcc---hhhHHHHhhhccCCCCCCCCcHHHHHH
Q 013217          211 VAASV----VADPFK-YCD----VVTTTTHKSLRGPRG-GMIFFKKDPVL---GVELESAINNAVFPGLQGGPHNHTIGG  277 (447)
Q Consensus       211 ~~~~~----~~~~~~-~~D----i~~~s~~K~l~Gp~g-G~i~~~~~~~~---~~~~~~~i~~~~~~~~~g~p~~~~~aa  277 (447)
                      .+.+.    .++.+. ++|    +++-|+||+|++... ++|.++++...   .+--.++++.+..-..+++|++..+|+
T Consensus       325 ~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~~i~g~~~~v~~~r~~~al~m~qSTSPsY~LmAS  404 (720)
T PRK13578        325 QFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIKGQARYCPHKRLNNAFMLHASTSPFYPLFAA  404 (720)
T ss_pred             ccCcccccCChhhhhcCCCCCCeEEEEChhhcchhhhhHhhhhcCCcccccccccCCHHHHHHHHHHHcCCChHHHHHHH
Confidence            54432    112222 688    999999999998766 88888663100   000024566554444567899999999


Q ss_pred             HHHHHHHhcChhHHHHHHHHHHHHHHHHHHH-HH-CCcEeeeC---------------------------CC--------
Q 013217          278 LAVCLKHAQSPEFKVYQNKVVSNCRALASRL-VE-LGYKLVSG---------------------------GS--------  320 (447)
Q Consensus       278 l~~al~~~~~~~~~~~~~~~~~~~~~l~~~L-~~-~g~~~~~~---------------------------~~--------  320 (447)
                      +.+|.+++.....++.+++..+.+..+++.| +. .+++++.+                           +.        
T Consensus       405 LDva~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~w~~~p~~~whgf~~~  484 (720)
T PRK13578        405 LDVNAKMHEGESGRRLWMECVKLGIEARKLILARCKLIRPFIPPVVDGKPWQDYPTEQIASDLRFFSFEPGEKWHGFEGY  484 (720)
T ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccccccccCchhhhcccccccccccCccccccccc
Confidence            9998887765445777888889999999988 33 46665521                           00        


Q ss_pred             -------CCeeEEecCCCCCCC------------HHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCH
Q 013217          321 -------DNHLVLVDLRPMGID------------GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSE  381 (447)
Q Consensus       321 -------~~~~~~v~~~~~~~~------------~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~  381 (447)
                             |.--+++..  .|++            +..+.+.|+++||.+....         ...+=+    +.+.|.++
T Consensus       485 ~~~~~~lDP~KltI~t--~G~~~~~G~~~~~Gipg~~l~~~L~e~gI~~E~~d---------~~~vL~----l~s~g~t~  549 (720)
T PRK13578        485 AEDQYFVDPCKLLLTT--PGIDAETGEYEDFGIPATILANYLRENGIVPEKCD---------LNSILF----LLTPAEDM  549 (720)
T ss_pred             cccccccCCceEEEEc--CCcCcccccccccCccHHHHHHHHHHcCCEEEecC---------CCeEEE----EeCCCCCH
Confidence                   111112222  2333            7889999988899986531         112322    23345558


Q ss_pred             HHHHHHHHHHHHHHH
Q 013217          382 KEFVAIADFIHEGVE  396 (447)
Q Consensus       382 ~di~~l~~~i~~~l~  396 (447)
                      ++++++.++|.+.-+
T Consensus       550 ~~~~~Lv~aL~~f~~  564 (720)
T PRK13578        550 AKLQQLVAMLARFEK  564 (720)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999998887643

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.84  E-value=1.6e-18  Score=167.77  Aligned_cols=301  Identities=19%  Similarity=0.211  Sum_probs=186.8

Q ss_pred             hcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-HH
Q 013217           20 FKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PA   98 (447)
Q Consensus        20 ~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a   98 (447)
                      ++.+.|..++|..++.+.+.....+ .    .||.      .. ...++    +++++++|.+++    +|..++|+ ++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~-~----~y~~------~~-~~~lr----~~la~~~~~~~~----~i~~t~G~~~~   76 (330)
T TIGR01140        17 EDWLDFSTGINPLGPPVPPIPASAW-A----RYPD------PE-YDELR----AAAAAYYGLPAA----SVLPVNGAQEA   76 (330)
T ss_pred             hheeEccccCCCCCCChhhcchHHH-h----hCCC------cc-HHHHH----HHHHHHhCCChh----hEEECCCHHHH
Confidence            3557888888876644444322221 1    2222      11 13444    678888998765    44458888 56


Q ss_pred             HHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCC
Q 013217           99 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS  178 (447)
Q Consensus        99 ~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~  178 (447)
                      +.++ ..++.+| +|++.+|.|.++..        .+...|  ++++.++        |++++++.++  ++++|+++.+
T Consensus        77 i~~~-~~~l~~g-~vl~~~p~y~~~~~--------~~~~~g--~~~~~~~--------d~~~l~~~~~--~~~~v~i~~p  134 (330)
T TIGR01140        77 IYLL-PRLLAPG-RVLVLAPTYSEYAR--------AWRAAG--HEVVELP--------DLDRLPAALE--ELDVLVLCNP  134 (330)
T ss_pred             HHHH-HHHhCCC-eEEEeCCCcHHHHH--------HHHHcC--CEEEEeC--------CHHHHHhhcc--cCCEEEEeCC
Confidence            6654 4446788 68888887766532        222334  3555532        8899998883  6788888877


Q ss_pred             CCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccc-cCCC-CCCcccEEEeCCCcccC--CCCCceEEeecCCc
Q 013217          179 AYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAAS-VVAD-PFKYCDVVTTTTHKSLR--GPRGGMIFFKKDPV  249 (447)
Q Consensus       179 ~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~-~~~~-~~~~~Di~~~s~~K~l~--Gp~gG~i~~~~~~~  249 (447)
                      +||+  ..+   +++|.++|+++|+++++|+++. ++.... .... .....++++.|++|+++  |.|.|++++++   
T Consensus       135 ~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~---  210 (330)
T TIGR01140       135 NNPTGRLIPPETLLALAARLRARGGWLVVDEAFI-DFTPDASLAPQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHP---  210 (330)
T ss_pred             CCCCCCCCCHHHHHHHHHHhHhcCCEEEEECccc-ccCCccchhhHhccCCCEEEEEecchhhcCchhhhhheeCCH---
Confidence            8776  666   5677788899999999999974 333221 1000 00124689999999974  55669999987   


Q ss_pred             chhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhH-HHHHHHHHHHHHHHHHHHHHCC-cEeeeCCCCCeeEEe
Q 013217          250 LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF-KVYQNKVVSNCRALASRLVELG-YKLVSGGSDNHLVLV  327 (447)
Q Consensus       250 ~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~v  327 (447)
                         ++.+.+.......   +.+....+++...+   ...++ +...+++.++.+.+.+.|++.+ +++..  ....+.|+
T Consensus       211 ---~~~~~l~~~~~~~---~~s~~~q~~~~~~l---~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~--~~~~f~~~  279 (330)
T TIGR01140       211 ---ALLARLREALGPW---TVNGPARAAGRAAL---ADTAWQAATRARLAAERARLAALLARLGGLEVVG--GTALFLLV  279 (330)
T ss_pred             ---HHHHHHHhcCCCC---CchHHHHHHHHHHH---hchHHHHHHHHHHHHHHHHHHHHHHhCCCceECC--CCCeEEEE
Confidence               6777776643221   22333333322233   33344 5667888888999999998876 55433  23566788


Q ss_pred             cCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217          328 DLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  391 (447)
Q Consensus       328 ~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i  391 (447)
                      ++.    +..++.+.|.++||.+..+..++   ...+++||+++..  .    .++ +++..++
T Consensus       280 ~~~----~~~~l~~~l~~~gi~v~pg~~f~---~~~~~~iRi~~~~--~----~~~-~~~~~~l  329 (330)
T TIGR01140       280 RTP----DAAALHEALARRGILIRDFDNFP---GLDPRYLRFALPT--D----EEN-DRLEEAL  329 (330)
T ss_pred             EcC----CHHHHHHHHHHCCEEEEECCCCC---CCCCCEEEEEecC--H----HHH-HHHHHhh
Confidence            764    35678888888999996543221   1224589998642  1    233 6666554

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=99.84  E-value=5.6e-19  Score=173.35  Aligned_cols=212  Identities=22%  Similarity=0.243  Sum_probs=147.2

Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217           60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  139 (447)
Q Consensus        60 g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g  139 (447)
                      +++..+.+|    +.++++.|.+.     .+...+|++|+.+++.++++|||+|++.++.|++.+....       .+.+
T Consensus        49 ~~p~~~~le----~~lA~l~g~~~-----v~~~~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~-------~~~~  112 (382)
T TIGR02080        49 GNPTRDLLQ----QALAELEGGAG-----AVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLN-------ALAK  112 (382)
T ss_pred             CCchHHHHH----HHHHHHhCCCc-----EEEEcCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHH-------HHHh
Confidence            455567777    57888888542     2334566699999999999999999999998876542110       0111


Q ss_pred             c-eeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccC
Q 013217          140 I-YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV  216 (447)
Q Consensus       140 ~-~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~  216 (447)
                      . .+++...  +    ..|++++++++++ +||+|+++.++||+  ..|+++|.++|+++|+++++|+++..+...    
T Consensus       113 ~~~~~v~~~--d----~~d~~~l~~ai~~-~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~----  181 (382)
T TIGR02080       113 KGCFRVLFV--D----QGDEQALRAALAQ-KPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQ----  181 (382)
T ss_pred             hcCeEEEEE--C----CCCHHHHHHhcCc-CceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccccC----
Confidence            1 1233221  2    2489999999987 89999999888886  789999999999999999999998665432    


Q ss_pred             CCCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccCC-CCCCCCcHHHHHHHHHHHHHhcChhHH
Q 013217          217 ADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFP-GLQGGPHNHTIGGLAVCLKHAQSPEFK  291 (447)
Q Consensus       217 ~~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~~-~~~g~p~~~~~aal~~al~~~~~~~~~  291 (447)
                       .|+. ++|++++|++|++.|+.   +|+++++++     ++.+++...... +...+|  . -+  +.+++.+.  .+.
T Consensus       182 -~pl~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~-----~~~~~l~~~~~~~g~~~sp--~-~a--~l~lr~l~--tl~  248 (382)
T TIGR02080       182 -NPLALGADLVLHSCTKYLNGHSDVIAGAVIAKDP-----QVAEELAWWANNLGVTGGA--F-DS--YLTLRGLR--TLV  248 (382)
T ss_pred             -CchhhCCCEEEeecceeccCCCCceeEEEEeCCH-----HHHHHHHHHHHccCCCCCH--H-HH--HHHHcccc--hHH
Confidence             2333 58999999999998764   588877664     666666543221 222222  1 12  22344443  356


Q ss_pred             HHHHHHHHHHHHHHHHHHHC
Q 013217          292 VYQNKVVSNCRALASRLVEL  311 (447)
Q Consensus       292 ~~~~~~~~~~~~l~~~L~~~  311 (447)
                      .+++++.+|+..+++.|++.
T Consensus       249 ~R~~~~~~na~~~a~~L~~~  268 (382)
T TIGR02080       249 ARMRLQQRNAQAIVEYLQTQ  268 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHhC
Confidence            67889999999999999873

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.84  E-value=6.1e-19  Score=172.72  Aligned_cols=224  Identities=18%  Similarity=0.175  Sum_probs=152.4

Q ss_pred             CCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccc
Q 013217           51 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT  130 (447)
Q Consensus        51 g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~  130 (447)
                      ||...||  +++....+|    +.+++++|.+..     +.++||++|+.+++ ++++|||+|++.++.|++.+...   
T Consensus        43 ~~~y~r~--~~pt~~~le----~~la~l~g~~~~-----~~~~sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~---  107 (366)
T PRK08247         43 GFDYSRT--GNPTRGVLE----QAIADLEGGDQG-----FACSSGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLF---  107 (366)
T ss_pred             CccccCC--CCchHHHHH----HHHHHHhCCCcE-----EEEcCHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHH---
Confidence            3444443  456677887    579999999762     44588888888664 68899999999999887643211   


Q ss_pred             cccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhc
Q 013217          131 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHIS  208 (447)
Q Consensus       131 ~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~  208 (447)
                       ...+...|.  +++.++.      .|++++++++++ +|++|+++.|+||.  ..|+++|.++|+++|+++++|+++..
T Consensus       108 -~~~~~~~G~--~v~~vd~------~d~~~l~~~i~~-~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~  177 (366)
T PRK08247        108 -EEHWKKWNV--RFVYVNT------ASLKAIEQAITP-NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYT  177 (366)
T ss_pred             -HHHhhccCc--eEEEECC------CCHHHHHHhccc-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcc
Confidence             011122343  4444322      489999999987 89999998888886  56899999999999999999999754


Q ss_pred             cccccccCCCCCC-cccEEEeCCCcccCCC---CCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHH
Q 013217          209 GLVAASVVADPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH  284 (447)
Q Consensus       209 g~~~~~~~~~~~~-~~Di~~~s~~K~l~Gp---~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~  284 (447)
                      +..     ..|+. ++|++++|++|+++|+   ++|+++.+++     ++.+++........ ...+... +  +.+++.
T Consensus       178 ~~~-----~~p~~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~-----~l~~~~~~~~~~~g-~~~s~~~-a--~l~~~~  243 (366)
T PRK08247        178 PVL-----QRPLEEGADIVIHSATKYLGGHNDVLAGLVVAKGQ-----ELCERLAYYQNAAG-AVLSPFD-S--WLLIRG  243 (366)
T ss_pred             ccc-----cCchhcCCcEEEeecceeccCCCceeeeEEecChH-----HHHHHHHHHHHhcC-CCCChHH-H--HHHHhc
Confidence            432     22333 5899999999999876   5688888743     56665543221111 1112211 1  122332


Q ss_pred             hcChhHHHHHHHHHHHHHHHHHHHHH-CCcEe
Q 013217          285 AQSPEFKVYQNKVVSNCRALASRLVE-LGYKL  315 (447)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~  315 (447)
                      +.  .+..++++..+|++.+.+.|++ +++..
T Consensus       244 l~--tl~~r~~~~~~~a~~l~~~L~~~p~v~~  273 (366)
T PRK08247        244 MK--TLALRMRQHEENAKAIAAFLNEQPGVTD  273 (366)
T ss_pred             cC--cHHHHHHHHHHHHHHHHHHHHhCCCeeE
Confidence            22  3556778889999999999998 46654

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.83  E-value=7.3e-19  Score=173.36  Aligned_cols=213  Identities=20%  Similarity=0.208  Sum_probs=149.8

Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217           60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  139 (447)
Q Consensus        60 g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g  139 (447)
                      +++..+.+|    +++++++|.+.     .+.++||++|+..++.++++|||+|++..+.|++......    ..+...|
T Consensus        62 ~~p~~~~le----~~lA~l~g~~~-----~i~~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~----~~~~~~G  128 (398)
T PRK08249         62 TNPTVQAFE----EKVRILEGAEA-----ATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFT----EFLPRMG  128 (398)
T ss_pred             CChHHHHHH----HHHHHHhCCCe-----EEEeCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHH----HHHhhCC
Confidence            456667777    58899999865     3556999999999999999999999999998876432110    0112233


Q ss_pred             ceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCC
Q 013217          140 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  217 (447)
Q Consensus       140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~  217 (447)
                        +++..++      ..|++++++++++ +|++|+++.++||+  ..|+++|.++|+++|+++++|++++.+...     
T Consensus       129 --i~v~~vd------~~d~e~l~~~i~~-~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~~~-----  194 (398)
T PRK08249        129 --VDVTLCE------TGDHEQIEAEIAK-GCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPINQ-----  194 (398)
T ss_pred             --eEEEEcC------CCCHHHHHHhcCC-CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCccccC-----
Confidence              3443322      2689999999987 89999998788875  789999999999999999999998654321     


Q ss_pred             CCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHH
Q 013217          218 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY  293 (447)
Q Consensus       218 ~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~  293 (447)
                      .|+. ++|++++|++|+++|+.   ||+++.++      ++.+++......  .|.......+.+  +++.+.  .+..+
T Consensus       195 ~~l~~~~Divv~S~sK~l~g~~~~~gG~vv~~~------~l~~~l~~~~~~--~g~~~s~~~a~l--~l~~l~--tL~~R  262 (398)
T PRK08249        195 NPLALGADLVIHSATKFLSGHADALGGVVCGSK------ELMEQVYHYREI--NGATMDPMSAYL--ILRGMK--TLKLR  262 (398)
T ss_pred             CchhhCCCEEeccCceecCCCCCceEEEEECCH------HHHHHHHHHHHh--cCCCCCHHHHHH--HHhCcc--hHHHH
Confidence            2332 68999999999998754   47777665      666666543221  122222222222  333332  35677


Q ss_pred             HHHHHHHHHHHHHHHHHC
Q 013217          294 QNKVVSNCRALASRLVEL  311 (447)
Q Consensus       294 ~~~~~~~~~~l~~~L~~~  311 (447)
                      +++..+|++.+.+.|++.
T Consensus       263 ~~~~~~na~~la~~L~~~  280 (398)
T PRK08249        263 VRQQQESAMALAKYLQTH  280 (398)
T ss_pred             HHHHHHHHHHHHHHHHcC
Confidence            899999999999999873

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=99.83  E-value=1.5e-18  Score=154.75  Aligned_cols=324  Identities=19%  Similarity=0.210  Sum_probs=209.6

Q ss_pred             CeeEecCCCCC--CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHH
Q 013217           22 SLELIASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN   99 (447)
Q Consensus        22 ~i~l~~~~n~~--~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~   99 (447)
                      ...| -|.+.+  +.+.+++|..        ...|...|+..+....+|    ++.++++|-+..     ..++|||.+|
T Consensus        23 ~vDL-RSDTvT~PTdeMr~am~e--------A~vgDdVyGeD~tt~rLE----~~vA~l~GKEAg-----LFv~SGTmgN   84 (384)
T KOG1368|consen   23 SVDL-RSDTVTVPTDEMRRAMAE--------ASVGDDVYGEDPTTNRLE----QRVAELFGKEAG-----LFVPSGTMGN   84 (384)
T ss_pred             cccc-ccccccCChHHHHHHHhh--------cccCcccccCCccHHHHH----HHHHHHhCccce-----eeeccccccc
Confidence            3444 355543  3456666653        234445677777788888    588999998864     3349999999


Q ss_pred             HHHHHHhc-CCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhC-------Cc
Q 013217          100 FEVYTAIL-KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR-------PK  171 (447)
Q Consensus       100 ~~~~~al~-~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~-------~k  171 (447)
                      ..+++.-+ +||.+|++-+..|--.+..+     ....+.|.  .+.++.. ++++.+|++++++++...+       |+
T Consensus        85 llaIm~Hc~~rg~eii~gd~~HI~~~E~g-----g~s~l~gv--~~~tv~~-e~dgtm~ledIe~~ir~~~GD~H~p~T~  156 (384)
T KOG1368|consen   85 LLAIMVHCHQRGSEIIVGDRAHIHRYEQG-----GISQLAGV--HVRTVKN-ENDGTMDLEDIEAAIRVPKGDCHMPPTK  156 (384)
T ss_pred             HHHHHHHhcCCCceEEeccchheeehhcc-----Chhhhccc--eeEeeee-CCCCeeeHHHHHHhhcCCCCCccCCCce
Confidence            88887764 69999998776542221111     01123343  3444333 3578999999999997432       68


Q ss_pred             EEEEcCC-CC-CC-CCCh---HHHHHHHHHhCCEEEEehhhhccc-cccccCCCC-CCcccEEEeCCCcccCCCCCceEE
Q 013217          172 LIIAGAS-AY-PR-DFDY---PRMRQIADAVGALLMMDMAHISGL-VAASVVADP-FKYCDVVTTTTHKSLRGPRGGMIF  243 (447)
Q Consensus       172 lii~~~~-~~-~~-~~~~---~~i~~ia~~~g~~livD~a~~~g~-~~~~~~~~~-~~~~Di~~~s~~K~l~Gp~gG~i~  243 (447)
                      +|++..+ +| ++ ..|+   +++.++|+++|+.+++|+|..... ++.++.-.. ...+|.+.-.++|.|++|-|++|+
T Consensus       157 LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgAPVGSViV  236 (384)
T KOG1368|consen  157 LICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGAPVGSVIV  236 (384)
T ss_pred             EEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCCcccEEE
Confidence            9988743 43 33 6666   477788999999999999864322 122211000 014788999999999999999999


Q ss_pred             eecCCcchhhHHHHhhhccCCCCCCCCcHH-HHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCC-cEeeeCCCC
Q 013217          244 FKKDPVLGVELESAINNAVFPGLQGGPHNH-TIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG-YKLVSGGSD  321 (447)
Q Consensus       244 ~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~-~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~  321 (447)
                      +++      +++++........ .|+.... .+|+.  |+- ...+.+. ..++-.+.++.|++.+...+ +++-.+..+
T Consensus       237 G~k------~FI~kA~~~RKal-GGGmRQsGvLaaa--aLv-al~~~~~-~L~~dHk~A~~lAe~~~~~~~i~v~v~a~e  305 (384)
T KOG1368|consen  237 GSK------DFIDKARHFRKAL-GGGMRQSGVLAAA--ALV-ALDENVP-LLRADHKRAKELAEYINTPEEIRVEVPAVE  305 (384)
T ss_pred             ccH------HHHHHHHHHHHHh-cCchhHHHHHHHH--HHH-HhhcchH-HHHHHHHHHHHHHHHhccccceeeecchhh
Confidence            998      6766543221111 1222222 22222  221 2223344 45667788899999998865 776655455


Q ss_pred             CeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          322 NHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       322 ~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      +.++.+.+...+++.+++.+.++++||.+    ++++     ..++|+.++.--+    .++++.+...+.+.+
T Consensus       306 tNiv~~~l~q~~~~~~~l~~~~~k~gi~l----m~~~-----s~r~Rivlh~Qvt----~~~ve~~~~~~~k~~  366 (384)
T KOG1368|consen  306 TNIVNMVLCQARLTAEELCKFLEKNGILL----MGGA-----SRRIRIVLHHQVT----DEDVEYVKSVLSKKF  366 (384)
T ss_pred             cceeeeecccccCCHHHHHHHHHHCCeEE----eecc-----ccceEEEEEEecC----HHHHHHHHHHHHHHH
Confidence            66666656556789999999999999998    3332     3479998876555    899999988885433

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=99.83  E-value=5.6e-19  Score=180.92  Aligned_cols=292  Identities=15%  Similarity=0.118  Sum_probs=201.2

Q ss_pred             HHHHHHHHHcCCCCCccceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecc
Q 013217           70 LCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR  148 (447)
Q Consensus        70 ~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  148 (447)
                      .+++.++++||++...+     +++|| .+|.++++++++|||+||+....|-+.+.        .+.++|.  +++.+.
T Consensus       199 eAe~~AA~~fgAd~tyf-----vvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~h--------aLilsga--~PVYl~  263 (714)
T PRK15400        199 EAEEYIARVFNADRSYM-----VTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLTH--------LMMMSDV--TPIYFR  263 (714)
T ss_pred             HHHHHHHHHhCCCcEEE-----EeCchHHHHHHHHHHhcCCCCEEEeecccHHHHHH--------HHHHcCC--eEEEec
Confidence            56788999999998633     26776 89999999999999999998776655431        3445665  333322


Q ss_pred             cC-CCC---CCCC-----HHHHHHHhhhh----CCcEEEEcCCCCCC-CCChHHHHHHHHHhCCEEEEehhhhccccccc
Q 013217          149 LD-EST---GLVD-----YDMLEKTAILF----RPKLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAAS  214 (447)
Q Consensus       149 ~~-~~~---~~id-----~~~l~~~~~~~----~~klii~~~~~~~~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~  214 (447)
                      .. +..   +.++     .+.+++.+.++    +|+.++++.|+|-+ +.|++.|.++|+.++  +++|+||++.+.+.+
T Consensus       264 P~rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pTYdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p  341 (714)
T PRK15400        264 PTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSP  341 (714)
T ss_pred             ccccccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECCCCccEecCHHHHHHHhCCCC--EEEEccchhhhccCc
Confidence            11 111   2345     89999998763    23367777778776 889999999999887  789999987654444


Q ss_pred             cCC--CCCC-cc---c--EEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHh
Q 013217          215 VVA--DPFK-YC---D--VVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHA  285 (447)
Q Consensus       215 ~~~--~~~~-~~---D--i~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~  285 (447)
                      ..+  +++. ++   |  +++-|+||+|+|... ++|.++..     --.++++.+.....+++|++..+|++.+|.+++
T Consensus       342 ~~~~~sam~~ga~~~~~i~vtQStHKtL~alTQaS~LHvkg~-----vd~~~~n~a~~m~~STSPsY~l~ASLD~a~~~m  416 (714)
T PRK15400        342 IYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD-----VNEETFNEAYMMHTTTSPHYGIVASTETAAAMM  416 (714)
T ss_pred             ccCCcChhhcCCCCCCceEEEEchhhcccchhHHhHHHHcCC-----CCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            332  3332 45   5  999999999999766 78777552     112455555444456789999999999999888


Q ss_pred             cChhHHHHHHHHHHHHHHHHHHHHH-CC------cEeeeCC----------------------------CCCeeEEecCC
Q 013217          286 QSPEFKVYQNKVVSNCRALASRLVE-LG------YKLVSGG----------------------------SDNHLVLVDLR  330 (447)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~l~~~L~~-~g------~~~~~~~----------------------------~~~~~~~v~~~  330 (447)
                      .....++.+++..+.+..+++.|.+ .+      |.++.+.                            -|.--+++..+
T Consensus       417 ~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lDP~Klti~tp  496 (714)
T PRK15400        417 KGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTP  496 (714)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHhCCCcccCceEEecChhhcccchhcccCccccccCcccccccccccCCceEEEEeC
Confidence            7544577888899999999999877 34      4444210                            01111233332


Q ss_pred             C---------CCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          331 P---------MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       331 ~---------~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      .         .|+++..+.++|+++||.+....         ...+=+    +.+.|.++++++++.++|.+.-+
T Consensus       497 gi~~~g~~~~~Gipg~~v~~~L~e~gI~~E~~d---------~~~iLf----l~s~g~t~~~~~~L~~aL~~f~~  558 (714)
T PRK15400        497 GMKKDGTMSDFGIPASIVAKYLDEHGIVVEKTG---------PYNLLF----LFSIGIDKTKALSLLRALTDFKR  558 (714)
T ss_pred             CCCCCccccccCCCHHHHHHHHHHcCCEEEecC---------CCeEEE----EeCCCCCHHHHHHHHHHHHHHHH
Confidence            2         46778899999999999997531         123333    23345559999999998877533

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.83  E-value=1.7e-18  Score=152.32  Aligned_cols=324  Identities=17%  Similarity=0.202  Sum_probs=208.0

Q ss_pred             cCeeEecCC--CCCCHHHHHHHhhhhhccCCCCCCCCcccC-c------hhHHHHHHHHHHHHHHHHcCCCCCccceeee
Q 013217           21 KSLELIASE--NFTSRAVMEAVGSCLTNKYSEGLPGKRYYG-G------NEYIDELETLCQKRALAAFNLDENKWGVNVQ   91 (447)
Q Consensus        21 ~~i~l~~~~--n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~-g------~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~   91 (447)
                      ..||+.|-.  ..++++.++|+..     |.+||.-..|-. |      .+-+..+-    +.+++++|++.      +.
T Consensus        16 ~~iNv~PiQrGGiLt~eArkal~E-----~gDGYSvCD~C~~Grldei~kPpI~~F~----~dlaeFlg~D~------~R   80 (382)
T COG1103          16 GFINVNPIQRGGILTEEARKALLE-----WGDGYSVCDFCLEGRLDEITKPPIKDFL----EDLAEFLGMDE------VR   80 (382)
T ss_pred             CccccChhhccCcCCHHHHHHHHH-----hcCCcchhhhhccCccccccCCcHHHHH----HHHHHHhCCce------ee
Confidence            456665443  4679999999864     456665544331 1      11122221    35889999984      45


Q ss_pred             cCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC-CCCCCCCHHHHHHHhhh--
Q 013217           92 PLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-ESTGLVDYDMLEKTAIL--  167 (447)
Q Consensus        92 ~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~id~~~l~~~~~~--  167 (447)
                      +|.|+ ++-++++.++.++||.|++....|-..    |.    .....|.  ++..++.. -..+.++++...+.+++  
T Consensus        81 ~t~GARe~KfavMhal~~~gd~vV~D~~aHYtt----yv----AAEragl--~v~eVp~tg~Pey~i~~e~y~~viee~~  150 (382)
T COG1103          81 VTAGAREAKFAVMHALCKEGDWVVVDSLAHYTT----YV----AAERAGL--NVAEVPNTGYPEYKITPEGYAEVIEEVK  150 (382)
T ss_pred             ecccchhhHHHHHHHhccCCCEEEEcCcchHHH----HH----HHHhcCC--eEEecCCCCCCceEecHHHHHHHHHHHH
Confidence            69998 999999999999999999988765332    11    2234454  33333321 12457888877766643  


Q ss_pred             ----hCCcEEEEcC--CCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCC-CCCc
Q 013217          168 ----FRPKLIIAGA--SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRG-PRGG  240 (447)
Q Consensus       168 ----~~~klii~~~--~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~G-p~gG  240 (447)
                          ..|.+.+++.  .+|+...|.+.++++|+++|++++...|+..|-++......   ++||+++|+||++++ .+.|
T Consensus       151 ~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~ke~---g~DFiVgSGHKsmAAs~PiG  227 (382)
T COG1103         151 DEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGKEI---GADFIVGSGHKSMAASAPIG  227 (382)
T ss_pred             hccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeecccccccccc---CCCEEEecCccchhccCCee
Confidence                1366777763  45666889999999999999999999999888775543332   599999999999853 3458


Q ss_pred             eEEeecCCcchhhHHHHhhhcc---CC-------C--CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHH
Q 013217          241 MIFFKKDPVLGVELESAINNAV---FP-------G--LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRL  308 (447)
Q Consensus       241 ~i~~~~~~~~~~~~~~~i~~~~---~~-------~--~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L  308 (447)
                      ++..+.      ++.+.+-+..   ++       |  ..|.|.+..||++-...+.      -.+++.-.++++++.+.|
T Consensus       228 vl~~~e------E~ae~V~r~Sg~~~~~KEvellGCT~rGapivTlmASfP~V~eR------VkrWdeEv~kaR~fv~el  295 (382)
T COG1103         228 VLAMSE------EWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTLMASFPHVVER------VKRWDEEVEKARWFVAEL  295 (382)
T ss_pred             EEeehh------HHHHHHHhhcccccccceeeeecccccCchHHHHHhcCHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence            888887      6766553321   21       1  1344544444443322211      234566678899999999


Q ss_pred             HHCC-cEeeeCCCCCeeEEecCCCCCC---------CHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCC
Q 013217          309 VELG-YKLVSGGSDNHLVLVDLRPMGI---------DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRG  378 (447)
Q Consensus       309 ~~~g-~~~~~~~~~~~~~~v~~~~~~~---------~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g  378 (447)
                      ++.| +..++..+.+|-+ +.+..+..         .+..+.+-|.++||.--   .||.     +..+.+|+     .|
T Consensus       296 Ekigg~~qlG~rPk~HdL-m~Fetp~f~eIakk~~r~gyFlY~ELK~RgI~GI---~~G~-----Tk~~K~sv-----yG  361 (382)
T COG1103         296 EKIGGVKQLGERPKNHDL-MKFETPVFHEIAKKHKRKGYFLYEELKKRGIHGI---QPGQ-----TKYFKLSV-----YG  361 (382)
T ss_pred             HHhhhHHHhCCCCcccce-eeecCchHHHHHHhCcCCceeeHHHHHhcCcccc---ccCc-----eeEEEEEe-----ec
Confidence            9965 7766644445533 22222111         23346677888887531   1221     33566654     67


Q ss_pred             CCHHHHHHHHHHHHHHHHHH
Q 013217          379 FSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       379 ~~~~di~~l~~~i~~~l~~~  398 (447)
                      ++.|++++++++++++++.+
T Consensus       362 l~~Eqve~V~~afkeI~eky  381 (382)
T COG1103         362 LSWEQVEYVVDAFKEIAEKY  381 (382)
T ss_pred             CCHHHHHHHHHHHHHHHHhc
Confidence            88999999999999988753

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.83  E-value=2e-18  Score=167.37  Aligned_cols=297  Identities=13%  Similarity=0.129  Sum_probs=195.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc-CCCCEEEEecCCCCcccCCCcccccccccc
Q 013217           59 GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL-KPHDRIMGLDLPHGGHLSHGFMTPKRRVSG  137 (447)
Q Consensus        59 ~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~-~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~  137 (447)
                      .+.++.+.+. .+.+.++++|+.+.+.. +.+...|||.++.+++.+++ ++||+|++..     .++..+..  ..++.
T Consensus        33 Rs~~F~~i~~-e~~~~L~~l~~~~~~~~-v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-----~FG~r~~~--eia~~  103 (374)
T TIGR01365        33 RSKLGKEKLA-EAIKKTREMLGVPADYL-IGIVPASDTGAVEMALWSMLGCRGVDVLAWE-----SFGKGWVT--DVTKQ  103 (374)
T ss_pred             CCHHHHHHHH-HHHHHHHHHhCCCCCcE-EEEECCchHHHHHHHHHHcCCCCCCeEEEEC-----HHHHHHHH--HHHHh
Confidence            3445555444 66789999999854332 45667899999999999998 5899999753     22222210  12233


Q ss_pred             ccce-eEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcC--CCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccc
Q 013217          138 TSIY-FESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA--SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAAS  214 (447)
Q Consensus       138 ~g~~-~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~--~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~  214 (447)
                      .|.. +..+.  .+ .+..+|+++++.     +.. |++++  ++++...|++++...+  +++++++|++.+.|..+. 
T Consensus       104 ~g~~~v~~l~--~~-~g~~~~~~~ve~-----~~~-v~~vhnETSTGv~npv~~i~~~~--~~~lliVDavSs~g~~~l-  171 (374)
T TIGR01365       104 LKLPDVRVLE--AE-YGKLPDLKKVDF-----KND-VVFTWNGTTSGVRVPNGDFIPAD--REGLTICDATSAAFAQDL-  171 (374)
T ss_pred             cCCCCcEEEc--CC-CCCCCCHHHcCC-----CCC-EEEecCCCchheecccccccccc--CCCcEEEEccchhcCCCC-
Confidence            4442 33333  32 456789999872     222 44443  3333367887655322  489999999877775533 


Q ss_pred             cCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhc----------------------cCCCCCCCCc
Q 013217          215 VVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNA----------------------VFPGLQGGPH  271 (447)
Q Consensus       215 ~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~----------------------~~~~~~g~p~  271 (447)
                          .++.+|++++|.+|+|.+|.| |+++++++      ..++....                      ....+..||+
T Consensus       172 ----~~d~iDv~~tgsQK~L~~ppGls~v~vs~~------Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~  241 (374)
T TIGR01365       172 ----DYHKLDVVTFSWQKVLGGEGAHGMLILSPR------AVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPS  241 (374)
T ss_pred             ----ChhHCcEEEEechhccCCCCceEEEEECHH------HHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChH
Confidence                233589999999999999999 89999884      33322210                      0012334666


Q ss_pred             HHHHHHHHHHHHHhcCh-hHHHHHHHHHHHHHHHHHHHHHCC-cEeeeC--CCCCeeE-EecCCCCCC-----C-----H
Q 013217          272 NHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVELG-YKLVSG--GSDNHLV-LVDLRPMGI-----D-----G  336 (447)
Q Consensus       272 ~~~~aal~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~--~~~~~~~-~v~~~~~~~-----~-----~  336 (447)
                      .+.+.++..+++.+.++ |++.+.+++.++++.+++.+++.| +.++..  ...++.+ .+.+...++     +     .
T Consensus       242 v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~  321 (374)
T TIGR01365       242 MLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPAIDALDEDAQADFA  321 (374)
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCCccccccccchhhHHH
Confidence            66676777777776664 799999999999999999999998 666652  1123322 334433333     2     5


Q ss_pred             HHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          337 ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       337 ~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      .++.+.|.++||.+..+.     ....+..+|||+....+    .+|++.+.++|+=+.
T Consensus       322 ~~~~~~l~~~gi~i~~G~-----~~~~~~~fRIg~~G~i~----~~di~~l~~~l~~~~  371 (374)
T TIGR01365       322 KELISTLEKEGVAYDIGS-----YRDAPSGLRIWCGATVE----KSDLECLCPWLDWAF  371 (374)
T ss_pred             HHHHHHHHHCCEEEeccc-----cccCCCceEEecCCcCC----HHHHHHHHHHHHHHH
Confidence            789999999999885431     11234689999887666    999999999987554

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=99.83  E-value=5.4e-18  Score=153.19  Aligned_cols=329  Identities=17%  Similarity=0.172  Sum_probs=220.6

Q ss_pred             CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHH-HHHHHHh--c
Q 013217           31 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN-FEVYTAI--L  107 (447)
Q Consensus        31 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~-~~~~~al--~  107 (447)
                      ..|+.+.....+.....|.++-..+...+...+.+.=+ ..-.+++.+.|+.+.|.+    ++.+++.| +.++.+.  .
T Consensus        42 a~p~~~~a~~~q~a~deW~~~lirsw~~a~~~W~~lp~-~lgdklApLiGA~~~Evv----v~dtts~nl~k~L~aalr~  116 (407)
T COG3844          42 ARPRAVTARLQQVATDEWGEGLIRSWNKAKADWFDLPE-RLGDKLAPLIGARAGEVV----VTDTTSINLFKVLAAALRP  116 (407)
T ss_pred             cCchHHHHHHHHHHHHHHHhhhhhhhcccCCchhhchh-HHHHHhhhhhcCCCCceE----EeCCcchHHHHHHHHHhcc
Confidence            34667777777777777766555544333344444333 445789999999987642    25555554 3344444  4


Q ss_pred             CCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCC
Q 013217          108 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD  185 (447)
Q Consensus       108 ~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~  185 (447)
                      .+|++|+++.-.   .+-..++.....+.+.+..     +++   .+.++++++++++++ ++.+|++++.+|-+  ..|
T Consensus       117 ~~~r~vIv~E~~---~fpTdly~a~g~~~~~~~~-----~~~---~~~~~P~~~~~~~~d-d~AvV~L~~V~y~TGql~d  184 (407)
T COG3844         117 QEGRRVIVSEGD---NFPTDLYIAEGLADLLGIG-----YDL---EGVIAPRALEEAITD-DVAVVLLSHVNYKTGQLLD  184 (407)
T ss_pred             CCCceEEeecCC---CCCcchhhhcchhhhhccc-----ccc---eeeeChHHHHHhhcc-ceEEEEeccccccccceee
Confidence            568999987632   2212222222233333322     112   256788899999987 88889898777654  789


Q ss_pred             hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCC-CCC-ceEEeecCCc--------ch----
Q 013217          186 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRG-PRG-GMIFFKKDPV--------LG----  251 (447)
Q Consensus       186 ~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~G-p~g-G~i~~~~~~~--------~~----  251 (447)
                      +.+|.+++|++|++++-|-+|++|.++.+++..   ++|+.+.++||.|+| |.+ +++++.+...        .|    
T Consensus       185 m~aiT~~AH~~galv~wDLAHsaGavp~~Lh~~---gaDfaigcsyKYLNgGPGapa~l~v~~~h~e~~~~~lsgW~gha  261 (407)
T COG3844         185 MRAITALAHQHGALVGWDLAHSAGAVPVDLHAA---GADFAIGCSYKYLNGGPGAPAGLFVAPRHRERSWPPLSGWWGHA  261 (407)
T ss_pred             HHHHHHHHHhcCceEEeehhcccCCcceeeccc---CCCeeeeeeceeccCCCCCceeEEeccccccccccccccccCCC
Confidence            999999999999999999999999988777665   499999999999965 554 8888877421        00    


Q ss_pred             --hhHHHHhhhc--cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH----CCcEeeeCCC---
Q 013217          252 --VELESAINNA--VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----LGYKLVSGGS---  320 (447)
Q Consensus       252 --~~~~~~i~~~--~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~---  320 (447)
                        ..+.+.....  .....+|++.+..++++..+|+.....+..+.+++-...++++.+-++.    .++++.++-.   
T Consensus       262 ~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~  341 (407)
T COG3844         262 RPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEE  341 (407)
T ss_pred             CcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhh
Confidence              0011000000  0011268888888999998998877667777788888888888876655    3677776421   


Q ss_pred             -CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecC-ccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          321 -DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSP-AMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       321 -~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~-~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                       .+|.   ++...  .+.++.+.|.++||.....         .++.+|+++. .|++    -+|+=..++.|.+++..
T Consensus       342 rGsqv---S~~hp--~~~~V~qaLi~rGVigD~R---------~P~vlRfgftPlY~~----~~DVw~AV~~L~evL~t  402 (407)
T COG3844         342 RGSQV---SLYHP--HGYQVMQALIDRGVIGDFR---------EPDVLRFGFTPLYVS----FVDVWDAVDALEEVLDT  402 (407)
T ss_pred             cccee---eEecC--cHHHHHHHHHHcCcccccc---------CCCeeeecCccceec----hhHHHHHHHHHHHHHHh
Confidence             2342   22222  5789999999999987542         2568999965 4565    78988888888888874

>PLN02509 cystathionine beta-lyase

Probab=99.83  E-value=1.1e-18  Score=173.70  Aligned_cols=215  Identities=21%  Similarity=0.217  Sum_probs=145.9

Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217           60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  139 (447)
Q Consensus        60 g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g  139 (447)
                      |++..+.+|    +++++++|.+.     .+.++||+.|+.+ +..+++|||+|++.++.|+++.....    ..+...|
T Consensus       131 gnpt~~aLE----~~lA~leg~e~-----ai~~~SG~aAi~~-il~ll~~GD~VI~~~~~y~~t~~ll~----~~l~~~G  196 (464)
T PLN02509        131 GNPTRDALE----SLLAKLDKADR-----AFCFTSGMAALSA-VTHLIKNGEEIVAGDDVYGGSDRLLS----QVVPRSG  196 (464)
T ss_pred             CCHHHHHHH----HHHHHHhCCCE-----EEEeCcHHHHHHH-HHHHhCCCCEEEEcCCchhhHHHHHH----HHHHHCC
Confidence            566677777    57888888764     2445888877654 44679999999999988876531100    0112234


Q ss_pred             ceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCC
Q 013217          140 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  217 (447)
Q Consensus       140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~  217 (447)
                      .  +++.++      ..|++++++++.+ ++|+|++++++||+  ..|+++|+++|+++|+++++|++|+.+...     
T Consensus       197 ~--~v~~vd------~~d~e~l~~ai~~-~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~-----  262 (464)
T PLN02509        197 V--VVKRVN------TTNLDEVAAAIGP-QTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLS-----  262 (464)
T ss_pred             e--EEEEeC------CCCHHHHHHhCCc-CCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCccccccC-----
Confidence            3  444432      2478999999977 89999999887775  779999999999999999999998776542     


Q ss_pred             CCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHH
Q 013217          218 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY  293 (447)
Q Consensus       218 ~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~  293 (447)
                      .|+. ++|++++|++|+++|+.   ||+++++++     .+.+++....... .+...... +  +..++.+.  .+..+
T Consensus       263 ~pl~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~-----~l~~~~~~~~~~~-g~~l~p~~-A--~l~lr~L~--tL~~R  331 (464)
T PLN02509        263 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE-----KLAKEVYFLQNSE-GSGLAPFD-C--WLCLRGIK--TMALR  331 (464)
T ss_pred             ChhhcCCcEEEecCcccccCCCccceeEEEeccH-----HHHHHHHHHHHhc-CCCcCHHH-H--HHHHhhhh--hHHHH
Confidence            2333 68999999999998865   588887764     4444433211111 11122222 1  22333332  35678


Q ss_pred             HHHHHHHHHHHHHHHHH-CCc
Q 013217          294 QNKVVSNCRALASRLVE-LGY  313 (447)
Q Consensus       294 ~~~~~~~~~~l~~~L~~-~g~  313 (447)
                      +++..+++..+++.|++ +.+
T Consensus       332 ~~r~~~nA~~la~~L~~~p~V  352 (464)
T PLN02509        332 IEKQQENARKIAMYLSSHPRV  352 (464)
T ss_pred             HHHHHHHHHHHHHHHhcCCCc
Confidence            99999999999999987 344

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.82  E-value=1.1e-17  Score=166.63  Aligned_cols=317  Identities=13%  Similarity=0.068  Sum_probs=193.3

Q ss_pred             CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcC----
Q 013217           33 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK----  108 (447)
Q Consensus        33 ~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~----  108 (447)
                      .|.+.+++.+.+.+ +..+.+.   . ..+...++|    ++++++++.+.     .+.++||++|+..++..+..    
T Consensus        59 ~~~i~~a~~~~~~~-~~~~~~~---~-~~~~~~~l~----~~l~~~~~~~~-----~~~~~SGs~A~e~al~~a~~~~~~  124 (401)
T PRK00854         59 HPKILAAMVEQAGR-LTLTSRA---F-RNDQLAPLY----EELAALTGSHK-----VLPMNSGAEAVETAIKAVRKWGYE  124 (401)
T ss_pred             CHHHHHHHHHHHhh-ccccccc---c-CCHHHHHHH----HHHHhhCCCCE-----EEEeCCcHHHHHHHHHHHHHHHHh
Confidence            78999998887754 2222211   1 123334454    57788888653     34469999999999887742    


Q ss_pred             -----CC-CEEEEecCCCCcccCCCccccccccc---cccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCC
Q 013217          109 -----PH-DRIMGLDLPHGGHLSHGFMTPKRRVS---GTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA  179 (447)
Q Consensus       109 -----pg-d~Vl~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~  179 (447)
                           +| ++|++.+..+.|..............   +......+..++      ..|++++++.+.+ ++++|++++++
T Consensus       125 ~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~le~~i~~-~~~aii~e~~~  197 (401)
T PRK00854        125 VKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVP------FGDAEALEAAITP-NTVAFLVEPIQ  197 (401)
T ss_pred             ccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeC------CCCHHHHHHHhCC-CeEEEEEcccc
Confidence                 24 68887775543321000000000000   000000111111      2589999999976 89999998776


Q ss_pred             CCC--CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC--CCCCC-cccEEEeCCCcccCC--CCCceEEeecCC
Q 013217          180 YPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTTTHKSLRG--PRGGMIFFKKDP  248 (447)
Q Consensus       180 ~~~--~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~--~~~~~-~~Di~~~s~~K~l~G--p~gG~i~~~~~~  248 (447)
                      +++  ..+    +++|+++|++||+++|+|++|. |+...+..  ....+ ..|++++|  |+|.|  +++|++++++  
T Consensus       198 ~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~-g~g~~g~~~~~~~~g~~~D~~~~~--K~l~gg~~~ig~v~~~~--  272 (401)
T PRK00854        198 GEAGVIIPPAGYFTRVRELCTANNVTLILDEIQT-GLGRTGKLLAEEHEGIEADVTLIG--KALSGGFYPVSAVLSNS--  272 (401)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-CCCCCchHhHHhhcCCCCCEEEec--ccccCCccCeEEEEEcH--
Confidence            654  444    8999999999999999999985 54333310  00111 36888775  99854  3678899887  


Q ss_pred             cchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeC-CCCCeeEEe
Q 013217          249 VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSG-GSDNHLVLV  327 (447)
Q Consensus       249 ~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~~~v  327 (447)
                          ++.+.+.........++ +....++..++++.+...   +..++..++.+++.+.|++.+...+.. .....++.+
T Consensus       273 ----~~~~~l~~~~~~~t~~~-~~~~~aa~~a~L~~l~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~g~~~~i  344 (401)
T PRK00854        273 ----EVLGVLKPGQHGSTFGG-NPLACAVARAALKVLTEE---GMIENAAEMGAYFLEGLRSIRSNIVREVRGRGLMLAV  344 (401)
T ss_pred             ----HHHhcccCCCCCCCCCc-CHHHHHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHhhccCceEEEeccceEEEE
Confidence                66666653322222333 444455555577665432   246777788888888888755432211 112333444


Q ss_pred             cCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          328 DLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       328 ~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      .+.+...+..++.+.|.+.||.+...         ..+.+|++++..++    ++|++++++.|++++.
T Consensus       345 ~~~~~~~~~~~~~~~L~~~GV~v~~~---------~~~~lR~~p~~~~t----~e~i~~~i~~l~~~l~  400 (401)
T PRK00854        345 ELEPEAGGARQYCEALKERGLLAKDT---------HDHTIRLAPPLVIT----REQVDWALEQIAKVLA  400 (401)
T ss_pred             EEecCchhHHHHHHHHHHCCeEEecC---------CCCEEEEeCCcccC----HHHHHHHHHHHHHHhh
Confidence            44332234577888888899998521         13589999987777    9999999999988764

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=99.82  E-value=2.3e-18  Score=176.47  Aligned_cols=291  Identities=15%  Similarity=0.124  Sum_probs=198.6

Q ss_pred             HHHHHHHHHcCCCCCccceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecc
Q 013217           70 LCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR  148 (447)
Q Consensus        70 ~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  148 (447)
                      .+++.++++||++...+     +++|| .+|.++++++++|||+||+....|-+.+.        .+.++|.  +++.+.
T Consensus       199 eAe~~aA~~fgAd~tyf-----vvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~~--------aLilsga--~PVYl~  263 (713)
T PRK15399        199 EAEEYIARTFGAEQSYI-----VTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAH--------LLMMSDV--VPIWLK  263 (713)
T ss_pred             HHHHHHHHHhCCCcEEE-----EeCChHHHHHHHHHHhcCCCCEEEeecccHHHHHH--------HHHHcCC--eeEEec
Confidence            56788999999998633     26776 89999999999999999998776665431        3445665  333322


Q ss_pred             cC-CCC---CCCCH-----HHHHHHhhhh----CCcEEEEcCCCCCC-CCChHHHHHHHHHhCCEE-EEehhhhcccccc
Q 013217          149 LD-EST---GLVDY-----DMLEKTAILF----RPKLIIAGASAYPR-DFDYPRMRQIADAVGALL-MMDMAHISGLVAA  213 (447)
Q Consensus       149 ~~-~~~---~~id~-----~~l~~~~~~~----~~klii~~~~~~~~-~~~~~~i~~ia~~~g~~l-ivD~a~~~g~~~~  213 (447)
                      .. +..   +.+++     +.+++++.++    +|+.++++.|+|-+ +.|++.|.++|   |+.+ ++|+||++.+.+.
T Consensus       264 P~~n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pTYdGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~  340 (713)
T PRK15399        264 PTRNALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTYDGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFH  340 (713)
T ss_pred             ccccccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCCCCceeeCHHHHHHHh---CCCEEEEeccchhhhhcC
Confidence            11 111   24555     8999888752    35688888888877 78999999998   6776 6999998665443


Q ss_pred             ccCC--CCCC---cccEE---EeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHH
Q 013217          214 SVVA--DPFK---YCDVV---TTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH  284 (447)
Q Consensus       214 ~~~~--~~~~---~~Di~---~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~  284 (447)
                      +..+  +++.   ++|.+   +-|+||+|++... ++|.++..     --.++++.+.....+++|++..+|++.+|.++
T Consensus       341 p~~~~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~~-----vd~~~~n~a~~m~~STSPsY~LmASLD~a~~~  415 (713)
T PRK15399        341 PIYQGKSGMSGERVPGKVIFETQSTHKMLAAFSQASLIHIKGE-----YDEETFNEAFMMHTSTSPSYPIVASVETAAAM  415 (713)
T ss_pred             cccCCcChhhCCCCCCeeeeeeeehhccccccchheeeeecCC-----CCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence            3222  2221   36766   9999999999876 88888653     12345655544445678999999999999988


Q ss_pred             hcChhHHHHHHHHHHHHHHHHHHHHHC-C------cEeeeC-------------C---------------CCCeeEEecC
Q 013217          285 AQSPEFKVYQNKVVSNCRALASRLVEL-G------YKLVSG-------------G---------------SDNHLVLVDL  329 (447)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~l~~~L~~~-g------~~~~~~-------------~---------------~~~~~~~v~~  329 (447)
                      +.....++.++...+.+..+++.|.+. +      ++++.+             +               -|.--+++..
T Consensus       416 m~~~~G~~l~~~~i~~a~~fR~~l~~~~~~~~~w~f~~~~~~~~~~~~~w~l~p~~~whgf~~~~~~~~~lDP~KltI~t  495 (713)
T PRK15399        416 LRGNPGKRLINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDADADHMFLDPVKVTILT  495 (713)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHhccccccCceeeecCccccCCccceecCCCcccccccccccccccCCCceEEEEe
Confidence            875445778888889999999988763 2      344321             0               0111122333


Q ss_pred             C---------CCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          330 R---------PMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       330 ~---------~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      +         ..|+++..+.++|+++||.+....         ...+=+    +.+.|.++++++++.++|.+.-+
T Consensus       496 ~g~~~~g~~~~~Gi~g~~l~~~L~e~gI~~E~~d---------~~~vL~----l~s~g~t~~~~~~L~~aL~~f~~  558 (713)
T PRK15399        496 PGMDEQGNMSEEGIPAALVAKFLDERGIVVEKTG---------PYNLLF----LFSIGIDKTKAMGLLRGLTEFKR  558 (713)
T ss_pred             cCcccccccccCCCCHHHHHHHHHHcCCEEEecC---------CCeEEE----EeCCCCCHHHHHHHHHHHHHHHH
Confidence            2         337888999999999999997531         113333    23345559999999998877633

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=99.82  E-value=4.2e-18  Score=164.77  Aligned_cols=263  Identities=18%  Similarity=0.165  Sum_probs=169.7

Q ss_pred             HHHHHHcCCCCCccceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC
Q 013217           73 KRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE  151 (447)
Q Consensus        73 ~~~~~~~g~~~~~~~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  151 (447)
                      +.+++.+|.+      +|.+++|+ +++..++  .+.|||+|++.+|.|+.+..        .+...|.  +++.+++  
T Consensus        56 ~~ia~~~~~~------~I~it~Gs~~al~~~~--~~~~gd~v~v~~P~y~~~~~--------~~~~~g~--~~~~v~~--  115 (330)
T PRK05664         56 AAARAYYGAP------QLLPVAGSQAAIQALP--RLRAPGRVGVLSPCYAEHAH--------AWRRAGH--QVRELDE--  115 (330)
T ss_pred             HHHHHHhCCC------CEEECcCHHHHHHHHH--HccCCCEEEEcCCChHHHHH--------HHHHcCC--eEEEech--
Confidence            5677788864      35568998 7776554  46899999999998766531        2334454  5555433  


Q ss_pred             CCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCc-ccE
Q 013217          152 STGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKY-CDV  225 (447)
Q Consensus       152 ~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~-~Di  225 (447)
                             +++++.++  ++++++++.|+||+  ..+   +++|.++|+++|+++|+|+++. ............+. .-+
T Consensus       116 -------~~~~~~~~--~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~-~~~~~~s~~~~~~~~~vi  185 (330)
T PRK05664        116 -------AEVEAALD--SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFM-DNTPQHSLAACAHRPGLI  185 (330)
T ss_pred             -------hhHhhhhc--CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcc-cCCCcccccccccCCCEE
Confidence                   34555553  67888888788886  555   4566667788999999999863 32211000010011 237


Q ss_pred             EEeCCCccc--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHH
Q 013217          226 VTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRA  303 (447)
Q Consensus       226 ~~~s~~K~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~  303 (447)
                      ++.|++|++  +|.|.||+++++      ++.+.+.....+...   +.....+...++..  ....+...+++.++++.
T Consensus       186 ~~~SfSK~~gl~GlRiG~~v~~~------~l~~~~~~~~~~~~~---~~~~~~~~~~~L~~--~~~~~~~~~~~~~~r~~  254 (330)
T PRK05664        186 VLRSFGKFFGLAGARLGFVLAEP------ALLRALAELLGPWTV---SGPTRWLAQAALAD--TPWQRRQRERLLAASQR  254 (330)
T ss_pred             EEeeccccccCCCcceEEEEeCH------HHHHHHHHhcCCCCC---CHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHH
Confidence            889999987  688889999987      677777665333221   22222233334432  12235567778888999


Q ss_pred             HHHHHHHCCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHH
Q 013217          304 LASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKE  383 (447)
Q Consensus       304 l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~d  383 (447)
                      +.+.|++.|++.. + ....++|+.+.    +..++.+.|.++||.+...    .    .++++||++..  +    +++
T Consensus       255 l~~~L~~~~~~~~-~-~~~~f~~~~~~----~~~~~~~~l~~~gi~v~~f----~----~~~~iRis~~~--~----~~~  314 (330)
T PRK05664        255 LAALLRRHGLTPA-G-GCALFQWVRTE----DAAALHEFLARRGILTRLF----E----QPASLRFGLPA--D----EAD  314 (330)
T ss_pred             HHHHHHHCCCccc-C-CcceEEEEecC----CHHHHHHHHHHCCeEEEEC----C----CCCeEEEECCC--C----HHH
Confidence            9999998876532 2 22345566542    5678888999999999631    1    13589999763  3    788


Q ss_pred             HHHHHHHHHHHHH
Q 013217          384 FVAIADFIHEGVE  396 (447)
Q Consensus       384 i~~l~~~i~~~l~  396 (447)
                      ++++.++|++..+
T Consensus       315 ~~~l~~al~~~~~  327 (330)
T PRK05664        315 WARLDQALLAYRK  327 (330)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999877654

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=99.82  E-value=3.9e-18  Score=169.19  Aligned_cols=300  Identities=19%  Similarity=0.204  Sum_probs=194.6

Q ss_pred             cCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh
Q 013217           27 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI  106 (447)
Q Consensus        27 ~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al  106 (447)
                      ..+..+++.+.+++...+...  -+.++.  +.   ...++|+.+..+++++++++....+  +.++.||+||+.++.+.
T Consensus        69 ~~~~~~~~~a~~~~~~~~~~n--l~d~~~--~p---~a~~~E~~~v~~l~~l~~~~~~~~G--~~t~GgTean~lal~aa  139 (460)
T COG0076          69 FCPTRVPPVAAELLVSALNKN--LGDPDE--SP---AAAELEERVVNMLSDLLGAPEEASG--TFTSGGTEANLLALLAA  139 (460)
T ss_pred             cCCCCCHHHHHHHHHHHHhhc--CCCccc--Ch---hHHHHHHHHHHHHHHHhCCCCCCce--EEEcChHHHHHHHHHHH
Confidence            344456677777887777652  233332  22   3568899999999999999744332  33355569998776654


Q ss_pred             cC-----C---CC------EEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCc-
Q 013217          107 LK-----P---HD------RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPK-  171 (447)
Q Consensus       107 ~~-----p---gd------~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~k-  171 (447)
                      ..     .   +.      +|+++.-.|.+.   .     +.+.+.|.+.+.++  .++.+..+|+++|++++++.... 
T Consensus       140 r~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~---~-----Kaa~~lG~~~~~v~--~~~~~~~id~~~l~~~i~~~t~~g  209 (460)
T COG0076         140 RERWRKRALAESGKPGGKPNIVCSETAHFSF---E-----KAARYLGLGLRRVP--TVPTDYRIDVDALEEAIDENTIGG  209 (460)
T ss_pred             HHHHHHHhhhcccccCCCCeEEecCcchhHH---H-----HHHHHhCCCceeEE--eccCccccCHHHHHHHHHhhccCc
Confidence            11     1   11      566665444332   1     45567777666666  44446899999999999984333 


Q ss_pred             EEEEc--CCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccc-cccCC----CCCCcccEEEeCCCcccCCCCC-ceEE
Q 013217          172 LIIAG--ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVA-ASVVA----DPFKYCDVVTTTTHKSLRGPRG-GMIF  243 (447)
Q Consensus       172 lii~~--~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~-~~~~~----~~~~~~Di~~~s~~K~l~Gp~g-G~i~  243 (447)
                      +|+..  .+.++...|+++|.++|+++++|++||+|. .|++. .....    ..++.+|.++.++||++..|.| |+++
T Consensus       210 ~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~-GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il  288 (460)
T COG0076         210 VVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAF-GGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVL  288 (460)
T ss_pred             eEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccc-cceeecccCccchhhcCCCCceEEEECcccccCCCCCceEEE
Confidence            14444  333334789999999999999999999985 44432 21111    1234799999999999988988 9999


Q ss_pred             eecCCcchhhHHHHhhh--ccCCC-------CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCC-c
Q 013217          244 FKKDPVLGVELESAINN--AVFPG-------LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG-Y  313 (447)
Q Consensus       244 ~~~~~~~~~~~~~~i~~--~~~~~-------~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~  313 (447)
                      ++++.    .+.+.+..  ...++       ..|+......++.++.++.+..+||.+..++..+++++|++.|.+.| +
T Consensus       289 ~rd~e----~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~  364 (460)
T COG0076         289 FRDEE----ALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDF  364 (460)
T ss_pred             EECHH----HhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            99851    13222221  11111       12333344667778888888888999999999999999999999976 9


Q ss_pred             EeeeCCCCCeeEEecCCCCC-CC-HHHHHHHHhhcCeEEccC
Q 013217          314 KLVSGGSDNHLVLVDLRPMG-ID-GARVEKILDMASITLNKN  353 (447)
Q Consensus       314 ~~~~~~~~~~~~~v~~~~~~-~~-~~~~~~~L~~~gI~v~~~  353 (447)
                      +++..+   .+.++.++.+. .+ ..+....+++.|..+...
T Consensus       365 e~~~~p---~l~~V~fr~~~~~~~~~~~~~~~~~~gw~v~~~  403 (460)
T COG0076         365 ELVNEP---ELPIVAFRLKDDEDTLADLSERLDRRGWQVPAQ  403 (460)
T ss_pred             EeecCC---ccceEEEEcCCcccchhchHHHHHhcCceeecc
Confidence            988754   22333333211 12 344555666678877653

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=99.82  E-value=1.6e-18  Score=170.12  Aligned_cols=219  Identities=16%  Similarity=0.133  Sum_probs=148.6

Q ss_pred             CCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccc
Q 013217           51 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT  130 (447)
Q Consensus        51 g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~  130 (447)
                      +|...|+  +++....+|    ++++++.|.+.     .+.++||+.|+.+++ ++++|||+|++.++.|++.+....  
T Consensus        41 ~~~y~r~--~~p~~~~Le----~~la~l~g~~~-----al~~~SG~~Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~~--  106 (380)
T PRK06176         41 GYEYSRS--GNPTRFALE----ELIADLEGGVK-----GFAFASGLAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLFD--  106 (380)
T ss_pred             CCcccCC--CChhHHHHH----HHHHHHhCCCC-----EEEECCHHHHHHHHH-HHcCCCCEEEEcCCChhHHHHHHH--
Confidence            3444443  456677887    57889999876     244599998887655 578999999999988876542110  


Q ss_pred             cccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhc
Q 013217          131 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHIS  208 (447)
Q Consensus       131 ~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~  208 (447)
                        ..+...|  +++..++      ..|++++++++++ +|++|++..|+||+  ..|+++|.++|+++|+++++|++++.
T Consensus       107 --~~~~~~g--i~v~~vd------~~d~e~l~~ai~~-~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~  175 (380)
T PRK06176        107 --KVLVKNG--LSCTIID------TSDLSQIKKAIKP-NTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFAT  175 (380)
T ss_pred             --HHHHhcC--eEEEEcC------CCCHHHHHHhcCc-CceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCccc
Confidence              0112223  3443322      2489999999987 89999998777775  78999999999999999999999865


Q ss_pred             cccccccCCCCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccCCCCCCC-CcHHHHHHHHHHHH
Q 013217          209 GLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGG-PHNHTIGGLAVCLK  283 (447)
Q Consensus       209 g~~~~~~~~~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~-p~~~~~aal~~al~  283 (447)
                      +..     ..|+. ++|++++|++|+++|+.   ||+++++++     ++.+++......  .|. .+...   .+..++
T Consensus       176 ~~~-----~~p~~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~-----~~~~~~~~~~~~--~G~~~~~~~---~~l~~~  240 (380)
T PRK06176        176 PYY-----QNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNE-----ALAQEIAFFQNA--IGGVLGPQD---SWLLQR  240 (380)
T ss_pred             ccc-----CCccccCCCEEEecCceeccCCccceeeEEEecHH-----HHHHHHHHHHHH--hcCCCCHHH---HHHHHh
Confidence            432     22333 69999999999998875   588888664     565555432211  111 11111   111222


Q ss_pred             HhcChhHHHHHHHHHHHHHHHHHHHHHC
Q 013217          284 HAQSPEFKVYQNKVVSNCRALASRLVEL  311 (447)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~  311 (447)
                      .+  ..+..+++++.+|+..+++.|++.
T Consensus       241 gl--~tl~~R~~~~~~~a~~la~~L~~~  266 (380)
T PRK06176        241 GI--KTLGLRMEAHQKNALCVAEFLEKH  266 (380)
T ss_pred             cc--CcHHHHHHHHHHHHHHHHHHHHhC
Confidence            22  235667888999999999999883

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.82  E-value=3.2e-18  Score=167.41  Aligned_cols=283  Identities=18%  Similarity=0.182  Sum_probs=173.5

Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217           60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  139 (447)
Q Consensus        60 g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g  139 (447)
                      +++....+|    +.++++++  .+    .+.++||+.|+..++.++++|||+|++.++.|++......    ..+...|
T Consensus        49 ~~p~~~~Le----~~lA~l~~--~~----~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~----~~l~~~G  114 (366)
T PRK07582         49 SNPTWRALE----AALGELEG--AE----ALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAR----EYLAPLG  114 (366)
T ss_pred             CCccHHHHH----HHHHHHcC--CC----EEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHH----HHHhcCe
Confidence            344566776    46777772  22    4556999999999999999999999999887765421100    0111234


Q ss_pred             ceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCC
Q 013217          140 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  217 (447)
Q Consensus       140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~  217 (447)
                        .+++.++.+. .    .+    .+.+ ++++|+++.++||+  ..|+++|.++|+++|+++++|++|..+.   +  .
T Consensus       115 --~~v~~v~~~~-~----~~----~~~~-~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~~~---~--~  177 (366)
T PRK07582        115 --VTVREAPTAG-M----AE----AALA-GADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATPL---G--Q  177 (366)
T ss_pred             --EEEEEECCCC-h----HH----Hhcc-CceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCCCcc---c--c
Confidence              3555544431 1    11    2233 78999998888886  6799999999999999999999975321   1  1


Q ss_pred             CCCC-cccEEEeCCCcccCCCCC---ceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHH
Q 013217          218 DPFK-YCDVVTTTTHKSLRGPRG---GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY  293 (447)
Q Consensus       218 ~~~~-~~Di~~~s~~K~l~Gp~g---G~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~  293 (447)
                      .|+. ++|++++|+||+++|+.|   |+++++++     ++.+++...... ..+.++... +  +.+++.+.  .+..+
T Consensus       178 ~p~~~g~Divv~S~sK~l~G~~g~~~G~v~~~~~-----~l~~~l~~~~~~-~g~~~~~~~-a--~l~~r~l~--tl~~R  246 (366)
T PRK07582        178 RPLELGADLVVASDTKALTGHSDLLLGYVAGRDP-----ELMAAVERWRLL-AGAIPGPFE-A--WLAHRSLG--TLGLR  246 (366)
T ss_pred             CchhcCCcEEEecccccccCCCCeeEEEEEcCcH-----HHHHHHHHHHHH-hCCCCCHHH-H--HHHHhccc--cHHHH
Confidence            2333 589999999999988765   88887653     666665532211 112223222 1  22333333  25667


Q ss_pred             HHHHHHHHHHHHHHHHH-CCcE-eeeCCCC---------------CeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCC
Q 013217          294 QNKVVSNCRALASRLVE-LGYK-LVSGGSD---------------NHLVLVDLRPMGIDGARVEKILDMASITLNKNSVP  356 (447)
Q Consensus       294 ~~~~~~~~~~l~~~L~~-~g~~-~~~~~~~---------------~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p  356 (447)
                      ++++.+|+..+++.|++ +.+. +..++-.               +.++.+++.    +.+++.++|+..++.....++-
T Consensus       247 ~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~----~~~~~~~~~~~l~~~~~~~s~G  322 (366)
T PRK07582        247 FARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA----DAAAAERFVAASRLVVAATSFG  322 (366)
T ss_pred             HHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC----CHHHHHHHHHhCCcceecccCC
Confidence            89999999999999998 3443 2222211               123334442    4567788888777755321111


Q ss_pred             CC------C----CCCCCCeEEEecCccccCCCCHHHHHHHHHHHH
Q 013217          357 GD------K----SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH  392 (447)
Q Consensus       357 ~~------~----~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~  392 (447)
                      +.      .    ....++-||+|.+..+.    ++.++.+.++|+
T Consensus       323 ~~~sl~~~~~~~~~~~~~~liR~svGlE~~----~dli~dl~~al~  364 (366)
T PRK07582        323 GVHTSADRRARWGDAVPEGFVRLSCGIEDT----DDLVADLERALD  364 (366)
T ss_pred             CccchhhhHHHcCCCCCCCeEEEEeccCCH----HHHHHHHHHHHh
Confidence            10      0    01223569999886554    555555555543

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.82  E-value=1.5e-18  Score=171.20  Aligned_cols=158  Identities=16%  Similarity=0.204  Sum_probs=120.8

Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217           60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  139 (447)
Q Consensus        60 g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g  139 (447)
                      +++.++.+|    +.++++.|...     .+.+.||+.|+.+++.++++|||+|+++.+.|++.....    ...+...|
T Consensus        59 ~nPtv~~lE----~~la~leg~~~-----av~~~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~----~~~l~~~G  125 (432)
T PRK06702         59 GNPTLAAFE----QKLAELEGGVG-----AVATASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLF----GVSLRKLG  125 (432)
T ss_pred             CCcHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHH----HHHHHHCC
Confidence            467788888    57889999876     244689999999999999999999999998887653210    00122334


Q ss_pred             ceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCC
Q 013217          140 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  217 (447)
Q Consensus       140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~  217 (447)
                      .  ++..++     ..+|++++++++++ +||+|++..++||.  ..|+++|+++|+++|+++++|++....     ...
T Consensus       126 i--~v~~vd-----~~~d~~~l~~~I~~-~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~tP-----~~~  192 (432)
T PRK06702        126 I--DVTFFN-----PNLTADEIVALAND-KTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATP-----YLC  192 (432)
T ss_pred             C--EEEEEC-----CCCCHHHHHHhCCc-CCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCCch-----hhC
Confidence            3  444432     24799999999988 99999998888886  779999999999999999999985322     223


Q ss_pred             CCCC-cccEEEeCCCcccCCCCC---ceEE
Q 013217          218 DPFK-YCDVVTTTTHKSLRGPRG---GMIF  243 (447)
Q Consensus       218 ~~~~-~~Di~~~s~~K~l~Gp~g---G~i~  243 (447)
                      .|+. ++||++.|.+|+++|..+   |.++
T Consensus       193 ~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~  222 (432)
T PRK06702        193 QAFEHGANIIVHSTTKYIDGHASSLGGIVI  222 (432)
T ss_pred             ChhhcCCCEEEEccccccCCCcceeceEEE
Confidence            4554 699999999999987654   5554

>PRK07671 cystathionine beta-lyase; Provisional

Probab=99.82  E-value=1.9e-18  Score=169.46  Aligned_cols=215  Identities=18%  Similarity=0.157  Sum_probs=148.0

Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217           60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  139 (447)
Q Consensus        60 g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g  139 (447)
                      +++..+.+|    +.+++++|.+.     .+.++||+.++.+++ ++++|||+|++.++.|++.+....    ..+...|
T Consensus        48 ~~p~~~~Le----~~lA~l~g~~~-----~~~~~sG~aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~~----~~~~~~G  113 (377)
T PRK07671         48 GNPTRAALE----ELIAVLEGGHA-----GFAFGSGMAAITAVM-MLFSSGDHVILTDDVYGGTYRVMT----KVLNRFG  113 (377)
T ss_pred             CChHHHHHH----HHHHHHhCCCc-----eEEeCCHHHHHHHHH-HHhCCCCEEEECCCccchHHHHHH----HHHhcCC
Confidence            456667777    57899999875     244689988776554 678999999999988876532110    0112233


Q ss_pred             ceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCC
Q 013217          140 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  217 (447)
Q Consensus       140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~  217 (447)
                        .+++.++      ..|++++++++++ +||+|+++.|+||+  ..|+++|.++|+++|+++++|+++..+..     .
T Consensus       114 --~~v~~v~------~~d~~~l~~ai~~-~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~~~-----~  179 (377)
T PRK07671        114 --IEHTFVD------TSNLEEVEEAIRP-NTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYW-----Q  179 (377)
T ss_pred             --eEEEEEC------CCCHHHHHHhcCC-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCcccc-----C
Confidence              3444432      2489999999987 89999999888875  77999999999999999999999754322     2


Q ss_pred             CCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHH
Q 013217          218 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY  293 (447)
Q Consensus       218 ~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~  293 (447)
                      .|+. ++|++++|++|+++|+.   +|+++++++     ++.+++....... .+..+.. .+  +.+++.+.  .+..+
T Consensus       180 ~p~~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~-----~l~~~~~~~~~~~-g~~~~~~-~a--~l~~~~l~--tl~~R  248 (377)
T PRK07671        180 SPISLGADIVLHSATKYLGGHSDVVAGLVVVNSP-----ELAEDLHFVQNST-GGILGPQ-DS--WLLLRGLK--TLGIR  248 (377)
T ss_pred             ChhhhCCeEEEecCcccccCCccceeEEEEeCcH-----HHHHHHHHHHHhh-cCCCCHH-HH--HHHHcCcC--hHHHH
Confidence            2343 68999999999999885   487877664     5666555432211 1222221 11  22333332  25567


Q ss_pred             HHHHHHHHHHHHHHHHH-CCc
Q 013217          294 QNKVVSNCRALASRLVE-LGY  313 (447)
Q Consensus       294 ~~~~~~~~~~l~~~L~~-~g~  313 (447)
                      ++++.+|+..+.+.|++ +++
T Consensus       249 ~~~~~~na~~la~~L~~~~~v  269 (377)
T PRK07671        249 MEEHETNSRAIAEFLNNHPAV  269 (377)
T ss_pred             HHHHHHHHHHHHHHHHcCCCe
Confidence            89999999999999987 344

>PRK05939 hypothetical protein; Provisional

Probab=99.82  E-value=5e-18  Score=167.23  Aligned_cols=219  Identities=16%  Similarity=0.113  Sum_probs=146.3

Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217           60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  139 (447)
Q Consensus        60 g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g  139 (447)
                      |++....+|    +.++++.|.+.     .+.++||+.|+.+++.++++|||+|++.++.|+++.....     .+...|
T Consensus        45 g~p~~~~lE----~~la~leg~~~-----~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~-----~l~~~G  110 (397)
T PRK05939         45 GTPTTAALE----AKITKMEGGVG-----TVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFG-----TLRGLG  110 (397)
T ss_pred             CCHHHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHHH-----HHHhcC
Confidence            677788888    57889999876     3556899999999999999999999999988877642211     122334


Q ss_pred             ceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCC
Q 013217          140 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  217 (447)
Q Consensus       140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~  217 (447)
                      .  +++.++.      .|++++++++++ +|++|++++++||+  ..|+++|+++|+++|+++++|++|+.+...     
T Consensus       111 ~--~v~~v~~------~d~e~l~~~l~~-~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~~~-----  176 (397)
T PRK05939        111 V--EVTMVDA------TDVQNVAAAIRP-NTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPWLF-----  176 (397)
T ss_pred             C--EEEEECC------CCHHHHHHhCCC-CCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCccccccc-----
Confidence            3  4444332      489999999987 89999998777775  679999999999999999999998766431     


Q ss_pred             CCCC-cccEEEeCCCcccCCCCC--ceEEeecCC-c--chhhHH-------------HHhhhccCCCCCCCCcHHHHHHH
Q 013217          218 DPFK-YCDVVTTTTHKSLRGPRG--GMIFFKKDP-V--LGVELE-------------SAINNAVFPGLQGGPHNHTIGGL  278 (447)
Q Consensus       218 ~~~~-~~Di~~~s~~K~l~Gp~g--G~i~~~~~~-~--~~~~~~-------------~~i~~~~~~~~~g~p~~~~~aal  278 (447)
                      .|.. ++|+++.|+||+++|+..  |.+++.+.. .  .+..+.             ..+...... ..|+...+. .+ 
T Consensus       177 ~~~~~gaDivv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~~~p~-~a-  253 (397)
T PRK05939        177 RPKDVGASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLR-DMGATLSSE-AA-  253 (397)
T ss_pred             CccccCCEEEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHH-hcCCCCCHH-HH-
Confidence            2332 699999999999987543  444443210 0  000000             111110000 012211111 11 


Q ss_pred             HHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC
Q 013217          279 AVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL  311 (447)
Q Consensus       279 ~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  311 (447)
                      +..++.+.  .+..+++++.+|+..+++.|++.
T Consensus       254 ~l~~rgl~--tl~~R~~~~~~na~~la~~L~~~  284 (397)
T PRK05939        254 HRIAIGAE--TLALRVDRSCSNALALAQFLEAH  284 (397)
T ss_pred             HHHHcCcC--cHHHHHHHHHHHHHHHHHHHHhC
Confidence            22333333  36678899999999999999884

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.82  E-value=3.8e-18  Score=169.35  Aligned_cols=154  Identities=20%  Similarity=0.174  Sum_probs=115.7

Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217           60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  139 (447)
Q Consensus        60 g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g  139 (447)
                      +++..+.+|    +.+++++|.+.     .+.++||+.|+.+++.++++|||+|++....|++......    ..+...|
T Consensus        67 ~~p~~~~Le----~~lA~l~g~~~-----av~~sSG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~----~~l~~~G  133 (436)
T PRK07812         67 MNPTQDVVE----QRIAALEGGVA-----ALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFH----YTLPKLG  133 (436)
T ss_pred             CCchHHHHH----HHHHHHhCCCe-----EEEEccHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHH----HHhhcCe
Confidence            455667777    58899999876     3556899999999999999999999999877766431100    0011123


Q ss_pred             ceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCC
Q 013217          140 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  217 (447)
Q Consensus       140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~  217 (447)
                        ++++.++ +    ..|++++++++++ +|++|++..++||.  ..|+++|.++|+++|+++++|++|+.+..     .
T Consensus       134 --i~v~~vd-d----~~d~e~l~~ai~~-~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~-----~  200 (436)
T PRK07812        134 --IEVSFVE-D----PDDLDAWRAAVRP-NTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYL-----I  200 (436)
T ss_pred             --EEEEEEC-C----CCCHHHHHHhCCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc-----C
Confidence              3444432 2    1389999999887 89999998777664  78999999999999999999999876644     2


Q ss_pred             CCCC-cccEEEeCCCcccCCCCC
Q 013217          218 DPFK-YCDVVTTTTHKSLRGPRG  239 (447)
Q Consensus       218 ~~~~-~~Di~~~s~~K~l~Gp~g  239 (447)
                      .|+. ++|+++.|+||+++|+.+
T Consensus       201 ~pl~~GaDivv~S~tK~lgg~G~  223 (436)
T PRK07812        201 RPLEHGADIVVHSATKYLGGHGT  223 (436)
T ss_pred             CchhcCCCEEEEecccccCCCCC
Confidence            3444 699999999999977653

>PRK06460 hypothetical protein; Provisional

Probab=99.81  E-value=6.9e-18  Score=165.57  Aligned_cols=213  Identities=17%  Similarity=0.162  Sum_probs=144.6

Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217           60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  139 (447)
Q Consensus        60 g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g  139 (447)
                      +++...++|    +.+++++|.+.+     +.++||++|+..++.++++|||+|++..+.+++.+...    ...+...|
T Consensus        43 ~~p~~~~L~----~~lA~l~g~~~~-----v~~~sG~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~----~~~~~~~G  109 (376)
T PRK06460         43 ANPTVLELT----KKIVELENAEMG-----VAFSSGMGAISTTALALLKPGNSVLVHRDMFGRSYRFF----TDYLKNWG  109 (376)
T ss_pred             CCccHHHHH----HHHHHHhCCCcE-----EEeCCHHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHH----HHHHHhhC
Confidence            345556666    678999998752     34588999999999999999999999877665432211    11223344


Q ss_pred             ceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCC
Q 013217          140 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  217 (447)
Q Consensus       140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~  217 (447)
                      .  ++..++.+      +.+.+++++++ +||+|++++++||+  ..|+++|.++|+++|+++++|++++.+..     .
T Consensus       110 ~--~v~~~~~~------~~~~l~~~~~~-~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~~~-----~  175 (376)
T PRK06460        110 V--NVDASNPG------SDNIIEKAKSK-RYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPIN-----Q  175 (376)
T ss_pred             c--EEEEECCC------CHHHHHHhcCC-CceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCcccc-----C
Confidence            4  33343332      23445555444 89999999888886  88999999999999999999999764421     1


Q ss_pred             CCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHH
Q 013217          218 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY  293 (447)
Q Consensus       218 ~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~  293 (447)
                      .++. ++|+++.|+||+++|++   +|+++.++      ++.+++.....+... +...  ..+ +.+++..  ..++.+
T Consensus       176 ~~l~~~~divv~S~sK~l~G~~~~~~G~~~~~~------~l~~~l~~~~~~~g~-~~~~--~~a-~~~l~~~--~~l~~r  243 (376)
T PRK06460        176 KPLELGADIVVHSASKFLAGHNDVIAGLAAGYG------KLLNVIDQMRRTLGT-SLDP--HAA-YLTLRGI--KTLKIR  243 (376)
T ss_pred             ChhhcCCCEEEeecceeccCCCCceEEEEecCH------HHHHHHHHHHHhcCC-CCCH--HHH-HHHHhch--hhHHHH
Confidence            1222 58999999999998875   68888876      677766543322211 1222  111 2233322  345778


Q ss_pred             HHHHHHHHHHHHHHHHHC
Q 013217          294 QNKVVSNCRALASRLVEL  311 (447)
Q Consensus       294 ~~~~~~~~~~l~~~L~~~  311 (447)
                      ++++.+|++.+++.|++.
T Consensus       244 ~~~~~~n~~~l~~~L~~~  261 (376)
T PRK06460        244 MDVINRNAEQIAEFLEGH  261 (376)
T ss_pred             HHHHHHHHHHHHHHHHcC
Confidence            999999999999999873

>PRK05967 cystathionine beta-lyase; Provisional

Probab=99.81  E-value=4.9e-18  Score=165.86  Aligned_cols=214  Identities=17%  Similarity=0.061  Sum_probs=147.8

Q ss_pred             CchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccc
Q 013217           59 GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGT  138 (447)
Q Consensus        59 ~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~  138 (447)
                      .+++..+.+|    ++++.+-+.+.     .+.++||+.|+.+++.++++|||+|+++++.|+++.....    ..+...
T Consensus        61 ~gnPt~~~Le----~~la~le~~~~-----~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~----~~l~~~  127 (395)
T PRK05967         61 RGTPTTDALC----KAIDALEGSAG-----TILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCD----TMLKRL  127 (395)
T ss_pred             CCChHHHHHH----HHHHHHhCCCC-----EEEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHH----HHHHhc
Confidence            5677778887    56777776554     3556889999999999999999999999988877532100    012233


Q ss_pred             cceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccC
Q 013217          139 SIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV  216 (447)
Q Consensus       139 g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~  216 (447)
                      |.  ++..++.      -+.+.+++++++ +||+|++++++||.  ..|+++|+++|+++|+++++|+++..+..     
T Consensus       128 Gi--~v~~vd~------~~~e~l~~al~~-~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~~-----  193 (395)
T PRK05967        128 GV--EVEYYDP------EIGAGIAKLMRP-NTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLY-----  193 (395)
T ss_pred             Ce--EEEEeCC------CCHHHHHHhcCc-CceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCcee-----
Confidence            43  4434322      135789999987 89999999887775  67999999999999999999999754422     


Q ss_pred             CCCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHH
Q 013217          217 ADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKV  292 (447)
Q Consensus       217 ~~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~  292 (447)
                      ..|+. ++|+++.|.+|+++|..   +|+++.++      +..+++......  .|+...+. . .+..++.+.  .+.-
T Consensus       194 ~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~------~~~~~l~~~~~~--~G~~~~p~-d-a~l~~rgl~--Tl~l  261 (395)
T PRK05967        194 FRPLDFGVDISIHAATKYPSGHSDILLGTVSANE------KCWPQLLEAHGT--LGLCAGPD-D-TYQILRGLR--TMGI  261 (395)
T ss_pred             cChhHcCCCEEEEecccccCCCCCeeEEEEEcCH------HHHHHHHHHHHH--cCCCCCHH-H-HHHHHcCcc--cHHH
Confidence            34555 69999999999987754   37666555      455544422111  12222111 1 222344433  3567


Q ss_pred             HHHHHHHHHHHHHHHHHHC
Q 013217          293 YQNKVVSNCRALASRLVEL  311 (447)
Q Consensus       293 ~~~~~~~~~~~l~~~L~~~  311 (447)
                      +++++.+|+..+++.|++.
T Consensus       262 R~~~~~~na~~lA~~L~~h  280 (395)
T PRK05967        262 RLEHHRKSALEIARWLEGR  280 (395)
T ss_pred             HHHHHHHHHHHHHHHHHhC
Confidence            8999999999999999883

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.81  E-value=2.1e-17  Score=163.38  Aligned_cols=323  Identities=18%  Similarity=0.155  Sum_probs=194.9

Q ss_pred             CeeEecC--CC---CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH
Q 013217           22 SLELIAS--EN---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS   96 (447)
Q Consensus        22 ~i~l~~~--~n---~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs   96 (447)
                      .|++..+  .|   ..+|.+.+++.+.+...   +....+ |. .+...+++    +++++++|.+.     .+...||+
T Consensus        29 ~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~---~~~~~~-~~-~~~~~~l~----~~la~~~g~~~-----~~~~~sg~   94 (379)
T TIGR00707        29 YLDFVAGIAVNSLGHAHPKLVEALKEQLEKL---VHVSNL-YY-TEPQEELA----EKLVEHSGADR-----VFFCNSGA   94 (379)
T ss_pred             EEEcCcchhhccCCCCCHHHHHHHHHHHhhc---cccccc-cC-CHHHHHHH----HHHHhhCCCCE-----EEEeCCcH
Confidence            4565442  34   33589999988776542   111122 22 23344454    68888999763     24457888


Q ss_pred             HHHHHHHHHh---cC----CCCEEEEecCCCCcccCCCccccccccccccce-eEEEecccCCCC-C--CCCHHHHHHHh
Q 013217           97 PANFEVYTAI---LK----PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDEST-G--LVDYDMLEKTA  165 (447)
Q Consensus        97 ~a~~~~~~al---~~----pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~-~--~id~~~l~~~~  165 (447)
                      +|+..++..+   ..    +||+|+++++.|.++.....       ...+.. +.....++..+. .  ..|++++++.+
T Consensus        95 ~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~  167 (379)
T TIGR00707        95 EANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGAL-------SATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAI  167 (379)
T ss_pred             HHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHH-------HhcCChhhhccCCCCCCCceeeCCCCHHHHHHHh
Confidence            9999888755   22    47999999887655421110       000100 000001111110 1  12899999998


Q ss_pred             hhhCCcEEEEcCCCCCC-C--C---ChHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccC-
Q 013217          166 ILFRPKLIIAGASAYPR-D--F---DYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLR-  235 (447)
Q Consensus       166 ~~~~~klii~~~~~~~~-~--~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~-  235 (447)
                      .+ ++++|+++++++++ .  .   ++++|.++|+++|+++++|++|. |+...+.. . .... ..|+++  ++|+++ 
T Consensus       168 ~~-~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~-~~~~~g~~~~~~~~~~~~d~~t--~sK~~~~  243 (379)
T TIGR00707       168 DD-ETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQT-GIGRTGKFFAYEHYGIEPDIIT--LAKGLGG  243 (379)
T ss_pred             hh-CeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCccchhhhHHhcCCCCCEEE--EcccccC
Confidence            77 89999997555443 2  2   26899999999999999999984 54332211 0 0011 246654  579985 


Q ss_pred             CCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEe
Q 013217          236 GPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKL  315 (447)
Q Consensus       236 Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~  315 (447)
                      |.|.|+++.++      ++.+.+.........+ .+....++..++++.+...   ++.+++.++++.+++.|.+.+...
T Consensus       244 G~riG~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~aa~aaL~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~  313 (379)
T TIGR00707       244 GVPIGATLAKE------EVAEAFTPGDHGSTFG-GNPLACAAALAVLEVIEKE---RLLENVKEKGDYFKERLEELGKNY  313 (379)
T ss_pred             CcccEEEEEcH------HHHhhhcCCCCCCCCC-CCHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHhhC
Confidence            56779999887      6777766532222222 3445555666677765432   356677778888888877643222


Q ss_pred             e-eC-CCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217          316 V-SG-GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       316 ~-~~-~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~  393 (447)
                      . .. .....++++.+..   +..++.+.|.++||.+..    .     ..+.+|++++..++    +++++++.+.|++
T Consensus       314 ~~~~~~~~g~~~~~~~~~---~~~~~~~~l~~~Gv~v~~----~-----~~~~lRi~~~~~~t----~~~i~~~~~~l~~  377 (379)
T TIGR00707       314 PNKEVRGKGLMLGIELEA---PCKDIVKKALEKGLLVNC----A-----GPKVLRFLPPLIIT----KEEIDEAVSALEE  377 (379)
T ss_pred             CCCccccCceEEEEEecC---cHHHHHHHHHHCCcEEee----C-----CCCEEEEECCCcCC----HHHHHHHHHHHHH
Confidence            1 10 0123445666543   357888889999999953    1     13589999887676    9999999999977


Q ss_pred             HH
Q 013217          394 GV  395 (447)
Q Consensus       394 ~l  395 (447)
                      ++
T Consensus       378 ~~  379 (379)
T TIGR00707       378 AI  379 (379)
T ss_pred             hC
Confidence            53

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.81  E-value=7.2e-18  Score=167.55  Aligned_cols=152  Identities=20%  Similarity=0.216  Sum_probs=117.2

Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217           60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  139 (447)
Q Consensus        60 g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g  139 (447)
                      +++.+.++|    +.++++.|.++.     +.+.||+.|+.+++.+++++||+|++++..|++......    ..+...|
T Consensus        62 ~~p~~~~le----~~lA~l~g~~~a-----v~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~----~~l~~~G  128 (433)
T PRK08134         62 SNPTVAVLE----ERVAALEGGVGA-----IATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLH----YTLRRFG  128 (433)
T ss_pred             cChHHHHHH----HHHHHHhCCCcE-----EEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHH----HHHhhCC
Confidence            456677777    578899998762     446899999999999999999999999988876532100    0011233


Q ss_pred             ceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCC
Q 013217          140 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  217 (447)
Q Consensus       140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~  217 (447)
                        ++++.++.+      |++++++++++ +||+|++..++||+  ..|+++|+++|+++|+++++|++|+.+...     
T Consensus       129 --i~v~~vd~~------d~~~l~~~i~~-~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~~-----  194 (433)
T PRK08134        129 --IETTFVKPG------DIDGWRAAIRP-NTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLL-----  194 (433)
T ss_pred             --eEEEEECCC------CHHHHHHhcCC-CCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCcccccC-----
Confidence              355554332      79999999987 99999998777774  789999999999999999999999877552     


Q ss_pred             CCCC-cccEEEeCCCcccCCCC
Q 013217          218 DPFK-YCDVVTTTTHKSLRGPR  238 (447)
Q Consensus       218 ~~~~-~~Di~~~s~~K~l~Gp~  238 (447)
                      .|+. ++|++++|.||+++|+.
T Consensus       195 ~pl~~GaD~vv~S~tK~l~g~g  216 (433)
T PRK08134        195 RPFEHGADLVYHSATKFLGGHG  216 (433)
T ss_pred             CchhcCCCEEEeccccccCCCC
Confidence            3444 69999999999997765

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.80  E-value=7.2e-18  Score=167.45  Aligned_cols=166  Identities=22%  Similarity=0.188  Sum_probs=120.3

Q ss_pred             CCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccc
Q 013217           51 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT  130 (447)
Q Consensus        51 g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~  130 (447)
                      +|...|+  +++....+|    +.++++.|.+.     .+.++||++|+.+++.++++|||+|++..+.|++.+....  
T Consensus        49 ~~~y~r~--~~pt~~~Le----~~lA~l~g~~~-----~l~~ssG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~--  115 (425)
T PRK06084         49 GNIYTRI--MNPTNDVLE----QRVAALEGGVG-----ALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLA--  115 (425)
T ss_pred             CccccCC--CCchHHHHH----HHHHHHhCCCc-----eeEehhHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHH--
Confidence            3444443  445566777    57889999764     2446899999999999999999999999888775432110  


Q ss_pred             cccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhc
Q 013217          131 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHIS  208 (447)
Q Consensus       131 ~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~  208 (447)
                        ..+...|  +++..++      ..|++++++++++ +|++|++.+++||+  ..|+++|.++|+++|+++++|++|+.
T Consensus       116 --~~l~~~g--i~v~~~d------~~d~e~le~ai~~-~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~  184 (425)
T PRK06084        116 --HTLPRIG--IETRFAA------HDDIAALEALIDE-RTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVAT  184 (425)
T ss_pred             --Hhcccce--eEEEEEC------CCCHHHHHHHhcc-CCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcc
Confidence              0111122  2333322      2489999999987 89999998777775  77999999999999999999999876


Q ss_pred             cccccccCCCCCC-cccEEEeCCCcccCCCC---CceEEee
Q 013217          209 GLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFK  245 (447)
Q Consensus       209 g~~~~~~~~~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~  245 (447)
                      +..     ..|+. ++|++++|+||+++|+.   ||+++.+
T Consensus       185 ~~~-----~~p~~~gaDivv~S~tK~l~G~g~~~gG~v~~~  220 (425)
T PRK06084        185 PVL-----CRPFEHGADIVVHSLTKYIGGHGTSIGGIVVDS  220 (425)
T ss_pred             ccc-----CChhhcCCCEEEECchhcccccccceeEEEEeC
Confidence            643     23444 59999999999998764   3656543

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.80  E-value=1.4e-18  Score=169.09  Aligned_cols=225  Identities=24%  Similarity=0.248  Sum_probs=150.4

Q ss_pred             CCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcc
Q 013217           50 EGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFM  129 (447)
Q Consensus        50 ~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~  129 (447)
                      .+|...|  .|++....+|    ++++++.|.+.     .+...||..|+.+++.+++++||+|++.+..|++...... 
T Consensus        45 ~~~~Y~R--~gnPt~~~le----~~la~Le~g~~-----a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~-  112 (386)
T PF01053_consen   45 KGYIYSR--YGNPTVRALE----QRLAALEGGED-----ALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLE-  112 (386)
T ss_dssp             SSCSBTT--TC-HHHHHHH----HHHHHHHT-SE-----EEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHH-
T ss_pred             CCcceec--cccccHHHHH----HHHHHhhcccc-----eeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhh-
Confidence            3444444  4678888888    57888998864     2445899999999999999999999999887776532110 


Q ss_pred             ccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhC-CEEEEehhh
Q 013217          130 TPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVG-ALLMMDMAH  206 (447)
Q Consensus       130 ~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g-~~livD~a~  206 (447)
                         ......|  +++..+  |    .-|++++++++++ ++++|++..+.||.  ..|+++|+++|+++| +++++|.+.
T Consensus       113 ---~~l~~~g--v~v~~~--d----~~d~~~l~~~l~~-~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~  180 (386)
T PF01053_consen  113 ---ELLPRFG--VEVTFV--D----PTDLEALEAALRP-NTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTF  180 (386)
T ss_dssp             ---HCHHHTT--SEEEEE--S----TTSHHHHHHHHCT-TEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTT
T ss_pred             ---hhhcccC--cEEEEe--C----chhHHHHHhhccc-cceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccc
Confidence               0111223  344442  2    2589999999988 99999999888887  789999999999999 999999986


Q ss_pred             hccccccccCCCCCC-cccEEEeCCCcccCCCC---CceEEeec-CCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHH
Q 013217          207 ISGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKK-DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVC  281 (447)
Q Consensus       207 ~~g~~~~~~~~~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~-~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~a  281 (447)
                      +.+.     ...|+. ++|+++.|.+|++.|..   +|.+++++ +     ++.+++.....  ..|....+ ..+ +..
T Consensus       181 atp~-----~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~-----~~~~~l~~~~~--~~G~~~~p-~da-~ll  246 (386)
T PF01053_consen  181 ATPY-----NQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSS-----ELYDRLREFRR--LLGATLSP-FDA-WLL  246 (386)
T ss_dssp             THTT-----TC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHH-----HHHHHHHHHHH--HHT-B--H-HHH-HHH
T ss_pred             ccee-----eeccCcCCceEEEeeccccccCCcceeeEEEEECchh-----hhhhhhcchhh--hcCccchH-HHH-HHH
Confidence            5542     234555 69999999999998876   48888765 2     55555543211  11221111 111 223


Q ss_pred             HHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcE
Q 013217          282 LKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYK  314 (447)
Q Consensus       282 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  314 (447)
                      ++.+.  .+.-++++..+|+..+++.|++. .+.
T Consensus       247 ~rgl~--Tl~~R~~~~~~nA~~lA~~L~~hp~V~  278 (386)
T PF01053_consen  247 LRGLR--TLPLRMERQNENAEALAEFLEEHPKVK  278 (386)
T ss_dssp             HHHHT--THHHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred             hcCCC--cHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            44443  36778999999999999999984 443

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=99.80  E-value=1.7e-17  Score=155.60  Aligned_cols=295  Identities=21%  Similarity=0.201  Sum_probs=202.5

Q ss_pred             HHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc----C----CCCEEEEecCCCCcccCCCccccccccccccce
Q 013217           70 LCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----K----PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY  141 (447)
Q Consensus        70 ~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~----~----pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~  141 (447)
                      ..++|++++.|.+.    +.+|+.+|+++-++-++.+-    .    ..+.||+++-.||-+..        ...+.  +
T Consensus       113 ~Lq~~L~~ITG~Da----vsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPA--------SAam~--G  178 (496)
T COG1003         113 ELQEWLKEITGMDA----VSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPA--------SAAMA--G  178 (496)
T ss_pred             HHHHHHHHhcCCce----eeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChh--------hHhhc--C
Confidence            34479999999997    68999999966555444431    2    33689999888876532        12233  4


Q ss_pred             eEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCC
Q 013217          142 FESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADP  219 (447)
Q Consensus       142 ~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~  219 (447)
                      ++++.++.+ ++|.+|+|+|++++.+ ++..+.++.|++-+  ..++.+|+++.+++|..|..|+|..-+++..   ..|
T Consensus       179 ~~VV~V~~~-~~G~VDlddLk~k~~~-~~AalMiTnPsT~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~---~rP  253 (496)
T COG1003         179 FKVVVVKCD-ENGNVDLDDLRAKAED-NLAALMITNPSTLGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGL---ARP  253 (496)
T ss_pred             ceEEEEecC-CCCCccHHHHHHHhcc-ceeEEEeccCcccccchhhHHHHHHHHHHcCCEEEecCcchhhhhcc---ccc
Confidence            688888887 6789999999999986 88888888887777  4589999999999999999999965443321   233


Q ss_pred             CC-cccEEEeCCCcccCCCCC------ceEEeecCCcchhhHHHHhhh----------c----------cCCCCCCCCcH
Q 013217          220 FK-YCDVVTTTTHKSLRGPRG------GMIFFKKDPVLGVELESAINN----------A----------VFPGLQGGPHN  272 (447)
Q Consensus       220 ~~-~~Di~~~s~~K~l~Gp~g------G~i~~~~~~~~~~~~~~~i~~----------~----------~~~~~~g~p~~  272 (447)
                      -+ ++|++-...||||+.|.|      |-|.++..      +...+-.          .          .....+|+..+
T Consensus       254 Gd~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~------L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~~i  327 (496)
T COG1003         254 GDMGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAH------LAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSASI  327 (496)
T ss_pred             cccccceEEeecccccccCCCCCCCCCCceehHhh------ccccCCCCcccCCCccccccCCCCccceeeccccCcchH
Confidence            33 689999999999975543      56776652      2221111          0          00001233332


Q ss_pred             HHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCC--CCeeEEecCC----CCCCCHHHHHHHHhhc
Q 013217          273 HTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS--DNHLVLVDLR----PMGIDGARVEKILDMA  346 (447)
Q Consensus       273 ~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~--~~~~~~v~~~----~~~~~~~~~~~~L~~~  346 (447)
                      ..++  +.-++.+..+|++...+.-.-|+++++++|+. .+++...+.  ..|-+++|.+    ..|++..++.++|.++
T Consensus       328 l~~a--~~YI~~mG~~GL~~ase~AvLNANYia~rL~~-~y~~~y~~~~~~~HE~ild~r~l~~~~Gv~~~DvAKrLlD~  404 (496)
T COG1003         328 LPIA--WAYIRMMGADGLKQASEVAVLNANYIARRLKG-YYPVPYTGENRVAHECILDARPLKKETGVRALDVAKRLLDY  404 (496)
T ss_pred             HHHH--HHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhh-cCccccCCCCcceeEEEeechHhHhhcCCcHHHHHHHHHhc
Confidence            2221  22234455567788888889999999999987 566654333  5688888887    3578889999999999


Q ss_pred             CeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHHHH
Q 013217          347 SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLE  400 (447)
Q Consensus       347 gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~~  400 (447)
                      |+..-..+.|.    ...+.+-|-....    -+++++|++++++..+.+.+..
T Consensus       405 GfHaPT~~FPl----iV~~tLMIEPTEs----Esk~eLDrf~dami~I~~Ea~~  450 (496)
T COG1003         405 GFHAPTMYFPL----IVAGTLMIEPTES----ESKEELDRFIDAMIAIREEADA  450 (496)
T ss_pred             CCCCCcccCcc----ccccceeecCCCC----CCHHHHHHHHHHHHHHHHHHHh
Confidence            99864433342    1234555544333    3499999999999888876643

>PRK06434 cystathionine gamma-lyase; Validated

Probab=99.80  E-value=5.7e-18  Score=165.29  Aligned_cols=212  Identities=16%  Similarity=0.116  Sum_probs=144.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccc
Q 013217           59 GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGT  138 (447)
Q Consensus        59 ~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~  138 (447)
                      .+++.++++|    ++++++.|.+.     .+.++||+.|+.+++.++++|||+|+++...|++.+...    ...+...
T Consensus        61 ~~~P~~~~lE----~~la~leg~~~-----av~~sSG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~----~~~~~~~  127 (384)
T PRK06434         61 WGNPTVQAFE----EKYAVLENAEH-----ALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFF----NKVLKTL  127 (384)
T ss_pred             CCChhHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHH----HHHHHhc
Confidence            3678889998    57889999875     356699999999999999999999999877666654211    0122233


Q ss_pred             cceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccC
Q 013217          139 SIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV  216 (447)
Q Consensus       139 g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~  216 (447)
                      |  ++++.+++++. ..++       ++..++++|++..+.||+  ..|+++|+++|+++|  +++|+++..+.     .
T Consensus       128 G--i~v~fvd~~~~-~~~~-------l~~~~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~~s~~-----~  190 (384)
T PRK06434        128 G--IHVDYIDTDRL-NSLD-------FDPSNYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATFASPY-----N  190 (384)
T ss_pred             C--cEEEEECCCCh-hhee-------ecCCCeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCCCCcc-----c
Confidence            4  35555555421 1122       222378999998777665  789999999999998  56799975442     2


Q ss_pred             CCCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHH
Q 013217          217 ADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKV  292 (447)
Q Consensus       217 ~~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~  292 (447)
                      ..|++ ++|++++|.||+++|+.   ||+++++++     ++.+++......  .|......-|+  ..++.+.  .+..
T Consensus       191 ~~pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~-----~~~~~~~~~~~~--~G~~~~~~~A~--l~~~gL~--tL~~  259 (384)
T PRK06434        191 QNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNK-----SIFNNLVERRKT--LGSNPDPIQAY--LALRGLK--TLGL  259 (384)
T ss_pred             CCchhcCCCEEEeecccccCCCCCceEEEEecCcH-----HHHHHHHHHHHh--cCCCCCHHHHH--HHHhCCC--cHHH
Confidence            33454 69999999999998865   688888664     666655432111  12211122222  2344443  4678


Q ss_pred             HHHHHHHHHHHHHHHHHHC
Q 013217          293 YQNKVVSNCRALASRLVEL  311 (447)
Q Consensus       293 ~~~~~~~~~~~l~~~L~~~  311 (447)
                      ++++..+++..+++.|++.
T Consensus       260 R~~r~~~~a~~~a~~L~~~  278 (384)
T PRK06434        260 RMEKHNKNGMELARFLRDS  278 (384)
T ss_pred             HHHHHHHHHHHHHHHHHcC
Confidence            8999999999999999883

>PLN02368 alanine transaminase

Probab=99.80  E-value=1.2e-17  Score=165.06  Aligned_cols=243  Identities=10%  Similarity=0.044  Sum_probs=159.6

Q ss_pred             HHHHHHHHHHHHHHHcCCC--CCccceeeecCCcH-HHHHHHHHHhc-CCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217           64 IDELETLCQKRALAAFNLD--ENKWGVNVQPLSGS-PANFEVYTAIL-KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  139 (447)
Q Consensus        64 ~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sGs-~a~~~~~~al~-~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g  139 (447)
                      ...+.+.+.+++.+.+|.+  ++    +|.+|+|+ +++..++.+++ +|||+|++.+|.|..+..        .+...|
T Consensus       109 ~~~LR~aia~~~~~~~g~~~~~~----~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~~--------~~~~~g  176 (407)
T PLN02368        109 LPGVRKEVAEFIERRDGYPSDPE----LIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYSA--------TISLLG  176 (407)
T ss_pred             CHHHHHHHHHHHHHhcCCCCChh----hEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHHH--------HHHHcC
Confidence            3455555556777777754  44    45568887 78888899987 799999999998876532        234555


Q ss_pred             ceeEEEecccCC-CCCCCCHHHHHHHhhhh-----CCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhc
Q 013217          140 IYFESMPYRLDE-STGLVDYDMLEKTAILF-----RPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHIS  208 (447)
Q Consensus       140 ~~~~~~~~~~~~-~~~~id~~~l~~~~~~~-----~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~  208 (447)
                      .  +++++++++ +++.+|++++++.+++.     ++|+++++.|+||+  ..+   +++|.++|++||+++|+|+++ .
T Consensus       177 ~--~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y-~  253 (407)
T PLN02368        177 G--TLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVY-Q  253 (407)
T ss_pred             C--EEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccc-c
Confidence            4  556666654 34789999999988642     68988888788886  444   578888899999999999985 5


Q ss_pred             ccccccc--CCCC------C----C-c-ccEEEeCCCccc---CCCCCceEEe---ecCCcchhhHHHHhhhccCCCCCC
Q 013217          209 GLVAASV--VADP------F----K-Y-CDVVTTTTHKSL---RGPRGGMIFF---KKDPVLGVELESAINNAVFPGLQG  268 (447)
Q Consensus       209 g~~~~~~--~~~~------~----~-~-~Di~~~s~~K~l---~Gp~gG~i~~---~~~~~~~~~~~~~i~~~~~~~~~g  268 (447)
                      .+++.+.  +.+.      +    . + .-+++.|++|++   +|+|.||+++   ++      ++.+.+...... ..+
T Consensus       254 ~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~------~li~~~~~~~~~-~~~  326 (407)
T PLN02368        254 QNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP------KTVEEIYKVASI-ALS  326 (407)
T ss_pred             ccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCH------HHHHHHHHHhcc-cCC
Confidence            5554331  1110      0    0 1 237789999986   5999999985   44      566666654211 223


Q ss_pred             CCcHHHHHHHHHHHHHhc--Ch---hH----HHHHHHHHHHHHHHHHHHHHC-CcEeeeCCCCCeeEEecCC
Q 013217          269 GPHNHTIGGLAVCLKHAQ--SP---EF----KVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLVLVDLR  330 (447)
Q Consensus       269 ~p~~~~~aal~~al~~~~--~~---~~----~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~v~~~  330 (447)
                       ++.....++..+++.-.  ..   .+    +++.+.+.++++.+.+.|++. |+.+..+ ...+++|.++.
T Consensus       327 -~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~~~P-~Gafy~~~~i~  396 (407)
T PLN02368        327 -PNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVCNFT-EGAMYSFPQIK  396 (407)
T ss_pred             -CCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEeCCC-CeeeEeccCCC
Confidence             33333333344553210  00   12    335677788889999999984 8876543 44666776664

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.80  E-value=9.4e-18  Score=166.79  Aligned_cols=159  Identities=21%  Similarity=0.161  Sum_probs=118.7

Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217           60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  139 (447)
Q Consensus        60 g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g  139 (447)
                      +++....+|    +.++++.|.+.     .+.++||+.|+.+++.++++|||+|++.++.|++.+...    ...+...|
T Consensus        62 ~~p~~~~Le----~~lA~leg~~~-----al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~----~~~~~~~G  128 (431)
T PRK08248         62 MNPTTDVFE----KRIAALEGGIG-----ALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLF----AHTLPKLG  128 (431)
T ss_pred             CCchHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHH----HHHHHhCC
Confidence            456677787    57889999765     355689999999999999999999999998887653211    01122234


Q ss_pred             ceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCC
Q 013217          140 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  217 (447)
Q Consensus       140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~  217 (447)
                        .+++.++.      .|++++++++++ ++++|++.+++||+  ..|+++|.++|+++|+++++|++++.+..     .
T Consensus       129 --v~v~~vd~------~d~e~l~~ai~~-~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~~~-----~  194 (431)
T PRK08248        129 --ITVKFVDP------SDPENFEAAITD-KTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYL-----L  194 (431)
T ss_pred             --EEEEEECC------CCHHHHHHhcCC-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCcccc-----C
Confidence              35555432      489999999987 89999998777775  78999999999999999999999764432     2


Q ss_pred             CCCC-cccEEEeCCCcccCCCCC---ceEEee
Q 013217          218 DPFK-YCDVVTTTTHKSLRGPRG---GMIFFK  245 (447)
Q Consensus       218 ~~~~-~~Di~~~s~~K~l~Gp~g---G~i~~~  245 (447)
                      .|+. ++|+++.|+||+++|+..   |+++.+
T Consensus       195 ~pl~~gaDivv~S~tK~lgg~g~~~Gg~v~~~  226 (431)
T PRK08248        195 RPIEHGADIVVHSATKFIGGHGTSIGGVIVDS  226 (431)
T ss_pred             ChhHcCCCEEEEcCccccCCCCCceEEEEEeC
Confidence            3333 699999999999987752   445433

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.80  E-value=1.5e-17  Score=165.51  Aligned_cols=156  Identities=23%  Similarity=0.257  Sum_probs=117.6

Q ss_pred             hhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccc
Q 013217           61 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI  140 (447)
Q Consensus        61 ~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~  140 (447)
                      ++....+|    +.++++.|.+.     .+.++||++|+.+++.++++|||+|++..+.|++......    ..+...| 
T Consensus        62 ~p~~~~le----~~lA~l~g~~~-----al~~~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~----~~~~~~G-  127 (427)
T PRK05994         62 NPTNAVLE----ERVAALEGGTA-----ALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFG----HAFKSFG-  127 (427)
T ss_pred             CccHHHHH----HHHHHHhCCCc-----EEEEcCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHH----HHHHhcC-
Confidence            34566676    57889999875     3456999999999999999999999999988876532110    0112233 


Q ss_pred             eeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCC
Q 013217          141 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD  218 (447)
Q Consensus       141 ~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~  218 (447)
                       ++++.++.      .|++++++++++ +|++|++.+++||+  ..|+++|.++|+++|+++++|++|+.+..     ..
T Consensus       128 -~~v~~vd~------~d~~~l~~ai~~-~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~~-----~~  194 (427)
T PRK05994        128 -WQVRWADA------DDPASFERAITP-RTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYL-----IR  194 (427)
T ss_pred             -cEEEEECC------CCHHHHHHhcCc-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCcccccc-----CC
Confidence             34444332      388999999987 89999998777775  78999999999999999999999876643     23


Q ss_pred             CCC-cccEEEeCCCcccCCCCC---ceEE
Q 013217          219 PFK-YCDVVTTTTHKSLRGPRG---GMIF  243 (447)
Q Consensus       219 ~~~-~~Di~~~s~~K~l~Gp~g---G~i~  243 (447)
                      |+. ++|+++.|+||+++|+.+   |+++
T Consensus       195 pl~~gaDivv~S~tK~lgg~~~~~gG~v~  223 (427)
T PRK05994        195 PIEHGADIVVHSLTKFLGGHGNSMGGIIV  223 (427)
T ss_pred             ccccCCcEEEEcCccccCCCCCcEEEEEE
Confidence            444 699999999999987764   5554

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=99.80  E-value=2.9e-17  Score=159.40  Aligned_cols=265  Identities=18%  Similarity=0.183  Sum_probs=172.1

Q ss_pred             HHHHHHHcCCCC-CccceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEeccc
Q 013217           72 QKRALAAFNLDE-NKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL  149 (447)
Q Consensus        72 ~~~~~~~~g~~~-~~~~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  149 (447)
                      ++.+++++|.+. +    +|.+++|+ +++..+ ..+++||| |++.+|.|+.+..        .+...|.  ++++++.
T Consensus        59 ~~~ia~~~~~~~~~----~I~i~~Gs~e~i~~l-~~~~~~g~-v~v~~P~y~~y~~--------~~~~~g~--~~~~v~~  122 (339)
T PRK06959         59 AACAARYYGAPDAA----HVLPVAGSQAAIRAL-PALLPRGR-VGIAPLAYSEYAP--------AFARHGH--RVVPLDE  122 (339)
T ss_pred             HHHHHHHhCCCCcc----cEEECcCHHHHHHHH-HHhcCCCe-EEEcCCCcHHHHH--------HHHHCCC--EEEeecc
Confidence            367889999974 4    45569998 676644 45678887 7788887765431        2334454  5555544


Q ss_pred             CCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHH---HHHhCCEEEEehhhhccccccccCCCCCCc-c
Q 013217          150 DESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQI---ADAVGALLMMDMAHISGLVAASVVADPFKY-C  223 (447)
Q Consensus       150 ~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~i---a~~~g~~livD~a~~~g~~~~~~~~~~~~~-~  223 (447)
                      +.       +.    +.+ ++++++++.||||+  ..+.+++.++   |++++.++|+|+++. .+....-.....+. -
T Consensus       123 ~~-------~~----~~~-~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~-~~~~~~s~~~~~~~~~  189 (339)
T PRK06959        123 AA-------DT----LPA-ALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFA-DTLPAASLAAHTDRPG  189 (339)
T ss_pred             cc-------hh----ccc-cCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCc-cCCCcccchhccCCCC
Confidence            31       22    222 46788888888886  6666655554   567899999999964 33321100000011 1


Q ss_pred             cEEEeCCCccc--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhH-HHHHHHHHHH
Q 013217          224 DVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF-KVYQNKVVSN  300 (447)
Q Consensus       224 Di~~~s~~K~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~-~~~~~~~~~~  300 (447)
                      -+++.|++|.+  +|.|.||+++++      ++.+.+.+...+...   +.....+...+++   ...+ ++..+++.++
T Consensus       190 vi~l~SfSK~~gl~GlRiGy~v~~~------~li~~l~~~~~~~~v---s~~~q~a~~~~L~---~~~~~~~~~~~~~~~  257 (339)
T PRK06959        190 LVVLRSVGKFFGLAGVRAGFVLAAP------ALLAALRDALGAWTV---SGPARHAVRAAFA---DAAWQAAMRERLAAD  257 (339)
T ss_pred             EEEEecChhhcCCcchheEEEecCH------HHHHHHHHhcCCCCC---cHHHHHHHHHHhC---cHHHHHHHHHHHHHH
Confidence            27889999986  688889999987      788887765433221   2223333333443   2333 5667888888


Q ss_pred             HHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCC
Q 013217          301 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFS  380 (447)
Q Consensus       301 ~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~  380 (447)
                      ++.+.+.|.+.|+++..   ...++|+++.    +..++.+.|.++||.++..   +     ..+++||+..  .+    
T Consensus       258 r~~l~~~L~~~g~~~~~---~~~f~~~~~~----~~~~l~~~l~~~GI~vr~~---~-----~~~~lRisi~--~~----  316 (339)
T PRK06959        258 GARLAALLRAHGFAVHA---TPLFSWTDDP----RAAALHAALARRGIWTRYF---A-----PPPSVRFGLP--AD----  316 (339)
T ss_pred             HHHHHHHHHHCCCCccC---cceEEEEeCC----CHHHHHHHHHhCCeEEEEC---C-----CCCeEEEECC--CC----
Confidence            99999999998887652   2455677753    4567888999999999632   1     1348999852  23    


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 013217          381 EKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       381 ~~di~~l~~~i~~~l~~~  398 (447)
                      .+|++++.++|++++...
T Consensus       317 ~~e~~~l~~al~~~~~~~  334 (339)
T PRK06959        317 EAEWQRLEDALAECVPTL  334 (339)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            789999999998877654

>PRK08354 putative aminotransferase; Provisional

Probab=99.80  E-value=6.1e-17  Score=155.44  Aligned_cols=291  Identities=15%  Similarity=0.097  Sum_probs=172.3

Q ss_pred             cCeeEecCCCCC-CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-HH
Q 013217           21 KSLELIASENFT-SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PA   98 (447)
Q Consensus        21 ~~i~l~~~~n~~-~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a   98 (447)
                      ..|+|..++|+. |+.+.+++...+..  ..+||..         ..+    ++++++.+|.       +|.+|+|+ ++
T Consensus         9 ~~i~l~~~~np~~p~~~~~a~~~~~~~--~~~yp~~---------~~l----~~~ia~~~~~-------~I~vt~G~~~a   66 (311)
T PRK08354          9 GLIDFSASVNPYPPEWLDEMFERAKEI--SGRYTYY---------EWL----EEEFSKLFGE-------PIVITAGITEA   66 (311)
T ss_pred             ceeEecCCCCCCCCHHHHHHHHHHHHH--hhcCCCh---------HHH----HHHHHHHHCC-------CEEECCCHHHH
Confidence            457888888865 67778888665432  2244421         223    3577788873       34458887 77


Q ss_pred             HHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCC
Q 013217           99 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS  178 (447)
Q Consensus        99 ~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~  178 (447)
                      +..++. ++.+||+|++.+|.|+++..        .+...|.  +++.+       .+|++.+++.++  ++++++++.|
T Consensus        67 l~~~~~-~~~~gd~vlv~~P~y~~~~~--------~~~~~g~--~~~~~-------~~d~~~l~~~~~--~~~~vi~~~P  126 (311)
T PRK08354         67 LYLIGI-LALRDRKVIIPRHTYGEYER--------VARFFAA--RIIKG-------PNDPEKLEELVE--RNSVVFFCNP  126 (311)
T ss_pred             HHHHHH-hhCCCCeEEEeCCCcHHHHH--------HHHHcCC--EEeec-------CCCHHHHHHhhc--CCCEEEEecC
Confidence            776654 44599999999998877632        2334443  44332       368899988775  5678888878


Q ss_pred             CCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCccc--CCCCCceEEeecCCcch
Q 013217          179 AYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSL--RGPRGGMIFFKKDPVLG  251 (447)
Q Consensus       179 ~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l--~Gp~gG~i~~~~~~~~~  251 (447)
                      +||+  ..+   +++|.++|+++|+++|+|+++ .++...+....  ..-.+++.|++|++  +|.|.|++++..     
T Consensus       127 ~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y-~~f~~~~~~~~--~~~vi~~~S~SK~~~l~GlRiG~~v~~~-----  198 (311)
T PRK08354        127 NNPDGKFYNFKELKPLLDAVEDRNALLILDEAF-IDFVKKPESPE--GENIIKLRTFTKSYGLPGIRVGYVKGFE-----  198 (311)
T ss_pred             CCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcc-hhccccccccC--CCcEEEEeccHhhcCCccceeeeeeehH-----
Confidence            8886  444   567778889999999999995 45443321111  12357889999986  688889998733     


Q ss_pred             hhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCCCCeeEEecCC
Q 013217          252 VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLVLVDLR  330 (447)
Q Consensus       252 ~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~v~~~  330 (447)
                       +....+   ..+...   +....+++...++    .+++    ++.++.+.+.+..+.. +.-.. . ++..++++++.
T Consensus       199 -~~l~~~---~~~~~~---~~~~~~~~~~~~~----~~~~----~~~~~~~~~~~~~~~l~~~l~~-~-~~~~~~~~~~~  261 (311)
T PRK08354        199 -EAFRSV---RMPWSI---GSTGYAFLEFLIE----DDFE----HLRKTMPLIWREKERFEKALYV-K-SDANFFIKDVG  261 (311)
T ss_pred             -HHHHHc---CCCccC---CHHHHHHHHHHHH----hHHH----HHHHHHHHHHHHHHHHHHhcCC-C-CCCcEEEEECC
Confidence             322222   222111   2222222221221    1221    1222222222222210 11111 2 22334456543


Q ss_pred             CCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          331 PMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       331 ~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                          +..++.+.|.++||.+..+..++     .++++||++..       .++.+++.+++++.
T Consensus       262 ----~~~~~~~~l~~~gv~v~~g~~f~-----~~~~iRi~~~~-------~~~~~~l~~al~~~  309 (311)
T PRK08354        262 ----DAEKFVEFLKRNGILVRDCTSFG-----LPGYIRFSVRD-------REENEKLIRALREW  309 (311)
T ss_pred             ----CHHHHHHHHHHCCeEEEecccCC-----CCCeEEEEeCC-------HHHHHHHHHHHHHh
Confidence                45678888889999996543221     24689998653       67788888888764

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.79  E-value=9.3e-17  Score=159.39  Aligned_cols=307  Identities=13%  Similarity=0.095  Sum_probs=186.1

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc----
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  107 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~----  107 (447)
                      -.|.|.+++...+.. +....   +.. ..+...+++    ++++++++.+.     .+.++||++|+.+++....    
T Consensus        57 ~~p~v~~ai~~~~~~-~~~~~---~~~-~~~~~~~l~----~~l~~~~~~~~-----~~~~~SGseA~e~Alk~a~~~~~  122 (396)
T PRK04073         57 RHPKIIQALKDQADK-VTLTS---RAF-HSDQLGPWY----EKVAKLTGKDM-----VLPMNTGAEAVETAIKAARRWAY  122 (396)
T ss_pred             CCHHHHHHHHHHHhh-ccccc---ccc-CCHHHHHHH----HHHHhcCCCCe-----EEEcCChHHHHHHHHHHHHHHhh
Confidence            368999988877654 22111   111 112223333    56777776543     2446899999998887652    


Q ss_pred             -----CCC-CEEEEecCCCCcccCCCccccccccccccce-----eE-----EEecccCCCCCCCCHHHHHHHhhhhCCc
Q 013217          108 -----KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----FE-----SMPYRLDESTGLVDYDMLEKTAILFRPK  171 (447)
Q Consensus       108 -----~pg-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~-----~~-----~~~~~~~~~~~~id~~~l~~~~~~~~~k  171 (447)
                           ++| ++|+..+-.+.|... +      .+.+++..     +.     +..++      ..|++++++++++ +++
T Consensus       123 ~~~g~~~~r~~ii~~~~~~HG~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~i~~-~~~  188 (396)
T PRK04073        123 DVKGVEPNKAEIIACEGNFHGRTM-A------AVSLSSEEEYKRGFGPMLPGIKKIP------YGDLEALKAAITP-NTA  188 (396)
T ss_pred             hccCCCCCCCEEEEECCCcCCCCH-H------HHhhcCCcccccCCCCCCCCceEeC------CCCHHHHHHhccc-CeE
Confidence                 144 678887654433210 0      11111110     00     01111      1278999998876 889


Q ss_pred             EEEEcCCCCCC--CCC----hHHHHHHHHHhCCEEEEehhhhcccccccc-CCC-CCC-cccEEEeCCCcccCC--CCCc
Q 013217          172 LIIAGASAYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASV-VAD-PFK-YCDVVTTTTHKSLRG--PRGG  240 (447)
Q Consensus       172 lii~~~~~~~~--~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~~-~~~-~~Di~~~s~~K~l~G--p~gG  240 (447)
                      +|+++++++++  ..+    +++|.++|+++|+++++|++|. |+...+. ... ... ..|++++  +|.+++  .+.|
T Consensus       189 ~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~-g~g~~g~~~~~~~~~~~pdi~~~--sK~lg~gg~~ig  265 (396)
T PRK04073        189 AFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQT-GLGRTGKLFACDWDNVTPDMYIL--GKALGGGVFPIS  265 (396)
T ss_pred             EEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchh-CCCcCcHHHHhhhcCCCCCEEEe--cccccCCCCcce
Confidence            99998765553  333    7899999999999999999985 4432221 110 011 2577765  598854  5679


Q ss_pred             eEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeC-C
Q 013217          241 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSG-G  319 (447)
Q Consensus       241 ~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~  319 (447)
                      ++++++      ++.+.+.........++ +....++..++++.+.+++   +.++..++.++|.+.|++.+...+.. .
T Consensus       266 ~~~~~~------~i~~~~~~~~~~~t~~~-~~~~~aaa~aaL~~~~~~~---l~~~~~~~~~~l~~~L~~l~~~~i~~~~  335 (396)
T PRK04073        266 CVAANR------DILGVFTPGSHGSTFGG-NPLACAVSIAALEVLEEEK---LPERSLELGEYFKEQLKEIDNPMIKEVR  335 (396)
T ss_pred             EEEEcH------HHHhhhcCCCCCCCCCC-CHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHhhcCCccccee
Confidence            999887      67776654322222333 4444454455777654433   34566677888888888754322211 0


Q ss_pred             CCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          320 SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       320 ~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      ....++.+++..   +..++.+.|.++||.+...         ..+.||++++...+    ++|++++++.|++++
T Consensus       336 ~~g~~~~~~~~~---~~~~~~~~l~~~Gv~~~~~---------~~~~iRi~p~l~~t----~e~i~~~~~~l~~~l  395 (396)
T PRK04073        336 GRGLFIGVELNE---PARPYCEALKEEGLLCKET---------HETVIRFAPPLVIT----KEELDWAFEKIKAVL  395 (396)
T ss_pred             cceEEEEEEecc---hHHHHHHHHHHCCeEEecC---------CCCEEEEECCcccC----HHHHHHHHHHHHHHh
Confidence            123344555532   4567888888899998531         13589999988877    999999999998765

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=8.9e-18  Score=157.84  Aligned_cols=324  Identities=19%  Similarity=0.181  Sum_probs=211.5

Q ss_pred             ecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCc-hhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHH
Q 013217           26 IASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYT  104 (447)
Q Consensus        26 ~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g-~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~  104 (447)
                      -.+..++.+.+.+++..     |.-...+.|..-| .....++|    +..++++|.+.+     +....|...|.+.+.
T Consensus       150 a~~~g~ca~~~~~~~~k-----ygl~~css~~e~G~~~~hkelE----~l~A~f~g~e~a-----~vF~mGf~TNs~~~p  215 (519)
T KOG1357|consen  150 AQSVGPCAEASLKSFDK-----YGLSRCSSRHEAGTTEEHKELE----ELVARFLGVEDA-----IVFSMGFATNSMNIP  215 (519)
T ss_pred             cccCCcCChHHHHHHHH-----hcccccccchhcccHHHHHHHH----HHHHHhcCCcce-----EEEeccccccccCcc
Confidence            34444556788887754     3333444444333 34455666    678899999873     335888888888999


Q ss_pred             HhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhh---------hCC--cEE
Q 013217          105 AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---------FRP--KLI  173 (447)
Q Consensus       105 al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~---------~~~--kli  173 (447)
                      +++.||.-|+...+.|.+...        .++++|+..++..  .+      |+++||+++++         ++|  |++
T Consensus       216 ~l~~~gsLIiSDelNHaSi~~--------GaRLSgAtiRVfk--HN------dm~~LEr~Lrd~I~~gqP~Thrp~kki~  279 (519)
T KOG1357|consen  216 SLLGKGSLIISDELNHASLIT--------GARLSGATTRVFR--HN------DMQGLERLLRDAIVYGQPKTHRPWKKIL  279 (519)
T ss_pred             eeecCCcceeeccccchheec--------cccccCceEEEEe--cC------CHHHHHHHHHHHHhcCCCCcCCcchhee
Confidence            999999999999999887653        3467777444433  32      45555555543         233  455


Q ss_pred             EEcC---CCCCCCCChHHHHHHHHHhCCEEEEehhhhcccccc-c--cCC-CCC--CcccEEEeCCCcccCCCCCceEEe
Q 013217          174 IAGA---SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA-S--VVA-DPF--KYCDVVTTTTHKSLRGPRGGMIFF  244 (447)
Q Consensus       174 i~~~---~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~-~--~~~-~~~--~~~Di~~~s~~K~l~Gp~gG~i~~  244 (447)
                      ++..   |.-..+.++.++.++++++.++++.|+||+.|.+.. |  +.. ...  ..+|++.+++.|++ |--||++.+
T Consensus       280 iivegiysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSf-ga~GGyiag  358 (519)
T KOG1357|consen  280 ICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSF-GAAGGYIAG  358 (519)
T ss_pred             eeeccceeccCeecccHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhc-ccccceecC
Confidence            5553   333347899999999999999999999999998743 2  111 111  15889999999986 556899999


Q ss_pred             ecCCcchhhHHHHhhhccCCCCCCCCcH-HHHHHHHHHHHHhcC----hhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCC
Q 013217          245 KKDPVLGVELESAINNAVFPGLQGGPHN-HTIGGLAVCLKHAQS----PEFKVYQNKVVSNCRALASRLVELGYKLVSGG  319 (447)
Q Consensus       245 ~~~~~~~~~~~~~i~~~~~~~~~g~p~~-~~~aal~~al~~~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~  319 (447)
                      ++      ++.+.+.........++... +...-...+++.+..    ...++..+++.+|+++++..|+..|+-+.+. 
T Consensus       359 sk------~lid~lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~gfivyG~-  431 (519)
T KOG1357|consen  359 SK------ELIDYLRTPSPSALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKMGFIVYGN-  431 (519)
T ss_pred             cH------HHHhhhccCCCceeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcCcEEEecC-
Confidence            98      67776654322222233222 222223345555542    2347888999999999999999999877654 


Q ss_pred             CCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          320 SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       320 ~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                      .++..+.+-+.....- ..+.+.|.+.+|.+-....|.  .|...++.|++.++.++    .|+++++.+.+.++
T Consensus       432 ~dSpVvplll~~~~k~-~~f~r~~l~~nigvVvvgfPa--tpl~e~r~R~c~Sa~ht----~e~ld~~l~~i~~~  499 (519)
T KOG1357|consen  432 NDSPVVPLLLYGPAKI-VAFSREMLERNIGVVVVGFPA--TPLLESRARFCLSASHT----KEDLDRALEVIDRV  499 (519)
T ss_pred             CCCCcceeeecCcccc-cHHHHHHHhcCceEEEEeCCC--chHHHhHHHhhhccccc----HHHHHHHHHHHhhh
Confidence            4565443333222222 356666666666553322332  34556789999888888    89999888877664

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=99.79  E-value=8.3e-17  Score=154.87  Aligned_cols=335  Identities=16%  Similarity=0.175  Sum_probs=213.1

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcC-CC
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK-PH  110 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~-pg  110 (447)
                      +|++.+++|..           |...|++.+.+..+|    +.++++||.+.     .+.+++|..++..++..+++ ||
T Consensus        55 pS~~m~aAM~~-----------GDD~Y~gdpSv~~Le----e~vael~G~E~-----alpthqGRgaE~Il~~~~~~~~g  114 (467)
T TIGR02617        55 VTQSMQAAMMR-----------GDEAYSGSRSYYALA----ESVKNIFGYQY-----TIPTHQGRGAEQIYIPVLIKKRE  114 (467)
T ss_pred             CCHHHHHHHHc-----------CCcccccCchHHHHH----HHHHHHhCCce-----EEECCCCchHHHHHHHhhccccc
Confidence            57888888763           223356777778888    57888999986     35568999999999999988 79


Q ss_pred             CEEEEecC----CCCcccCCCccccccccccccceeEEEecc------cC-CCCCCCCHHHHHHHhhhh---CCcEEEEc
Q 013217          111 DRIMGLDL----PHGGHLSHGFMTPKRRVSGTSIYFESMPYR------LD-ESTGLVDYDMLEKTAILF---RPKLIIAG  176 (447)
Q Consensus       111 d~Vl~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------~~-~~~~~id~~~l~~~~~~~---~~klii~~  176 (447)
                      |++.+...    .|..|+..+    ...+.+.|.....++.+      ++ +..|.+|+++|+++++++   +.-.+...
T Consensus       115 ~e~g~~~~~~~v~hn~~fett----~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~t  190 (467)
T TIGR02617       115 QEKGLDRSKMVAFSNYFFDTT----QGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVAT  190 (467)
T ss_pred             ccccccccccccceEEEEecc----hHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeeee
Confidence            98885443    333333211    01233445422221111      11 235789999999999863   22233332


Q ss_pred             CCCC--CC-CC---ChHHHHHHHHHhCCEEEEehhhhcc-c--------cccccCCCC-----CCcccEEEeCCCcccCC
Q 013217          177 ASAY--PR-DF---DYPRMRQIADAVGALLMMDMAHISG-L--------VAASVVADP-----FKYCDVVTTTTHKSLRG  236 (447)
Q Consensus       177 ~~~~--~~-~~---~~~~i~~ia~~~g~~livD~a~~~g-~--------~~~~~~~~~-----~~~~Di~~~s~~K~l~G  236 (447)
                      -++|  ++ ++   ++.+++++|++||+.++.|+|..+- .        .+.+.....     +.++|.++.|++|.+..
T Consensus       191 lt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgA  270 (467)
T TIGR02617       191 ITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMV  270 (467)
T ss_pred             EEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCC
Confidence            1222  22 44   4578888999999999999986542 2        122221111     24689999999999999


Q ss_pred             CCCceEEeecCCcchhhHHHHhhhcc--CCC--CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCC
Q 013217          237 PRGGMIFFKKDPVLGVELESAINNAV--FPG--LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG  312 (447)
Q Consensus       237 p~gG~i~~~~~~~~~~~~~~~i~~~~--~~~--~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  312 (447)
                      |-||+++++++.  +.++.++++...  +.|  ++|+...-.+.|++..|.+...+   +|......+.++|.+.|.+.|
T Consensus       271 pvGg~Lag~d~~--~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~~---~yl~~ri~qv~yl~~~L~~~G  345 (467)
T TIGR02617       271 PMGGLLCFKDDS--FFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNL---DWLAYRINQVQYLVNGLEEIG  345 (467)
T ss_pred             cccceEEecchh--HHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcccH---HHHHHHHHHHHHHHHHHHhCC
Confidence            999999999850  001223333211  112  25777777888999889887654   457777788899999999999


Q ss_pred             cEeeeCCCCCeeEEecCCC-------CCCCHHHHHHHH-hhcCeEE-ccCCC-----CCCCCCCC--CCeEEEecCcccc
Q 013217          313 YKLVSGGSDNHLVLVDLRP-------MGIDGARVEKIL-DMASITL-NKNSV-----PGDKSALV--PGGIRIGSPAMTT  376 (447)
Q Consensus       313 ~~~~~~~~~~~~~~v~~~~-------~~~~~~~~~~~L-~~~gI~v-~~~~~-----p~~~~~~~--~~~iRig~~~~~~  376 (447)
                      +.++.  +..|-+++|...       ....++.+.-.| .+.||-. ..+++     |.......  -.-+|+..|.   
T Consensus       346 vpi~~--~Gghav~iDa~~~lphip~~~fpa~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~~~~~~~el~RlaipR---  420 (467)
T TIGR02617       346 VVCQQ--AGGHAAFVDAGKLLPHIPADQFPAHALACELYKVAGIRAVEIGSLLLGRDPKTGKQLPCPAELLRLTIPR---  420 (467)
T ss_pred             CcEEe--cCccEEEEehhhhCCCCChhhCcHHHHHHHHHHHcCcceEeecceecccCCCCCccCCCccceeeecccc---
Confidence            99876  457877777432       122344454444 5677753 22222     21111111  1358987663   


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH
Q 013217          377 RGFSEKEFVAIADFIHEGVEITLE  400 (447)
Q Consensus       377 ~g~~~~di~~l~~~i~~~l~~~~~  400 (447)
                      |-.+.+.|+++++.+..+.++...
T Consensus       421 rvyt~~h~d~v~~~~~~~~~~~~~  444 (467)
T TIGR02617       421 ATYTQTHMDFIIEAFKHVKENAPN  444 (467)
T ss_pred             ccccHhHHHHHHHHHHHHHhhhhh
Confidence            445689999999999998887643

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.79  E-value=3.5e-17  Score=157.36  Aligned_cols=226  Identities=22%  Similarity=0.219  Sum_probs=155.8

Q ss_pred             CCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccc
Q 013217           51 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT  130 (447)
Q Consensus        51 g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~  130 (447)
                      +|...|  .+++..+.+|    +.++.+-|.+.     .+.+.||..|+..++.+++++||+|+..+..|++.+...   
T Consensus        54 ~~~Y~R--~~nPT~~~lE----~~~a~LEg~~~-----~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~---  119 (396)
T COG0626          54 GYDYSR--TGNPTRDALE----EALAELEGGED-----AFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLF---  119 (396)
T ss_pred             Cccccc--CCCccHHHHH----HHHHHhhCCCc-----EEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHH---
Confidence            444443  4578888998    57778878775     344699999999999999999999999988888764211   


Q ss_pred             cccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhc
Q 013217          131 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHIS  208 (447)
Q Consensus       131 ~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~  208 (447)
                       .......|  +++..  +|    .-|.+++++++.+.+||+|++.+|.||.  ..|+++|+++|+++|+.+++|.+.+.
T Consensus       120 -~~~l~~~g--i~~~~--~d----~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfat  190 (396)
T COG0626         120 -EKILQKFG--VEVTF--VD----PGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFAT  190 (396)
T ss_pred             -HHHHHhcC--eEEEE--EC----CCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCccc
Confidence             01111122  34433  22    1345566666664489999999888897  78999999999999999999998654


Q ss_pred             cccccccCCCCCC-cccEEEeCCCcccCCCCC---ceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHH
Q 013217          209 GLVAASVVADPFK-YCDVVTTTTHKSLRGPRG---GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH  284 (447)
Q Consensus       209 g~~~~~~~~~~~~-~~Di~~~s~~K~l~Gp~g---G~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~  284 (447)
                      +     +...|++ ++||++.|..|.+.|..-   |+++++++     ++.+.+....... .|+...+. -| +..++-
T Consensus       191 P-----~~q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~-----~~~~~~~~~~~~~-~G~~l~p~-dA-~l~lRG  257 (396)
T COG0626         191 P-----VLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNE-----ELYELLFFAQRAN-TGAVLSPF-DA-WLLLRG  257 (396)
T ss_pred             c-----cccChhhcCCCEEEEeccccccCCcceeeeEEecChH-----HHHHHHHHHHHhh-cCCCCCHH-HH-HHHHhc
Confidence            4     3345666 699999999999988643   76776664     5666552222211 12211111 11 445555


Q ss_pred             hcChhHHHHHHHHHHHHHHHHHHHHH-CCcE
Q 013217          285 AQSPEFKVYQNKVVSNCRALASRLVE-LGYK  314 (447)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~  314 (447)
                      +.+  +.-+++++.+|+..+++.|++ +.++
T Consensus       258 lkT--L~~Rm~~~~~nA~~IA~~L~~~p~V~  286 (396)
T COG0626         258 LRT--LALRMERHNENALKIAEFLADHPKVK  286 (396)
T ss_pred             cch--HHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence            543  567899999999999999998 3443

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.79  E-value=9.8e-17  Score=160.46  Aligned_cols=327  Identities=17%  Similarity=0.115  Sum_probs=191.7

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh--cCC
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP  109 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al--~~p  109 (447)
                      .+|.|.+++.+.+...  ..++..  ++..+    ......+.++++++.+.+.   .+.++||++|+..++..+  ..+
T Consensus        53 ~~p~v~~a~~~~~~~~--~~~~~~--~~~~~----~~~~l~~~l~~~~~~~~~~---v~~~~sgsea~~~al~~~~~~~~  121 (413)
T cd00610          53 NHPEVVEALKEQLAKL--THFSLG--FFYNE----PAVELAELLLALTPEGLDK---VFFVNSGTEAVEAALKLARAYTG  121 (413)
T ss_pred             CCHHHHHHHHHHHHhC--cCccCc--ccCCH----HHHHHHHHHHHhCCCCCCE---EEEcCcHHHHHHHHHHHHHHHcC
Confidence            4799999988877431  111111  01122    2233446888999865443   244688889999998876  367


Q ss_pred             CCEEEEecCCCCcccCCCccccccc-c--ccccceeEEEecccCC-----CCCCCCHHHHHHHhhhh--CCcEEEEcCCC
Q 013217          110 HDRIMGLDLPHGGHLSHGFMTPKRR-V--SGTSIYFESMPYRLDE-----STGLVDYDMLEKTAILF--RPKLIIAGASA  179 (447)
Q Consensus       110 gd~Vl~~~~~~~~~~~~~~~~~~~~-~--~~~g~~~~~~~~~~~~-----~~~~id~~~l~~~~~~~--~~klii~~~~~  179 (447)
                      +|+|++.++.|.|............ .  ........++.++.++     ..+..|+++|++.++++  ++++|++.+.+
T Consensus       122 ~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~  201 (413)
T cd00610         122 RKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEPIQ  201 (413)
T ss_pred             CCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEEEEcccc
Confidence            9999999887655421110000000 0  0000001223333321     11345899999988762  56777776544


Q ss_pred             CC-C-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccCC-CCCceEEeecCCc
Q 013217          180 YP-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRG-PRGGMIFFKKDPV  249 (447)
Q Consensus       180 ~~-~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~G-p~gG~i~~~~~~~  249 (447)
                      ++ + ..+    +++|.++|+++|+++++|++|. |+...+.. . ...+ ..|++++  +|++++ .+.|+++.++   
T Consensus       202 ~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~-g~g~~g~~~~~~~~~~~~d~~t~--sK~l~~g~~~g~~~~~~---  275 (413)
T cd00610         202 GEGGVIVPPPGYLKALRELCRKHGILLIADEVQT-GFGRTGKMFAFEHFGVEPDIVTL--GKGLGGGLPLGAVLGRE---  275 (413)
T ss_pred             CCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCcchhhHhhcCCCCCeEEE--cccccCccccEEEEEcH---
Confidence            43 3 455    8999999999999999999984 43222110 0 0011 2466644  599864 5568888877   


Q ss_pred             chhhHHHHh--hhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCc--EeeeC-CCCCee
Q 013217          250 LGVELESAI--NNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGY--KLVSG-GSDNHL  324 (447)
Q Consensus       250 ~~~~~~~~i--~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~--~~~~~-~~~~~~  324 (447)
                         ++.+.+  ......+.. +.+...+++..++++.+...   ++.+++.++.+++.+.|++...  .++.. .....+
T Consensus       276 ---~~~~~~~~~~~~~~~t~-~~~~~~~~a~~a~l~~l~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~  348 (413)
T cd00610         276 ---EIMDAFPAGPGLHGGTF-GGNPLACAAALAVLEVLEEE---GLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLM  348 (413)
T ss_pred             ---HHHHhhccCCCCCCCCC-CcCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhhCCcEEEeecCceE
Confidence               677765  222121222 23344455555677766542   3467777888888888876321  22211 112345


Q ss_pred             EEecCCCCC-------CCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          325 VLVDLRPMG-------IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       325 ~~v~~~~~~-------~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      +++.+....       .....+.+.|.++||.+...    .     +..+|++++..++    ++|++++++.|.+++
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~----~-----~~~lR~~~~~~~t----~~~i~~~~~~l~~~l  413 (413)
T cd00610         349 IGIELVKDRATKPPDKELAAKIIKAALERGLLLRPS----G-----GNVIRLLPPLIIT----EEEIDEGLDALDEAL  413 (413)
T ss_pred             EEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEeec----C-----CCEEEEECCCcCC----HHHHHHHHHHHHHhC
Confidence            555554321       24566888888999999542    1     3579999887777    999999999987653

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.79  E-value=1.9e-16  Score=156.93  Aligned_cols=312  Identities=15%  Similarity=0.111  Sum_probs=186.0

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh----c
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI----L  107 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al----~  107 (447)
                      -.|.|.+++.+.+.+.+..+   ..+  ..+...+++    ++++++++.+.     .+.++||++|+..++.++    .
T Consensus        48 ~~p~v~~a~~~~~~~~~~~~---~~~--~~~~~~~la----~~l~~~~~~~~-----v~~~~sGseA~~~al~~ar~~~~  113 (389)
T PRK01278         48 AHPHLVEALKEQAEKLWHVS---NLY--RIPEQERLA----ERLVENSFADK-----VFFTNSGAEAVECAIKTARRYHY  113 (389)
T ss_pred             CCHHHHHHHHHHHHhcCccc---ccc--CChHHHHHH----HHHHhhCCCCE-----EEEcCCcHHHHHHHHHHHHHHHH
Confidence            47999999888776422111   111  122222333    56777765442     244689999999988766    4


Q ss_pred             CCCC----EEEEecCCCCcccCCCccccccccccccceeEEEec-ccCCCCC----CCCHHHHHHHhhhhCCcEEEEcCC
Q 013217          108 KPHD----RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY-RLDESTG----LVDYDMLEKTAILFRPKLIIAGAS  178 (447)
Q Consensus       108 ~pgd----~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~----~id~~~l~~~~~~~~~klii~~~~  178 (447)
                      ++||    +|++.++.|.|.....       ....+.......+ +.. .+.    ..|++++++++++ ++++|++.+.
T Consensus       114 ~~G~~~r~~vi~~~~~yhg~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~l~~~l~~-~~~avivep~  184 (389)
T PRK01278        114 GKGHPERYRIITFEGAFHGRTLAT-------IAAGGQEKYLEGFGPLV-PGFDQVPFGDIEALKAAITP-NTAAILIEPI  184 (389)
T ss_pred             hcCCCCCCEEEEECCCcCCCcHHH-------HhccCChhhcccCCCCC-CCceEeCCCCHHHHHHhhCC-CeEEEEEecc
Confidence            6777    8999888765542111       1111110000000 011 111    2689999999976 8999999865


Q ss_pred             CCCC--C----CChHHHHHHHHHhCCEEEEehhhhcccccccc-CCC-CCC-cccEEEeCCCcccC-CCCCceEEeecCC
Q 013217          179 AYPR--D----FDYPRMRQIADAVGALLMMDMAHISGLVAASV-VAD-PFK-YCDVVTTTTHKSLR-GPRGGMIFFKKDP  248 (447)
Q Consensus       179 ~~~~--~----~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~~-~~~-~~Di~~~s~~K~l~-Gp~gG~i~~~~~~  248 (447)
                      ++++  .    ..+++|+++|++||+++|+|++|. |+...+. ... ... ..|++  +++|.++ |.+.|++++++  
T Consensus       185 ~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~G~~ig~~~~~~--  259 (389)
T PRK01278        185 QGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQC-GMGRTGKLFAHEWAGVTPDIM--AVAKGIGGGFPLGACLATE--  259 (389)
T ss_pred             cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCCcceeecccCCCCCEE--EEehhccCCcceEEEEEcH--
Confidence            5443  2    257999999999999999999974 5533331 110 011 24655  5569984 66789999887  


Q ss_pred             cchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC--CcE-eee--CCCCCe
Q 013217          249 VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYK-LVS--GGSDNH  323 (447)
Q Consensus       249 ~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~-~~~--~~~~~~  323 (447)
                          ++.+.+.......+.+ .+....++..++++.+.+++   +.+++.++.+.+.+.|++.  ... ++.  .+ ...
T Consensus       260 ----~~~~~~~~~~~~~t~~-~~~~~~aaa~a~l~~l~~~~---~~~~~~~~~~~l~~~l~~l~~~~~~~~~~v~g-~G~  330 (389)
T PRK01278        260 ----EAAKGMTPGTHGSTYG-GNPLAMAVGNAVLDVILAPG---FLDNVQRMGLYLKQKLEGLVDRFPDVIEEVRG-KGL  330 (389)
T ss_pred             ----HHHhccCCCCCCCCCC-ccHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHHhhCCCceeeEec-ccE
Confidence                6766665433222333 34444555555677664333   3445556666666666541  111 221  11 123


Q ss_pred             eEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          324 LVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       324 ~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      +.++.+..   +..++.+.|.+.||.+.    |+.     .+.+|++++...+    +++++++++.|++++.
T Consensus       331 ~~~i~~~~---~~~~~~~~l~~~GV~~~----p~~-----~~~lR~~p~~~~~----~~~i~~~l~~l~~~l~  387 (389)
T PRK01278        331 LLGLKCVV---PNRDLVQALRDEGLLTV----GAG-----DNVVRLLPPLIIT----EEEIDEALERLERAAE  387 (389)
T ss_pred             EEEEEEec---CHHHHHHHHHHCCeEEe----ecC-----CCEEEEeCCcccC----HHHHHHHHHHHHHHHH
Confidence            33444422   45678888878899984    331     3589999876666    9999999999988875

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.79  E-value=2.1e-16  Score=157.17  Aligned_cols=312  Identities=19%  Similarity=0.125  Sum_probs=191.5

Q ss_pred             CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC-CCccceeeecCCcHHHHHHHHHHhcCCC-
Q 013217           33 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVYTAILKPH-  110 (447)
Q Consensus        33 ~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~-~~~~~~~v~~~sGs~a~~~~~~al~~pg-  110 (447)
                      +|.+.+++.+.+.. +  +....+| .... ..++    .++++++++.+ ++.   .+.++||++|+..++.....+| 
T Consensus        61 ~p~v~~ai~~~~~~-~--~~~~~~~-~~~~-~~~l----a~~l~~~~~~~~~~~---v~~~~sgsea~~~al~~~~~~g~  128 (398)
T PRK03244         61 HPAVVEAVTRQLAT-L--GHVSNLF-ATEP-QIAL----AERLVELLGAPEGGR---VFFCNSGAEANEAAFKLARLTGR  128 (398)
T ss_pred             CHHHHHHHHHHHHh-c--cCccCcc-CCHH-HHHH----HHHHHHhCCCCCCCE---EEEeCchHHHHHHHHHHHHHHCC
Confidence            68999998887764 2  1112222 2111 1233    35788888854 232   2335778899999988766676 


Q ss_pred             CEEEEecCCCCcccCCCccccccccccccce----------eEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCC
Q 013217          111 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY----------FESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY  180 (447)
Q Consensus       111 d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~  180 (447)
                      ++|+..+..|.|....       .....+..          ..+..++      ..|++++++++.+ ++++|++.++.+
T Consensus       129 ~~ii~~~~~yhg~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~~~~-~~~aviiep~~~  194 (398)
T PRK03244        129 TKIVAAEGGFHGRTMG-------ALALTGQPAKRAPFEPLPGGVEHVP------YGDVDALAAAVDD-DTAAVFLEPIQG  194 (398)
T ss_pred             CeEEEECCCcCCccHH-------HHhccCCcccccCCCCCCCCceEeC------CCCHHHHHHhhcC-CeEEEEEecccC
Confidence            4677666555443110       01111110          0111111      1388999998865 789999986655


Q ss_pred             CC--CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-CCCC-C-cccEEEeCCCcccC-CCCCceEEeecCCcc
Q 013217          181 PR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-ADPF-K-YCDVVTTTTHKSLR-GPRGGMIFFKKDPVL  250 (447)
Q Consensus       181 ~~--~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~~~~-~-~~Di~~~s~~K~l~-Gp~gG~i~~~~~~~~  250 (447)
                      ++  ..+    +++|.++|++||+++|+|++|. |+...+.. .... . ..|++++  +|+|+ |.+.|+++.++    
T Consensus       195 ~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~gr~g~~~~~~~~~~~pDi~t~--sK~l~~G~~ig~~~~~~----  267 (398)
T PRK03244        195 EAGVVPPPAGYLAAAREITDRHGALLVLDEVQT-GIGRTGAWFAHQHDGVTPDVVTL--AKGLGGGLPIGACLAFG----  267 (398)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCcccchHHhhhhhCCCCCEEEE--chhhhCCcccEEEEEcH----
Confidence            53  444    8899999999999999999984 54322211 1011 1 2577755  59985 45668888887    


Q ss_pred             hhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCC-CCCeeEEecC
Q 013217          251 GVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGG-SDNHLVLVDL  329 (447)
Q Consensus       251 ~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~~~v~~  329 (447)
                        ++.+.+.........+. +....++...+++.+...   ++.+++.+..++|.+.|++.++..+... ....+.++.+
T Consensus       268 --~~~~~~~~~~~~~t~~~-~~~~~aaa~a~l~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~v~g~g~~~~i~~  341 (398)
T PRK03244        268 --PAADLLTPGLHGSTFGG-NPVACAAALAVLDTIASE---GLLENAERLGEQLRAGIEALGHPLVDHVRGRGLLLGIVL  341 (398)
T ss_pred             --HHHhhccCCCCcCCCCC-CHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhcCCCceeeEeeccEEEEEEE
Confidence              67776654322222332 344455555566655433   3466777778889999988654322210 1234556666


Q ss_pred             CCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          330 RPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       330 ~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      ...  ....+.+.|.++||.+...         ....||++++..++    ++|++++++.|++++...
T Consensus       342 ~~~--~~~~~~~~l~~~Gv~~~~~---------~~~~iR~~p~~~~t----~~~i~~~~~~l~~~l~~~  395 (398)
T PRK03244        342 TAP--VAKAVEAAAREAGFLVNAV---------APDVIRLAPPLIIT----DAQVDAFVAALPAILDAA  395 (398)
T ss_pred             ecc--HHHHHHHHHHHCCeEEeec---------CCCEEEEECCCcCC----HHHHHHHHHHHHHHHHhc
Confidence            421  3567888888999998542         13589999988777    999999999999988743

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.78  E-value=2.7e-17  Score=163.68  Aligned_cols=160  Identities=21%  Similarity=0.174  Sum_probs=118.2

Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217           60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  139 (447)
Q Consensus        60 g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g  139 (447)
                      +++...++|    +++++++|.+.     .+.++||+.|+..++.+++++||+|++.++.|++.+...    ...+...|
T Consensus        55 ~~p~~~~le----~~lA~l~g~~~-----~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~----~~~~~~~G  121 (418)
T TIGR01326        55 MNPTTDVLE----QRIAALEGGVA-----ALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLF----KHTLKRLG  121 (418)
T ss_pred             CChhHHHHH----HHHHHHhCCCe-----EEEEccHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHH----HHHHHHcC
Confidence            345566776    68899999764     355689999999999999999999999998887653211    01122334


Q ss_pred             ceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCC
Q 013217          140 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  217 (447)
Q Consensus       140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~  217 (447)
                      .  +++.++.      .|++++++++++ ++++|++..++||+  ..|+++|.++|+++|+++++|++++.+..     .
T Consensus       122 ~--~v~~v~~------~d~~~l~~~l~~-~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~~~-----~  187 (418)
T TIGR01326       122 I--EVRFVDP------DDPEEFEKAIDE-NTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPYL-----C  187 (418)
T ss_pred             c--EEEEECC------CCHHHHHHhcCc-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchhhc-----C
Confidence            3  4444332      289999999987 89999998888875  77999999999999999999999865532     2


Q ss_pred             CCCC-cccEEEeCCCcccCCC--CCceEEeec
Q 013217          218 DPFK-YCDVVTTTTHKSLRGP--RGGMIFFKK  246 (447)
Q Consensus       218 ~~~~-~~Di~~~s~~K~l~Gp--~gG~i~~~~  246 (447)
                      .|+. ++|++++|++|+++|+  +-|++++++
T Consensus       188 ~~l~~g~Divv~S~sK~l~g~G~~lGg~v~~~  219 (418)
T TIGR01326       188 RPIDHGADIVVHSATKYIGGHGTAIGGVIVDG  219 (418)
T ss_pred             CchhcCCeEEEECccccccCCccceEEEEEec
Confidence            3333 5899999999999654  336666643

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.78  E-value=1.1e-16  Score=170.44  Aligned_cols=275  Identities=15%  Similarity=0.112  Sum_probs=178.6

Q ss_pred             HHHHHHHHHcCCCCCccceeeecCCc-HHHHHHHHHHh-cCCC--CEEEEecCCCCcccCCCccccccccccccceeEEE
Q 013217           70 LCQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTAI-LKPH--DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESM  145 (447)
Q Consensus        70 ~~~~~~~~~~g~~~~~~~~~v~~~sG-s~a~~~~~~al-~~pg--d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  145 (447)
                      ..+..+++++|++.++    +..+.+ |.+..++++++ +.+|  |+|++.+.+|+++......    .....|  ++++
T Consensus       152 ~~Qt~ia~LtG~~~an----aSL~d~aTAaaea~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t----~a~~~G--ieV~  221 (993)
T PLN02414        152 NYQTMITDLTGLPMSN----ASLLDEGTAAAEAMAMCNNILKGKKKKFLIASNCHPQTIDVCQT----RADGLG--LEVV  221 (993)
T ss_pred             HHHHHHHHHhCCChhh----EeecCChHHHHHHHHHHHhcccCCCCEEEEcCccCHhHHHHHHH----hhhhcC--CEEE
Confidence            4568899999999753    333444 46666676666 5544  7899999899877543210    111233  3444


Q ss_pred             ecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC-CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-cc
Q 013217          146 PYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YC  223 (447)
Q Consensus       146 ~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-~~  223 (447)
                      .++++.    .|      ...+ .+-.+++..+++.+ ..|+++|+++||++|+++++ +++..++....   .|-. ++
T Consensus       222 ~v~~~~----~~------~~~~-~v~~vlvq~P~~~G~v~dv~~I~~~ah~~GaL~iV-aad~lal~~l~---~pge~GA  286 (993)
T PLN02414        222 VADEKD----FD------YSSG-DVCGVLVQYPATDGEVLDYAEFVKNAHANGVKVVM-ATDLLALTMLK---PPGEWGA  286 (993)
T ss_pred             Eecchh----hc------cccC-ceEEEEEecCCCCeEEcCHHHHHHHHHHcCCEEEE-EECHHHhcCCC---CHhhccC
Confidence            433321    11      1111 23344455555555 77999999999999999999 67666655321   1222 69


Q ss_pred             cEEEeCCCccc-----CCCCCceEEeecCCcchhhHHHHhhh-cc--------CCC--------------CCCCCcHHHH
Q 013217          224 DVVTTTTHKSL-----RGPRGGMIFFKKDPVLGVELESAINN-AV--------FPG--------------LQGGPHNHTI  275 (447)
Q Consensus       224 Di~~~s~~K~l-----~Gp~gG~i~~~~~~~~~~~~~~~i~~-~~--------~~~--------------~~g~p~~~~~  275 (447)
                      ||+++++|||+     +||+.|++++++      ++...+.. .+        .+.              ..+|.+....
T Consensus       287 Di~vgsgqKwg~P~G~GGP~aGflavr~------~~~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~  360 (993)
T PLN02414        287 DIVVGSAQRFGVPMGYGGPHAAFLATSQ------EYKRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTA  360 (993)
T ss_pred             cEEEECCCccccCCCCCCCCeeEEEECH------HHHhhCCCcccCcccCCCCCcccccccccccchhhhcccccchhHH
Confidence            99999999997     677779999998      34332210 00        000              1345555333


Q ss_pred             HHHHHHH-----HHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEE
Q 013217          276 GGLAVCL-----KHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITL  350 (447)
Q Consensus       276 aal~~al-----~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v  350 (447)
                      .++.+++     ..+...|.++..+++...+.++++.|.+.|+++..+ .....+.+.+.    +..++.+.|.++||.+
T Consensus       361 qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~G~~~~~~-~~f~~vt~~~~----~~~~v~~~L~~~gI~l  435 (993)
T PLN02414        361 QALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKKLGFQVQSL-PFFDTVKVKCS----DADAIADAAAKVGINL  435 (993)
T ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhcCCccCCC-CCcCeEEEecC----CHHHHHHHHHHCCCee
Confidence            3333332     233446788888999999999999998889888654 22233444432    4578999999999988


Q ss_pred             ccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217          351 NKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       351 ~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~  393 (447)
                      +...         .+.+|+|++.++|    ++||+++++++..
T Consensus       436 ~~~~---------~~~lrvs~~e~~T----~edId~L~~~l~~  465 (993)
T PLN02414        436 RVVD---------ANTVTVSFDETTT----LEDVDKLFKVFAG  465 (993)
T ss_pred             EEec---------CCeEEEEeeccCC----HHHHHHHHHHHcc
Confidence            6421         2469999999999    9999999999963

>PRK08637 hypothetical protein; Provisional

Probab=99.78  E-value=5.7e-17  Score=160.50  Aligned_cols=276  Identities=14%  Similarity=0.141  Sum_probs=164.2

Q ss_pred             eeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccc-ccccceeEEEecccCCCCCCCCHHHHHHHhh
Q 013217           89 NVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRV-SGTSIYFESMPYRLDESTGLVDYDMLEKTAI  166 (447)
Q Consensus        89 ~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~  166 (447)
                      +|.+|+|+ +++..++.++++|||+|++.+|.|+.+..        .+ ...|.  +++++++..+++.+|++++++.++
T Consensus        71 ~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~--------~~~~~~g~--~vv~v~~~~~~~~~d~~~l~~~~~  140 (388)
T PRK08637         71 LPIVTNALTHGLSLVADLFVDQGDTVLLPDHNWGNYKL--------TFNTRRGA--EIVTYPIFDEDGGFDTDALKEALQ  140 (388)
T ss_pred             eeeEccchHHHHHHHHHHhcCCCCEEEEcCCCCccHHH--------HHHHhcCC--EEEEecccCCCCcCCHHHHHHHHH
Confidence            34568887 88888889999999999999998776532        11 12343  566666632345689999998886


Q ss_pred             --hhCC-cEEEEcCCCCCC--CCC---hHHHHHHHHH-----hCCEEEEehhhhccccccccCCCC----C-C-ccc---
Q 013217          167 --LFRP-KLIIAGASAYPR--DFD---YPRMRQIADA-----VGALLMMDMAHISGLVAASVVADP----F-K-YCD---  224 (447)
Q Consensus       167 --~~~~-klii~~~~~~~~--~~~---~~~i~~ia~~-----~g~~livD~a~~~g~~~~~~~~~~----~-~-~~D---  224 (447)
                        ..++ ++++++.|+||+  ..+   +++|.++|++     +++++|+|+++ .++.+.+....+    + + .-.   
T Consensus       141 ~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y-~~l~~~~~~~~~~~~~~~~~~~~vi~  219 (388)
T PRK08637        141 AAYNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAY-FGLFYEDSYKESLFAALANLHSNILA  219 (388)
T ss_pred             hhccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccc-hhcccCCccchhhHHHhhcccccceE
Confidence              2234 456666788886  444   5677777765     89999999985 555443321111    0 1 112   


Q ss_pred             EEEeCCCccc--CCCCCceEEeecCCcchhhHHHHhhhc----cCCCCCCCCcHHHHHHHHHHHHHhcChhHHH----HH
Q 013217          225 VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNA----VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKV----YQ  294 (447)
Q Consensus       225 i~~~s~~K~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~----~~~~~~g~p~~~~~aal~~al~~~~~~~~~~----~~  294 (447)
                      +.+.|++|.+  +|.|.||+++........++.+.+...    ...... +.+....+++..++.   ...+.+    ..
T Consensus       220 i~~~s~SK~~~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~~q~a~~~~l~---~~~~~~~~~~~~  295 (388)
T PRK08637        220 VKLDGATKEEFVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLIRSNIS-NGPHPSQSAVLRALN---SPEFDKEKQEKF  295 (388)
T ss_pred             EEeccccccCCCcccceEEEEEccccCCcHHHHHHHHHHHHHHhhcccC-CCCcHHHHHHHHHhC---CHHHHHHHHHHH
Confidence            2345999964  688899998652000000455555431    111111 223333333333332   233322    23


Q ss_pred             HHHHHHHHHHHHHHHHC----CcEeeeCCCCCeeEEecCCCCCCCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEE
Q 013217          295 NKVVSNCRALASRLVEL----GYKLVSGGSDNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRI  369 (447)
Q Consensus       295 ~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRi  369 (447)
                      ..+.++.+.+.+.|.+.    ++.+..+ ..+.++|+.+.  +.+..++.+.| +++||.+..    .     ..+.+|+
T Consensus       296 ~~~~~r~~~~~~~l~~~~~~~~~~~~~~-~~g~~~~~~l~--~~~~~~l~~~l~~~~gv~~~~----~-----~~~~iRi  363 (388)
T PRK08637        296 QILKERYEKTKEVLYDGKYDDAWQAYPF-NSGYFMCLKLK--GVDAEELRVHLLEKYGIGTIA----L-----NETDLRI  363 (388)
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCcccccc-cceEEEEecCC--hHHHHHHHHHHhhhcceEEEe----c-----cCCceEE
Confidence            34455555666667554    4554443 34566777774  33556777766 578998742    1     2457999


Q ss_pred             ecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          370 GSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       370 g~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      ++....     +++++..++.|.++++
T Consensus       364 ~~~~~~-----~~~i~~~~~~l~~~~~  385 (388)
T PRK08637        364 AFSCVE-----EEDIPELFDSIYKAIK  385 (388)
T ss_pred             EeecCC-----HHHHHHHHHHHHHHHH
Confidence            876432     7888888888877775

>PRK07049 methionine gamma-lyase; Validated

Probab=99.77  E-value=7.6e-17  Score=160.40  Aligned_cols=217  Identities=18%  Similarity=0.149  Sum_probs=147.9

Q ss_pred             hhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccc
Q 013217           61 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI  140 (447)
Q Consensus        61 ~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~  140 (447)
                      ++....+|    +.++++.|.+.     .+.++||++|+.+++.++++|||+|++..+.|+++.....    ..+...| 
T Consensus        82 ~Pt~~~Le----~~lA~leg~~~-----~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~----~~l~~~G-  147 (427)
T PRK07049         82 HPNSEIVE----DRLAVYEGAES-----AALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLA----KTFRNFG-  147 (427)
T ss_pred             CcCHHHHH----HHHHHHhCCCc-----EEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHH----HHHHhcC-
Confidence            44456777    57888998764     3556889899999999999999999999998887632100    0011223 


Q ss_pred             eeEEEecccCCCCCCCCHHHHHHHhhh----hCCcEEEEcCCCCCC--CCChHHHHHHHHH------hCCEEEEehhhhc
Q 013217          141 YFESMPYRLDESTGLVDYDMLEKTAIL----FRPKLIIAGASAYPR--DFDYPRMRQIADA------VGALLMMDMAHIS  208 (447)
Q Consensus       141 ~~~~~~~~~~~~~~~id~~~l~~~~~~----~~~klii~~~~~~~~--~~~~~~i~~ia~~------~g~~livD~a~~~  208 (447)
                       .+++.+. +    ..|++++++.+.+    .+||+|++++++||+  ..|+++|.++|+.      +++++++|++...
T Consensus       148 -i~~v~~~-~----~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~  221 (427)
T PRK07049        148 -VGAVGFA-D----GLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLG  221 (427)
T ss_pred             -cEEEEEe-C----CCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccc
Confidence             2444432 1    2577888776642    378999999899987  7899999999988      7999999998432


Q ss_pred             cccccccCCCCCC-cccEEEeCCCcccCC---CCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHH
Q 013217          209 GLVAASVVADPFK-YCDVVTTTTHKSLRG---PRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH  284 (447)
Q Consensus       209 g~~~~~~~~~~~~-~~Di~~~s~~K~l~G---p~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~  284 (447)
                      . .    ...|+. ++|+++.|++|+++|   .++|+++.++      ++.+.+.....+. .++.+.....   .+++.
T Consensus       222 ~-~----~~~pl~~g~divv~S~SK~~gG~~glr~G~vv~~~------~l~~~l~~~~~~~-g~~ls~~~a~---l~~r~  286 (427)
T PRK07049        222 P-V----FQKPLEHGADLSVYSLTKYVGGHSDLVAGAVLGRK------ALIRQVRALRSAI-GTQLDPHSCW---MLGRS  286 (427)
T ss_pred             c-c----cCCccccCCCEEEEcCceeecCCCCcEEEEEECCH------HHHHHHHHHHHhc-CCCCCHHHHH---HHHcC
Confidence            2 2    122333 589999999999875   4679998776      6777665533222 1222222211   22333


Q ss_pred             hcChhHHHHHHHHHHHHHHHHHHHHHC-CcE
Q 013217          285 AQSPEFKVYQNKVVSNCRALASRLVEL-GYK  314 (447)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  314 (447)
                      +.  .+..+++++.+++..+++.|++. ++.
T Consensus       287 L~--tl~~R~~~~~~~a~~la~~L~~~p~V~  315 (427)
T PRK07049        287 LE--TLVLRMERANRNARAVAEFLRDHPKVE  315 (427)
T ss_pred             CC--hHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            32  35677888899999999999883 543

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.77  E-value=6e-16  Score=154.08  Aligned_cols=318  Identities=14%  Similarity=0.115  Sum_probs=187.3

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc----
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  107 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~----  107 (447)
                      .+|.|.+++.+.+.. +..+.  ..++  .+...    .+.+.++++++.+.     .+.++||++||..++....    
T Consensus        48 ~~p~v~~a~~~~~~~-~~~~~--~~~~--~~~~~----~~~~~l~~~~~~~~-----~~~~~SGs~A~e~al~~~~~~~~  113 (400)
T PTZ00125         48 CHPKILAALINQAQK-LTLTS--RAFY--NDVLG----LAEKYITDLFGYDK-----VLPMNSGAEAGETALKFARKWGY  113 (400)
T ss_pred             CCHHHHHHHHHHHHh-ccccc--cccc--CHHHH----HHHHHHHhCCCCCE-----EEEeCCcHHHHHHHHHHHHHHHH
Confidence            489999999887653 22121  1111  12223    34467778887653     3446999999999888663    


Q ss_pred             ------CCCCEEEEecCCCCcccCCCccccccccccccce-eEEEecccCCC---CCCCCHHHHHHHhhhhCCcEEEEcC
Q 013217          108 ------KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDES---TGLVDYDMLEKTAILFRPKLIIAGA  177 (447)
Q Consensus       108 ------~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~---~~~id~~~l~~~~~~~~~klii~~~  177 (447)
                            ..+++|+..+-.+.|....       .+...+.. ......+..+.   -...|++++++.++..++++|++.+
T Consensus       114 ~~~~~~~~~~~vl~~~~~~Hg~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~v~~ep  186 (400)
T PTZ00125        114 EVKGIPENQAKIIFCNGNFSGRTIG-------ACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQDPNVAAFIVEP  186 (400)
T ss_pred             hccCCCCCCCeEEEECCCcCCccHH-------HHhhcCCcchhccCCCCCCCceEeCCCCHHHHHHHhCCCCeEEEEEcC
Confidence                  1357888877554332110       11111110 00000000000   0124899999998634789999876


Q ss_pred             CCCCC--CCC----hHHHHHHHHHhCCEEEEehhhhcccccccc-CCCCCC--cccEEEeCCCcccCCC--CCceEEeec
Q 013217          178 SAYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASV-VADPFK--YCDVVTTTTHKSLRGP--RGGMIFFKK  246 (447)
Q Consensus       178 ~~~~~--~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~~~~~--~~Di~~~s~~K~l~Gp--~gG~i~~~~  246 (447)
                      +++++  ..+    +++|.++|++||+++|+|++| .|+...+. ......  ..|++++|  |+++++  +.|++++++
T Consensus       187 ~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~-~g~g~~G~~~~~~~~~~~pd~~~~s--K~l~~g~~~ig~v~~~~  263 (400)
T PTZ00125        187 IQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQ-TGLGRTGKLLAHDHEGVKPDIVLLG--KALSGGLYPISAVLAND  263 (400)
T ss_pred             ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccc-cCCCccchhhHHHhcCCCCCEEEEc--ccccCCCcCcEEEEEcH
Confidence            55443  455    899999999999999999997 44432221 111111  25777765  998643  569999988


Q ss_pred             CCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC----CcE-eeeCCCC
Q 013217          247 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL----GYK-LVSGGSD  321 (447)
Q Consensus       247 ~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~-~~~~~~~  321 (447)
                            ++.+.+.........++ +....++...+++.+.++++   .++..+..+.+++.|++.    ++. .+.+  .
T Consensus       264 ------~~~~~~~~~~~~~t~~~-~~~~~~aa~~~l~~i~~~~~---~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~--~  331 (400)
T PTZ00125        264 ------DVMLVIKPGEHGSTYGG-NPLACAVAVEALEVLKEEKL---AENAQRLGEVFRDGLKELLKKSPWVKEIRG--K  331 (400)
T ss_pred             ------HHHhhccCCCCCCCCCc-CHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHhcCCCeEEEec--c
Confidence                  67776654322222332 33334444456766554343   445555667777777652    221 1121  2


Q ss_pred             CeeEEecCCC-CCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          322 NHLVLVDLRP-MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       322 ~~~~~v~~~~-~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      ..+.++.+.. .+.+...+.+.|.++||.+..    +     ....||++++...+    ++|++++.+.|.+++...
T Consensus       332 g~~~~v~~~~~~~~~~~~~~~~l~~~Gv~v~~----~-----~~~~lRi~~~~~~~----~~~i~~~l~~l~~~l~~~  396 (400)
T PTZ00125        332 GLLNAIVFDHSDGVNAWDLCLKLKENGLLAKP----T-----HDNIIRFAPPLVIT----KEQLDQALEIIKKVLKSF  396 (400)
T ss_pred             cEEEEEEEccCcchHHHHHHHHHHHCCeEEee----c-----CCCEEEEECCccCC----HHHHHHHHHHHHHHHHHH
Confidence            3344554532 233456677888889999843    2     23589999886666    999999999999888754

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=99.77  E-value=3.4e-16  Score=150.22  Aligned_cols=337  Identities=13%  Similarity=0.068  Sum_probs=212.7

Q ss_pred             hhcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCC-cccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHH
Q 013217           19 QFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP   97 (447)
Q Consensus        19 ~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~-~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~   97 (447)
                      +++..++.|++..+|++|++++.+.+.+.-..|..-. ..+.+.++.+.++ .+.+.++++|+.+.+.- +.+...+||.
T Consensus         2 ~~~~~nF~aGPa~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~-~~~~~Lr~Ll~~P~~y~-Vlfl~GggT~   79 (364)
T PRK12462          2 HRNQLNFSGGPGALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLA-QAEADLRDLLGIPDEYG-VVFLQGGSSL   79 (364)
T ss_pred             CcccceecCCCcCCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHH-HHHHHHHHHhCCCCCCe-EEEEeccHHH
Confidence            4567899999999999999999987776322222111 1234455555554 67789999999954332 4455677889


Q ss_pred             HHHHHHHHhcCCCCEEE-EecCCCCcccCCCccccccccccccceeEEEeccc-CCCCCCCCHHHHHHHhhhhCCcEEEE
Q 013217           98 ANFEVYTAILKPHDRIM-GLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-DESTGLVDYDMLEKTAILFRPKLIIA  175 (447)
Q Consensus        98 a~~~~~~al~~pgd~Vl-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~id~~~l~~~~~~~~~klii~  175 (447)
                      ++.++.+.++++||+++ +..   .|+++..+..   .+...| .++++...- ...+..+++++++  +.+ +.+.|.+
T Consensus        80 ~~ea~~~Nll~~g~~~~~~~~---tG~fg~r~~~---ea~~~g-~v~~~~~~~~~~~~~~p~~~~~~--~~~-d~~~v~~  149 (364)
T PRK12462         80 QFSMIPMNFSRPGAAAPEYVT---TGYWSRKAIG---EASRVA-AMRVVWDGAASGYRTLPSLAELD--WDA-RAPFRHY  149 (364)
T ss_pred             HHHHHHHHcCCCCCcEEEEEe---CCHHHHHHHH---HHHhcC-CceEecCcCCCCCCcCCCHHHhc--cCC-CCcEEEE
Confidence            99999999999999765 333   3444333211   112223 222222100 0112356677652  222 4677777


Q ss_pred             cCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchh
Q 013217          176 GASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGV  252 (447)
Q Consensus       176 ~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~  252 (447)
                      ++..+++  ..+     ++.+.+++++++|++...|..+     .+++..|++.++.+|+|+ |.| +++++++      
T Consensus       150 t~NETstGv~~~-----~~~~~~~~llvvD~sS~~~s~p-----id~~~~dvi~agsQKnlg-P~Gltvvivs~------  212 (364)
T PRK12462        150 VSNETVEGLQFP-----DAAGLPDSPLIADMSSDFMSRP-----FDVEAYGMVYAHAQKNLG-PAGVTVAIIRR------  212 (364)
T ss_pred             ccCCCCceEecC-----cccccCCCeEEEEcCchhhCCC-----CChHHccEEEeeccccCC-CCceEEEEECH------
Confidence            6433332  333     2333468999999986554332     223345999999999996 889 9888888      


Q ss_pred             hHHHHhhhcc-----------CCCCCCCCcHHHHHHHHHHHHHhcCh--hHHHHHHHHHHHHHHHHHHHHHCC-cEeee-
Q 013217          253 ELESAINNAV-----------FPGLQGGPHNHTIGGLAVCLKHAQSP--EFKVYQNKVVSNCRALASRLVELG-YKLVS-  317 (447)
Q Consensus       253 ~~~~~i~~~~-----------~~~~~g~p~~~~~aal~~al~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~-  317 (447)
                      +..++.....           ...+..||+...+.++..+++.+.++  |.+.+.++..+.++.+++.+.+.. +.... 
T Consensus       213 ~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~~~  292 (364)
T PRK12462        213 ALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVIDCHA  292 (364)
T ss_pred             HHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCC
Confidence            3443332210           11234588899999999999999877  889999999999999999998854 43322 


Q ss_pred             -CCCCCeeE-EecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          318 -GGSDNHLV-LVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       318 -~~~~~~~~-~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                       +...+.+. .+.+.... ...++.+..+++|+.--    -|+..   -+++|+|.-.    .|+.++++.|++++++.-
T Consensus       293 ~~~~RS~mnv~f~~~~~~-l~~~f~~~a~~~gl~~l----kGhr~---vgg~Ras~yn----a~~~e~v~~L~~fm~~f~  360 (364)
T PRK12462        293 HRAARSTMNVAFRFRQPR-LDTLFKEQSTEAGFCGL----SGHRS---IGGIRASLYN----AVSEQAVSRLCAFLKDFA  360 (364)
T ss_pred             ChhhcCcceEEEEcCCHH-HHHHHHHHHHHCCCccc----cCCcc---cCceEEEcCC----CCCHHHHHHHHHHHHHHH
Confidence             11223332 23433322 23456667778898763    23322   3579998643    356999999999988754


Q ss_pred             H
Q 013217          396 E  396 (447)
Q Consensus       396 ~  396 (447)
                      +
T Consensus       361 ~  361 (364)
T PRK12462        361 I  361 (364)
T ss_pred             H
Confidence            3

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.76  E-value=4.5e-16  Score=153.66  Aligned_cols=313  Identities=16%  Similarity=0.131  Sum_probs=187.1

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh-cCCC
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPH  110 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al-~~pg  110 (447)
                      .+|.|.+++.+.+.+...   ....+.      ..++....+++.+.++.+.     .+.++||++|+.+++... .-+|
T Consensus        46 ~~p~v~~a~~~~~~~~~~---~~~~~~------~~~~~~la~~l~~~~~~~~-----~~~~~sG~~a~~~A~~~a~~~~g  111 (377)
T PRK02936         46 CHPTVTKAVQEQLDDIWH---VSNLFT------NSLQEEVASLLAENSAGDL-----VFFCNSGAEANEAALKLARKHTG  111 (377)
T ss_pred             CCHHHHHHHHHHHHhccc---cccccC------CHHHHHHHHHHHhcCCCCE-----EEEeCCcHHHHHHHHHHHHHhcC
Confidence            479999999888765211   111111      2344334456666665432     244689999999988854 2344


Q ss_pred             -CEEEEecCCCCcccCCCccccccccccccce-eEEEecccCCCC---CCCCHHHHHHHhhhhCCcEEEEcCCCCC-CC-
Q 013217          111 -DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDEST---GLVDYDMLEKTAILFRPKLIIAGASAYP-RD-  183 (447)
Q Consensus       111 -d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~---~~id~~~l~~~~~~~~~klii~~~~~~~-~~-  183 (447)
                       ++|++.+..+.|....+       +..++.. +.....+..++.   ...|++++++.+.+ ++++|++.+.... +. 
T Consensus       112 ~~~vi~~~~~~Hg~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~ii~e~i~~~~G~~  183 (377)
T PRK02936        112 KSKIVTFEQSFHGRTFGT-------MSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMNE-EVAAVMLEVVQGEGGVI  183 (377)
T ss_pred             CCeEEEECCCcCCCcHHh-------hhccCCccccccCCCCCCCceEeCCCCHHHHHHhccC-CeEEEEEecccCCCCCc
Confidence             67888876654332111       1111110 000000000000   01278999998876 7888888743332 22 


Q ss_pred             ----CChHHHHHHHHHhCCEEEEehhhhccccccccCCC--CCC-cccEEEeCCCcccC-CCCCceEEeecCCcchhhHH
Q 013217          184 ----FDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFK-YCDVVTTTTHKSLR-GPRGGMIFFKKDPVLGVELE  255 (447)
Q Consensus       184 ----~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~--~~~-~~Di~~~s~~K~l~-Gp~gG~i~~~~~~~~~~~~~  255 (447)
                          ..+++|.++|++||+++|+|++| .|+...+....  ... ..|++  +++|+++ |.++|+++.++      ++.
T Consensus       184 ~~~~~~l~~l~~l~~~~~~~lI~DEv~-~g~g~~g~~~~~~~~~~~~di~--t~sK~l~~G~~ig~v~~~~------~~~  254 (377)
T PRK02936        184 PADPAFLQEVQTLCKKFGALLIIDEVQ-TGIGRTGTLFAYEQFGLDPDIV--TVAKGLGNGIPVGAMIGKK------ELG  254 (377)
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEeccc-cCCCcCchhhHHHhhCCCCcEE--EEcccccCCCccEEEEEcH------HHH
Confidence                23899999999999999999998 56543331100  011 24665  4679985 56789998887      677


Q ss_pred             HHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC--CcEeeeC-CCCCeeEEecCCCC
Q 013217          256 SAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVSG-GSDNHLVLVDLRPM  332 (447)
Q Consensus       256 ~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~-~~~~~~~~v~~~~~  332 (447)
                      +.+.........+ .+....++..++++.+..   .++.+++.++.+.+++.|++.  ++..+.. .....++++++.. 
T Consensus       255 ~~~~~~~~~~t~~-~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~-  329 (377)
T PRK02936        255 TAFGPGSHGSTFG-GNPLAMAAAKEVLQVIKQ---PSFLEEVQEKGEYFLQKLQEELEHLECVKNIRGKGLMIGIECTE-  329 (377)
T ss_pred             hhccCCCCCCCCC-CCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCcEEeEeecceEEEEEecc-
Confidence            7765433222233 355555566667776532   234667777888888888762  3332221 0123566777653 


Q ss_pred             CCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          333 GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       333 ~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                        +...+.+.|.++||.+..    .     ..+.+|++++...+    +++++++++.|.+++
T Consensus       330 --~~~~~~~~l~~~gv~v~~----~-----g~~~lRi~p~~~~~----~~~i~~~i~~l~~~~  377 (377)
T PRK02936        330 --EVAPVIEQLREEGLLVLS----A-----GPNVIRLLPPLVVT----KEELDQAVYLLKKVL  377 (377)
T ss_pred             --hHHHHHHHHHHCCeEEec----C-----CCCEEEEECCcccC----HHHHHHHHHHHHHhC
Confidence              256788889999999842    2     13589999877776    999999999997753

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=99.75  E-value=2e-16  Score=156.00  Aligned_cols=296  Identities=18%  Similarity=0.213  Sum_probs=194.1

Q ss_pred             HHHHHHHHHcCCCCCccceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecc
Q 013217           70 LCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR  148 (447)
Q Consensus        70 ~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  148 (447)
                      .+++.+++.||+++..+   +  ++|| .||.++++++++|||.||+....|-++. |       .+.++|..-....-.
T Consensus        74 eAqe~aA~~fgAd~tyF---v--vNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~-~-------glilaGa~Pvyl~p~  140 (557)
T COG1982          74 EAQELAARVFGADHTYF---V--VNGTSTANKAVINAVLTPGDKVLVDRNCHKSIH-H-------GLILAGATPVYLEPS  140 (557)
T ss_pred             HHHHHHHHHhCCCceEE---E--ECCccHHHHHHHHhhcCCCCEEEecCCccHHHH-H-------HHHHcCCceEEecCC
Confidence            45678999999998643   1  5665 7999999999999999999888776653 2       234555422221111


Q ss_pred             cCCC---CCCCCHHHHHHHhhhhC-C-cEEEEcCCCCCC-CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCC--
Q 013217          149 LDES---TGLVDYDMLEKTAILFR-P-KLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF--  220 (447)
Q Consensus       149 ~~~~---~~~id~~~l~~~~~~~~-~-klii~~~~~~~~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~--  220 (447)
                      .++.   -+.|+.+.+++.+.+++ - |++++..++|-+ +.|.++|.+.++..++|+.+|++|.+.....+..+...  
T Consensus       141 ~np~~gi~ggI~~~~~~~~l~~~~~~~k~~vitnpTYdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~  220 (557)
T COG1982         141 RNPLYGIIGGIPLETFKEALLAHPDAEKLAVITNPTYDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALN  220 (557)
T ss_pred             CCccccccCCCCHHHHHHHHHhChhhheeEEEecCccceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhhh
Confidence            2221   14689999998776632 3 677777677665 88999999999999999999999876555444444322  


Q ss_pred             CcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHH----HH
Q 013217          221 KYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY----QN  295 (447)
Q Consensus       221 ~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~----~~  295 (447)
                      ..+|+++-|+||.+++..- ++|.++++..   -..++++.+.....+++|+...+|++.+|-.+....| ++.    ..
T Consensus       221 ~~~~~~tqS~HK~l~alSQaS~iHv~~~~~---~~~~r~nea~~~h~STSPsY~l~ASlD~Ar~~~~~~G-~~l~~~~~~  296 (557)
T COG1982         221 GGADFVTQSTHKLLAALSQASMIHVKDGRA---VNHERFNEALMMHQSTSPSYPLMASLDVARMQEGNAG-RELWQEVID  296 (557)
T ss_pred             cCceEEEechhhhhhhhhhhHHHhhCCCcc---CCHHHHHHHHHHHccCCchHHHHHHHHHHHHhhhhhh-HHHHHHHHH
Confidence            2589999999999987655 8888886210   2345566555445578899999999998655444333 344    45


Q ss_pred             HHHHHHHHHHHHHHHC-CcEeeeCCC--------------------CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCC
Q 013217          296 KVVSNCRALASRLVEL-GYKLVSGGS--------------------DNHLVLVDLRPMGIDGARVEKILDMASITLNKNS  354 (447)
Q Consensus       296 ~~~~~~~~l~~~L~~~-g~~~~~~~~--------------------~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~  354 (447)
                      ...+.++.+++...+. ++.++.+..                    |.--+++..+..|+++..+.++|+++||......
T Consensus       297 ~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~tp~~Gipg~~v~~~L~e~gii~e~~~  376 (557)
T COG1982         297 EAIDFRKALRRLINEIGFFPVLQPEKLDPPTGWHGFEDYADDQYFLDPTKLTITTPEFGIPGAIVAKYLREHGIIPEETG  376 (557)
T ss_pred             HHHHHHHHHHHHHHhcCCeeeccccccCCcccccccccccccceeccccEEEEecCCCCCcHHHHHHHHHHcCCeeeecC
Confidence            5555566666666553 466554321                    1111234444678999999999999999875431


Q ss_pred             CCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217          355 VPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       355 ~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~  393 (447)
                         +.    .--+=+++..    |-...++++|.++...
T Consensus       377 ---d~----~~lll~~~~~----gk~~~lv~~L~~f~r~  404 (557)
T COG1982         377 ---DY----SNLLLFSPGI----GKWQTLVDRLLEFKRR  404 (557)
T ss_pred             ---Cc----eeeEEeeecc----chHHHHHHHHHHHHHh
Confidence               10    0012222211    3346677777776653

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.74  E-value=6.7e-16  Score=165.17  Aligned_cols=274  Identities=16%  Similarity=0.114  Sum_probs=179.4

Q ss_pred             HHHHHHHHHcCCCCCccceeeecC-CcHHHHHHHHHHh-cCCC--CEEEEecCCCCcccCCCccccccccccccceeEEE
Q 013217           70 LCQKRALAAFNLDENKWGVNVQPL-SGSPANFEVYTAI-LKPH--DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESM  145 (447)
Q Consensus        70 ~~~~~~~~~~g~~~~~~~~~v~~~-sGs~a~~~~~~al-~~pg--d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  145 (447)
                      ..+..+++++|++..    |+... ++|.+..++++++ ++++  |+|++.+..|++.......    .....|  ++++
T Consensus       125 ~~Qt~la~LtG~~~a----naSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t----~a~~~G--~ev~  194 (954)
T PRK05367        125 NFQTMVADLTGLEIA----NASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLRT----RAEPLG--IEVV  194 (954)
T ss_pred             HHHHHHHHHHCCChh----hccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHHH----HHHhCC--CEEE
Confidence            456789999999974    33334 4446666677776 5554  9999999888876532210    012233  4555


Q ss_pred             ecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC-CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-cc
Q 013217          146 PYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YC  223 (447)
Q Consensus       146 ~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-~~  223 (447)
                      .++.+.     |.+      .+ ++..+++..|++.+ ..|+++|+++||++|+++++|+.+.+..+..    .|-. ++
T Consensus       195 ~~~~~~-----d~~------~~-~~~~vlvq~p~~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~l~----~pge~Ga  258 (954)
T PRK05367        195 VGDAAK-----ALD------HD-DVFGVLLQYPGTSGEVRDYTALIAAAHARGALVAVAADLLALTLLT----PPGEMGA  258 (954)
T ss_pred             EecCcc-----CCC------cc-cEEEEEEecCCCCeeeccHHHHHHHHHHcCCEEEEEehhhhccCCC----ChhhcCC
Confidence            544431     111      12 45556665666665 7799999999999999999999874443322    2222 69


Q ss_pred             cEEEeCCCcc-----cCCCCCceEEeecCCcchhhHHHHhhhccC---------C--------------CCCCCCcHHH-
Q 013217          224 DVVTTTTHKS-----LRGPRGGMIFFKKDPVLGVELESAINNAVF---------P--------------GLQGGPHNHT-  274 (447)
Q Consensus       224 Di~~~s~~K~-----l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~---------~--------------~~~g~p~~~~-  274 (447)
                      ||+++++|||     ++||..|++++++      ++...+.....         +              ...++.|... 
T Consensus       259 Di~vgs~qkfg~P~g~GGP~aGflavr~------~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~  332 (954)
T PRK05367        259 DIAVGSAQRFGVPMGFGGPHAAYFAVRD------AYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTA  332 (954)
T ss_pred             CEEEeeCcccCCCCCCCCCCEEEEEECH------HHHhhCCCCeeeeecccCCCcccccccccccccccccccccccchH
Confidence            9999999999     6778559999998      44433321000         0              0123433321 


Q ss_pred             --HHHHHHH--HHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEE
Q 013217          275 --IGGLAVC--LKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITL  350 (447)
Q Consensus       275 --~aal~~a--l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v  350 (447)
                        +.++.++  +..+...|.++..+++..++.++++.|.+.|+++..+. .-..+.+.+.   .+..++.+.|.++||.+
T Consensus       333 qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~G~~~~~~~-~f~~~~~~~~---~~~~~i~~~l~~~gi~~  408 (954)
T PRK05367        333 QVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRALGLEVVHDS-FFDTLTVEVG---GDAAAVLARALAAGINL  408 (954)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCcccCCCC-CCCeEEEeCC---CCHHHHHHHHHHCCcee
Confidence              2222222  23445567888899999999999999988898876432 1122334432   36788999999999998


Q ss_pred             ccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHH
Q 013217          351 NKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH  392 (447)
Q Consensus       351 ~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~  392 (447)
                      +..         ..+.+|++++.++|    ++|++++++++.
T Consensus       409 ~~~---------~~~~l~is~~e~~t----~~did~l~~~l~  437 (954)
T PRK05367        409 RRV---------DDDHVGISLDETTT----REDLAALLAVFG  437 (954)
T ss_pred             ccc---------cCCEEEEEecccCC----HHHHHHHHHHHc
Confidence            432         13479999999999    999999999996

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.74  E-value=1.9e-15  Score=150.31  Aligned_cols=313  Identities=15%  Similarity=0.123  Sum_probs=183.5

Q ss_pred             CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCC--
Q 013217           33 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH--  110 (447)
Q Consensus        33 ~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pg--  110 (447)
                      .|.+.+++.+.+... .  +....| . .+...+    ..+++++++|.+.     .+..+||++|+.+++..+..++  
T Consensus        57 ~p~v~~a~~~~~~~~-~--~~~~~~-~-~~~~~~----la~~l~~~~~~~~-----v~~~~gg~eA~~~al~~a~~~~~~  122 (396)
T PRK02627         57 HPKLVEAIQEQAAKL-I--HTSNLY-Y-IEPQEE----LAEKLVELSGMDK-----VFFCNSGAEANEAAIKLARKYGHK  122 (396)
T ss_pred             CHHHHHHHHHHHhhc-c--cccccc-C-CHHHHH----HHHHHHhhcCCCE-----EEECCCcHHHHHHHHHHHHHHhcc
Confidence            488999988776542 1  111111 1 222233    3367777777643     2445777899999988765433  


Q ss_pred             -----CEEEEecCCCCcccCCCccccccccccccce-eEEEecccCCCCC----CCCHHHHHHHhhhhCCcEEEEcCCCC
Q 013217          111 -----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDESTG----LVDYDMLEKTAILFRPKLIIAGASAY  180 (447)
Q Consensus       111 -----d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~----~id~~~l~~~~~~~~~klii~~~~~~  180 (447)
                           ++|++..+.+.|....       .+...+.. +.....++. .+.    ..|++++++++.+ ++++|++.++++
T Consensus       123 ~~~~~~~ii~~~~~yhg~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~l~~~i~~-~~~~vii~p~~~  193 (396)
T PRK02627        123 KGIEKPEIITAENSFHGRTLA-------TLSATGQPKYQEGFEPLV-EGFIYVPFNDIEALKAAITD-KTAAVMLEPIQG  193 (396)
T ss_pred             cCCCCCeEEEECCCcCcccHH-------HHHhcCCccccccCCCCC-CCceEeCCCCHHHHHHhcCC-CeEEEEEecccC
Confidence                 6788887765443110       01111110 000000111 111    2389999999965 899999975544


Q ss_pred             CC---CC---ChHHHHHHHHHhCCEEEEehhhhccccccccC-CC-CCC-cccEEEeCCCcccC-CCCCceEEeecCCcc
Q 013217          181 PR---DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVV-AD-PFK-YCDVVTTTTHKSLR-GPRGGMIFFKKDPVL  250 (447)
Q Consensus       181 ~~---~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~~-~~~-~~Di~~~s~~K~l~-Gp~gG~i~~~~~~~~  250 (447)
                      ++   ..   .+++|.++|+++|+++|+|+++. |+...+.. .. ... ..|+++  ++|.++ |.|.|++++++    
T Consensus       194 ~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~-g~g~~g~~~~~~~~~~~pdi~t--~sK~~~~G~rig~~~~~~----  266 (396)
T PRK02627        194 EGGVNPADKEYLQALRELCDENGILLILDEVQT-GMGRTGKLFAYQHYGIEPDIMT--LAKGLGGGVPIGAVLAKE----  266 (396)
T ss_pred             CCCCccCCHHHHHHHHHHHHHcCCEEEEechhc-CCCccCceeeehhcCCCCCEEE--EcchhhCCcccEEEEEcH----
Confidence            43   11   37899999999999999999974 55333311 10 011 246665  569985 56779999887    


Q ss_pred             hhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCC--cEeeeC-CCCCeeEEe
Q 013217          251 GVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG--YKLVSG-GSDNHLVLV  327 (447)
Q Consensus       251 ~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~~~~~-~~~~~~~~v  327 (447)
                        ++.+.+.........+ .+....++...+++.+...   ++.+++.++.+.+.+.|.+..  +..+.. .....++++
T Consensus       267 --~~~~~~~~~~~~~t~~-~~~~~~~aa~~~l~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~i  340 (396)
T PRK02627        267 --KVADVFTPGDHGSTFG-GNPLACAAALAVIEIIEEE---GLLENAAEVGEYLRAKLRELLEKYPGIKEVRGLGLMIGI  340 (396)
T ss_pred             --HHHhccCCCCCCCCCC-CCHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHHhCCCeeeeccCcEEEEE
Confidence              6777665432222223 3444455555566655432   345666666777777665521  211111 012344566


Q ss_pred             cCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          328 DLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       328 ~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      .+.   .+..++.+.|.+.||.+...    .     ...+|++++...+    +++++++.+.|.+++..
T Consensus       341 ~~~---~~~~~~~~~l~~~Gv~v~~~----~-----~~~lRi~~~~~~~----~~~i~~~~~~l~~~l~~  394 (396)
T PRK02627        341 ELD---RPAAEIVKKALEKGLLINVT----G-----DNVLRLLPPLIIS----KEEIDEAVDRLEEVLKE  394 (396)
T ss_pred             Eec---CcHHHHHHHHHHCCeEEeec----C-----CCEEEEECCcccC----HHHHHHHHHHHHHHHHh
Confidence            652   24677888887889998532    1     3479999876666    99999999999888753

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.74  E-value=4.3e-15  Score=147.79  Aligned_cols=310  Identities=13%  Similarity=0.087  Sum_probs=185.5

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc----
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  107 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~----  107 (447)
                      ..|+|.+++.+.+.+ +..+.+  . + ..+...+++    +++++++|.+.     .+.++||++||..++....    
T Consensus        54 ~~p~v~~a~~~~~~~-~~~~~~--~-~-~~~~~~~l~----~~l~~~~~~~~-----~~~~~SGs~A~e~ai~~a~~~~~  119 (401)
T TIGR01885        54 CHPKIVKALTEQAQK-LTLSSR--A-F-YNDVFGEFA----EYVTKLFGYDK-----VLPMNTGAEAVETAIKLARKWGY  119 (401)
T ss_pred             CCHHHHHHHHHHHHh-cccccc--c-c-CCHHHHHHH----HHHHhhcCCCE-----EEEeCccHHHHHHHHHHHHHHhh
Confidence            379999999887654 222221  1 1 122233444    57788888643     3446999999999888742    


Q ss_pred             -----CC-CCEEEEecCCCCcccCCCccccccccccccce----------eEEEecccCCCCCCCCHHHHHHHhhhh--C
Q 013217          108 -----KP-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY----------FESMPYRLDESTGLVDYDMLEKTAILF--R  169 (447)
Q Consensus       108 -----~p-gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~~~~~id~~~l~~~~~~~--~  169 (447)
                           .+ .++|+.....|.|...-       .+..++..          ..++.++      ..|+++++++++..  +
T Consensus       120 ~~~~~~~~~~~i~~~~~~yhg~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~le~~l~~~~~~  186 (401)
T TIGR01885       120 KVKGIPENQAIIVSAKGNFHGRTLG-------AISMSTDPDSRTNFGPYVPGFKKIP------YNNLEALEEALEDHGPN  186 (401)
T ss_pred             hhcCCCCCCCEEEEECCCcCcccHH-------HHhCcCCcccccccCCCCCCceEeC------CCCHHHHHHHHHhcCCC
Confidence                 13 45677776664432100       11111100          0111111      23789999988642  3


Q ss_pred             CcEEEEcCCCCC-C-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccCC-CC-CC-cccEEEeCCCcccCC--CC
Q 013217          170 PKLIIAGASAYP-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA-DP-FK-YCDVVTTTTHKSLRG--PR  238 (447)
Q Consensus       170 ~klii~~~~~~~-~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~-~~-~~-~~Di~~~s~~K~l~G--p~  238 (447)
                      ..+|++.+...+ + ..+    +++|.++|++||+++++|++| .|+...+... .. .. ..|++++|  |.++|  .+
T Consensus       187 ~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~-~g~g~~G~~~~~~~~~~~~di~~~g--K~l~~g~~~  263 (401)
T TIGR01885       187 VCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQ-TGLGRTGKLLCVDHENVKPDIVLLG--KALSGGVYP  263 (401)
T ss_pred             EEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechh-hCCCccchhhHHhhcCCCCCEEEee--ccccCCCCC
Confidence            456666533222 2 333    899999999999999999998 5654333210 00 11 25777765  99864  45


Q ss_pred             CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeee-
Q 013217          239 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVS-  317 (447)
Q Consensus       239 gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-  317 (447)
                      .|+++.++      ++.+.+.......+.++ +....++..++++.+.+++   +.++..+..+++.+.|++.+..++. 
T Consensus       264 ig~v~~~~------~i~~~~~~~~~~~t~~~-~p~~~~aa~a~L~~i~~~~---l~~~~~~~~~~~~~~L~~l~~~~~~~  333 (401)
T TIGR01885       264 VSAVLADD------DVMLTIKPGEHGSTYGG-NPLACAVAVAALEVLEEEK---LAENAEKLGEIFRDQLKKLPKPIITE  333 (401)
T ss_pred             cEEEEEcH------HHHhhccCCCCCCCCCC-CHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhccCCceeE
Confidence            67888877      67776654333333333 3444555556777765433   3456677788899999886544332 


Q ss_pred             -CCCCCeeEEecCCCC--CCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          318 -GGSDNHLVLVDLRPM--GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       318 -~~~~~~~~~v~~~~~--~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                       .+. ..+..+.+...  +.+..++.+.|.++||.+..    .     .+..+|++++..++    ++|++++++.|.++
T Consensus       334 ~~g~-g~~~~i~~~~~~~~~~~~~l~~~l~~~Gv~v~~----~-----~~~~lRi~p~l~~t----~~~i~~~l~~l~~~  399 (401)
T TIGR01885       334 VRGR-GLLNAIVIDESKTGRTAWDLCLKLKEKGLLAKP----T-----HGNIIRLAPPLVIT----EEQLDEGLEIIKKV  399 (401)
T ss_pred             Eeec-CeeEEEEeccCcchhHHHHHHHHHHhCCEEEEe----c-----CCCEEEEeCCccCC----HHHHHHHHHHHHHH
Confidence             122 22223333222  12456788888899999843    1     23589999886666    99999999999876


Q ss_pred             H
Q 013217          395 V  395 (447)
Q Consensus       395 l  395 (447)
                      +
T Consensus       400 l  400 (401)
T TIGR01885       400 I  400 (401)
T ss_pred             h
Confidence            5

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.73  E-value=6.1e-15  Score=146.25  Aligned_cols=311  Identities=15%  Similarity=0.103  Sum_probs=186.0

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc----
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  107 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~----  107 (447)
                      -.|.|.+++.+.+.+-+..+   ..+  ..+...+++    ++++++++.+.     ....+||++||..++....    
T Consensus        52 ~~p~v~~a~~~~~~~~~~~~---~~~--~~~~~~~la----~~L~~~~~~~~-----~~f~~SGseA~e~Alk~ar~~~~  117 (397)
T TIGR03246        52 AHPELVKALIEQADKLWHIG---NGY--TNEPVLRLA----KKLVDATFADK-----VFFCNSGAEANEAALKLARRYAL  117 (397)
T ss_pred             CCHHHHHHHHHHHHhccccc---Ccc--CCHHHHHHH----HHHHhhCCCCE-----EEEeCCcHHHHHHHHHHHHHHHH
Confidence            47999999988776522111   111  122233343    57777776543     2446899999999888651    


Q ss_pred             ----CCCCEEEEecCCC-CcccCCCccccccccccccce-----e-----EEEecccCCCCCCCCHHHHHHHhhhhCCcE
Q 013217          108 ----KPHDRIMGLDLPH-GGHLSHGFMTPKRRVSGTSIY-----F-----ESMPYRLDESTGLVDYDMLEKTAILFRPKL  172 (447)
Q Consensus       108 ----~pgd~Vl~~~~~~-~~~~~~~~~~~~~~~~~~g~~-----~-----~~~~~~~~~~~~~id~~~l~~~~~~~~~kl  172 (447)
                          ...++|+..+-.| |.+..        .+...+..     +     .+..++      ..|++++++++.+ ++++
T Consensus       118 ~~~~~~r~~ii~~~~~yHG~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~l~~-~~aa  182 (397)
T TIGR03246       118 DKHGADKSEIVAFKNSFHGRTLF--------TVSVGGQPKYSQGFAPLPGGIKHAP------YNDLAAAKALISD-KTCA  182 (397)
T ss_pred             hcCCCCCCEEEEECCCcCCccHH--------HHHhcCCcccccCCCCCCCceEEeC------CCCHHHHHHHhcc-CeEE
Confidence                1235677766443 33210        11111110     0     111111      2489999999876 7888


Q ss_pred             EEEcCCCCC-CC-----CChHHHHHHHHHhCCEEEEehhhhccccccccCCC--CCC-cccEEEeCCCccc-CCCCCceE
Q 013217          173 IIAGASAYP-RD-----FDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFK-YCDVVTTTTHKSL-RGPRGGMI  242 (447)
Q Consensus       173 ii~~~~~~~-~~-----~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~--~~~-~~Di~~~s~~K~l-~Gp~gG~i  242 (447)
                      |++.+.+.. +.     ..+++|+++|++||+++|+|++| .|+...+....  .+. ..|+++  +.|.+ +|.+.|++
T Consensus       183 vi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~-tG~Gr~G~~~a~~~~gv~pDi~t--~~K~lggG~pigav  259 (397)
T TIGR03246       183 VIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQ-TGVGRTGELYAYMHYGVTPDILT--SAKALGGGFPIGAM  259 (397)
T ss_pred             EEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechh-hcCCccccchhhhhcCCCCCEEE--eehhhhCCcceeEE
Confidence            888843322 22     23789999999999999999998 66633332110  111 257775  56998 46666888


Q ss_pred             EeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCC--cEeeeCCC
Q 013217          243 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG--YKLVSGGS  320 (447)
Q Consensus       243 ~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~~~~~~~  320 (447)
                      ++++      ++.+.+.......+.+ .++...++..++++.+..   .+..+++.++.++|.+.|++.+  +.++....
T Consensus       260 ~~~~------~i~~~~~~~~~~~t~~-~~p~~~aaa~a~l~~~~~---~~l~~~~~~~~~~l~~~L~~l~~~~~~~~~vr  329 (397)
T TIGR03246       260 LTTT------EIAAHLKVGTHGTTYG-GNPLACAVAGKVLDLVNT---PELLAGVKQRHDLFVDGLEKINARYNVFSEIR  329 (397)
T ss_pred             EEcH------HHHHhccCCCcCCCCC-CCHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHhcCCCeEeee
Confidence            8887      6777665432222233 344445555556766543   2457778888888988887743  22222101


Q ss_pred             -CCeeEEecCCCC-CCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          321 -DNHLVLVDLRPM-GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       321 -~~~~~~v~~~~~-~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                       ...++.+.+.+. ......+.+.|.++||.+...         .++.+|++++..++    ++|++++++.|.+++..
T Consensus       330 g~G~~~~i~~~~~~~~~~~~~~~~l~~~Gv~~~~~---------g~~~lR~~p~~~~t----~~~i~~~~~~l~~~l~~  395 (397)
T TIGR03246       330 GKGLLIGAVLTEAYQGKAKQFVNAAAEEGVIALIA---------GPNVVRFAPSLVIS----DDDIDEGLARFERAIEQ  395 (397)
T ss_pred             cCceEEEEEEcCchhhHHHHHHHHHHHCCeEEeec---------CCCEEEEeCCCCCC----HHHHHHHHHHHHHHHHH
Confidence             122222333221 113456778888899998431         13589999887777    99999999999888763

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.73  E-value=8.4e-15  Score=138.67  Aligned_cols=318  Identities=20%  Similarity=0.205  Sum_probs=195.1

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC-CCCCccceeeecCCcHHHHHHHHHHhc---
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN-LDENKWGVNVQPLSGSPANFEVYTAIL---  107 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g-~~~~~~~~~v~~~sGs~a~~~~~~al~---  107 (447)
                      ..|.+.+++...+..-+   ..+.-|+.     +..++. .+++.++.+ .+.     .+.++||++||.+++....   
T Consensus        59 ~hP~iv~al~~Q~~kl~---h~sn~~~~-----~~~~~l-a~~L~~~s~~~d~-----vff~NSGaEA~EaAiKlARk~~  124 (404)
T COG4992          59 CHPALVEALKEQAEKLW---HVSNLFYN-----EPQAEL-AEKLVELSPFADR-----VFFCNSGAEANEAALKLARKYT  124 (404)
T ss_pred             CCHHHHHHHHHHHHHhh---hcccccCC-----hHHHHH-HHHHHhhCccccE-----EEEcCCcHHHHHHHHHHHHHHc
Confidence            37999999888665533   12222221     122222 356777776 332     3456999999999887542   


Q ss_pred             C-C-CCEEEEecCCCCcccCCCccccccccccccce-eEEEecccCCCC---CCCCHHHHHHHhhhhCCcEEEEcCC-CC
Q 013217          108 K-P-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDEST---GLVDYDMLEKTAILFRPKLIIAGAS-AY  180 (447)
Q Consensus       108 ~-p-gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~---~~id~~~l~~~~~~~~~klii~~~~-~~  180 (447)
                      . | .-+|+...-.+.|.-. +      .+++.+.. +.--..|+-+.-   -.-|++++++++++ +|.+|++.+- .-
T Consensus       125 ~~~~k~~Iia~~nsFHGRT~-g------alS~t~~~ky~~~F~Pl~~g~~~vpfnDi~al~~ai~~-~taAvivEPIQGE  196 (404)
T COG4992         125 GDPEKSKIIAFENSFHGRTL-G------ALSATGQPKYRKGFGPLLPGFRHVPFNDIEALEAAIDE-DTAAVIVEPIQGE  196 (404)
T ss_pred             CCCCCcEEEEEcCCcCCccc-e------eeeccCChhhccCCCCCCCCceecCCCCHHHHHHHhcc-CeEEEEEecccCC
Confidence            2 2 2378877766544311 1      22333321 111111122111   13589999999998 8999998732 22


Q ss_pred             CCCC--C---hHHHHHHHHHhCCEEEEehhhhccccccccC-CCC-CC-cccEEEeCCCcccCC-CCCceEEeecCCcch
Q 013217          181 PRDF--D---YPRMRQIADAVGALLMMDMAHISGLVAASVV-ADP-FK-YCDVVTTTTHKSLRG-PRGGMIFFKKDPVLG  251 (447)
Q Consensus       181 ~~~~--~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~~~-~~-~~Di~~~s~~K~l~G-p~gG~i~~~~~~~~~  251 (447)
                      +++.  +   +++++++|++||+++|.|++| .|+--.|.. ..- .. ..||++..  |.|+| .+.|.++.++     
T Consensus       197 gGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQ-tG~GRTGk~fA~e~~gV~PDI~tla--K~LgGG~PigA~la~~-----  268 (404)
T COG4992         197 GGVIPAPPEFLKALRELCDEHGALLILDEVQ-TGLGRTGKLFAYEHYGVEPDILTLA--KALGGGFPIGAMLATE-----  268 (404)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCeEEEEeccc-cCCCccchHHHHHHhCCCCCEEEee--ccccCCccceeeEEch-----
Confidence            2322  1   589999999999999999999 565433321 100 00 25898877  99954 4447776665     


Q ss_pred             hhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC--CcEeeeCCCCCeeE-Eec
Q 013217          252 VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVSGGSDNHLV-LVD  328 (447)
Q Consensus       252 ~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~-~v~  328 (447)
                       .+.+.+.......+.|+ |+..+++..++++.+.++++   .++..+...+|.+.|++.  .+.++..-...-++ =+.
T Consensus       269 -~~~~~~~~G~HgSTfGG-NpLacAv~~a~l~~l~~e~l---l~~v~~~g~~~~~~L~~l~~~~~~v~~vRG~GLmiGie  343 (404)
T COG4992         269 -EIASAFTPGDHGSTFGG-NPLACAVALAVLEVLLEEGL---LENVREKGEYLLQRLRELKRRYPLVKEVRGRGLMIGIE  343 (404)
T ss_pred             -hhhhcCCCCcccCCCCc-CHHHHHHHHHHHHHHcchhH---HHHHHHHHHHHHHHHHHHhhcCCceeeeecceeEEEEE
Confidence             56665555444334443 55666666668888876665   666777788888888773  33333321111222 234


Q ss_pred             CCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          329 LRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       329 ~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      +.... ...++.+.|.+.|+.+...         .+..||+.++...+    ++|+++..+.+.+++...
T Consensus       344 l~~~~-~a~~~~~~~~~~gvL~~~a---------~~~ViR~~PpL~i~----~eei~~~~~~l~~~l~~~  399 (404)
T COG4992         344 LKEPY-RARDIVRALREEGVLVLPA---------GPNVIRFLPPLVIT----EEEIDEALDALERALAAA  399 (404)
T ss_pred             ecCcc-cHHHHHHHHHHCCeEEecC---------CCCeEEecCCccCC----HHHHHHHHHHHHHHHHHh
Confidence            43321 3678999999999998532         23489999887777    999999999999998854

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.71  E-value=9e-15  Score=145.55  Aligned_cols=310  Identities=15%  Similarity=0.113  Sum_probs=185.4

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc----
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  107 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~----  107 (447)
                      -.|.|.+++...+.+....   +.  ....+...+++    ++++++++.+.     ....+||++||.+++....    
T Consensus        57 ~~p~v~~a~~~~~~~~~~~---~~--~~~~~~~~~l~----~~l~~~~~~~~-----~~~~~sGseA~e~a~klar~~~~  122 (403)
T PRK05093         57 CHPALVKALKEQGEKLWHI---SN--VFTNEPALRLA----KKLIDATFAER-----VFFANSGAEANEAAFKLARRYAC  122 (403)
T ss_pred             CCHHHHHHHHHHHHhcCcc---cC--ccCCHHHHHHH----HHHHhhCCCCE-----EEEeCchHHHHHHHHHHHHHHHh
Confidence            4899999998877642111   11  11122222333    56777776543     2445999999999887541    


Q ss_pred             ----CCCCEEEEecCCC-CcccCCCccccccccccccc-----ee-----EEEecccCCCCCCCCHHHHHHHhhhhCCcE
Q 013217          108 ----KPHDRIMGLDLPH-GGHLSHGFMTPKRRVSGTSI-----YF-----ESMPYRLDESTGLVDYDMLEKTAILFRPKL  172 (447)
Q Consensus       108 ----~pgd~Vl~~~~~~-~~~~~~~~~~~~~~~~~~g~-----~~-----~~~~~~~~~~~~~id~~~l~~~~~~~~~kl  172 (447)
                          ...++|+..+-.+ |.+..        .+.+.+.     .+     .++.++      ..|++++++.+.+ ++++
T Consensus       123 ~~~~~~~~~ii~~~~~~HG~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~l~~-~~aa  187 (403)
T PRK05093        123 DRHGPEKTEIIAFHNSFHGRTLF--------TVSVGGQPKYSDGFGPKPADITHVP------FNDLAAVKAVIDD-HTCA  187 (403)
T ss_pred             hcCCCCCCeEEEEcCCcCCchhh--------hHhhcCChhhhhcCCCCCCCcEEeC------CCCHHHHHHHhcC-CeEE
Confidence                1235677766543 33221        0011110     00     111111      2388999998875 7889


Q ss_pred             EEEcCCCCC-CCC--C---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC---C-cccEEEeCCCccc-CCCCCce
Q 013217          173 IIAGASAYP-RDF--D---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K-YCDVVTTTTHKSL-RGPRGGM  241 (447)
Q Consensus       173 ii~~~~~~~-~~~--~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~---~-~~Di~~~s~~K~l-~Gp~gG~  241 (447)
                      |++.+.+.. +..  +   +++|.++|++||+++|+|++|. |+...+.. .+.   . ..|+.  |++|++ +|.|.|+
T Consensus       188 iiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~g~~g~~-~~~~~~~~~pdi~--s~sK~l~~G~rig~  263 (403)
T PRK05093        188 VVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQT-GMGRTGDL-FAYMHYGVTPDIL--TSAKALGGGFPIGA  263 (403)
T ss_pred             EEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCCCccc-hhhhhcCCCCCEE--EecccccCCcceEE
Confidence            888843322 222  2   7899999999999999999975 65444421 111   1 24655  567998 4677899


Q ss_pred             EEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCc--EeeeCC
Q 013217          242 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGY--KLVSGG  319 (447)
Q Consensus       242 i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~--~~~~~~  319 (447)
                      ++.++      ++.+.+.........++ +....++...+++.+..+   ++.+++.++.+.+.+.|++.+.  .+....
T Consensus       264 vv~~~------~i~~~l~~~~~~~t~~~-~~~~~~aa~a~L~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  333 (403)
T PRK05093        264 MLTTA------EIASHFKVGTHGSTYGG-NPLACAVAEAVFDIINTP---EVLEGVKARRQRFVDGLQKINQKYGVFSEI  333 (403)
T ss_pred             EEEcH------HHHhhcCCCCCCCCCCC-CHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHhhCCCeEeE
Confidence            99988      77777754333233333 344444445567665432   3457778888889988887432  111110


Q ss_pred             -CCCeeEEecCCCCC-CCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          320 -SDNHLVLVDLRPMG-IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       320 -~~~~~~~v~~~~~~-~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                       ....++++.+.+.. .+..++...|.+.||.+..    .     ..+.+|++++..++    +++++++.+.|.+++..
T Consensus       334 ~~~G~~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~----~-----g~~~lRl~~~~~~~----~~~i~~~~~~l~~~l~~  400 (403)
T PRK05093        334 RGMGLLIGAELKPQYKGRARDFLNAAAEEGVMVLV----A-----GPDVLRFAPSLVIE----EADIDEGLARFEKAVAK  400 (403)
T ss_pred             eeCceEEEEEecCcchhHHHHHHHHHHHCCeEEec----C-----CCCEEEEeCCCCCC----HHHHHHHHHHHHHHHHH
Confidence             11344556554321 1345677778888999852    1     13589998877666    99999999999988753

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.71  E-value=2.3e-16  Score=137.15  Aligned_cols=163  Identities=25%  Similarity=0.290  Sum_probs=114.0

Q ss_pred             HHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC
Q 013217           71 CQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD  150 (447)
Q Consensus        71 ~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  150 (447)
                      ++++++++|+.+.+.  +.+ .++|+.|+..++.++.++|++|++.++.|+++..  .     .....|.  +++.++.+
T Consensus         5 ~~~~l~~~~~~~~~~--~~~-~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~--~-----~~~~~g~--~~~~v~~~   72 (170)
T cd01494           5 LEEKLARLLQPGNDK--AVF-VPSGTGANEAALLALLGPGDEVIVDANGHGSRYW--V-----AAELAGA--KPVPVPVD   72 (170)
T ss_pred             HHHHHHHHcCCCCCc--EEE-eCCcHHHHHHHHHHhCCCCCEEEEeecccceehh--h-----HHHhcCC--EEEEeccC
Confidence            346899999644332  233 3577899999999999999999999998887752  0     1233444  45555554


Q ss_pred             CCCC-CCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEE
Q 013217          151 ESTG-LVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVT  227 (447)
Q Consensus       151 ~~~~-~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~  227 (447)
                      ..+. ..|.+.+++.....+|++++++.+++++  ..|+++|.++|+++|+++++|++|..+.........+..++|+++
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d~~~  152 (170)
T cd01494          73 DAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVT  152 (170)
T ss_pred             CCCccchhhhhhhhccccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccccccccCCEEE
Confidence            3222 2333356555544488999888666554  668899999999999999999998766554321112223689999


Q ss_pred             eCCCcccCCCCCceEEee
Q 013217          228 TTTHKSLRGPRGGMIFFK  245 (447)
Q Consensus       228 ~s~~K~l~Gp~gG~i~~~  245 (447)
                      .|+||+|++|++|+++++
T Consensus       153 ~s~~K~~~~~~~G~l~~~  170 (170)
T cd01494         153 FSLHKNLGGEGGGVVIVK  170 (170)
T ss_pred             EEcccccCCCceEEEEeC
Confidence            999999988877999875

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=99.71  E-value=6.4e-15  Score=137.28  Aligned_cols=281  Identities=17%  Similarity=0.182  Sum_probs=178.9

Q ss_pred             eecCCc-HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhh
Q 013217           90 VQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAIL  167 (447)
Q Consensus        90 v~~~sG-s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~  167 (447)
                      +.++.| |.||.++...|..|||.-|++.|.|+|.-.        .+++.. +++++|+.++. ++++++.+++|++..+
T Consensus       149 ~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdr--------dl~~rT-gveivpv~c~Ss~~f~itv~alE~A~~~  219 (471)
T KOG0256|consen  149 VVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDR--------DLRWRT-GVEIVPVHCSSSNGFQITVEALEAALNQ  219 (471)
T ss_pred             eEEecccchhhHHHHHHhcCCCceeeecCCCCCcccc--------cceecc-CceEEEEEeecCCCccccHHHHHHHHHH
Confidence            334555 499999999999999999999999888632        222222 35777877765 4579999999987753


Q ss_pred             -----hCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC----------CcccEEE
Q 013217          168 -----FRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF----------KYCDVVT  227 (447)
Q Consensus       168 -----~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~----------~~~Di~~  227 (447)
                           .+.|.|++..|+||.  ..+   +..+..+|.++++.+|+|+.+ +|-++......++          +..--++
T Consensus       220 A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIy-a~sVF~~~~F~Sv~ev~~~~~~~~~rvHiv  298 (471)
T KOG0256|consen  220 ARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIY-AGSVFDKSEFRSVLEVRKDPHLDPDRVHIV  298 (471)
T ss_pred             HHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhh-cccccCccCceEHHHHhhccccCCCcEEEE
Confidence                 256888888777774  444   456667788999999999995 5655443211111          0112467


Q ss_pred             eCCCccc--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHH
Q 013217          228 TTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA  305 (447)
Q Consensus       228 ~s~~K~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~  305 (447)
                      .|++|-|  +|.|-|.|+..++     +......+...-+..++...+.++++- +=+...+.-..+..+|+..+-+++.
T Consensus       299 yslSKD~GlpGfRvGviYS~ne-----~VvsaA~kmssf~~vSs~tQ~~la~LL-SD~~f~~~yl~en~~Rl~~rh~~~~  372 (471)
T KOG0256|consen  299 YSLSKDFGLPGFRVGVIYSNNE-----DVVSAATKMSSFGLVSSQTQYLLASLL-SDEEFTREYLRENNKRLRIRHRYIV  372 (471)
T ss_pred             EEeccccCCCceEEEEEEecCh-----HHHHHHHHHhhccCCcHHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899975  5777799999886     666665554322222111112222221 2222222222566677788888899


Q ss_pred             HHHHHCCcEeeeCCCCCeeEEecCCCC--CCC--H-HH-HHHHHhhcCeEEccCCCCCCC-CCCCCCeEEEecCccccCC
Q 013217          306 SRLVELGYKLVSGGSDNHLVLVDLRPM--GID--G-AR-VEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRG  378 (447)
Q Consensus       306 ~~L~~~g~~~~~~~~~~~~~~v~~~~~--~~~--~-~~-~~~~L~~~gI~v~~~~~p~~~-~~~~~~~iRig~~~~~~~g  378 (447)
                      +.|++.|++++..+ ..-+.|+|++..  ..+  + .+ +.+.+.+.++.+++    |.. .-..++.+|+++..     
T Consensus       373 ~gLk~lgI~cl~s~-AGlF~wvDlr~lL~s~tfe~El~Lw~~i~~~vklnlSp----G~s~~C~EpGWFRvcFAn-----  442 (471)
T KOG0256|consen  373 EGLKALGIPCLKSN-AGLFCWVDLRKLLTSLTFEGELELWERILDNVKLNLSP----GSSCHCHEPGWFRVCFAN-----  442 (471)
T ss_pred             hhHHhcCCceeecC-CeeEEEEEhHHhcCcCChHHHHHHHHHHHHhhccccCC----CCcceecCCCeEEEEecc-----
Confidence            99999999998753 356678998652  111  1 12 33445556887754    433 22357899999754     


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q 013217          379 FSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       379 ~~~~di~~l~~~i~~~l~  396 (447)
                      |.++.++...+.|+..+.
T Consensus       443 ~~~~t~~~am~Ri~~~~~  460 (471)
T KOG0256|consen  443 MSEETLEVAMRRLKQFLD  460 (471)
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            336666666777766665

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.71  E-value=3.4e-15  Score=145.70  Aligned_cols=241  Identities=20%  Similarity=0.149  Sum_probs=156.2

Q ss_pred             hhHHHHHHHHHHHHHHHHcCCCCCcc----ceeeecCCcHHHHHHHHHHhcC--------C-----CC-EEEEecCCCCc
Q 013217           61 NEYIDELETLCQKRALAAFNLDENKW----GVNVQPLSGSPANFEVYTAILK--------P-----HD-RIMGLDLPHGG  122 (447)
Q Consensus        61 ~~~~~~le~~~~~~~~~~~g~~~~~~----~~~v~~~sGs~a~~~~~~al~~--------p-----gd-~Vl~~~~~~~~  122 (447)
                      .+...++|..+..++++++|.+.+..    ..-+.+++||++|+.++.+..+        .     +. .|++.+-.|.+
T Consensus        74 ~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S  153 (373)
T PF00282_consen   74 SPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYS  153 (373)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-TH
T ss_pred             ccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccH
Confidence            45678899999999999999983211    1234456677898877655421        1     23 34444333332


Q ss_pred             ccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh--C---CcEEEEc-CCCCCC-CCChHHHHHHHHH
Q 013217          123 HLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--R---PKLIIAG-ASAYPR-DFDYPRMRQIADA  195 (447)
Q Consensus       123 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~--~---~klii~~-~~~~~~-~~~~~~i~~ia~~  195 (447)
                      .        .+.+.+.|.+  ++.++++ +++.+|+++|++++.+.  +   |-+|+.+ ++.+.+ ..|+++|.++|++
T Consensus       154 ~--------~Kaa~~lGlg--~~~I~~~-~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~  222 (373)
T PF00282_consen  154 I--------EKAARILGLG--VRKIPTD-EDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEK  222 (373)
T ss_dssp             H--------HHHHHHTTSE--EEEE-BB-TTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHH
T ss_pred             H--------HHhcceeeeE--EEEecCC-cchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccc
Confidence            2        2456677876  4455576 46899999999988653  2   3345544 333333 7899999999999


Q ss_pred             hCCEEEEehhhhccccccccC-C--CCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHH-Hhhh-c--c-----
Q 013217          196 VGALLMMDMAHISGLVAASVV-A--DPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES-AINN-A--V-----  262 (447)
Q Consensus       196 ~g~~livD~a~~~g~~~~~~~-~--~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~-~i~~-~--~-----  262 (447)
                      +++|++||+|+.......... +  ..++.+|.++.++|||+..|.+ |+++++++     .... .... .  .     
T Consensus       223 ~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~-----~~l~~~~~~~~~Yl~~~~~  297 (373)
T PF00282_consen  223 YNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRDK-----SDLRDAFSINADYLGNDDR  297 (373)
T ss_dssp             CT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESSG-----GGHHGGGEEEETCTT-S-S
T ss_pred             cceeeeecccccccccccccccccccccccccccccchhhhhcCCccceeEEeecc-----cchHHHhccChhhhccccc
Confidence            999999999964323322221 1  2234799999999999999988 99999885     2222 1100 0  0     


Q ss_pred             ---------CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEeeeC
Q 013217          263 ---------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSG  318 (447)
Q Consensus       263 ---------~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~  318 (447)
                               ..+.+++- -.....++..++....+++.+++++..+.+++|++.|++ .+++++.+
T Consensus       298 ~~~~~~~~~~~tl~~SR-~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~  362 (373)
T PF00282_consen  298 ESDESYDYGDYTLQGSR-RFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNE  362 (373)
T ss_dssp             SS-GGGCEEEGSSSSSG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESST
T ss_pred             ccccccccccccccccc-cchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence                     01123343 344567788888888889999999999999999999998 45888764

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=99.70  E-value=1.2e-15  Score=140.74  Aligned_cols=184  Identities=19%  Similarity=0.149  Sum_probs=131.2

Q ss_pred             eeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHH
Q 013217           23 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV  102 (447)
Q Consensus        23 i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~  102 (447)
                      ..+..+..|.-....++... +.-+ ..||...|.  .++..+.+|    +|++.+=|--.     -+.+.||..|...+
T Consensus        27 ~PIyqtTsy~F~d~~haa~l-F~l~-~~G~iYsRi--~NPT~~vlE----~RiAaLEGG~a-----a~a~aSG~AA~~~a   93 (426)
T COG2873          27 VPIYQTTSYVFDDTDHAAAL-FGLK-EPGNIYTRI--MNPTTDVLE----ERIAALEGGVA-----ALAVASGQAAITYA   93 (426)
T ss_pred             cceeeeeeeecCCHHHHHHH-hCCC-cCCceeeec--cCchHHHHH----HHHHHhhcchh-----hhhhccchHHHHHH
Confidence            44455555554333333322 2222 246666654  577889998    57777766443     24458999999999


Q ss_pred             HHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC
Q 013217          103 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR  182 (447)
Q Consensus       103 ~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~  182 (447)
                      +..+.++||+|+..+--|||.++.-.    ..++..|  +++..  +|    ..|++.+++++++ +||+|++..-.||.
T Consensus        94 i~~la~aGD~iVss~~LYGGT~~lf~----~tl~~~G--i~v~f--vd----~~d~~~~~~aI~~-nTkavf~EtigNP~  160 (426)
T COG2873          94 ILNLAGAGDNIVSSSKLYGGTYNLFS----HTLKRLG--IEVRF--VD----PDDPENFEAAIDE-NTKAVFAETIGNPG  160 (426)
T ss_pred             HHHhccCCCeeEeeccccCchHHHHH----HHHHhcC--cEEEE--eC----CCCHHHHHHHhCc-ccceEEEEeccCCC
Confidence            99999999999999988988753110    1122334  34445  32    2479999999998 99999998777886


Q ss_pred             --CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-cccEEEeCCCcccCCC
Q 013217          183 --DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGP  237 (447)
Q Consensus       183 --~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-~~Di~~~s~~K~l~Gp  237 (447)
                        ..|+++|.++||++|++++||.+-..+     ....|++ ++|+++.|++||++|-
T Consensus       161 ~~v~Die~ia~iAh~~gvpliVDNT~atp-----yl~rP~~hGADIVvHS~TK~igGh  213 (426)
T COG2873         161 LDVLDIEAIAEIAHRHGVPLIVDNTFATP-----YLCRPIEHGADIVVHSATKYIGGH  213 (426)
T ss_pred             ccccCHHHHHHHHHHcCCcEEEecCCCcc-----eecchhhcCCCEEEEeecccccCC
Confidence              789999999999999999999984332     3345666 6999999999999764

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.69  E-value=1.7e-14  Score=143.45  Aligned_cols=318  Identities=18%  Similarity=0.131  Sum_probs=188.8

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc----
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  107 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~----  107 (447)
                      -.|.|.+|+.+.+.+-+..   +..+.  .+...++    .++++++++.+.     ...++||++|+..++....    
T Consensus        56 ~~p~v~~A~~~~~~~~~~~---~~~~~--~~~~~~l----a~~l~~~~~~~~-----v~~~~sGseA~e~Alk~ar~~~~  121 (406)
T PRK12381         56 AHPALREALNEQASKFWHT---GNGYT--NEPVLRL----AKKLIDATFADR-----VFFCNSGAEANEAALKLARKYAH  121 (406)
T ss_pred             CCHHHHHHHHHHHhhcccc---cCccC--CHHHHHH----HHHHHhhCCCCe-----EEEcCCcHHHHHHHHHHHHHHHh
Confidence            3789999988877542111   11111  1112223    357777776542     2446899999999887642    


Q ss_pred             ----CCCCEEEEecCCCCcccCCCccccccccccccce-eE--EEecccC-CCCCCCCHHHHHHHhhhhCCcEEEEcCCC
Q 013217          108 ----KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FE--SMPYRLD-ESTGLVDYDMLEKTAILFRPKLIIAGASA  179 (447)
Q Consensus       108 ----~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~--~~~~~~~-~~~~~id~~~l~~~~~~~~~klii~~~~~  179 (447)
                          .+..+|+..+..|.|... +      .+.+.+.. +.  ..++.-+ ......|++++++.+.+ ++++|++. |.
T Consensus       122 ~~~~~~r~~ii~~~~~yHG~t~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~aaviiE-Pv  192 (406)
T PRK12381        122 DRYGSHKSGIVAFKNAFHGRTL-F------TVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALIDD-QTCAVIVE-PI  192 (406)
T ss_pred             hcCCCCCCeEEEECCCcCCcch-h------HHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhccC-CeeEEEEe-CC
Confidence                245788888766544321 0      11112210 00  0000000 00113588999998876 78888886 34


Q ss_pred             CCC--C-----CChHHHHHHHHHhCCEEEEehhhhccccccccCCC--CCC-cccEEEeCCCccc-CCCCCceEEeecCC
Q 013217          180 YPR--D-----FDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFK-YCDVVTTTTHKSL-RGPRGGMIFFKKDP  248 (447)
Q Consensus       180 ~~~--~-----~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~--~~~-~~Di~~~s~~K~l-~Gp~gG~i~~~~~~  248 (447)
                      ++.  .     ..+++|.++|++||+++|+|++| .|+...+....  ... ..|++  +++|.+ +|.+.|++++++  
T Consensus       193 ~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~-tG~gr~G~~~~~~~~~v~pDi~--t~sK~l~gG~~ig~~~~~~--  267 (406)
T PRK12381        193 QGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQ-TGVGRTGELYAYMHYGVTPDVL--TTAKALGGGFPIGAMLTTE--  267 (406)
T ss_pred             cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchh-hCCCCCcchhhhHhhCCCCCEE--EehhhhhCCCceEEEEEcH--
Confidence            432  2     24689999999999999999998 66543332110  011 24665  566998 566778888887  


Q ss_pred             cchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCC--cEeeeCCC-CCeeE
Q 013217          249 VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG--YKLVSGGS-DNHLV  325 (447)
Q Consensus       249 ~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~~~~~~~-~~~~~  325 (447)
                          ++.+.+.......+.+ .+....++..++++.+..+   +..+++.++.+++.+.|++.+  +.++.... ...++
T Consensus       268 ----~~~~~~~~~~~~~t~~-~~pl~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~Gl~~  339 (406)
T PRK12381        268 ----KCASVMTVGTHGTTYG-GNPLASAVAGKVLELINTP---EMLNGVKQRHDWFVERLNTINARYGLFSEIRGLGLLI  339 (406)
T ss_pred             ----HHHhhcCCCCCCCCCC-CCHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHhhCCCEEEEecCeEEE
Confidence                7777765533332232 3444455555566665432   356777788888888887743  22222111 12334


Q ss_pred             EecCCCCC-CCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          326 LVDLRPMG-IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       326 ~v~~~~~~-~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      ++.+.+.. .....+.+.|.++||.+...         .+..+|++++...+    ++|++++.+.|.+++...
T Consensus       340 ~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~---------g~~~lRl~p~~~~t----~~~i~~~~~~l~~~l~~~  400 (406)
T PRK12381        340 GCVLNAEYAGKAKQISQEAAKAGVMVLIA---------GPNVVRFAPALNIS----EEEITTGLDRFARACERF  400 (406)
T ss_pred             EEEecCchhhHHHHHHHHHHHCCcEEeeC---------CCCEEEEeCCccCC----HHHHHHHHHHHHHHHHHH
Confidence            45443211 12456778888999998421         13489999887677    999999999999988643

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.67  E-value=5.4e-17  Score=152.26  Aligned_cols=252  Identities=21%  Similarity=0.228  Sum_probs=159.1

Q ss_pred             cCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh
Q 013217           27 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI  106 (447)
Q Consensus        27 ~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al  106 (447)
                      .|.| .+|+++++|.....     |..   -|++.++...+|    ++++++||.+..     +.+.|||.||..+++++
T Consensus         3 ~SD~-~~~~m~~a~~~a~~-----gd~---~Yg~D~~~~~l~----~~i~~l~g~e~a-----~f~~sGT~An~~al~~~   64 (290)
T PF01212_consen    3 RSDT-PTPAMLEAMAAANV-----GDD---AYGEDPTTARLE----ERIAELFGKEAA-----LFVPSGTMANQLALRAH   64 (290)
T ss_dssp             S-SS-S-HHEEHHHHHTTS-----B-C---CTTSSHHHHHHH----HHHHHHHTSSEE-----EEESSHHHHHHHHHHHH
T ss_pred             CccC-CCHHHHHHHHcccc-----CCc---ccCCChhHHHHH----HHHHHHcCCCEE-----EEeCCCChHHHHHHHHH
Confidence            3666 78999999954322     222   267778888888    688899999853     34589999999999999


Q ss_pred             cCCCCEEEEecCCCCcccCCCcccccccc-ccccceeEEEecccCCCCCCCCHHHHHHHhhh-----hCCcEEEEcCCCC
Q 013217          107 LKPHDRIMGLDLPHGGHLSHGFMTPKRRV-SGTSIYFESMPYRLDESTGLVDYDMLEKTAIL-----FRPKLIIAGASAY  180 (447)
Q Consensus       107 ~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~-----~~~klii~~~~~~  180 (447)
                      ++|++.|++....|--....+      .+ .+.|.  ++++++.+ +++.+|+++|++.+..     .+|++|.++.+++
T Consensus        65 ~~~~~~vi~~~~aHi~~~E~g------a~~~~~G~--~~~~l~~~-~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~  135 (290)
T PF01212_consen   65 LRPGESVICADTAHIHFDETG------AIEELSGA--KLIPLPSD-DDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTE  135 (290)
T ss_dssp             HHTTEEEEEETTEHHHHSSTT------HHHHHTTC--EEEEEBEC-TGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBT
T ss_pred             HhcCCceeccccceeeeeccc------hhhHhcCc--EEEECCCc-ccCCCCHHHHHHHhhhccccCCCccEEEEEecCc
Confidence            999999998876432221211      22 34554  66665543 2389999999999977     3578999986666


Q ss_pred             C--C-CC---ChHHHHHHHHHhCCEEEEehhhhcccc-ccccCCC-CCCcccEEEeCCCcccCCCCCceEEeecCCcchh
Q 013217          181 P--R-DF---DYPRMRQIADAVGALLMMDMAHISGLV-AASVVAD-PFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGV  252 (447)
Q Consensus       181 ~--~-~~---~~~~i~~ia~~~g~~livD~a~~~g~~-~~~~~~~-~~~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~  252 (447)
                      .  + ..   ++++|.++|+++|++++.|+|...... ..+.... -..++|++++|++|.++.|-|++++.++      
T Consensus       136 ~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~~~~D~v~~~~tK~~g~~~Gavl~~~~------  209 (290)
T PF01212_consen  136 LAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGVSLAEIAAGADSVSFGGTKNGGAPGGAVLAGNK------  209 (290)
T ss_dssp             TTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHHTTSSEEEEETTSTT-SSSEEEEEESH------
T ss_pred             CCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHHHhhhCCEEEEEEEcccccccceEEEech------
Confidence            4  3 44   467888899999999999998532211 1111110 0136999999999999889899999998      


Q ss_pred             hHHHHhhhc--cCCC-C-CCCCcHHHHHH----HHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeee
Q 013217          253 ELESAINNA--VFPG-L-QGGPHNHTIGG----LAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVS  317 (447)
Q Consensus       253 ~~~~~i~~~--~~~~-~-~g~p~~~~~aa----l~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~  317 (447)
                      ++.+.....  ...+ + +.+    .+++    ...++..+ +. +.....+-.++++.|++.|+..|+.+..
T Consensus       210 ~~i~~~~~~~k~~gg~~~~~G----~~~a~~~~~~~~l~~l-~~-~~~~~~~~~~~A~~La~~l~~~~~~~~~  276 (290)
T PF01212_consen  210 EFIAKARRQRKRLGGGMRQAG----VLAAAELYQFAALRAL-EL-WLERARHANAMAKRLAAGLEALGGVLPR  276 (290)
T ss_dssp             HHHHHHHHHHHHHTHHHHHTT----HHHHHHHHHHHHHCHE-EC-SHHHHHCHHHHHHCHHHCHHEECEEEET
T ss_pred             HHHHHHHHHHHHhccCeeecc----eeeeechhhHHHHHHH-Hh-hHHHHHHHHHHHHHHHHHHHHCCCcccC
Confidence            543321111  0110 0 011    1222    11223222 22 2455677788899999999888876554

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.66  E-value=1.2e-13  Score=136.10  Aligned_cols=307  Identities=15%  Similarity=0.118  Sum_probs=176.5

Q ss_pred             CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh--cCCC
Q 013217           33 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKPH  110 (447)
Q Consensus        33 ~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al--~~pg  110 (447)
                      .|++++++...+...+  +++. .+      ...++    ..+++.+...++.  ..+.+.||++||..++...  ...+
T Consensus        46 ~p~v~~a~~~~~~~~~--~~~~-~~------~~~~~----~~la~~l~~~~~~--~~~~~~SGseA~~~Al~~ar~~~~~  110 (375)
T PRK04260         46 HPQVQQALQKQAGLIW--HSPN-LY------LNSLQ----EEVAQKLIGDKDY--LAFFCNSGAEANEAAIKIARKATGK  110 (375)
T ss_pred             CHHHHHHHHHHHHhcC--cccC-cc------CCHHH----HHHHHHHhcCcCC--EEEEcCccHHHHHHHHHHHHHhcCC
Confidence            6889999988775421  2221 11      12233    2333333222221  1244689999999887765  2456


Q ss_pred             CEEEEecCCCCcccCCCccccccccccccc-----eeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCC-C-C
Q 013217          111 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-----YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP-R-D  183 (447)
Q Consensus       111 d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~-~-~  183 (447)
                      ++|++.+..+.|.....       +...+.     .+.. .++..+.....|++++++.+.+ ++.+|++.+.+++ + .
T Consensus       111 ~~vv~~~~~yHg~~~~~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~dl~~l~~~l~~-~~a~vi~e~v~~~~G~~  181 (375)
T PRK04260        111 QEIITFQNSFHGRTFGS-------MSATGQDKIKDGFGD-GVPHFSYAIFNDLNSVKALVNK-NTAAVMLELVQGESGVL  181 (375)
T ss_pred             CeEEEECCCcCcccHHH-------HhccCCcccCCCCCC-CCCCeEEeCCCCHHHHHHhcCC-CeEEEEECCeECCCCCc
Confidence            78888776643321111       111111     0000 0000000012489999988865 7778888744433 2 2


Q ss_pred             CC----hHHHHHHHHHhCCEEEEehhhhccccccccC-CC-CCC-cccEEEeCCCcccC-CCCCceEEeecCCcchhhHH
Q 013217          184 FD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-AD-PFK-YCDVVTTTTHKSLR-GPRGGMIFFKKDPVLGVELE  255 (447)
Q Consensus       184 ~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~~-~~~-~~Di~~~s~~K~l~-Gp~gG~i~~~~~~~~~~~~~  255 (447)
                      .+    ++++.++|+++|+++++|++| .|+...+.. .. -.. ..|++  |++|.|+ |.+.|++++++      ++.
T Consensus       182 ~~~~~~l~~~~~l~~~~~~~~i~De~~-~g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~G~~ig~~~~~~------~~~  252 (375)
T PRK04260        182 PADKDFVKALADYCQETGILLIVDEVQ-TGMGRTGKLYAFEHYGIEPDIF--TLAKGLANGVPVGAMLAKS------SLG  252 (375)
T ss_pred             CCCHHHHHHHHHHHHHcCCEEEEechh-hCCCcccchhhhHhhCCCCCEE--EecccccCCcceEEEEEcH------HHH
Confidence            22    799999999999999999998 465433311 10 001 24665  5779985 56789999987      676


Q ss_pred             HHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH----CC-cEeeeCCCCCeeEEecCC
Q 013217          256 SAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----LG-YKLVSGGSDNHLVLVDLR  330 (447)
Q Consensus       256 ~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g-~~~~~~~~~~~~~~v~~~  330 (447)
                      +.+.........+ .+....++...+++.+..+   ++.+++.++.+.+++.|.+    .+ +..+.+  ...++++.+.
T Consensus       253 ~~~~~~~~~~t~~-~~~~~~~aa~a~l~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~g~~~~~~~~  326 (375)
T PRK04260        253 GAFGYGSHGSTFG-GNKLSMAAASATLDIMLTA---GFLEQALENGNYLQEQLQKALQDKETVTTVRG--LGYMIGIETT  326 (375)
T ss_pred             hhcCCCCCCCCCC-cCHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHhhCCCeeEEec--cceEEEEEec
Confidence            6665432222222 2334445555566655433   3455556666666665544    22 222222  2445566653


Q ss_pred             CCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          331 PMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       331 ~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                      .   +..++.+.|.++||.+.    |.     ..+.+|++++...+    ++|++++++.|+++
T Consensus       327 ~---~~~~~~~~l~~~Gi~v~----~~-----~~~~lR~~~~~~~t----~~~i~~~l~~l~~~  374 (375)
T PRK04260        327 A---DLSQLVEAARDKGLIVL----TA-----GTNVIRLLPPLTLT----KEEIEQGIAILSEV  374 (375)
T ss_pred             C---cHHHHHHHHHhCCCEEe----cC-----CCCEEEEcCCCccC----HHHHHHHHHHHHHh
Confidence            2   46778899999999984    22     23579999887766    99999999998765

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.64  E-value=3e-13  Score=133.68  Aligned_cols=313  Identities=16%  Similarity=0.129  Sum_probs=177.1

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc----
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  107 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~----  107 (447)
                      ..|.|.+++.+.+.+- ..++.  .++      .+.+....+++.+..+.+.     .+.++||++|+.+++....    
T Consensus        53 ~~p~v~~a~~~q~~~~-~~~~~--~~~------~~~~~~la~~l~~~~~~~~-----v~f~~SGseA~e~Aik~ar~~~~  118 (395)
T PRK03715         53 CNPGMVEALAAQAEKL-INPSP--AFY------NEPMAKLAGLLTQHSCFDK-----VFFANSGAEANEGAIKLARKWGR  118 (395)
T ss_pred             CCHHHHHHHHHHHHhc-ccccc--ccc------CHHHHHHHHHHhhccCCCE-----EEEeCCcHHHHHHHHHHHHHHhh
Confidence            3799999988776542 22221  111      1233333345555444332     3446899999999887663    


Q ss_pred             --CCC-CEEEEecCCCCcccCCCccccccccccccce-eEEEecccCC---CCCCCCHHHHHHHhhhhCCcEEEEcCCCC
Q 013217          108 --KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDE---STGLVDYDMLEKTAILFRPKLIIAGASAY  180 (447)
Q Consensus       108 --~pg-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~---~~~~id~~~l~~~~~~~~~klii~~~~~~  180 (447)
                        ++| .+|++.+..|.|....       .+..++.. ++....+..+   .....|++++++.+.+ ++.+|++.+...
T Consensus       119 ~~~~~r~~ii~~~~~yHG~t~~-------~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~aavi~Epv~~  190 (395)
T PRK03715        119 KHKNGAYEIITFDHSFHGRTLA-------TMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLITD-KTVAVMLEPVQG  190 (395)
T ss_pred             ccCCCCcEEEEECCCcCCChHH-------HHhhcCCcccccCCCCCCCCceeeCCchHHHHHHHcCC-CceEEEEeCCcC
Confidence              233 5677776554332110       11222211 0000000000   0012578999988875 788888874322


Q ss_pred             -CC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccCC-CCCceEEeecCCcc
Q 013217          181 -PR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRG-PRGGMIFFKKDPVL  250 (447)
Q Consensus       181 -~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~G-p~gG~i~~~~~~~~  250 (447)
                       .+ ..+    +++|+++|++||+++|+|++|. |+-..|.. . .-++ ..|+++++  |.|+| .+.|.+++++    
T Consensus       191 ~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~t-G~GRtG~~~a~~~~gv~PDi~t~g--K~lg~G~p~~av~~~~----  263 (395)
T PRK03715        191 EGGVIPATREFMQQLRALTKQHGLLLIVDEVQT-GCGRTGTLFAYELSGIEPDIMTLG--KGIGGGVPLAALLAKA----  263 (395)
T ss_pred             CCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCCCcchhhHhhcCCCCceeeeh--hhhhCCcceEEEEEcc----
Confidence             22 334    8999999999999999999985 64323221 0 0011 25887665  99965 3456677776    


Q ss_pred             hhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC----CcEeeeCCCCCeeEE
Q 013217          251 GVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL----GYKLVSGGSDNHLVL  326 (447)
Q Consensus       251 ~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~  326 (447)
                        ++.. +......++++ .++..+++..++++.+.++   ++.++..+..++|.+.|++.    ++.-+.+  ...+.-
T Consensus       264 --~i~~-~~~~~~~~T~~-g~pl~~aaala~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~i~~vrG--~Glm~~  334 (395)
T PRK03715        264 --EVAV-FEAGDQGGTYN-GNPLMTAVGVAVISQLLAP---GFLEGVRARGEYLKEKLLELSEERGLEGERG--EGLLRA  334 (395)
T ss_pred             --cccc-ccCCCcCCCCC-CCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHhhcCCcCeEEc--ceeEEE
Confidence              4432 11111112222 2444555555577766543   34677778888888888752    4332222  233344


Q ss_pred             ecCCCCCCCHHHHHHHHhhc---CeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          327 VDLRPMGIDGARVEKILDMA---SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       327 v~~~~~~~~~~~~~~~L~~~---gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      +.+...  ....+.+.+.+.   ||.+...         .+..||+.++...|    ++|++++.++|++++..
T Consensus       335 i~l~~~--~~~~~~~~~~~~~~~Gi~~~~~---------~~~~lR~~p~l~~t----~~ei~~~~~~l~~~l~~  393 (395)
T PRK03715        335 LLLGKD--IGPQIVEKARDMQPDGLLLNAP---------RPNLLRFMPALNVT----TEEIDQMIAMLRSVLDK  393 (395)
T ss_pred             EEecCc--hHHHHHHHHHhccCCCEEEeec---------CCCEEEEeCCcccC----HHHHHHHHHHHHHHHHh
Confidence            454321  234455555455   9998531         12479999998877    99999999999998864

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.64  E-value=7.6e-15  Score=139.42  Aligned_cols=214  Identities=21%  Similarity=0.164  Sum_probs=146.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccc
Q 013217           59 GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGT  138 (447)
Q Consensus        59 ~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~  138 (447)
                      .+++..+.+|    ..++++-|++.     .+..+||..|...++..++++||+|+..+..|+|.....  .  ......
T Consensus        74 ~~nPt~~~le----~~iaal~ga~~-----~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l--~--~~~~~~  140 (409)
T KOG0053|consen   74 SGNPTRDVLE----SGIAALEGAAH-----ALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRIL--R--KFLPKF  140 (409)
T ss_pred             CCCCchHHHH----HHHHHHhCCce-----EEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHH--H--HHHHHh
Confidence            3577788888    57888999886     244699999999999999999999999998888863211  0  001112


Q ss_pred             cceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccC
Q 013217          139 SIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV  216 (447)
Q Consensus       139 g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~  216 (447)
                      |.  ....++      .-|++.+++.+++ ++++|++.+|.||.  ..|+++|+++|+++|+++++|.+-..+     ..
T Consensus       141 gi--e~~~vd------~~~~~~~~~~i~~-~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p-----~~  206 (409)
T KOG0053|consen  141 GG--EGDFVD------VDDLKKILKAIKE-NTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSP-----YN  206 (409)
T ss_pred             Cc--eeeeec------hhhHHHHHHhhcc-CceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcc-----cc
Confidence            21  222211      2356677777777 89999999999997  789999999999999999999984322     22


Q ss_pred             CCCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHH
Q 013217          217 ADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKV  292 (447)
Q Consensus       217 ~~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~  292 (447)
                      ..|++ +|||++.|..|+++|..   +|.++.+.+     ++.+++..... ...+.++...   ....++-+.+  +.-
T Consensus       207 ~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~-----~~~~~l~~~~~-~lg~~~~p~~---~~ll~Rglkt--l~l  275 (409)
T KOG0053|consen  207 QDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSE-----ELASRLKFLQE-DLGWCEDPFD---LFLLSRGLKT--LHL  275 (409)
T ss_pred             cChhhcCCCEEEEeeeeeecCCcceeeeEEecCcH-----HHHHHHHHHHH-HhcCCCCHHH---HHHHhcCcch--hhh
Confidence            34555 59999999999998865   488888743     67776654331 1122333322   1112222222  233


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 013217          293 YQNKVVSNCRALASRLVE  310 (447)
Q Consensus       293 ~~~~~~~~~~~l~~~L~~  310 (447)
                      ++++..+|+..+++.|.+
T Consensus       276 Ri~~~~ena~~~A~~Le~  293 (409)
T KOG0053|consen  276 RINKHSENALKIALLLEA  293 (409)
T ss_pred             hHHHHHHHHHHHHHHhhh
Confidence            567778888889999877

>PLN02624 ornithine-delta-aminotransferase

Probab=99.63  E-value=3.7e-13  Score=135.97  Aligned_cols=317  Identities=17%  Similarity=0.139  Sum_probs=176.5

Q ss_pred             CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcC----
Q 013217           33 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK----  108 (447)
Q Consensus        33 ~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~----  108 (447)
                      .|.|.+++.+.+.+ +..+.  .++.  .+...+++    ++++++++.+.     .+..+||++|+..++.....    
T Consensus        93 ~p~v~~ai~~ql~~-~~~~~--~~~~--~~~~~~la----~~L~~~~~~~~-----~~f~~SGseA~e~AlklAr~~~~~  158 (474)
T PLN02624         93 HPKIIKALTEQAEK-LTLSS--RAFY--NDKFPEFA----EYLTSMFGYDM-----VLPMNTGAEGVETAIKLARKWGYE  158 (474)
T ss_pred             CHHHHHHHHHHHHh-cCCcc--cccC--CHHHHHHH----HHHHhhcCCCe-----EEEeCChHHHHHHHHHHHHHHHHh
Confidence            79999999887764 22222  1222  12222333    56778887653     23459999999988863321    


Q ss_pred             ----C-CC-EEEEecCCCCcccCCCccccccccccccceeEEEec-ccCCCC---CCCCHHHHHHHhhhh--CCcEEEEc
Q 013217          109 ----P-HD-RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY-RLDEST---GLVDYDMLEKTAILF--RPKLIIAG  176 (447)
Q Consensus       109 ----p-gd-~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~---~~id~~~l~~~~~~~--~~klii~~  176 (447)
                          + +. +|+...-.|     |+....  .+...+.......+ +..++.   ...|++.+++.++..  ++.+|++.
T Consensus       159 ~~g~~~~~~~ii~~~~~y-----HG~t~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~iaaiiiE  231 (474)
T PLN02624        159 KKGIPKNEAIIVSCCGCF-----HGRTLA--AISMSCDNEATRGFGPLLPGHLKVDFGDLDALEKIFEEDGDRIAAFLFE  231 (474)
T ss_pred             hcCCCCCCcEEEEECCCc-----CCCCHH--HhhcCCCccccccCCCCCCCceEeCCCCHHHHHHHHHhCCCCEEEEEEC
Confidence                2 33 455554332     221110  11111110000000 000000   013789999888642  46678887


Q ss_pred             CCCCCC--CCC----hHHHHHHHHHhCCEEEEehhhhcccccccc-CCCCC-C-cccEEEeCCCcccCC--CCCceEEee
Q 013217          177 ASAYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASV-VADPF-K-YCDVVTTTTHKSLRG--PRGGMIFFK  245 (447)
Q Consensus       177 ~~~~~~--~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~~~~-~-~~Di~~~s~~K~l~G--p~gG~i~~~  245 (447)
                      +..+++  ..+    +++|.++|++||+++|+|++|. |+...+. ..... . ..|++++|  |.++|  .+.|+++.+
T Consensus       232 pv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~t-G~GrtG~~~a~~~~~i~pDiv~ls--K~lggG~~pigav~~~  308 (474)
T PLN02624        232 PIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQT-GLARTGKMLACDWEEVRPDVVILG--KALGGGVIPVSAVLAD  308 (474)
T ss_pred             CccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CcCcCcchhhHHhcCCCCCEEEec--ccccCCCCcceeeeec
Confidence            554443  445    8999999999999999999984 5432221 11000 1 25788864  98864  466888887


Q ss_pred             cCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCC------cEeeeCC
Q 013217          246 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG------YKLVSGG  319 (447)
Q Consensus       246 ~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g------~~~~~~~  319 (447)
                      +      ++.+.+.......+.+ .+....++..++++.+.+.+   ..++..+..+.|++.|.+..      +..+.+ 
T Consensus       309 ~------~i~~~~~~~~~~~T~~-g~pl~~aaa~aaLe~l~~~~---l~~~~~~~~~~l~~~L~~l~~~~~~~i~~vrg-  377 (474)
T PLN02624        309 K------DVMLCIKPGEHGSTFG-GNPLASAVAMAALQVVQDEK---LAERSAKLGQELRDQLQKIQKQFPKLIKEVRG-  377 (474)
T ss_pred             H------HHHhHhccCCcCCCCC-CCHHHHHHHHHHHHHHHhch---HHHHHHHHHHHHHHHHHHHHHhCCCceEEEEe-
Confidence            6      5655554332222223 34444555555677655433   34455555666666665521      211211 


Q ss_pred             CCCeeEEecCCCC---CCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          320 SDNHLVLVDLRPM---GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       320 ~~~~~~~v~~~~~---~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      . ..+..+.+...   .....++.+.|.++||.+..    .     ....||++++..++    ++|++++++.|++++.
T Consensus       378 ~-G~~~~i~l~~~~~~~~~a~~~~~~L~e~GV~v~p----~-----~~~~lR~~p~l~~t----~e~id~~l~~L~~~l~  443 (474)
T PLN02624        378 R-GLLNAVVLNSPKLGPVSAYDVCLKLKERGLLAKP----T-----HDTIIRLAPPLSIS----EDELQECSKALSDVLE  443 (474)
T ss_pred             e-EEEEEEEecCCCcChHHHHHHHHHHHhCCeEEec----C-----CCCEEEEECCccCC----HHHHHHHHHHHHHHHH
Confidence            1 12222333221   11245677788899999843    2     23579999887777    9999999999998876


Q ss_pred             HH
Q 013217          397 IT  398 (447)
Q Consensus       397 ~~  398 (447)
                      ..
T Consensus       444 ~~  445 (474)
T PLN02624        444 HD  445 (474)
T ss_pred             HH
Confidence            54

>PLN00144 acetylornithine transaminase

Probab=99.62  E-value=1.1e-12  Score=129.17  Aligned_cols=316  Identities=17%  Similarity=0.131  Sum_probs=178.9

Q ss_pred             CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc---
Q 013217           31 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---  107 (447)
Q Consensus        31 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~---  107 (447)
                      +-.|.|.+++.+.+...   .+.+..++  .+.  .+  ...+++.+..+.+.     ....+||++|+.+++....   
T Consensus        31 h~~p~v~~ai~~q~~~~---~~~~~~~~--~~~--~~--~la~~l~~~~~~~~-----v~f~~sGseA~e~AlklAr~~~   96 (382)
T PLN00144         31 HGDPDWVKAVAEQAGTL---AHVSNVYH--TIP--QV--ELAKRLVASSFADR-----VFFCNSGTEANEAAIKFARKYQ   96 (382)
T ss_pred             CCCHHHHHHHHHHHHhc---CCcccccc--CHH--HH--HHHHHHHhcCCCCe-----EEEeCCcHHHHHHHHHHHHHHH
Confidence            34799999988877642   11111111  111  11  22345666654432     2345899999998876431   


Q ss_pred             C------C------CCEEEEecCCCCcccCCCccccccccccccce-eEEEecccCCCC---CCCCHHHHHHHhhhhCCc
Q 013217          108 K------P------HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDEST---GLVDYDMLEKTAILFRPK  171 (447)
Q Consensus       108 ~------p------gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~---~~id~~~l~~~~~~~~~k  171 (447)
                      .      +      ..+|+...-.|.|.-. +      .....+.. ++....+..++.   ...|++++++.+...+++
T Consensus        97 ~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~-~------~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~a  169 (382)
T PLN00144         97 RVRAPDKKDPAASSATEFVSFSNSFHGRTL-G------ALALTSKEQYRTPFEPLMPGVTFVEYGNLEAARKLIQKGKTA  169 (382)
T ss_pred             hccCCCCccccccccceEEEECCCcccccH-H------HHhcCCCccccccCCCCCCCeEEeCCCCHHHHHHhcCCCCeE
Confidence            1      1      2568887765433310 0      00111100 000000000000   013789999888655788


Q ss_pred             EEEEcCCCCCC-C---CC--hHHHHHHHHHhCCEEEEehhhhccccccccC-CC-CCC-cccEEEeCCCcccC-CCCCce
Q 013217          172 LIIAGASAYPR-D---FD--YPRMRQIADAVGALLMMDMAHISGLVAASVV-AD-PFK-YCDVVTTTTHKSLR-GPRGGM  241 (447)
Q Consensus       172 lii~~~~~~~~-~---~~--~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~~-~~~-~~Di~~~s~~K~l~-Gp~gG~  241 (447)
                      +|++.+..+++ .   ..  +++|.++|++||+++|+|+++ .|+...+.. +. ... ..|++++  +|.|+ |.+.|+
T Consensus       170 avi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~-tg~gr~g~~~~~~~~~~~PDi~t~--sK~l~~G~pig~  246 (382)
T PLN00144        170 AVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQ-CGLGRTGYLWAHEAYGVEPDIMTL--AKPLAGGLPIGA  246 (382)
T ss_pred             EEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechh-hCCCccchHhhhhhcCCCCCEEEe--cccccCCcceEE
Confidence            88887544443 2   23  789999999999999999997 454333321 10 011 2575555  59984 667799


Q ss_pred             EEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH----CC-cEee
Q 013217          242 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----LG-YKLV  316 (447)
Q Consensus       242 i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g-~~~~  316 (447)
                      +++++      ++.+.+.......+.+ .+....++..+.++.+.+.++   .+++.+..+.+.+.|.+    .+ +.-+
T Consensus       247 v~~~~------~~~~~~~~~~~~~T~~-~~pl~~aaa~a~l~~i~~~~~---~~~~~~~g~~l~~~l~~~~~~~~~~~~v  316 (382)
T PLN00144        247 VLVTE------KVASAINPGDHGSTFA-GGPLVCNAALAVLDKISKPGF---LASVAKKGEYLRELLRRKLGGNPHVKEV  316 (382)
T ss_pred             EEEcH------HHHhccCCCCCCCCCC-CCHHHHHHHHHHHHHHhhchH---HHHHHHHHHHHHHHHHHHHhhCCCceee
Confidence            99987      6777665433322333 344445555556777765444   33444444444444433    22 1111


Q ss_pred             eCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          317 SGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       317 ~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      .+  ...+.|+.+.   .+...+.+.+.++||.+..    +.    ....||++++...+    ++|+++..+.|.+++.
T Consensus       317 rg--~G~~~~l~l~---~~~~~~~~~~~~~Gv~i~~----~~----~~~~lrl~p~~~~~----~~~i~~~~~~l~~~l~  379 (382)
T PLN00144        317 RG--VGLLVGIQLD---VPAGPLVDACRDSGLLVLT----AG----KGDVVRLVPPLVIS----EAELEQAVEILADCLP  379 (382)
T ss_pred             ec--CceEEEEEec---CccHHHHHHHHHCCeEEee----cC----CCCEEEEeCCCccC----HHHHHHHHHHHHHHHH
Confidence            22  2445666662   2346788888899999853    21    13589999887566    8999999999999886


Q ss_pred             H
Q 013217          397 I  397 (447)
Q Consensus       397 ~  397 (447)
                      .
T Consensus       380 ~  380 (382)
T PLN00144        380 A  380 (382)
T ss_pred             h
Confidence            3

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.62  E-value=7.3e-13  Score=132.75  Aligned_cols=314  Identities=15%  Similarity=0.068  Sum_probs=172.3

Q ss_pred             CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh--cC
Q 013217           31 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LK  108 (447)
Q Consensus        31 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al--~~  108 (447)
                      +.+|.|.+++.+.+.+..  .|     ....+...+    .++++++.+... +.   .+.++||++|+.+++...  ..
T Consensus        64 h~~p~v~~ai~~q~~~~~--~~-----~~~~~~~~~----lae~l~~~~~~~-~~---v~~~~sGseA~e~Alk~ar~~~  128 (423)
T TIGR00713        64 HAHPRVVEAVKEALERGT--SY-----GAPTEAEIL----LAKEIISRVPSV-EM---VRFVNSGTEATMSAVRLARGYT  128 (423)
T ss_pred             CCCHHHHHHHHHHHHhCC--cC-----CCCCHHHHH----HHHHHHHhCCcc-cE---EEEeCCHHHHHHHHHHHHHHhh
Confidence            458999999988776521  11     111111222    235666666533 22   234688999999887753  23


Q ss_pred             CCCEEEEecCCCCcccCCCccccccccccccce---------------eEEEecccCCCCCCCCHHHHHHHhhh--hCCc
Q 013217          109 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY---------------FESMPYRLDESTGLVDYDMLEKTAIL--FRPK  171 (447)
Q Consensus       109 pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~---------------~~~~~~~~~~~~~~id~~~l~~~~~~--~~~k  171 (447)
                      ..++|++..+.|.|......     .....+..               ...+.++      ..|+++++++++.  .+++
T Consensus       129 gr~~ii~~~~~yhG~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~i~~~~~~~a  197 (423)
T TIGR00713       129 GRDKIIKFEGCYHGHHDALL-----VKAGSGAATLGLPTSPGVPEDFAKLTLVLP------YNDLEALEEVFEEYGEEIA  197 (423)
T ss_pred             CCCEEEEEcCCCCCChhhhh-----ccccCcccccCCCCCCCCCcccccceEEeC------CCCHHHHHHHHHHcCCcEE
Confidence            56899999887665421000     00000000               0011111      1389999998874  2567


Q ss_pred             EEEEc-CCCCCC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccCC-CCCC-cccEEEeCCCcccC-CCCCceE
Q 013217          172 LIIAG-ASAYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA-DPFK-YCDVVTTTTHKSLR-GPRGGMI  242 (447)
Q Consensus       172 lii~~-~~~~~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~-~~~~-~~Di~~~s~~K~l~-Gp~gG~i  242 (447)
                      +|++. .+++++ ..+    +++|.++|++||+++|+|++| .|+....... ..+. ..|++  +++|.++ |.+.|++
T Consensus       198 avi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~-~g~r~g~~~~~~~~~~~pDi~--t~sK~l~~G~pig~v  274 (423)
T TIGR00713       198 GVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVM-TGFRVALGGAQEYFGVEPDLT--TLGKIIGGGLPVGAF  274 (423)
T ss_pred             EEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccc-cccccCcchhHHHhCCCcchh--hhhhhhcCCCceeee
Confidence            88875 444444 333    689999999999999999997 5653211100 0011 24655  5679984 5778999


Q ss_pred             EeecCCcchhhHHHHhhhc--c-CCCCCCCCcHHHHHHHHHHHHHhcChhH-HHHHHHHHHHHHHHHHHHHHCCcEeeeC
Q 013217          243 FFKKDPVLGVELESAINNA--V-FPGLQGGPHNHTIGGLAVCLKHAQSPEF-KVYQNKVVSNCRALASRLVELGYKLVSG  318 (447)
Q Consensus       243 ~~~~~~~~~~~~~~~i~~~--~-~~~~~g~p~~~~~aal~~al~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~g~~~~~~  318 (447)
                      ++++      ++.+.+...  . ...+.+ .+...+++..++++.+.+.++ +...+......+.|.+.+.+.++.....
T Consensus       275 ~~~~------~i~~~~~~~~~~~~~~T~~-~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~  347 (423)
T TIGR00713       275 GGRR------EIMERLAPEGPVYQAGTLS-GNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDTGIPHTVN  347 (423)
T ss_pred             eEHH------HHHHhhCcCCCeeeccCCC-CCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence            9988      777777531  1 112222 344445555557776654433 2222222223333444444456543211


Q ss_pred             CCCCeeEEecCCCCC---------CCH---HHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHH
Q 013217          319 GSDNHLVLVDLRPMG---------IDG---ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVA  386 (447)
Q Consensus       319 ~~~~~~~~v~~~~~~---------~~~---~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~  386 (447)
                      +.... +.+.+....         .+.   ..+.+.|.++||.+...    .     .+.+|++++  .+    ++|+++
T Consensus       348 ~~g~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----~-----~~~~~l~~~--~t----~~~i~~  411 (423)
T TIGR00713       348 RVGSM-FSLFFTEEEVTNYADAKKSDTELFAKFFHEMLDKGVFLPPS----Q-----FEACFLSAA--HT----EEDIEN  411 (423)
T ss_pred             eeccE-EEEEEecCCCCChhhhhcccHHHHHHHHHHHHHCCeEEecC----C-----ccceeeECC--CC----HHHHHH
Confidence            11222 222221110         112   24666777899998532    1     124788654  34    899999


Q ss_pred             HHHHHHHHHH
Q 013217          387 IADFIHEGVE  396 (447)
Q Consensus       387 l~~~i~~~l~  396 (447)
                      +.+.|.+++.
T Consensus       412 ~~~~l~~~l~  421 (423)
T TIGR00713       412 TIEAAEEVFA  421 (423)
T ss_pred             HHHHHHHHHh
Confidence            9999988875

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.60  E-value=6.6e-13  Score=132.79  Aligned_cols=328  Identities=17%  Similarity=0.110  Sum_probs=180.3

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc----
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  107 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~----  107 (447)
                      -.|.|.+++.+.+..- ...... .+ . +    ..+....+++.+++.-..+.   ....+||++|+.+++....    
T Consensus        59 ~~p~v~~ai~~q~~~~-~~~~~~-~~-~-~----~~~~~la~~l~~~~p~~~~~---v~f~~sGseA~e~A~klar~~~~  127 (423)
T PRK05964         59 NHPYIDQAIREQLDRL-DHVIFA-GF-T-H----EPAERLAQRLVALTPGGLDH---VFFSDSGSVAVEVALKMALQYWR  127 (423)
T ss_pred             CCHHHHHHHHHHHhhC-CCcccc-cc-C-C----HHHHHHHHHHHHhCCCCCCE---EEEeCCcHHHHHHHHHHHHHHHH
Confidence            3689999888777542 110100 01 1 1    11122335666766421121   2335899999998877432    


Q ss_pred             ---CCC-CEEEEecCCCCcccCCCcccccccc---ccccc--eeEEEecccCCCCCCCCHHHHHHHhhhh--CCcEEEEc
Q 013217          108 ---KPH-DRIMGLDLPHGGHLSHGFMTPKRRV---SGTSI--YFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAG  176 (447)
Q Consensus       108 ---~pg-d~Vl~~~~~~~~~~~~~~~~~~~~~---~~~g~--~~~~~~~~~~~~~~~id~~~l~~~~~~~--~~klii~~  176 (447)
                         ++| .+|+...-.|.|.............   .+.+.  ....++++.+ +....+++++++.+.++  ++.+|++.
T Consensus       128 ~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~l~~~l~~~~~~iaavi~E  206 (423)
T PRK05964        128 NRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPD-GYEQATLDALEALLEKHAGEIAAFIVE  206 (423)
T ss_pred             hcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcc-hhHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence               133 5788877665443110000000000   00000  1122333221 11112378888888642  34567765


Q ss_pred             C--CCCCC-CC----ChHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccCCC--CCceEEe
Q 013217          177 A--SAYPR-DF----DYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRGP--RGGMIFF  244 (447)
Q Consensus       177 ~--~~~~~-~~----~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~Gp--~gG~i~~  244 (447)
                      +  ...++ ..    .+++|.++|++||+++|+|++| .|+...+.. . ...+ ..|++++|  |+|+|+  +.|++++
T Consensus       207 p~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~-tg~gr~G~~~a~~~~~v~pDi~~~~--K~l~gG~~p~~av~~  283 (423)
T PRK05964        207 PLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIA-TGFGRTGTLFACEQAGVSPDIMCLS--KGLTGGYLPLAATLC  283 (423)
T ss_pred             cccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechh-hCCCcCcchhHHHhcCCCCCeeeee--hhhhcCcccceEEEE
Confidence            3  22222 22    3789999999999999999998 554333311 1 0011 25777654  999654  4577888


Q ss_pred             ecCCcchhhHHHHhhhc-----cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeC
Q 013217          245 KKDPVLGVELESAINNA-----VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSG  318 (447)
Q Consensus       245 ~~~~~~~~~~~~~i~~~-----~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~  318 (447)
                      ++      ++.+.+...     ...+..-+.+...+++..++++.+..++   +.+++.+..+++.+.|++. ++..+..
T Consensus       284 ~~------~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~~---~~~~~~~~g~~l~~~l~~l~~~~~i~~  354 (423)
T PRK05964        284 TA------EIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEP---VLERVAALSAGLAEGLEPFRDLPGVAD  354 (423)
T ss_pred             cH------HHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHhhccCCCeEE
Confidence            77      677766421     1111111235556666666777665443   4567777777888877663 2322221


Q ss_pred             C-CCCeeEEecCCCCC--CCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          319 G-SDNHLVLVDLRPMG--IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       319 ~-~~~~~~~v~~~~~~--~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      . ....+..+.+....  .....+.+.|.++||.+...          ...+|++++..+|    ++|++++.+++++++
T Consensus       355 vrg~Gl~~~i~l~~~~~~~~~~~l~~~l~~~Gv~v~~~----------~~~lR~~p~l~~t----~edId~~v~~l~~al  420 (423)
T PRK05964        355 VRVLGAIGAVELDRPVLERDGPALRAFALERGVLLRPL----------GNTIYLMPPYIIT----AEELDRITDAIVEVA  420 (423)
T ss_pred             eecccEEEEEEeccCcchhHHHHHHHHHHHCCeEEEec----------CCEEEEeCCcccC----HHHHHHHHHHHHHHH
Confidence            0 11233334443221  01456788888999998531          2379999998888    999999999999988


Q ss_pred             HH
Q 013217          396 EI  397 (447)
Q Consensus       396 ~~  397 (447)
                      ..
T Consensus       421 ~~  422 (423)
T PRK05964        421 DE  422 (423)
T ss_pred             hh
Confidence            63

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=99.59  E-value=2.2e-12  Score=115.75  Aligned_cols=338  Identities=17%  Similarity=0.170  Sum_probs=190.9

Q ss_pred             eeEecCCCCC-CHHHHHHHhhhhhccCCCCCCCC--cccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-HH
Q 013217           23 LELIASENFT-SRAVMEAVGSCLTNKYSEGLPGK--RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PA   98 (447)
Q Consensus        23 i~l~~~~n~~-~~~v~~a~~~~~~~~~~~g~~~~--~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a   98 (447)
                      ..|.-+-|+. -|++.++....+..--++|.-..  -.|+|.+..+.+-+.....+.+-+|++-+.  -|+..|+|| .+
T Consensus        32 ~imLggGNPa~iPem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~ygwnit~--~NIalTnGSQs~  109 (417)
T COG3977          32 AIMLGGGNPARIPEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNITA--QNIALTNGSQSA  109 (417)
T ss_pred             ceeeCCCCcccChhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCCCcc--ceeeecCCccch
Confidence            4555666654 57777776655443222221110  124455555555555557888889987432  377789999 55


Q ss_pred             HHHHHHHh---cCCCCE--EE-EecCCCCcccCCCccccccccccccceeEEEe--cccCCC---CCCCCHHHHHHHhhh
Q 013217           99 NFEVYTAI---LKPHDR--IM-GLDLPHGGHLSHGFMTPKRRVSGTSIYFESMP--YRLDES---TGLVDYDMLEKTAIL  167 (447)
Q Consensus        99 ~~~~~~al---~~pgd~--Vl-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~---~~~id~~~l~~~~~~  167 (447)
                      .+.++.-+   ...|++  |+ =..|+|-|+-..+         +.+..+....  +.+.+.   .+.+|+++|.  +.+
T Consensus       110 fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~---------l~~d~fVs~kP~iel~~~g~FKY~vDF~~l~--i~e  178 (417)
T COG3977         110 FFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAG---------LEEDLFVSAKPNIELLPAGQFKYHVDFEHLH--IGE  178 (417)
T ss_pred             HHHHHHHhcCccCCCcceeEeeccChhhccccccc---------cCccceeeccCCcccccccceeeccCHHHcc--ccc
Confidence            55554444   234552  33 3445555442211         1111111111  112221   2468999886  444


Q ss_pred             hCCcEEEEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhcc---ccccccCCCCCCcccEEEeCCCcc-cCCCC
Q 013217          168 FRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISG---LVAASVVADPFKYCDVVTTTTHKS-LRGPR  238 (447)
Q Consensus       168 ~~~klii~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g---~~~~~~~~~~~~~~Di~~~s~~K~-l~Gp~  238 (447)
                       ++.+|+++-|.||+  +.   ++.+|.++|++||+++++|.|+...   +++.+..+. +..--+.++|.+|. |+|.|
T Consensus       179 -~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~iifsd~~~~-w~~NiilC~SLSK~GLPG~R  256 (417)
T COG3977         179 -STGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSDATPL-WNENIILCMSLSKLGLPGSR  256 (417)
T ss_pred             -ccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCceeccccccc-CCCCEEEEeehhhcCCCCcc
Confidence             78999999777776  22   4678888999999999999985432   222221110 11234778999995 67888


Q ss_pred             CceEEeecCCcchhhHHHHhhhcc-----CCCCCCCCcHHHHHHHHHHHHHhcChhHH---------HHHHHHHHHHHHH
Q 013217          239 GGMIFFKKDPVLGVELESAINNAV-----FPGLQGGPHNHTIGGLAVCLKHAQSPEFK---------VYQNKVVSNCRAL  304 (447)
Q Consensus       239 gG~i~~~~~~~~~~~~~~~i~~~~-----~~~~~g~p~~~~~aal~~al~~~~~~~~~---------~~~~~~~~~~~~l  304 (447)
                      .|+++.++      ++.+.+....     .|+..|    ..+++     +.+.+.+..         -|.++.......|
T Consensus       257 ~GIiIane------~viqaitnmn~iisLap~~~G----~Aia~-----~mie~gdl~rlseqVIrPFY~~~~q~~~~~l  321 (417)
T COG3977         257 CGIIIANE------KVIQAITNMNGIISLAPGRMG----PAIAA-----EMIESGDLLRLSEQVIRPFYRNRVQTTIAIL  321 (417)
T ss_pred             eeEEEccH------HHHHHHHhccceeeecCCCcc----HHHHH-----HHhhcchHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            89999998      6777765421     232222    12222     111111111         1233333334445


Q ss_pred             HHHHHHCCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccC--CCCCCC--CCCCCCeEEEecCccccCCCC
Q 013217          305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKN--SVPGDK--SALVPGGIRIGSPAMTTRGFS  380 (447)
Q Consensus       305 ~~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~--~~p~~~--~~~~~~~iRig~~~~~~~g~~  380 (447)
                      +..|-+..+.+..+ +..-+.|+-+....++..++.+.|++.|+.+-++  ..||-.  -|....++|++..  -+    
T Consensus       322 ~~~lp~~~~~iHkp-EGAIFlWLWf~dLPItt~~LYq~LKa~Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn~~--~~----  394 (417)
T COG3977         322 RRYLPEYRCLIHKP-EGAIFLWLWFKDLPITTEELYQRLKARGVLMVPGHYFFPGLDKEWPHTHQCMRMNYV--PE----  394 (417)
T ss_pred             HHhcCccceeeecC-CcceeehhhhccCCCCHHHHHHHHHhCeEEEecccccCCCCCCCCCCccceEEEecC--CC----
Confidence            55554445555443 4556667667777789999999999999998543  234433  2445568999742  22    


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 013217          381 EKEFVAIADFIHEGVEI  397 (447)
Q Consensus       381 ~~di~~l~~~i~~~l~~  397 (447)
                      ++.|+.=+.+|.+.++.
T Consensus       395 ~~~ie~Gva~lae~ve~  411 (417)
T COG3977         395 PEKIEKGVAILAEEVER  411 (417)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            66777666666666553

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=99.59  E-value=1.3e-12  Score=123.14  Aligned_cols=314  Identities=15%  Similarity=0.123  Sum_probs=185.8

Q ss_pred             cCchhHHHHHHHHHHHHHHHHcCCC-CCccceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccc
Q 013217           58 YGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRV  135 (447)
Q Consensus        58 ~~g~~~~~~le~~~~~~~~~~~g~~-~~~~~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~  135 (447)
                      ||.+....++-...++.....++.+ .+.|  .+..|+|+ .+++.+++.++++||.|++..+.+.+.+.        .+
T Consensus        96 Yg~s~G~peLl~fik~h~~~~ih~p~~~~w--diiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL~--------s~  165 (472)
T KOG0634|consen   96 YGQSSGIPELLLFIKDHNRPTIHAPPYKNW--DIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSALQ--------SM  165 (472)
T ss_pred             cccccCcHHHHHHHHHhccccccCCCCCCc--eEEEecCCchHHHHHHHHhhcCCCceEEecccchHHHH--------hc
Confidence            4444445555433333222233344 4556  45558886 99999999999999999999888776553        23


Q ss_pred             ccccceeEEEecccCCCCCCCCHHHHHHHhhh--------hCCcEEEEc-CCCCCC--CCCh---HHHHHHHHHhCCEEE
Q 013217          136 SGTSIYFESMPYRLDESTGLVDYDMLEKTAIL--------FRPKLIIAG-ASAYPR--DFDY---PRMRQIADAVGALLM  201 (447)
Q Consensus       136 ~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~--------~~~klii~~-~~~~~~--~~~~---~~i~~ia~~~g~~li  201 (447)
                      +..|  ++++|++.|  ...+|+|.|++....        .+|++++.- .-+||+  ....   ++|.++|++|+.+++
T Consensus       166 ~a~g--v~~ipv~md--~~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIV  241 (472)
T KOG0634|consen  166 EALG--VKIIPVKMD--QDGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIV  241 (472)
T ss_pred             cccC--ceEEecccc--CCCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEE
Confidence            4445  577786665  456999999998753        146776654 335554  4443   699999999999999


Q ss_pred             Eehhhhcccccc-------------------ccCCCCCC----cccEEEeCCCccc-CCCCCceEEeecCCcchhhHHHH
Q 013217          202 MDMAHISGLVAA-------------------SVVADPFK----YCDVVTTTTHKSL-RGPRGGMIFFKKDPVLGVELESA  257 (447)
Q Consensus       202 vD~a~~~g~~~~-------------------~~~~~~~~----~~Di~~~s~~K~l-~Gp~gG~i~~~~~~~~~~~~~~~  257 (447)
                      .|+.++.-.+..                   .+.++.+.    +.-+-..|++|-+ +|.|-||+.+++      .+.++
T Consensus       242 eDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~it~~~------~~l~r  315 (472)
T KOG0634|consen  242 EDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWITGNS------LFLKR  315 (472)
T ss_pred             ecCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEeecCH------HHHHH
Confidence            999865432221                   00111111    2225668999987 588889999998      55555


Q ss_pred             hhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHH----HHHHHHHHHHHHHHHHHHH---CC-cEeeeCCCCCeeEEecC
Q 013217          258 INNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK----VYQNKVVSNCRALASRLVE---LG-YKLVSGGSDNHLVLVDL  329 (447)
Q Consensus       258 i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~----~~~~~~~~~~~~l~~~L~~---~g-~~~~~~~~~~~~~~v~~  329 (447)
                      +-...--.++ +|+.....-+.+-|+.+.++||.    +.+.....++..+..+|.+   .. ++++. +...++.|+.+
T Consensus       316 il~~ae~~t~-~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~-P~aGmFiwv~i  393 (472)
T KOG0634|consen  316 ILDLAEVATS-GPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHP-PKAGMFIWVEI  393 (472)
T ss_pred             Hhhhcceeec-CcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEec-CCcceEEEEEe
Confidence            4432221222 24332222233345555555553    3333444566667777766   23 34443 35678888877


Q ss_pred             C------CCCCC-H-HHHHHHHhhcCeEEccCCCC-CCCCCC-CCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          330 R------PMGID-G-ARVEKILDMASITLNKNSVP-GDKSAL-VPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       330 ~------~~~~~-~-~~~~~~L~~~gI~v~~~~~p-~~~~~~-~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      .      +.+++ . +.+...+.++||.+-.+... .++... ..-.+|++...+-     .+++++-++.+..+++..
T Consensus       394 ~~~~~~~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~a~-----~e~l~~g~~rf~~~ike~  467 (472)
T KOG0634|consen  394 PYINFDTKKSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIAFAE-----PEKLDEGIERFGSVIKEH  467 (472)
T ss_pred             cccccccccchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEeecCC-----HHHHHHHHHHHHHHHHHH
Confidence            4      12333 2 23445667899987432110 011111 1237999865433     677777777777777643

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.57  E-value=4.6e-12  Score=125.61  Aligned_cols=320  Identities=16%  Similarity=0.140  Sum_probs=177.7

Q ss_pred             CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc---
Q 013217           31 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---  107 (447)
Q Consensus        31 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~---  107 (447)
                      .-.|.|.+++.+.+.+-.   +.+..++  ++.  .+  ...+++.++.... + .  ....+||++|+..++....   
T Consensus        56 h~~p~v~~ai~~q~~~~~---~~~~~~~--~~~--~~--~la~~L~~~~~~~-~-~--v~f~~sGseA~e~AlklAr~~~  122 (408)
T PRK04612         56 HNDPDLVAALTEQAGKLW---HTSNVFY--SAP--PL--KLAEELVTASRFA-E-K--VFLCNSGTEANEAAIKLVRKWA  122 (408)
T ss_pred             CCCHHHHHHHHHHHHhcc---ccccccC--CHH--HH--HHHHHHHhhCCCC-C-E--EEEcCchHHHHHHHHHHHHHHH
Confidence            347899999888776421   1111111  111  11  2224555555322 2 1  2446899999998876432   


Q ss_pred             ---C--C-CCEEEEecCCCCcccCCCccccccccccccc-----eeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 013217          108 ---K--P-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-----YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG  176 (447)
Q Consensus       108 ---~--p-gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~  176 (447)
                         +  + ..+|+...-.|.|... +      .+...+.     .+...+..+. .-...|++.+++++...++.+|++.
T Consensus       123 ~~~g~~~~r~~ii~~~~~yHG~t~-~------~~s~~~~~~~~~~~~~~~~~~~-~~~~~d~~~l~~~~~~~~~aavi~e  194 (408)
T PRK04612        123 SSQGRPADKRVIVTFRGSFHGRTL-A------AVTATAQPKYQEGYEPLPGGFR-YVDFNDVEALEAAMAGGDVAAVMLE  194 (408)
T ss_pred             HhhCCCCCCcEEEEECCCcCCccH-H------HHHhcCCcccccCCCCCCCCce-EcCCCCHHHHHHhhCCCCEEEEEEC
Confidence               1  2 2468877655433310 0      0111110     0100000000 0012378999988865456666666


Q ss_pred             CCCCC-CCC--C---hHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccC-CCCCceEEeec
Q 013217          177 ASAYP-RDF--D---YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLR-GPRGGMIFFKK  246 (447)
Q Consensus       177 ~~~~~-~~~--~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~-Gp~gG~i~~~~  246 (447)
                      +.... +..  +   +++|.++|++||+++|+|++|. |+...+.. . ...+ ..|+++  ++|.++ |.+.|++++++
T Consensus       195 P~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~~a~~~~~~~pdi~t--~~K~l~~G~piga~~~~~  271 (408)
T PRK04612        195 PIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQC-GMGRTGTLFAHWQEQVTPDIVT--LAKALGGGFPIGAMLAGP  271 (408)
T ss_pred             CccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCCchhhhhhcCCCCCEEE--EcchhcCCCceEEEEECH
Confidence            33222 222  2   7899999999999999999984 54333311 0 0001 135554  469984 55668888776


Q ss_pred             CCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC--CcEeeeC--CCCC
Q 013217          247 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVSG--GSDN  322 (447)
Q Consensus       247 ~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~--~~~~  322 (447)
                            ++.+.+......++.+ .+....++...+++.+.++   ++.++..+..++|.+.|++.  .+.++..  +. .
T Consensus       272 ------~~~~~~~~~~~~~t~~-~~p~~~aaa~a~L~~~~~~---~l~~~~~~~g~~l~~~l~~l~~~~~~i~~vrg~-G  340 (408)
T PRK04612        272 ------KVAETMQFGAHGTTFG-GNPLAAAVARVALRKLASP---QIAANVARQSAALRAGLEALNAEFGVFAQVRGR-G  340 (408)
T ss_pred             ------HHHhhhcCCCcCCCCC-CCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhhCCCeeeeecc-c
Confidence                  6666665433333333 3455555556677776543   34667777777888877662  1222221  11 2


Q ss_pred             eeEEecCCCC-CCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          323 HLVLVDLRPM-GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       323 ~~~~v~~~~~-~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      .+.-+.+.+. .-....+.+.|.++||.+..    .     .++.+|+.++...+    ++|++++.+.+.+++...
T Consensus       341 l~~~i~~~~~~~~~a~~i~~~l~~~Gvlv~~----~-----g~~~lRl~Ppl~it----~eeid~~l~~l~~~l~~~  404 (408)
T PRK04612        341 LMLGAVLAPAHAGQAGAILDLAAEHGLLLLQ----A-----GPDVLRFVPALNLT----DAELADGLARLRLALADY  404 (408)
T ss_pred             eEEEEEecCchhhHHHHHHHHHHHCCeEEee----C-----CCCEEEEcCCccCC----HHHHHHHHHHHHHHHHHH
Confidence            2223333221 11245677888899999842    1     23589999887666    999999999999998754

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=99.56  E-value=7.9e-13  Score=125.64  Aligned_cols=300  Identities=16%  Similarity=0.216  Sum_probs=194.0

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCccceeeecCCc-HHHHHHHHHHh---cCC--C---CEEEEecCCCCcccCCCccccccc
Q 013217           64 IDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTAI---LKP--H---DRIMGLDLPHGGHLSHGFMTPKRR  134 (447)
Q Consensus        64 ~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sG-s~a~~~~~~al---~~p--g---d~Vl~~~~~~~~~~~~~~~~~~~~  134 (447)
                      ...+|.++...++.+|+.+.++++.   .|+| |++..+.....   ...  |   ..+++....|.+.-        +.
T Consensus       118 ~~~~e~~~Vnm~~~L~~~~~~~~g~---~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~e--------K~  186 (491)
T KOG1383|consen  118 VRKLEAECVNMIANLFNAPSDSCGC---GTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFE--------KA  186 (491)
T ss_pred             hHHHHHHHHHHHHHHhcCCccccCc---cccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHH--------HH
Confidence            4567778889999999999765432   2444 57754443332   111  1   12333322221110        11


Q ss_pred             cccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHH-hCCEEEEehhhhcccc
Q 013217          135 VSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADA-VGALLMMDMAHISGLV  211 (447)
Q Consensus       135 ~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~-~g~~livD~a~~~g~~  211 (447)
                      ....+.  ++..+++++.++.+|+..+.+.+++ +|.+++...+++|.  ..|+++|.++.-+ +++++++|++ ..|++
T Consensus       187 a~yf~v--~l~~V~~~~~~~~~D~~k~~~~i~e-Nti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~-~GgFi  262 (491)
T KOG1383|consen  187 ARYFEV--ELREVPLDEGDYRVDPGKVVRMIDE-NTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDAC-LGGFI  262 (491)
T ss_pred             HhhEEE--EEEeeeccccceEecHHHHHHHhcc-ceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeeccc-Ccccc
Confidence            122333  4445557777899999999999998 99999988777775  6789999999998 9999999988 45555


Q ss_pred             cc-ccC-CCCCC----cccEEEeCCCcccCCCCC-ceEEeecCCcchhhHH-HHh--hhccC------CCCCCCCcHHHH
Q 013217          212 AA-SVV-ADPFK----YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELE-SAI--NNAVF------PGLQGGPHNHTI  275 (447)
Q Consensus       212 ~~-~~~-~~~~~----~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~-~~i--~~~~~------~~~~g~p~~~~~  275 (447)
                      .. +.. ..+++    +.--++.++||+-..|.| |+++.++.     ++. +.+  .....      |+..|+-...++
T Consensus       263 ~p~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~~G~~~vl~r~k-----~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~v  337 (491)
T KOG1383|consen  263 NPAGYLNEEEFDFRVPGVTSISADGHKYGLAPAGSSWVLYRNK-----ELLPHQLFFHTDWLGGIYASPTLNGSRPGSQV  337 (491)
T ss_pred             ccccccCccccccCCCCceeEeeccceeeeeecCcEEEEEccc-----ccccceEEEeccccCccccCcccccCCcccHH
Confidence            43 221 11222    566788999998677888 88888775     221 111  11111      222333344567


Q ss_pred             HHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCC
Q 013217          276 GGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNS  354 (447)
Q Consensus       276 aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~  354 (447)
                      ++.++++-.+..+||.+..+++.++++.|++.+++ .++.+++.+ +  ..++.+.....+-.++.+.|.+.|..++...
T Consensus       338 a~~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~~i~i~gkp-~--vs~~~~~s~~~~i~elsd~l~~~GW~lnalq  414 (491)
T KOG1383|consen  338 AAQWAALMSLGEEGYRENTQNIVETARKLREGIENIKGIKIVGKP-L--VSFILFGSNDVNIFELSDLLRKKGWILNALQ  414 (491)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhccccceecCCC-c--EEEEEccCCccchhhhhHHHHhcCcCccccC
Confidence            77788887777889999999999999999999998 678887652 2  2233333444567889999999999987643


Q ss_pred             CCCCCCCCCCCeEEEecCccccCCCCHHH-HHHHHHHHHHHHHHH
Q 013217          355 VPGDKSALVPGGIRIGSPAMTTRGFSEKE-FVAIADFIHEGVEIT  398 (447)
Q Consensus       355 ~p~~~~~~~~~~iRig~~~~~~~g~~~~d-i~~l~~~i~~~l~~~  398 (447)
                      .|        .++-++....+.    .++ .++++.-|.+++...
T Consensus       415 ~P--------~a~Hi~vt~~~~----~~~~A~~~v~Di~~~~~el  447 (491)
T KOG1383|consen  415 FP--------AAIHICVTRVHA----REDVADRFVADIRKVVEEL  447 (491)
T ss_pred             CC--------CceEEEEEeeec----cHHHHHHHHHHHHHHHHHH
Confidence            33        255565544444    344 455555555655544

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=99.56  E-value=2.7e-13  Score=125.75  Aligned_cols=273  Identities=16%  Similarity=0.269  Sum_probs=145.8

Q ss_pred             CHHHHHHHhhhhhc--cC--CCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcC
Q 013217           33 SRAVMEAVGSCLTN--KY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK  108 (447)
Q Consensus        33 ~~~v~~a~~~~~~~--~~--~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~  108 (447)
                      ...|++|+...-.+  ++  +.||..     +....+.+|    +-+++.||++.+-  +.-|..|||+|+..++.++++
T Consensus        26 q~KVL~Af~~~~vs~~hf~~tTGYGY-----~D~GRd~le----~iyA~vfgaE~AL--VRpq~vSGTHAi~~~Lfg~Lr   94 (403)
T PF06838_consen   26 QLKVLKAFQENRVSDSHFAGTTGYGY-----DDIGRDKLE----RIYADVFGAEDAL--VRPQFVSGTHAIALALFGVLR   94 (403)
T ss_dssp             HHHHHHHHHHTT--GGGCS---TT-T-----T-HHHHHHH----HHHHHHCT-SEEE--EETTS-SHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHcCCChhhcCCCCcCCC-----CCccHHHHH----HHHHHHhCchhhh--hcccccchHHHHHHHHHhcCC
Confidence            45677777653222  11  123322     233466777    4689999999642  355678999999999999999


Q ss_pred             CCCEEEEec-CCCCcc---cCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCCCCC-
Q 013217          109 PHDRIMGLD-LPHGGH---LSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG-ASAYPR-  182 (447)
Q Consensus       109 pgd~Vl~~~-~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~-~~~~~~-  182 (447)
                      |||+.+... .+|.-.   +...- .....+.-.|..|+-  +++. +++.+|++.+++.+++ +||+|.+. +-.|.. 
T Consensus        95 pGD~ll~~tG~PYDTL~~VIG~~g-~~~GSL~e~Gi~Y~~--v~L~-~dg~~D~~~i~~~~~~-~tk~v~IQRSrGYs~R  169 (403)
T PF06838_consen   95 PGDELLSITGKPYDTLEEVIGIRG-NGPGSLKEFGIKYRE--VPLT-EDGTIDWEAIKKALKP-NTKMVLIQRSRGYSWR  169 (403)
T ss_dssp             TT-EEEESSSS--CCHHHHHTSSS-SSSSSTGGGT-EEEE----B--TTSSB-HHHHHHHHHT-TEEEEEEE-S-TTSSS
T ss_pred             CCCeEEEcCCCchhhHHHHhCCCC-CCCCChHHhCceeEE--Eeec-CCCCcCHHHHHHhhcc-CceEEEEecCCCCCCC
Confidence            999999644 122100   00000 000122233444444  4454 4688999999999997 99999997 445654 


Q ss_pred             -CCChHHHHH---HHHHh--CCEEEEehhhhccccccccCCCCCC-cccEEEeCCCcccCC---CCCceEEeecCCcchh
Q 013217          183 -DFDYPRMRQ---IADAV--GALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRG---PRGGMIFFKKDPVLGV  252 (447)
Q Consensus       183 -~~~~~~i~~---ia~~~--g~~livD~a~~~g~~~~~~~~~~~~-~~Di~~~s~~K~l~G---p~gG~i~~~~~~~~~~  252 (447)
                       .+.+++|.+   ++|+.  +++++||.++. -++-   ...|.. ++|++++|+-|+.+|   |.||+|+.++      
T Consensus       170 ~sl~i~~I~~~i~~vk~~~p~~iifVDNCYG-EFvE---~~EP~~vGADl~aGSLIKNpGGgiAptGGYIaGr~------  239 (403)
T PF06838_consen  170 PSLTIEEIKEIIKFVKEINPDVIIFVDNCYG-EFVE---TQEPTEVGADLMAGSLIKNPGGGIAPTGGYIAGRK------  239 (403)
T ss_dssp             ----HHHHHHHHHHHHHH-TTSEEEEE-TTT-TTTS---SS-GGGGT-SEEEEETTSGGGTTT-SS-EEEEESH------
T ss_pred             CCCCHHHHHHHHHHHHhhCCCeEEEEeCCcc-eecc---ccCccccchhheeccceeCCCCCccCcCCEEechH------
Confidence             444555544   45544  79999999852 2221   123433 799999999999864   7889999998      


Q ss_pred             hHHHHhhh-ccCCCCC---C-CCcHH--HHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCe--
Q 013217          253 ELESAINN-AVFPGLQ---G-GPHNH--TIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNH--  323 (447)
Q Consensus       253 ~~~~~i~~-~~~~~~~---g-~p~~~--~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~--  323 (447)
                      ++.++... ...||..   | +....  .+.++..|         ...+.+-.+-+...+.-+++.|+++.+...+.+  
T Consensus       240 ~lVe~~a~RLTaPGiG~e~G~t~~~~R~~~QGlFlA---------P~vV~eAlKgaif~A~~fe~lG~~v~P~~~~~R~D  310 (403)
T PF06838_consen  240 DLVERAAYRLTAPGIGKEVGATLGTNRLMFQGLFLA---------PHVVGEALKGAIFAAALFEKLGFEVSPKPDDPRSD  310 (403)
T ss_dssp             HHHHHHHHHHS-TTTGGGSS--TTTHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHTT-EEES-TTS--SS
T ss_pred             HHHHHHHhhhcCCccccccccCcchHHHHHhHHhhc---------hHHHHHHHHHHHHHHHHHHHcCCcCCCCCCCCCCc
Confidence            77776543 3456541   1 11111  11111111         233455556666667777889999887433222  


Q ss_pred             -eEEecCCCCCCCHHHHHHHHh
Q 013217          324 -LVLVDLRPMGIDGARVEKILD  344 (447)
Q Consensus       324 -~~~v~~~~~~~~~~~~~~~L~  344 (447)
                       +..+.+.    +.+.+..+++
T Consensus       311 iIQai~l~----~~e~l~~FC~  328 (403)
T PF06838_consen  311 IIQAIELG----SPEKLIAFCQ  328 (403)
T ss_dssp             S-EEEE-S----SHHHHHHHHH
T ss_pred             eEEEEECC----CHHHHHHHHH
Confidence             1233443    5677777664

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=99.56  E-value=4.2e-13  Score=118.00  Aligned_cols=278  Identities=18%  Similarity=0.181  Sum_probs=175.6

Q ss_pred             cCCCCCccceeeecCCcH-HHHHHHHHHhcCCC-CEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCC
Q 013217           79 FNLDENKWGVNVQPLSGS-PANFEVYTAILKPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLV  156 (447)
Q Consensus        79 ~g~~~~~~~~~v~~~sGs-~a~~~~~~al~~pg-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i  156 (447)
                      -++.++    |+....|+ +.+.+++++.+.|| ++|+..+|.|+.+.-        .....+  .+++.+++++ ++.+
T Consensus        82 kpLt~d----nic~GvGsDE~ID~iiR~~c~PGkeKIl~cPPtysMY~v--------~A~iNd--~eVvkvpl~p-dF~l  146 (375)
T KOG0633|consen   82 KPLTSD----NICVGVGSDELIDLIIRCVCDPGKEKILDCPPTYSMYVV--------DAAIND--AEVVKVPLNP-DFSL  146 (375)
T ss_pred             CCCCcc----ceEEecCcHHHHHHHHhheecCCccceeecCCcceeEEE--------EeecCC--ceEEEecCCC-Cccc
Confidence            345554    55668898 88898999999999 899998887765421        112233  4666777775 6899


Q ss_pred             CHHHHHHHhhhh-CCcEEEEcCCCCCC--CCChHHHHHHHHHh-CCEEEEehhhhccccccccCCCCC--Cccc-EEEeC
Q 013217          157 DYDMLEKTAILF-RPKLIIAGASAYPR--DFDYPRMRQIADAV-GALLMMDMAHISGLVAASVVADPF--KYCD-VVTTT  229 (447)
Q Consensus       157 d~~~l~~~~~~~-~~klii~~~~~~~~--~~~~~~i~~ia~~~-g~~livD~a~~~g~~~~~~~~~~~--~~~D-i~~~s  229 (447)
                      |.|++.+.++.. ++|.+++++|+||+  .+..+.|.++.+-- |.++++|+|+ ..+...+ ...++  .+-. ++.-+
T Consensus       147 nvdai~evl~~ds~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAY-idFsg~~-S~~~lV~kYpNLivlqT  224 (375)
T KOG0633|consen  147 NVDAIAEVLELDSKIKCIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAY-IDFSGVE-SRMKLVKKYPNLIVLQT  224 (375)
T ss_pred             cHHHHHHHHhccccceEEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeee-Eeecccc-ccchHhHhCCceeehhh
Confidence            999999988764 78999999999987  55566666666532 6899999995 3332211 01111  1333 56678


Q ss_pred             CCccc--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHH
Q 013217          230 THKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASR  307 (447)
Q Consensus       230 ~~K~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~  307 (447)
                      ++|.+  +|.|.|+-+.+.      .+.+.+++...|+..+.+.  ..+|++ |+..-....++.+.+.+.+.+.+|.+.
T Consensus       225 lSKsfGLAGiRvG~~~~~~------~ia~iln~~KaPYNiS~~~--s~~AL~-Als~~n~kkme~~rdaiv~er~RL~ke  295 (375)
T KOG0633|consen  225 LSKSFGLAGIRVGYGAFPL------SIAEILNRAKAPYNISVAG--SVAALA-ALSDSNGKKMEDVRDAIVRERERLFKE  295 (375)
T ss_pred             hhhhcCcceeEeecccccH------HHHHHHHhccCCccccchh--HHHHHH-hcCcccchHHHHHHHHHHHHHHHHHHH
Confidence            88975  688889988888      6888888777776433221  122332 222111122467788888889999999


Q ss_pred             HHH-CCcEeeeCCCCCeeEEecCCCC--CCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHH
Q 013217          308 LVE-LGYKLVSGGSDNHLVLVDLRPM--GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEF  384 (447)
Q Consensus       308 L~~-~g~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di  384 (447)
                      |.+ .++.-+.++.++.+.++.+...  +.......+.+.+.||.|+..   +. .+.-.+++||+.+   +    +|+-
T Consensus       296 Lt~v~~~~~~~gg~daNFiLi~v~~~~n~~akkly~q~at~~gVvVRfr---gs-e~~c~G~lRitvG---t----~Een  364 (375)
T KOG0633|consen  296 LTEVPFLNDYPGGSDANFILIEVTGGDNGMAKKLYKQDATKMGVVVRFR---GS-EEGCKGYLRITVG---T----PEEN  364 (375)
T ss_pred             hhcCccccCCCCcccccEEEEEEcCCCcHHHHHHHHHHHHhcceEEEEc---CC-ccccceeEEEEcC---C----cccc
Confidence            988 3444344567777777766431  222223344456789999852   11 1123567998643   1    4454


Q ss_pred             HHHHHHHHH
Q 013217          385 VAIADFIHE  393 (447)
Q Consensus       385 ~~l~~~i~~  393 (447)
                      ..+.+.+++
T Consensus       365 tvL~k~~K~  373 (375)
T KOG0633|consen  365 TVLMKCLKQ  373 (375)
T ss_pred             hHHHHHHHh
Confidence            555555544

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=99.56  E-value=1.7e-12  Score=132.55  Aligned_cols=232  Identities=18%  Similarity=0.161  Sum_probs=149.3

Q ss_pred             hHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcC----C-----C------------------C---
Q 013217           62 EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK----P-----H------------------D---  111 (447)
Q Consensus        62 ~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~----p-----g------------------d---  111 (447)
                      +....+|+.+.+++++++|.+. .|+.  .+++||.||+.++.+..+    |     +                  |   
T Consensus       119 P~~t~lE~~vi~~la~l~G~~~-~~G~--~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~  195 (608)
T TIGR03811       119 PATSQMEEEVGKEFATLMGYKN-GWGH--IVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIM  195 (608)
T ss_pred             chHHHHHHHHHHHHHHHhCCCC-CCeE--EeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhccccccccc
Confidence            4467899999999999999975 4643  346777999876654321    0     0                  0   


Q ss_pred             ----------------------------EEEEecCCCCcccCCCcccccccccccccee-EEEecccCCCCCCCCHHHHH
Q 013217          112 ----------------------------RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYF-ESMPYRLDESTGLVDYDMLE  162 (447)
Q Consensus       112 ----------------------------~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~id~~~l~  162 (447)
                                                  +++++.   .+|++.     .+.+.+.|.+. .++.+++| +++.+|+++|+
T Consensus       196 ~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~---~aHyS~-----~KAa~ilGlG~~~vv~VpvD-~~~rmd~~~L~  266 (608)
T TIGR03811       196 DLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQ---TKHYSW-----LKAADIIGIGLDQVIPVPVD-SNYRMDINELE  266 (608)
T ss_pred             ccccccccchhhhhhhccccccccccceEEEECC---CccHHH-----HHHHHHcCCCcccEEEeecC-CCCcCCHHHHH
Confidence                                        233322   222221     13445666542 34566677 56899999999


Q ss_pred             HHhhhh----CC-cEEEEc--CCCCCCCCChHHHHHHH---HHhCC--EEEEehhhhcccc---ccc----cCC------
Q 013217          163 KTAILF----RP-KLIIAG--ASAYPRDFDYPRMRQIA---DAVGA--LLMMDMAHISGLV---AAS----VVA------  217 (447)
Q Consensus       163 ~~~~~~----~~-klii~~--~~~~~~~~~~~~i~~ia---~~~g~--~livD~a~~~g~~---~~~----~~~------  217 (447)
                      +.+++.    .| -+|+.+  ++..+...|+++|+++|   +++|+  |++||+|++ |..   ..+    ..+      
T Consensus       267 ~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyG-G~~~~l~~~~~~~~~p~~~~~~  345 (608)
T TIGR03811       267 KIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYG-GYGRAIFLDEDDNFIPYDDLQE  345 (608)
T ss_pred             HHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeecccc-chhhhhhccccccccccchhhc
Confidence            988642    22 334444  33333478999999999   66888  699999964 421   111    000      


Q ss_pred             -----------------------CCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhc---c------CC
Q 013217          218 -----------------------DPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNA---V------FP  264 (447)
Q Consensus       218 -----------------------~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~---~------~~  264 (447)
                                             ..++.+|.++..+||++..|-+ |++++++.     .+.+.+...   .      .|
T Consensus       346 ~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~-----~~~~~~~~~a~Yl~~~~~~~p  420 (608)
T TIGR03811       346 VHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDI-----RMRDVISYFATYVFEKGADIP  420 (608)
T ss_pred             ccccccccccccccccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCH-----HHHHHHhcCcchhccccccCc
Confidence                                   0234699999999999988988 99999885     433333210   0      01


Q ss_pred             ------CCCCCCcHHHHHHHHHHHHHh--cChhHHHHHHHHHHHHHHHHHHHHHC
Q 013217          265 ------GLQGGPHNHTIGGLAVCLKHA--QSPEFKVYQNKVVSNCRALASRLVEL  311 (447)
Q Consensus       265 ------~~~g~p~~~~~aal~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~  311 (447)
                            +..|+..-...++++.+++.+  ...+|.+++++..++++++.+.|.+.
T Consensus       421 ~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~  475 (608)
T TIGR03811       421 ALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNL  475 (608)
T ss_pred             ccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                  112333334456777888876  56689999999999999999999874

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=99.55  E-value=4.8e-13  Score=126.72  Aligned_cols=237  Identities=16%  Similarity=0.149  Sum_probs=146.6

Q ss_pred             hcCeeEec-------CCCCCCHHHHHHHhhhhhccCCCCCCCCcccCc-hhHHHHHHHHHHHHHHHHcCCCCCccceeee
Q 013217           20 FKSLELIA-------SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQ   91 (447)
Q Consensus        20 ~~~i~l~~-------~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g-~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~   91 (447)
                      +.-||++-       +-+..++++++++...+.. |.+    ..++.+ ......+- ......+.++|++..   + | 
T Consensus        20 ~~viN~~G~v~~t~lG~s~~~~e~iea~~~~~~~-~v~----Le~~l~~g~~~~R~~-~~~~~~~~~~~aea~---~-i-   88 (395)
T COG1921          20 RRVINAIGTVLMTNLGRSLYSPEAIEAMKEAMRA-PVE----LETDLKTGKRGARLT-ELAELLCGLTGAEAA---A-I-   88 (395)
T ss_pred             hhhhhhhhhheeccCCCccCCHHHHHHHHHHhcc-cce----eeeecccchhhHHHH-HHHHHHhcccchhhe---e-e-
Confidence            55566553       4456799999998776654 211    111211 12222222 223345555555542   2 2 


Q ss_pred             cCCcHHHHHHHHHHhcCCCCEEEEecCCC-CcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCC
Q 013217           92 PLSGSPANFEVYTAILKPHDRIMGLDLPH-GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRP  170 (447)
Q Consensus        92 ~~sGs~a~~~~~~al~~pgd~Vl~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~  170 (447)
                      +..-+.|++.++.++..++..|+..-+.- |+++..     ...+...|.  +.+.++   .++.-...+++.++.+ ++
T Consensus        89 vnnn~aAVll~~~al~~~~EvVis~g~lV~gg~~~v-----~d~~~~aG~--~l~EvG---~tn~t~~~d~~~AIne-~t  157 (395)
T COG1921          89 VNNNAAAVLLTLNALAEGKEVVVSRGELVEGGAFRV-----PDIIRLAGA--KLVEVG---TTNRTHLKDYELAINE-NT  157 (395)
T ss_pred             ECCcHHHHHHHHhhhccCCeEEEEccccccCCCCCh-----hHHHHHcCC--EEEEec---ccCcCCHHHHHHHhcc-CC
Confidence            24555788878888777555555433332 344322     134556665  555644   3456788889999988 88


Q ss_pred             cEEEEc-CCCCCC--CCChHHHHHHHHHhCCEEEEehhhhcccccc---ccCCCCCCcccEEEeCCCcccCCCCCceEEe
Q 013217          171 KLIIAG-ASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAA---SVVADPFKYCDVVTTTTHKSLRGPRGGMIFF  244 (447)
Q Consensus       171 klii~~-~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~---~~~~~~~~~~Di~~~s~~K~l~Gp~gG~i~~  244 (447)
                      ++++=. ++||+.  ..+.+++.++||++|+++++|.+  +|....   ++....-.++|++++|++|.|.||++|+|++
T Consensus       158 a~llkV~s~~~~f~~~l~~~~l~~ia~~~~lpvivD~a--Sg~~v~~e~~l~~~la~GaDLV~~SgdKllgGPqaGii~G  235 (395)
T COG1921         158 ALLLKVHSSNYGFTGMLSEEELVEIAHEKGLPVIVDLA--SGALVDKEPDLREALALGADLVSFSGDKLLGGPQAGIIVG  235 (395)
T ss_pred             eeEEEEeeccccccccccHHHHHHHHHHcCCCEEEecC--CccccccccchhHHHhcCCCEEEEecchhcCCCccceEec
Confidence            876544 556653  67889999999999999999997  443211   1111111279999999999999999999999


Q ss_pred             ecCCcchhhHHHHhhhccC--CCCCCCCcHHHHHHHHHHHHHhcChh
Q 013217          245 KKDPVLGVELESAINNAVF--PGLQGGPHNHTIGGLAVCLKHAQSPE  289 (447)
Q Consensus       245 ~~~~~~~~~~~~~i~~~~~--~~~~g~p~~~~~aal~~al~~~~~~~  289 (447)
                      ++      ++.++++....  ....   .-..++++.++|+.....+
T Consensus       236 kK------elI~~lq~~~l~Ralrv---~K~tla~l~~aLe~y~~~~  273 (395)
T COG1921         236 KK------ELIEKLQSHPLKRALRV---DKETLAALEAALELYLQPE  273 (395)
T ss_pred             hH------HHHHHHHhhhhhhhhhc---CcHhHHHHHHHHHHHcCch
Confidence            99      78887765321  1112   2245788888998877643

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.55  E-value=8.6e-12  Score=124.31  Aligned_cols=320  Identities=17%  Similarity=0.139  Sum_probs=173.3

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc----
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  107 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~----  107 (447)
                      ..|.|.+++.+.+.+-.   +.. ++.. .+    ......+++.+++....+   ....++||++|+.+++....    
T Consensus        92 ~hp~v~~Av~~ql~~l~---~~~-~~~~-~~----~~~~lAe~L~~~~p~~~~---~v~f~~SGsEA~e~AlklAr~~t~  159 (442)
T TIGR03372        92 RNPNVIAAVENQLAKQP---LHS-QELL-DP----LRALLAKTLAALTPGKLK---YSFFCNSGTESVEAALKLAKAYQS  159 (442)
T ss_pred             CCHHHHHHHHHHHHhCC---Ccc-cccC-CH----HHHHHHHHHHHhCCCCcC---EEEEeCCchHHHHHHHHHHHHHHh
Confidence            47999999888775421   111 1111 11    111223566666643322   12346899999998876431    


Q ss_pred             -CCCCEEEEecCCCCcccCCCccccccccccccce-eEEEecccCCCC---CCCCHHHHHHHhhh-----hCCcEEEEcC
Q 013217          108 -KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDEST---GLVDYDMLEKTAIL-----FRPKLIIAGA  177 (447)
Q Consensus       108 -~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~---~~id~~~l~~~~~~-----~~~klii~~~  177 (447)
                       +...+|++..-.|.|... +      .+..++.. ++....+..+.-   -..|.+++++.++.     .++.+|++.+
T Consensus       160 ~~gr~~ii~~~~~yHG~t~-~------~ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~~~~l~~~~~~~~~vAavIvEp  232 (442)
T TIGR03372       160 PRGKFTFIAASGAFHGKSL-G------ALSATAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNECKKTGDDVAAIILEP  232 (442)
T ss_pred             hcCCcEEEEECCCccCCCH-H------HhhccCCcccCCCCCCCCCCCEEeCCCCHHHHHHHHHHHhcCCCcEEEEEEeC
Confidence             123578887765544311 0      01111110 000000000000   02367777776642     2455666652


Q ss_pred             C-CCCC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccCCC--CCceEEeec
Q 013217          178 S-AYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRGP--RGGMIFFKK  246 (447)
Q Consensus       178 ~-~~~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~Gp--~gG~i~~~~  246 (447)
                      - ...+ ..+    +++++++|++||+++|+|++| .|+-..|.. . .-.+ ..|++++  .|.|+|.  +.|.+++++
T Consensus       233 v~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~-tG~GRtG~~~a~e~~gv~PDivt~--gK~lg~G~~Pigavv~~~  309 (442)
T TIGR03372       233 IQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQ-TGMGRTGKMFACEHEGVQPDILCL--AKALGGGVMPIGATIATE  309 (442)
T ss_pred             ccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecc-cCCCccccchhhhhcCCCCCeeee--hhhhcCCcccceEEEecH
Confidence            1 1222 444    799999999999999999998 454222211 0 0011 2688875  5999643  456666766


Q ss_pred             CCcchhhHHHHhhhc--cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC--CcE-eeeCC-C
Q 013217          247 DPVLGVELESAINNA--VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYK-LVSGG-S  320 (447)
Q Consensus       247 ~~~~~~~~~~~i~~~--~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~-~~~~~-~  320 (447)
                            ++.+.+...  .+.++.++ ++..+++..++++.+.+++   ..++..+..++|.+.|++.  .+. .+..- .
T Consensus       310 ------~i~~~~~~~~~~~~~T~~g-np~~~Aaa~a~L~~i~~~~---l~~~~~~~G~~l~~~L~~l~~~~~~~i~~vRG  379 (442)
T TIGR03372       310 ------AVFSVLFDNPFLHTTTFGG-NPLACAAALATINELLEKN---LPAQAAIKGDFLLDGFQQLAAEYPDLIIEARG  379 (442)
T ss_pred             ------HHHHhhhccCccccCCCCC-CHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHhCCCceEEEec
Confidence                  666665321  11122222 4555555556777766544   3555666667777777652  121 11110 1


Q ss_pred             CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          321 DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       321 ~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      ...+.-+.+.... ....+.+.|.++||.+... .|      ....+|+.++...|    ++|++++.+++++++
T Consensus       380 ~Gl~~giel~~~~-~~~~i~~~l~~~Gvl~~~~-~~------~~~~lr~~Ppl~~t----~~~id~~~~~l~~~~  442 (442)
T TIGR03372       380 KGLLMAIEFRDNE-IGYAFAKELFQQNILVAGT-LN------NAKSIRIEPPLTIT----IEQCALVIKAAKDAL  442 (442)
T ss_pred             ceEEEEEEeCChH-HHHHHHHHHHHCCcEEeec-CC------CCCEEEEECCcccC----HHHHHHHHHHHHHhC
Confidence            1233334443221 2456778888899998532 11      13589999887777    999999999998763

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.55  E-value=2.7e-12  Score=135.59  Aligned_cols=274  Identities=13%  Similarity=0.064  Sum_probs=174.7

Q ss_pred             HHHHHHHHcCCCCCccceeeecCCc-HHHHHHHHHHh---cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEe
Q 013217           71 CQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTAI---LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMP  146 (447)
Q Consensus        71 ~~~~~~~~~g~~~~~~~~~v~~~sG-s~a~~~~~~al---~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  146 (447)
                      -+..+++++|++..    |.....+ |.+..+++++.   .+++++|++++..|+.......      ......+++++.
T Consensus       114 ~Qt~i~eLtGm~~a----NaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~------t~a~~~g~~v~~  183 (939)
T TIGR00461       114 FQTVVSDLTGLPVA----NASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVLH------TRAKPFGIEVIV  183 (939)
T ss_pred             HHHHHHHHHCCChh----hhhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHHH------HHHHhcCcEEEE
Confidence            45789999999953    3323333 34445555553   2345899999888866542110      011223344444


Q ss_pred             cccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC-CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-ccc
Q 013217          147 YRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCD  224 (447)
Q Consensus       147 ~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-~~D  224 (447)
                               +|+++|++.+   ++..+++..|++.+ ..|+++|.+++|++|++++++.-..+..    +...|-+ ++|
T Consensus       184 ---------~~~~~l~~~~---~~~~v~~q~Pn~~G~ied~~~i~~~~h~~gal~~~~ad~~al~----ll~~Pge~GaD  247 (939)
T TIGR00461       184 ---------VDCSDIKKAV---DVFGCLLQYPATDGSILDYKQLIDALHSHKSLVSVAADLMALT----LLTPPGHYGAD  247 (939)
T ss_pred             ---------EcHHHHhhcC---CEEEEEEECCCCCeEEecHHHHHHHHHHcCCEEEEEechHHhC----CcCCHHHcCCc
Confidence                     2455666554   45677777777776 5599999999999999999976543332    2233333 699


Q ss_pred             EEEeCCCccc-----CCCCCceEEeecCCcchhhHHHHhhhcc------------C-----C---C---CCCCCcH---H
Q 013217          225 VVTTTTHKSL-----RGPRGGMIFFKKDPVLGVELESAINNAV------------F-----P---G---LQGGPHN---H  273 (447)
Q Consensus       225 i~~~s~~K~l-----~Gp~gG~i~~~~~~~~~~~~~~~i~~~~------------~-----~---~---~~g~p~~---~  273 (447)
                      |++++.+++.     +||..|++.++++      +...+....            +     .   .   .-++.|.   .
T Consensus       248 i~vg~~q~fg~p~g~GGP~aG~~a~~~~------l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~q  321 (939)
T TIGR00461       248 IVLGSSQRFGVPMGYGGPHAAFFAVKDE------YNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQ  321 (939)
T ss_pred             EEeeCCCccCCCCCCCCCceeeeeecHh------hHhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHHH
Confidence            9988887763     4777799999984      333221000            0     0   0   0122222   2


Q ss_pred             HHHHHHHH--HHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEc
Q 013217          274 TIGGLAVC--LKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN  351 (447)
Q Consensus       274 ~~aal~~a--l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~  351 (447)
                      .+.++.++  +..+...|+++..+++...+.+|++.|.+.|+++..+ .--..+.+.+.  ..+.+++.+.|.++||.++
T Consensus       322 aL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~G~~~~~~-~fF~~~~v~~~--~~~~~~i~~~~~~~gi~l~  398 (939)
T TIGR00461       322 VLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLENDPHELINK-TWFDTLTVKVG--NGISSELLKAAEEFNINLR  398 (939)
T ss_pred             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-CccceEEEEeC--CCCHHHHHHHHHHCCCeee
Confidence            23333333  3444556788889999999999999999999988754 11112334442  1356789999999999986


Q ss_pred             cCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHH
Q 013217          352 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH  392 (447)
Q Consensus       352 ~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~  392 (447)
                      ..         ..+.++++++..+|    ++|++.+++++.
T Consensus       399 ~~---------~~~~i~~s~~E~~t----~~di~~l~~~~~  426 (939)
T TIGR00461       399 AV---------DTTTVGIALDETTT----KADVENLLKVFD  426 (939)
T ss_pred             ec---------CCCEEEEEeecCCC----HHHHHHHHHHhc
Confidence            41         13479999999998    999999999995

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.55  E-value=2.4e-11  Score=123.17  Aligned_cols=323  Identities=14%  Similarity=0.095  Sum_probs=174.2

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC-CCCCccceeeecCCcHHHHHHHHHHhc---
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN-LDENKWGVNVQPLSGSPANFEVYTAIL---  107 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g-~~~~~~~~~v~~~sGs~a~~~~~~al~---  107 (447)
                      -.|.|.+++.+.+.. +....+..  ....+...++    .+++.+++. .+.+   -....+||++|+.+++....   
T Consensus       106 ~hp~v~~Av~~ql~~-~~~~~~~~--~~~~~~~~~l----ae~L~~~~~~~~~~---~v~f~~SGsEA~e~AlKlAr~~~  175 (504)
T PLN02760        106 SEPRLVAAATEQLNK-LPFYHSFW--NRTTKPSLDL----AKELLEMFTARKMG---KVFFTNSGSEANDTQVKLVWYYN  175 (504)
T ss_pred             CCHHHHHHHHHHHhh-ccceeccc--ccCcHHHHHH----HHHHHhhcCCCCCC---EEEEeCChHHHHHHHHHHHHHHH
Confidence            479999999887754 21111100  0112222222    245666643 2222   12335899999999887652   


Q ss_pred             ----CCC-CEEEEecCCCCcccCCCccccccccccccce------------eEEEecccC-----CCCC-----CCCHHH
Q 013217          108 ----KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY------------FESMPYRLD-----ESTG-----LVDYDM  160 (447)
Q Consensus       108 ----~pg-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~------------~~~~~~~~~-----~~~~-----~id~~~  160 (447)
                          .++ .+|+..+-.|.|... +      .+.++|..            +...+++..     +...     ....++
T Consensus       176 ~~~g~~~r~~iI~~~~~yHG~t~-~------a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  248 (504)
T PLN02760        176 NALGRPNKKKFIARSKSYHGSTL-I------SASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADN  248 (504)
T ss_pred             HhcCCCCCcEEEEECCCccCChH-h------hhhccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHHHH
Confidence                233 578877755433311 0      11111110            111121110     0000     011245


Q ss_pred             HHHHhhh---hCCcEEEEcCC-CCCC-CCC----hHHHHHHHHHhCCEEEEehhh-hccccccccCCCCCC-cccEEEeC
Q 013217          161 LEKTAIL---FRPKLIIAGAS-AYPR-DFD----YPRMRQIADAVGALLMMDMAH-ISGLVAASVVADPFK-YCDVVTTT  229 (447)
Q Consensus       161 l~~~~~~---~~~klii~~~~-~~~~-~~~----~~~i~~ia~~~g~~livD~a~-~~g~~~~~~~~~~~~-~~Di~~~s  229 (447)
                      +++++..   .++.+|++.+. ...+ ..+    +++|+++|++||+++|+|++| ..|-+....-..-++ ..|+++++
T Consensus       249 le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg  328 (504)
T PLN02760        249 LENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVSLA  328 (504)
T ss_pred             HHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCCCCcEEEec
Confidence            7766642   23556776532 1223 445    899999999999999999998 344333211000011 26887775


Q ss_pred             CCcccCCC--CCceEEeecCCcchhhHHHHhhhc-------cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHH
Q 013217          230 THKSLRGP--RGGMIFFKKDPVLGVELESAINNA-------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN  300 (447)
Q Consensus       230 ~~K~l~Gp--~gG~i~~~~~~~~~~~~~~~i~~~-------~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~  300 (447)
                        |.|+|.  +.|.+++++      ++.+.+...       ...+++++ ++..+++..++++.+.+++   ..+++.+.
T Consensus       329 --K~lggG~~PigAv~~~~------~i~d~~~~~~~~~~~~~h~~T~~g-nPl~~Aaala~Le~i~~~~---l~~~~~~~  396 (504)
T PLN02760        329 --KALSSAYMPIGAVLVSP------EISDVIHSQSNKLGSFAHGFTYSG-HPVSCAVALEALKIYKERN---IPEHVNKI  396 (504)
T ss_pred             --ccccCCccccceEeecH------HHHhhhhcccccccCcccCCCCCC-CHHHHHHHHHHHHHHHhCC---HHHHHHHH
Confidence              999652  345577776      677766431       11223333 4555555556777776543   46777777


Q ss_pred             HHHHHHHHHHC-CcEeeeC--CCCCeeEEecCCCC-C----C--C---HHHHHHHHhhcCeEEccCCCCCCCCCCCCCeE
Q 013217          301 CRALASRLVEL-GYKLVSG--GSDNHLVLVDLRPM-G----I--D---GARVEKILDMASITLNKNSVPGDKSALVPGGI  367 (447)
Q Consensus       301 ~~~l~~~L~~~-g~~~~~~--~~~~~~~~v~~~~~-~----~--~---~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~i  367 (447)
                      .++|.+.|++. ...++..  +.. .+.-+.+... .    .  +   ...+.+.|.++||.+...          ...+
T Consensus       397 g~~l~~~L~~l~~~~~v~~vrG~G-l~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~----------g~~l  465 (504)
T PLN02760        397 APRFQDGIKAFSGSPIIGEIRGTG-LILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRVA----------GDNI  465 (504)
T ss_pred             HHHHHHHHHHHhcCCCeeeEEeCc-eEEEEEEecCCcccccccchhHHHHHHHHHHHhCCcEEEec----------CCEE
Confidence            78888777652 1122211  111 1222233211 1    0  0   334667778899998531          2379


Q ss_pred             EEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          368 RIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       368 Rig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      |++++...|    ++|++++.+++++++...
T Consensus       466 rl~Ppl~it----~eeid~~~~~l~~al~~~  492 (504)
T PLN02760        466 MMSPPLIIT----PEEVDELISIYGKALKAT  492 (504)
T ss_pred             EEECCCCCC----HHHHHHHHHHHHHHHHHH
Confidence            999887777    999999999999988754

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.54  E-value=1.4e-11  Score=123.67  Aligned_cols=330  Identities=15%  Similarity=0.069  Sum_probs=177.9

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh--cCC
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP  109 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al--~~p  109 (447)
                      -.|.|.+++.+.+.+ +..+..+..   ..+...+    ..+++++++.-..+   ..+..+||++|+.+++...  ...
T Consensus        60 ~~p~v~~a~~~q~~~-~~~~~~~~~---~~~~~~~----la~~L~~~~~~~~~---~v~f~~SGseA~e~AlklAr~~tg  128 (433)
T PRK08117         60 RHPKVVQAIKEQADK-LMHGPSGVI---YYESILK----LAEELAEITPGGLD---CFFFSNSGAEAIEGALKLAKHVTK  128 (433)
T ss_pred             CCHHHHHHHHHHHHh-ccCcccccc---CCHHHHH----HHHHHHHhCCCCCC---EEEEeCcHHHHHHHHHHHHHHhcC
Confidence            468999998887754 222221211   1122222    33577777732222   1234589999999988743  222


Q ss_pred             CCEEEEecCCC-CcccCC---Cc--ccccccc-ccccceeEEEecccC---CCCC------CCCHHHHHHHhhh----hC
Q 013217          110 HDRIMGLDLPH-GGHLSH---GF--MTPKRRV-SGTSIYFESMPYRLD---ESTG------LVDYDMLEKTAIL----FR  169 (447)
Q Consensus       110 gd~Vl~~~~~~-~~~~~~---~~--~~~~~~~-~~~g~~~~~~~~~~~---~~~~------~id~~~l~~~~~~----~~  169 (447)
                      ..+|+...-.| |.+...   ..  ....... ... ..+..++++..   +...      .-|+++++++++.    .+
T Consensus       129 r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  207 (433)
T PRK08117        129 RPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLL-GSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEE  207 (433)
T ss_pred             CCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCC-CCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccCCCc
Confidence            35677766443 322110   00  0000000 000 00122222210   0000      0256777777643    24


Q ss_pred             CcEEEEcCC-CCCC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccC-CCCC
Q 013217          170 PKLIIAGAS-AYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLR-GPRG  239 (447)
Q Consensus       170 ~klii~~~~-~~~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~-Gp~g  239 (447)
                      +.+|++.+- ...+ ..+    +++++++|++||+++|+|++|. |+...+.. . ..++ ..|++  +++|.++ |.+.
T Consensus       208 ~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-G~gr~G~~~~~~~~gv~pDi~--t~sK~lg~G~pi  284 (433)
T PRK08117        208 VAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQT-GFGRTGEWFAAQTFGVVPDIM--TIAKGIASGLPL  284 (433)
T ss_pred             EEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchh-ccCccccchhHhhcCCCCCEe--ehhhhccCCCcc
Confidence            566776521 1222 445    8999999999999999999985 65333321 1 0111 24664  6669985 5566


Q ss_pred             ceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCC--cEeee
Q 013217          240 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG--YKLVS  317 (447)
Q Consensus       240 G~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~~~~  317 (447)
                      |+++.++      ++.+.+......++. +.+...+++..++++.+..++   ..+++.++.+++.+.|.+..  +.++.
T Consensus       285 gav~~~~------~i~~~~~~~~~~~T~-~~np~~~aaa~a~L~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~~~  354 (433)
T PRK08117        285 SAVVASK------ELMEQWPLGSHGTTF-GGNPVACAAALATLEVIKEEK---LLDNANEMGAYALERLEVLKEKHPVIG  354 (433)
T ss_pred             eeEEEcH------HHHhhccCCCCCCCC-CcCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHhcCCcee
Confidence            8888887      676665433222222 235555666666777665433   45666667777777776531  22221


Q ss_pred             --CCCCCeeEEecCCCC-----CCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHH
Q 013217          318 --GGSDNHLVLVDLRPM-----GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADF  390 (447)
Q Consensus       318 --~~~~~~~~~v~~~~~-----~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~  390 (447)
                        .+. ..+..+.+...     ......+.+.|.++||.+...   +.    ....+|+.++..++    ++|++++++.
T Consensus       355 ~vrg~-Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~---g~----~~~~lRl~p~~~~t----~~~i~~~~~~  422 (433)
T PRK08117        355 DVRGI-GLMIGIEIVDPDGEPDGDAVEKILDKCLEKGLLFYLC---GN----AGNVLRMIPPLTVT----KEEIDEGLDI  422 (433)
T ss_pred             eeecC-CcEEEEEEecCCCCcchHHHHHHHHHHHHCCCEEeec---CC----CCCEEEEeCCccCC----HHHHHHHHHH
Confidence              111 12223344221     111345667788899987431   11    13589999888777    9999999999


Q ss_pred             HHHHHHHH
Q 013217          391 IHEGVEIT  398 (447)
Q Consensus       391 i~~~l~~~  398 (447)
                      |.+++...
T Consensus       423 l~~~l~~~  430 (433)
T PRK08117        423 LDEALTEY  430 (433)
T ss_pred             HHHHHHHH
Confidence            99988643

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.53  E-value=1.8e-11  Score=122.54  Aligned_cols=331  Identities=15%  Similarity=0.029  Sum_probs=174.2

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh--cCC
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP  109 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al--~~p  109 (447)
                      -+|.+.+++.+.+.+. .  +.....+ +.+  ..+ +. .+++.+..+.+...  -.+.++||++|+..++...  ...
T Consensus        58 ~~~~i~~a~~~~~~~~-~--~~~~~~~-~~~--~~~-~l-a~~l~~~~~~~~~~--~~~f~~sGsea~e~Alklar~~~~  127 (425)
T PRK08088         58 LHPKVVAAVEAQLKKL-S--HTCFQVL-AYE--PYL-EL-CEKMNQKVPGDFAK--KTLLVTTGSEAVENAVKIARAATK  127 (425)
T ss_pred             CCHHHHHHHHHHHhhC-C--Ccccccc-CCH--HHH-HH-HHHHHHhCCCCCCC--EEEEeCCcHHHHHHHHHHHHHHhC
Confidence            3788888888877642 1  1111000 111  112 12 24566666543211  1345699999888776543  223


Q ss_pred             CCEEEEecCCCCcccCCCccccccccc-ccc-----ceeEEEecccCCCCCCC--CHHHHHHHhh----hhCCcEEEEcC
Q 013217          110 HDRIMGLDLPHGGHLSHGFMTPKRRVS-GTS-----IYFESMPYRLDESTGLV--DYDMLEKTAI----LFRPKLIIAGA  177 (447)
Q Consensus       110 gd~Vl~~~~~~~~~~~~~~~~~~~~~~-~~g-----~~~~~~~~~~~~~~~~i--d~~~l~~~~~----~~~~klii~~~  177 (447)
                      ..+|++.++.|.|.............. ..+     ..+..++++.+..+...  +++++++++.    ..++.+|++.+
T Consensus       128 r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~aavi~Ep  207 (425)
T PRK08088        128 RSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGVSEDDAIASIERIFKNDAAPEDIAAIIIEP  207 (425)
T ss_pred             CCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccccCccHHHHHHHHHHHHHhccCCCceEEEEECc
Confidence            456777777654442100000000000 000     00111222222111111  1556888775    23456777763


Q ss_pred             C-CCCC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC--cccEEEeCCCcccC-CCCCceEEeecCC
Q 013217          178 S-AYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLR-GPRGGMIFFKKDP  248 (447)
Q Consensus       178 ~-~~~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~--~~Di~~~s~~K~l~-Gp~gG~i~~~~~~  248 (447)
                      . ++++ ..+    +++|.++|+++|+++|+|+++. |+...+.. ..+.  +.+.-+.|++|.++ |.|.|++++++  
T Consensus       208 i~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~-g~g~~g~~-~~~~~~~~~pdi~s~sK~l~~G~rig~v~~~~--  283 (425)
T PRK08088        208 VQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQT-GAGRTGTL-FAMEQMGVAADLTTFAKSIAGGFPLAGVTGRA--  283 (425)
T ss_pred             ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCcch-hHHhhcCCCCCEEEEeccccCCCcceeeEecH--
Confidence            2 3333 233    7899999999999999999975 54322211 1111  11222456679984 66779999987  


Q ss_pred             cchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH----CCc-EeeeCCCCCe
Q 013217          249 VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----LGY-KLVSGGSDNH  323 (447)
Q Consensus       249 ~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~-~~~~~~~~~~  323 (447)
                          ++.+.+.........+ .+....++....++....+.   ..+++.+..+++.+.|.+    .+. ..+.+ . ..
T Consensus       284 ----~~~~~~~~~~~~~t~~-~~~~~~~a~~~~l~~~~~~~---~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~g-~-G~  353 (425)
T PRK08088        284 ----EVMDAIAPGGLGGTYA-GNPIACAAALAVLKVFEQEN---LLQKANALGEKLKDGLLAIAEKHPEIGDVRG-L-GA  353 (425)
T ss_pred             ----HHHhhcCCCCCCCCCC-cCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhCCCeEEEec-c-ce
Confidence                6777765543332333 34444555555666554333   344444444444444433    222 12222 2 34


Q ss_pred             eEEecCCCC-------CCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          324 LVLVDLRPM-------GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       324 ~~~v~~~~~-------~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      +.|+.+...       ......+.+.+.+.||.+.    |...   .++.||++++...+    ++|+++.++.|.+++.
T Consensus       354 ~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~~~----~~~~---~~~~iRl~~~~~~t----~~ei~~~i~~l~~~l~  422 (425)
T PRK08088        354 MIAIELFEDGDHSKPNAKLTAQIVARARDKGLILL----SCGP---YYNVLRILVPLTIE----DAQIRQGLEIIAQCFD  422 (425)
T ss_pred             EEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCEEe----cCCC---CCCEEEEECCCCcC----HHHHHHHHHHHHHHHH
Confidence            466666211       1124567777888998873    2211   13589999887666    9999999999998886


Q ss_pred             H
Q 013217          397 I  397 (447)
Q Consensus       397 ~  397 (447)
                      .
T Consensus       423 ~  423 (425)
T PRK08088        423 E  423 (425)
T ss_pred             h
Confidence            4

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.53  E-value=3.2e-11  Score=120.79  Aligned_cols=330  Identities=16%  Similarity=0.111  Sum_probs=173.8

Q ss_pred             CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc---
Q 013217           31 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---  107 (447)
Q Consensus        31 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~---  107 (447)
                      ...|.|.+++.+.+.+ ...+..   +....+    .+....+++.+++....+.   ....+||++|+.+++....   
T Consensus        62 h~~p~v~~ai~~ql~~-l~~~~~---~~~~~~----~~~~la~~l~~~~p~~~~~---v~f~~sGseA~e~AlklAr~~~  130 (442)
T PRK13360         62 HGRPEIVEAVRAQAGE-LDYAPA---FQMGHP----KAFELANRIAEIAPGGLNH---VFFTNSGSESVDTALKIALAYH  130 (442)
T ss_pred             CCCHHHHHHHHHHHHh-CCCccc---CCcCCH----HHHHHHHHHHHhCCCCCCE---EEEeCCcHHHHHHHHHHHHHHH
Confidence            3478999998877754 111111   001111    1112335677776322121   2346899999998876432   


Q ss_pred             ----CC-CCEEEEecCCCCcccCC-----CccccccccccccceeEEEecccCCCC--CCC--------CHHHHHHHhhh
Q 013217          108 ----KP-HDRIMGLDLPHGGHLSH-----GFMTPKRRVSGTSIYFESMPYRLDEST--GLV--------DYDMLEKTAIL  167 (447)
Q Consensus       108 ----~p-gd~Vl~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~i--------d~~~l~~~~~~  167 (447)
                          ++ ..+|+...-.|.|.-.-     +....+.........+..++++.+...  +..        ..+++++++..
T Consensus       131 ~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~  210 (442)
T PRK13360        131 RARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTL  210 (442)
T ss_pred             HhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHh
Confidence                12 35788887665443100     000000000000001122232211000  000        24577777753


Q ss_pred             h---CCcEEEEcCC-CCCC-CCC----hHHHHHHHHHhCCEEEEehhhh-ccccccccCCCCCC-cccEEEeCCCcccCC
Q 013217          168 F---RPKLIIAGAS-AYPR-DFD----YPRMRQIADAVGALLMMDMAHI-SGLVAASVVADPFK-YCDVVTTTTHKSLRG  236 (447)
Q Consensus       168 ~---~~klii~~~~-~~~~-~~~----~~~i~~ia~~~g~~livD~a~~-~g~~~~~~~~~~~~-~~Di~~~s~~K~l~G  236 (447)
                      .   ++.+|++.+. ...+ ..+    +++|+++|++||+++|+|++|. .|-........-.+ ..|++++  .|.|.|
T Consensus       211 ~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDivt~--gK~l~g  288 (442)
T PRK13360        211 HDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVTPDLLTC--AKGLTN  288 (442)
T ss_pred             cCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCceeee--eecccc
Confidence            2   3456666521 1122 445    8999999999999999999983 33222211000111 2588865  599964


Q ss_pred             C--CCceEEeecCCcchhhHHHHhhhc-------cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHH
Q 013217          237 P--RGGMIFFKKDPVLGVELESAINNA-------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASR  307 (447)
Q Consensus       237 p--~gG~i~~~~~~~~~~~~~~~i~~~-------~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~  307 (447)
                      .  +.|.+++++      ++.+.+...       ...++.+ .+...+++..++++.+.+++   +.++..++.++|.+.
T Consensus       289 G~~P~gav~~~~------~i~~~~~~~~~~~~~~~~~~T~~-g~pl~~aaa~a~L~~l~~~~---l~~~~~~~g~~l~~~  358 (442)
T PRK13360        289 GAIPMGAVFVSS------EIHDAFMQGPEAGIEFFHGYTYS-GHPLACAAALATLDLYEREG---LLTRAARLAPYWEDA  358 (442)
T ss_pred             CccceEEEEEcH------HHHHHhhcCCccccccccCCCCC-CCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHH
Confidence            2  345566666      666655421       1122223 35555666666788776544   456677777788887


Q ss_pred             HHHCC-cEeeeCCCCC-eeEEecCCCC--C--CCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCH
Q 013217          308 LVELG-YKLVSGGSDN-HLVLVDLRPM--G--IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSE  381 (447)
Q Consensus       308 L~~~g-~~~~~~~~~~-~~~~v~~~~~--~--~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~  381 (447)
                      |++.. +..+.+-... .+.-+.+.+.  +  .....+.+.|.++||.+...          .+.+|++++...|    +
T Consensus       359 l~~l~~~~~v~~vrG~Gl~~~~~l~~~~~~~~~~~~~~~~~l~~~Gvl~~~~----------~~~lr~~Ppl~~t----~  424 (442)
T PRK13360        359 LHSLRDAPHVIDIRNLGLVGAVELAPRDGKPGKRAYEVFLKCFEKGLMIRYT----------GDILALSPPLIIE----E  424 (442)
T ss_pred             HHHhhcCCCeeeeeccceEEEEEEecCCCCcchhHHHHHHHHHHCCcEEEec----------CCEEEEeCCCccC----H
Confidence            77632 2222110001 1111222211  1  12345667788899998531          2479999888777    9


Q ss_pred             HHHHHHHHHHHHHHHH
Q 013217          382 KEFVAIADFIHEGVEI  397 (447)
Q Consensus       382 ~di~~l~~~i~~~l~~  397 (447)
                      +|++++.+++.++++.
T Consensus       425 ~eid~~~~~l~~~l~~  440 (442)
T PRK13360        425 AQIDELFDILAQALKE  440 (442)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998863

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.53  E-value=3.3e-12  Score=119.16  Aligned_cols=324  Identities=18%  Similarity=0.224  Sum_probs=196.7

Q ss_pred             cCeeEe-------cCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC-----CCccce
Q 013217           21 KSLELI-------ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-----ENKWGV   88 (447)
Q Consensus        21 ~~i~l~-------~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~-----~~~~~~   88 (447)
                      +.+||-       .+..++=++|.+|-...+.....-.      |.+....+.+.+.   ..+-+||.+     ...+ +
T Consensus        27 ~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~~~~k~------Yl~i~G~~~f~~~---~~~llFG~d~~~l~~~Rv-~   96 (396)
T COG1448          27 NKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQEKTKN------YLPIEGLPEFLEA---VQKLLFGADSPALAEDRV-A   96 (396)
T ss_pred             CeeeeeeeeeeCCCCCcchhHHHHHHHHHhhccccccc------cCCcCCcHHHHHH---HHHHhcCCCcHHHHhhhH-h
Confidence            556764       2333556888888766665543222      3333334444432   233468855     2223 5


Q ss_pred             eeecCCcHHHHHHHHHHh--cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecc-cCCCCCCCCHHHHHHHh
Q 013217           89 NVQPLSGSPANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR-LDESTGLVDYDMLEKTA  165 (447)
Q Consensus        89 ~v~~~sGs~a~~~~~~al--~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~id~~~l~~~~  165 (447)
                      .+|..+||.|+..+..-+  ..|..+|.+++|..+-|..        .....|  +++..|+ .|.++..+|++.+.+.+
T Consensus        97 t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~--------If~~aG--l~v~~Y~Yyd~~~~~~df~~mla~L  166 (396)
T COG1448          97 TVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKA--------IFEAAG--LEVETYPYYDAETKGLDFDGMLADL  166 (396)
T ss_pred             heecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHH--------HHHhcC--CceeeeeccccccccccHHHHHHHH
Confidence            688899998887665444  5677789999999887732        223444  4444444 35566779999998877


Q ss_pred             hhhC-CcEEEEc-CCCCCC-C----CChHHHHHHHHHhCCEEEEehhhhccccccccCC--CCCC-----cc-cEEEeCC
Q 013217          166 ILFR-PKLIIAG-ASAYPR-D----FDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-----YC-DVVTTTT  230 (447)
Q Consensus       166 ~~~~-~klii~~-~~~~~~-~----~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~--~~~~-----~~-Di~~~s~  230 (447)
                      +... -.+|++. ..+||+ .    ..+++|.++.++.|.+.++|.|+ -|+-.. +..  .++.     +. -++++|+
T Consensus       167 ~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AY-QGF~~G-leeDa~~lR~~a~~~~~~lva~S~  244 (396)
T COG1448         167 KTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAY-QGFADG-LEEDAYALRLFAEVGPELLVASSF  244 (396)
T ss_pred             HhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhh-hhhccc-hHHHHHHHHHHHHhCCcEEEEehh
Confidence            6532 2455554 456665 2    23678999999999999999983 553222 111  1110     11 3788999


Q ss_pred             Cccc--CCCCCceE-EeecCCcchhhHHHHhhhc---cCCCCCCCCcHHHHHHHHHH-----HHHhcChhHHHHHHHHHH
Q 013217          231 HKSL--RGPRGGMI-FFKKDPVLGVELESAINNA---VFPGLQGGPHNHTIGGLAVC-----LKHAQSPEFKVYQNKVVS  299 (447)
Q Consensus       231 ~K~l--~Gp~gG~i-~~~~~~~~~~~~~~~i~~~---~~~~~~g~p~~~~~aal~~a-----l~~~~~~~~~~~~~~~~~  299 (447)
                      +|.|  .|-|.|.+ ++.+..    +...++...   ...+.+++|..+...-.+.-     |+..-..+..++++++.+
T Consensus       245 SKnfgLYgERVGa~~vva~~~----~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~  320 (396)
T COG1448         245 SKNFGLYGERVGALSVVAEDA----EEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILE  320 (396)
T ss_pred             hhhhhhhhhccceeEEEeCCH----HHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence            9986  47777543 333321    333333221   12234566666654444332     222222345678889999


Q ss_pred             HHHHHHHHHHHCC----cEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccc
Q 013217          300 NCRALASRLVELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMT  375 (447)
Q Consensus       300 ~~~~l~~~L~~~g----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~  375 (447)
                      .++.|.+.|++.+    |..+..  ...  ++.+  .|++.+++.+..+++||.+-.            ++ ||+...  
T Consensus       321 mR~~lv~~L~~~~~~~~f~~i~~--Q~G--MFsy--~Gls~~QV~rLree~~IY~v~------------sG-Ri~vaG--  379 (396)
T COG1448         321 MRQALVDALKALGAPRNFDFIIS--QRG--MFSY--TGLSPEQVDRLREEFGIYLVA------------SG-RINVAG--  379 (396)
T ss_pred             HHHHHHHHHHhhCCCcccchHhh--cCc--eeec--CCCCHHHHHHHHHhccEEEec------------CC-eeeecc--
Confidence            9999999998833    444432  122  2333  277899999999999999842            22 776654  


Q ss_pred             cCCCCHHHHHHHHHHHHHH
Q 013217          376 TRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       376 ~~g~~~~di~~l~~~i~~~  394 (447)
                         +++..|+++++.|.++
T Consensus       380 ---l~~~ni~~va~ai~~v  395 (396)
T COG1448         380 ---LNTSNIDYVAKAIAAV  395 (396)
T ss_pred             ---CChhhHHHHHHHHHhh
Confidence               4478999999999875

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.52  E-value=3e-11  Score=120.50  Aligned_cols=328  Identities=13%  Similarity=0.100  Sum_probs=174.9

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC-CCccceeeecCCcHHHHHHHHHHhc--C
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVYTAIL--K  108 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~-~~~~~~~v~~~sGs~a~~~~~~al~--~  108 (447)
                      -.|.+.+++...+... .  +.....+. .+  ..+  ...+++.+++... .+.   .+..+||++|+.+++....  .
T Consensus        57 ~~p~v~~ai~~ql~~~-~--~~~~~~~~-~~--~~~--~la~~l~~~~p~~~~~~---~~f~~sGseA~e~AlklAr~~t  125 (421)
T PRK09792         57 RHPDLVAAVEQQLQQF-T--HTAYQIVP-YE--SYV--TLAEKINALAPVSGQAK---TAFFTTGAEAVENAVKIARAHT  125 (421)
T ss_pred             CCHHHHHHHHHHHHhc-c--CcccCccC-CH--HHH--HHHHHHHHhCCCCCCce---EEEeCChHHHHHHHHHHHHHhc
Confidence            4788888888777642 1  11111011 11  111  1224566665422 111   2335799999998876442  2


Q ss_pred             CCCEEEEecCCCCcccCCCcc------ccccccccccceeEEEecccCCCCCC---CCHHHHHHHhhh----hCCcEEEE
Q 013217          109 PHDRIMGLDLPHGGHLSHGFM------TPKRRVSGTSIYFESMPYRLDESTGL---VDYDMLEKTAIL----FRPKLIIA  175 (447)
Q Consensus       109 pgd~Vl~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~~~~~~~~~~~~---id~~~l~~~~~~----~~~klii~  175 (447)
                      ...+|+...-.|.|.-.....      .........-..+..++++.+. .+.   -|++++++.+.+    .++.+|++
T Consensus       126 gr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~-~~~~~~~~~~~l~~~~~~~~~~~~iaavi~  204 (421)
T PRK09792        126 GRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDL-HGISTQDSLDAIERLFKSDIEAKQVAAIIF  204 (421)
T ss_pred             CCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccc-ccccHHHHHHHHHHHHHhccCCCceEEEEE
Confidence            335788877655443100000      0000000000012233443321 111   235788887762    35678888


Q ss_pred             cCCCCCC---CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCC---CC-cccEEEeCCCcccC-CCCCceEEe
Q 013217          176 GASAYPR---DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP---FK-YCDVVTTTTHKSLR-GPRGGMIFF  244 (447)
Q Consensus       176 ~~~~~~~---~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~---~~-~~Di~~~s~~K~l~-Gp~gG~i~~  244 (447)
                      .+..+++   ..+   +++|.++|++||+++|+|+++ .|+...+.. ..   ++ ..|++++  .|+|+ |.+.|++++
T Consensus       205 EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~-tg~gr~G~~-~a~~~~~~~pDi~t~--gK~l~~G~pigav~~  280 (421)
T PRK09792        205 EPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQ-SGFARTGKL-FAMDHYADKPDLMTM--AKSLAGGMPLSGVVG  280 (421)
T ss_pred             ccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccc-cCCCCCCch-hHHHhcCCCCcEEEe--ehhhcCCCceEEEEE
Confidence            7544332   335   789999999999999999996 444333311 11   11 3576555  59985 566788888


Q ss_pred             ecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC--CcEeeeCCCC-
Q 013217          245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVSGGSD-  321 (447)
Q Consensus       245 ~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~-  321 (447)
                      ++      ++.+.+......++.+ .+....++..+.++.+.+..   ..+++.+..+++.+.|++.  .+..+..... 
T Consensus       281 ~~------~i~~~~~~~~~~~T~~-gnpl~~aaa~a~l~~l~~~~---~~~~~~~~g~~l~~~l~~l~~~~p~v~~vrG~  350 (421)
T PRK09792        281 NA------NIMDAPAPGGLGGTYA-GNPLAVAAAHAVLNIIDKES---LCERANQLGQRLKNTLIDAKESVPAIAAVRGL  350 (421)
T ss_pred             cH------HHHhccCCCCcCCCCC-CCHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHhCCCcceeccc
Confidence            87      6776665432222333 23344444444666655433   3444555555555555431  1211211111 


Q ss_pred             CeeEEecCCCCC------CCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          322 NHLVLVDLRPMG------IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       322 ~~~~~v~~~~~~------~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      ..+.++.+....      .....+.+.+.++||.+...   +   + .+..||+.++...+    ++|+++++++|.+++
T Consensus       351 Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~---g---~-~~~~irl~P~l~i~----~~ei~~~~~~l~~~l  419 (421)
T PRK09792        351 GSMIAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTC---G---A-YGNVIRFLYPLTIP----DAQFDAAMKILQDAL  419 (421)
T ss_pred             ceEEEEEecCCccCCcchHHHHHHHHHHHHCCcEEeec---C---C-CCCEEEEeCCCcCC----HHHHHHHHHHHHHHH
Confidence            344566664321      12355677778899998421   1   1 13589999887566    999999999998887


Q ss_pred             H
Q 013217          396 E  396 (447)
Q Consensus       396 ~  396 (447)
                      .
T Consensus       420 ~  420 (421)
T PRK09792        420 S  420 (421)
T ss_pred             h
Confidence            4

>PRK12403 putative aminotransferase; Provisional

Probab=99.52  E-value=3.1e-11  Score=121.52  Aligned_cols=322  Identities=17%  Similarity=0.142  Sum_probs=167.0

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCccc-CchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc---
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYY-GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---  107 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~-~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~---  107 (447)
                      -.|.|.+++.+.+.+ +..+.   .++ ...+...+++    ++++++++...+   -.+..+||++|+.+++....   
T Consensus        71 ~hp~v~~A~~~q~~~-~~~~~---~~~~~~~~~~~~la----e~L~~~~p~~~~---~v~f~~SGseA~e~AiklAr~~~  139 (460)
T PRK12403         71 GRKDLAAAAARQMEQ-LPYYN---MFFHTTHPAVIELS----ELLFSLLPGHYS---HAIYTNSGSEANEVLIRTVRRYW  139 (460)
T ss_pred             CCHHHHHHHHHHHHh-CCCee---cccccCCHHHHHHH----HHHHHhCCCCcC---EEEEeCCcHHHHHHHHHHHHHHH
Confidence            369999998887764 22111   111 1122223333    567777763322   12446999999999887653   


Q ss_pred             ----CCCCEEE-EecCC-CCcccCCCccccccccccccce-----------eEEEecccC-CCCCC--------CCHHHH
Q 013217          108 ----KPHDRIM-GLDLP-HGGHLSHGFMTPKRRVSGTSIY-----------FESMPYRLD-ESTGL--------VDYDML  161 (447)
Q Consensus       108 ----~pgd~Vl-~~~~~-~~~~~~~~~~~~~~~~~~~g~~-----------~~~~~~~~~-~~~~~--------id~~~l  161 (447)
                          +++..++ ...-. ||..+.        .+++++..           +..++++.. ...+.        .+.+++
T Consensus       140 ~~~g~~~r~~ii~~~~~yHG~t~~--------~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l  211 (460)
T PRK12403        140 QVLGKPQKKIMIGRWNGYHGSTLA--------ATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQL  211 (460)
T ss_pred             HhhCCCCCcEEEEECCCcCcccHh--------hhhcCCCccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHH
Confidence                2444443 33333 332211        11111110           111221110 00000        113556


Q ss_pred             HHHhhh---hCCcEEEEcCC-CCCC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeC
Q 013217          162 EKTAIL---FRPKLIIAGAS-AYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTT  229 (447)
Q Consensus       162 ~~~~~~---~~~klii~~~~-~~~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s  229 (447)
                      ++.+.+   .++.+||+.+- ...+ ..+    +++++++|++||+++|+|++| .|+--.|.. . ..++ ..|++++ 
T Consensus       212 e~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~-tGfGRtG~~~a~e~~gv~PDiv~~-  289 (460)
T PRK12403        212 EEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVI-GGFGRTGEWFAHEHFGFEPDTLSI-  289 (460)
T ss_pred             HHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccc-cCCCcCchhhhhhhcCCCCCeEEE-
Confidence            655532   23456666521 2223 344    899999999999999999998 443222210 1 1111 2588874 


Q ss_pred             CCcccCCC--CCceEEeecCCcchhhHHHHhhhc--cC-CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHH-HHHHH
Q 013217          230 THKSLRGP--RGGMIFFKKDPVLGVELESAINNA--VF-PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVV-SNCRA  303 (447)
Q Consensus       230 ~~K~l~Gp--~gG~i~~~~~~~~~~~~~~~i~~~--~~-~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~-~~~~~  303 (447)
                       .|.|+|.  +.|.+++++      ++.+.+...  .+ .+.+-+.++..+++..++|+.+.+++   +.+++. ++.++
T Consensus       290 -gK~lggG~~Piga~v~~~------~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~~~---l~~~~~~~~g~~  359 (460)
T PRK12403        290 -AKGLTSGYVPMGGLVLSK------RIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRDEG---VVTRVKDDTGPY  359 (460)
T ss_pred             -cccccccccceEEEEECH------HHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHH
Confidence             5998643  345555666      666655321  11 11111235555666666787776544   355664 66777


Q ss_pred             HHHHHHHC--CcEeeeCCCC-CeeEEecCCCCC-----CC-----HHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEe
Q 013217          304 LASRLVEL--GYKLVSGGSD-NHLVLVDLRPMG-----ID-----GARVEKILDMASITLNKNSVPGDKSALVPGGIRIG  370 (447)
Q Consensus       304 l~~~L~~~--g~~~~~~~~~-~~~~~v~~~~~~-----~~-----~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig  370 (447)
                      |.+.|++.  ...++..-.. ..+.-+.+....     ..     ...+...+.+.|+.+...          .+.+|+.
T Consensus       360 l~~~L~~l~~~~~~i~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~----------~~~~~l~  429 (460)
T PRK12403        360 LQRCLREVFGDHPLVGEVQGAGLVAALQFAEDKATRKRFANENDLAWRCRTIGFEEGVIIRST----------LGRMIMA  429 (460)
T ss_pred             HHHHHHHHHhcCCCEEeEeecceEEEEEEccCccccccccchhHHHHHHHHHHHhCCEEEEec----------CCEEEEE
Confidence            77777541  2222221011 112223332110     01     123445567899998521          1358998


Q ss_pred             cCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          371 SPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       371 ~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      ++...|    ++|++++.+++++++...
T Consensus       430 Ppl~it----~~eid~~~~~l~~al~~~  453 (460)
T PRK12403        430 PALVAG----RAEIDELVDKTRIAVDRT  453 (460)
T ss_pred             CCCCCC----HHHHHHHHHHHHHHHHHH
Confidence            776666    999999999999999754

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=99.52  E-value=5.3e-11  Score=116.32  Aligned_cols=329  Identities=17%  Similarity=0.089  Sum_probs=177.5

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh--cCC
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP  109 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al--~~p  109 (447)
                      ..|.|.+|+.+.+..-.   +...++......++.     .+++.+++..+...  -....+||++||.+++...  ...
T Consensus        73 ~hP~Vv~Av~~q~~~~~---h~~~~~~~~e~~v~~-----ae~L~~~~p~~~~~--~~~f~~sGaeA~E~AiKiAr~~Tg  142 (447)
T COG0160          73 NHPRVVEAVKRQLAKLN---HTHTRDLYYEPYVEL-----AEKLTALAPGSGLK--KVFFGNSGAEAVEAAIKIARAYTG  142 (447)
T ss_pred             CCHHHHHHHHHHHHHhh---cccCCcccchhHHHH-----HHHHHHhCCcccCC--eEEecCCcHHHHHHHHHHHHHHhC
Confidence            37999999888765421   111122111111222     24566655542111  2345699999999988643  223


Q ss_pred             CCEEEEecCCCCcccCCCccccc--cccc-----cccceeEEEecccCCCC-C--------CCCHHHHHHHhhh-----h
Q 013217          110 HDRIMGLDLPHGGHLSHGFMTPK--RRVS-----GTSIYFESMPYRLDEST-G--------LVDYDMLEKTAIL-----F  168 (447)
Q Consensus       110 gd~Vl~~~~~~~~~~~~~~~~~~--~~~~-----~~g~~~~~~~~~~~~~~-~--------~id~~~l~~~~~~-----~  168 (447)
                      +..|+.+.-.|.|.- .+....+  +...     -....+..+||+..... +        .-..+.++..+..     .
T Consensus       143 r~~viaf~~afHG~T-~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~  221 (447)
T COG0160         143 RPGVIAFDGAFHGRT-LGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPE  221 (447)
T ss_pred             CCcEEEECCcccccc-hhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCC
Confidence            467887776654431 1100000  0000     00011233444432111 1        1123344553332     2


Q ss_pred             CCcEEEEcCC-CCCC-CC-C---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC----cccEEEeCCCcccCC-C
Q 013217          169 RPKLIIAGAS-AYPR-DF-D---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSLRG-P  237 (447)
Q Consensus       169 ~~klii~~~~-~~~~-~~-~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~----~~Di~~~s~~K~l~G-p  237 (447)
                      ++.++|+.+- ..++ .. +   ++++.++|++||+++|+|++| .|+--.|. .+.+.    ..|++|+|  |.++| .
T Consensus       222 ~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQ-tG~GRTG~-~fa~E~~gv~PDivt~a--K~ig~G~  297 (447)
T COG0160         222 EVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQ-TGFGRTGK-MFAFEHFGVEPDIVTLA--KSLGGGL  297 (447)
T ss_pred             ceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc-cCCCcccc-chhhhhcCCCCCEEEec--ccccCCC
Confidence            4667777632 2223 22 2   589999999999999999999 55544442 11222    36999988  99864 4


Q ss_pred             CCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH--CCcEe
Q 013217          238 RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE--LGYKL  315 (447)
Q Consensus       238 ~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~  315 (447)
                      +.|.++.++      ++.+ .......++.++ |...+++..+.|+.+.++   .+.++..+.-++|.++|.+  ..+++
T Consensus       298 Pl~avv~r~------ei~~-~~~g~~~~Tf~G-Npva~Aaa~AvL~vie~e---~L~~~a~~~G~~l~~~L~~l~~~~~~  366 (447)
T COG0160         298 PLSAVVGRA------EIMD-WPPGGHGGTFGG-NPVACAAALAVLDVIEEE---NLLERAAELGEYLRDRLEELQEKHPL  366 (447)
T ss_pred             ceeEEeccH------Hhcc-cCCcccCCCCCc-CHHHHHHHHHHHHHHHHc---cHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence            458888887      5655 333333333333 444444444466665544   3466666777777777765  23334


Q ss_pred             eeCCCCCee-EEecCCCC----CCC---HHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHH
Q 013217          316 VSGGSDNHL-VLVDLRPM----GID---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAI  387 (447)
Q Consensus       316 ~~~~~~~~~-~~v~~~~~----~~~---~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l  387 (447)
                      +.+-...-+ .-+.+...    .-+   ...+.+.+.++|+.+..+.       ...+.|||.+|..-+    ++++++.
T Consensus       367 IgdVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~Glil~~~G-------~~~nviRi~PPL~is----~e~~d~~  435 (447)
T COG0160         367 IGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFERGLLLLTCG-------PHGNVLRILPPLTIS----DEELDEG  435 (447)
T ss_pred             eecccccceEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCEEeccC-------CCCcEEEEeCCcccC----HHHHHHH
Confidence            443111112 22333211    012   2456777788998775421       124589999886666    9999999


Q ss_pred             HHHHHHHHHH
Q 013217          388 ADFIHEGVEI  397 (447)
Q Consensus       388 ~~~i~~~l~~  397 (447)
                      .++|.+++..
T Consensus       436 l~il~~al~~  445 (447)
T COG0160         436 LDILEEALKE  445 (447)
T ss_pred             HHHHHHHHHh
Confidence            9999998874

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.52  E-value=2.1e-11  Score=122.37  Aligned_cols=323  Identities=15%  Similarity=0.108  Sum_probs=177.0

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc----
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  107 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~----  107 (447)
                      -.|.|.+|+.+.+..- .  +.. +++. .+    ......+++.+++..+.+.   ...++||++|+.+++....    
T Consensus        99 ~~p~v~~Ai~~ql~~l-~--~~~-~~~~-~~----~~~~lae~L~~~~p~~~~~---v~f~~SGsEAve~AlklAr~~t~  166 (459)
T PRK11522         99 RNPVVVSAVQNQLAKQ-P--LHS-QELL-DP----LRAMLAKTLAALTPGKLKY---SFFCNSGTESVEAALKLAKAYQS  166 (459)
T ss_pred             CCHHHHHHHHHHHhhC-c--ccc-cccC-CH----HHHHHHHHHHHhCCCCCCE---EEEeCCchHHHHHHHHHHHHHhc
Confidence            3689999988877542 1  111 1111 11    1212234666665432221   2335899999998876432    


Q ss_pred             CCC-CEEEEecCCCCcccCCCccccccccccccce-eEEEecccCCCC---CCCCHHHHHHHhhh-----hCCcEEEEcC
Q 013217          108 KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDEST---GLVDYDMLEKTAIL-----FRPKLIIAGA  177 (447)
Q Consensus       108 ~pg-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~---~~id~~~l~~~~~~-----~~~klii~~~  177 (447)
                      +.| .+|+...-.|.|.-. +      .+..++.. +..-..+..+..   ...|.++++++++.     .++.+|++.+
T Consensus       167 ~~gr~~ii~~~~~yHG~t~-~------~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~iAavIvEp  239 (459)
T PRK11522        167 PRGKFTFIATSGAFHGKSL-G------ALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILEP  239 (459)
T ss_pred             cCCCcEEEEecCCCCCCcH-H------HhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhhccCCcEEEEEEec
Confidence            122 367777655433210 0      11111110 000000000000   12377888887753     1344666652


Q ss_pred             C-CCCC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccCCC--CCceEEeec
Q 013217          178 S-AYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRGP--RGGMIFFKK  246 (447)
Q Consensus       178 ~-~~~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~Gp--~gG~i~~~~  246 (447)
                      - ...+ ..+    ++++.++|++||+++|+|++| .|+-..|.. . .-.+ ..|++++  .|.|+|.  +.|.+++++
T Consensus       240 v~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~-tG~GRtG~~~a~e~~gv~PDivt~--gK~lggG~~Pigav~~~~  316 (459)
T PRK11522        240 IQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQ-TGMGRTGKMFACEHENVQPDILCL--AKALGGGVMPIGATIATE  316 (459)
T ss_pred             ccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccce-ecCCccchhhhhhccCCCCCEEEe--chhhhCCCccceeEEEcH
Confidence            1 2223 344    799999999999999999998 454222211 1 0011 2588865  5999652  345555655


Q ss_pred             CCcchhhHHHHhhhc--cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC--CcE-eeeCCC-
Q 013217          247 DPVLGVELESAINNA--VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYK-LVSGGS-  320 (447)
Q Consensus       247 ~~~~~~~~~~~i~~~--~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~-~~~~~~-  320 (447)
                            ++.+.+...  .+.++.++ ++..+++..++++.+.+++   ..+++.+..++|.+.|++.  .+. ++..-. 
T Consensus       317 ------~i~~~~~~~~~~~~~T~~g-np~~~Aaala~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~~i~~VrG  386 (459)
T PRK11522        317 ------EVFSVLFDNPFLHTTTFGG-NPLACAAALATINVLLEQN---LPAQAEQKGDYLLDGFRQLAREYPDLVQEARG  386 (459)
T ss_pred             ------HHHHHhccCCcccCCCCCC-CHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHHhCCCceeeEEe
Confidence                  565554321  11122222 4555555556788776544   4677778888888888763  232 221100 


Q ss_pred             CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          321 DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       321 ~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      ...+.-+.+.... ....+.+.|.++||.+... .      .....+|+.++...+    ++|++++++++.+++...
T Consensus       387 ~Gl~~giel~~~~-~~~~i~~~l~~~Gvl~~~~-~------~~~~~lr~~Ppl~~t----~~~id~~l~~l~~~l~~~  452 (459)
T PRK11522        387 KGMLMAIEFVDNE-IGYNFASEMFRQRVLVAGT-L------NNAKTIRIEPPLTLT----IEQCEQVLKAARKALAAM  452 (459)
T ss_pred             ceeEEEEEecCch-HHHHHHHHHHHCCeEEEec-C------CCCCEEEEECCccCC----HHHHHHHHHHHHHHHHHH
Confidence            1223334444321 2456778888899998532 1      123589999887777    999999999999998754

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.51  E-value=5.9e-11  Score=118.89  Aligned_cols=330  Identities=16%  Similarity=0.059  Sum_probs=176.8

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh--cCC
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP  109 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al--~~p  109 (447)
                      -.|.|.+++.+.+.+..   +....++. .+.  .+  ...+++.+++....+.   ...++||++|+.+++...  ...
T Consensus        58 ~~p~v~~Ai~~ql~~~~---~~~~~~~~-~~~--~~--~la~~L~~~~p~~~~~---v~f~~sGsEAve~AlklAr~~tg  126 (443)
T PRK08360         58 NNPRVVKAIKEQTDKLI---HYTPIYGF-PVE--PL--LLAEKLIEIAPGDNPK---VSFGLSGSDANDGAIKFARAYTK  126 (443)
T ss_pred             CCHHHHHHHHHHHHhcc---CccccccC-cHH--HH--HHHHHHHHhCCCCCCE---EEEcCCHHHHHHHHHHHHHHhcC
Confidence            37889998888776521   11111111 111  11  2234666766543221   234689999999887643  223


Q ss_pred             CCEEEEecCCCCccc-CCCcccccc-cc-cccc--ceeEEEecccCCC-CC--------CCCHHHHHHHhhh----hCCc
Q 013217          110 HDRIMGLDLPHGGHL-SHGFMTPKR-RV-SGTS--IYFESMPYRLDES-TG--------LVDYDMLEKTAIL----FRPK  171 (447)
Q Consensus       110 gd~Vl~~~~~~~~~~-~~~~~~~~~-~~-~~~g--~~~~~~~~~~~~~-~~--------~id~~~l~~~~~~----~~~k  171 (447)
                      ..+|+...-.|.|.- ......... .. ...+  ..+..++++.... .+        .-+.+.+++.+..    .+++
T Consensus       127 r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iA  206 (443)
T PRK08360        127 RRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGVA  206 (443)
T ss_pred             CCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhccCCCCeE
Confidence            457777664443321 000000000 00 0000  0112223221000 00        0234456666642    3678


Q ss_pred             EEEEcCCCCC-C-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-CC-CCC-cccEEEeCCCcccC-CCCCce
Q 013217          172 LIIAGASAYP-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-AD-PFK-YCDVVTTTTHKSLR-GPRGGM  241 (447)
Q Consensus       172 lii~~~~~~~-~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~~-~~~-~~Di~~~s~~K~l~-Gp~gG~  241 (447)
                      +|++.+..++ + ..+    +++|.++|++||+++|+|++|. |+...+.. .. ..+ ..|++++  +|.++ |.+.|+
T Consensus       207 Avi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~gr~G~~~a~~~~~~~pDiitl--sK~l~~G~piga  283 (443)
T PRK08360        207 ALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQS-GLGRTGKWFAIEHFGVEPDIITL--GKPLGGGLPISA  283 (443)
T ss_pred             EEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCccchhhhhcCCCCCEEEe--cccccCCceeEE
Confidence            8888743233 2 222    7899999999999999999974 54333321 10 111 2577755  79984 567799


Q ss_pred             EEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC--CcEeeeCC
Q 013217          242 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVSGG  319 (447)
Q Consensus       242 i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~  319 (447)
                      +++++      ++.+.+.......+.++ +....++..++++.+.+++   ..+++.+..++|.+.|++.  ...++..-
T Consensus       284 v~~~~------~i~~~~~~~~~~~T~~~-~p~~~aaa~a~l~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~v~~v  353 (443)
T PRK08360        284 TIGRA------EIMDSLPPLAHAFTLSG-NPVASAAALAVIEEIEEKN---LLKRAEKLGNYTKKRLEEMKKKHELIGDV  353 (443)
T ss_pred             EEEcH------HHHhhhcCCCCCCCCCc-CHHHHHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHHHHHhCCCeeee
Confidence            99887      67776654322222232 3333555555777765443   4566666777777777552  22222211


Q ss_pred             C-CCeeEEecCCCCC----C---CHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217          320 S-DNHLVLVDLRPMG----I---DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  391 (447)
Q Consensus       320 ~-~~~~~~v~~~~~~----~---~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i  391 (447)
                      . ...++-+.+....    -   ....+...|.++||.+...         ....+|+.++..++    ++|++++.+++
T Consensus       354 rg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---------~~~~lr~~P~l~~t----~~~id~~~~~l  420 (443)
T PRK08360        354 RGIGLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTFF---------SGNVLRIQPPLTIE----KEVLDEGLDIL  420 (443)
T ss_pred             eccceEEEEEEecCCcccCccHHHHHHHHHHHHHCCeEEeec---------CCCEEEEeCCCCCC----HHHHHHHHHHH
Confidence            1 1112223332110    0   1235667788899998531         13579999888777    99999999999


Q ss_pred             HHHHHHH
Q 013217          392 HEGVEIT  398 (447)
Q Consensus       392 ~~~l~~~  398 (447)
                      .+++...
T Consensus       421 ~~~l~~~  427 (443)
T PRK08360        421 EEAIEDV  427 (443)
T ss_pred             HHHHHHH
Confidence            9999754

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.50  E-value=3.3e-11  Score=117.33  Aligned_cols=305  Identities=14%  Similarity=0.115  Sum_probs=171.9

Q ss_pred             CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh-cCC
Q 013217           31 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKP  109 (447)
Q Consensus        31 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al-~~p  109 (447)
                      .-.|.+.+++.+.+.+-.   +.+..|.  .+...+++    ++++++++.+.     .+.++||++|+.+++... ..+
T Consensus        40 h~~p~v~~ai~~ql~~~~---~~~~~~~--~~~~~~la----~~l~~~~~~~~-----v~~~~SGseA~e~Alklar~~~  105 (364)
T PRK04013         40 HNHPEWVEEMSEQLEKLV---VAGPMFE--HEEKEEML----EELSKWVNYEY-----VYMGNSGTEAVEAALKFARLYT  105 (364)
T ss_pred             CCCHHHHHHHHHHHHhcC---CccCCcC--CHHHHHHH----HHHHhhcCCCE-----EEEeCchHHHHHHHHHHHHHHh
Confidence            346899999988776521   1111121  22222333    56777776653     244699999999988765 334


Q ss_pred             C-CEEEEecCCCCcccCCCccccccccccccc-----eeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCC-CCC
Q 013217          110 H-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-----YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-YPR  182 (447)
Q Consensus       110 g-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~-~~~  182 (447)
                      | ++|++....|.|.....       +...+.     .+.....++... ...|++.+++.+.+ ++.+|++.+.. ..+
T Consensus       106 gr~~Ii~~~~syHG~t~~~-------ls~~~~~~~~~~~~p~~~~~~~~-~~~d~~~l~~~i~~-~~aAvivEpi~g~gG  176 (364)
T PRK04013        106 GRKEIIAMTNAFHGRTMGA-------LSATWKPKYREDFEPLVPGFKHI-PFNDVEAAKEAITK-ETAAVIFEPIQGEGG  176 (364)
T ss_pred             CCCEEEEECCccccCchhh-------ccCCCCcccccCCCCCCCCcEEe-cCCCHHHHHHHhcC-CcEEEEEcCCcCCCC
Confidence            5 89999887655432111       111110     011000001000 12378889988875 78888887422 222


Q ss_pred             --CCC---hHHHHHHHHHhCCEEEEehhhhccccccccC-CC-CCC-cccEEEeCCCcccCC-CCCceEEeecCCcchhh
Q 013217          183 --DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVV-AD-PFK-YCDVVTTTTHKSLRG-PRGGMIFFKKDPVLGVE  253 (447)
Q Consensus       183 --~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~~-~~~-~~Di~~~s~~K~l~G-p~gG~i~~~~~~~~~~~  253 (447)
                        ..|   ++++.++|++||+++|.|++|. |+ ..|.. .. -+. ..|+++++  |.++| .+.|.++.+.      +
T Consensus       177 ~~~~~~~yl~~lr~lc~~~gillI~DEv~t-G~-RtG~~~a~~~~gv~PDiv~~g--K~lggG~P~~a~~~~~------~  246 (364)
T PRK04013        177 IVPAKEEFVKTLRDLTEDVGALLIADEVQS-GL-RTGKFLAIEHYKVEPDIVTMG--KGIGNGVPVSLTLTNF------D  246 (364)
T ss_pred             CcCCCHHHHHHHHHHHHHcCCEEEEechhh-cC-CCCchhHHHhcCCCCCEEEec--ccccCCceeEEEEecc------c
Confidence              345   8999999999999999999984 55 33321 10 111 36888885  99854 3346666665      3


Q ss_pred             HHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCC
Q 013217          254 LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMG  333 (447)
Q Consensus       254 ~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~  333 (447)
                      +    ......+++ +.++..+++..+.++.+.++++.+.+++.      + +.+...-+.-+.+ . .-+.-+.+..  
T Consensus       247 ~----~~~~~~~T~-~gnp~~~aaa~a~l~~i~~~~l~~~~~~~------l-~~l~~~~v~~vRG-~-Gl~~gve~~~--  310 (364)
T PRK04013        247 V----ERGKHGSTF-GGNPLACKAVAVTLRILRRERLVEKAGEK------F-IEIKGERVVTTRG-R-GLMIGIVLKK--  310 (364)
T ss_pred             c----cCCCcCCCC-CcCHHHHHHHHHHHHHHHhccHHHHHHHH------H-HHhccCcceeeee-C-cEEEEEEeCC--
Confidence            3    111122222 23455555555577777665543322221      2 2332211111111 1 1122234432  


Q ss_pred             CCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          334 IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       334 ~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                       ....+.+.+.++|+.+...         ....+|+.++...+    ++|++++.++|.+++...
T Consensus       311 -~~~~i~~~~~~~Gll~~~~---------g~~vlr~~Ppl~it----~~~i~~~~~~l~~~l~~~  361 (364)
T PRK04013        311 -PVGKYVEELQNRGYLVHTA---------GQRVIRLLPPLIIS----KDTMEEAKSAIEGVINDI  361 (364)
T ss_pred             -cHHHHHHHHHhCCcEEeeC---------CCCEEEEeCCcccC----HHHHHHHHHHHHHHHHHH
Confidence             2356777888899998531         12479998887666    999999999999998743

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=99.50  E-value=1.2e-10  Score=111.83  Aligned_cols=318  Identities=17%  Similarity=0.112  Sum_probs=180.2

Q ss_pred             CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh--cCCC
Q 013217           33 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKPH  110 (447)
Q Consensus        33 ~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al--~~pg  110 (447)
                      +|.|.+|+.+.+.+..+.|-|..           +|-...+.+.+++..-.  . + -.++|||+|.+.+++.-  .-..
T Consensus        71 ~p~V~~Av~~~l~~G~~fg~Pte-----------~Ei~~Aell~~~~p~~e--~-v-rfvnSGTEAtmsAiRlARa~TgR  135 (432)
T COG0001          71 HPAVVEAVQEQLERGLSFGAPTE-----------LEVELAELLIERVPSIE--K-V-RFVNSGTEATMSAIRLARAYTGR  135 (432)
T ss_pred             CHHHHHHHHHHHHhcCCCCCCCH-----------HHHHHHHHHHHhcCccc--E-E-EEecchhHHHHHHHHHHHHhhCC
Confidence            68899999998888665555442           33334467888877622  1 2 22589999988877643  2345


Q ss_pred             CEEEEecCCCCcccCCCcccccccc------ccccce----eEEEecccCCCCCCCCHHHHHHHhhhh--CCcEEEEcC-
Q 013217          111 DRIMGLDLPHGGHLSHGFMTPKRRV------SGTSIY----FESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGA-  177 (447)
Q Consensus       111 d~Vl~~~~~~~~~~~~~~~~~~~~~------~~~g~~----~~~~~~~~~~~~~~id~~~l~~~~~~~--~~klii~~~-  177 (447)
                      |+|+.+.-.|.||.........+..      ...|..    -.++.++      .-|++.+++++++.  +...||+.+ 
T Consensus       136 ~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~------yND~~al~~~~~~~g~~IAaVIvEPv  209 (432)
T COG0001         136 DKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLP------YNDLEALEEAFEEYGDDIAAVIVEPV  209 (432)
T ss_pred             CeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEec------CCCHHHHHHHHHHcCCcEEEEEeccc
Confidence            8999888777666321110000000      000100    0011111      24899999999875  456677762 


Q ss_pred             -CCCCCCCC----hHHHHHHHHHhCCEEEEehhhhcccccc-ccCCCCCC-cccEEEeCCCcccC-CCCCceEEeecCCc
Q 013217          178 -SAYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAA-SVVADPFK-YCDVVTTTTHKSLR-GPRGGMIFFKKDPV  249 (447)
Q Consensus       178 -~~~~~~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~-~~~~~~~~-~~Di~~~s~~K~l~-Gp~gG~i~~~~~~~  249 (447)
                       .|.+.+.|    ++.|+++|+++|+++|.|++. .|+-.. +....-+. ..|+.+.+  |.++ |.+.|.+.+++   
T Consensus       210 ~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEVi-TGFR~~~gGaq~~~gi~PDlttlG--KiIGGGlP~ga~gGr~---  283 (432)
T COG0001         210 AGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVI-TGFRVALGGAQGYYGVEPDLTTLG--KIIGGGLPIGAFGGRA---  283 (432)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecch-hhcccCCcccccccCcCcchhhhh--hhhcCCcceeeeccHH---
Confidence             23222222    589999999999999999996 333211 11111111 25777766  9885 45668888888   


Q ss_pred             chhhHHHHhhhccCCCCCCC--CcHHHHHHHHHHHHHhcC-hhHHHHHHHHHHHHHHHHHHHHH----CCcEeeeCCCCC
Q 013217          250 LGVELESAINNAVFPGLQGG--PHNHTIGGLAVCLKHAQS-PEFKVYQNKVVSNCRALASRLVE----LGYKLVSGGSDN  322 (447)
Q Consensus       250 ~~~~~~~~i~~~~~~~~~g~--p~~~~~aal~~al~~~~~-~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~~~  322 (447)
                         ++.+.+...-.-+..||  -|...++|-.++++.+.+ ++   ..+++.+..+.|++.|++    .|+++......+
T Consensus       284 ---eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~~---~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~~~gs  357 (432)
T COG0001         284 ---EIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEEG---VYERLDALGERLAEGLRAAAERHGIPLTVNRVGS  357 (432)
T ss_pred             ---HHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeecc
Confidence               78887655321111122  245566666678887765 22   245556666666666544    676654432233


Q ss_pred             eeEEe--cCCCCCC------CH---HHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217          323 HLVLV--DLRPMGI------DG---ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  391 (447)
Q Consensus       323 ~~~~v--~~~~~~~------~~---~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i  391 (447)
                      .+.+.  +....+.      +.   ..+...|.+.||.+.    |++   +.  ..=+|  ..++    ++|+++..+++
T Consensus       358 m~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~GV~l~----ps~---~e--a~flS--~aht----e~di~~~~~a~  422 (432)
T COG0001         358 MFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNRGVYLA----PSQ---FE--AGFLS--TAHT----EEDIDRTLEAA  422 (432)
T ss_pred             eEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHhCCcccC----Ccc---cc--ceeee--cccC----HHHHHHHHHHH
Confidence            33222  2111110      11   123346677899873    222   10  11222  2344    99999999999


Q ss_pred             HHHHHHH
Q 013217          392 HEGVEIT  398 (447)
Q Consensus       392 ~~~l~~~  398 (447)
                      .++++..
T Consensus       423 ~~~~~~~  429 (432)
T COG0001         423 DEAFKEL  429 (432)
T ss_pred             HHHHHHh
Confidence            9887653

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.49  E-value=2.2e-11  Score=121.87  Aligned_cols=328  Identities=15%  Similarity=0.086  Sum_probs=177.8

Q ss_pred             cCeeEecCC--C---CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCc
Q 013217           21 KSLELIASE--N---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG   95 (447)
Q Consensus        21 ~~i~l~~~~--n---~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sG   95 (447)
                      ..|++..+.  .   ..+|.+.+++.+.+.+..  .+     +...+    .+....+++.+++. ..+.   ...++||
T Consensus        51 ~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~~~--~~-----~~~~~----~~~~la~~L~~~~~-~~~~---v~~~~sG  115 (426)
T PRK00062         51 EYIDYVGSWGPMILGHAHPEVVEAVIEAAEKGL--SF-----GAPTE----LEVELAELVIELVP-SIEM---VRMVNSG  115 (426)
T ss_pred             EEEEcccchhhhhcCCCCHHHHHHHHHHHHhCC--cC-----CCCCH----HHHHHHHHHHHhCC-CCCE---EEEecCH
Confidence            345665432  1   457899999888776521  11     11111    11122346666552 1222   2335889


Q ss_pred             HHHHHHHHHHhc--CCCCEEEEecCCCCcccC-CCcccccccc----cccccee-----EEEecccCCCCCCCCHHHHHH
Q 013217           96 SPANFEVYTAIL--KPHDRIMGLDLPHGGHLS-HGFMTPKRRV----SGTSIYF-----ESMPYRLDESTGLVDYDMLEK  163 (447)
Q Consensus        96 s~a~~~~~~al~--~pgd~Vl~~~~~~~~~~~-~~~~~~~~~~----~~~g~~~-----~~~~~~~~~~~~~id~~~l~~  163 (447)
                      ++|+..++....  ..+++|+..+..|.|+.. ..........    ...+...     ....++      ..|++++++
T Consensus       116 seA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~  189 (426)
T PRK00062        116 TEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAP------YNDLEAVEE  189 (426)
T ss_pred             HHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcC------CCCHHHHHH
Confidence            999999888653  236789988887665420 0000000000    0000000     001111      147899998


Q ss_pred             Hhhh--hCCcEEEEc-CCCCCC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-CCCCC-cccEEEeCCCcc
Q 013217          164 TAIL--FRPKLIIAG-ASAYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-ADPFK-YCDVVTTTTHKS  233 (447)
Q Consensus       164 ~~~~--~~~klii~~-~~~~~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~~~~~-~~Di~~~s~~K~  233 (447)
                      .+..  .++.+|++. ..++.+ ..+    +++|.++|++||+++|+|++|. |+...+.. ..-++ ..|++  +++|.
T Consensus       190 ~i~~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-G~r~g~~~~~~~~~~~pDi~--~~gK~  266 (426)
T PRK00062        190 LFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMT-GFRVALGGAQGYYGVTPDLT--TLGKI  266 (426)
T ss_pred             HHHhCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechh-ccccCCccHHHHhCCCcchH--hhhhH
Confidence            8854  255677776 222333 445    7999999999999999999984 65222111 00011 14654  55699


Q ss_pred             cC-CCCCceEEeecCCcchhhHHHHhhhc--cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH
Q 013217          234 LR-GPRGGMIFFKKDPVLGVELESAINNA--VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE  310 (447)
Q Consensus       234 l~-Gp~gG~i~~~~~~~~~~~~~~~i~~~--~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~  310 (447)
                      ++ |.+.|++++++      ++.+.+...  ...+..-+.+....++..++++.+...   ++.+++.+..+++++.|++
T Consensus       267 l~~G~p~ga~~~~~------~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~---~~~~~~~~~~~~~~~~l~~  337 (426)
T PRK00062        267 IGGGLPVGAFGGRR------EIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEP---GFYEELEALTKRLAEGLKE  337 (426)
T ss_pred             hhCCCcceeeeEHH------HHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHH
Confidence            85 55678888877      677776421  111111123445555555677776543   3466666777777777654


Q ss_pred             ----CCcEeeeCCCCCeeEEecCCCCCC---------C---HHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCcc
Q 013217          311 ----LGYKLVSGGSDNHLVLVDLRPMGI---------D---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAM  374 (447)
Q Consensus       311 ----~g~~~~~~~~~~~~~~v~~~~~~~---------~---~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~  374 (447)
                          .++..-..+. ..+.-+.+.+...         +   ...+.+.|.++||.+...    .     ...+++.  ..
T Consensus       338 ~~~~~~~~~~vrg~-G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv~v~~~----~-----~~~~~~~--~~  405 (426)
T PRK00062        338 AAKKAGIPLTVNRV-GSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDEGVYLAPS----Q-----FEAGFVS--AA  405 (426)
T ss_pred             HHHHcCCceEEEEe-cceEEEEEecCCCcchhhhccccHHHHHHHHHHHHHCCeEeecC----C-----cCceeee--cc
Confidence                3543211111 1222222221100         1   245777888899998532    1     1235553  33


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHH
Q 013217          375 TTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       375 ~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      .+    ++|++++.+++++++..
T Consensus       406 ~t----~~ei~~~~~~l~~~l~~  424 (426)
T PRK00062        406 HT----DEDIEKTLEAARKAFAA  424 (426)
T ss_pred             CC----HHHHHHHHHHHHHHHHh
Confidence            44    99999999999988863

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=99.49  E-value=7.2e-12  Score=122.80  Aligned_cols=293  Identities=23%  Similarity=0.265  Sum_probs=186.5

Q ss_pred             HHHHHHcCCCCCccceeeecCCcHHH---HHHHHHHhc-CCCC----EEEEecCCCCcccCCCccccccccccccceeEE
Q 013217           73 KRALAAFNLDENKWGVNVQPLSGSPA---NFEVYTAIL-KPHD----RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFES  144 (447)
Q Consensus        73 ~~~~~~~g~~~~~~~~~v~~~sGs~a---~~~~~~al~-~pgd----~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  144 (447)
                      ++++++.|.+.    +.+|+.||+++   -..++++.+ ..|+    ..+++.-.||-+..        ...+.|  .++
T Consensus       589 ~~Lc~iTG~D~----~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPA--------SA~Mag--mkv  654 (1001)
T KOG2040|consen  589 KDLCEITGFDS----FSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPA--------SAAMAG--MKV  654 (1001)
T ss_pred             HHhheeecccc----eeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChh--------hHHhcC--CEE
Confidence            68999999987    68999999844   344555553 3332    24455444554321        223444  578


Q ss_pred             EecccCCCCCCCCHHHHHHHhhhhCC--cEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhh---ccccccccCC
Q 013217          145 MPYRLDESTGLVDYDMLEKTAILFRP--KLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHI---SGLVAASVVA  217 (447)
Q Consensus       145 ~~~~~~~~~~~id~~~l~~~~~~~~~--klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~---~g~~~~~~~~  217 (447)
                      ++++++ .+|.||+.+|++..++++-  ..+.++.|+.-+  .-++++++++.++||--|..|+|.-   .|+.      
T Consensus       655 vpV~~~-~~G~id~~dLk~kaekh~~~Laa~MvTYPST~GvfE~~i~d~cd~iHehGGQVYlDGANMNAqVGlc------  727 (1001)
T KOG2040|consen  655 VPVGCD-ANGNIDMVDLKAKAEKHKDNLAALMVTYPSTHGVFEEGIDDICDIIHEHGGQVYLDGANMNAQVGLC------  727 (1001)
T ss_pred             EEeecc-CCCCccHHHHHHHHHHhhhhhheeEEecccccccccccHHHHHHHHHhcCCEEEecCCCccceeccc------
Confidence            888887 5789999999999887643  456666555444  4579999999999999999999853   2332      


Q ss_pred             CCCC-cccEEEeCCCcccCC------CCCceEEeecCCcchhhHHHHhhh--ccCCC----------CCCCCc-HHHHHH
Q 013217          218 DPFK-YCDVVTTTTHKSLRG------PRGGMIFFKKDPVLGVELESAINN--AVFPG----------LQGGPH-NHTIGG  277 (447)
Q Consensus       218 ~~~~-~~Di~~~s~~K~l~G------p~gG~i~~~~~~~~~~~~~~~i~~--~~~~~----------~~g~p~-~~~~aa  277 (447)
                      .|-+ ++|+.--..||+|+-      |..|-|.+++      .+...+..  .+.++          ....|. ...+..
T Consensus       728 ~pGd~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~------HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILp  801 (1001)
T KOG2040|consen  728 RPGDIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK------HLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALILP  801 (1001)
T ss_pred             CCccccccceeecccceeeecCCCCCCCCCccchhh------hccccCCCCCccCCCCCCCCCCccceeccCCCcceeeh
Confidence            2222 589999999999853      3336677766      33322211  11110          011111 011222


Q ss_pred             H-HHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeee-C--CCCCeeEEecCCCC----CCCHHHHHHHHhhcCeE
Q 013217          278 L-AVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVS-G--GSDNHLVLVDLRPM----GIDGARVEKILDMASIT  349 (447)
Q Consensus       278 l-~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~--~~~~~~~~v~~~~~----~~~~~~~~~~L~~~gI~  349 (447)
                      + ++-++++...|+++-.+-..-|+++++++|+.. ++++. +  +...|-+++|+++.    +++..++.++|.++|+.
T Consensus       802 ISwaYikmMG~~GL~~as~~AiLNaNYMakRLe~h-Ykil~~~~~~~vaHEFIlD~r~fK~~agieavDvAKRL~DYgFH  880 (1001)
T KOG2040|consen  802 ISWAYIKMMGSGGLKDASKIAILNANYMAKRLESH-YKILFRGENGLVAHEFILDLRPFKKTAGIEAVDVAKRLMDYGFH  880 (1001)
T ss_pred             hHHHHHHHhcccccchhhHHHhhhhHHHHHHHhhc-cceeEecCCcceeeeeeeechhhccccCCcHHHHHHHHHhccCC
Confidence            2 333566666677777777889999999999884 44443 2  34567788898763    57788999999999998


Q ss_pred             EccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 013217          350 LNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKK  403 (447)
Q Consensus       350 v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~~~~~  403 (447)
                      .-..++|      .++.+-|-...    +-+.+|+|++++++-.+-++...+++
T Consensus       881 aPTmswP------V~gtLMIEPTE----SE~k~ElDRfcdAliSIreEI~~ie~  924 (1001)
T KOG2040|consen  881 APTMSWP------VAGTLMIEPTE----SEDKAELDRFCDALISIREEIAQIEE  924 (1001)
T ss_pred             CCccccc------cCCceEeccCc----cccHHHHHHHHHHHHHHHHHHHHHHc
Confidence            6443333      23455554333    33488999999988666665555543

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.48  E-value=7.7e-11  Score=118.14  Aligned_cols=321  Identities=16%  Similarity=0.116  Sum_probs=173.1

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc----
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  107 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~----  107 (447)
                      -.|.|.+++.+.+.+- ..+.. .. + ..+   ... ...+++.+++....+.   ....+||++|+.+++....    
T Consensus        66 ~~p~v~~ai~~ql~~l-~~~~~-~~-~-~~~---~~~-~la~~L~~~~p~~~~~---v~f~~sGseAve~AlklAr~~~~  134 (445)
T PRK09221         66 GRPEIVEAVARQAATL-DYAPA-FQ-M-GHP---LAF-ELAERLAELAPGGLDH---VFFTNSGSESVDTALKIALAYHR  134 (445)
T ss_pred             CCHHHHHHHHHHHHhc-cCccc-cc-c-CCH---HHH-HHHHHHHHhCCCCCCE---EEEeCCcHHHHHHHHHHHHHHHH
Confidence            4788999888777541 11111 11 1 111   111 2235666776422221   2335899999998876432    


Q ss_pred             --C-C-CCEEEEecCCCCcccCCCcccccccccccc------------ceeEEEecccCCCC--CC--------CCHHHH
Q 013217          108 --K-P-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTS------------IYFESMPYRLDEST--GL--------VDYDML  161 (447)
Q Consensus       108 --~-p-gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~--~~--------id~~~l  161 (447)
                        . + ..+|+...-.|.|.-. +      .+...+            ..+..++++.+...  +.        -..+++
T Consensus       135 ~~g~~~r~~ii~~~~~yHG~t~-g------als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  207 (445)
T PRK09221        135 ARGQGTRTRLIGRERGYHGVGF-G------GISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDL  207 (445)
T ss_pred             hcCCCCCcEEEEECCCcCccch-h------hhccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHH
Confidence              1 2 3578887765443310 0      000111            00122222210000  00        113577


Q ss_pred             HHHhhhh---CCcEEEEcCC-CCCC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC--CCCCC-cccEEEeC
Q 013217          162 EKTAILF---RPKLIIAGAS-AYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTT  229 (447)
Q Consensus       162 ~~~~~~~---~~klii~~~~-~~~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~--~~~~~-~~Di~~~s  229 (447)
                      +++++..   ++.+|++.+. ...+ ..+    ++++.++|+++|+++|+|++|. |+-..|..  ..-++ ..|+++++
T Consensus       208 ~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~t-G~GRtG~~~~~~~~gv~PDi~~~g  286 (445)
T PRK09221        208 ERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVIT-GFGRLGAAFAAERFGVTPDIITFA  286 (445)
T ss_pred             HHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhh-CCCcCchhhHHHhcCCCCCEEEec
Confidence            7777532   3456776631 1223 445    8999999999999999999984 43211110  00011 24887665


Q ss_pred             CCcccCC--CCCceEEeecCCcchhhHHHHhhhc------c-CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHH
Q 013217          230 THKSLRG--PRGGMIFFKKDPVLGVELESAINNA------V-FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN  300 (447)
Q Consensus       230 ~~K~l~G--p~gG~i~~~~~~~~~~~~~~~i~~~------~-~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~  300 (447)
                        |.++|  .+.|.+++++      ++.+.+...      . ..++.++ +...+++..++++.+.+++   +.++..+.
T Consensus       287 --K~l~gG~~Pi~av~~~~------~i~~~~~~~~~~~~~~~~~~T~~~-~pl~~aaa~a~L~~i~~~~---l~~~~~~~  354 (445)
T PRK09221        287 --KGLTNGAIPMGAVIASD------EIYDAFMQGPEYAIEFFHGYTYSA-HPVACAAGLATLDIYREED---LFERAAEL  354 (445)
T ss_pred             --cccccCcccceeeEEcH------HHHHhhccCcccccccccccCCCc-CHHHHHHHHHHHHHHHhcc---HHHHHHHH
Confidence              98854  3466777776      666655321      1 1122332 4444555455777765443   46777788


Q ss_pred             HHHHHHHHHHC-CcEeeeCCCCC-eeEEecCCCC----CCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCcc
Q 013217          301 CRALASRLVEL-GYKLVSGGSDN-HLVLVDLRPM----GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAM  374 (447)
Q Consensus       301 ~~~l~~~L~~~-g~~~~~~~~~~-~~~~v~~~~~----~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~  374 (447)
                      .++|++.|++. ++..+.+-... -+.-+.+...    ......+.+.|.++||.++..          ...+|+.++..
T Consensus       355 g~~l~~~l~~l~~~~~v~~vrg~Gl~~~v~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~----------~~~lr~~Ppl~  424 (445)
T PRK09221        355 APYFEDAVHSLKGLPHVIDIRNIGLVAGIELAPRPGAPGARGYEAFMKCFEKGLLVRYT----------GDTIALSPPLI  424 (445)
T ss_pred             HHHHHHHHHhhccCCCEEEEecCceEEEEEEecccccccchHHHHHHHHHHCCeEEeec----------CCEEEEECCcc
Confidence            88888888763 22222210011 1112233221    112346777888899998531          24799998877


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHH
Q 013217          375 TTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       375 ~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      .+    ++|++++.+.+++++..
T Consensus       425 ~t----~~eid~~~~~l~~~l~~  443 (445)
T PRK09221        425 IE----KAQIDELVDALGDALRA  443 (445)
T ss_pred             CC----HHHHHHHHHHHHHHHHh
Confidence            77    99999999999998863

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.48  E-value=3.2e-10  Score=113.07  Aligned_cols=330  Identities=17%  Similarity=0.144  Sum_probs=177.2

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh--cCC
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP  109 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al--~~p  109 (447)
                      -.|.|.+++.+.+.+- .  +.....+ ..+   ... ...+++.+++.-...+.  ....+||++|+.+++...  ...
T Consensus        57 ~~p~v~~ai~~ql~~l-~--~~~~~~~-~~~---~~~-~la~~l~~~~p~~~~~~--v~f~~SGseA~e~AlklAr~~tg  126 (425)
T PRK07495         57 RHPRVIAAVKAQLDRF-T--HTCHQVV-PYE---NYV-RLAERLNALVPGDFAKK--TIFVTTGAEAVENAVKIARAATG  126 (425)
T ss_pred             CCHHHHHHHHHHHhhc-c--CcccCcc-CCH---HHH-HHHHHHHHhCCCCCCCE--EEECCchHHHHHHHHHHHHHhhC
Confidence            4788999988877642 1  1110001 111   111 22356667664321111  244689999999887643  233


Q ss_pred             CCEEEEecCCCCcccCCCc------cccccccccccceeEEEecccCCCCCCCC----HHHHHHHhhh----hCCcEEEE
Q 013217          110 HDRIMGLDLPHGGHLSHGF------MTPKRRVSGTSIYFESMPYRLDESTGLVD----YDMLEKTAIL----FRPKLIIA  175 (447)
Q Consensus       110 gd~Vl~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~~~id----~~~l~~~~~~----~~~klii~  175 (447)
                      ..+|+...-.|.|.-.-..      ........-.-..+..++++.+ ..+ .+    ++++++.+..    .++.+|++
T Consensus       127 r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~l~~~~~~~~~~~~iaavi~  204 (425)
T PRK07495        127 RSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVE-LHG-VSVEQSLAALDKLFKADVDPQRVAAIII  204 (425)
T ss_pred             CCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCcc-ccc-ccHHHHHHHHHHHHHhccCCCceEEEEE
Confidence            4578877765544310000      0000000000001223333322 111 22    4455666542    35677887


Q ss_pred             cCC-CCCCCC-----ChHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccC-CCCCceEEee
Q 013217          176 GAS-AYPRDF-----DYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLR-GPRGGMIFFK  245 (447)
Q Consensus       176 ~~~-~~~~~~-----~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~-Gp~gG~i~~~  245 (447)
                      .+. .+++..     -+++|.++|++||+++|+|++|. |+...+.. . ...+ ..|++++  +|.++ |.+.|+++++
T Consensus       205 EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~gr~G~~~a~~~~gv~pDi~tl--sK~l~~G~pigav~~~  281 (425)
T PRK07495        205 EPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQT-GFARTGKLFAMEHHEVAADLTTM--AKGLAGGFPLAAVTGR  281 (425)
T ss_pred             CCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-cCCcCCCceeecccCCCCCEEee--hhhhcCCccceEEEEc
Confidence            632 223321     26899999999999999999974 55333321 0 1111 2466655  59985 5567889888


Q ss_pred             cCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC--CcEeeeC--CCC
Q 013217          246 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVSG--GSD  321 (447)
Q Consensus       246 ~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~--~~~  321 (447)
                      +      ++.+.+.......+.+ .+...+++..++++.+.+.+   +.++..+..++|.+.|++.  .+..+..  +. 
T Consensus       282 ~------~i~~~~~~~~~~~T~~-~~pl~~aaa~a~l~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~-  350 (425)
T PRK07495        282 A------EIMDAPGPGGLGGTYG-GNPLGIAAAHAVLDVIEEED---LCERANQLGNRLKQRLASLRETVPEIADIRGP-  350 (425)
T ss_pred             H------HHHhccCCCCcCCCCC-CCHHHHHHHHHHHHHHHhch---HHHHHHHHHHHHHHHHHHHHhhCCCeeeeecC-
Confidence            7      6766665432222333 34444555555777765443   3555666666676666551  1221211  22 


Q ss_pred             CeeEEecCCCCC---CC---HHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          322 NHLVLVDLRPMG---ID---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       322 ~~~~~v~~~~~~---~~---~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      ..+.++.+.+..   -+   ...+.+.+.++|+.+...   +   + ..+.+|+.++...+    ++|+++++++|.+++
T Consensus       351 Gl~~~iel~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~---g---~-~~~~~r~~Ppl~it----~~~id~~~~~l~~~l  419 (425)
T PRK07495        351 GFMNAVEFNDADSGLPSAEFANRVRLKALEKGLILLTC---G---V-HGNVIRFLAPITIQ----DDVFAEALDILEASI  419 (425)
T ss_pred             ceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeec---C---C-CCCEEEEeCCCccC----HHHHHHHHHHHHHHH
Confidence            334556553211   01   234666777899998532   1   1 13579998887666    999999999999998


Q ss_pred             HHH
Q 013217          396 EIT  398 (447)
Q Consensus       396 ~~~  398 (447)
                      ...
T Consensus       420 ~~~  422 (425)
T PRK07495        420 LEA  422 (425)
T ss_pred             HHH
Confidence            754

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.48  E-value=8.8e-11  Score=116.93  Aligned_cols=320  Identities=15%  Similarity=0.077  Sum_probs=178.1

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc----
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  107 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~----  107 (447)
                      -.|.|.+++.+.+.+-. ....+. +  ..+   ... ...+++.+++....+.   ....+||++|+.+++.-..    
T Consensus        60 ~~p~i~~Ai~~q~~~~~-~~~~~~-~--~~~---~~~-~la~~L~~~~p~~~~~---v~f~~SGsEAve~AlklAr~~~~  128 (428)
T PRK07986         60 NHPQLNAAMKSQIDAMS-HVMFGG-I--THP---PAI-ELCRKLVAMTPQPLEC---VFLADSGSVAVEVAMKMALQYWQ  128 (428)
T ss_pred             CCHHHHHHHHHHHhhcC-Cccccc-c--CCH---HHH-HHHHHHHhhCCCCcCE---EEEeCCcHHHHHHHHHHHHHHHH
Confidence            46889999887775421 111100 0  111   111 2234666666432221   2345899999998876432    


Q ss_pred             ---CCCCEEEEecCCCCcccCCCccccccccccccc-------------eeEEEecccCCCC---CCCCHHHHHHHhhhh
Q 013217          108 ---KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-------------YFESMPYRLDEST---GLVDYDMLEKTAILF  168 (447)
Q Consensus       108 ---~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~---~~id~~~l~~~~~~~  168 (447)
                         ....+|+...-.|.|.- .+      .+.+.+.             ....++.+.....   ..-|++++++.++..
T Consensus       129 ~~g~~r~kii~~~~~yHG~t-~~------a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~  201 (428)
T PRK07986        129 AKGEPRQRFLTLRHGYHGDT-FG------AMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAH  201 (428)
T ss_pred             hcCCCCcEEEEECCCcCCCc-Hh------hhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhC
Confidence               23468888876654421 00      0011110             0111222111000   023667888877642


Q ss_pred             --CCcEEEEcC--CCCCCC-----CChHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccCC
Q 013217          169 --RPKLIIAGA--SAYPRD-----FDYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRG  236 (447)
Q Consensus       169 --~~klii~~~--~~~~~~-----~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~G  236 (447)
                        +..+|++.+  ...++.     .-+++|+++|++||+++|+|++| .|+-..|.. . .-.+ ..|+++  +.|.|+|
T Consensus       202 ~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~-tG~GrtG~~fa~~~~gv~PDi~t--~gK~l~g  278 (428)
T PRK07986        202 RHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIA-TGFGRTGKLFACEHAGIAPDILC--LGKALTG  278 (428)
T ss_pred             CCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccc-cCCccCCCeeeecccCCCCCEEE--echhhhC
Confidence              345666653  233332     12789999999999999999998 665222211 0 0111 258886  4699854


Q ss_pred             C--CCceEEeecCCcchhhHHHHhhhcc-----CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHH
Q 013217          237 P--RGGMIFFKKDPVLGVELESAINNAV-----FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLV  309 (447)
Q Consensus       237 p--~gG~i~~~~~~~~~~~~~~~i~~~~-----~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~  309 (447)
                      .  +.|.+++++      ++.+.+....     ..++++ .++..+++..++++.+.+++   +.+++.+..++|.+.|+
T Consensus       279 G~~p~~av~~~~------~i~~~~~~~~~~~~~~~~T~~-g~p~~~aaa~a~L~~i~~~~---~~~~~~~~g~~l~~~l~  348 (428)
T PRK07986        279 GTMTLSATLTTR------EVAETISNGEAGCFMHGPTFM-GNPLACAVANASLSLLESGD---WQQQVAAIEAQLREELA  348 (428)
T ss_pred             CcccCcchhchH------HHHHHhhcCCCCccccCCCCC-cCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHH
Confidence            3  446667776      6777665321     122223 34555666666777766543   46677777788888877


Q ss_pred             HC-CcEeeeCCC-CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHH
Q 013217          310 EL-GYKLVSGGS-DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAI  387 (447)
Q Consensus       310 ~~-g~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l  387 (447)
                      +. ....+..-. ...+..+.+... .....+.+.|.++||.+...          ...||+.++...+    ++|++++
T Consensus       349 ~l~~~~~i~~vRg~Gl~~~ve~~~~-~~~~~~~~~l~~~Gl~~~~~----------g~~i~~~Ppl~it----~~ei~~~  413 (428)
T PRK07986        349 PLRDAPMVADVRVLGAIGVVETTRP-VNMAALQRFFVEQGVWIRPF----------GKLIYLMPPYIIL----PEQLQRL  413 (428)
T ss_pred             HHhcCCCEEeEeccceEEEEEeCCc-ccHHHHHHHHHHCCcEEEec----------CCEEEEeCCCCCC----HHHHHHH
Confidence            62 222222100 122333444322 13467888888999998531          2379998887777    9999999


Q ss_pred             HHHHHHHHHH
Q 013217          388 ADFIHEGVEI  397 (447)
Q Consensus       388 ~~~i~~~l~~  397 (447)
                      .++|.+++..
T Consensus       414 ~~~l~~~l~~  423 (428)
T PRK07986        414 TAAVNRAVQD  423 (428)
T ss_pred             HHHHHHHHhh
Confidence            9999999863

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.48  E-value=1.6e-10  Score=115.34  Aligned_cols=321  Identities=13%  Similarity=0.061  Sum_probs=174.8

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC-CCccceeeecCCcHHHHHHHHHHh--cC
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVYTAI--LK  108 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~-~~~~~~~v~~~sGs~a~~~~~~al--~~  108 (447)
                      -.|.+.+++.+.+.+-.   +.....+. .+  ..++ . .+++.+++... .+.   .+..+||++|+.+++...  ..
T Consensus        57 ~~p~v~~ai~~ql~~~~---~~~~~~~~-~~--~~~~-l-a~~l~~~~p~~~~~~---~~f~~sGseA~e~AlklAr~~t  125 (421)
T PRK06777         57 RHPKVVAAVRQQLDQFT---HTAYQIVP-YA--SYVT-L-AERINALAPIDGPAK---TAFFTTGAEAVENAVKIARAYT  125 (421)
T ss_pred             CCHHHHHHHHHHHhhcc---cccccccC-Ch--HHHH-H-HHHHHHhCCCCCCce---EEEeCCcHHHHHHHHHHHHHhh
Confidence            47888888888776421   11111011 11  1121 2 24566666422 121   233589999999887643  22


Q ss_pred             CCCEEEEecCCCCcccCCCccccccccccccc-------------eeEEEecccCCC--CCCCCHHHHHHHhhh----hC
Q 013217          109 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-------------YFESMPYRLDES--TGLVDYDMLEKTAIL----FR  169 (447)
Q Consensus       109 pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~--~~~id~~~l~~~~~~----~~  169 (447)
                      ...+|+...-.|.|.-. +      .+.+.+.             .+..++++-...  ...-+++.+++.+..    .+
T Consensus       126 gr~~ii~~~~~yHG~t~-~------~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~  198 (421)
T PRK06777        126 GRPGVIAFGGAFHGRTL-L------TMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIAPDQ  198 (421)
T ss_pred             CCCeEEEEcCCcCCccH-H------HHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhccCCCc
Confidence            34568877765444310 0      0111110             011112221000  011246677877752    24


Q ss_pred             CcEEEEcCCC-CCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccC-CCCC
Q 013217          170 PKLIIAGASA-YPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLR-GPRG  239 (447)
Q Consensus       170 ~klii~~~~~-~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~-Gp~g  239 (447)
                      +.+|++.+.. ..+  ..+   +++|.++|++||+++|+|++|. |+...+.. . ..++ ..|+++  ++|.++ |.+.
T Consensus       199 iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-g~gr~g~~~~~~~~~~~pDiv~--~sK~l~~G~pi  275 (421)
T PRK06777        199 VAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQT-GFARTGKLFAMEYYDVKPDLIT--MAKSLGGGMPI  275 (421)
T ss_pred             eEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CCccCCchhhhhhcCCCCCEEe--eehhhcCCCce
Confidence            5677776321 222  334   7899999999999999999974 65433321 1 0011 257774  569884 5677


Q ss_pred             ceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC----Cc-E
Q 013217          240 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL----GY-K  314 (447)
Q Consensus       240 G~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~-~  314 (447)
                      |++++++      ++.+.+......++.+ .+....++..++++.+.++   +..++..+..++|.+.|++.    ++ .
T Consensus       276 gav~~~~------~i~~~~~~~~~~~T~~-~~p~~~aaa~a~L~~~~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~  345 (421)
T PRK06777        276 SAVVGRA------EVMDAPAPGGLGGTYA-GNPLAVAAALAVLDVIAEE---KLCQRALILGAHLVEVLEKAKASCPAIV  345 (421)
T ss_pred             EEEEEcH------HHHhccCCCCCCCCCC-cCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence            9999887      6777665433323333 3555555555677766543   45677777788888888762    21 1


Q ss_pred             eeeCCCCCeeEEecCCC--CCCC----HHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHH
Q 013217          315 LVSGGSDNHLVLVDLRP--MGID----GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIA  388 (447)
Q Consensus       315 ~~~~~~~~~~~~v~~~~--~~~~----~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~  388 (447)
                      .+. +....+ .+.+..  .+.+    ...+.+.|.+.||.+..    +..  + .+.+|+.++...+    +++++++.
T Consensus       346 ~vr-g~G~~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~----~~~--~-g~~lr~~ppl~i~----~~~i~~~~  412 (421)
T PRK06777        346 DIR-ARGSMV-AVEFNDPQTGKPSPEFTRQYQRQALEEGLLLLS----CGV--H-GNVIRFLYPLTIP----DAQFSKAL  412 (421)
T ss_pred             Eec-CceEEE-EEEEecCccCCccHHHHHHHHHHHHhCCeEEee----cCC--C-CCEEEEeCCCCCC----HHHHHHHH
Confidence            121 222332 222221  1111    12344456779999843    211  1 2489999876555    99999999


Q ss_pred             HHHHHHHH
Q 013217          389 DFIHEGVE  396 (447)
Q Consensus       389 ~~i~~~l~  396 (447)
                      +.|.+++.
T Consensus       413 ~~l~~~l~  420 (421)
T PRK06777        413 NILTRLLA  420 (421)
T ss_pred             HHHHHHHh
Confidence            99988764

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.48  E-value=2.6e-10  Score=114.64  Aligned_cols=329  Identities=13%  Similarity=0.084  Sum_probs=173.0

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh--cCC
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP  109 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al--~~p  109 (447)
                      -.|.|.+++.+.+.+ .. .+...  ....+   ... ...+++.+++.......  ...++||++|+.+++...  ...
T Consensus        73 ~~p~v~~ai~~q~~~-~~-~~~~~--~~~~~---~~~-~la~~l~~~~p~~~~~~--v~f~~sGseA~e~AlklAr~~tg  142 (443)
T PRK06058         73 SAPRVVEAVREQVAR-FT-HTCFM--VTPYE---GYV-AVAEQLNRLTPGDHEKR--SALFNSGAEAVENAVKIARSYTG  142 (443)
T ss_pred             CCHHHHHHHHHHHHh-cc-Ccccc--ccCCH---HHH-HHHHHHHHhCCCCCCCE--EEEeCCcHHHHHHHHHHHHHhhC
Confidence            368898888887754 11 01000  01111   112 22356767664321111  234689999999888732  223


Q ss_pred             CCEEEEecCCCCcccCC-----Cc-cccccccc-cccceeEEEecc--cCC-CCCCCC--------HHHHHHHhhhhCCc
Q 013217          110 HDRIMGLDLPHGGHLSH-----GF-MTPKRRVS-GTSIYFESMPYR--LDE-STGLVD--------YDMLEKTAILFRPK  171 (447)
Q Consensus       110 gd~Vl~~~~~~~~~~~~-----~~-~~~~~~~~-~~g~~~~~~~~~--~~~-~~~~id--------~~~l~~~~~~~~~k  171 (447)
                      .++|++....|.|.-.-     +. ........ ... ....++++  .+. .....+        ++.+++.+...++.
T Consensus       143 r~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iA  221 (443)
T PRK06058        143 RQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAP-EVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVGADNLA  221 (443)
T ss_pred             CCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCC-CceEcCCCcccccccccccchHHHHHHHHHHHHHhhCCCceE
Confidence            47898887665443200     00 00000000 000 01111211  110 000111        22333333323567


Q ss_pred             EEEEcCCC-CCCCC-C----hHHHHHHHHHhCCEEEEehhhhccccccccC-CCC-CC-cccEEEeCCCcccC-CCCCce
Q 013217          172 LIIAGASA-YPRDF-D----YPRMRQIADAVGALLMMDMAHISGLVAASVV-ADP-FK-YCDVVTTTTHKSLR-GPRGGM  241 (447)
Q Consensus       172 lii~~~~~-~~~~~-~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~~~-~~-~~Di~~~s~~K~l~-Gp~gG~  241 (447)
                      +|++.+.. .++.. +    +++|+++|++||+++|+|+++ .|+...+.. ... ++ ..|+++++  |.++ |.+.|+
T Consensus       222 avi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~-tGfgRtG~~fa~~~~gv~PDiv~~g--K~l~~G~Pi~a  298 (443)
T PRK06058        222 AVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQ-TGFARTGAWFACEHEGIVPDLITTA--KGIAGGLPLSA  298 (443)
T ss_pred             EEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc-cCCCcChhhhHHHhcCCCCCEEEEc--ccccCCCccEE
Confidence            78776321 22322 2    799999999999999999997 454333311 000 11 25888885  9985 555688


Q ss_pred             EEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC--CcEeee--
Q 013217          242 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVS--  317 (447)
Q Consensus       242 i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~--  317 (447)
                      +++++      ++.+.+......++. +.+...+++..++++.+.+++   ..++..+..++|.+.|++.  ...++.  
T Consensus       299 v~~~~------~i~~~~~~~~~~~T~-~gnpl~~aaa~a~L~~~~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~i~~v  368 (443)
T PRK06058        299 VTGRA------EIMDAPHPGGLGGTY-GGNPVACAAALAAIETIEEDD---LVARARQIEALMTDRLRALAAEDDRIGDV  368 (443)
T ss_pred             EEEcH------HHHhhccCCCCCCCC-CCCHHHHHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHHHHhhCCcEEee
Confidence            88887      676666543222222 335555666666777665443   4566666677777777662  122221  


Q ss_pred             CCCCCeeEEecCCCC--CC-C---HHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217          318 GGSDNHLVLVDLRPM--GI-D---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  391 (447)
Q Consensus       318 ~~~~~~~~~v~~~~~--~~-~---~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i  391 (447)
                      .+... +..+.+...  .. +   ...+.+.|.++||.+...    .  ++ ...||+.++...+    ++|++++++++
T Consensus       369 rg~G~-~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~~~~~----~--~~-~~~lr~~Ppl~~t----~~~i~~~~~~l  436 (443)
T PRK06058        369 RGRGA-MIAIELVKPGTTEPDAELTKALAAAAHAAGVIVLTC----G--TY-GNVIRLLPPLVIG----DELLREGLDVL  436 (443)
T ss_pred             eccce-EEEEEEecCCCCCCcHHHHHHHHHHHHHCCeEEecc----C--CC-CCEEEEECCCccC----HHHHHHHHHHH
Confidence            12222 222333211  11 1   234556667899998532    1  11 2479998887777    99999999999


Q ss_pred             HHHHH
Q 013217          392 HEGVE  396 (447)
Q Consensus       392 ~~~l~  396 (447)
                      ++++.
T Consensus       437 ~~~l~  441 (443)
T PRK06058        437 EAALA  441 (443)
T ss_pred             HHHHH
Confidence            98875

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.47  E-value=2e-10  Score=114.29  Aligned_cols=330  Identities=13%  Similarity=0.075  Sum_probs=171.6

Q ss_pred             CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCcHHHHHHHHHHhc-
Q 013217           31 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGSPANFEVYTAIL-  107 (447)
Q Consensus        31 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sGs~a~~~~~~al~-  107 (447)
                      .-.|.|.+++.+.+.+.   ++.....+ ..+   ... ...+++.++...+  .... +.+..+||++|+..++.... 
T Consensus        51 h~~p~v~~ai~~ql~~~---~~~~~~~~-~~~---~~~-~lae~l~~~~~~~~~~~~~-~~f~~~sGseA~e~AlklAr~  121 (412)
T TIGR02407        51 HNNPKLKQALIDYLADD---GIIHSLDM-ATE---AKR-EFLETFNEIILKPRGLDYK-VQFPGPTGTNAVESALKLARK  121 (412)
T ss_pred             CCCHHHHHHHHHHHhhc---cceecccc-CcH---HHH-HHHHHHHHhccCccCCCce-EEEeCCCchHHHHHHHHHHhh
Confidence            34799999998877641   11111001 111   111 1224555553211  1111 22324799999998887542 


Q ss_pred             -CCCCEEEEecCCCCcccCC-----CccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh-----CCcEEEEc
Q 013217          108 -KPHDRIMGLDLPHGGHLSH-----GFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIAG  176 (447)
Q Consensus       108 -~pgd~Vl~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~-----~~klii~~  176 (447)
                       ....+|+...-.|.|.-..     +..............+..+|++.-.....-+++.+++.+.++     ++.+|++.
T Consensus       122 ~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~E  201 (412)
T TIGR02407       122 VTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILE  201 (412)
T ss_pred             hcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEec
Confidence             2346788877654443100     000000000000001112222100000012467788877642     45677775


Q ss_pred             CC-CCCCC--C---ChHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccC--CCCCceEEee
Q 013217          177 AS-AYPRD--F---DYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLR--GPRGGMIFFK  245 (447)
Q Consensus       177 ~~-~~~~~--~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~--Gp~gG~i~~~  245 (447)
                      +- +..+.  .   -+++|.++|++||+++|+|+++. |+-..+.. . .... ..|++++|  |+|+  |.+.|+++++
T Consensus       202 pi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t-G~GRtG~~~a~~~~~v~PDi~~~~--K~lg~~G~pigav~~~  278 (412)
T TIGR02407       202 TVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQA-GCGRTGTFFSFEPAGIEPDIVCLS--KSISGYGLPLALTLIK  278 (412)
T ss_pred             cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCccchhHHhcccCCCCCEEEec--hhccCCccceeEEEEc
Confidence            32 12222  1   26899999999999999999974 43211110 0 0011 25888765  9985  4456888888


Q ss_pred             cCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHH-hcChhHHHHHHHHHHHHHHHHHHHHH----CC-cEeeeCC
Q 013217          246 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH-AQSPEFKVYQNKVVSNCRALASRLVE----LG-YKLVSGG  319 (447)
Q Consensus       246 ~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~-~~~~~~~~~~~~~~~~~~~l~~~L~~----~g-~~~~~~~  319 (447)
                      +      ++ +.+......+++ +.+...+++..++++. +.+..   +.+++.+..++|.+.|++    .+ +..-..+
T Consensus       279 ~------~~-~~~~~~~~~~T~-~gnpl~~aaa~a~l~~~i~~~~---l~~~~~~~g~~l~~~l~~l~~~~~~~~~~vrg  347 (412)
T TIGR02407       279 P------EL-DVWKPGEHNGTF-RGNNLAFVTATAALEYYWSDDA---FEKAVQRKSEIIQERLDRIVAEYPELIKQVRG  347 (412)
T ss_pred             h------hh-hccCCCccCCCC-CccHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHHHHHhhCCCceEeeec
Confidence            7      44 333322211222 2344445554456664 44333   345555566666666654    22 2111111


Q ss_pred             CCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          320 SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       320 ~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                       ...+.++.+.+. .....+.+.|.++||.+...    .   .....||+.++...+    ++|++++.+.+++++.
T Consensus       348 -~Gl~~~l~l~~~-~~~~~~~~~~~~~Gv~v~~~----~---~~~~~lr~~p~l~~t----~~~i~~~~~~l~~~l~  411 (412)
T TIGR02407       348 -RGLMQGIECGDG-DLAGKIAKAAFENGLIIETS----G---PNDEVIKLLPPLTID----EETLQQGLDILEQAVE  411 (412)
T ss_pred             -ceeEEEEEecCh-HHHHHHHHHHHHCCCEEecc----C---CCCCEEEEECCCCCC----HHHHHHHHHHHHHHHh
Confidence             234456666432 23456778888899998532    1   113579999988777    9999999999998875

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.46  E-value=1.2e-10  Score=116.44  Aligned_cols=332  Identities=14%  Similarity=0.092  Sum_probs=172.1

Q ss_pred             CCHHHHHHHhhhhhcc-CCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCcHHHHHHHHHHh--
Q 013217           32 TSRAVMEAVGSCLTNK-YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGSPANFEVYTAI--  106 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~-~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sGs~a~~~~~~al--  106 (447)
                      -.|.|.+++.+.+.+. +..+   .. + ..+   ...+. .+++.+.+..+  .+.. +.+..+||++|+.+++...  
T Consensus        56 ~~p~v~~ai~~ql~~~~~~~~---~~-~-~~~---~~~~l-ae~l~~~~~~~~~~~~~-~~f~~~sGseA~e~AlklAr~  125 (425)
T PRK09264         56 NNPVLKQALIDYLQRDGITHG---LD-M-HTT---AKREF-LETFEETILKPRGLDYK-VQFTGPTGTNAVEAALKLARK  125 (425)
T ss_pred             CCHHHHHHHHHHHHhcccccc---cc-c-CcH---HHHHH-HHHHHHhhcCCcCCCce-EEEeCCCHHHHHHHHHHHHHH
Confidence            4799999988877641 1111   00 1 111   11112 24555554222  1111 2232369999999887644  


Q ss_pred             cCCCCEEEEecCCCCcccC----C-CccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh-----CCcEEEEc
Q 013217          107 LKPHDRIMGLDLPHGGHLS----H-GFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIAG  176 (447)
Q Consensus       107 ~~pgd~Vl~~~~~~~~~~~----~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~-----~~klii~~  176 (447)
                      .....+|+...-.|.|.-.    . +....+.........+..++++.......-|++++++++.+.     ++.+|++.
T Consensus       126 ~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~E  205 (425)
T PRK09264        126 VTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVE  205 (425)
T ss_pred             hcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEEEe
Confidence            2234678877655433310    0 000000000000001222333211000113678888888642     34567765


Q ss_pred             CC-CCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccC--CCCCceEEee
Q 013217          177 AS-AYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLR--GPRGGMIFFK  245 (447)
Q Consensus       177 ~~-~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~--Gp~gG~i~~~  245 (447)
                      +- ...+  ..   .+++|+++|++||+++|+|++|. |+...|.. . ...+ ..|++++|  |.|+  |.+.|+++++
T Consensus       206 pv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t-G~GrtG~~~~~~~~~v~PDi~t~~--K~l~~~G~pigav~~~  282 (425)
T PRK09264        206 TVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQA-GCGRTGTFFSFERAGITPDIVTLS--KSISGYGLPMALVLIK  282 (425)
T ss_pred             cccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhh-CCccccHHHHHhhcCCCCCEEEec--cccCCCccceEEEEEc
Confidence            21 1222  22   47999999999999999999984 43222210 0 0011 25887665  9885  3345888888


Q ss_pred             cCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC--CcEe-eeCCC-C
Q 013217          246 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKL-VSGGS-D  321 (447)
Q Consensus       246 ~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~-~~~~~-~  321 (447)
                      +      ++ ..+......++. +.+...+++..++++.+...  .++.+++.++.++|.+.|++.  .+.. ..... .
T Consensus       283 ~------~i-~~~~~~~~~~T~-~gnp~~~aaa~a~l~~~~~~--~~l~~~~~~~g~~l~~~l~~l~~~~~~~~~~vrg~  352 (425)
T PRK09264        283 P------EL-DVWKPGEHNGTF-RGNNLAFVTATAALEEYWSD--DAFEKEVKAKGELVRERLEEIAAKYPGLGAEVRGR  352 (425)
T ss_pred             h------hh-hccCCCccCCCC-CCCHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHhCCCceecceec
Confidence            7      44 233222222222 22344444444456332211  234666777777777776552  1221 11101 1


Q ss_pred             CeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          322 NHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       322 ~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      ..+.++.+... .....+.+.|.+.||.+...    .   .....||++++..++    ++|++++.+.|.+++...
T Consensus       353 Gl~~~i~l~~~-~~~~~l~~~~~~~Gv~~~~~----~---~~~~~lr~~p~l~~t----~~ei~~~~~~l~~~l~~~  417 (425)
T PRK09264        353 GMMQGIDFGDG-ELAGKIAAEAFENGLIIETS----G---PEDEVVKLLPPLTID----EEELEEGLDILEEAVAEV  417 (425)
T ss_pred             ccEEEEEecCh-HHHHHHHHHHHHCCCEEecc----C---CCCCEEEEeCCCCCC----HHHHHHHHHHHHHHHHHH
Confidence            23345555432 12456778888899998531    1   113589999887777    999999999999998754

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.46  E-value=1.5e-10  Score=115.53  Aligned_cols=320  Identities=13%  Similarity=0.041  Sum_probs=178.8

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc----
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  107 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~----  107 (447)
                      -.|.|.+++...+.+- .  +.....+. .    ..+....+++.+.+....+.   ....+||++|+.+++....    
T Consensus        61 ~~p~v~~ai~~q~~~~-~--~~~~~~~~-~----~~~~~lae~L~~~~p~~~~~---v~f~~sGseAve~AlklAr~~~~  129 (429)
T PRK06173         61 NHPRLNAAATNQLAKM-S--HIMFGGFT-H----EPAVELAQKLLEILPPSLNK---IFFADSGSVAVEVAMKMALQYQQ  129 (429)
T ss_pred             CCHHHHHHHHHHHHhc-C--CccccccC-C----HHHHHHHHHHHhhCCCCcCE---EEEeCCchHHHHHHHHHHHHHHH
Confidence            3688888887766541 1  11000001 1    11112234566665322221   2346899999998876432    


Q ss_pred             ---CCC-CEEEEecCCCCcccCCCccccccccccccc-------------eeEEEecccCCCC---CCCCHHHHHHHhhh
Q 013217          108 ---KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-------------YFESMPYRLDEST---GLVDYDMLEKTAIL  167 (447)
Q Consensus       108 ---~pg-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~---~~id~~~l~~~~~~  167 (447)
                         ++| .+|+...-.|.|.- .+      .+.+++.             ....++++.....   ..-+++.+++.+..
T Consensus       130 ~~g~~~r~~ii~~~~~yHG~t-~~------a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~  202 (429)
T PRK06173        130 AKGEVQRTKFATIRSGYHGDT-WH------AMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQ  202 (429)
T ss_pred             HhCCCCCcEEEEECCCcCCcc-hh------hhccCCCchhhhhcccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHHh
Confidence               133 57888776654431 00      0011110             0111222211000   01246667777753


Q ss_pred             --hCCcEEEEcCC--CCCCC--CC---hHHHHHHHHHhCCEEEEehhhhccccccccC--CCCCC-cccEEEeCCCcccC
Q 013217          168 --FRPKLIIAGAS--AYPRD--FD---YPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTTTHKSLR  235 (447)
Q Consensus       168 --~~~klii~~~~--~~~~~--~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~--~~~~~-~~Di~~~s~~K~l~  235 (447)
                        .++.+|++.+-  ..++.  .+   +++++++|++||+++|+|++| .|+-..|..  ..-++ ..|+++  +.|.|.
T Consensus       203 ~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~-tG~GrtG~~~a~~~~gv~PDiv~--~gK~l~  279 (429)
T PRK06173        203 KGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIA-TGFGRTGKLFALEHAGVVPDIMC--IGKALT  279 (429)
T ss_pred             CCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchh-cCCCcCCcchHHHhcCCCCCEEE--eehhhh
Confidence              24567777642  23332  12   589999999999999999999 775322211  01111 258887  469985


Q ss_pred             CC--CCceEEeecCCcchhhHHHHhhhc-----cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHH
Q 013217          236 GP--RGGMIFFKKDPVLGVELESAINNA-----VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRL  308 (447)
Q Consensus       236 Gp--~gG~i~~~~~~~~~~~~~~~i~~~-----~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L  308 (447)
                      |.  ..|.++.++      ++.+.+...     ...++++ .+...+++..++++.+.+++   ..+++.++.++|.+.|
T Consensus       280 gG~~p~~a~~~~~------~i~~~~~~~~~~~~~~~~T~~-g~p~~~aaa~a~l~~i~~~~---~~~~~~~~g~~l~~~L  349 (429)
T PRK06173        280 GGYLTLSATITTE------AIAQTICSGEAKCFMHGPTFM-ANPLACAIAAESIRLLLESP---WQQNIQRIEAQLKQEL  349 (429)
T ss_pred             CCccccceEEecH------HHHHHHhcCCCCccccCCCCC-cCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHH
Confidence            43  456667776      666655421     1111222 35556666666787776543   3667778888888888


Q ss_pred             HHC-CcEeeeCC-CCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHH
Q 013217          309 VEL-GYKLVSGG-SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVA  386 (447)
Q Consensus       309 ~~~-g~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~  386 (447)
                      ++. ++..+..- ....+.-+.+... .....+.+.|.++||.+...          ...||+.++...+    ++|+++
T Consensus       350 ~~~~~~~~v~~vRg~Gl~~~iel~~~-~~~~~i~~~l~e~Gi~v~~~----------g~~l~~~Ppl~it----~~ei~~  414 (429)
T PRK06173        350 APAAEFDSVAEVRVLGAIGVVEMKEP-VNMATLQPRFVEHGIWVRPF----------GKLVYIMPPFIIS----PDELSQ  414 (429)
T ss_pred             HHhhcCCCeeeeeccceEEEEEeCCc-ccHHHHHHHHHHCCeEEEec----------CCEEEEeCCccCC----HHHHHH
Confidence            753 34333210 1233444555432 23467888888999998531          2479998887666    999999


Q ss_pred             HHHHHHHHHHH
Q 013217          387 IADFIHEGVEI  397 (447)
Q Consensus       387 l~~~i~~~l~~  397 (447)
                      +.++|.+++..
T Consensus       415 ~~~~l~~~l~~  425 (429)
T PRK06173        415 LTSGLLRVLKQ  425 (429)
T ss_pred             HHHHHHHHHHH
Confidence            99999999874

>PRK06541 hypothetical protein; Provisional

Probab=99.45  E-value=1.3e-10  Score=116.80  Aligned_cols=216  Identities=16%  Similarity=0.148  Sum_probs=125.6

Q ss_pred             HHHHHHhhhh---CCcEEEEcCC-CCCC-CCC----hHHHHHHHHHhCCEEEEehhh-hccccccccCCCCCC-cccEEE
Q 013217          159 DMLEKTAILF---RPKLIIAGAS-AYPR-DFD----YPRMRQIADAVGALLMMDMAH-ISGLVAASVVADPFK-YCDVVT  227 (447)
Q Consensus       159 ~~l~~~~~~~---~~klii~~~~-~~~~-~~~----~~~i~~ia~~~g~~livD~a~-~~g~~~~~~~~~~~~-~~Di~~  227 (447)
                      +.+++++...   ++.+|++.+- +..+ ..+    +++|.++|+++|+++|+|++| ..|-........-.+ ..|+++
T Consensus       208 ~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt  287 (460)
T PRK06541        208 DRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDIIT  287 (460)
T ss_pred             HHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCCCCCEEE
Confidence            6677777532   3445565531 2223 445    799999999999999999998 344322211000011 258886


Q ss_pred             eCCCcccCC-C-CCceEEeecCCcchhhHHHHhhhcc---CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHH
Q 013217          228 TTTHKSLRG-P-RGGMIFFKKDPVLGVELESAINNAV---FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCR  302 (447)
Q Consensus       228 ~s~~K~l~G-p-~gG~i~~~~~~~~~~~~~~~i~~~~---~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~  302 (447)
                        +.|.++| . +.|.+++++      ++.+.+....   ..+.+.+.+...+++..+.++.+..++   ..+++.++.+
T Consensus       288 --~gK~l~~G~~pigav~~~~------~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l~~~~---~~~~~~~~g~  356 (460)
T PRK06541        288 --CAKGITSGYSPLGAMIASD------RLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFEREG---LLDHVRDNEP  356 (460)
T ss_pred             --ecccccCCccceeEEEEcH------HHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHH
Confidence              4599864 2 456777776      5666554321   111122234444555555666655433   4677888888


Q ss_pred             HHHHHHHHC-CcEeee--CCCCCeeEEecCCCC-----CCC--------HHHHHHHHhhcCeEEccCCCCCCCCCCCCCe
Q 013217          303 ALASRLVEL-GYKLVS--GGSDNHLVLVDLRPM-----GID--------GARVEKILDMASITLNKNSVPGDKSALVPGG  366 (447)
Q Consensus       303 ~l~~~L~~~-g~~~~~--~~~~~~~~~v~~~~~-----~~~--------~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~  366 (447)
                      +|.+.|++. ...++.  .+. ..+.-+.+...     ..+        ...+.+.|.++||.+...  +     .....
T Consensus       357 ~l~~~L~~l~~~~~v~~vrg~-Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--~-----~g~~~  428 (460)
T PRK06541        357 AFRATLEKLLDLPIVGDVRGD-GYFYGIELVKDKATKETFTDDESERLLRGFLSPALFEAGLYCRAD--D-----RGDPV  428 (460)
T ss_pred             HHHHHHHHhhcCCCeEEEEec-ceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHHhCCeEEEec--C-----CCCCE
Confidence            888888773 222221  111 22222333110     000        024556777899998531  1     11357


Q ss_pred             EEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          367 IRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       367 iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      ||++++...|    ++|++++.+++++++..
T Consensus       429 lrl~Ppl~~t----~~~id~~~~~l~~~l~~  455 (460)
T PRK06541        429 VQLAPPLISG----QEEFDEIEQILRSVLTE  455 (460)
T ss_pred             EEEECCCCCC----HHHHHHHHHHHHHHHHH
Confidence            9999887777    99999999999999864

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.45  E-value=1e-10  Score=116.79  Aligned_cols=327  Identities=12%  Similarity=0.054  Sum_probs=179.8

Q ss_pred             CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcC--
Q 013217           31 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--  108 (447)
Q Consensus        31 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~--  108 (447)
                      .-.|.+.+++...+.+ +....... + ...   ..+  ...+++.++++-.-+.   ...++||++|+..++.....  
T Consensus        61 h~~p~v~~ai~~~~~~-~~~~~~~~-~-~~~---~~~--~la~~l~~~~~~~~~~---v~f~~sGseA~e~AlklAr~~~  129 (427)
T TIGR00508        61 YNHPRLNAAAQKQIDK-MSHVMFGG-F-THK---PAI--ELCQKLVKMTPNALDC---VFLADSGSVAVEVALKMALQYW  129 (427)
T ss_pred             CCCHHHHHHHHHHHHh-cCCccccc-c-CCH---HHH--HHHHHHHhhCCCCCCE---EEEeCCcHHHHHHHHHHHHHHH
Confidence            3478888888776653 21111111 1 111   112  1234666666433221   24468999999888764321  


Q ss_pred             -----CC-CEEEEecCCCCcccCCCccc-cccc-cc--cccce--eEEEecccCCC--C-CCCCHHHHHHHhhhh--CCc
Q 013217          109 -----PH-DRIMGLDLPHGGHLSHGFMT-PKRR-VS--GTSIY--FESMPYRLDES--T-GLVDYDMLEKTAILF--RPK  171 (447)
Q Consensus       109 -----pg-d~Vl~~~~~~~~~~~~~~~~-~~~~-~~--~~g~~--~~~~~~~~~~~--~-~~id~~~l~~~~~~~--~~k  171 (447)
                           +| .+|+...-.|.|........ .... ..  +.+..  ...++++...-  . ..-|++++++++...  +..
T Consensus       130 ~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~va  209 (427)
T TIGR00508       130 QAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAKLMELHSDEIA  209 (427)
T ss_pred             HhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCccccchhHHHHHHHHHHHHHhcCCcEE
Confidence                 23 67888876655442100000 0000 00  00000  01111111100  0 012567777777542  345


Q ss_pred             EEEEcC--CCCCC-----CCChHHHHHHHHHhCCEEEEehhhhccccccccC--CCCCC-cccEEEeCCCcccCCC--CC
Q 013217          172 LIIAGA--SAYPR-----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTTTHKSLRGP--RG  239 (447)
Q Consensus       172 lii~~~--~~~~~-----~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~--~~~~~-~~Di~~~s~~K~l~Gp--~g  239 (447)
                      +|++.+  +..++     ...+++|+++|++||+++|+|++| .|+...+..  ..-.+ ..|+++  +.|.|.|.  ..
T Consensus       210 avivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~-tG~Gr~G~~~~~~~~~v~pDi~~--~gK~l~gG~~p~  286 (427)
T TIGR00508       210 AVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIA-TGFGRTGKLFACEHAGVVPDILC--VGKALTGGYMTL  286 (427)
T ss_pred             EEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccc-cCCCcCCccchhhhcCCCCCEEE--echhhhcCcccc
Confidence            666663  33333     235789999999999999999998 665333321  10111 368887  46998543  34


Q ss_pred             ceEEeecCCcchhhHHHHhhhcc-----CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcE
Q 013217          240 GMIFFKKDPVLGVELESAINNAV-----FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYK  314 (447)
Q Consensus       240 G~i~~~~~~~~~~~~~~~i~~~~-----~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~  314 (447)
                      +.++.++      ++.+.+....     ...+++ .+...+++..++++.+.+.+   ..+++.++.++|.+.|++.+..
T Consensus       287 ~a~~~~~------~~~~~~~~~~~~~~~~~~T~~-g~p~~~aaa~a~l~~l~~~~---~~~~~~~~~~~l~~~L~~l~~~  356 (427)
T TIGR00508       287 SATVTTD------KVAQTISSGEAGCFMHGPTFM-GNPLACAVAEASLAILLEGE---WQKQVSAIENQLKRELSPLRKN  356 (427)
T ss_pred             eEEEEcH------HHHHHHhcCCCCccccCCCCC-cCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHhhcC
Confidence            6677776      6766665321     111122 24555556566777665443   3677888888898888774321


Q ss_pred             -eeeCCC-CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHH
Q 013217          315 -LVSGGS-DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH  392 (447)
Q Consensus       315 -~~~~~~-~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~  392 (447)
                       .+.... ...+..+.+... .....+.+.|.++||.+...          ...+|+.++..+|    ++|++++.++++
T Consensus       357 ~~i~~vrg~G~~~~i~~~~~-~~~~~~~~~l~~~Gv~~~~~----------~~~l~~~ppl~~t----~~~id~~~~~l~  421 (427)
T TIGR00508       357 PVVKDVRVLGAIGVVEMYKP-VNVEELQKKFVEQGVWIRPF----------GKLIYVMPPYIIT----TEQLQKLTAALI  421 (427)
T ss_pred             CCEEeEeccccEEEEEECCc-cCHHHHHHHHHHCCeEEEec----------CCEEEEECCCCCC----HHHHHHHHHHHH
Confidence             111100 123334444322 23567888899999998531          2379999887777    999999999999


Q ss_pred             HHHH
Q 013217          393 EGVE  396 (447)
Q Consensus       393 ~~l~  396 (447)
                      +++.
T Consensus       422 ~~l~  425 (427)
T TIGR00508       422 EALH  425 (427)
T ss_pred             HHHh
Confidence            9885

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=99.45  E-value=2.6e-11  Score=117.91  Aligned_cols=273  Identities=18%  Similarity=0.170  Sum_probs=141.0

Q ss_pred             HHHHHHHHcCCCCCccceeeecCCcH-HHHHHHHHHh---cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEe
Q 013217           71 CQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAI---LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMP  146 (447)
Q Consensus        71 ~~~~~~~~~g~~~~~~~~~v~~~sGs-~a~~~~~~al---~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  146 (447)
                      -+..+++++|.+.    +|.....|+ .+-.+++++.   -+.+++|+++...|+.+....      .....+.+++++.
T Consensus       115 ~Qs~i~eLTGmdv----aNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~------~t~a~~~g~~iv~  184 (429)
T PF02347_consen  115 YQSMICELTGMDV----ANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVL------RTYAAPLGIEIVE  184 (429)
T ss_dssp             HHHHHHHHHTSSE----E-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHH------HHHCCHCCEEEEE
T ss_pred             HHHHHHHhhCCCc----cCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHH------HHhhhhCCeEEEE
Confidence            3478999999985    344444443 3333444443   344579999988777664211      0112334467777


Q ss_pred             cccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC-CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-ccc
Q 013217          147 YRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCD  224 (447)
Q Consensus       147 ~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-~~D  224 (447)
                      ++.+ +.+..|        ++ ++..|++..||+-+ ..|+++|.+++|++|+++++ .+.   .+.......|-. ++|
T Consensus       185 ~~~~-~~~~~d--------~~-~~a~v~vq~Pn~~G~~ed~~~i~~~~h~~gal~~~-~ad---~~aL~~l~~Pge~GAD  250 (429)
T PF02347_consen  185 VPLD-EDGTTD--------DD-DTAAVMVQNPNTFGVFEDIKEIADIAHAAGALVIV-GAD---PNALGGLKSPGEYGAD  250 (429)
T ss_dssp             E-BB-TTCSB---------ST-TEEEEEEESS-TTSB--THHHHHHHHHHTT-EEEE-CGG---CCGCCTC--GGGGT-S
T ss_pred             eccc-ccCCcc--------cc-CeEEEEeecCCCCceEeeHHHHHHHHHHcCCEEEE-ecC---HHHHhCcCChhhcCcc
Confidence            6666 345555        33 78889999888877 66899999999999999987 543   333334445544 699


Q ss_pred             EEEeCCCcccC------CCCCceEEeecCCcchhhHHHHh----------------------------hhccCCCCCCCC
Q 013217          225 VVTTTTHKSLR------GPRGGMIFFKKDPVLGVELESAI----------------------------NNAVFPGLQGGP  270 (447)
Q Consensus       225 i~~~s~~K~l~------Gp~gG~i~~~~~~~~~~~~~~~i----------------------------~~~~~~~~~g~p  270 (447)
                      |++++ ||+|+      ||..|++.+++.      +...+                            ++-......+|.
T Consensus       251 I~vg~-~Q~fg~p~~~GGP~~G~~a~~~~------l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctn  323 (429)
T PF02347_consen  251 IVVGE-HQTFGIPMGFGGPGAGFFAVRED------LVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTN  323 (429)
T ss_dssp             EEEEC-CTTTT---CCC-S--EEEEE-GG------GGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS
T ss_pred             EEeeC-CCCCcccCCCCCCCeeeEEEhhh------hhhhCCCceecccccccccceeeeccccccccccccchhhhhhhh
Confidence            99776 88763      455599999984      22221                            111001111221


Q ss_pred             cHHHHHHHHH--HHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCe
Q 013217          271 HNHTIGGLAV--CLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASI  348 (447)
Q Consensus       271 ~~~~~aal~~--al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI  348 (447)
                        ..+.|+.+  -+..+..+|+++..++...++.++++.|.+. +.+......-+-.++.... .....++.+.....|+
T Consensus       324 --qaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~-~~~~~~~~~f~e~v~~~~~-~~~~~~l~~~~~~~gl  399 (429)
T PF02347_consen  324 --QALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKI-YGLPFDNPFFFEFVVVFSK-DKEVEELLKRGIEGGL  399 (429)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-TBECSSSSSBSSEEEEESS--HHHHHHHHTT----E
T ss_pred             --HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccCCCCceeeeeecCC-cHHHHHHHHHHHhcCC
Confidence              12222221  2233445688999999999999999999885 2222211111112222222 1112223333344554


Q ss_pred             EEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217          349 TLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  391 (447)
Q Consensus       349 ~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i  391 (447)
                      ...   .+      ..+.+-+++...++    ++||+++++++
T Consensus       400 ~~~---~~------~~~~~li~~TE~~t----~edid~lv~~f  429 (429)
T PF02347_consen  400 NLR---YP------DDGALLICVTETRT----KEDIDRLVEAF  429 (429)
T ss_dssp             EEG---GG-------SSEEEEE--TT------HHHHHHHHH--
T ss_pred             Ccc---cc------CCCeEEEEccCCCC----HHHHHHHHhcC
Confidence            432   11      12378888888887    99999998864

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>PRK06105 aminotransferase; Provisional

Probab=99.44  E-value=2.4e-10  Score=115.04  Aligned_cols=324  Identities=15%  Similarity=0.106  Sum_probs=174.1

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc----
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  107 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~----  107 (447)
                      -+|.|.+|+.+.+.+ ........++.  .    ..+....+++.+++..+.+.   ....+||++|+.+++....    
T Consensus        65 ~~p~i~~Ai~~q~~~-~~~~~~~~~~~--~----~~~~~lae~L~~~~p~~~~~---v~f~~SGseAve~AlKlar~~~~  134 (460)
T PRK06105         65 SEQRLVEAAARQMKK-LPFYHTFSHKS--H----GPVIDLAEKLVAMAPVPMSK---VFFTNSGSEANDTVVKLVWYYNN  134 (460)
T ss_pred             CCHHHHHHHHHHHHh-CCCeecccccC--C----HHHHHHHHHHHHhCCCCCCE---EEEeCCcHHHHHHHHHHHHHHHH
Confidence            379999999888764 21111111111  1    11122335677776433221   2335899999998887532    


Q ss_pred             --C-C-CCEEEEecCCCCcccCCCccccccccccccc------------eeEEEecccCCC---CC-------CCCHHHH
Q 013217          108 --K-P-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRLDES---TG-------LVDYDML  161 (447)
Q Consensus       108 --~-p-gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~------------~~~~~~~~~~~~---~~-------~id~~~l  161 (447)
                        . + ..+|+...-.|.|... +      .+.+.+.            .+..++++....   .+       ...++++
T Consensus       135 ~~g~t~r~~il~~~~~yHG~t~-~------a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l  207 (460)
T PRK06105        135 ALGRPEKKKIISRQRGYHGVTI-A------SASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANEL  207 (460)
T ss_pred             hcCCCCCcEEEEecCccCCcch-h------heeccCCcccccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHHHHH
Confidence              1 2 3577877655433211 1      0111110            011122211000   00       0124667


Q ss_pred             HHHhhh---hCCcEEEEcCC-CCCC-CCC----hHHHHHHHHHhCCEEEEehhhh-ccccccccCCCCCC-cccEEEeCC
Q 013217          162 EKTAIL---FRPKLIIAGAS-AYPR-DFD----YPRMRQIADAVGALLMMDMAHI-SGLVAASVVADPFK-YCDVVTTTT  230 (447)
Q Consensus       162 ~~~~~~---~~~klii~~~~-~~~~-~~~----~~~i~~ia~~~g~~livD~a~~-~g~~~~~~~~~~~~-~~Di~~~s~  230 (447)
                      ++++..   .++.+||+.+- ...+ ..+    +++++++|++||+++|+|++|. .|-.....-..-.+ ..|+++++ 
T Consensus       208 e~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi~~~g-  286 (460)
T PRK06105        208 EALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGIKPDILVMS-  286 (460)
T ss_pred             HHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCCCCCeeeee-
Confidence            777642   24567777632 2223 334    7999999999999999999982 44332111000011 25888776 


Q ss_pred             CcccCCC--CCceEEeecCCcchhhHHHHhhhcc-----C-CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHH
Q 013217          231 HKSLRGP--RGGMIFFKKDPVLGVELESAINNAV-----F-PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCR  302 (447)
Q Consensus       231 ~K~l~Gp--~gG~i~~~~~~~~~~~~~~~i~~~~-----~-~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~  302 (447)
                       |.|+|.  +.|.+++++      ++.+.+....     + .+.+.+.+....++..++++.+.+++   +.+++.+..+
T Consensus       287 -K~lggG~~P~~av~~~~------~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~---l~~~v~~~g~  356 (460)
T PRK06105        287 -KQLSSSYQPLSAVLMNE------KVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEERD---LVGNAAERGA  356 (460)
T ss_pred             -cccccCcccceEEEEcH------HHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHH
Confidence             999653  567888877      6766654311     1 11111234444444445777776543   4677777778


Q ss_pred             HHHHHHHHC-CcEeeeC--CCCCeeEEecCCCCC-----CC-----HHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEE
Q 013217          303 ALASRLVEL-GYKLVSG--GSDNHLVLVDLRPMG-----ID-----GARVEKILDMASITLNKNSVPGDKSALVPGGIRI  369 (447)
Q Consensus       303 ~l~~~L~~~-g~~~~~~--~~~~~~~~v~~~~~~-----~~-----~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRi  369 (447)
                      +|.+.|++. ...++..  +. ..+.-+.+....     .+     ...+...+.++||.+...          ...+|+
T Consensus       357 ~l~~~L~~l~~~~~v~~vrG~-Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~~Gvl~~~~----------g~~i~l  425 (460)
T PRK06105        357 RLQARLRALADHPLVGEVRGV-GLIAAVELVADKATKTPFEPPGKVGARANAAAHEHGVISRAM----------GDTLAF  425 (460)
T ss_pred             HHHHHHHHhhcCCCeEEEEec-ceEEEEEEecCcccCCCCCchhHHHHHHHHHHHHCCeEEEec----------CCEEEE
Confidence            888877663 1222211  11 111223332110     00     235666778899998531          237999


Q ss_pred             ecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          370 GSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       370 g~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      +++...+    ++|++++.+.+.+++...
T Consensus       426 ~Ppl~it----~~eid~~~~~l~~~l~~~  450 (460)
T PRK06105        426 CPPLIIT----AAQVDEMVDRFGRALDDV  450 (460)
T ss_pred             ECCCccC----HHHHHHHHHHHHHHHHHH
Confidence            8886666    999999999999999754

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=99.43  E-value=4.2e-11  Score=110.22  Aligned_cols=309  Identities=17%  Similarity=0.188  Sum_probs=184.3

Q ss_pred             HHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCC--CcccCCCccccccccccccceeEEEec---
Q 013217           73 KRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH--GGHLSHGFMTPKRRVSGTSIYFESMPY---  147 (447)
Q Consensus        73 ~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~---  147 (447)
                      +.+++.||.+.     .+-++-|-.|-...+..++++|+.+...-+..  +.|+...    +..+...|..++-++.   
T Consensus        86 ~avkdifGfq~-----~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTT----r~h~~~ng~~~~n~~~~ea  156 (471)
T COG3033          86 DAVKDIFGFQY-----TIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTT----RGHIQINGATPRNVYVDEA  156 (471)
T ss_pred             HHHHHhcCcee-----eeeccCCccHHHHHHHHHhhhccccCCccccccccceecch----hHHHHhcCCcccccccccc
Confidence            45678899864     24345666666666777777776655422221  2222211    0111122221111111   


Q ss_pred             ---ccC-CCCCCCCHHHHHHHhhhh---CCcEEEEcCCCCC--C----CCChHHHHHHHHHhCCEEEEehhhhcccccc-
Q 013217          148 ---RLD-ESTGLVDYDMLEKTAILF---RPKLIIAGASAYP--R----DFDYPRMRQIADAVGALLMMDMAHISGLVAA-  213 (447)
Q Consensus       148 ---~~~-~~~~~id~~~l~~~~~~~---~~klii~~~~~~~--~----~~~~~~i~~ia~~~g~~livD~a~~~g~~~~-  213 (447)
                         .++ |-.|.+|++.|++++++-   +.-.|++.-++|+  +    ..++++..+||++|+++++.|++..+--.+. 
T Consensus       157 ~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFI  236 (471)
T COG3033         157 FDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFI  236 (471)
T ss_pred             ccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhh
Confidence               111 123679999999999863   3445665533443  2    3467899999999999999999864432111 


Q ss_pred             -----ccCCCCC--------CcccEEEeCCCcccCCCCCceEEeecCCcchhhHHHHhhh--ccCCC--CCCCCcHHHHH
Q 013217          214 -----SVVADPF--------KYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINN--AVFPG--LQGGPHNHTIG  276 (447)
Q Consensus       214 -----~~~~~~~--------~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~--~~~~~--~~g~p~~~~~a  276 (447)
                           +...+.+        .++|-++.|.-|--..+-||+++.+++.-  .++...+..  ....|  .+|+..--.+.
T Consensus       237 k~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lvnmGGfl~~~D~~~--fDvy~~~~~~~V~~eG~~tYGgl~Grdme  314 (471)
T COG3033         237 KQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLVNMGGFLCFKDDSF--FDVYEECRTLVVVQEGFPTYGGLAGRDME  314 (471)
T ss_pred             hhcCcccccccHHHHHHHHHhhhhhheeeccccceeccccEEEecCccH--HHHHHHHHhheEeeccccccCcccchhHH
Confidence                 1222222        36899999999976678899999998510  012222221  11111  24555556688


Q ss_pred             HHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCC--C-----CCHHHHHH-HHhhcCe
Q 013217          277 GLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPM--G-----IDGARVEK-ILDMASI  348 (447)
Q Consensus       277 al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~--~-----~~~~~~~~-~L~~~gI  348 (447)
                      ++++.|.+..+..   |.+...++.++|.+.|.+.|++++.+ ...|-+++|....  .     ..++.+.- +..+.||
T Consensus       315 alAvGL~e~~~~~---yl~~Rv~Qv~YL~~~l~~~GVpi~~p-aGGHavfvda~~~lphip~eqFpaqala~ely~e~Gi  390 (471)
T COG3033         315 ALAVGLREGVNFD---YLAHRVAQVQYLADGLEEAGVPIVQP-AGGHAVFVDAGKFLPHIPAEQFPAQALACELYKEAGI  390 (471)
T ss_pred             HHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHhcCCeeEec-CCCceEEeehhhhcCCCChhhCcHHHHHHHHHHHhCe
Confidence            8999998877654   46667788899999999999987654 3467777774321  1     22334443 4467888


Q ss_pred             EEcc-C--CCCCCC-CC----CCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHHH
Q 013217          349 TLNK-N--SVPGDK-SA----LVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITL  399 (447)
Q Consensus       349 ~v~~-~--~~p~~~-~~----~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~  399 (447)
                      ...- +  ..+.+. .+    -...-+|+..+.   |-.+.+.|+.+++.++++.++..
T Consensus       391 RavElG~~~~~rd~ktg~q~~~~~elvRltipR---rtYt~~HmD~V~~a~~~l~e~~~  446 (471)
T COG3033         391 RAVELGSFSLGRDPKTGKQHPPPAELVRLTIPR---RTYTQTHMDFVIEAFKALKENAE  446 (471)
T ss_pred             eeeeeeceecccCCCccccCCCchheeeEeccc---cccchhHHHHHHHHHHHHHhccc
Confidence            7542 2  122232 11    112359998664   33468999999999999888753

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.43  E-value=4.3e-10  Score=112.85  Aligned_cols=329  Identities=15%  Similarity=0.087  Sum_probs=172.4

Q ss_pred             CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh--cCCC
Q 013217           33 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKPH  110 (447)
Q Consensus        33 ~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al--~~pg  110 (447)
                      .|.|.+++...+....   +....++ ..+...    ...+++.+++.....+.  ....+||++|+.+++...  ....
T Consensus        60 ~p~v~~Ai~~ql~~~~---~~~~~~~-~~~~~~----~lae~L~~~~p~~~~~~--v~f~~SGseA~e~AiklAr~~tgr  129 (445)
T PRK08593         60 PPRVVEAIKAQADKFI---HYTPAYM-YHEPLV----RLAKKLCELAPGDFEKR--VTFGLSGSDANDGIIKFARAYTGR  129 (445)
T ss_pred             CHHHHHHHHHHHHhcc---Ccccccc-CCHHHH----HHHHHHHHhCCCCCCCE--EEECCchHHHHHHHHHHHHHhhCC
Confidence            6889988887775421   1111111 111112    22356777764321111  233589999999888743  2223


Q ss_pred             CEEEEecCCCCcccCCCc-ccc-----ccccccccceeEEEecccCCC--CCCCC-------HHHHHHHhhh----hCCc
Q 013217          111 DRIMGLDLPHGGHLSHGF-MTP-----KRRVSGTSIYFESMPYRLDES--TGLVD-------YDMLEKTAIL----FRPK  171 (447)
Q Consensus       111 d~Vl~~~~~~~~~~~~~~-~~~-----~~~~~~~g~~~~~~~~~~~~~--~~~id-------~~~l~~~~~~----~~~k  171 (447)
                      .+|+...-.|.|...... ...     +....-....+..++++-...  ....+       ++++++++..    .++.
T Consensus       130 ~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA  209 (445)
T PRK08593        130 PYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEVA  209 (445)
T ss_pred             CeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhcCCCceE
Confidence            567777655433310000 000     000000000112222221000  00111       2445444432    2566


Q ss_pred             EEEEcCC-CCCC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccCC--CCCC-cccEEEeCCCcccC-CCCCce
Q 013217          172 LIIAGAS-AYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPRGGM  241 (447)
Q Consensus       172 lii~~~~-~~~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~--~~~~-~~Di~~~s~~K~l~-Gp~gG~  241 (447)
                      +|++.+. ...+ ..+    +++|+++|++||+++|+|++|. |+-..+...  .-+. ..|++++  .|.++ |.++|+
T Consensus       210 avI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~t-g~GrtG~~~a~~~~gv~pDi~t~--gK~l~~G~p~ga  286 (445)
T PRK08593        210 CIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQ-GLGRTGKWSSISHFNITPDLMSF--GKSLAGGMPMSA  286 (445)
T ss_pred             EEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-CCCcCchHHHHHhcCCCCCEeee--cccccCCcccEE
Confidence            7777632 2223 233    7999999999999999999973 432222110  0011 2587755  59886 456788


Q ss_pred             EEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC--CcEeeeC-
Q 013217          242 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVSG-  318 (447)
Q Consensus       242 i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~-  318 (447)
                      +++++      ++.+.+....... +.+.+...+++..++++.+.++   +..+++.+..++|.+.|++.  ...++.. 
T Consensus       287 v~~~~------~i~~~~~~~~~~~-T~~~~pl~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~v~~v  356 (445)
T PRK08593        287 IVGRK------EIMESLEAPAHLF-TTGANPVSCAAALATIDMIEDE---SLLQRSAEKGEYARKRFDQWVSKYNFVGDV  356 (445)
T ss_pred             EEEcH------HHHhhhccCCCCC-CCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence            88887      6777664322112 2233445555555677776543   34666777777777777652  2222221 


Q ss_pred             -CCCCeeEEecCCCC---CC-C---HHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHH
Q 013217          319 -GSDNHLVLVDLRPM---GI-D---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADF  390 (447)
Q Consensus       319 -~~~~~~~~v~~~~~---~~-~---~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~  390 (447)
                       +..- +.-+.+...   .. +   ...+.+.|.++||.+...         ....+|+.++..+|    ++|++++.++
T Consensus       357 rG~Gl-~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~---------~~~~lr~~p~l~~t----~~~id~~~~~  422 (445)
T PRK08593        357 RGYGL-SIGIDIVSDKKLKTRDNEAALKICNYCFEHGVVIIAV---------AGNVLRFQPPLVIT----YEQLDTALNT  422 (445)
T ss_pred             eccce-EEEEEEecCCCcCCCcHHHHHHHHHHHHHCCeEEecc---------CCCEEEEECCCccC----HHHHHHHHHH
Confidence             1111 111222110   00 1   245677778899988431         12479999888777    9999999999


Q ss_pred             HHHHHHHH
Q 013217          391 IHEGVEIT  398 (447)
Q Consensus       391 i~~~l~~~  398 (447)
                      +++++...
T Consensus       423 l~~~l~~~  430 (445)
T PRK08593        423 IEQAFTAL  430 (445)
T ss_pred             HHHHHHHH
Confidence            99999754

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.43  E-value=3.7e-10  Score=112.87  Aligned_cols=328  Identities=14%  Similarity=0.063  Sum_probs=168.5

Q ss_pred             CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC-CCccceeeecCCcHHHHHHHHHHh--c
Q 013217           31 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVYTAI--L  107 (447)
Q Consensus        31 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~-~~~~~~~v~~~sGs~a~~~~~~al--~  107 (447)
                      +-.|.|.+++.+.+....   +...... ..+  ..+ +. .+++.+++... .+.   ....+||++|+.+++.-.  .
T Consensus        49 h~~p~v~~a~~~ql~~~~---~~~~~~~-~~~--~~~-~l-a~~l~~~~p~~~~~~---v~f~~sGseA~e~AlklAr~~  117 (420)
T TIGR00700        49 HSHPRVVDAVRTQVAEFT---HTCFMVT-PYE--GYV-AL-AEKLNRIAPGSGPKK---SVFFNSGAEAVENAVKIARSY  117 (420)
T ss_pred             CCCHHHHHHHHHHHHhcc---Ccccccc-CCh--HHH-HH-HHHHHHhCCCCCCCE---EEEeCCcHHHHHHHHHHHHHh
Confidence            347899999888776421   1111000 111  112 12 24566665321 121   244589999999887643  2


Q ss_pred             CCCCEEEEecCCCCcccCCCccc-------cccccccccceeEEEecccCCC--------CCCCCHHHHHHHhh----hh
Q 013217          108 KPHDRIMGLDLPHGGHLSHGFMT-------PKRRVSGTSIYFESMPYRLDES--------TGLVDYDMLEKTAI----LF  168 (447)
Q Consensus       108 ~pgd~Vl~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~~~~~~--------~~~id~~~l~~~~~----~~  168 (447)
                      ....+|+...-.|.|.-. +...       ........-.....++++....        ...-+++.+++.+.    ..
T Consensus       118 tgr~~ii~~~~~yHG~t~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (420)
T TIGR00700       118 TGRPGVVAFDHGFHGRTN-MTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVIDVGAN  196 (420)
T ss_pred             cCCCcEEEECCCcCCCcH-HHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHHHHhhcCCC
Confidence            234568777655433310 0000       0000000000011122221000        00012456666653    12


Q ss_pred             CCcEEEEcCC-CCCC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccCC--CCCC-cccEEEeCCCcccC-CCC
Q 013217          169 RPKLIIAGAS-AYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPR  238 (447)
Q Consensus       169 ~~klii~~~~-~~~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~--~~~~-~~Di~~~s~~K~l~-Gp~  238 (447)
                      ++.+||+.+- ..++ ..+    +++|.++|++||+++|+|+++ .|+...+...  ...+ ..|+++  ++|.++ |.+
T Consensus       197 ~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~-tg~gr~g~~~a~~~~~~~pDi~~--lsK~l~~G~p  273 (420)
T TIGR00700       197 NVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQ-TGFARTGAMFACEHEGPEPDLIT--TAKSLADGLP  273 (420)
T ss_pred             cEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecc-cCCcccchhHHHhhcCCCCCEEE--eeccccCCcc
Confidence            4567777632 1222 222    799999999999999999996 5553333110  0111 357776  569984 677


Q ss_pred             CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH----CC-c
Q 013217          239 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----LG-Y  313 (447)
Q Consensus       239 gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g-~  313 (447)
                      .|++++++      ++.+.+.......+.++ +....++..++++.+.+.++.   ++..+..+.+.+.|++    .+ +
T Consensus       274 ig~v~~~~------~i~~~~~~~~~~~T~~~-~pl~~aaa~a~l~~l~~~~~~---~~~~~~g~~l~~~L~~l~~~~~~~  343 (420)
T TIGR00700       274 LSGVTGRA------EIMDAPAPGGLGGTYAG-NPLACAAALAVLAIIESEGLI---ERARQIGRLVTDRLTTLKAVDPRI  343 (420)
T ss_pred             eEEEEecH------HHHhhcCCCCcCCCCCc-CHHHHHHHHHHHHHHHhccHH---HHHHHHHHHHHHHHHHHHhhCCCE
Confidence            79999987      67776654333233333 344444444567665554543   3344444445555544    22 2


Q ss_pred             EeeeCCCCCeeEEecCCCC--CC-C---HHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHH
Q 013217          314 KLVSGGSDNHLVLVDLRPM--GI-D---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAI  387 (447)
Q Consensus       314 ~~~~~~~~~~~~~v~~~~~--~~-~---~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l  387 (447)
                      ..+.+ . ..+.++.+...  .. +   ...+.+.+.++||.+.    |+..  + ...+|++++...+    ++++++.
T Consensus       344 ~~vrg-~-G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~----p~~~--f-~~~lRl~p~l~~~----~~~l~~~  410 (420)
T TIGR00700       344 GDVRG-L-GAMIAVELVDPGTTEPDAGLAERIATAAHAAGLLLL----TCGM--F-GNIIRFLPPLTIG----DELLSEG  410 (420)
T ss_pred             EEeec-c-ceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEe----ccCC--C-CCEEEEECCCCcC----HHHHHHH
Confidence            22222 2 23344544221  01 1   2345555678999984    3221  1 2589999776555    8999999


Q ss_pred             HHHHHHHHH
Q 013217          388 ADFIHEGVE  396 (447)
Q Consensus       388 ~~~i~~~l~  396 (447)
                      ++.|.+++.
T Consensus       411 ~~~l~~~l~  419 (420)
T TIGR00700       411 LDILCAILA  419 (420)
T ss_pred             HHHHHHHhh
Confidence            999988764

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.42  E-value=4.4e-10  Score=112.67  Aligned_cols=327  Identities=17%  Similarity=0.103  Sum_probs=169.5

Q ss_pred             CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh--cCCC
Q 013217           33 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKPH  110 (447)
Q Consensus        33 ~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al--~~pg  110 (447)
                      .|.|.+++.+.+.+......+  .+.  +    ..+....+++.+++.....+.  ...++||++|+.+++...  ....
T Consensus        72 ~p~v~~Ai~~ql~~~~~~~~~--~~~--~----~~~~~lAe~L~~~~p~~~~~~--v~f~~SGsEA~e~AlklAr~~tgr  141 (441)
T PRK05769         72 HPKVVKAVKEQAEKFLHYSLT--DFY--Y----EPAVELAERLVEIAPGGFEKK--VFFTNSGTESNEAAIKIARYHTGR  141 (441)
T ss_pred             CHHHHHHHHHHHHhccCccCc--ccC--C----HHHHHHHHHHHHhCCCCCCCE--EEECCchHHHHHHHHHHHHHHhCC
Confidence            588888888777642100110  111  1    122223356666664211111  234689999999887643  2234


Q ss_pred             CEEEEecCCCCcccC-CCcc-----ccccccccccceeEEEecccC---C---CCC----CCCHHHHHH-Hhh----hhC
Q 013217          111 DRIMGLDLPHGGHLS-HGFM-----TPKRRVSGTSIYFESMPYRLD---E---STG----LVDYDMLEK-TAI----LFR  169 (447)
Q Consensus       111 d~Vl~~~~~~~~~~~-~~~~-----~~~~~~~~~g~~~~~~~~~~~---~---~~~----~id~~~l~~-~~~----~~~  169 (447)
                      ++|+...-.|.|.-. ....     .......-....+..++++..   +   .+.    .-+.+.+++ +++    ..+
T Consensus       142 ~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~  221 (441)
T PRK05769        142 KYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEE  221 (441)
T ss_pred             CeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCc
Confidence            678877655433310 0000     000000000001122222110   0   000    012344555 322    124


Q ss_pred             CcEEEEcCC-CCCC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccC-CCCC
Q 013217          170 PKLIIAGAS-AYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLR-GPRG  239 (447)
Q Consensus       170 ~klii~~~~-~~~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~-Gp~g  239 (447)
                      +.+|++.+- ...+ ..+    +++|.++|++||+++|+|++|. |+...+.. . ..++ ..|++++|  |.++ |.+.
T Consensus       222 iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~t-G~gr~G~~~a~~~~gv~pDivt~~--K~l~~G~p~  298 (441)
T PRK05769        222 VAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQT-GMGRTGKMFAIEHFGVEPDIITLA--KAIAGGLPL  298 (441)
T ss_pred             eEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-CCCcccceehhhccCCCCCEEEEc--ccccCCccc
Confidence            566776521 1222 455    8999999999999999999985 54333321 0 1111 25888754  9885 4556


Q ss_pred             ceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCC--cEeee
Q 013217          240 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG--YKLVS  317 (447)
Q Consensus       240 G~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~~~~  317 (447)
                      |++++++      ++.+.... ...++.++ +...+++..++++.+.+    +..+++.+..++|++.|++..  +.++.
T Consensus       299 gav~~~~------~i~~~~~~-~~~~T~~g-~p~~~aaa~a~L~~l~~----~~~~~~~~~g~~l~~~L~~l~~~~~~~~  366 (441)
T PRK05769        299 GAVIGRA------ELMFLPPG-SHANTFGG-NPVAAAAALATLEELEE----GLLENAQKLGEYLRKELKELKEKYEFIG  366 (441)
T ss_pred             EEEEEeh------hhhhcCCC-CCCCCCCc-CHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence            8888887      55443321 12222232 44445555556776643    456777778888888886632  22222


Q ss_pred             CCC-CCeeEEecCCCC-C-C---CHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217          318 GGS-DNHLVLVDLRPM-G-I---DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  391 (447)
Q Consensus       318 ~~~-~~~~~~v~~~~~-~-~---~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i  391 (447)
                      ... ...+.-+.+... . -   ....+.+.|.++||.+...         ....+|++++...|    ++|++++.+++
T Consensus       367 ~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gil~~~~---------~~~~lr~~p~l~~t----~~~id~~~~~l  433 (441)
T PRK05769        367 DVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAFKRGLLLLGA---------GKSAIRIIPPLIIT----EEEADIGLEIL  433 (441)
T ss_pred             eeecceEEEEEEeccCCccccHHHHHHHHHHHHhCCcEEecC---------CCCEEEEeCCCCCC----HHHHHHHHHHH
Confidence            111 112222333211 0 0   1234666777899998421         13479999887777    99999999999


Q ss_pred             HHHHHH
Q 013217          392 HEGVEI  397 (447)
Q Consensus       392 ~~~l~~  397 (447)
                      ++++..
T Consensus       434 ~~~l~~  439 (441)
T PRK05769        434 EEAIKE  439 (441)
T ss_pred             HHHHHH
Confidence            998863

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.42  E-value=6.5e-10  Score=110.82  Aligned_cols=320  Identities=13%  Similarity=0.102  Sum_probs=168.1

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc--CC
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--KP  109 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~--~p  109 (447)
                      -.|.|.+++.+.+.+....+.       ..+  ...  ...+++.++++...+.   ....+||++|+..++....  ..
T Consensus        70 ~~p~v~~ai~~q~~~~~~~~~-------~~~--~~~--~la~~L~~~~~~~~~~---v~f~~SGsEA~e~AiklAr~~tg  135 (433)
T PRK00615         70 SHPKICDAIQQGAERGTSYGL-------TSE--QEI--LFAEELFSYLGLEDHK---IRFVSSGTEATMTAVRLARGITG  135 (433)
T ss_pred             CCHHHHHHHHHHHHhCCCCCC-------CCH--HHH--HHHHHHHHhCCCCcCE---EEEeCchHHHHHHHHHHHHHhhC
Confidence            378888888887764211111       111  111  2234666666543221   2345899999998876442  22


Q ss_pred             CCEEEEecCCCCcccCCCcccccccccccccee----EEE-ecccCCCC---CCCCHHHHHHHhhhh--CCcEEEEcCC-
Q 013217          110 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYF----ESM-PYRLDEST---GLVDYDMLEKTAILF--RPKLIIAGAS-  178 (447)
Q Consensus       110 gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~-~~~~~~~~---~~id~~~l~~~~~~~--~~klii~~~~-  178 (447)
                      ..+|+...-.|.|.-....  .  .+...+...    ... +-...+..   ..-|++++++.+..+  ++.+||+.+- 
T Consensus       136 r~~ii~~~~~yHG~td~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavI~Epv~  211 (433)
T PRK00615        136 RSIIIKFLGCYHGHADTLL--Q--GISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAGVIFEPIC  211 (433)
T ss_pred             CCEEEEEcCccCCCCcccC--c--ccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhcCCceEEEEECCCC
Confidence            3577776655444210000  0  111111000    000 00000000   123788999888643  3456666521 


Q ss_pred             CCCC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC--CCCCC-cccEEEeCCCcccC-CCCCceEEeecCCc
Q 013217          179 AYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTTTHKSLR-GPRGGMIFFKKDPV  249 (447)
Q Consensus       179 ~~~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~--~~~~~-~~Di~~~s~~K~l~-Gp~gG~i~~~~~~~  249 (447)
                      ...+ ..+    +++|.++|++||+++|+|++| .|+ ..+..  ..-++ ..|++++  .|.|+ |.++|++++++   
T Consensus       212 ~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~-tG~-R~G~~ga~~~~gv~PDi~~~--gK~lggG~p~~av~~~~---  284 (433)
T PRK00615        212 ANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVV-TGF-RVAQGGAAAIYHVKPDITVY--GKILGGGLPAAAVVAHK---  284 (433)
T ss_pred             CCCCcccCCHHHHHHHHHHHHHcCCEEEEEccc-ccc-cccHhHHHHhcCCCCCeEEE--cccccCCcceeeeeecH---
Confidence            1222 333    469999999999999999998 565 22210  00011 2588764  69996 44578888888   


Q ss_pred             chhhHHHHhhhc--cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH----CCcEeeeCCCCCe
Q 013217          250 LGVELESAINNA--VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----LGYKLVSGGSDNH  323 (447)
Q Consensus       250 ~~~~~~~~i~~~--~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~~~~  323 (447)
                         ++.+.+...  .+.+..-+.++..+++..++++.+.++.   ..+++.++.++|.+.|++    .|+.+..... ..
T Consensus       285 ---~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~~~---~~~~~~~~g~~l~~~l~~~~~~~g~~v~~~r~-G~  357 (433)
T PRK00615        285 ---SIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQG---FYTQLSTLEQNFLSPIEEMIRSQGFPVSLVRY-GS  357 (433)
T ss_pred             ---HHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHcCCCeEEEee-ce
Confidence               677766431  1111111235555666666777765443   356666667777665544    4554322111 11


Q ss_pred             eEEecCCCCC---C------C---HHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217          324 LVLVDLRPMG---I------D---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  391 (447)
Q Consensus       324 ~~~v~~~~~~---~------~---~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i  391 (447)
                      ++-+.+....   +      +   ...+.+.|.++||.+.....|       ...+    ...++    ++|++++++++
T Consensus       358 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~-------~~~l----s~~ht----~~did~~~~a~  422 (433)
T PRK00615        358 MFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSKGVYLSPSPFE-------ASFL----SSAHS----MENLDYAQNVL  422 (433)
T ss_pred             EEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHCCeeecCcccc-------ccce----ecCCC----HHHHHHHHHHH
Confidence            2222332111   0      1   124667778899998532111       0112    22334    99999999999


Q ss_pred             HHHHHHH
Q 013217          392 HEGVEIT  398 (447)
Q Consensus       392 ~~~l~~~  398 (447)
                      .+++...
T Consensus       423 ~~~~~~~  429 (433)
T PRK00615        423 IDSLEKV  429 (433)
T ss_pred             HHHHHHH
Confidence            9998754

>PRK06062 hypothetical protein; Provisional

Probab=99.41  E-value=4.8e-10  Score=112.66  Aligned_cols=319  Identities=13%  Similarity=0.068  Sum_probs=168.5

Q ss_pred             CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh--cCCC
Q 013217           33 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKPH  110 (447)
Q Consensus        33 ~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al--~~pg  110 (447)
                      .|.|.+++.+.+..- ....+  .+ . .+    ......+++.+++....+.   ....+||++|+.+++...  ....
T Consensus        71 ~p~v~~Ai~~q~~~~-~~~~~--~~-~-~~----~~~~lae~L~~~~p~~~~~---v~f~~SGsEAve~AlklAr~~tgr  138 (451)
T PRK06062         71 HPKVVAAIQEQAARL-CTVAP--AH-A-ND----ARSEAARLIAERAPGDLSK---VFFTNGGADANEHAVRMARLHTGR  138 (451)
T ss_pred             CHHHHHHHHHHHHhc-CCcCC--cc-C-CH----HHHHHHHHHHHhCCCCCCE---EEEcCChHHHHHHHHHHHHHhhCC
Confidence            688888887776541 11111  11 1 11    1112234566665422221   234689999999887653  2234


Q ss_pred             CEEEEecCCCCcccCCCccccccccccccc-----------eeEEEecccCCC-CC--CCC-------HHHHHHHhhh--
Q 013217          111 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-----------YFESMPYRLDES-TG--LVD-------YDMLEKTAIL--  167 (447)
Q Consensus       111 d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~-----------~~~~~~~~~~~~-~~--~id-------~~~l~~~~~~--  167 (447)
                      .+|+...-.|.|... +      .+...+.           .+..++++.... .+  .-|       +++++++++.  
T Consensus       139 ~~ii~~~~~yHG~t~-~------als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~  211 (451)
T PRK06062        139 PKVLSAYRSYHGGTG-S------AINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIELEG  211 (451)
T ss_pred             ceEEEEeCCCCCCCH-H------HHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhcC
Confidence            678877655433310 0      0001110           011111111000 00  012       6777887753  


Q ss_pred             -hCCcEEEEcCC-CCCC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccCCC
Q 013217          168 -FRPKLIIAGAS-AYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRGP  237 (447)
Q Consensus       168 -~~~klii~~~~-~~~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~Gp  237 (447)
                       .++.+|++.+- ...+ ..+    +++++++|++||+++|+|++|. |+--.+.. . .-++ ..|+++++  |.|+|.
T Consensus       212 ~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~t-GfGRtG~~~a~~~~gv~PDi~t~g--K~lggG  288 (451)
T PRK06062        212 PSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMA-GFGRTGKWFAIEHFGVVPDLITFA--KGVNSG  288 (451)
T ss_pred             CCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeecccc-CCCcCcHHHHHHhcCCCCCeeeec--hhhhcC
Confidence             23566777631 2223 445    7999999999999999999984 43222211 0 0011 35888765  999752


Q ss_pred             --CCceEEeecCCcchhhHHHHhhhcc-CC-CCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHH-HHHHHHHHHC-
Q 013217          238 --RGGMIFFKKDPVLGVELESAINNAV-FP-GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNC-RALASRLVEL-  311 (447)
Q Consensus       238 --~gG~i~~~~~~~~~~~~~~~i~~~~-~~-~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~-~~l~~~L~~~-  311 (447)
                        +.|.+++++      ++.+.+.... .. +++++ +...+++..++++.+.++++   .++..+.. .+|.+.|++. 
T Consensus       289 ~~Pigav~~~~------~i~~~~~~~~~~~~~T~~g-npl~~Aaa~a~L~~l~~~~l---~~~~~~~G~~~l~~~L~~l~  358 (451)
T PRK06062        289 YVPLGGVAISE------AIAATFADRPYPGGLTYSG-HPLACAAAVATINAMEEEGI---VENAARIGAEVLGPGLRELA  358 (451)
T ss_pred             CcCcEEEEEcH------HHHHHhccCCCCCCCCCCC-CHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHH
Confidence              456666666      6766664321 12 22222 45556665667777765443   44444444 3555555541 


Q ss_pred             -CcEeee--CCCCCeeEEecCCCC-----CC--------CHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccc
Q 013217          312 -GYKLVS--GGSDNHLVLVDLRPM-----GI--------DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMT  375 (447)
Q Consensus       312 -g~~~~~--~~~~~~~~~v~~~~~-----~~--------~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~  375 (447)
                       .+..+.  .+... +.-+.+...     ..        ....+.+.|.++||.+..   +       ...+|+.++..+
T Consensus       359 ~~~~~v~~vrG~Gl-~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~---~-------~~~lrl~ppl~~  427 (451)
T PRK06062        359 ERHPSVGEVRGLGV-FWALELVADRETREPLAPYGASSAAMAAVKAACKERGLLPFV---N-------GNRIHVVPPCTV  427 (451)
T ss_pred             hcCCcEEeEecccc-EEEEEEcccccccCCCcccchhhHHHHHHHHHHHHCCcEEee---c-------CCEEEEECCccC
Confidence             122211  11112 122222110     00        123577778889998742   1       247999988777


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHH
Q 013217          376 TRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       376 ~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      +    ++|++++.+++++++...
T Consensus       428 t----~~eid~~~~~l~~~l~~~  446 (451)
T PRK06062        428 T----EDEVREGLAILDAALAVA  446 (451)
T ss_pred             C----HHHHHHHHHHHHHHHHHh
Confidence            7    999999999999998754

>PRK07046 aminotransferase; Validated

Probab=99.41  E-value=5.6e-10  Score=112.06  Aligned_cols=314  Identities=14%  Similarity=0.104  Sum_probs=169.3

Q ss_pred             CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh--cCCC
Q 013217           33 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKPH  110 (447)
Q Consensus        33 ~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al--~~pg  110 (447)
                      .|.|.+++.+.+......+.+       +    ..+....+++.++++.+.     ...++|||+|+..++...  ....
T Consensus        93 ~p~i~~Av~~q~~~~~~~~~~-------~----~~~~~lAe~l~~~~~~~~-----v~F~nSGtEA~e~AlrlAR~~TGr  156 (453)
T PRK07046         93 PAPVARALAEQARRGLTTMLP-------S----EDAAWVGEELARRFGLPY-----WQVATTATDANRFVLRWARAVTGR  156 (453)
T ss_pred             CHHHHHHHHHHHHhCCCCCCC-------C----HHHHHHHHHHHHHhCCCE-----EEEECCHHHHHHHHHHHHHHhhCC
Confidence            588888888777653211111       1    222233456777776443     233689999998887654  2234


Q ss_pred             CEEEEecCCCCcccCCCccccc--cc---ccccccee----EEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCC-CC
Q 013217          111 DRIMGLDLPHGGHLSHGFMTPK--RR---VSGTSIYF----ESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS-AY  180 (447)
Q Consensus       111 d~Vl~~~~~~~~~~~~~~~~~~--~~---~~~~g~~~----~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~-~~  180 (447)
                      ++|+...-.|.|..........  ..   -...|...    .+..++      .-|++++++.+...+..+||+.+- .+
T Consensus       157 ~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~nd~~~l~~~l~~~~vAavi~EPi~g~  230 (453)
T PRK07046        157 PKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVE------FNDLAALEAALADGDVAAVLAEPAMTN  230 (453)
T ss_pred             CEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeC------CCCHHHHHHHhCCCCeEEEEECCCCCC
Confidence            6788877555443100000000  00   00001000    011111      138899998886446677887632 22


Q ss_pred             CC-CC-C---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-cccEEEeCCCcccC-CCCCceEEeecCCcchhh
Q 013217          181 PR-DF-D---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLR-GPRGGMIFFKKDPVLGVE  253 (447)
Q Consensus       181 ~~-~~-~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-~~Di~~~s~~K~l~-Gp~gG~i~~~~~~~~~~~  253 (447)
                      .+ .. +   +++++++|+++|+++|+|+++..+.-..+.. .-++ ..|++++  .|.++ |.+.|.+.+++      +
T Consensus       231 ~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~~-~~~gv~PDi~t~--gK~lggG~Pi~av~g~~------~  301 (453)
T PRK07046        231 IGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGYT-RAHGLEPDFLVV--GKPIAGGVPCAVYGFSA------E  301 (453)
T ss_pred             CCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcchh-HHhCCCccceee--hhhhcCCCcceeeeehH------H
Confidence            23 22 2   6899999999999999999985221111111 1011 2588876  59986 44458888887      6


Q ss_pred             HHHHhhhccC---CC---CCC--CCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH----CCcEeeeCCCC
Q 013217          254 LESAINNAVF---PG---LQG--GPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----LGYKLVSGGSD  321 (447)
Q Consensus       254 ~~~~i~~~~~---~~---~~g--~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~~  321 (447)
                      +.+.+.....   .+   ..+  +.++..+++..+.++.+.+++   ..++..+..++|.+.|++    .++.....+..
T Consensus       302 i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~~---~~~~~~~~g~~l~~~L~~l~~~~~~~~~v~g~G  378 (453)
T PRK07046        302 LAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEA---AYAHMLALAARLAAGLRAVIARHGLPWHVTRVG  378 (453)
T ss_pred             HHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            7776653110   01   112  234455555556777665544   355666666777776654    34332111111


Q ss_pred             CeeEEecCCC-CC---------CCH---HHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHH
Q 013217          322 NHLVLVDLRP-MG---------IDG---ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIA  388 (447)
Q Consensus       322 ~~~~~v~~~~-~~---------~~~---~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~  388 (447)
                      .. +.+.+.. ..         .+.   ..+...|.++||.+..    .      ...++++++  ++    ++|+++++
T Consensus       379 ~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~----~------~~~~~~~p~--~t----~~did~~~  441 (453)
T PRK07046        379 AR-VEFQFAPTPPRNGAEAAAALDPELEAALHLYLLNRGVLITP----F------HNMMLVCPA--TT----AADVDRLV  441 (453)
T ss_pred             cE-EEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHHCCCEEec----c------cCcEEEeCC--CC----HHHHHHHH
Confidence            22 2222211 00         011   2345566778998842    1      124777753  44    99999999


Q ss_pred             HHHHHHHHH
Q 013217          389 DFIHEGVEI  397 (447)
Q Consensus       389 ~~i~~~l~~  397 (447)
                      +++.+++..
T Consensus       442 ~~~~~~l~~  450 (453)
T PRK07046        442 AAFDACLGE  450 (453)
T ss_pred             HHHHHHHHH
Confidence            999998864

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=99.40  E-value=4.8e-13  Score=125.73  Aligned_cols=243  Identities=18%  Similarity=0.240  Sum_probs=55.1

Q ss_pred             CCCCHHHHHHHhhhhhc----cC--CCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHH
Q 013217           30 NFTSRAVMEAVGSCLTN----KY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY  103 (447)
Q Consensus        30 n~~~~~v~~a~~~~~~~----~~--~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~  103 (447)
                      .++++++.+++.....+    .|  ..|-.|.||       +.++    +.+++++|++..     +.+.+.+.|++.++
T Consensus        16 s~l~~~a~~a~~~~a~~Y~nLE~dl~~G~Rg~R~-------~~v~----~ll~~ltgAeaA-----~VvNnnaAAv~L~l   79 (367)
T PF03841_consen   16 SPLSEEAIEAVAEVASGYSNLEYDLETGKRGSRY-------AHVE----ELLCELTGAEAA-----LVVNNNAAAVLLAL   79 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccc-------cccc----cccccccccccc-----cccccccccccccc
Confidence            35678888887655433    11  124444443       2344    567889999864     22355567777777


Q ss_pred             HHhcCCCCEEEEecC---CCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC
Q 013217          104 TAILKPHDRIMGLDL---PHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG-ASA  179 (447)
Q Consensus       104 ~al~~pgd~Vl~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~-~~~  179 (447)
                      .++. +|.+|++.--   +.||.+...     ..+..+|.  +.+.++..   ..-.+++.++++.+ +|.+++-. .||
T Consensus        80 ~~la-~~~EvIvsRGelVeiGgsFRip-----~vm~~sGa--~lvEVGtt---N~t~~~Dye~AI~e-~Ta~ll~Vh~Sn  147 (367)
T PF03841_consen   80 NTLA-KGKEVIVSRGELVEIGGSFRIP-----DVMRQSGA--RLVEVGTT---NRTHLSDYEKAITE-NTAALLKVHTSN  147 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccc-cccccccccccccccccccccc-----cccccccc--cccccccc---cccccccccccccc-cccccccccccc
Confidence            7765 5667776432   234432211     23445554  55565542   34567788889988 88887554 466


Q ss_pred             CC-----CCCChHHHHHHHHHhCCEEEEehhhhcccccc----ccC--CC---CC-CcccEEEeCCCcccCCCCCceEEe
Q 013217          180 YP-----RDFDYPRMRQIADAVGALLMMDMAHISGLVAA----SVV--AD---PF-KYCDVVTTTTHKSLRGPRGGMIFF  244 (447)
Q Consensus       180 ~~-----~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~----~~~--~~---~~-~~~Di~~~s~~K~l~Gp~gG~i~~  244 (447)
                      |-     ...+++++.++|++||+++++|..  +|....    ++.  ++   -+ .++|+++||+.|.|+||+.|+|++
T Consensus       148 ~~i~GFt~~~~~~el~~la~~~~lp~i~Dlg--sG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQaGiI~G  225 (367)
T PF03841_consen  148 FRIQGFTGEVSLEELAELAKEHGLPVIVDLG--SGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGPQAGIIVG  225 (367)
T ss_dssp             -------------HHHHHHHHHT--EEEE-T--THHHHHHHTT----------CCCCT-SEEEEETTSSSSS-S-EEEEE
T ss_pred             cccccccccccHHHHHHHHhhcCCcEEEECC--CCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCCCeEEEEe
Confidence            63     256899999999999999999986  443321    111  11   12 269999999999999999999999


Q ss_pred             ecCCcchhhHHHHhhhccC-CCCCCCCcHHHHHHHHHHHHHhcChh-----------HHHHHHHHHHHHHHHHHHHHH
Q 013217          245 KKDPVLGVELESAINNAVF-PGLQGGPHNHTIGGLAVCLKHAQSPE-----------FKVYQNKVVSNCRALASRLVE  310 (447)
Q Consensus       245 ~~~~~~~~~~~~~i~~~~~-~~~~g~p~~~~~aal~~al~~~~~~~-----------~~~~~~~~~~~~~~l~~~L~~  310 (447)
                      ++      ++++++++... ..+  -..-..++++.++++....++           +..-.+.+.++++.|...|..
T Consensus       226 kk------~lI~~lk~~pl~Ral--rvdK~tla~L~atL~~Y~~~~~~~~~ip~l~ml~~~~~~L~~rA~~l~~~l~~  295 (367)
T PF03841_consen  226 KK------ELIEKLKKHPLGRAL--RVDKLTLAALEATLRLYLDPDKAKEEIPTLRMLTQSLEELRARAERLAAQLKA  295 (367)
T ss_dssp             EH------HHHHHHHHHHHTTT---B--HHHHHHHHHHHHH-------------------------------------
T ss_pred             CH------HHHHHHhhCCCcceE--eeCHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccc
Confidence            99      78888765311 111  113356788888887655311           122234455556666666655

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.39  E-value=7.3e-10  Score=110.36  Aligned_cols=211  Identities=15%  Similarity=0.079  Sum_probs=128.6

Q ss_pred             HHHHHHhhhhCCcEEEEcCC--CCCC-----CCChHHHHHHHHHhCCEEEEehhhhccccccccC-CC-CCC-cccEEEe
Q 013217          159 DMLEKTAILFRPKLIIAGAS--AYPR-----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV-AD-PFK-YCDVVTT  228 (447)
Q Consensus       159 ~~l~~~~~~~~~klii~~~~--~~~~-----~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~~-~~~-~~Di~~~  228 (447)
                      +.+++++.+ ++.+||+.+-  ..++     ...+++++++|++||+++|+|++| .|+-..+.. .. ..+ ..|++++
T Consensus       191 ~~~~~~~~~-~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~-tG~GrtG~~~a~~~~gv~PDi~t~  268 (422)
T PRK05630        191 RSLELLIDE-TVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIA-TGFGRTGELFATLAAGVTPDIMCV  268 (422)
T ss_pred             HHHHHHHhh-ceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecce-eCCCcCchhhHHHhcCCCCCeeee
Confidence            344555543 6778887742  2222     223689999999999999999998 555322211 00 011 2588855


Q ss_pred             CCCcccCC--CCCceEEeecCCcchhhHHHHhhhc-----cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHH
Q 013217          229 TTHKSLRG--PRGGMIFFKKDPVLGVELESAINNA-----VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNC  301 (447)
Q Consensus       229 s~~K~l~G--p~gG~i~~~~~~~~~~~~~~~i~~~-----~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~  301 (447)
                        .|.++|  +++|++++++      ++.+.+...     ...+.+-+.+...+++..++++.+.++++   .+++.+..
T Consensus       269 --gK~l~gG~~p~~av~~~~------~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~~---~~~~~~~g  337 (422)
T PRK05630        269 --GKALTGGFMSFAATLCTD------KVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMW---RKQVKRIE  337 (422)
T ss_pred             --echhhcCccccceeeccH------HHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhCcH---HHHHHHHH
Confidence              599954  5778888887      676665421     11111112355566666667887765433   45666777


Q ss_pred             HHHHHHHHHC-CcEeeeCCC-CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCC
Q 013217          302 RALASRLVEL-GYKLVSGGS-DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGF  379 (447)
Q Consensus       302 ~~l~~~L~~~-g~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~  379 (447)
                      ++|.+.|++. ....+.+-. ...+.-+.+... .+...+.+.+.++||.+...          ...+|+.++...+   
T Consensus       338 ~~l~~~L~~l~~~~~v~~vRg~Gl~~~ie~~~~-~~~~~~~~~~~~~Gl~~~~~----------g~~l~~~PpL~it---  403 (422)
T PRK05630        338 AELIAGLSPLAHLPGVADVRVLGAIGVVEMEQP-VDMEEATQAAVDHGVWLRPF----------GRLVYVMPPYITT---  403 (422)
T ss_pred             HHHHHHHHHhhcCCCeeeeeccccEEEEEECCc-ccHHHHHHHHHHCCeEEEec----------CCEEEEECCccCC---
Confidence            7777777642 111122100 123333444321 13457778888999998531          2479998877666   


Q ss_pred             CHHHHHHHHHHHHHHHHH
Q 013217          380 SEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       380 ~~~di~~l~~~i~~~l~~  397 (447)
                       ++|++++.+++++++..
T Consensus       404 -~~~i~~~~~~l~~al~~  420 (422)
T PRK05630        404 -SEQIAQICAALAAAVKA  420 (422)
T ss_pred             -HHHHHHHHHHHHHHHhc
Confidence             99999999999998863

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.38  E-value=1.3e-09  Score=109.97  Aligned_cols=325  Identities=15%  Similarity=0.102  Sum_probs=167.2

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh--cCC
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP  109 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al--~~p  109 (447)
                      -.|.|.+++.+.+.+..   +.+...+. .    ..+....+++.+++.....+.  ...++||++|+.+++...  ...
T Consensus        71 ~~p~v~~ai~~q~~~~~---~~~~~~~~-~----~~~~~la~~L~~~~p~~~~~~--v~f~~sGseA~e~AlklAr~~tg  140 (451)
T PRK06918         71 SHPKVKEALHKQVDQYI---HTGFNVMM-Y----EPYIELAEKLAALAPGSFDKK--VLFLNSGAEAVENAVKIARKYTK  140 (451)
T ss_pred             CCHHHHHHHHHHHHhcc---Cccccccc-c----HHHHHHHHHHHHhCCCCCCCE--EEEcCCcHHHHHHHHHHHHHHhC
Confidence            36888888887776421   11110000 1    112223356777764321111  244689999999887643  223


Q ss_pred             CCEEEEecCCCCcccCCCccccccccccccc-------------eeEEEecccCC--CCCCCC-------HHHHHHHhh-
Q 013217          110 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-------------YFESMPYRLDE--STGLVD-------YDMLEKTAI-  166 (447)
Q Consensus       110 gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~--~~~~id-------~~~l~~~~~-  166 (447)
                      ..+|+...-.|.|... +      .+.+.+.             .+..++++...  ..+..+       .+.+++.+. 
T Consensus       141 r~~ii~~~~~yHG~t~-~------~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (451)
T PRK06918        141 RQGIISFSRGFHGRTL-M------TMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFIS  213 (451)
T ss_pred             CCcEEEECCCcCccch-h------hhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHh
Confidence            4568777655433311 0      0011110             01112222110  001100       123343332 


Q ss_pred             ---hhCCcEEEEcCC-CCCC--C--CC-hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC----cccEEEeCCCcc
Q 013217          167 ---LFRPKLIIAGAS-AYPR--D--FD-YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKS  233 (447)
Q Consensus       167 ---~~~~klii~~~~-~~~~--~--~~-~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~----~~Di~~~s~~K~  233 (447)
                         ..++.+|++.+. ..++  .  .+ +++|.++|++||+++|+|+++ .|+...+.. .++.    ..|++  +++|.
T Consensus       214 ~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~-tg~gr~g~~-~a~~~~~v~pDi~--t~sK~  289 (451)
T PRK06918        214 EVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQ-TGFARTGKY-FAIEHFDVVPDLI--TVSKS  289 (451)
T ss_pred             hcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccc-cCcCccCce-ehhHhcCCCCCEE--eeehh
Confidence               224566776532 1222  1  12 789999999999999999996 555433321 1111    25755  56799


Q ss_pred             cC-CCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-
Q 013217          234 LR-GPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-  311 (447)
Q Consensus       234 l~-Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-  311 (447)
                      ++ |.+.|++++++      ++.+.+......++.++ +....++..++++.+.+.++.+   ++.+..+.+.+.|++. 
T Consensus       290 l~~G~pig~v~~~~------~i~~~~~~~~~~~T~~g-~~l~~aaa~a~l~~i~~~~~~~---~~~~~g~~l~~~l~~l~  359 (451)
T PRK06918        290 LGAGVPISGVIGRK------EIMDESAPGELGGTYAG-SPLGCAAALAVLDIIEKENLND---RAIELGKVVMNRFEEMK  359 (451)
T ss_pred             hcCCCccEEEEEcH------HHHhccCCCCcCcCCCc-CHHHHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHHHHH
Confidence            84 66779999987      67776654332223333 3444444444666665444433   3444445555555441 


Q ss_pred             -CcEeee--CCCCCeeEEecCCCC--CC----CHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHH
Q 013217          312 -GYKLVS--GGSDNHLVLVDLRPM--GI----DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEK  382 (447)
Q Consensus       312 -g~~~~~--~~~~~~~~~v~~~~~--~~----~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~  382 (447)
                       ...++.  .+....+.|....+.  ..    ....+.+.|.++||.+..    +..  + .+.+|++++...+    ++
T Consensus       360 ~~~~~~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gvlv~~----~~~--~-~~~lrl~p~l~~t----~~  428 (451)
T PRK06918        360 NKYNCIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEANKRGLLLLS----AGT--Y-GNVIRVLMPLVIT----DE  428 (451)
T ss_pred             hhCCCceeeccceeEEEEEEccCCCcCCCcHHHHHHHHHHHHHCCeEEee----cCC--C-CCEEEEECCCccC----HH
Confidence             222211  122233333221110  11    134456666789999843    211  1 2579999876555    99


Q ss_pred             HHHHHHHHHHHHHHHH
Q 013217          383 EFVAIADFIHEGVEIT  398 (447)
Q Consensus       383 di~~l~~~i~~~l~~~  398 (447)
                      +++++.++|.+++...
T Consensus       429 ~id~~l~~l~~~l~~~  444 (451)
T PRK06918        429 QLEEGLTIIEESLQAC  444 (451)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998754

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.38  E-value=2e-09  Score=108.14  Aligned_cols=322  Identities=11%  Similarity=0.068  Sum_probs=174.5

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc----
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  107 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~----  107 (447)
                      -.|.|.+++...+.+ ....... . +. .+  ..+  ...+++.++++...+.   ...++||++|+.+++....    
T Consensus        71 ~~p~v~~Ai~~ql~~-~~~~~~~-~-~~-~~--~~~--~lAe~L~~~~p~~~~~---v~f~~sGseAve~AlKlA~~~~~  139 (453)
T PRK06943         71 ANPRINAALKDQLDT-LEHAMLA-G-CT-HE--PAI--ELAERLAALTGGTLGH---AFFASDGASAVEIALKMSFHAWR  139 (453)
T ss_pred             CCHHHHHHHHHHHHh-cCCcccc-c-cC-CH--HHH--HHHHHHHHhCCCCCCE---EEEeCCCHHHHHHHHHHHHHHHH
Confidence            478888888877754 1111110 0 11 11  112  2235666666533221   2335899999998876541    


Q ss_pred             ---CC-CCEEEEecCCCCcccCCCccccccccccccc------------eeEEEecccCCCC--C-------CCCHHHHH
Q 013217          108 ---KP-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRLDEST--G-------LVDYDMLE  162 (447)
Q Consensus       108 ---~p-gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~------------~~~~~~~~~~~~~--~-------~id~~~l~  162 (447)
                         .+ ..+|+...-.|.|... +      .+.+++.            .+..++++.....  .       .-|+++++
T Consensus       140 ~rg~~~r~~Ii~~~~~yHG~t~-g------als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~  212 (453)
T PRK06943        140 NRGRGDKREFVCLANGYHGETI-G------ALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVR  212 (453)
T ss_pred             HhCCCCCCEEEEECCCcCCCcH-H------hhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHH
Confidence               12 3678887766544310 0      0011110            0122222211000  0       11357777


Q ss_pred             HHhhh--hCCcEEEEcC--CCCCCC--CC---hHHHHHHHHHhCCEEEEehhhhcccccccc-CC-CCCC-cccEEEeCC
Q 013217          163 KTAIL--FRPKLIIAGA--SAYPRD--FD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VA-DPFK-YCDVVTTTT  230 (447)
Q Consensus       163 ~~~~~--~~~klii~~~--~~~~~~--~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~-~~~~-~~Di~~~s~  230 (447)
                      +.+..  .++.+|++.+  ...++.  .+   ++++.++|++||+++|+|+++ .|+--.+. +. .-++ ..|+++++ 
T Consensus       213 ~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~-TG~GRtG~~fa~~~~gv~PDivt~g-  290 (453)
T PRK06943        213 RLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIA-VGCGRTGTFFACEQAGVWPDFLCLS-  290 (453)
T ss_pred             HHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechh-hCCCCCcchhHHHhCCCCCCeEeee-
Confidence            77753  2456777764  122331  12   589999999999999999997 44322221 10 0011 36999986 


Q ss_pred             CcccCCC--CCceEEeecCCcchhhHHHHhhhc-----cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHH
Q 013217          231 HKSLRGP--RGGMIFFKKDPVLGVELESAINNA-----VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRA  303 (447)
Q Consensus       231 ~K~l~Gp--~gG~i~~~~~~~~~~~~~~~i~~~-----~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~  303 (447)
                       |.++|.  +.|.+++++      ++.+.+...     ...+.+-+.|...+++..+.++.+.+++   ..++..+..++
T Consensus       291 -Kgl~gG~~Pi~av~~~~------ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~---l~~~~~~~G~~  360 (453)
T PRK06943        291 -KGISGGYLPLSLVLSRD------AIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAEDD---VLARNARKSAR  360 (453)
T ss_pred             -hhhccCcccceEEEEcH------HHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHH
Confidence             998643  457777877      676665421     1111111224555555556677766544   35566666777


Q ss_pred             HHHHHHHC-CcEeeeC--CCCCeeEEecCCC-CCCC---HHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCcccc
Q 013217          304 LASRLVEL-GYKLVSG--GSDNHLVLVDLRP-MGID---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTT  376 (447)
Q Consensus       304 l~~~L~~~-g~~~~~~--~~~~~~~~v~~~~-~~~~---~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~  376 (447)
                      |.+.|++. ....+..  +.. .+.-+.+.. ....   ...+.+.+.++||.+...          ...+|+.++...|
T Consensus       361 l~~~L~~l~~~~~v~~vrG~G-l~~gvel~~~~~~~~~~~~~i~~~~~~~Gll~~~~----------g~~l~~~Ppl~it  429 (453)
T PRK06943        361 LRAALAPLAAHPQVRHLRQRG-TIFAFDVALDGDAARTFSRRFFEAALERELLLRPI----------GTTVYLMPPYVLD  429 (453)
T ss_pred             HHHHHHHHhcCCCEEeEeccc-cEEEEEEccCCCcchHHHHHHHHHHHHCCcEEEec----------CCEEEEeCCCcCC
Confidence            77777652 1111111  111 122334431 1111   245667778899998431          1369999887777


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Q 013217          377 RGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       377 ~g~~~~di~~l~~~i~~~l~~~  398 (447)
                          ++|++++++++.+++...
T Consensus       430 ----~~eid~~~~~l~~al~~~  447 (453)
T PRK06943        430 ----DDEIAWLAERTRATLDAT  447 (453)
T ss_pred             ----HHHHHHHHHHHHHHHHHH
Confidence                999999999999999753

>PRK07678 aminotransferase; Validated

Probab=99.37  E-value=1.7e-09  Score=108.70  Aligned_cols=217  Identities=17%  Similarity=0.119  Sum_probs=124.4

Q ss_pred             HHHHHhhh---hCCcEEEEcCC-CCCC-CCC----hHHHHHHHHHhCCEEEEehhhh-ccccccccCC-CCCC-cccEEE
Q 013217          160 MLEKTAIL---FRPKLIIAGAS-AYPR-DFD----YPRMRQIADAVGALLMMDMAHI-SGLVAASVVA-DPFK-YCDVVT  227 (447)
Q Consensus       160 ~l~~~~~~---~~~klii~~~~-~~~~-~~~----~~~i~~ia~~~g~~livD~a~~-~g~~~~~~~~-~~~~-~~Di~~  227 (447)
                      .++++++.   .++.+||+.+- ...+ ..+    +++++++|++||+++|+|+++. .|-... ... .-++ ..|+++
T Consensus       201 ~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~-~~~~~~~gv~PDivt  279 (451)
T PRK07678        201 EIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGK-AFGFMNYGVKPDIIT  279 (451)
T ss_pred             HHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCch-hHHHHhcCCCCCEEE
Confidence            35555641   24567777632 1223 222    6899999999999999999972 332221 100 0011 369998


Q ss_pred             eCCCcccCCC--CCceEEeecCCcchhhHHHHhhhcc------CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHH
Q 013217          228 TTTHKSLRGP--RGGMIFFKKDPVLGVELESAINNAV------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVS  299 (447)
Q Consensus       228 ~s~~K~l~Gp--~gG~i~~~~~~~~~~~~~~~i~~~~------~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~  299 (447)
                      ++  |.|+|.  +.|.+++++      ++.+.+....      ..++++ .+...+++..++++.+.+++   +.+++.+
T Consensus       280 ~g--K~lggG~~Pi~av~~~~------~i~~~~~~~~~~~~~~h~~T~~-gnp~~~aaa~a~l~~l~~~~---~~~~~~~  347 (451)
T PRK07678        280 MA--KGITSAYLPLSATAVKK------EIYEAFKGKGEYEHFRHVNTFG-GNPAACALALKNLEIMENEN---LIERSAQ  347 (451)
T ss_pred             ee--cccccCCcceeEEEEcH------HHHHHHhccCcccccccCCCCC-cCHHHHHHHHHHHHHHHhCC---HHHHHHH
Confidence            75  998653  457777877      6766664311      112222 24455555555777766544   3566666


Q ss_pred             HHHHHHHHHHHC--CcEeee--CCCCCeeEEecCCCCC-----CC---HHHHHHHHhhcCeEEccCCCCCCCCCCCCCeE
Q 013217          300 NCRALASRLVEL--GYKLVS--GGSDNHLVLVDLRPMG-----ID---GARVEKILDMASITLNKNSVPGDKSALVPGGI  367 (447)
Q Consensus       300 ~~~~l~~~L~~~--g~~~~~--~~~~~~~~~v~~~~~~-----~~---~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~i  367 (447)
                      ..++|.+.|++.  ...++.  .+. ..+.-+.+....     .+   ...+...|.++||.+... -|  ..+.....|
T Consensus       348 ~g~~l~~~l~~~~~~~~~v~~vrg~-Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~~Gv~~~~~-g~--~v~~~~~~l  423 (451)
T PRK07678        348 LGELLLEQLKEELGEHPLVGDIRGK-GLLVGIELVNDKETKEPADNDKVASVVAACKEKGLIIGKN-GD--TVAGYNNVL  423 (451)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEee-ceEEEEEEecCCcccCcCchHHHHHHHHHHHHCCcEEeec-Cc--cccCCCCEE
Confidence            777777777541  111111  111 112223332100     01   245667788899998532 01  001113579


Q ss_pred             EEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          368 RIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       368 Rig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      |++++..+|    ++|++++++++.+++..
T Consensus       424 rl~Ppl~it----~~eid~~~~~l~~~l~~  449 (451)
T PRK07678        424 TLSPPLVIS----SEEIAFIVGTLKTALER  449 (451)
T ss_pred             EEECCCcCC----HHHHHHHHHHHHHHHHh
Confidence            999988777    99999999999998864

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=99.37  E-value=5.1e-10  Score=105.94  Aligned_cols=278  Identities=18%  Similarity=0.136  Sum_probs=168.5

Q ss_pred             HHHHHHHcCCCCCccceeeecCCc-HHHHHHHHHHh-c--CCCCEEEEecCCCCcccCCCccccccccccccceeEEEec
Q 013217           72 QKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTAI-L--KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY  147 (447)
Q Consensus        72 ~~~~~~~~g~~~~~~~~~v~~~sG-s~a~~~~~~al-~--~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  147 (447)
                      +..+++++|++-    +|-....+ |.+-.+++++. .  ++..++++..-.|+.++...      .....+.+++++.+
T Consensus       126 Qtlv~dLTGm~V----ANASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl------~Tra~~~g~~i~~~  195 (450)
T COG0403         126 QTLVADLTGLDV----ANASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVL------RTRAEGLGIEIEVV  195 (450)
T ss_pred             HHHHHHHhCCCc----ccchhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHH------HhhcccCceEEEEe
Confidence            467889999984    23322333 45556565555 2  33689999888887765422      11233444565554


Q ss_pred             ccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-ccc
Q 013217          148 RLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCD  224 (447)
Q Consensus       148 ~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-~~D  224 (447)
                      +.+      |.+++++. ++..+..|++..|++.+  ..|+.+|.+.+|++|+++++=.    ..+..++...|-. ++|
T Consensus       196 ~~~------d~~~l~~~-~~~~~~gv~vQyP~~~G~~~~d~~~l~~~~h~~~al~~v~a----DplaL~LL~pPGe~GAD  264 (450)
T COG0403         196 DAD------DLDDLESA-DDGDVFGVLVQYPNTFGIVEEDLRALIEAAHSAGALVIVAA----DPLALGLLKPPGEFGAD  264 (450)
T ss_pred             ccc------hhhhhhhc-cccCeEEEEEecCCCCCccchhHHHHHHHHhhcCCEEEEEe----chhHhhccCCccccCCc
Confidence            332      77888877 44367888998887665  4579999999999999887532    2223333444544 799


Q ss_pred             EEEeCCCc-----ccCCCCCceEEeecCCcchhhHHHH----------------------------hhhccCCCCCCCCc
Q 013217          225 VVTTTTHK-----SLRGPRGGMIFFKKDPVLGVELESA----------------------------INNAVFPGLQGGPH  271 (447)
Q Consensus       225 i~~~s~~K-----~l~Gp~gG~i~~~~~~~~~~~~~~~----------------------------i~~~~~~~~~g~p~  271 (447)
                      |++++++-     +|+||..|++.++++      +..+                            |++.......+  .
T Consensus       265 IvvG~~QrfGvPmgfGGPhag~fA~~~~------~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNIC--T  336 (450)
T COG0403         265 IVVGSAQRFGVPMGFGGPHAGYFAVKDE------FKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNIC--T  336 (450)
T ss_pred             eEEecCcccCCCcCCCCcceeeeeEhHh------HhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhh--H
Confidence            99999986     357888899999984      3222                            11111000011  1


Q ss_pred             HHHHHHHHHHH--HHhcChhHHHHHHHHHHHHHHHHHHHHH--CCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcC
Q 013217          272 NHTIGGLAVCL--KHAQSPEFKVYQNKVVSNCRALASRLVE--LGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAS  347 (447)
Q Consensus       272 ~~~~aal~~al--~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~g  347 (447)
                      ...+.|+++++  -.+...|.++..+++.+.+.+++++|++  .|++++..   .++-.+.++-.......+.......|
T Consensus       337 nQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~---~fFdt~~v~~~~~~~~~l~~~~~~~G  413 (450)
T COG0403         337 NQALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFD---HFFDTFTVRVPEEVAEALLAAAIAGG  413 (450)
T ss_pred             HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEeccc---cceeeEEEecchhHHHHHHHHHHhcC
Confidence            12233333322  2334567899999999999999999996  45877643   23222223211111223334444567


Q ss_pred             eEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          348 ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       348 I~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                      |.++..         ....+=++....++    ++|++.+++++...
T Consensus       414 ~~L~~~---------~~~~~~ia~tEt~t----~~~i~~l~~~~~~~  447 (450)
T COG0403         414 INLRRV---------DADTVLIALTETTT----KEDIDALVAAFGGV  447 (450)
T ss_pred             Cceeee---------cCCceEEEeecccC----HHHHHHHHHHHhhh
Confidence            766531         12356667677777    99999999887653

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=99.37  E-value=3.1e-09  Score=106.98  Aligned_cols=314  Identities=16%  Similarity=0.097  Sum_probs=165.1

Q ss_pred             CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh--cCCC
Q 013217           33 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKPH  110 (447)
Q Consensus        33 ~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al--~~pg  110 (447)
                      .|.|.+++.+.+.+....+.       .+    ..+....+++.+.+.. .+ .  ...++||++|+..++...  ....
T Consensus       117 ~p~v~~av~~ql~~~~~~~~-------~~----~~~~~lAe~l~~~~p~-~~-~--v~f~~SGsEA~e~AlklAR~~tgr  181 (474)
T PLN02482        117 DDEVLAALAETMKKGTSFGA-------PC----LLENVLAEMVIDAVPS-VE-M--VRFVNSGTEACMGVLRLARAYTGR  181 (474)
T ss_pred             CHHHHHHHHHHHhhCCCCCC-------CC----HHHHHHHHHHHHhCCC-CC-E--EEEeCChHHHHHHHHHHHHHhcCC
Confidence            68899998887765221111       11    1222223566666532 12 1  233589999999887643  2234


Q ss_pred             CEEEEecCCCCcccC-CCccccc--ccc--c-cccce----eEEEecccCCCCCCCCHHHHHHHhhhh--CCcEEEEcCC
Q 013217          111 DRIMGLDLPHGGHLS-HGFMTPK--RRV--S-GTSIY----FESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGAS  178 (447)
Q Consensus       111 d~Vl~~~~~~~~~~~-~~~~~~~--~~~--~-~~g~~----~~~~~~~~~~~~~~id~~~l~~~~~~~--~~klii~~~~  178 (447)
                      ++|+...-.|.|+.. .+.....  ...  . ..+..    ...+.++      .-|++++++.+..+  ++.+||+.+.
T Consensus       182 ~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~nd~~~l~~~l~~~~~~iAavI~Epv  255 (474)
T PLN02482        182 EKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAP------YNDLEAVKKLFEANKGEIAAVILEPV  255 (474)
T ss_pred             CEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEec------CCChHHHHHHHHhCCCceEEEEECCC
Confidence            678877655444310 0000000  000  0 00000    0011111      12789999888642  3456666522


Q ss_pred             -CCCC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccCC-CCCceEEeecCC
Q 013217          179 -AYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRG-PRGGMIFFKKDP  248 (447)
Q Consensus       179 -~~~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~G-p~gG~i~~~~~~  248 (447)
                       .+.+ ..+    ++++.++|++||+++|+|++| .|+ ..+.. . .-++ ..|++++  .|.++| .+.|.+.+++  
T Consensus       256 ~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~-tGf-R~g~~ga~~~~gv~PDi~t~--gK~lggG~Pigav~g~~--  329 (474)
T PLN02482        256 VGNSGFIVPKKEFLEGLREITKENGALLVFDEVM-TGF-RIAYGGAQEYFGITPDLTTL--GKVIGGGLPVGAYGGRR--  329 (474)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc-cCe-ecCcchHhHHhCCCCCEEEe--cchhhCCCceEEEEEcH--
Confidence             2223 222    578999999999999999998 565 22210 0 0011 2588766  599864 3346667777  


Q ss_pred             cchhhHHHHhhhccCCCCCCC--CcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH----CCcEeeeCCCCC
Q 013217          249 VLGVELESAINNAVFPGLQGG--PHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----LGYKLVSGGSDN  322 (447)
Q Consensus       249 ~~~~~~~~~i~~~~~~~~~g~--p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~~~  322 (447)
                          ++.+.+.........+|  .+...+++..++++.+.+++   ..+++.+..++|.+.|.+    .|+.+....-..
T Consensus       330 ----ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~~~---~~~~~~~~g~~l~~~L~~l~~~~g~~~~~~~v~g  402 (474)
T PLN02482        330 ----EIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQPG---TYEYLDKITKKLIQGILEAGKKAGHEMCGGYISG  402 (474)
T ss_pred             ----HHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHHHHHHHhcCCCEEEcccce
Confidence                67776643110011122  34445555555777775543   466777777888887766    334443211112


Q ss_pred             eeEEecCCCC---------CCC---HHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHH
Q 013217          323 HLVLVDLRPM---------GID---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADF  390 (447)
Q Consensus       323 ~~~~v~~~~~---------~~~---~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~  390 (447)
                       ++-+.+...         .-+   ...+.+.|.++||.+.....+        .  +. ++..+|    ++|++++.++
T Consensus       403 -~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~Gv~~~~~~~~--------~--~~-psl~ht----~~dId~~l~a  466 (474)
T PLN02482        403 -MFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLEEGVYLAPSQFE--------A--GF-TSLAHT----EEDIDFTIAA  466 (474)
T ss_pred             -EEEEEEecCCccChhhhccCCHHHHHHHHHHHHHCCeEEeccCCC--------C--Cc-CCCCCC----HHHHHHHHHH
Confidence             221211110         001   134666777899998542111        0  11 333444    9999999999


Q ss_pred             HHHHHH
Q 013217          391 IHEGVE  396 (447)
Q Consensus       391 i~~~l~  396 (447)
                      +++++.
T Consensus       467 l~~~l~  472 (474)
T PLN02482        467 AERVLA  472 (474)
T ss_pred             HHHHHH
Confidence            998875

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=99.35  E-value=3.6e-09  Score=106.54  Aligned_cols=321  Identities=17%  Similarity=0.130  Sum_probs=171.1

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh--cCC
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP  109 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al--~~p  109 (447)
                      -.|.|.+++.+.+.. +.  +...++.  ++...+    ..++++++++...+.   ...++||++|+.+++.-.  ...
T Consensus        88 ~~p~v~~Ai~~ql~~-~~--~~~~~~~--~~~~~~----lae~L~~~~p~~~~~---v~f~~sGseAve~AlklAr~~tg  155 (459)
T PRK06082         88 GHPHVIEKVKEQMAK-LP--FSPRRFT--NETAIE----CAEKLTEIAGGELNR---VLFAPGGTSAIGMALKLARHITG  155 (459)
T ss_pred             CCHHHHHHHHHHHHh-CC--CccCccC--CHHHHH----HHHHHHHhCCCCCCE---EEECCCcHHHHHHHHHHHHHhcC
Confidence            368899888877754 22  1111211  222222    235677777532221   244689999999877643  223


Q ss_pred             CCEEEEecCCCCcccCCCccccccccccccc------------eeEEEecccCCC-CC-CC------CHHHHHHHhhhh-
Q 013217          110 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRLDES-TG-LV------DYDMLEKTAILF-  168 (447)
Q Consensus       110 gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~------------~~~~~~~~~~~~-~~-~i------d~~~l~~~~~~~-  168 (447)
                      ..+|+...-.|.|.-. +      .+.+.+.            .+..++.+.... .+ ..      ++++++++++.. 
T Consensus       156 r~~ii~~~~~yHG~t~-~------a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  228 (459)
T PRK06082        156 NFKVVSLWDSFHGASL-D------AISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEKEG  228 (459)
T ss_pred             CCEEEEEeCCCcCccH-H------HHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhcCC
Confidence            4678877655433210 0      0111110            011122111000 00 01      135577777532 


Q ss_pred             CCcEEEEcCCCC-CC-CCC---hHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccCCC--C
Q 013217          169 RPKLIIAGASAY-PR-DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRGP--R  238 (447)
Q Consensus       169 ~~klii~~~~~~-~~-~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~Gp--~  238 (447)
                      ++.+||+.+... +. ..+   +++++++|++||+++|+|++|. |+--.|.. . .-++ ..|++++  .|.++|.  +
T Consensus       229 ~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~t-G~GRtG~~fa~e~~gv~PDiv~~--gKgl~gG~~P  305 (459)
T PRK06082        229 GIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPN-GMGRTGEWFTHQAYGIEPDILCI--GKGLGGGLVP  305 (459)
T ss_pred             CEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-CCCccchhhHhHhhCCCCCEEEe--cccccCCCCc
Confidence            455666653211 12 234   7999999999999999999984 54222211 1 0011 3688885  5999653  4


Q ss_pred             CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC--CcEee
Q 013217          239 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLV  316 (447)
Q Consensus       239 gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~  316 (447)
                      .|.+++++      ++..........++.+ .+...+++..+.++.+.+++   ..++..+..++|.+.|++.  ...++
T Consensus       306 ~~av~~~~------~i~~~~~~~~~~~T~~-gnpl~~aaa~a~L~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~i  375 (459)
T PRK06082        306 IAAMITKD------KYNTAAQISLGHYTHE-KSPLGCAAALATIEVIEQEG---LLEKVKADSQFMRERLLEMKAKYPLI  375 (459)
T ss_pred             ceEEEEcH------HHHhhccCCCCCCCCC-cCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence            56777776      5544332211112222 34444555555677665443   4667777777888777652  12222


Q ss_pred             eC--CCCCeeEEecCCCC----CCC---HHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHH
Q 013217          317 SG--GSDNHLVLVDLRPM----GID---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAI  387 (447)
Q Consensus       317 ~~--~~~~~~~~v~~~~~----~~~---~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l  387 (447)
                      ..  +.. .+.-+.+...    .-+   ...+...+.++||.+...         ....+|+.++...+    ++|++++
T Consensus       376 ~~vrG~G-l~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~---------~~~~i~~~Ppl~it----~~eid~~  441 (459)
T PRK06082        376 GDVRGIG-LLWGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFKVS---------QGNVIQLSPPLIIT----REELTQA  441 (459)
T ss_pred             eeeeecc-ceeEEEEccCccccCccHHHHHHHHHHHHhCCCEEEec---------CCCEEEEeCCCccC----HHHHHHH
Confidence            21  111 1222333211    001   234556677899988431         13479999887666    9999999


Q ss_pred             HHHHHHHHHHH
Q 013217          388 ADFIHEGVEIT  398 (447)
Q Consensus       388 ~~~i~~~l~~~  398 (447)
                      .+++.+++...
T Consensus       442 ~~~l~~~l~~~  452 (459)
T PRK06082        442 LAILEEAIAKI  452 (459)
T ss_pred             HHHHHHHHHHH
Confidence            99999998754

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.34  E-value=2.9e-09  Score=106.98  Aligned_cols=204  Identities=14%  Similarity=0.095  Sum_probs=119.4

Q ss_pred             CCcEEEEcC-CCCCCC--C---ChHHHHHHHHHhCCEEEEehhhhccccccccC-CC-CCC-cccEEEeCCCcccC-CCC
Q 013217          169 RPKLIIAGA-SAYPRD--F---DYPRMRQIADAVGALLMMDMAHISGLVAASVV-AD-PFK-YCDVVTTTTHKSLR-GPR  238 (447)
Q Consensus       169 ~~klii~~~-~~~~~~--~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~~-~~~-~~Di~~~s~~K~l~-Gp~  238 (447)
                      ++..|++.+ .++++.  .   -+++++++|++||+++|+|+++ .|+...+.. .. -++ ..|++++  .|.++ |.+
T Consensus       206 ~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~-tGfGRtG~~~a~~~~gv~PDiv~~--gK~l~~G~P  282 (442)
T TIGR00709       206 KPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQ-AGFGRSGTMFAFEHAGIEPDFVVM--SKAVGGGLP  282 (442)
T ss_pred             ceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccc-cCCCCCCchhHHHHcCCCCcEEEE--cccccCCcc
Confidence            456677763 233332  2   2689999999999999999997 454333321 10 011 2588885  59985 555


Q ss_pred             CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC--CcEee
Q 013217          239 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLV  316 (447)
Q Consensus       239 gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~  316 (447)
                      .|++++++      ++ +.+......++. +.+...+++..++++.+.++++   .++..+..++|.+.|++.  ...++
T Consensus       283 igav~~~~------~~-~~~~~~~~~~T~-~gnpla~aaa~a~L~~i~~~~l---~~~~~~~g~~l~~~L~~l~~~~~~v  351 (442)
T TIGR00709       283 LAVLLIAP------EF-DAWQPAGHTGTF-RGNQLAMVTGTEALNYWKDDNL---AQNAQERGERITSFLDDMIKEHPCI  351 (442)
T ss_pred             cEEEEEch------HH-hccCCCcCCCCC-CcCHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            68888876      53 333222222222 3355555555567776655444   556666677777777651  22222


Q ss_pred             eC--CCCCeeEEecCCCCC--------C-----CHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCH
Q 013217          317 SG--GSDNHLVLVDLRPMG--------I-----DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSE  381 (447)
Q Consensus       317 ~~--~~~~~~~~v~~~~~~--------~-----~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~  381 (447)
                      ..  +. .-+.-+.+....        .     ....+...|.++||.+...   +    .....||+.++...|    +
T Consensus       352 ~~vrG~-Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~---~----~~~~~l~~~Ppl~it----~  419 (442)
T TIGR00709       352 GNVRGR-GLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETG---G----REGEVFRLLCPITID----Q  419 (442)
T ss_pred             eeeecc-ceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeEEeec---C----CCCCEEEEECCCCCC----H
Confidence            21  11 112223332110        0     1234666777899998531   0    113579998887777    9


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 013217          382 KEFVAIADFIHEGVEIT  398 (447)
Q Consensus       382 ~di~~l~~~i~~~l~~~  398 (447)
                      +|++++.+++.+++...
T Consensus       420 ~ei~~~~~~l~~~l~~~  436 (442)
T TIGR00709       420 EECEEGISRFKQAVEEA  436 (442)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999998753

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK05965 hypothetical protein; Provisional

Probab=99.34  E-value=3.9e-09  Score=106.36  Aligned_cols=331  Identities=15%  Similarity=0.069  Sum_probs=172.4

Q ss_pred             CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc-----
Q 013217           33 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL-----  107 (447)
Q Consensus        33 ~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~-----  107 (447)
                      .|.|.+++.+.+.+- .  +....+....+    ......+++.+++..+.+.   ....+||++|+.+++....     
T Consensus        64 ~p~i~~Ai~~q~~~~-~--~~~~~~~~~~~----~~~~lae~L~~~~p~~~~~---v~f~~sGSEAve~AlKlAr~~~~~  133 (459)
T PRK05965         64 QESIVEAAAEQMREL-P--YATGYFHFGSE----PAIRLAAKLAERAPGSLNH---VYFTLGGSDAVDSAVRFIRHYWNA  133 (459)
T ss_pred             CHHHHHHHHHHHHhc-C--CcccccccCCH----HHHHHHHHHHhhCCCCcCE---EEEeCChhHHHHHHHHHHHHHHHh
Confidence            688999988877642 1  11100000111    1112234666665322221   2335889999998876432     


Q ss_pred             -C-C-CCEEEEecCCCCcccC----C-CccccccccccccceeEEEecccCC-CCCCCC--------HHHHHHHhhh---
Q 013217          108 -K-P-HDRIMGLDLPHGGHLS----H-GFMTPKRRVSGTSIYFESMPYRLDE-STGLVD--------YDMLEKTAIL---  167 (447)
Q Consensus       108 -~-p-gd~Vl~~~~~~~~~~~----~-~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id--------~~~l~~~~~~---  167 (447)
                       . + ..+|+...-.|.|.-.    . +...........-.....++++... ....-|        ++++++.+..   
T Consensus       134 ~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  213 (459)
T PRK05965        134 TGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAELGA  213 (459)
T ss_pred             cCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhcCC
Confidence             1 2 3578888766544310    0 0000000000000001122222100 001123        3567777753   


Q ss_pred             hCCcEEEEcCC-CCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccCCC-
Q 013217          168 FRPKLIIAGAS-AYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRGP-  237 (447)
Q Consensus       168 ~~~klii~~~~-~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~Gp-  237 (447)
                      .+..+||+.+- ...+  ..+   +++++++|++||+++|+|+++ .|+--.+.. . .-.+ ..|+++++  |.|+|. 
T Consensus       214 ~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~-tGfGRtG~~~a~~~~gv~PDiv~~g--Kgl~gG~  290 (459)
T PRK05965        214 DNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVI-TGFGRTGPLFACEAEGVVPDLMTVA--KGLTSGY  290 (459)
T ss_pred             CceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechh-ccCccCchhhhHhhcCCCCCeEEec--hhhccCC
Confidence            24567777632 1222  112   589999999999999999997 443222210 0 0011 26999987  998654 


Q ss_pred             -CCceEEeecCCcchhhHHHHhhhc------cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH
Q 013217          238 -RGGMIFFKKDPVLGVELESAINNA------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE  310 (447)
Q Consensus       238 -~gG~i~~~~~~~~~~~~~~~i~~~------~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~  310 (447)
                       +-|.+++++      ++.+.+...      ...+.+-+.|...+++..+.++.+.+++   +.++..+..++|.+.|++
T Consensus       291 ~Pi~av~~~~------~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~---l~~~~~~~g~~l~~~l~~  361 (459)
T PRK05965        291 VPMGAVLMSD------HVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGG---LLANGQKAGPRFAAGLDA  361 (459)
T ss_pred             cceeEEEEcH------HHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHh
Confidence             457777777      676665421      1111111234455555555677765544   356666777777777766


Q ss_pred             C-CcEeeeCCCC-CeeEEecCCCC-----C--C---CHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCC
Q 013217          311 L-GYKLVSGGSD-NHLVLVDLRPM-----G--I---DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRG  378 (447)
Q Consensus       311 ~-g~~~~~~~~~-~~~~~v~~~~~-----~--~---~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g  378 (447)
                      . ...++..-.. ..+.-+.+...     .  .   -...+.+.+.++||.+...         ....||+.++...+  
T Consensus       362 l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gll~~~~---------g~~~i~~~PpL~it--  430 (459)
T PRK05965        362 LRAHPLVGDVRGRGLLGALELVADKATKTPFDAALDPADRIFDRAYANGLVFRAF---------GDGVLGFAPALCCT--  430 (459)
T ss_pred             hccCCCEEEEeecceEEEEEEeccccccCCCCchhHHHHHHHHHHHhCCeEEEec---------CCcEEEEECCCcCC--
Confidence            2 1222221011 11222333210     0  0   1234666778899998531         12469998887777  


Q ss_pred             CCHHHHHHHHHHHHHHHHHH
Q 013217          379 FSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       379 ~~~~di~~l~~~i~~~l~~~  398 (447)
                        ++|++++.+.+.+++...
T Consensus       431 --~~ei~~~~~~l~~~l~~~  448 (459)
T PRK05965        431 --EGEFDLIFERTRKTLDDV  448 (459)
T ss_pred             --HHHHHHHHHHHHHHHHHH
Confidence              999999999999999753

>PRK07480 putative aminotransferase; Validated

Probab=99.33  E-value=4.8e-09  Score=105.49  Aligned_cols=212  Identities=16%  Similarity=0.139  Sum_probs=120.8

Q ss_pred             HHHHHHhhh---hCCcEEEEcCC-CCCC-CCC----hHHHHHHHHHhCCEEEEehhhhcccccccc-CCC-CCC-cccEE
Q 013217          159 DMLEKTAIL---FRPKLIIAGAS-AYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASV-VAD-PFK-YCDVV  226 (447)
Q Consensus       159 ~~l~~~~~~---~~~klii~~~~-~~~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~~-~~~-~~Di~  226 (447)
                      +++++.+..   .++.+||+.+. ...+ ..+    +++++++|++||+++|+|+++ .|+--.+. ... -.+ ..|++
T Consensus       206 ~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~-tGfGRtG~~~a~~~~gv~PDiv  284 (456)
T PRK07480        206 RQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVI-CGFGRTGEWFGSQHFGIKPDLM  284 (456)
T ss_pred             HHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechh-hCCCcCcchhhhhhcCCCCCee
Confidence            566555532   24557777632 2223 222    789999999999999999998 34322221 000 011 25888


Q ss_pred             EeCCCcccCCC--CCceEEeecCCcchhhHHHHhh--hc-c-CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHH-HH
Q 013217          227 TTTTHKSLRGP--RGGMIFFKKDPVLGVELESAIN--NA-V-FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKV-VS  299 (447)
Q Consensus       227 ~~s~~K~l~Gp--~gG~i~~~~~~~~~~~~~~~i~--~~-~-~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~-~~  299 (447)
                      +++  |.++|.  +.|.+++++      ++.+.+.  .. . ..++++ .++..+++..++|+.+.++++   .++. .+
T Consensus       285 ~~g--K~l~gG~~Pi~av~~~~------~i~~~~~~~~~~~~~~~T~~-gnpl~~Aaa~a~L~~l~~~~l---~~~~~~~  352 (456)
T PRK07480        285 TIA--KGLTSGYIPMGAVGVGD------RVAEVLIEEGGEFNHGFTYS-GHPVAAAVALANLRILRDEGI---VERVRDD  352 (456)
T ss_pred             eee--hhhccCCccceEEEEcH------HHHHHHhcCCCCcccCCCCC-cCHHHHHHHHHHHHHHHhCCH---HHHHHHH
Confidence            775  998653  356666666      6766652  11 1 122222 345556666667777765443   4455 35


Q ss_pred             HHHHHHHHHHHC-CcEeeeC--CCCCeeEEecCCCC-C----C-C----HHHHHHHHhhcCeEEccCCCCCCCCCCCCCe
Q 013217          300 NCRALASRLVEL-GYKLVSG--GSDNHLVLVDLRPM-G----I-D----GARVEKILDMASITLNKNSVPGDKSALVPGG  366 (447)
Q Consensus       300 ~~~~l~~~L~~~-g~~~~~~--~~~~~~~~v~~~~~-~----~-~----~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~  366 (447)
                      ..++|.+.|++. ...++..  +.. .+.-+.+... .    . +    ...+...|.++||.+...          ...
T Consensus       353 ~g~~l~~~l~~l~~~~~i~~vrG~G-lm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~----------~~~  421 (456)
T PRK07480        353 TGPYLQKRLRELADHPLVGEVRGVG-LVGAIELVKDKATRERFEAGGGVGTICRDHCFANGLIMRAV----------GDR  421 (456)
T ss_pred             HHHHHHHHHHHhhcCCCeeeEEeec-ceEEEEEeccccccccCcchhhHHHHHHHHHHHCCcEEeec----------CCE
Confidence            566666666551 1111111  111 1222233111 0    0 1    234666777899998421          247


Q ss_pred             EEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          367 IRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       367 iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      +|+.++...+    ++|++++.+++.+++...
T Consensus       422 l~~~Ppl~it----~~eid~~~~~l~~al~~~  449 (456)
T PRK07480        422 MIISPPLVIT----HAEIDELVEKARKALDAT  449 (456)
T ss_pred             EEEECCCCCC----HHHHHHHHHHHHHHHHHH
Confidence            9998776666    999999999999999754

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=1.2e-10  Score=108.39  Aligned_cols=335  Identities=17%  Similarity=0.173  Sum_probs=191.7

Q ss_pred             cCeeEecCCCCC----CHHHHHHHhhhhhccCCCCCCCCc-ccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCc
Q 013217           21 KSLELIASENFT----SRAVMEAVGSCLTNKYSEGLPGKR-YYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG   95 (447)
Q Consensus        21 ~~i~l~~~~n~~----~~~v~~a~~~~~~~~~~~g~~~~~-~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sG   95 (447)
                      +.+|+ +|.||.    .+.+.+.....+. +|+-|..|=| +||-....-.+|    +++++++|++..     +..+-|
T Consensus        95 ~~~N~-aS~NfL~l~~~~~ike~a~~~lr-kyGvGsCGPrGFYGt~DvHldlE----~~iakF~G~E~a-----ivYs~g  163 (467)
T KOG1358|consen   95 DVLNF-ASANFLGLIENEEIKEEASFTLR-KYGVGSCGPRGFYGTIDVHLDLE----KRIAKFMGTEDA-----IVYSYG  163 (467)
T ss_pred             eeecc-cchhhhhhcccHHHHHHHHHHHH-HhCCCCcCCCcccccceeecccH----HHHHHhhCCcce-----eeeccc
Confidence            44554 788876    5777777666554 5766666544 455444444566    689999999862     445777


Q ss_pred             HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh------C
Q 013217           96 SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF------R  169 (447)
Q Consensus        96 s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~------~  169 (447)
                      .+++..++.++.+.||.|.+..-.+.+.        .+.+.++.-  .+..+.      ..|.++++.+..+.      +
T Consensus       164 F~ti~S~ipafsKrGDIi~~de~~nfaI--------q~GlqlSRS--~i~~Fk------hndm~~lerll~E~~~~~~K~  227 (467)
T KOG1358|consen  164 FSTIESAIPAFSKRGDIIFVDEAVNFAI--------QKGLQLSRS--TISYFK------HNDMEDLERLLPEQEDEDQKN  227 (467)
T ss_pred             cchhhhcchhhhccCcEEEEehhhhHHH--------HHHHhhhhh--eeEEec------CCCHHHHHHhccCcchhhhhc
Confidence            7888889999999999998876332211        112222211  122222      35777777665331      1


Q ss_pred             C-----c-EEEEc--CCCCCCCCChHHHHHHHHHhCCEEEEehhhhcccccc---cc--C-CCCCCcccEEEeCCCcccC
Q 013217          170 P-----K-LIIAG--ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA---SV--V-ADPFKYCDVVTTTTHKSLR  235 (447)
Q Consensus       170 ~-----k-lii~~--~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~---~~--~-~~~~~~~Di~~~s~~K~l~  235 (447)
                      |     + .|++.  ..|++...|+.+|.++..+|...++.|++.++|....   |+  + ..+....|++++|..-.++
T Consensus       228 ~k~~~~Rrfiv~EGl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~ala  307 (467)
T KOG1358|consen  228 PKKALTRRFIVVEGLYANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALA  307 (467)
T ss_pred             cccccceEEEEEEeeccCCCcccccHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeeccccccc
Confidence            2     2 33443  4566668999999999999999999999998887654   22  1 1233468999999877764


Q ss_pred             CCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcE
Q 013217          236 GPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYK  314 (447)
Q Consensus       236 Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~  314 (447)
                       ..||+..++.-.    -..+++....+-...+.|....-+|. .++..+.+  -.+..+.+++....+-+.|+. .++.
T Consensus       308 -s~GgFc~G~~~i----~~hQrLSg~~Y~fSAslPp~la~aa~-~ai~i~~~--~p~~~~~L~~k~~~~H~~l~~~s~~~  379 (467)
T KOG1358|consen  308 -SGGGFCAGKSFI----ADHQRLSGSGYCFSASLPPYLAGAAI-KAILIEEW--NPEIVQPLRAKVAKFHAALSSNSGFI  379 (467)
T ss_pred             -ccCceeecceee----EeeeeccccceeeeccCchhhhhhHH-HHHHHHhh--CcchhhhhhccccccchhhhcCCceE
Confidence             346777664410    01122322111101122333222222 23333221  123455666666666677766 3566


Q ss_pred             eeeCCCCCeeEEecCCCCCCCHH-------HHHHHHhhcCeEEccC-CCCCCC-CCCCCCeEEEecCccccCCCCHHHHH
Q 013217          315 LVSGGSDNHLVLVDLRPMGIDGA-------RVEKILDMASITLNKN-SVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFV  385 (447)
Q Consensus       315 ~~~~~~~~~~~~v~~~~~~~~~~-------~~~~~L~~~gI~v~~~-~~p~~~-~~~~~~~iRig~~~~~~~g~~~~di~  385 (447)
                      +.+. ..+.+..+.+.....+.+       ++.+.+...|+.+... .+-... .+ .+..|||++.    .+|+++|++
T Consensus       380 v~~~-~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~~~ll~~a~~~~~~e~~~-~~pSiri~~~----a~~seeel~  453 (467)
T KOG1358|consen  380 VSGS-PESPIIHLQLERSYGSREKEEKLLEEIVDKCIAEGVLLTRAKYLEKLERCP-IPPSIRICVS----AGMSEEELE  453 (467)
T ss_pred             EecC-cCCceeeeeecccccchHHHHHHHHHHHHHHHhhcceehhhhhhhhcccCC-CCCcEEEEEe----CCCCHHHHH
Confidence            5543 445555554443222222       2333222237766432 221111 22 2447999765    466699999


Q ss_pred             HHHHHHHHHHH
Q 013217          386 AIADFIHEGVE  396 (447)
Q Consensus       386 ~l~~~i~~~l~  396 (447)
                      ++++.|+++..
T Consensus       454 ra~~~ik~~~~  464 (467)
T KOG1358|consen  454 RAAELIKEVAS  464 (467)
T ss_pred             HHHHHHHHHHH
Confidence            99999988765

>PRK07482 hypothetical protein; Provisional

Probab=99.33  E-value=4.4e-09  Score=106.04  Aligned_cols=217  Identities=15%  Similarity=0.133  Sum_probs=126.3

Q ss_pred             CHHHHHHHhhh---hCCcEEEEcCC-CCCCC--CC---hHHHHHHHHHhCCEEEEehhhhcccccccc-CCC-CCC-ccc
Q 013217          157 DYDMLEKTAIL---FRPKLIIAGAS-AYPRD--FD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VAD-PFK-YCD  224 (447)
Q Consensus       157 d~~~l~~~~~~---~~~klii~~~~-~~~~~--~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~~-~~~-~~D  224 (447)
                      +++++++++..   .++.+||+.+. ...+.  .+   +++|+++|++||+++|+|+++ .|+--.+. ... -++ ..|
T Consensus       205 ~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~-tGfGRtG~~~a~~~~gv~PD  283 (461)
T PRK07482        205 CADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVV-TGFGRLGSMFGSDHYGIEPD  283 (461)
T ss_pred             HHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccc-cCCCcCcchhhHHhcCCCCC
Confidence            46778887742   24567777632 22222  12   589999999999999999997 44321221 000 011 369


Q ss_pred             EEEeCCCcccCCC--CCceEEeecCCcchhhHHHHhhhc------cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHH
Q 013217          225 VVTTTTHKSLRGP--RGGMIFFKKDPVLGVELESAINNA------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK  296 (447)
Q Consensus       225 i~~~s~~K~l~Gp--~gG~i~~~~~~~~~~~~~~~i~~~------~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~  296 (447)
                      +++++  |.|+|.  +.|.+++++      ++.+.+...      ...+.+-+.|...+++..+.++.+.++++   .++
T Consensus       284 iv~~g--Kgl~gG~~Pi~av~~~~------~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~~~l---~~~  352 (461)
T PRK07482        284 LITVA--KGLTSAYAPLSGSIVGE------KVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILERENL---VGN  352 (461)
T ss_pred             EEEEc--cccccCccccceeeecH------HHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHhCCH---HHH
Confidence            99976  999653  446666666      566655421      11111112355556666667777665543   555


Q ss_pred             HHHHHHHHHHHHHHC--CcEeeeC--CCCCeeEEecCCCCC-----CC-----HHHHHHHHhhcCeEEccCCCCCCCCCC
Q 013217          297 VVSNCRALASRLVEL--GYKLVSG--GSDNHLVLVDLRPMG-----ID-----GARVEKILDMASITLNKNSVPGDKSAL  362 (447)
Q Consensus       297 ~~~~~~~l~~~L~~~--g~~~~~~--~~~~~~~~v~~~~~~-----~~-----~~~~~~~L~~~gI~v~~~~~p~~~~~~  362 (447)
                      ..+..++|.+.|++.  ...++..  +. ..+.-+.+....     .+     ...+...|.++||.+..  .|      
T Consensus       353 ~~~~g~~l~~~L~~l~~~~~~v~~vrG~-Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~--~~------  423 (461)
T PRK07482        353 AAEVGAYFRARLRAAFGDHPLVGEVRGV-GMLAAVEFVADRDDRTPFDPALKIGPQVSAAALERGVIARA--MP------  423 (461)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCEEEEeec-eeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHHCCcEEec--CC------
Confidence            666677777777541  1222211  11 112223332110     01     24566777889998842  11      


Q ss_pred             CCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          363 VPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       363 ~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      ....+|+.++...+    ++|++++.+++.+++...
T Consensus       424 ~~~~i~~~Ppl~it----~~ei~~~~~~l~~~l~~~  455 (461)
T PRK07482        424 HGDILGFAPPLVLT----RAEADEIVAIAKDAVDEV  455 (461)
T ss_pred             CCCEEEEeCCCCCC----HHHHHHHHHHHHHHHHHH
Confidence            12479998777776    999999999999998753

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.32  E-value=3.5e-09  Score=106.00  Aligned_cols=306  Identities=14%  Similarity=0.087  Sum_probs=164.7

Q ss_pred             CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh--cCCC
Q 013217           33 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKPH  110 (447)
Q Consensus        33 ~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al--~~pg  110 (447)
                      .|.|.+++.+.+......++       ..+    .+....+++.+.+.. .+.   ....+||++|+.+++...  ....
T Consensus        71 ~p~v~~ai~~q~~~~~~~~~-------~~~----~~~~la~~l~~~~p~-~~~---v~f~~sGseA~e~AlklAr~~tgr  135 (428)
T PRK12389         71 HPHITKAITEAAENGVLYGT-------PTE----LEIEFAKMLKEAIPS-LEK---VRFVNSGTEAVMTTIRVARAYTGR  135 (428)
T ss_pred             CHHHHHHHHHHHHhCCccCC-------CCH----HHHHHHHHHHHhCCC-CcE---EEEeCCHHHHHHHHHHHHHHhhCC
Confidence            68888888877764211111       111    111223456565531 121   233689999999887743  2234


Q ss_pred             CEEEEecCCCCcccCCCccccccccccccce-----------e------EEEecccCCCCCCCCHHHHHHHhhhh--CCc
Q 013217          111 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----------F------ESMPYRLDESTGLVDYDMLEKTAILF--RPK  171 (447)
Q Consensus       111 d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~-----------~------~~~~~~~~~~~~~id~~~l~~~~~~~--~~k  171 (447)
                      .+|+...-.|.|....       .+...+..           +      .+..++      ..|++.+++.+..+  ++.
T Consensus       136 ~~ii~~~~~yHG~t~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~l~~~~~~va  202 (428)
T PRK12389        136 TKIIKFAGCYHGHSDL-------VLVAAGSGPSTLGTPDSAGVPKSIAQEVITVP------FNDIEALKEALDKWGDEVA  202 (428)
T ss_pred             CEEEEECCCcCCChHH-------HHHhcCCcccccCCCCCCCCCCcccCceEEcC------CCCHHHHHHHHHhcCCcEE
Confidence            6788777554443100       00111100           0      011111      23789998888642  345


Q ss_pred             EEEEcCC-CCCC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC--CCCCC-cccEEEeCCCcccCC-CCCce
Q 013217          172 LIIAGAS-AYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTTTHKSLRG-PRGGM  241 (447)
Q Consensus       172 lii~~~~-~~~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~--~~~~~-~~Di~~~s~~K~l~G-p~gG~  241 (447)
                      +|++.+. ...+ ..+    +++|.++|+++|+++|+|++| .|+ -.+..  ..-++ ..|++++  .|.++| .+.|.
T Consensus       203 avi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~-tG~-Rt~~~~a~~~~gv~PDivt~--gK~lggG~Pi~a  278 (428)
T PRK12389        203 AVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVI-TAF-RFMYGGAQDLLGVEPDLTAL--GKIIGGGLPIGA  278 (428)
T ss_pred             EEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccc-ccc-ccCcchhhHHhCCCCCeeee--chhhcCCCceeE
Confidence            6666522 2223 344    799999999999999999998 443 11110  00011 2588765  499854 33466


Q ss_pred             EEeecCCcchhhHHHHhhhc--cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH----CCcEe
Q 013217          242 IFFKKDPVLGVELESAINNA--VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----LGYKL  315 (447)
Q Consensus       242 i~~~~~~~~~~~~~~~i~~~--~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~  315 (447)
                      +++++      ++.+.+...  .+.+.+-+.++..+++..+.++.+.+++   ..++..+..++|.+.|++    .++..
T Consensus       279 v~~~~------~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~~~  349 (428)
T PRK12389        279 YGGRK------DIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQEG---VYEKLDRLGAMLEEGILEAAEKHGITI  349 (428)
T ss_pred             EeEHH------HHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence            67777      677766421  1111111234555555556777776543   466677777888877765    34321


Q ss_pred             -eeCCCCCeeEEecCCCCCC---------C---HHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHH
Q 013217          316 -VSGGSDNHLVLVDLRPMGI---------D---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEK  382 (447)
Q Consensus       316 -~~~~~~~~~~~v~~~~~~~---------~---~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~  382 (447)
                       +..+. . ++-+.+.....         +   ...+.+.|.++||.+...    .     ...+.  ++..++    ++
T Consensus       350 ~v~r~~-g-~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~----~-----~~~~~--~~l~~t----~e  412 (428)
T PRK12389        350 TINRLK-G-ALTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGINLAPS----K-----YEAWF--LTTAHT----EE  412 (428)
T ss_pred             EEEecC-c-EEEEEEeCCCCCChhhhcccCHHHHHHHHHHHHHCCcEeecC----C-----CCCee--ecCCCC----HH
Confidence             11111 1 22222211100         1   235667778899998542    1     11232  233444    99


Q ss_pred             HHHHHHHHHHHHHH
Q 013217          383 EFVAIADFIHEGVE  396 (447)
Q Consensus       383 di~~l~~~i~~~l~  396 (447)
                      |++++.+++++++.
T Consensus       413 ~id~~~~~l~~~l~  426 (428)
T PRK12389        413 DIEETLEAVDRAFA  426 (428)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998885

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.31  E-value=1.1e-08  Score=102.81  Aligned_cols=330  Identities=15%  Similarity=0.111  Sum_probs=171.7

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh--cCC
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP  109 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al--~~p  109 (447)
                      -.|.|.+++.+.+.+-.   +....+.. .+   ... ...+++.+++....+ .  ....+||++|+.+++...  ...
T Consensus        70 ~~p~i~~Ai~~ql~~~~---~~~~~~~~-~~---~~~-~lae~L~~~~p~~~~-~--v~f~~SGsEA~e~AlklAr~~tg  138 (457)
T PRK05639         70 SHPKLVKAVQEQVALIQ---HSMIGYTH-SE---RAI-RVAEKLAEISPIENP-K--VLFGLSGSDAVDMAIKVSKFSTR  138 (457)
T ss_pred             CCHHHHHHHHHHHHhcc---ccccCccC-CH---HHH-HHHHHHHhhCCCCcC-E--EEEeCchHHHHHHHHHHHHHhcC
Confidence            36889988888776421   11111111 11   111 123466666653322 1  233589999999887644  233


Q ss_pred             CCEEEEecCCCCcccCC-----Cc-cccccccccccceeEEEecccCCC---C--CCCCHH--------HHHHHhh----
Q 013217          110 HDRIMGLDLPHGGHLSH-----GF-MTPKRRVSGTSIYFESMPYRLDES---T--GLVDYD--------MLEKTAI----  166 (447)
Q Consensus       110 gd~Vl~~~~~~~~~~~~-----~~-~~~~~~~~~~g~~~~~~~~~~~~~---~--~~id~~--------~l~~~~~----  166 (447)
                      ..+|+...-.|.|.-..     +. ........-.-..+..++++....   .  ..-|.+        .+++.+.    
T Consensus       139 r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~  218 (457)
T PRK05639        139 RPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVV  218 (457)
T ss_pred             CCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhc
Confidence            45788776554332100     00 000000000000122233321100   0  001222        3444432    


Q ss_pred             -hhCCcEEEEcCC-CCCCC-C-C---hHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccCC
Q 013217          167 -LFRPKLIIAGAS-AYPRD-F-D---YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRG  236 (447)
Q Consensus       167 -~~~~klii~~~~-~~~~~-~-~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~G  236 (447)
                       ..++.+||+.+- ..++. . +   ++++.++|++||+++|+|++|. |+-..+.. . .-++ ..|++++  .|.++|
T Consensus       219 ~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~t-G~GrtG~~~a~~~~gv~PDiv~~--gK~l~g  295 (457)
T PRK05639        219 PPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQT-GIGRTGKWFASEWFEVKPDLIIF--GKGVAS  295 (457)
T ss_pred             CCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-ccCcCchHHHHHhcCCCCCEEEe--chhhcC
Confidence             225667777632 12221 1 1   6899999999999999999985 64222211 1 0011 3699985  599964


Q ss_pred             CC-CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH--CCc
Q 013217          237 PR-GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE--LGY  313 (447)
Q Consensus       237 p~-gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~  313 (447)
                      .- .|.+++++      ++.+..... ..++.+ .++..+++..++++.+.+++   ..++..+..++|.+.|++  .++
T Consensus       296 G~pi~av~~~~------~i~~~~~~~-~~~T~~-g~p~~~aaa~a~l~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~  364 (457)
T PRK05639        296 GMGLSGVIGRK------ELMDLTSGS-ALLTPA-ANPVISAAAEATLEIIEEEN---LLKNALKVGEFIKKRLLEMKESF  364 (457)
T ss_pred             CCcceeEEehH------HHHhhcCCC-cccCCC-cCHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHHHHHHhC
Confidence            33 38888887      565522211 112222 24444555555677665443   456666777788887766  233


Q ss_pred             EeeeC--CCCCeeEEecCCC-CCC-C---HHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHH
Q 013217          314 KLVSG--GSDNHLVLVDLRP-MGI-D---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVA  386 (447)
Q Consensus       314 ~~~~~--~~~~~~~~v~~~~-~~~-~---~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~  386 (447)
                      .++..  +.. -+.-+.+.. ... +   ...+.+.|.++|+.+...       +.....||+.++...|    ++|+++
T Consensus       365 ~~~~~VrG~G-l~~gve~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~-------g~~~~~lr~~Ppl~it----~~~id~  432 (457)
T PRK05639        365 EVIGDVRGKG-LMIGVEIVKENGKPDPELTGKICWRAFELGLILPSY-------GMFGNVIRITPPLVIT----KEIAEK  432 (457)
T ss_pred             CCEEeeccce-eEEEEEEecCCCCCCHHHHHHHHHHHHhCCeEEeec-------CCCCCEEEEeCCCccC----HHHHHH
Confidence            33321  111 112223321 110 1   235667778899998532       1113589999888777    999999


Q ss_pred             HHHHHHHHHHHH
Q 013217          387 IADFIHEGVEIT  398 (447)
Q Consensus       387 l~~~i~~~l~~~  398 (447)
                      +.+++++++...
T Consensus       433 ~~~~l~~~l~~~  444 (457)
T PRK05639        433 GLEIMERAIKDA  444 (457)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999754

>PRK06149 hypothetical protein; Provisional

Probab=99.31  E-value=5.6e-09  Score=114.41  Aligned_cols=205  Identities=14%  Similarity=0.072  Sum_probs=119.7

Q ss_pred             CCcEEEEcCC-CCCC-CCC----hHHHHHHHHHhCCEEEEehhh-hccccccccCCC-CCC-cccEEEeCCCcccCC-CC
Q 013217          169 RPKLIIAGAS-AYPR-DFD----YPRMRQIADAVGALLMMDMAH-ISGLVAASVVAD-PFK-YCDVVTTTTHKSLRG-PR  238 (447)
Q Consensus       169 ~~klii~~~~-~~~~-~~~----~~~i~~ia~~~g~~livD~a~-~~g~~~~~~~~~-~~~-~~Di~~~s~~K~l~G-p~  238 (447)
                      ++.+||+.+- ...+ ..+    ++++.++|++||+++|+|++| ..|-........ -++ ..|+++++  |.++| ..
T Consensus       744 ~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt~g--K~lg~G~P  821 (972)
T PRK06149        744 GLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIITMA--KGMGNGHP  821 (972)
T ss_pred             ceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEEEec--ccccCCee
Confidence            4556776521 2223 444    799999999999999999998 233322111000 011 36888664  99864 34


Q ss_pred             CceEEeecCCcchhhHHHHhhh-ccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC--CcEe
Q 013217          239 GGMIFFKKDPVLGVELESAINN-AVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKL  315 (447)
Q Consensus       239 gG~i~~~~~~~~~~~~~~~i~~-~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~  315 (447)
                      .|++++++      ++.+.+.. ..+..+++ .+...+++..+.++.+.+++   +.++..+..++|.+.|++.  ...+
T Consensus       822 l~av~~~~------~i~~~~~~~~~~~sT~~-gnP~~~aaala~L~~i~~e~---l~~~~~~~G~~l~~~L~~l~~~~~~  891 (972)
T PRK06149        822 LGAVITRR------EIAEALEAEGYFFSSTG-GSPVSCRIGMAVLDVLREEK---LQENARRVGDHLKARLEALADRHPL  891 (972)
T ss_pred             eEEEEEcH------HHHhhhccCCcccCCCC-CCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            58888887      67776653 11212222 34445555555677765543   3556666667777777652  1222


Q ss_pred             eeC--CCCCeeEEecCCCC----CCC---HHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHH
Q 013217          316 VSG--GSDNHLVLVDLRPM----GID---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVA  386 (447)
Q Consensus       316 ~~~--~~~~~~~~v~~~~~----~~~---~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~  386 (447)
                      +..  +..- +.-+.+...    .-+   ...+.+.|.++||.+...   +    .....||+.++...+    ++|+++
T Consensus       892 i~~vrG~Gl-~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~---g----~~~~vl~~~Ppl~it----~~~id~  959 (972)
T PRK06149        892 IGAVHGMGL-YLGVELVRDRQTLEPATEETAAICDRLLELGVIMQPT---G----DHLNILKIKPPLCLD----RESADF  959 (972)
T ss_pred             eEEEeecce-EEEEEEecCcccCCCChHHHHHHHHHHHhCCeEEeec---C----CCCCEEEEECCCcCC----HHHHHH
Confidence            221  1111 222233110    001   245777788899998532   1    113479998887666    999999


Q ss_pred             HHHHHHHHHHH
Q 013217          387 IADFIHEGVEI  397 (447)
Q Consensus       387 l~~~i~~~l~~  397 (447)
                      +.+++.+++..
T Consensus       960 ~~~~l~~~l~~  970 (972)
T PRK06149        960 FVDMLDRVLTE  970 (972)
T ss_pred             HHHHHHHHHHh
Confidence            99999999863

>PRK07481 hypothetical protein; Provisional

Probab=99.31  E-value=5.2e-09  Score=105.20  Aligned_cols=201  Identities=16%  Similarity=0.218  Sum_probs=117.9

Q ss_pred             CCcEEEEcCC-CCCCC-CC----hHHHHHHHHHhCCEEEEehhhhcccccccc-CC-CCCC-cccEEEeCCCcccCCC--
Q 013217          169 RPKLIIAGAS-AYPRD-FD----YPRMRQIADAVGALLMMDMAHISGLVAASV-VA-DPFK-YCDVVTTTTHKSLRGP--  237 (447)
Q Consensus       169 ~~klii~~~~-~~~~~-~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~-~~~~-~~Di~~~s~~K~l~Gp--  237 (447)
                      ++.+|++.+. ..++. .+    +++++++|++||+++|.|+++ .|+--.+. .. .-++ ..|+++.+  |.++|.  
T Consensus       213 ~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~-tGfGRtG~~~a~~~~gv~PDiv~~g--Kgl~gG~~  289 (449)
T PRK07481        213 TIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVV-TGFGRTGSWFGSRGWGVKPDIMCLA--KGITSGYV  289 (449)
T ss_pred             cEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehh-hCcCcCchhhHhhhcCCCCCEEEEe--ecccCCCc
Confidence            4567777632 12232 22    689999999999999999997 44422221 00 0011 26998886  998653  


Q ss_pred             CCceEEeecCCcchhhHHHHhhhc------cCC-CCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH
Q 013217          238 RGGMIFFKKDPVLGVELESAINNA------VFP-GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE  310 (447)
Q Consensus       238 ~gG~i~~~~~~~~~~~~~~~i~~~------~~~-~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~  310 (447)
                      +.|.+++++      ++.+.+...      ... ++.+ .++..+++..+.++.+.+++   ..++..+..++|.+.|++
T Consensus       290 Pi~av~~~~------~i~~~~~~~~~~~~~~~h~~T~~-gnpl~~aaa~a~L~~l~~~~---l~~~~~~~g~~l~~~L~~  359 (449)
T PRK07481        290 PLGATMVNA------RIADAFEANADFGGAIMHGYTYS-GHPVACAAALATLDIVVRED---LPANAAKRGAYLLEGLQP  359 (449)
T ss_pred             CceEEEEcH------HHHHHHhccCccccccccCCCCC-CCHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHH
Confidence            457777777      676666432      111 1222 24445555555677665443   355666667777777765


Q ss_pred             C--CcEeeeC--CCCCeeEEecCCCC-----CCC-----HHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCcccc
Q 013217          311 L--GYKLVSG--GSDNHLVLVDLRPM-----GID-----GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTT  376 (447)
Q Consensus       311 ~--g~~~~~~--~~~~~~~~v~~~~~-----~~~-----~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~  376 (447)
                      .  ...++..  +.. .+.-+.+...     ..+     ...+...|.++||.+...          ...+|++++...|
T Consensus       360 l~~~~~~i~~vrG~G-lm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~----------g~~i~l~Ppl~it  428 (449)
T PRK07481        360 LKERFELVGDVRGKG-LMLALDLVADKATREPIDPSKGYANAVADVARENGVLVRPS----------GTKIILSPPLVIQ  428 (449)
T ss_pred             HhhcCCCeEEEeecc-eEEEEEecccccccCCCCchhHHHHHHHHHHHhCCeEEEec----------CCEEEEECCCCCC
Confidence            2  2222221  111 1222333211     001     234666778899998531          1358998776666


Q ss_pred             CCCCHHHHHHHHHHHHHHHHH
Q 013217          377 RGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       377 ~g~~~~di~~l~~~i~~~l~~  397 (447)
                          ++|++++.+++.+++..
T Consensus       429 ----~~eid~~~~~l~~~l~~  445 (449)
T PRK07481        429 ----REDVDRIVDALDAGLSA  445 (449)
T ss_pred             ----HHHHHHHHHHHHHHHHh
Confidence                99999999999999874

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=99.30  E-value=2.1e-09  Score=107.68  Aligned_cols=308  Identities=16%  Similarity=0.127  Sum_probs=163.9

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc-CCC
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL-KPH  110 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~-~pg  110 (447)
                      -.|.|.+|+.+.+....  .+      . ...  ..+....+++.+++... + .  ....+||++|+.+++.... -.|
T Consensus        65 ~~p~v~~Ai~~q~~~~~--~~------~-~~~--~~~~~la~~l~~~~p~~-~-~--v~f~~sGseA~e~AlklAr~~tg  129 (431)
T PRK06209         65 AYPPVVEAVREALQDGC--NF------T-RPS--AIELDAAESFLELIDGA-D-M--VKFCKNGSDATSAAVRLARAYTG  129 (431)
T ss_pred             CCHHHHHHHHHHHHhCc--CC------C-CCC--HHHHHHHHHHHHhCCcc-c-e--EEEecCHHHHHHHHHHHHHHHhC
Confidence            37889999888776421  11      1 011  12212234666666321 1 1  2346899999998887432 123


Q ss_pred             -CEEEEec-CC-CCcc-cCCCccccccccccccce--e--EEEecccCCCCCCCCHHHHHHHhhhh--CCcEEEEcCCCC
Q 013217          111 -DRIMGLD-LP-HGGH-LSHGFMTPKRRVSGTSIY--F--ESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASAY  180 (447)
Q Consensus       111 -d~Vl~~~-~~-~~~~-~~~~~~~~~~~~~~~g~~--~--~~~~~~~~~~~~~id~~~l~~~~~~~--~~klii~~~~~~  180 (447)
                       .+|+... -. |+.+ ..|+..    .. ..+..  .  ....++      .-|+++++++++..  ++.+|++. |.+
T Consensus       130 r~~i~~~~~~~~h~~~~~~~g~~----~~-~~~~~~~~~~~~~~~~------~~d~~~l~~~l~~~~~~~aavi~E-pv~  197 (431)
T PRK06209        130 RDLVARCADHPFFSTDDWFIGTT----PM-SAGIPASVSALTVTFR------YNDIASLEALFEDHPGRIACVILE-PAT  197 (431)
T ss_pred             CCeEEEeccCccccccccccccC----CC-CCCCChhHhccccccC------CCCHHHHHHHHHhCCCCEEEEEEc-ccc
Confidence             4565541 11 1101 001110    00 00100  0  011111      23789999888642  34566665 333


Q ss_pred             CC---CCChHHHHHHHHHhCCEEEEehhhhcccccccc-CCCCCC-cccEEEeCCCcccCC-CCCceEEeecCCcchhhH
Q 013217          181 PR---DFDYPRMRQIADAVGALLMMDMAHISGLVAASV-VADPFK-YCDVVTTTTHKSLRG-PRGGMIFFKKDPVLGVEL  254 (447)
Q Consensus       181 ~~---~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~~~~~-~~Di~~~s~~K~l~G-p~gG~i~~~~~~~~~~~~  254 (447)
                      +.   ...+++|.++|++||+++|+|++| .|+...+. ...-++ ..|++++  .|.++| ..+|++++++      ++
T Consensus       198 g~~~~~~~l~~l~~lc~~~g~lLI~DEv~-tG~~~~~~g~~~~~gv~PDi~t~--gK~lggG~p~~av~~~~------~i  268 (431)
T PRK06209        198 ADEPQDGFLHEVRRLCHENGALFILDEMI-TGFRWHMRGAQKLYGIVPDLSCF--GKALGNGFAVSALAGKR------EY  268 (431)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCEEEEEccc-ccCCcCcchhhHHhCCCcceeee--hhhhcCCcccEEEEEHH------HH
Confidence            22   334899999999999999999998 66532210 000011 2587665  599864 4568888877      66


Q ss_pred             HHH--hhh----ccC-CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH----CCcEee--eCCCC
Q 013217          255 ESA--INN----AVF-PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----LGYKLV--SGGSD  321 (447)
Q Consensus       255 ~~~--i~~----~~~-~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~--~~~~~  321 (447)
                      .+.  +..    ..+ .+..-++++..+++..++++.+.+++   ..+++.++.++|++.|++    .++...  ..+..
T Consensus       269 ~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~---~~~~~~~~g~~l~~~L~~~~~~~~~~~~vr~~G~~  345 (431)
T PRK06209        269 MELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDED---VIERLHEQGAKLAAGVNEAAAEHGLQDHVRVSGRP  345 (431)
T ss_pred             HhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeecce
Confidence            664  211    111 11222345566777777888876554   356666667777777654    344321  11221


Q ss_pred             CeeEEecCCCCCCCH----HHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          322 NHLVLVDLRPMGIDG----ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       322 ~~~~~v~~~~~~~~~----~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      ..+.++...+.+...    ..+.+.|.+.||.+     |         .++++  ..+|    ++|++++.+++.+++..
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~-----p---------~l~is--~~ht----~~dId~~l~~l~~~l~~  405 (431)
T PRK06209        346 CCLTYSTLDGNGQPSQAFRTLFLQETIRRGVLM-----P---------SLVVS--YAHG----DADIERTIDAVHGALGV  405 (431)
T ss_pred             EEEEEecCCcccCCcHHHHHHHHHHHHHCCccc-----c---------ccccc--ccCC----HHHHHHHHHHHHHHHHH
Confidence            122222111111111    24556677889975     1         14444  3445    99999999999999986


Q ss_pred             H
Q 013217          398 T  398 (447)
Q Consensus       398 ~  398 (447)
                      .
T Consensus       406 ~  406 (431)
T PRK06209        406 Y  406 (431)
T ss_pred             H
Confidence            5

>PRK07483 hypothetical protein; Provisional

Probab=99.29  E-value=5.4e-09  Score=104.86  Aligned_cols=221  Identities=18%  Similarity=0.167  Sum_probs=126.4

Q ss_pred             HHHHHHhhh---hCCcEEEEcCCC--CCC-CC-C---hHHHHHHHHHhCCEEEEehhhhcccccccc-CC-CCCC-cccE
Q 013217          159 DMLEKTAIL---FRPKLIIAGASA--YPR-DF-D---YPRMRQIADAVGALLMMDMAHISGLVAASV-VA-DPFK-YCDV  225 (447)
Q Consensus       159 ~~l~~~~~~---~~~klii~~~~~--~~~-~~-~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~-~~~~-~~Di  225 (447)
                      +++++++..   .++.+|++.+-.  .++ .. +   +++++++|++||+++|+|+++. |+--.+. .. .-++ ..|+
T Consensus       186 ~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-GfGRtG~~~a~~~~gv~PDi  264 (443)
T PRK07483        186 DELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMC-GMGRTGTLFACEEDGVAPDL  264 (443)
T ss_pred             HHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEeccee-CcccCcHHHHHhhcCCCCCe
Confidence            566665542   245677776322  223 11 1   6899999999999999999974 4422221 10 0011 2689


Q ss_pred             EEeCCCcccCCC--CCceEEeecCCcchhhHHHHhhhcc---CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHH
Q 013217          226 VTTTTHKSLRGP--RGGMIFFKKDPVLGVELESAINNAV---FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN  300 (447)
Q Consensus       226 ~~~s~~K~l~Gp--~gG~i~~~~~~~~~~~~~~~i~~~~---~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~  300 (447)
                      ++++  |.+.|.  +.|.+++++      ++.+.+....   ..+.+-+.+...+++..+.++.+.+++   +.++..+.
T Consensus       265 v~~g--K~l~gG~~Pi~av~~~~------~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~~---l~~~~~~~  333 (443)
T PRK07483        265 VTIA--KGLGAGYQPIGAVLASD------RIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAEDG---LLANVRAR  333 (443)
T ss_pred             eeeh--hhhccCccccEEEEEcH------HHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHH
Confidence            9886  998644  467777877      6766664321   111111234455555555677665544   35666677


Q ss_pred             HHHHHHHHHH--CCcEeeeC--CCCCeeEEecCCCC-------CC---CHHHHHHHHhhcCeEEccCCCCCCCCCCCCCe
Q 013217          301 CRALASRLVE--LGYKLVSG--GSDNHLVLVDLRPM-------GI---DGARVEKILDMASITLNKNSVPGDKSALVPGG  366 (447)
Q Consensus       301 ~~~l~~~L~~--~g~~~~~~--~~~~~~~~v~~~~~-------~~---~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~  366 (447)
                      .++|.+.|++  ....++..  +.. .+.-+.+...       ..   ....+.+.+.++||.+....  +......+..
T Consensus       334 g~~l~~~L~~l~~~~~~i~~vRG~G-lm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~--~~~~~~~~~~  410 (443)
T PRK07483        334 GEQLRARLRERLGQHPHVGDIRGRG-LFVGVELVADRATKAPFDPALKLHARIKREAMARGLMVYPMG--GTIDGVRGDH  410 (443)
T ss_pred             HHHHHHHHHHHHhcCCCeeeEeecc-cEEEEEEeecccccCCCCchhhHHHHHHHHHHHCCcEEEecC--ccccCCCCCE
Confidence            7777777764  12222221  111 1122232110       00   12356677788999985310  0000011347


Q ss_pred             EEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          367 IRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       367 iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      ||+.++...+    ++|++++.+++.++|...
T Consensus       411 l~~~PpL~it----~~eid~~~~~l~~~l~~~  438 (443)
T PRK07483        411 VLLAPPFIIT----AAQIDEIVERLGDAIDAA  438 (443)
T ss_pred             EEEECCCCCC----HHHHHHHHHHHHHHHHHH
Confidence            9999887776    999999999999999754

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.29  E-value=7.7e-09  Score=104.25  Aligned_cols=322  Identities=17%  Similarity=0.119  Sum_probs=173.4

Q ss_pred             CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc---
Q 013217           31 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---  107 (447)
Q Consensus        31 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~---  107 (447)
                      .-.|.|.+++.+.+.+- ..+...  .+ ..+    .+....+++.+++....+.   ....+||++|+.+++....   
T Consensus        72 h~~p~v~~Ai~~ql~~l-~~~~~~--~~-~~~----~~~~lae~L~~~~p~~~~~---v~f~~SGseAve~AlklAr~~~  140 (460)
T PRK06916         72 HQVPELDEAIREQLNKI-AHSTLL--GL-ANV----PSILLAEKLIEVVPEGLKK---VFYSDSGATAVEIAIKMAFQYW  140 (460)
T ss_pred             CCCHHHHHHHHHHHHhC-CCcccc--cc-CCH----HHHHHHHHHHHhCCCCCCE---EEEeCCcHHHHHHHHHHHHHHH
Confidence            34788888888777641 111110  01 111    1112335676776432221   3446899999998876432   


Q ss_pred             ----CCC-CEEEEecCCCCcccCCCccccccccccccc------------eeEEEecccC---CCCC------CCCHHHH
Q 013217          108 ----KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRLD---ESTG------LVDYDML  161 (447)
Q Consensus       108 ----~pg-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~------------~~~~~~~~~~---~~~~------~id~~~l  161 (447)
                          .+| .+|+...-.|.|... +      .+.+++.            ....++++..   +...      .-+++++
T Consensus       141 ~~~g~tgr~~ii~~~~~YHG~t~-~------als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l  213 (460)
T PRK06916        141 QNKGKPKKQRFVTLKNAYHGDTI-G------AVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEEL  213 (460)
T ss_pred             HhcCCCCCcEEEEECCcCCcccH-H------hHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHH
Confidence                233 578887766544210 0      0111110            0111222210   0000      1235667


Q ss_pred             HHHhhh--hCCcEEEEcC--CCCCCC--CC---hHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeC
Q 013217          162 EKTAIL--FRPKLIIAGA--SAYPRD--FD---YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTT  229 (447)
Q Consensus       162 ~~~~~~--~~~klii~~~--~~~~~~--~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s  229 (447)
                      ++.++.  .++.+|++.+  ...++.  .+   +++++++|+++|+++|+|+++ .|+--.+.. . ..++ ..|+++++
T Consensus       214 ~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~-TG~GRtG~~~a~~~~gv~PDiv~~g  292 (460)
T PRK06916        214 EELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVA-TGFGRTGKMFACEHENVTPDIMTAG  292 (460)
T ss_pred             HHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechh-hCCCcCchhhHHHhcCCCCCeeeee
Confidence            777753  2456777764  122231  12   589999999999999999997 554222211 0 0011 26888765


Q ss_pred             CCcccCCC--CCceEEeecCCcchhhHHHHhhh------ccCC-CCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHH
Q 013217          230 THKSLRGP--RGGMIFFKKDPVLGVELESAINN------AVFP-GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN  300 (447)
Q Consensus       230 ~~K~l~Gp--~gG~i~~~~~~~~~~~~~~~i~~------~~~~-~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~  300 (447)
                        |.|+|.  +.|.+++++      ++.+.+..      ..+. ++.++ +...+++..+.++.+.+++   +.+++.+.
T Consensus       293 --K~l~gG~~Pi~av~~~~------ei~~~~~~~~~~~~~~~~~~T~~g-npl~~aaa~a~l~~l~~~~---l~~~~~~~  360 (460)
T PRK06916        293 --KGLTGGYLPIAITVTTD------EIYNAFYGDYEEQKTFFHGHSYTG-NPLGCAVALANLELYEKTN---LIEQVARK  360 (460)
T ss_pred             --hhhhcCccccceeeecH------HHHHHhhccccccCccccCCCCCC-CHHHHHHHHHHHHHHHhcc---HHHHHHHH
Confidence              988543  457777777      66665532      1112 22222 4445555555677665444   45667777


Q ss_pred             HHHHHHHHHHC-CcEeeeC--CCCCeeEEecCCCCC-------CC---HHHHHHHHhhcCeEEccCCCCCCCCCCCCCeE
Q 013217          301 CRALASRLVEL-GYKLVSG--GSDNHLVLVDLRPMG-------ID---GARVEKILDMASITLNKNSVPGDKSALVPGGI  367 (447)
Q Consensus       301 ~~~l~~~L~~~-g~~~~~~--~~~~~~~~v~~~~~~-------~~---~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~i  367 (447)
                      .++|.+.|++. ....+..  +... +.-+.+....       .+   ...+...|.++||.+...          ...+
T Consensus       361 g~~l~~~l~~l~~~~~v~~vrG~Gl-m~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~----------g~~l  429 (460)
T PRK06916        361 TEYVATQLEDLFALKHVGDIRQLGL-MVGIELVKNKETKEPFEWTERVGVQVCKRSRELGMLTRPL----------GNTI  429 (460)
T ss_pred             HHHHHHHHHHhhcCCCeEEeecCCc-eeeEEeecccccccCCCchhhHHHHHHHHHHHCCeEEEec----------CCEE
Confidence            77787777662 1221211  1111 1222222110       01   245667788899998431          2479


Q ss_pred             EEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          368 RIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       368 Rig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      |+.++...+    ++|++++.+++.+++...
T Consensus       430 ~~~Ppl~it----~~~id~~~~~l~~~l~~~  456 (460)
T PRK06916        430 VFMPPLAST----IDELDEMLRILYKAISDV  456 (460)
T ss_pred             EEeCCcccC----HHHHHHHHHHHHHHHHhh
Confidence            998777666    999999999999998743

>PRK06917 hypothetical protein; Provisional

Probab=99.29  E-value=7.5e-09  Score=103.95  Aligned_cols=331  Identities=15%  Similarity=0.119  Sum_probs=176.3

Q ss_pred             CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc---
Q 013217           31 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---  107 (447)
Q Consensus        31 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~---  107 (447)
                      +-.|.|.+++.+.+... ...++. .+ . .    +.+....+++.+++....+ +  ...++|||+|+.+++....   
T Consensus        47 h~hp~v~~Ai~~ql~~~-~~~~~~-~~-~-~----~~~~~lae~L~~~~p~~~~-~--v~f~~sGsEAve~AlklAr~~~  115 (447)
T PRK06917         47 HGVKEIADAIKEQAEEV-SFVYRS-QF-T-S----EPAEKLAKKLSDLSPGDLN-W--SFFVNSGSEANETAMKIAIQHF  115 (447)
T ss_pred             CCCHHHHHHHHHHHhhC-cCcccc-cc-C-C----HHHHHHHHHHHHhCCCCCC-E--EEEeCChHHHHHHHHHHHHHHH
Confidence            34799999988877642 111111 11 1 1    1122233566666643222 2  2345899999998887541   


Q ss_pred             ----CCC-CEEEEecCCCCcccCCCccccccccccccc------------eeEEEecccCCC---CC------CCCHHHH
Q 013217          108 ----KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRLDES---TG------LVDYDML  161 (447)
Q Consensus       108 ----~pg-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~------------~~~~~~~~~~~~---~~------~id~~~l  161 (447)
                          .+| .+|+...-.|.|... +      .+...+.            .+..++.+....   +.      .-|.+.+
T Consensus       116 ~~rg~t~r~~ii~~~~~yHG~t~-~------als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l  188 (447)
T PRK06917        116 QERGIQGKHKILSRWMSYHGITM-G------ALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATEL  188 (447)
T ss_pred             HhcCCCCCCEEEEECCCcCCccH-H------HHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHHHH
Confidence                133 678887655433310 0      0011110            011111111000   00      0134667


Q ss_pred             HHHhhhh---CCcEEEEcCCC--CCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEe
Q 013217          162 EKTAILF---RPKLIIAGASA--YPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTT  228 (447)
Q Consensus       162 ~~~~~~~---~~klii~~~~~--~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~  228 (447)
                      +++++.+   ++.+|++.+-.  .++  ..+   ++++.++|++||+++|+|+++. |+--.+.. . .-++ ..|++++
T Consensus       189 e~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~t-GfGRtG~~~a~~~~gv~PDi~~~  267 (447)
T PRK06917        189 ETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMT-GLGRTGAMFAMEHWGVEPDIMTL  267 (447)
T ss_pred             HHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhh-CcCcccchhhHHhcCCCCCEEEe
Confidence            7777642   45677776321  222  112   5899999999999999999984 54222211 0 0011 2588877


Q ss_pred             CCCcccCCC--CCceEEeecCCcchhhHHHHhhhc---cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHH
Q 013217          229 TTHKSLRGP--RGGMIFFKKDPVLGVELESAINNA---VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRA  303 (447)
Q Consensus       229 s~~K~l~Gp--~gG~i~~~~~~~~~~~~~~~i~~~---~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~  303 (447)
                      +  |.++|.  +.|.+++++      ++.+.+...   .+.+.+-+.+...+++..+.++.+.+++   +.+++.+..++
T Consensus       268 g--K~l~~G~~Pi~a~~~~~------~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~---l~~~~~~~g~~  336 (447)
T PRK06917        268 G--KGLGAGYTPIAATVVSD------RVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEKHN---LPEKAAEKGEY  336 (447)
T ss_pred             e--ehhccCCcceEEEEEcH------HHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHHCC---HHHHHHHHHHH
Confidence            5  999653  467777777      676665432   1121111234555666556777665444   45666777777


Q ss_pred             HHHHHHHC--CcEeeeC--CCCCeeEEecCCCC-----CC-----CHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEE
Q 013217          304 LASRLVEL--GYKLVSG--GSDNHLVLVDLRPM-----GI-----DGARVEKILDMASITLNKNSVPGDKSALVPGGIRI  369 (447)
Q Consensus       304 l~~~L~~~--g~~~~~~--~~~~~~~~v~~~~~-----~~-----~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRi  369 (447)
                      |.+.|++.  ...++..  +.. .+.-+.+...     ..     ....+.+.|.++||.+....  ..........+|+
T Consensus       337 l~~~L~~l~~~~~~i~~vrG~G-l~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~--~~~~g~~~~~i~l  413 (447)
T PRK06917        337 LIKGLQKVQQQSTIIGDVRGKG-LLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAV--AGQDGKEGDAVII  413 (447)
T ss_pred             HHHHHHHHHhcCCCEEEEeecc-eEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhCCcEEEecc--cccCCCCCCEEEE
Confidence            77777652  1222221  111 1222333110     00     13446667788999985320  0000011357999


Q ss_pred             ecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          370 GSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       370 g~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      .++...|    ++|++++++++.+++...
T Consensus       414 ~Ppl~it----~~eid~~~~~l~~~l~~~  438 (447)
T PRK06917        414 APPMTIT----YSELDELLSIFAKSVEEM  438 (447)
T ss_pred             ECCCcCC----HHHHHHHHHHHHHHHHHH
Confidence            9887777    999999999999999754

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.28  E-value=1.2e-08  Score=102.82  Aligned_cols=215  Identities=14%  Similarity=0.098  Sum_probs=120.8

Q ss_pred             CHHHHHHHhhh--hCCcEEEEcC-C-CCCCC--CC---hHHHHHHHHHhCCEEEEehhhhcccccccc-CCC-CCC-ccc
Q 013217          157 DYDMLEKTAIL--FRPKLIIAGA-S-AYPRD--FD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VAD-PFK-YCD  224 (447)
Q Consensus       157 d~~~l~~~~~~--~~~klii~~~-~-~~~~~--~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~~-~~~-~~D  224 (447)
                      +++.+++.+..  .++.+||+.+ . ..++.  .+   +++++++|++||+++|+|+++ .|+--.+. +.. -.+ ..|
T Consensus       222 ~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~-TGfGRtG~~~a~e~~gv~PD  300 (472)
T PRK08742        222 AADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIA-TGFGRTGTLFACEQAGVMPD  300 (472)
T ss_pred             HHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechh-hCCCCCccchHHHhcCCCCC
Confidence            35667777653  2456677764 1 22331  12   589999999999999999997 44322221 100 011 269


Q ss_pred             EEEeCCCcccCCC--CCceEEeecCCcchhhHHHHhhhc-----cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHH
Q 013217          225 VVTTTTHKSLRGP--RGGMIFFKKDPVLGVELESAINNA-----VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKV  297 (447)
Q Consensus       225 i~~~s~~K~l~Gp--~gG~i~~~~~~~~~~~~~~~i~~~-----~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~  297 (447)
                      +++++  |.|+|.  +.|.+++++      ++.+.+...     ...+.+-+.+...+++..+.++.+.++++   .++.
T Consensus       301 iv~~g--Kgl~gG~~Plaav~~~~------ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~~l---~~~~  369 (472)
T PRK08742        301 LLCLS--KGLTGGFLPLSAVLATQ------QLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADDDV---IARN  369 (472)
T ss_pred             EEEEc--ccccCCCCCcceeeccH------HHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHHCCH---HHHH
Confidence            99986  998643  457777777      566655321     11111112345556666667777665554   3333


Q ss_pred             HHHHHHHHHHHHHC-CcEeeeC--CCCCeeEEecCCCCC-------CC---HHHHHHHHhhcCeEEccCCCCCCCCCCCC
Q 013217          298 VSNCRALASRLVEL-GYKLVSG--GSDNHLVLVDLRPMG-------ID---GARVEKILDMASITLNKNSVPGDKSALVP  364 (447)
Q Consensus       298 ~~~~~~l~~~L~~~-g~~~~~~--~~~~~~~~v~~~~~~-------~~---~~~~~~~L~~~gI~v~~~~~p~~~~~~~~  364 (447)
                      .+..++|.+.++.. ...++.+  +.. .+.-+.+....       .+   ...+.+.+.++||.+...          .
T Consensus       370 ~~~g~~l~~~~~~~~~~~~i~dvRG~G-l~~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~----------g  438 (472)
T PRK08742        370 QPTAARMTQLAAQIGEHPHVADVRQAG-MVVAFELTRGGNKRTPFPPAARVGLHAYRAALARGVVLRPL----------G  438 (472)
T ss_pred             HHHHHHHHHHHHHHhcCCCeeeEeccc-eEEEEEeccCccccccCCchhHHHHHHHHHHHHCCeEEEec----------C
Confidence            33344444333221 1222221  111 12222332110       00   134566677899998531          2


Q ss_pred             CeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          365 GGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       365 ~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      +.||+.++...+    ++|++++.++|.++|...
T Consensus       439 ~vi~~~PpL~it----~~ei~~~~~~l~~~l~~~  468 (472)
T PRK08742        439 DVLYWMPPYCVD----EAQLALLADTTRHAIDEA  468 (472)
T ss_pred             CEEEEECCCCCC----HHHHHHHHHHHHHHHHHH
Confidence            479998887766    999999999999999754

>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]

Probab=99.28  E-value=2.8e-09  Score=99.36  Aligned_cols=304  Identities=16%  Similarity=0.173  Sum_probs=174.7

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-HHHHHHHHHh-cCC
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAI-LKP  109 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a~~~~~~al-~~p  109 (447)
                      .|..+++.....+..  ..|..|.  |...+.+.-+.+.+.+.+.+.=| .+..+ -+|..|+|+ .|+..++.-+ ..+
T Consensus        87 fp~Dai~RA~~~L~~--~gGs~Ga--YS~SqGv~~vR~~VA~~I~rRDG-~p~~p-~dI~LT~GAS~ai~~il~l~~~~~  160 (475)
T KOG0258|consen   87 FPTDAIKRAKRILND--CGGSLGA--YSDSQGVPGVRKHVAEFIERRDG-IPADP-EDIFLTTGASPAIRSILSLLIAGK  160 (475)
T ss_pred             CCHHHHHHHHHHHHh--cCCcccc--cccccCChhHHHHHHHHHHhccC-CCCCH-HHeeecCCCcHHHHHHHHHHhcCC
Confidence            566666666666654  3344443  44445555666555666666667 33223 245568887 7777777666 467


Q ss_pred             CCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-CCCCCHHHHHHHhhh----hCCcEEEEcCCCCCC--
Q 013217          110 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAIL----FRPKLIIAGASAYPR--  182 (447)
Q Consensus       110 gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~~~~----~~~klii~~~~~~~~--  182 (447)
                      .|-|+++-|.|+=+        ...+...|.  ..++|-+|++ +|.+|.++|++..++    .+|+++++-.|.||+  
T Consensus       161 ~~GvliPiPQYPLY--------sAti~l~~~--~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGq  230 (475)
T KOG0258|consen  161 KTGVLIPIPQYPLY--------SATISLLGG--TQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQ  230 (475)
T ss_pred             CCceEeecCCCchh--------HHHHHHhCC--cccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccch
Confidence            88999998876422        223444444  5567767754 689999999987654    367766555566665  


Q ss_pred             ---CCChHHHHHHHHHhCCEEEEehhhhcccccccc--CC----------CCCC-cc-cEEEeCCCccc---CCCCCceE
Q 013217          183 ---DFDYPRMRQIADAVGALLMMDMAHISGLVAASV--VA----------DPFK-YC-DVVTTTTHKSL---RGPRGGMI  242 (447)
Q Consensus       183 ---~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~--~~----------~~~~-~~-Di~~~s~~K~l---~Gp~gG~i  242 (447)
                         ...+++|..+|.+.|+.++.|+++ -..++.+.  +.          .+.+ .. -+...|+||.+   +|.|||++
T Consensus       231 vls~e~ie~i~~fa~~~~l~llaDEVY-Q~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYm  309 (475)
T KOG0258|consen  231 VLSEENIEGIICFAAEEGLVLLADEVY-QDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYM  309 (475)
T ss_pred             hhcHHHHHHHHHHHHHcCeEEechHHH-HhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCee
Confidence               346899999999999999999984 23233321  10          1111 11 14456778876   68999987


Q ss_pred             EeecCCcchhhHHHHh------------------hhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHH
Q 013217          243 FFKKDPVLGVELESAI------------------NNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL  304 (447)
Q Consensus       243 ~~~~~~~~~~~~~~~i------------------~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l  304 (447)
                      =+-+-.   ++..+.+                  +..+.|-..|.++.....+           +-+.....+.++++.+
T Consensus       310 Ev~n~~---prv~~qi~Kl~si~lc~~V~GQ~~vdl~VnPP~Pgd~Sy~~~~~-----------Ekd~il~~l~~ra~l~  375 (475)
T KOG0258|consen  310 ESLNRD---PRVKQQIKKLASIKLCPQVSGQKLVDLVVNPPKPGDPSYDLFSS-----------EKDGILSSLRSRAKLT  375 (475)
T ss_pred             ecccCC---hhHHHHHHHHHhhhhcCCccchhhhceecCCCCCCCcchhhhhh-----------hhHhHHHHHHHHhHHH
Confidence            432210   0222111                  1122233344444433221           1233455677778888


Q ss_pred             HHHHHH-CCcEeeeCCCCCeeEE--ecCCC--------CCCCHHH--HHHHHhhcCeEEccCCCCCCCCCCCCC--eEEE
Q 013217          305 ASRLVE-LGYKLVSGGSDNHLVL--VDLRP--------MGIDGAR--VEKILDMASITLNKNSVPGDKSALVPG--GIRI  369 (447)
Q Consensus       305 ~~~L~~-~g~~~~~~~~~~~~~~--v~~~~--------~~~~~~~--~~~~L~~~gI~v~~~~~p~~~~~~~~~--~iRi  369 (447)
                      .+.+++ .|+.+... ....+.+  ++++.        .++.++.  +.++|+.-||.+    +||......++  .+|.
T Consensus       376 ~~~~ns~~gi~cn~~-qGAMY~fP~i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcv----VPGSGFGQ~~GtyH~R~  450 (475)
T KOG0258|consen  376 EDAFNSLEGISCNPV-QGAMYLFPQISLPPKAIEAAKALGIAPDEFYCLKLLEATGICV----VPGSGFGQKEGTYHFRT  450 (475)
T ss_pred             HHHHhhcCceeeccC-ccceeecccccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEE----ecCCCCCCCCceeEEEE
Confidence            888887 57776542 1222221  23322        1233333  456788899998    66665333333  4776


Q ss_pred             ec
Q 013217          370 GS  371 (447)
Q Consensus       370 g~  371 (447)
                      ..
T Consensus       451 Ti  452 (475)
T KOG0258|consen  451 TI  452 (475)
T ss_pred             ee
Confidence            43

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.27  E-value=1.1e-08  Score=103.26  Aligned_cols=214  Identities=14%  Similarity=0.119  Sum_probs=126.5

Q ss_pred             HHHHHHHhhh--hCCcEEEEcC-C-CCCCC--CC---hHHHHHHHHHhCCEEEEehhhhcccccccc-CC-CCCC-cccE
Q 013217          158 YDMLEKTAIL--FRPKLIIAGA-S-AYPRD--FD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VA-DPFK-YCDV  225 (447)
Q Consensus       158 ~~~l~~~~~~--~~~klii~~~-~-~~~~~--~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~-~~~~-~~Di  225 (447)
                      ++++++.+..  .+..+|++.+ . ...+.  .+   +++++++|++||+++|+|+++ .|+--.+. .. ..++ ..|+
T Consensus       201 l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~-TGfGRtG~~~a~~~~gv~PDi  279 (466)
T PRK07030        201 FAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIA-VGFGRTGTMFACEQAGIRPDF  279 (466)
T ss_pred             HHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehh-hCcCccccchHHHhcCCCCCE
Confidence            5667777753  2456677764 1 22231  11   689999999999999999997 44321221 00 0011 2699


Q ss_pred             EEeCCCcccCCC--CCceEEeecCCcchhhHHHHhhhc------cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHH
Q 013217          226 VTTTTHKSLRGP--RGGMIFFKKDPVLGVELESAINNA------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKV  297 (447)
Q Consensus       226 ~~~s~~K~l~Gp--~gG~i~~~~~~~~~~~~~~~i~~~------~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~  297 (447)
                      ++++  |.|+|.  +.|.+++++      ++.+.+...      ...+.+-+.+...+++..+.++.+.++++   .++.
T Consensus       280 v~~g--Kgl~gG~~Pi~av~~~~------ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~l---~~~~  348 (466)
T PRK07030        280 LCLS--KALTGGYLPLAAVLTTD------TVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQDNV---IENN  348 (466)
T ss_pred             Eeee--hhccCCcccceEEEecH------HHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcCH---HHHH
Confidence            9986  998654  467777877      676665321      11111112355556666667777765443   5566


Q ss_pred             HHHHHHHHHHHHHC-CcEeeeC--CCCCeeEEecCCCCC-------CC---HHHHHHHHhhcCeEEccCCCCCCCCCCCC
Q 013217          298 VSNCRALASRLVEL-GYKLVSG--GSDNHLVLVDLRPMG-------ID---GARVEKILDMASITLNKNSVPGDKSALVP  364 (447)
Q Consensus       298 ~~~~~~l~~~L~~~-g~~~~~~--~~~~~~~~v~~~~~~-------~~---~~~~~~~L~~~gI~v~~~~~p~~~~~~~~  364 (447)
                      .+..++|.+.|++. ....+..  +. ..+.-+.+....       .+   ...+.+.+.++|+.+...          .
T Consensus       349 ~~~G~~l~~~L~~l~~~~~v~~vrG~-Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~----------g  417 (466)
T PRK07030        349 RALARRMAEATAHLADHPHVAEVRQT-GMILAIEMVQDKASKTPYPWQERRGLKVYQHALERGALLRPL----------G  417 (466)
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEeEec-eeEEEEEeccCccccccCcchhHHHHHHHHHHHHCCeEEEec----------C
Confidence            66667777777652 1211211  11 112223332110       01   135667778899998431          2


Q ss_pred             CeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          365 GGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       365 ~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      ..+|+.++...+    ++|++++.+++.++++..
T Consensus       418 ~~i~~~Ppl~it----~~eid~~~~~l~~al~~~  447 (466)
T PRK07030        418 SVVYFLPPYVIT----PEQIDFLAEVASEGIDIA  447 (466)
T ss_pred             CEEEEECCccCC----HHHHHHHHHHHHHHHHHH
Confidence            479998777776    999999999999999865

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=99.26  E-value=8.8e-10  Score=99.25  Aligned_cols=229  Identities=21%  Similarity=0.258  Sum_probs=141.4

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCC-CCcccC-CCccc-cccccccccc
Q 013217           64 IDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP-HGGHLS-HGFMT-PKRRVSGTSI  140 (447)
Q Consensus        64 ~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~-~~~~~~-~~~~~-~~~~~~~~g~  140 (447)
                      .|.+|    .-.++.||++.+.  +..|..|||.|+..++.++++|||+.|...-. |.-.-. .+... ....+.-.|.
T Consensus        67 RdtLe----~vyA~vf~aE~a~--VRpq~isGTHAI~~aLfg~LRpgDell~i~G~PYDTLeevIG~rg~~~gSL~dfgi  140 (416)
T COG4100          67 RDTLE----RVYAQVFGAEAAL--VRPQIISGTHAIACALFGILRPGDELLYITGSPYDTLEEVIGLRGEGQGSLKDFGI  140 (416)
T ss_pred             hhHHH----HHHHHHhccccce--eeeeeecchhHHHHHHHhccCCCCeEEEecCCcchhHHHHhccCCCCcccHHHhCc
Confidence            46676    4578999999753  46788999999999999999999999865311 100000 00000 0011222334


Q ss_pred             eeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCCCCC-----CCChHHHHHHHHHh--CCEEEEehhhhccccc
Q 013217          141 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG-ASAYPR-----DFDYPRMRQIADAV--GALLMMDMAHISGLVA  212 (447)
Q Consensus       141 ~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~-~~~~~~-----~~~~~~i~~ia~~~--g~~livD~a~~~g~~~  212 (447)
                      .|+.++  +. .++.+|++.+...+++ +||+|.+. +-.|..     ..+++++.++.++.  +++++||.++. -++-
T Consensus       141 ~Y~~v~--Lt-~~gkiD~~~v~~~i~~-~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYG-EFvE  215 (416)
T COG4100         141 KYKAVP--LT-ADGKIDIQAVKTAISD-RTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYG-EFVE  215 (416)
T ss_pred             ceeecc--cc-cCCcccHHHHHHhcCc-cceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccch-hhhh
Confidence            455555  43 3588999999999997 99999886 334443     33567777777775  68999999843 2221


Q ss_pred             cccCCCCCC-cccEEEeCCCcccCCC---CCceEEeecCCcchhhHHHHhhhc-cCCCCCCCCcHHHHHHHHHHHHHhcC
Q 013217          213 ASVVADPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVLGVELESAINNA-VFPGLQGGPHNHTIGGLAVCLKHAQS  287 (447)
Q Consensus       213 ~~~~~~~~~-~~Di~~~s~~K~l~Gp---~gG~i~~~~~~~~~~~~~~~i~~~-~~~~~~g~p~~~~~aal~~al~~~~~  287 (447)
                         ...|.. ++|++.+|.-|.-+|.   .||++..+.      ++.+..... ..|++ |...-.   .+ .+++++-+
T Consensus       216 ---~~EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~------~~ve~~~yRlTaPGI-G~e~Ga---t~-~~l~~myq  281 (416)
T COG4100         216 ---EKEPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKA------ELVEAAAYRLTAPGI-GREGGA---TL-YSLREMYQ  281 (416)
T ss_pred             ---ccCccccchhhhccceeeCCCCceeeccceeechH------HHHHhhceeeecCCc-cccccc---cH-HHHHHHHh
Confidence               123433 7999999999986553   468999988      676665432 34554 211111   11 12333321


Q ss_pred             hhH--HHHHHHHHHHHHHHHHHHHHCCcEeee
Q 013217          288 PEF--KVYQNKVVSNCRALASRLVELGYKLVS  317 (447)
Q Consensus       288 ~~~--~~~~~~~~~~~~~l~~~L~~~g~~~~~  317 (447)
                      --|  ...+.+..+-+...+..|.+.|+++.+
T Consensus       282 GlFlAPhvv~qa~Kga~fta~~le~lg~~~~P  313 (416)
T COG4100         282 GLFLAPHVVSQAVKGAHFTARFLEKLGFPVNP  313 (416)
T ss_pred             hhccchHHHHHHhhhhHHHHHHHHHcCCCCCC
Confidence            111  344556666667777778888987755

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=99.25  E-value=1.3e-09  Score=101.68  Aligned_cols=332  Identities=13%  Similarity=0.104  Sum_probs=190.7

Q ss_pred             CeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCC-cccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHH
Q 013217           22 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  100 (447)
Q Consensus        22 ~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~-~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~  100 (447)
                      ..+..+++.-+|++|++.....+.+-...|++=. +.+.+.++...++ .+++.++++++.+.+.- +.+...+++....
T Consensus         6 ~~nFsaGPa~lp~~vL~~a~~e~~~~~g~g~svme~SHRsk~~~~v~~-~a~~~lreLl~iPd~Y~-VlflqGGat~qf~   83 (365)
T COG1932           6 VYNFSAGPAALPPEVLQQAQKELLDWNGLGMSVMEISHRSKEFKNVLE-EAEKDLRELLNIPDDYK-VLFLQGGATGQFA   83 (365)
T ss_pred             CCCCCCCcccCCHHHHHHHHHHHhhhccCCcceeeeccccHHHHHHHH-HHHHHHHHHhCCCCCce-EEEEcCccHHHHH
Confidence            4566778888899999998887766333333221 2233444444444 67789999999987643 3444566668888


Q ss_pred             HHHHHhcCCCCE--EEEecCCCCcccCCCccccccccccccceeEEEeccc-CC-CCCCCCHHHHHHHhhhhCCcEEEEc
Q 013217          101 EVYTAILKPHDR--IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-DE-STGLVDYDMLEKTAILFRPKLIIAG  176 (447)
Q Consensus       101 ~~~~al~~pgd~--Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~-~~~~id~~~l~~~~~~~~~klii~~  176 (447)
                      ++.+.|+.++..  |.....+..+.         +.++..+...++..... .. -+..+|++...  +.+ +..-|.++
T Consensus        84 ~~p~nLl~~~~~~yv~~g~Ws~~a~---------~eA~~~~~~~~~~~~~~~~~~~~~iP~~~~~~--~~~-~~ayv~~~  151 (365)
T COG1932          84 MAPMNLLGKRGTDYVDTGAWSEFAI---------KEAKKVGKQPKLIDARIEEAGYGSIPDLSKWD--FSD-NDAYVHFC  151 (365)
T ss_pred             HHHHhhhcccCceeEeeeehhHhHH---------HHHHHhcccccccccceeccCccCCCChhhcc--cCC-CccEEEEe
Confidence            888898866543  54433221111         01111111011111110 00 11234554433  222 33335555


Q ss_pred             CCCCC-C-CC-ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchh
Q 013217          177 ASAYP-R-DF-DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGV  252 (447)
Q Consensus       177 ~~~~~-~-~~-~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~  252 (447)
                      +..+. + .+ +...+.   .  +.++++|++..+...     +.++...|++.++.+|.+ ||-| ++++.++      
T Consensus       152 ~NeTi~Gv~v~~~p~~~---~--~~~~v~D~SS~ilsr-----~iDvsk~dviyagaQKnl-GpaGltvvIvr~------  214 (365)
T COG1932         152 WNETISGVEVPELPDIG---S--DGLLVADASSAILSR-----PIDVSKYDVIYAGAQKNL-GPAGLTVVIVRP------  214 (365)
T ss_pred             cCCcccceEccCCCCCC---C--CceEEEecccHHhcC-----CCChhHcceEEEehhhcc-CccceEEEEEcH------
Confidence            32221 2 22 222221   1  278999987433322     222335799999999997 6777 9999998      


Q ss_pred             hHHHHhhhccC------------CCCCCCCcHHHHHHHHHHHHHhcChh-HHHHHHHHHHHHHHHHHHHHHCCcEee--e
Q 013217          253 ELESAINNAVF------------PGLQGGPHNHTIGGLAVCLKHAQSPE-FKVYQNKVVSNCRALASRLVELGYKLV--S  317 (447)
Q Consensus       253 ~~~~~i~~~~~------------~~~~g~p~~~~~aal~~al~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~g~~~~--~  317 (447)
                      ++.+++.....            ..+..||.+..+.-+...++.+...| .+...++-.++++.|.+.+.+.+|-..  .
T Consensus       215 ~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~s~fy~~~v~  294 (365)
T COG1932         215 DLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKSDFYRNLVA  294 (365)
T ss_pred             HHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCccccccc
Confidence            56555543211            23456788777777777888877554 588889999999999999988765321  1


Q ss_pred             CCCCCee-EEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          318 GGSDNHL-VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       318 ~~~~~~~-~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      +...+.+ +.+++....++ +.+...++++|...-++    +.   ..+++|++.-  ++  |..++++.|.++++...+
T Consensus       295 ~~~RS~mnV~f~~~~~~ld-~~fv~eae~~gl~~lkG----hr---~vgGmRasiy--nA--~~~e~veaL~~fm~~f~~  362 (365)
T COG1932         295 KANRSRMNVTFTLVDAELD-KGFVAEAEAAGLIYLKG----HR---SVGGLRASIY--NA--VPLEDVEALTDFMDWFEE  362 (365)
T ss_pred             hhhccceeEEEEcCcHHHH-HHHHHHHHHcCCceecc----cc---CCCceeeeee--cC--CCHHHHHHHHHHHHHHHH
Confidence            2222332 33455444443 33445555667665432    22   2457999864  32  568999999999987654

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=99.24  E-value=1e-09  Score=103.38  Aligned_cols=237  Identities=18%  Similarity=0.160  Sum_probs=147.5

Q ss_pred             HHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh---cCCC----------CEEEEecCCCCcccCCCccccc
Q 013217           66 ELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI---LKPH----------DRIMGLDLPHGGHLSHGFMTPK  132 (447)
Q Consensus        66 ~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al---~~pg----------d~Vl~~~~~~~~~~~~~~~~~~  132 (447)
                      ..|..+..+..++.|.+...  ..+....|+-+|.-++.+-   .-|+          +-|+-.+  ..+|+|.-     
T Consensus       141 lmE~~vl~km~~ivGw~~~~--DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtS--eesHYSi~-----  211 (510)
T KOG0629|consen  141 LMEEEVLAKMREIVGWEEGG--DGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTS--EESHYSIK-----  211 (510)
T ss_pred             eehHHHHHHHHHHhCCCCCC--CceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEec--ccchhhHH-----
Confidence            34556667788888988642  2455567776666555432   1122          3344332  34554421     


Q ss_pred             cccccccce-eEEEecccCCCCCCCCHHHHHHHhhhhC-----CcEEEEc--CCCCCCCCChHHHHHHHHHhCCEEEEeh
Q 013217          133 RRVSGTSIY-FESMPYRLDESTGLVDYDMLEKTAILFR-----PKLIIAG--ASAYPRDFDYPRMRQIADAVGALLMMDM  204 (447)
Q Consensus       133 ~~~~~~g~~-~~~~~~~~~~~~~~id~~~l~~~~~~~~-----~klii~~--~~~~~~~~~~~~i~~ia~~~g~~livD~  204 (447)
                      +...+.|.+ ..++.++.+ +.|.+++++||+.|.+-+     |-+|.++  ++.++-..|++.|+++|++|+.|++||+
T Consensus       212 kaAa~lg~gtd~c~~v~t~-e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmHvDA  290 (510)
T KOG0629|consen  212 KAAAFLGLGTDHCIKVKTD-ERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLWMHVDA  290 (510)
T ss_pred             HHHHHhccCCceeEEeccc-ccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEEEEeec
Confidence            233344433 234455566 678999999999886533     4444444  2334447799999999999999999999


Q ss_pred             hhhccccccccCCCCC---CcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhcc---------------CC-
Q 013217          205 AHISGLVAASVVADPF---KYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAV---------------FP-  264 (447)
Q Consensus       205 a~~~g~~~~~~~~~~~---~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~~---------------~~-  264 (447)
                      |+..|++....+...+   ..+|.++-+.||+++.|-- +.+.++.+     .+.++.+...               .. 
T Consensus       291 AwGGglLmS~k~R~kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~-----gll~~Cn~~~A~YLFq~dK~YdvS~DTg  365 (510)
T KOG0629|consen  291 AWGGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAPLQCSAFLTREE-----GLLQRCNQMSAIYLFQQDKFYDVSYDTG  365 (510)
T ss_pred             ccccccccChhhHhhccCccccCceeecHHHhhcCcchhhHHHHHHH-----HHHHhhcccchhhhhccCceeecccccc
Confidence            9877776554333222   3589999999999977755 77777764     3333322110               00 


Q ss_pred             --CCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeC
Q 013217          265 --GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSG  318 (447)
Q Consensus       265 --~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~  318 (447)
                        ..|.+-+.. +.-++.-++.-...||+..+++..+++++|.+.|++. |+..+..
T Consensus       366 dK~iQCGRh~D-~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~  421 (510)
T KOG0629|consen  366 DKAIQCGRHVD-VFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEMLFE  421 (510)
T ss_pred             cchhhcCcccc-HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccceehhc
Confidence              113332221 2335555554456789999999999999999999984 5555543

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.24  E-value=2.1e-08  Score=101.09  Aligned_cols=216  Identities=16%  Similarity=0.188  Sum_probs=123.1

Q ss_pred             CHHHHHHHhhhh-----CCcEEEEcCC-CCCCCC--C---hHHHHHHHHHhCCEEEEehhhhcccccccc-CCC-CCC-c
Q 013217          157 DYDMLEKTAILF-----RPKLIIAGAS-AYPRDF--D---YPRMRQIADAVGALLMMDMAHISGLVAASV-VAD-PFK-Y  222 (447)
Q Consensus       157 d~~~l~~~~~~~-----~~klii~~~~-~~~~~~--~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~~-~~~-~  222 (447)
                      +.+.+++++.+.     ++.+||+.+- ...+..  +   ++++.++|++||+++|+|+++ .|+--.+. ... -++ .
T Consensus       214 ~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~-tGfGRtG~~~a~e~~gv~  292 (464)
T PRK06938        214 NLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQ-SGFGRTGKMFAFEHAGII  292 (464)
T ss_pred             HHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc-cCCCcCcHHHHHHhcCCC
Confidence            367788877642     3567777632 122221  1   589999999999999999997 44422221 000 011 2


Q ss_pred             ccEEEeCCCcccCC-CCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHH
Q 013217          223 CDVVTTTTHKSLRG-PRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNC  301 (447)
Q Consensus       223 ~Di~~~s~~K~l~G-p~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~  301 (447)
                      .|+++.+  |.++| .+-|.+++++      ++ +.+......++.+ .|...+++..+.++.+.+++   ..++..+..
T Consensus       293 PDiv~~g--KglggG~PlsAv~~~~------~~-~~~~~~~~~~T~~-gnpla~Aaa~a~L~~l~~~~---l~~~~~~~G  359 (464)
T PRK06938        293 PDVVVLS--KAIGGSLPLAVVVYRE------WL-DTWQPGAHAGTFR-GNQMAMAAGSATLRYIKEHR---LAEHAAAMG  359 (464)
T ss_pred             CCEEEee--ccccCCCceEEEeehh------Hh-hccCCCCCCCCCC-cCHHHHHHHHHHHHHHHHhH---HHHHHHHHH
Confidence            6999986  98854 3347777776      43 4332222222222 24445555555677665443   455666666


Q ss_pred             HHHHHHHHHC--CcEeeeC--CCCCeeEEecCCCC-CC---------C---HHHHHHHHhhcCeEEccCCCCCCCCCCCC
Q 013217          302 RALASRLVEL--GYKLVSG--GSDNHLVLVDLRPM-GI---------D---GARVEKILDMASITLNKNSVPGDKSALVP  364 (447)
Q Consensus       302 ~~l~~~L~~~--g~~~~~~--~~~~~~~~v~~~~~-~~---------~---~~~~~~~L~~~gI~v~~~~~p~~~~~~~~  364 (447)
                      ++|.+.|++.  ...++..  +. ..+.-+.+... +.         +   ...+...|.++|+.+...    .  . ..
T Consensus       360 ~~l~~~L~~l~~~~~~i~~VrG~-Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~----g--~-~~  431 (464)
T PRK06938        360 ERLREHLRQLQRDYPQLGDVRGR-GLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRRGLILELG----G--R-HG  431 (464)
T ss_pred             HHHHHHHHHHHHhCCCeeeeecc-ceEEEEEeccCcccccccccCCccHHHHHHHHHHHHHCCeEEeec----C--C-CC
Confidence            6777766551  1222221  11 11222333211 00         1   234566777899988531    1  0 12


Q ss_pred             CeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          365 GGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       365 ~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      ..||+.++...|    ++|++++.+++.+++...
T Consensus       432 ~~l~~~Ppl~it----~~eid~~~~~l~~~l~~~  461 (464)
T PRK06938        432 SVVRFLPPLIIT----AEQIDEVAEIFAEAVAAA  461 (464)
T ss_pred             CEEEEECCCccC----HHHHHHHHHHHHHHHHHH
Confidence            479998887776    999999999999998753

>PRK07036 hypothetical protein; Provisional

Probab=99.23  E-value=2e-08  Score=101.34  Aligned_cols=213  Identities=18%  Similarity=0.183  Sum_probs=124.2

Q ss_pred             HHHHHHhhh---hCCcEEEEcCC-CCCC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccc-cCCC--CCC-cccE
Q 013217          159 DMLEKTAIL---FRPKLIIAGAS-AYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAAS-VVAD--PFK-YCDV  225 (447)
Q Consensus       159 ~~l~~~~~~---~~~klii~~~~-~~~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~-~~~~--~~~-~~Di  225 (447)
                      +.+++.+..   .++.+||+.+. ...+ ..+    +++++++|++||+++|+|+++ .|+--.+ ....  -++ ..|+
T Consensus       207 ~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~-tGfGRtG~~~~~~~~~gv~PDi  285 (466)
T PRK07036        207 DEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVV-TGFGRLGHFFASEAVFGIQPDI  285 (466)
T ss_pred             HHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeech-hCCCcCchhhhhhhhcCCCCCE
Confidence            345555542   24567777632 2223 233    799999999999999999997 3331111 1100  111 2688


Q ss_pred             EEeCCCcccCCC--CCceEEeecCCcchhhHHHHhhhc------cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHH
Q 013217          226 VTTTTHKSLRGP--RGGMIFFKKDPVLGVELESAINNA------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKV  297 (447)
Q Consensus       226 ~~~s~~K~l~Gp--~gG~i~~~~~~~~~~~~~~~i~~~------~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~  297 (447)
                      ++++  |.++|.  +.|.+++++      ++.+.+...      ...+.+-+.+...+++..+.++.+.+++   ..+++
T Consensus       286 vt~g--K~l~gG~~Pi~av~~~~------~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~~~---l~~~~  354 (466)
T PRK07036        286 ITFA--KGLTSGYQPLGAVIISE------RLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMEREG---LCEHV  354 (466)
T ss_pred             EEEc--cccccCccccEEEEEcH------HHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHhCC---HHHHH
Confidence            8876  998653  457777777      677665421      1122111235555666666777765444   46667


Q ss_pred             HHHHHHHHHHHHHC-CcEeeeC--CCCCeeEEecCCCCC-------CC---HHHHHHHHhhcCeEEccCCCCCCCCCCCC
Q 013217          298 VSNCRALASRLVEL-GYKLVSG--GSDNHLVLVDLRPMG-------ID---GARVEKILDMASITLNKNSVPGDKSALVP  364 (447)
Q Consensus       298 ~~~~~~l~~~L~~~-g~~~~~~--~~~~~~~~v~~~~~~-------~~---~~~~~~~L~~~gI~v~~~~~p~~~~~~~~  364 (447)
                      .+..++|.+.|++. ...++..  +.. .+..+.+....       .+   ...+...|.++||.+...          .
T Consensus       355 ~~~g~~l~~~L~~l~~~~~v~~vrG~G-l~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~----------~  423 (466)
T PRK07036        355 REVGPYFEERLASLRELPLVGDVRGDH-LMACVECVADKGSKALLPEDIAIGQRIDRHCQERGLLVRPL----------E  423 (466)
T ss_pred             HHHHHHHHHHHHHhccCCCEEEEEeec-eEEEEEEccCccccCCCCchhHHHHHHHHHHHHCCcEEeec----------C
Confidence            77777777777652 1222211  111 12223332110       01   234666778899998421          1


Q ss_pred             CeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          365 GGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       365 ~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      ..+|++++...|    ++|++++.+++.+++...
T Consensus       424 ~~~~l~Ppl~it----~~~id~~~~~l~~al~~~  453 (466)
T PRK07036        424 HLCVLSPPLIIT----RAQIDEIVAILRAAIEET  453 (466)
T ss_pred             CEEEEeCCCcCC----HHHHHHHHHHHHHHHHHH
Confidence            368998776666    999999999999999765

>PRK06148 hypothetical protein; Provisional

Probab=99.22  E-value=2.2e-08  Score=109.90  Aligned_cols=321  Identities=15%  Similarity=0.131  Sum_probs=170.5

Q ss_pred             CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh--cCCC
Q 013217           33 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKPH  110 (447)
Q Consensus        33 ~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al--~~pg  110 (447)
                      .|.|.+++.+.+..- .   ...+|.  .+    .+....+++.+++....+ .  ...++|||+|+.+++...  ....
T Consensus       640 hp~v~~Ai~~q~~~l-~---~~~~~~--~~----~~~~lAe~L~~~~p~~~~-~--v~f~nSGsEA~e~AlklAr~~tGr  706 (1013)
T PRK06148        640 HPRVVAAAARQAARL-N---TNTRYL--HD----AIVAYAERLTATLPDGLT-V--AFFVNSGSEANSLALRLARAHTGQ  706 (1013)
T ss_pred             CHHHHHHHHHHHhhc-C---CcCCcC--CH----HHHHHHHHHHHhCCCCcC-E--EEEeCCcHHHHHHHHHHHHHhcCC
Confidence            688888888776542 1   011111  11    111223566666643222 1  234589999999887644  2234


Q ss_pred             CEEEEecCCCCcccCCCcccccccccccc------------ceeEEEecccC-CCCCC-CC-------HHHHHHHhhh--
Q 013217          111 DRIMGLDLPHGGHLSHGFMTPKRRVSGTS------------IYFESMPYRLD-ESTGL-VD-------YDMLEKTAIL--  167 (447)
Q Consensus       111 d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~-~~~~~-id-------~~~l~~~~~~--  167 (447)
                      .+|++..-.|.|... +      .+..++            ..+..++.+.. ...+. .|       .+.+++.+..  
T Consensus       707 ~~ii~~~~~YHG~t~-~------a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  779 (1013)
T PRK06148        707 RDAIVLDHAYHGTTT-E------LIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMA  779 (1013)
T ss_pred             CeEEEEcCCccCCCc-c------hhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhh
Confidence            578887755444311 0      001111            00111111100 00011 11       1345555531  


Q ss_pred             ---hCCcEEEEcCC-CCCC-CCC----hHHHHHHHHHhCCEEEEehhhh-ccccccccCCC-CCC-cccEEEeCCCcccC
Q 013217          168 ---FRPKLIIAGAS-AYPR-DFD----YPRMRQIADAVGALLMMDMAHI-SGLVAASVVAD-PFK-YCDVVTTTTHKSLR  235 (447)
Q Consensus       168 ---~~~klii~~~~-~~~~-~~~----~~~i~~ia~~~g~~livD~a~~-~g~~~~~~~~~-~~~-~~Di~~~s~~K~l~  235 (447)
                         .++.+||+.+- ..++ ..+    ++++.++|+++|+++|+|++|. .|-+....... ..+ ..|+++.+  |.++
T Consensus       780 ~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt~g--K~lg  857 (1013)
T PRK06148        780 AKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTMG--KPIG  857 (1013)
T ss_pred             ccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcceeeec--cccc
Confidence               24567777621 2223 222    6899999999999999999983 33222111110 011 26998875  9985


Q ss_pred             C-CCCceEEeecCCcchhhHHHHhhhcc-CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC--
Q 013217          236 G-PRGGMIFFKKDPVLGVELESAINNAV-FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--  311 (447)
Q Consensus       236 G-p~gG~i~~~~~~~~~~~~~~~i~~~~-~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--  311 (447)
                      | .+.|.+++++      ++.+.+.... +.++.++ +...+++..+.++.+.+++   ..++..+..++|.+.|++.  
T Consensus       858 gG~Plgav~~~~------ei~~~~~~g~~~~~Tf~g-npla~aaa~a~L~~i~~e~---l~~~~~~~G~~l~~~L~~l~~  927 (1013)
T PRK06148        858 NGHPMGAVVTTR------EIADSFDNGMEYFNTFGG-NPVSCAIGLAVLDIIEDED---LQRNALEIGNYLLAGLRELQD  927 (1013)
T ss_pred             CCcceEEEEEcH------HHHhhccCCCccccCCCC-CHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHH
Confidence            4 3447788877      6777665432 2222332 4444555555677766544   4566677777777777652  


Q ss_pred             CcEeeeC--CCCCeeEEecCCCCC----CC---HHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHH
Q 013217          312 GYKLVSG--GSDNHLVLVDLRPMG----ID---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEK  382 (447)
Q Consensus       312 g~~~~~~--~~~~~~~~v~~~~~~----~~---~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~  382 (447)
                      ...++..  +... +.-+.+....    -+   ...+.+.|.++||.+...   +   + ....+|+.++...+    ++
T Consensus       928 ~~~~i~~VrG~Gl-~~gvel~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~---g---~-~~~vlr~~Ppl~it----~~  995 (1013)
T PRK06148        928 RFDIIGDVRGMGL-FLGIELVTDRKTKAPATAIARYVKNGARERGILIGTE---G---P-HDNVLKIRPPLIFS----RA  995 (1013)
T ss_pred             hCCCceEEeeece-EEEEEecCCccccCccHHHHHHHHHHHHhCCeEEecc---C---C-CCCEEEEeCCccCC----HH
Confidence            1222211  1111 2223332110    01   234667778899998532   1   1 13579999887777    99


Q ss_pred             HHHHHHHHHHHHHHH
Q 013217          383 EFVAIADFIHEGVEI  397 (447)
Q Consensus       383 di~~l~~~i~~~l~~  397 (447)
                      |++++.+++++++..
T Consensus       996 ~id~~l~~l~~~l~~ 1010 (1013)
T PRK06148        996 DADHLLEVLDDVLAA 1010 (1013)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999874

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=99.22  E-value=6.1e-09  Score=104.27  Aligned_cols=209  Identities=20%  Similarity=0.156  Sum_probs=115.7

Q ss_pred             HHHHHHHhhh--hCCcEEEEcCC-CCCCC-----CChHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEE
Q 013217          158 YDMLEKTAIL--FRPKLIIAGAS-AYPRD-----FDYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVV  226 (447)
Q Consensus       158 ~~~l~~~~~~--~~~klii~~~~-~~~~~-----~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~  226 (447)
                      ++++++.+..  .++.+|++.+- ..++.     --+++|.++|++||+++|+|++|. |+-..|.. . .-++ ..|++
T Consensus       205 l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t-G~GrtG~~~a~~~~gv~PDi~  283 (431)
T TIGR03251       205 LRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQT-GVGLTGTAWAYQQLGVQPDIV  283 (431)
T ss_pred             HHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchh-ccCccchHHHHHhcCCCCCEE
Confidence            4555556643  25677777622 22232     246899999999999999999985 44323211 0 0011 36898


Q ss_pred             EeCCCcccCCCCCceEEeecCCcchhhHHHH-hh-hccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHH
Q 013217          227 TTTTHKSLRGPRGGMIFFKKDPVLGVELESA-IN-NAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL  304 (447)
Q Consensus       227 ~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~-i~-~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l  304 (447)
                      +++  |.+  |.+|++..++-    .+.... .. .....++.+ .+...+++..++++.+.++++   .+++.+..++|
T Consensus       284 ~~g--K~~--~~~g~~~~~~i----~~~~~~~~~~~~~~~~T~~-gnpl~~aaa~a~L~~l~~~~l---~~~~~~~g~~l  351 (431)
T TIGR03251       284 AFG--KKT--QVCGIMAGRRV----DEVADNVFAVPSRLNSTWG-GNLVDMVRATRILEIIEEERL---VDNARVQGAHL  351 (431)
T ss_pred             Eec--ccC--ccceEEecchH----HHhhhhcccCccccCCCCC-CCHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHH
Confidence            765  765  55566654430    011111 11 111112222 344555555567777655443   44555666666


Q ss_pred             HHHHHHC--CcE-eeeCCC-CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCC
Q 013217          305 ASRLVEL--GYK-LVSGGS-DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFS  380 (447)
Q Consensus       305 ~~~L~~~--g~~-~~~~~~-~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~  380 (447)
                      .+.|++.  ... ++.... ...+..+.+.... ....+.+.|.++||.+...         ....+|+.++..++    
T Consensus       352 ~~~L~~l~~~~~~~i~~vrg~G~~~~i~~~~~~-~~~~~~~~l~~~Gvl~~~~---------g~~~lr~~P~l~~t----  417 (431)
T TIGR03251       352 LARLHELAAEFPHLVSNPRGRGLMCAFDLPSTA-DRDEVIRQLYREGVLLLGC---------GERSIRFRPPLTVT----  417 (431)
T ss_pred             HHHHHHHHHhCccceecccccceeEEEEeCCHH-HHHHHHHHHHhCCeEEecC---------CCCeEEEECCccCC----
Confidence            6666541  122 222111 1223334443211 2345777888999998421         12479999988887    


Q ss_pred             HHHHHHHHHHHHH
Q 013217          381 EKEFVAIADFIHE  393 (447)
Q Consensus       381 ~~di~~l~~~i~~  393 (447)
                      ++|++++++++.+
T Consensus       418 ~~eid~~l~~l~~  430 (431)
T TIGR03251       418 REEIDAAIDAIRR  430 (431)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998875

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.22  E-value=2.4e-08  Score=91.30  Aligned_cols=314  Identities=17%  Similarity=0.188  Sum_probs=166.8

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc----
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  107 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~----  107 (447)
                      ..|.+++++.+....-+   ..++-+|.  ....+++    +.+.++||.+.     .+...+|.+|+..++.-..    
T Consensus        76 chpki~~aLqeq~~kLt---lssrafYn--d~~~~f~----~~vt~lf~~~k-----vlpmnTGaEa~Eta~KLaR~wgy  141 (427)
T KOG1402|consen   76 CHPKIIKALQEQADKLT---LSSRAFYN--DVLGEFA----EYVTKLFGYDK-----VLPMNTGAEAVETACKLARKWGY  141 (427)
T ss_pred             CCHHHHHHHHHHHhHhh---hhhHHHhh--hhHHHHH----HHHHHhcCcce-----eeecccchhHHHHHHHHHHHHHH
Confidence            36788888877665322   11222221  1223444    57889999885     3446788899988765332    


Q ss_pred             --C--CCCE-EEEecC-CC-CcccCCCccccccccccccce-----e-EEEecccCCCCCCCCHHHHHHHhhhhCCcEEE
Q 013217          108 --K--PHDR-IMGLDL-PH-GGHLSHGFMTPKRRVSGTSIY-----F-ESMPYRLDESTGLVDYDMLEKTAILFRPKLII  174 (447)
Q Consensus       108 --~--pgd~-Vl~~~~-~~-~~~~~~~~~~~~~~~~~~g~~-----~-~~~~~~~~~~~~~id~~~l~~~~~~~~~klii  174 (447)
                        +  |.|+ +++... .+ |-.+        ..+.+++..     | -+.|..++ .-..-|.++|+.+++..+...++
T Consensus       142 ~~K~ip~nka~il~~~~nFhGrT~--------~ais~s~d~ds~~~fgp~~P~~~~-~v~Y~d~eale~~l~~~~vaaFi  212 (427)
T KOG1402|consen  142 RKKNIPKNKAKILSAENNFHGRTL--------GAISLSTDPDSWDGFGPFLPGVVD-KVPYGDAEALEVALKSPNVAAFI  212 (427)
T ss_pred             hhccCCccceeEEEecccccCcee--------eeEEecCCcchhhccCCCCCCcce-eeccCCHHHHHHHhcCCCeeEEE
Confidence              2  5444 333221 11 1111        011222110     0 00110000 00123778898888775556666


Q ss_pred             EcCCC-CCC-C----CChHHHHHHHHHhCCEEEEehhhhccccccccC-CCCCC--cccEEEeCCCcccCCCC--CceEE
Q 013217          175 AGASA-YPR-D----FDYPRMRQIADAVGALLMMDMAHISGLVAASVV-ADPFK--YCDVVTTTTHKSLRGPR--GGMIF  243 (447)
Q Consensus       175 ~~~~~-~~~-~----~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~~~~~--~~Di~~~s~~K~l~Gp~--gG~i~  243 (447)
                      +.+-. -.+ .    -=+++.+++|.+|++++|.|+.| .|+--.|.. .....  ..|++...  |.|.|.-  .+.++
T Consensus       213 vEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQ-TGl~RTGk~la~d~env~PDivilg--KalSGG~~Pvsavl  289 (427)
T KOG1402|consen  213 VEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQ-TGLARTGKLLACDYENVRPDIVILG--KALSGGVYPVSAVL  289 (427)
T ss_pred             eeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhh-hcccccCcEEEeehhhcCCCeEEEe--ccccCCeeeeEEEE
Confidence            54211 112 1    22789999999999999999998 554433321 10001  24888876  8886532  24555


Q ss_pred             eecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCC--c----Eeee
Q 013217          244 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG--Y----KLVS  317 (447)
Q Consensus       244 ~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~----~~~~  317 (447)
                      +.+      +++..+.+.....++|+ |+...+...++++.+.++   .+.++....-..|+.+|.+..  +    ..+.
T Consensus       290 ~~~------~im~~~~pgeHgsTygg-NpLg~~vaiAalevi~ee---kL~era~~lG~~l~~~L~~l~~~~p~~v~~VR  359 (427)
T KOG1402|consen  290 ADD------DIMLNIKPGEHGSTYGG-NPLGCAVAIAALEVIVEE---KLVERAAKLGEILRDQLNKLQKKFPHVVKEVR  359 (427)
T ss_pred             ecH------HHHhccCCCccccccCC-ChHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhccccccchhheee
Confidence            555      56655555443333333 333333333466665533   345555555666777777632  2    1121


Q ss_pred             CCCCCeeEEecCCCC---CCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          318 GGSDNHLVLVDLRPM---GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       318 ~~~~~~~~~v~~~~~---~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                      + . ..+..+.+.+.   +.+.-++.-.|.++|+...    |.+     ...||+..|..-+    ++|+++-+++|.++
T Consensus       360 G-r-Gl~~ai~i~~~~~~~~~aw~~cl~lk~~g~LAk----ptH-----~~IiRfaPPL~I~----e~dl~eg~e~i~k~  424 (427)
T KOG1402|consen  360 G-R-GLLNAIVINPSKTSGQDAWDVCLALKENGLLAK----PTH-----GNIIRFAPPLVIS----EEDLREGIEAIEKT  424 (427)
T ss_pred             c-c-ceEEEEEeccccccchhHHHHHHcccccccccC----CCC-----CCeEEecCCcccC----HHHHHHHHHHHHHH
Confidence            1 1 12222223222   2333445556677888763    222     3489999886555    99999999999887


Q ss_pred             HH
Q 013217          395 VE  396 (447)
Q Consensus       395 l~  396 (447)
                      +.
T Consensus       425 i~  426 (427)
T KOG1402|consen  425 IA  426 (427)
T ss_pred             hc
Confidence            63

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=99.21  E-value=3.1e-08  Score=96.61  Aligned_cols=215  Identities=18%  Similarity=0.161  Sum_probs=128.1

Q ss_pred             HHHHHHHhhhhCC---cEEEEcCCCC--CC-CC-C---hHHHHHHHHHhCCEEEEehhhhccccccccC-CCC-CC-ccc
Q 013217          158 YDMLEKTAILFRP---KLIIAGASAY--PR-DF-D---YPRMRQIADAVGALLMMDMAHISGLVAASVV-ADP-FK-YCD  224 (447)
Q Consensus       158 ~~~l~~~~~~~~~---klii~~~~~~--~~-~~-~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~~~-~~-~~D  224 (447)
                      .++|++++.++.|   .++|+.+-.-  ++ .. +   ++++++||++||+++|+|++ ..|+--.|.. ... .. ..|
T Consensus       200 a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV-~tGFGRTG~~FA~e~~gi~PD  278 (449)
T COG0161         200 ADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEV-ATGFGRTGKMFACEHAGIVPD  278 (449)
T ss_pred             HHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecc-eeCCCcCchhhhhhhcCCCCC
Confidence            6678888877543   4556542211  22 22 1   69999999999999999998 4554433311 100 00 248


Q ss_pred             EEEeCCCcccCCCC--CceEEeecCCcchhhHHHHhhhc----cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHH
Q 013217          225 VVTTTTHKSLRGPR--GGMIFFKKDPVLGVELESAINNA----VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVV  298 (447)
Q Consensus       225 i~~~s~~K~l~Gp~--gG~i~~~~~~~~~~~~~~~i~~~----~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~  298 (447)
                      +++.+  |.|.|.-  -|.+++++      ++.+.+...    .+.+.+-+-|+...|+..+.++.+.+++   +.++..
T Consensus       279 i~~~a--KGLT~GY~Pl~a~l~~~------~I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i~e~e~---l~~~~~  347 (449)
T COG0161         279 ILCLA--KGLTGGYLPLSAVLTSD------RIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDILEEED---LLERVA  347 (449)
T ss_pred             eeeec--ccccccchhhHhHhhhH------HHHHHHhcccCCeeccCCccccCHHHHHHHHHHHHHHHhcC---HHHHHH
Confidence            98877  9886532  25556666      566655432    2333322334444444334566555444   467777


Q ss_pred             HHHHHHHHHHHH--CCcEeeeCCC-CCeeEEecCCC-CC-C------CHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeE
Q 013217          299 SNCRALASRLVE--LGYKLVSGGS-DNHLVLVDLRP-MG-I------DGARVEKILDMASITLNKNSVPGDKSALVPGGI  367 (447)
Q Consensus       299 ~~~~~l~~~L~~--~g~~~~~~~~-~~~~~~v~~~~-~~-~------~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~i  367 (447)
                      +...+|.+.|++  .+.+.+.+-. ...+.-+.+.. .+ .      -+..+.+.+.++|+.+++.          ...+
T Consensus       348 ~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl~iRp~----------g~~i  417 (449)
T COG0161         348 EIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLIRPL----------GDVI  417 (449)
T ss_pred             HHHHHHHHHHHHhcccCCcEEEeeccceEEEEEEecccccccchhhhHHHHHHHHHHHCCeEEeec----------CCEE
Confidence            888888888886  2222333211 11222233321 11 1      1456778888999999742          2256


Q ss_pred             EEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          368 RIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       368 Rig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      =+++|.+.|    ++|++++.+.+.++++..
T Consensus       418 ~~~PPliit----~~eid~l~~~l~~al~~~  444 (449)
T COG0161         418 YLMPPLIIT----REEIDELVDALREALDET  444 (449)
T ss_pred             EEcCCccCC----HHHHHHHHHHHHHHHHHH
Confidence            677777777    999999999999999854

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=99.20  E-value=1.2e-08  Score=102.10  Aligned_cols=209  Identities=13%  Similarity=0.115  Sum_probs=119.0

Q ss_pred             CHHHHHHHhhhh--CCcEEEEcCC-CCCC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-C---CCCC-cc
Q 013217          157 DYDMLEKTAILF--RPKLIIAGAS-AYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A---DPFK-YC  223 (447)
Q Consensus       157 d~~~l~~~~~~~--~~klii~~~~-~~~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~---~~~~-~~  223 (447)
                      +++++++++.++  ++.+||+.+- ...+ ..+    +++++++|++||+++|+|++| .|+-..|.. .   ..+. ..
T Consensus       237 ~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~-tGfGrtG~~fa~e~~gv~~~P  315 (464)
T TIGR00699       237 CLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQ-TGVGATGKFWAHEHWNLDDPP  315 (464)
T ss_pred             HHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeee-eCCCCCcchhHHHhcCCCCCC
Confidence            456777777542  4566777632 2223 344    799999999999999999998 554332211 0   1111 26


Q ss_pred             cEEEeCCCcccCCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHH
Q 013217          224 DVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRA  303 (447)
Q Consensus       224 Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~  303 (447)
                      |+++++  |.+++  ||+++.++      .+ ..... .+.+...+.+...+++..++++.+.++++   .++..+..++
T Consensus       316 Di~t~g--K~lg~--gG~~~~~~------~~-~~~~~-~~~~~T~~gnp~~~aaa~a~L~~l~~~~l---~~~~~~~g~~  380 (464)
T TIGR00699       316 DMVTFS--KKFQT--AGYFFHDP------AF-RPNKP-YRQFNTWMGDPSRALILREIIQEIKRKDL---LENVAHVGDY  380 (464)
T ss_pred             CEEEeh--hhhcc--CCccccch------hc-cCCCC-cccccCCCCCHHHHHHHHHHHHHHHhcCH---HHHHHHHHHH
Confidence            887775  98742  24443332      22 11011 11111223345555555557777665443   4555555667


Q ss_pred             HHHHHHHCC--cE-eeeC--CC-CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccC
Q 013217          304 LASRLVELG--YK-LVSG--GS-DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTR  377 (447)
Q Consensus       304 l~~~L~~~g--~~-~~~~--~~-~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~  377 (447)
                      |.+.|++..  +. ++..  +. ...++-+.+.... ....+.+.+.++||.+...         ....||+.++...+ 
T Consensus       381 l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~~~~-~~~~i~~~~~~~Gvl~~~~---------g~~~ir~~Ppl~it-  449 (464)
T TIGR00699       381 LYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTPDEA-KRDKLLKKARNNGVNIGGC---------GVKAIRLRPMLVFQ-  449 (464)
T ss_pred             HHHHHHHHHHhCCCceeeecccCeEEEEEEecCCHH-HHHHHHHHHHHCCcEEecC---------CCCeEEEeCCCCCC-
Confidence            777776521  32 2221  11 1223334443211 1345777778899998531         12479999887777 


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 013217          378 GFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       378 g~~~~di~~l~~~i~~~l  395 (447)
                         ++|++.+.++|.+++
T Consensus       450 ---~~eid~~~~~l~~~~  464 (464)
T TIGR00699       450 ---KHHADIFLEIISKII  464 (464)
T ss_pred             ---HHHHHHHHHHHHHhC
Confidence               999999999998764

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.19  E-value=1.2e-07  Score=95.67  Aligned_cols=203  Identities=17%  Similarity=0.211  Sum_probs=114.2

Q ss_pred             CcEEEEcCC-CCCC--CCC---hHHHHHHHHHhCCEEEEehhhhcccccccc-CCC-CCC-cccEEEeCCCcccCC-CCC
Q 013217          170 PKLIIAGAS-AYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VAD-PFK-YCDVVTTTTHKSLRG-PRG  239 (447)
Q Consensus       170 ~klii~~~~-~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~~-~~~-~~Di~~~s~~K~l~G-p~g  239 (447)
                      +..||+.+- ...+  ..+   ++++.++|++||+++|+|+++ .|+--.+. ... -.+ ..|+++++  |.++| .+.
T Consensus       226 iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~-tGfGRtG~~~a~~~~gv~PDivt~g--K~l~gG~Pi  302 (459)
T PRK06931        226 PAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQ-AGFARTGKMFAFEHAGIEPDIIVMS--KAVGGGLPL  302 (459)
T ss_pred             eEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecch-hcCCcCchHHHhhhcCCCCCEEEec--ccccCCcce
Confidence            566777521 2222  112   689999999999999999997 44422221 100 011 26999886  98854 334


Q ss_pred             ceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC--CcEeee
Q 013217          240 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVS  317 (447)
Q Consensus       240 G~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~  317 (447)
                      |.+..++      ++ +.+......+++ +.|...+++..+.++.+.++++   .++..+..++|.+.|++.  ...++.
T Consensus       303 ~av~~~~------~~-~~~~~~~~~~T~-~gnpla~aaala~L~~l~~~~l---~~~~~~~G~~l~~~L~~l~~~~~~i~  371 (459)
T PRK06931        303 AVLGIKK------EF-DAWQPGGHTGTF-RGNQLAMATGLTTLKILKEENL---AQNAAERGEWLKAQLAELQKRYPCIG  371 (459)
T ss_pred             eeeeeHH------HH-hhccCCCCCCCC-CCCHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence            6666665      43 444322222222 2344555555556776655443   455666666666666551  122222


Q ss_pred             C--CCCCeeEEecCCCC-C---------CC---HHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHH
Q 013217          318 G--GSDNHLVLVDLRPM-G---------ID---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEK  382 (447)
Q Consensus       318 ~--~~~~~~~~v~~~~~-~---------~~---~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~  382 (447)
                      .  +..- +.-+.+... .         .+   ...+...|.++||.+...    .   .....+|+.++...+    ++
T Consensus       372 ~vrG~Gl-m~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~----~---~~~~~l~~~Ppl~it----~~  439 (459)
T PRK06931        372 NVRGRGL-MIGIEIVDERQPADAMGSYPADGELAAAIQKACFENGLLLERG----G---RNGNVVRLLPPLLIT----QA  439 (459)
T ss_pred             eEecCce-EEEEEEccCcccccccccCCccHHHHHHHHHHHHHCCcEEeec----C---CCCCEEEEECCCCcC----HH
Confidence            1  1111 222233211 0         01   234566677899998531    1   113479998887777    99


Q ss_pred             HHHHHHHHHHHHHHHH
Q 013217          383 EFVAIADFIHEGVEIT  398 (447)
Q Consensus       383 di~~l~~~i~~~l~~~  398 (447)
                      |++++.+++.+++...
T Consensus       440 eid~~~~~l~~~l~~~  455 (459)
T PRK06931        440 ECEEFIDRFEQALLAA  455 (459)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998753

>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]

Probab=99.19  E-value=1.8e-09  Score=97.57  Aligned_cols=340  Identities=14%  Similarity=0.143  Sum_probs=196.3

Q ss_pred             CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCC
Q 013217           31 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH  110 (447)
Q Consensus        31 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pg  110 (447)
                      .+|+.+.+.+...+.. |+.--...++.|..+++. ..+-+...++.+.|+..+|+.+   +.|-|.-+..++.++.+|-
T Consensus        78 LmPK~t~~~~~~eLDk-Wak~av~gH~~GkvPW~~-~De~il~l~~~iVGA~e~Evav---mNsLTvNlh~Ll~sFyKPT  152 (465)
T KOG3846|consen   78 LMPKSTRNSINAELDK-WAKCAVEGHFKGKVPWVS-IDEPILPLLAPIVGAQENEVAV---MNSLTVNLHSLLISFYKPT  152 (465)
T ss_pred             cCchhhHhHHHHHHHH-HHhhhhhcccccccceee-cchhhhhhhhhhccCCchhhhh---HhhhhhHHHHHHHHhcCCc
Confidence            3588888888777653 432111111122222221 2223446788999999776522   2333333344556677765


Q ss_pred             C---EEEEecCCCCcccCCCccccccccccccceeEEEecccCCC--CCCCCHHHHHHHhhhhC--CcEEEEcCCC-CCC
Q 013217          111 D---RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES--TGLVDYDMLEKTAILFR--PKLIIAGASA-YPR  182 (447)
Q Consensus       111 d---~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~id~~~l~~~~~~~~--~klii~~~~~-~~~  182 (447)
                      .   +|+.-.-.++   +-.|. ..+.+++.|...+-...-+.|.  ...+..+++.+.|+...  ..+|+++... |++
T Consensus       153 ekR~KILlE~kaFP---SDhYA-iesQ~~lhG~~~e~sm~~iePREGEetlRteDILd~IEkngDeiA~v~fSGvqyYTG  228 (465)
T KOG3846|consen  153 EKRFKILLEKKAFP---SDHYA-IESQCKLHGISPENSMIQIEPREGEETLRTEDILDTIEKNGDEIALVCFSGVQYYTG  228 (465)
T ss_pred             chhhhhhhccCCCC---chHHH-HHhhhhhcCCChHHheEEecccccccchhHHHHHHHHHhcCCeEEEEEeecceeecc
Confidence            4   4664333333   22222 1224455554332222223332  34678888888887632  3456666554 444


Q ss_pred             -CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccC-CCCC-ceEEeecCCc---------c
Q 013217          183 -DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLR-GPRG-GMIFFKKDPV---------L  250 (447)
Q Consensus       183 -~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~-Gp~g-G~i~~~~~~~---------~  250 (447)
                       .+|+.+|...-+..|+++=.|-||+.|-++..++.+.   +|+.+-...|+++ |+.| |-+++.+...         .
T Consensus       229 Q~Fdi~aIT~Agq~kgc~VGfDLAHAvgNVpL~LHdWg---VDFACWCSYKYlnaGaGgIgGlFvHekh~~~~~prl~GW  305 (465)
T KOG3846|consen  229 QYFDIGAITFAGQFKGCLVGFDLAHAVGNVPLQLHDWG---VDFACWCSYKYLNAGAGGIGGLFVHEKHTKESLPRLAGW  305 (465)
T ss_pred             cccchhhhhhcccCCCcEechhhhhhhcCCceEEeecC---CceEEEeeecccccCCCccceeeeehhhhcchhhHHhhh
Confidence             7899999966666799999999999998877666664   8999999999984 6666 6666665421         0


Q ss_pred             h-hhHHHH--hhh------ccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CC--------
Q 013217          251 G-VELESA--INN------AVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LG--------  312 (447)
Q Consensus       251 ~-~~~~~~--i~~------~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g--------  312 (447)
                      | -+...+  ++.      ......++.|..+..+|+..+++...+...++.+++-.-...+|..-++. .|        
T Consensus       306 wgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~q~~~~~lRkrS~lLTgYleyL~k~~~g~~~~~rt~  385 (465)
T KOG3846|consen  306 WGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFAQFNINELRKRSLLLTGYLEYLLKASKGYKHPLRTE  385 (465)
T ss_pred             ccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHHHhhHHHHhhhhhhHHhHHHHHHHHhcccCchhhhc
Confidence            0 011111  111      11122367888888999988888766544555555555555554443332 22        


Q ss_pred             ---cEeeeCC-C--CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEe-cCccccCCCCHHHHH
Q 013217          313 ---YKLVSGG-S--DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIG-SPAMTTRGFSEKEFV  385 (447)
Q Consensus       313 ---~~~~~~~-~--~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig-~~~~~~~g~~~~di~  385 (447)
                         +.++++. +  ......+.+..   +...+.+.|.++|+.+.+.         .+.+||+. .+.+++    -.|+.
T Consensus       386 Kl~~~IiTP~~~~erGcQLsl~Fss---p~~~vfqeL~krGv~~DkR---------~PNvIRvAPvpLYN~----f~Dvy  449 (465)
T KOG3846|consen  386 KLFFTIITPTSTDERGCQLSLYFSS---PTPKVFQELHKRGVIGDKR---------RPNVIRVAPVPLYNT----FSDVY  449 (465)
T ss_pred             ceeEEEeCCcccccccceEEEEeCC---CchHHHHHHHHcCeecccc---------CCCceEeecchhhcc----HHHHH
Confidence               3333331 1  11122222322   2367888999999998754         35689997 456777    89999


Q ss_pred             HHHHHHHHHHHHH
Q 013217          386 AIADFIHEGVEIT  398 (447)
Q Consensus       386 ~l~~~i~~~l~~~  398 (447)
                      ++..++.+++...
T Consensus       450 ~f~n~L~e~~d~~  462 (465)
T KOG3846|consen  450 IFVNALNEAMDKL  462 (465)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999988887643

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=99.18  E-value=9.2e-10  Score=104.64  Aligned_cols=297  Identities=16%  Similarity=0.149  Sum_probs=160.2

Q ss_pred             HHHHHcCCCCCccceeeecCCcH-HHHHHHHHHhc--CCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC
Q 013217           74 RALAAFNLDENKWGVNVQPLSGS-PANFEVYTAIL--KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD  150 (447)
Q Consensus        74 ~~~~~~g~~~~~~~~~v~~~sGs-~a~~~~~~al~--~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  150 (447)
                      .+-+..|+....- +.+. .-.| .++...+.++-  ..++.|+.+..+|-+.+        +.+...|....+++-...
T Consensus        64 d~~~~~G~~~~~~-~~~v-P~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~--------kai~~AGl~~~vV~~~~~  133 (389)
T PF05889_consen   64 DALRLAGLRSVKS-CFVV-PMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCF--------KAIERAGLEPVVVENVLE  133 (389)
T ss_dssp             HHHHHTTHTTHCE-EEEE-SS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHH--------HHHHHTT-EEEEE-EEEE
T ss_pred             HHHHHcCCccccc-eEEE-ecccccHHHHHHHHHhcccCCceEEEeeccccchH--------HHHHhcCCeEEEeeccCC
Confidence            3445678773221 2232 3333 45555566663  56788888776654322        345566665555554444


Q ss_pred             CCCCCCCHHHHHHHhhhhC--CcEEEEc-CC-CCCCCCC-hHHHHHHHHHhCCEEEEehhhhcccccccc---C--CCCC
Q 013217          151 ESTGLVDYDMLEKTAILFR--PKLIIAG-AS-AYPRDFD-YPRMRQIADAVGALLMMDMAHISGLVAASV---V--ADPF  220 (447)
Q Consensus       151 ~~~~~id~~~l~~~~~~~~--~klii~~-~~-~~~~~~~-~~~i~~ia~~~g~~livD~a~~~g~~~~~~---~--~~~~  220 (447)
                      ++.-..|.+.+++.+++..  +.+.+++ .+ .+|+..| +++|+++|+++|++.++..|++.  -....   .  ....
T Consensus       134 ~d~l~td~~~ie~~i~~~G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgv--Q~~~~~~~i~~a~~~  211 (389)
T PF05889_consen  134 GDELITDLEAIEAKIEELGADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGV--QSSKCMHLIQQAWRV  211 (389)
T ss_dssp             TTEEEEHHHHHHHHHHHHCGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTT--T-HHHHHHHHHHHHH
T ss_pred             CCeeeccHHHHHHHHHHhCCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhh--hHHHHHHHHHHHHhc
Confidence            4444678899999887643  3455555 33 4566555 99999999999999999998654  00000   0  0001


Q ss_pred             CcccEEEeCCCcccCCCCCceEEeecCCcchhhHHHHhhhccCCCC-CCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHH
Q 013217          221 KYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGL-QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVS  299 (447)
Q Consensus       221 ~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~-~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~  299 (447)
                      +..|+++-|+-|.|-.|-||.++....    +.....+... +|+. ..+|.....    .-+..+...+|...+....+
T Consensus       212 GRvda~vqS~dkNF~VPvGgai~As~~----~~~i~~vs~~-YpGRas~sp~ld~~----itLl~LG~~g~~~ll~~r~~  282 (389)
T PF05889_consen  212 GRVDAFVQSTDKNFMVPVGGAIMASFD----PSGILAVSKE-YPGRASASPSLDLF----ITLLSLGCTGYGALLKERKA  282 (389)
T ss_dssp             STCSEEEEEHHHHHCEESSHEEEEESS----HHHHHHHHHT-SHSHBTSHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcceeeeecCCCEEecCCCcEEEecC----HHHHHHHHHH-hhhhhhcccchHHH----HHHHHHhhhHHHHHHHHHHH
Confidence            136889999999998888855554432    1566666553 3443 223332221    12223333456667777777


Q ss_pred             HHHHHHHHHHH----CCcEeeeCCCCCeeEE-ecCCCCC----CCHHHHHHHHhhcCeEEccCCCCCCC------CCCCC
Q 013217          300 NCRALASRLVE----LGYKLVSGGSDNHLVL-VDLRPMG----IDGARVEKILDMASITLNKNSVPGDK------SALVP  364 (447)
Q Consensus       300 ~~~~l~~~L~~----~g~~~~~~~~~~~~~~-v~~~~~~----~~~~~~~~~L~~~gI~v~~~~~p~~~------~~~~~  364 (447)
                      .-.++.++|++    .|-++.. -+.||..+ +++....    -+..++...|..+||.-.....|...      +.+..
T Consensus       283 ~f~~l~erl~~~aee~~e~ll~-~p~N~is~a~tl~~l~~~~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~yp~  361 (389)
T PF05889_consen  283 SFPYLKERLKKWAEEVGERLLE-TPRNHISMAFTLDTLYEISQKDGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNYPC  361 (389)
T ss_dssp             HHHHHHHHHHHHHHHTTEEBSS-STT-SSEEEEE-TTCCTCCSSHHHHHHHHHHHTTEESSEEEETSSCEEETTSS--SS
T ss_pred             HHHHHHHHHHHHHHHhhhhhcC-CCCCCeeEEEECccchhhccchhhhHHHHHHhCCcccceeeccCCCcccccCCCCch
Confidence            77777777755    4544332 23455432 3333221    12457788888888763322122211      11222


Q ss_pred             CeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          365 GGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       365 ~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      .++-+.    .+.|+++||++.+++.|+++++
T Consensus       362 ~Ylt~A----saiG~~~eevd~~v~rL~k~i~  389 (389)
T PF05889_consen  362 PYLTAA----SAIGMTREEVDYFVKRLDKIIK  389 (389)
T ss_dssp             SEEEEE----E-TT--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHH----HHhCCCHHHHHHHHHHHHHHhC
Confidence            455552    3468889999999999999874

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=99.13  E-value=7.1e-08  Score=90.80  Aligned_cols=343  Identities=17%  Similarity=0.122  Sum_probs=159.9

Q ss_pred             cCeeEecCCCCCCHHHHHHHhhhhh---ccC-CCCCCCCccc-CchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCc
Q 013217           21 KSLELIASENFTSRAVMEAVGSCLT---NKY-SEGLPGKRYY-GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG   95 (447)
Q Consensus        21 ~~i~l~~~~n~~~~~v~~a~~~~~~---~~~-~~g~~~~~~~-~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sG   95 (447)
                      ..|+|.-+-.-.+++=++.-...+.   ..+ .......|.| |+...+.+..    +..++++|++++++  .|. .+.
T Consensus        23 ~~L~LdmtRGKPs~eQLdLS~~lL~~~~~~~~~~dG~D~RNY~G~l~Gipe~r----~l~a~llgv~~~~v--iv~-gNS   95 (425)
T PF12897_consen   23 KGLKLDMTRGKPSPEQLDLSNPLLDLPGSSDYLADGTDCRNYPGGLDGIPEAR----ELFAELLGVPPENV--IVG-GNS   95 (425)
T ss_dssp             TT--EES---S--HHHHHGGGGGGGSSTTCCBECTTEBTTSS-S-SS--HHHH----HHHHHHHTS-GGGE--EE--SS-
T ss_pred             cCCCcccCCCCCCHHHHhhhHHHhcCCCCccccCCCccccCCCCccCChHHHH----HHHHHHhCCCHHHE--EEe-ccc
Confidence            5566665555556665554333332   111 1111234777 7766666654    68899999998754  222 222


Q ss_pred             H-HHHHHHH-HHh----cC--------CCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHH
Q 013217           96 S-PANFEVY-TAI----LK--------PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDML  161 (447)
Q Consensus        96 s-~a~~~~~-~al----~~--------pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l  161 (447)
                      | .-+.-++ .++    ..        +.=+.|++.|-|.-|+.        .+...|.  +.++++.++  ..+|+|.+
T Consensus        96 SL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHFa--------i~E~~Gi--emi~VpM~~--dGPDmD~V  163 (425)
T PF12897_consen   96 SLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHFA--------ITEHFGI--EMIPVPMTE--DGPDMDMV  163 (425)
T ss_dssp             HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHHH--------HHHHCT---EEEEEEEET--TEE-HHHH
T ss_pred             hHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHHH--------HHHhhCc--EEEecCCCC--CCCCHHHH
Confidence            2 3332222 222    11        12256788877776653        3345564  555555552  35999999


Q ss_pred             HHHhhh-hCCcEEEEc--CCCCCC-CCCh---HHHHHH-HHHhCCEEEEehhhhccccccccC-CCCCC---------cc
Q 013217          162 EKTAIL-FRPKLIIAG--ASAYPR-DFDY---PRMRQI-ADAVGALLMMDMAHISGLVAASVV-ADPFK---------YC  223 (447)
Q Consensus       162 ~~~~~~-~~~klii~~--~~~~~~-~~~~---~~i~~i-a~~~g~~livD~a~~~g~~~~~~~-~~~~~---------~~  223 (447)
                      ++++.+ ...|.|++.  .||.++ ...=   ++|+.+ +...+..++-|.|++...+..+.. ..+++         +.
T Consensus       164 e~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnp  243 (425)
T PF12897_consen  164 EELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHLYDEEPRDALLNILDACAKAGNP  243 (425)
T ss_dssp             HHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BSSSSSS------HHHHHHHTT-T
T ss_pred             HHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeeccccccchhhhHHHHHHHHcCCC
Confidence            999854 245788887  334334 3333   444444 234689999999987766533221 11111         12


Q ss_pred             c--EEEeCCCc-ccCCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHH
Q 013217          224 D--VVTTTTHK-SLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN  300 (447)
Q Consensus       224 D--i~~~s~~K-~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~  300 (447)
                      |  ++.+|++| ||+|-..+++..++      +-.+.+.+.......|.--.+++.-. .=|+... .+.++.++++.+.
T Consensus       244 drv~~F~STSKITf~GaGva~~aaS~------~Nl~~~~~~~~~~tIgpdKvNQLRHv-rff~d~~-gGv~aHM~kHa~i  315 (425)
T PF12897_consen  244 DRVYVFASTSKITFPGAGVAFFAASE------ANLAWIKKHLSVQTIGPDKVNQLRHV-RFFKDAE-GGVRAHMRKHAAI  315 (425)
T ss_dssp             TSEEEEEESTTTS-TTSS-EEEEE-H------HHHHHHHHHHHHH-S---HHHHHHHH-HHHHSHH-THHHHHHHHHHHH
T ss_pred             CeEEEEecccccccCCcceeeeecCH------HHHHHHHHHhcCceeCccHHHHHHHH-HHhcChh-hHHHHHHHHHHHH
Confidence            3  77899999 46666558888887      33333322211111122122322111 0111110 1333333333221


Q ss_pred             --------HHHHHHHHH-HCCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEcc--CCCCCCCCCCCCCeEEE
Q 013217          301 --------CRALASRLV-ELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNK--NSVPGDKSALVPGGIRI  369 (447)
Q Consensus       301 --------~~~l~~~L~-~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~--~~~p~~~~~~~~~~iRi  369 (447)
                              .+.|.++|. ..|+--.+.+...+++.++..+ | ....+.+++.+.||.+..  .+.|+...|. .+.|||
T Consensus       316 l~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~-G-~AkrvV~lakeAGV~LT~AGAtfPyg~DP~-D~nIRi  392 (425)
T PF12897_consen  316 LRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLD-G-TAKRVVELAKEAGVALTPAGATFPYGKDPR-DSNIRI  392 (425)
T ss_dssp             HHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEEST-T--HHHHHHHHHHTTEE---TTTTSGGG--TT-S-EEEE
T ss_pred             HhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCC-C-hHHHHHHHHHHhCceeCCCCCCCCCCCCCC-CCcEEe
Confidence                    123344444 3344444444567888888654 4 578899999999999875  2456544443 457999


Q ss_pred             ecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          370 GSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       370 g~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      ..+ +-+    .+|++...+.+.-+++.+
T Consensus       393 APS-~P~----leel~~Am~~~~~cv~la  416 (425)
T PF12897_consen  393 APS-YPS----LEELETAMDVFATCVKLA  416 (425)
T ss_dssp             --S-SS-----HHHHHHHHHHHHHHHHHH
T ss_pred             cCC-CCC----HHHHHHHHHHHHHHHHHH
Confidence            865 444    799999999998887765

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.11  E-value=2.2e-08  Score=105.78  Aligned_cols=268  Identities=17%  Similarity=0.118  Sum_probs=160.3

Q ss_pred             HHHHHHHHcCCCCCccceeeecCCc-HHHHHHHHHHh-c--CCCCEEEEecCCCCcccCCCccccccccccccceeEEEe
Q 013217           71 CQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTAI-L--KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMP  146 (447)
Q Consensus        71 ~~~~~~~~~g~~~~~~~~~v~~~sG-s~a~~~~~~al-~--~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  146 (447)
                      -+..+++++|++-.    |-....| |.+-.+++++. .  ++..+|++..-.|+.++...      .....+.+++++.
T Consensus       129 ~Qtmi~~LtGm~va----NASl~D~atA~aEA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~------~t~~~~~g~~i~~  198 (954)
T PRK12566        129 FQQMTIDLTGLDLA----NASLLDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQTLSVL------RTRAEGFGFELVV  198 (954)
T ss_pred             HHHHHHHHhCchhh----hhhhccchhHHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHH------HHhhhcCCcEEEE
Confidence            35688999999842    2222233 33334444443 1  22568888776665443210      0011122233332


Q ss_pred             cccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC-CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-ccc
Q 013217          147 YRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCD  224 (447)
Q Consensus       147 ~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-~~D  224 (447)
                                  +++++.+.+ ++-.|++..|++.+ ..|+++|.+++|+.|+++++ .+   ..+...+...|-. ++|
T Consensus       199 ------------~~~~~~~~~-~~~~v~vq~P~~~G~i~d~~~i~~~~h~~gal~~~-~~---d~laL~ll~~Pge~GAD  261 (954)
T PRK12566        199 ------------DAVDNLAAH-AVFGALLQYPDTHGEIRDLRPLIDQLHGQQALACV-AA---DLLSLLVLTPPGELGAD  261 (954)
T ss_pred             ------------cchhhcCCC-CEEEEEEECCCCceEEccHHHHHHHHHHcCCEEEE-Ee---CHHHHhCCCChhhcCCc
Confidence                        344444444 57778888888777 66999999999999998663 32   2233334445544 699


Q ss_pred             EEEeCCCc-----ccCCCCCceEEeecCCcchhhHHHHhh----------------------------hccCCCCCCCCc
Q 013217          225 VVTTTTHK-----SLRGPRGGMIFFKKDPVLGVELESAIN----------------------------NAVFPGLQGGPH  271 (447)
Q Consensus       225 i~~~s~~K-----~l~Gp~gG~i~~~~~~~~~~~~~~~i~----------------------------~~~~~~~~g~p~  271 (447)
                      |++++.+-     .++||..|++.++++      +..++-                            +-......+  .
T Consensus       262 I~vG~~Q~fGvp~~~GGP~ag~~a~~~~------~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNIC--T  333 (954)
T PRK12566        262 VVLGSTQRFGVPMGYGGPHAAYFACRDD------YKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNIC--T  333 (954)
T ss_pred             EEeeCCCcCCCCCCCCCCCeeeeeehHH------HHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhh--H
Confidence            99886653     456788899999983      333221                            110000011  1


Q ss_pred             HHHHHHHHHHHH--HhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCee--EEecCCCCCCCHHHHHHHHhhcC
Q 013217          272 NHTIGGLAVCLK--HAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHL--VLVDLRPMGIDGARVEKILDMAS  347 (447)
Q Consensus       272 ~~~~aal~~al~--~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~L~~~g  347 (447)
                      ...+.|+.+++-  .+..+|+++..+++..++.+|++.|.+.|+++...   .++  +.+.+   +.+..++.+...+.|
T Consensus       334 ~qaL~A~~a~~Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~~g~~~~~~---~fF~~~~v~~---~~~~~~~~~~a~~~~  407 (954)
T PRK12566        334 AQVLLANIAGFYAVYHGPEGLKRIAQRVHRLTAILAAGLEAKGIKRLNR---HFFDTLTLEV---GGAQAAIIESAEAAR  407 (954)
T ss_pred             HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCccccC---CccceEEEEc---cCCHHHHHHHHHHCC
Confidence            222333333332  23345678889999999999999999999987643   222  23343   113566767667788


Q ss_pred             eEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHH
Q 013217          348 ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH  392 (447)
Q Consensus       348 I~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~  392 (447)
                      |-++..         ..+.+.+++...++    ++|++.+.+++.
T Consensus       408 ~n~r~~---------~~~~~~~s~de~~~----~~~~~~~~~~f~  439 (954)
T PRK12566        408 INLRIL---------GRGRLGVSLDETCD----EATVARLFDIFL  439 (954)
T ss_pred             CeeEEe---------CCCeEEEEeCCCCC----HHHHHHHHHHhc
Confidence            888652         12468888888887    999999999884

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=99.10  E-value=2e-08  Score=95.86  Aligned_cols=316  Identities=16%  Similarity=0.082  Sum_probs=177.1

Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCCCcc------ceeeecCCcHHHHHHHHHHh-------cCCC-----------CEEEE
Q 013217           60 GNEYIDELETLCQKRALAAFNLDENKW------GVNVQPLSGSPANFEVYTAI-------LKPH-----------DRIMG  115 (447)
Q Consensus        60 g~~~~~~le~~~~~~~~~~~g~~~~~~------~~~v~~~sGs~a~~~~~~al-------~~pg-----------d~Vl~  115 (447)
                      .++...++|...-+|+.++++++....      +.-|...|.+++++.++.+-       ++.+           +-|..
T Consensus       107 ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y  186 (511)
T KOG0628|consen  107 SSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAY  186 (511)
T ss_pred             cCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEE
Confidence            456778999999999999999863210      11233356666665555442       1222           22332


Q ss_pred             ecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhC-----CcEEEEc-CCCCC-CCCChHH
Q 013217          116 LDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR-----PKLIIAG-ASAYP-RDFDYPR  188 (447)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~-----~klii~~-~~~~~-~~~~~~~  188 (447)
                      .+-  .+|-+     ..+..-..+  ++...++.| .++.++.+.|+++++++.     |-+|+.+ ++.++ ...++++
T Consensus       187 ~SD--qahss-----veka~~i~~--VklR~l~td-~n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca~D~l~e  256 (511)
T KOG0628|consen  187 CSD--QAHSS-----VEKACLIAG--VKLRALPTD-ENFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCAFDELEE  256 (511)
T ss_pred             ecC--cccch-----HHHhHhhcc--eeEEEeecc-cCcCCCHHHHHHHHHHHHhCCCccEEEEEeecCccccccccHHH
Confidence            221  11111     112222333  344444466 378899999999998753     4444444 22222 2567999


Q ss_pred             HHHHHHHhCCEEEEehhhhcccc-cccc---CCCCCCcccEEEeCCCcccCCCC-CceEEeecCCc------chhhHHH-
Q 013217          189 MRQIADAVGALLMMDMAHISGLV-AASV---VADPFKYCDVVTTTTHKSLRGPR-GGMIFFKKDPV------LGVELES-  256 (447)
Q Consensus       189 i~~ia~~~g~~livD~a~~~g~~-~~~~---~~~~~~~~Di~~~s~~K~l~Gp~-gG~i~~~~~~~------~~~~~~~-  256 (447)
                      |..+|+++|+|++||+|+ +|.- ....   .-..+.++|-+.+..|||+..-- ...++++++..      ..+.+.+ 
T Consensus       257 lg~Vc~~~glWLHVDAAY-AGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h  335 (511)
T KOG0628|consen  257 LGPVCREEGLWLHVDAAY-AGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYLKH  335 (511)
T ss_pred             hcchhhhcCEEEEeehhh-ccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCceeeeeeecChHhhcc
Confidence            999999999999999995 4422 1111   11334578999999999974332 35566666410      0001110 


Q ss_pred             -HhhhccCCCCCCCCcHHHHHH--HHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEeeeCCCCCeeEEecCCCC
Q 013217          257 -AINNAVFPGLQGGPHNHTIGG--LAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGSDNHLVLVDLRPM  332 (447)
Q Consensus       257 -~i~~~~~~~~~g~p~~~~~aa--l~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~v~~~~~  332 (447)
                       ............-|....+-+  ++.-++....+++++++++..+.++.+.+-+.+ .-|++..   ..++.++.++.+
T Consensus       336 ~~~~~~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~---~~~lgLvcFRlk  412 (511)
T KOG0628|consen  336 AYQGSAPDYRHWQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIVN---KRILGLVCFRLK  412 (511)
T ss_pred             hhhccCCCccccccccccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeec---ccccceeEEeec
Confidence             011100000011222222223  344566666666778888888888877776655 5677764   356677777765


Q ss_pred             CCC--HHHHHHHHhh-cCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          333 GID--GARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       333 ~~~--~~~~~~~L~~-~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      +.+  -+.+.+++.. ..|.+....+-+      .-.||+....-.+   +++||++.-+.|.+.....
T Consensus       413 ~~N~~ne~Ll~~in~~g~i~l~~~~l~g------k~vlRf~V~s~~t---~~~di~~a~~~I~~~a~~l  472 (511)
T KOG0628|consen  413 GDNEINEALLNRLNSSGRIHLVPASLHG------KFVLRFAVCSPLT---NESDIDEAWKIIFEAADEL  472 (511)
T ss_pred             CCcHHHHHHHHHHHhcCcEEEEEeeecc------eEEEEEEecCCCC---cHHHHHHHHHHHHHHHHHH
Confidence            533  2345555544 457664322111      1258987543322   3899999988888776654

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=98.99  E-value=2.4e-07  Score=86.95  Aligned_cols=180  Identities=20%  Similarity=0.279  Sum_probs=110.3

Q ss_pred             hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC----cccEEEeCCCcccC-CCCCceEEeecCCcchhhHHHHhhh
Q 013217          186 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSLR-GPRGGMIFFKKDPVLGVELESAINN  260 (447)
Q Consensus       186 ~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~----~~Di~~~s~~K~l~-Gp~gG~i~~~~~~~~~~~~~~~i~~  260 (447)
                      +++..++|+++|.++|.|++| .|+--.| +.+.+.    -.||++.+  |.++ |-+-|.+++.+      ++.+-+.+
T Consensus       235 lka~~~~v~k~Ggl~IaDEVq-tGfGRtG-~~wgfe~h~v~PDIvTmA--KgiGnG~Pl~AVvtt~------EIa~v~~~  304 (442)
T KOG1404|consen  235 LKAAYKVVRKRGGLFIADEVQ-TGFGRTG-HMWGFESHGVVPDIVTMA--KGIGNGFPLGAVVTTP------EIADVLNQ  304 (442)
T ss_pred             HHHHHHHHHHcCCEEEehhhh-hcccccc-ccccccccCCCccHHHHH--hhccCCCcceeeecCH------HHHHHHHh
Confidence            689999999999999999998 4544444 334443    14777665  9884 44447777777      78877766


Q ss_pred             cc--CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH--CCcEeeeCCCCCeeE----EecCC--
Q 013217          261 AV--FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE--LGYKLVSGGSDNHLV----LVDLR--  330 (447)
Q Consensus       261 ~~--~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~~~~~~----~v~~~--  330 (447)
                      ..  |..+.|.| +...++++ .++.+.+   ++++++..+-..+|.+.|.+  .+.+++.+-....++    +++-+  
T Consensus       305 ~~~~fnTyggnP-~a~avg~a-VL~Vike---e~LqE~aa~vG~yl~~~l~~l~d~h~iIGdVRG~GLm~GvE~V~dk~~  379 (442)
T KOG1404|consen  305 KSSHFNTYGGNP-VACAVGLA-VLKVIKE---ENLQENAAEVGSYLLEKLAALKDKHPIIGDVRGRGLMLGVELVSDKSE  379 (442)
T ss_pred             ccccccccCCCc-hhHHHHHH-HHHHHHH---HhHHHHHHHHHHHHHHHHHHHhhcCCceeecccceeEEEEEEecccCC
Confidence            54  22233333 33223332 4554443   34455566666777777766  345555432222222    23222  


Q ss_pred             --CC-CCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217          331 --PM-GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  391 (447)
Q Consensus       331 --~~-~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i  391 (447)
                        ++ .-.+..+.+.+.+.|+.|+++.+-|       ..+||.+|..-|    .+|++-+++..
T Consensus       380 ~~pp~~~~~~~i~~~cke~Gvlvg~g~i~G-------~vfriaPPlciT----~edi~f~~~~~  432 (442)
T KOG1404|consen  380 PKPPATAEGAVIGEQCKELGVLVGKGGIHG-------NVFRIAPPLCIT----KEDIDFAVEYF  432 (442)
T ss_pred             CCCcchHHHHHHHHHHHHhCeeeecccccc-------eEEEecCCeecc----HHHHHHHHHHH
Confidence              11 1123457788899999997754433       379999887766    89997776655

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=98.97  E-value=4e-07  Score=96.80  Aligned_cols=214  Identities=14%  Similarity=0.056  Sum_probs=119.9

Q ss_pred             HHHHHHhhh-------hCCcEEEEcCC--CCCCC--CC---hHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-
Q 013217          159 DMLEKTAIL-------FRPKLIIAGAS--AYPRD--FD---YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-  221 (447)
Q Consensus       159 ~~l~~~~~~-------~~~klii~~~~--~~~~~--~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-  221 (447)
                      +.+++.+..       .+..+||+.+.  ..++.  .|   +++++++|++||+++|+|+++ .|+--.|.. . ..++ 
T Consensus       567 ~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~-TGfGRtG~~fa~e~~gv  645 (817)
T PLN02974        567 SYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVF-TGLWRLGVESAWELLGC  645 (817)
T ss_pred             HHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecc-cCCCcccchhhHHhcCC
Confidence            456666642       24566777642  22332  22   589999999999999999996 555333311 0 0011 


Q ss_pred             cccEEEeCCCcccCCC--CCceEEeecCCcchhhHHHHhhh-----ccCCCCCCCCcHHHHHHHHHHHHHhcChhH-HHH
Q 013217          222 YCDVVTTTTHKSLRGP--RGGMIFFKKDPVLGVELESAINN-----AVFPGLQGGPHNHTIGGLAVCLKHAQSPEF-KVY  293 (447)
Q Consensus       222 ~~Di~~~s~~K~l~Gp--~gG~i~~~~~~~~~~~~~~~i~~-----~~~~~~~g~p~~~~~aal~~al~~~~~~~~-~~~  293 (447)
                      ..|+++++  |.|.|.  +-|.+++++      ++.+.+..     ....+.+-+-|....++..++++.+.+++. ...
T Consensus       646 ~PDIi~~g--KgLtgG~~Plaa~l~~~------~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~~~l  717 (817)
T PLN02974        646 KPDIACYA--KLLTGGLVPLAATLATE------EVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTNPNL  717 (817)
T ss_pred             CCCEEeec--ccccCCCCccEEEEEcH------HHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHH
Confidence            26999988  998654  457777777      67776632     112222223355556655567877766543 222


Q ss_pred             HHHHHHHHHHHHHHHHH--CCcEeeeCCC-CCeeEEecCCCC----CC---CHHHHHHHHh-hcCeEEccCCCCCCCCCC
Q 013217          294 QNKVVSNCRALASRLVE--LGYKLVSGGS-DNHLVLVDLRPM----GI---DGARVEKILD-MASITLNKNSVPGDKSAL  362 (447)
Q Consensus       294 ~~~~~~~~~~l~~~L~~--~g~~~~~~~~-~~~~~~v~~~~~----~~---~~~~~~~~L~-~~gI~v~~~~~p~~~~~~  362 (447)
                      .++..+....+.+.|.+  .....+..-. ...+.-+.+...    +.   -...+.+.+. ++||.++..         
T Consensus       718 ~~~~~~l~~~l~~~l~~~l~~~p~V~~VRg~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~---------  788 (817)
T PLN02974        718 IPPGSRLRELWDEELVRAISSLPNVERVVSLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPL---------  788 (817)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCeeEEEeeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEec---------
Confidence            23333333334444421  1122221100 011222333211    11   1245666777 899998631         


Q ss_pred             CCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          363 VPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       363 ~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                       .+.||+-++.+++    +++++++.+.|.+.|
T Consensus       789 -Gnvi~l~pP~~i~----~e~l~~~~~~l~~~~  816 (817)
T PLN02974        789 -GNVVYLMCGPTTS----PETCTRLLRKVYRRL  816 (817)
T ss_pred             -CCEEEEeCCCCCC----HHHHHHHHHHHHHHh
Confidence             2478998888887    999999999998765

>PRK08297 L-lysine aminotransferase; Provisional

Probab=98.82  E-value=3.3e-07  Score=92.00  Aligned_cols=209  Identities=18%  Similarity=0.153  Sum_probs=118.4

Q ss_pred             HHHHHHHhhh--hCCcEEEEcCC-CCCCC-----CChHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEE
Q 013217          158 YDMLEKTAIL--FRPKLIIAGAS-AYPRD-----FDYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVV  226 (447)
Q Consensus       158 ~~~l~~~~~~--~~~klii~~~~-~~~~~-----~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~  226 (447)
                      ++++++.+..  .++.+||+.+- ...+.     .-+++|+++|++||+++|+|+++. |+--.+.. . .-++ ..|++
T Consensus       212 ~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~t-GfGRtG~~~a~~~~gv~PDiv  290 (443)
T PRK08297        212 LAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQT-GVGLTGTAWAYQQLGVRPDIV  290 (443)
T ss_pred             HHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-ccCccchHHHHHhcCCCCCEE
Confidence            4566666653  25677777621 12221     236899999999999999999973 44222210 0 0011 26899


Q ss_pred             EeCCCcccCCCCCceEEeecCCcchhhHHHHhhh-----ccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHH
Q 013217          227 TTTTHKSLRGPRGGMIFFKKDPVLGVELESAINN-----AVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNC  301 (447)
Q Consensus       227 ~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~-----~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~  301 (447)
                      ++  .|.+  |.+|++..++       +.+....     ....++.+ .+...+++..++++.+.+++   ..+++.+..
T Consensus       291 ~~--gK~l--~~~a~l~~~~-------i~~~~~~~~~~~~~~~~T~~-gnpl~~aaa~a~L~~l~~~~---l~~~~~~~g  355 (443)
T PRK08297        291 AF--GKKT--QVCGIMAGRR-------VDEVEDNVFAVSSRINSTWG-GNLVDMVRARRILEVIEEDG---LVENAARQG  355 (443)
T ss_pred             Ee--cccc--cccceecchH-------HHHhhhhhccCccccCCCCC-ccHHHHHHHHHHHHHHHhcC---HHHHHHHHH
Confidence            76  4987  3456665432       2221111     11111222 24445555555677665443   455666667


Q ss_pred             HHHHHHHHHC--CcEee---eCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCcccc
Q 013217          302 RALASRLVEL--GYKLV---SGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTT  376 (447)
Q Consensus       302 ~~l~~~L~~~--g~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~  376 (447)
                      ++|.+.|++.  .+..+   ..+. ..+..+.+.... ....+.+.|.++||.+..    ..     ...+|+.++..++
T Consensus       356 ~~l~~~L~~l~~~~~~~~~~vrg~-G~~~~i~~~~~~-~~~~~~~~l~~~Gvl~~~----~~-----~~~lr~~P~l~~t  424 (443)
T PRK08297        356 EYLLARLEELAAEFPAVVSNVRGR-GLMCAFDLPTTA-DRDEVIRRLWEEGVLVLP----CG-----ERSIRFRPALTVT  424 (443)
T ss_pred             HHHHHHHHHHHHHCCCcceeeecc-ceEEEEEecCHH-HHHHHHHHHHHCCEEEec----CC-----CCeEEEECCccCC
Confidence            7777766552  12111   1112 233344553211 234677777889999842    11     2469998887766


Q ss_pred             CCCCHHHHHHHHHHHHHHHHH
Q 013217          377 RGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       377 ~g~~~~di~~l~~~i~~~l~~  397 (447)
                          ++|++++.+++.+++..
T Consensus       425 ----~~eid~~l~~l~~~l~~  441 (443)
T PRK08297        425 ----TEEIDAAIDALRRALPE  441 (443)
T ss_pred             ----HHHHHHHHHHHHHHHHh
Confidence                99999999999988863

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=98.79  E-value=4.8e-06  Score=78.92  Aligned_cols=247  Identities=19%  Similarity=0.165  Sum_probs=133.6

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcC---
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK---  108 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~---  108 (447)
                      ..|++.+++...+.. .  |....-++    ....++  +.+.+.+..+-...+-  ...+.|||+||..++..-.+   
T Consensus        73 anpev~ral~~q~~k-~--~hs~~~~~----t~eav~--l~~~l~~~~~~~~~~r--vff~nsGTeAne~ALK~Ark~~~  141 (433)
T KOG1401|consen   73 ANPEVARALAEQAKK-L--GHSSNGYF----TLEAVE--LEEVLSAVLGKGSAER--VFFCNSGTEANETALKFARKFTG  141 (433)
T ss_pred             CCHHHHHHHHHHHhh-h--eeccCccc----cHHHHH--HHHHHHhcccCCCccE--EEEecCCcHHHHHHHHHHHHhhc
Confidence            368888888776543 2  11111111    112222  2245555553222222  23358999999988764321   


Q ss_pred             ---CCC--EEEEecCCCCcccCCCccccccccccccceeEEEecccC---CCC---CCCCHHHHHHHhhhhC--CcEEEE
Q 013217          109 ---PHD--RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD---EST---GLVDYDMLEKTAILFR--PKLIIA  175 (447)
Q Consensus       109 ---pgd--~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~---~~id~~~l~~~~~~~~--~klii~  175 (447)
                         |-+  .++.+.-.|.|+- .+.      +...+  ......+.+   |+.   ..-|..+++++++.++  ..+||+
T Consensus       142 ~~~~~~~t~~Iaf~nsyHG~t-lga------ls~~~--~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~~~IaAVIv  212 (433)
T KOG1401|consen  142 KKHPEKKTKFIAFENSYHGRT-LGA------LSVTG--NSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHKGEIAAVIV  212 (433)
T ss_pred             ccCCccceeEEEEecCcCCcc-hhH------HHhhc--ccccCCCCCCCCCceeecccCCHHHHHHHHHhCCCceEEEEE
Confidence               223  3777766554431 111      11111  011111111   111   1347899999998865  466777


Q ss_pred             cCC-CCCCCCC-----hHHHHHHHHHhCCEEEEehhhhcccccccc--CCCCCC-cccEEEeCCCcccC-CCCCceEEee
Q 013217          176 GAS-AYPRDFD-----YPRMRQIADAVGALLMMDMAHISGLVAASV--VADPFK-YCDVVTTTTHKSLR-GPRGGMIFFK  245 (447)
Q Consensus       176 ~~~-~~~~~~~-----~~~i~~ia~~~g~~livD~a~~~g~~~~~~--~~~~~~-~~Di~~~s~~K~l~-Gp~gG~i~~~  245 (447)
                      .+- ..++..|     +..|+++|+++|+++|.|+++ .|+--.+.  ...-+. ..|+.+..  |.|+ |.+-|...++
T Consensus       213 EPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~-tG~gR~g~~~a~e~~~~~PDI~t~a--K~L~gGlPigA~~v~  289 (433)
T KOG1401|consen  213 EPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQ-TGLGRLGYGWAQEYFGVTPDITTVA--KPLGGGLPIGATGVR  289 (433)
T ss_pred             ecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhh-hCccccchHHHHHHhCcCCcceeeh--hhccCCceeEEEeeh
Confidence            632 3344333     468889999999999999997 44332221  001111 24888776  9885 4555888888


Q ss_pred             cCCcchhhHHHHhhhccC--CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH
Q 013217          246 KDPVLGVELESAINNAVF--PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE  310 (447)
Q Consensus       246 ~~~~~~~~~~~~i~~~~~--~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~  310 (447)
                      +      ++.+.+.....  .+..-+-|.....+...+++.+.++++   .+++.+..+.|++.|.+
T Consensus       290 ~------kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~---~k~vs~~~k~L~~~l~e  347 (433)
T KOG1401|consen  290 D------KVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPET---LKNVSKIGKELRKLLDE  347 (433)
T ss_pred             H------HHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcCHHH---HHHHHHHHHHHHHHHHH
Confidence            8      78887776433  111111233445555567787777665   55566666666666655

>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]

Probab=98.66  E-value=9.2e-06  Score=73.73  Aligned_cols=287  Identities=17%  Similarity=0.164  Sum_probs=148.2

Q ss_pred             eeeecCCcHHHHHHHHHHh--cCCCCEEEEecCCCCcccCCCcccccccccccc-----ceeEEEecccC----------
Q 013217           88 VNVQPLSGSPANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS-----IYFESMPYRLD----------  150 (447)
Q Consensus        88 ~~v~~~sGs~a~~~~~~al--~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~~~~~~~~~----------  150 (447)
                      +...+.||++||..+++-.  .....-|++.+..|.||++...-...-+.+--+     -++.+.|.+--          
T Consensus       104 vc~F~NSGSEANDLALRLAR~ftkhqDvItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~  183 (452)
T KOG1403|consen  104 VCFFVNSGSEANDLALRLARNFTKHQDVITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMY  183 (452)
T ss_pred             EEEEecCCchhhHHHHHHHHhhcccCceEEEechhccceeeeeeccceeccCCCCcCCCceeEecCCccccccccccccC
Confidence            3455699999999887644  334455677788888886432100000000000     11122222100          


Q ss_pred             C--CCCCCCHHHHHHHhhhh--CCc---EEEEc--CCCCCCCCC----hHHHHHHHHHhCCEEEEehhhhccccccccCC
Q 013217          151 E--STGLVDYDMLEKTAILF--RPK---LIIAG--ASAYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA  217 (447)
Q Consensus       151 ~--~~~~id~~~l~~~~~~~--~~k---lii~~--~~~~~~~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~  217 (447)
                      +  +.+..=-|.+++++.+.  +-.   +.+..  .|.-+.++|    ++++.+..+.+|-..|.|++| .|+--.|.+.
T Consensus       184 ~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQ-vGFGRvG~hy  262 (452)
T KOG1403|consen  184 PDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQ-VGFGRVGSHY  262 (452)
T ss_pred             CcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhh-hcccccchhh
Confidence            0  00111234555555431  111   12222  222222333    578888888999999999998 5554444444


Q ss_pred             CCCC----cccEEEeCCCccc-CCCCCceEEeecCCcchhhHHHHhhhc---cCCCCCCCCcHHHHHHHHHHHHHhcChh
Q 013217          218 DPFK----YCDVVTTTTHKSL-RGPRGGMIFFKKDPVLGVELESAINNA---VFPGLQGGPHNHTIGGLAVCLKHAQSPE  289 (447)
Q Consensus       218 ~~~~----~~Di~~~s~~K~l-~Gp~gG~i~~~~~~~~~~~~~~~i~~~---~~~~~~g~p~~~~~aal~~al~~~~~~~  289 (447)
                      |.+.    -.||++..  |-+ .|.+.+.+.+.+      ++.+.+...   .|..+.|+|-  ..|...+.++.+..+.
T Consensus       263 Wafq~y~fiPDIVtmg--KpmGNGhPVa~Vattk------eIA~Af~atgv~YFNTyGGnPV--sCAv~laVm~v~e~E~  332 (452)
T KOG1403|consen  263 WAFQTYNFIPDIVTMG--KPMGNGHPVAAVATTK------EIAQAFHATGVEYFNTYGGNPV--SCAVGLAVMRVCEDEN  332 (452)
T ss_pred             hhhhhhccccchheec--ccCCCCCeeeEEeccH------HHHHHhccccceehhccCCCch--hHHHHHHHHHHHhhhh
Confidence            4443    24787765  766 466668888887      788777642   2333334442  2222223455555444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEE-ecCCCC---CC-C---HHHHHHHHhh-cCeEEccCCCCCCCC
Q 013217          290 FKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVL-VDLRPM---GI-D---GARVEKILDM-ASITLNKNSVPGDKS  360 (447)
Q Consensus       290 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~-v~~~~~---~~-~---~~~~~~~L~~-~gI~v~~~~~p~~~~  360 (447)
                      +.+..+++-+....+...++. ..+++++-..-.++| +|+-..   .. +   ...+..+|++ ++|.++.. -|    
T Consensus       333 Lq~ha~~vG~~L~~lL~~~k~-kh~~IGDvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaD-GP----  406 (452)
T KOG1403|consen  333 LQEHAQQVGEKLEVLLRRLKQ-KHECIGDVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSAD-GP----  406 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh-hccceeccccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecC-CC----
Confidence            444455554444444444443 234444322222222 343221   11 1   2234455654 78998753 12    


Q ss_pred             CCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          361 ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       361 ~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                        ....+.|-+|..-+    +++.++++..++++|..
T Consensus       407 --h~NilKiKPPmCFn----eena~e~v~~ld~iLT~  437 (452)
T KOG1403|consen  407 --HRNILKIKPPMCFN----EENADEFVLGLDEILTV  437 (452)
T ss_pred             --CCceeecCCCcccC----hhhHHHHHHHHHHHHHH
Confidence              13467777664444    89999999999998874

>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]

Probab=98.62  E-value=8.9e-07  Score=81.72  Aligned_cols=319  Identities=18%  Similarity=0.209  Sum_probs=180.4

Q ss_pred             CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCC----CccceeeecCCcHHHHH--HHHH
Q 013217           31 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE----NKWGVNVQPLSGSPANF--EVYT  104 (447)
Q Consensus        31 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~----~~~~~~v~~~sGs~a~~--~~~~  104 (447)
                      ++=+.|++|-.+.....-.--      |.......++.+.+.   +=.||...    +.-++.+|+.|||.|+.  +-+.
T Consensus        70 ~vL~~VrkAE~ql~~~~ldKE------YlpI~Gl~eF~k~sa---kLa~G~~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl  140 (427)
T KOG1411|consen   70 YVLPSVRKAEQQLASLSLDKE------YLPITGLAEFNKLSA---KLALGDNSPVIKEKRIVTVQTLSGTGALRVGAEFL  140 (427)
T ss_pred             eeeHHHHHHHHHHhhhcccch------hccccchHHHHHHHH---HHhhcCCchhhhccceeEEEeccCcchhhHHHHHH
Confidence            556888888766554211001      111122334443322   22355431    21225788899986654  3455


Q ss_pred             HhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCc-EEEEc-CCCCCC
Q 013217          105 AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPK-LIIAG-ASAYPR  182 (447)
Q Consensus       105 al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~k-lii~~-~~~~~~  182 (447)
                      +..-|+..|.+++|+.+.|..        ..+..|..++...| .++.+..+|++-+.+.+.+.... .|++- .-+||+
T Consensus       141 ~~f~~~~~I~ip~PTWgNh~~--------if~~ag~~~~~yrY-yd~~t~gld~~g~ledl~~~p~gs~ilLhaCaHNPT  211 (427)
T KOG1411|consen  141 ARFYPSRDIYIPDPTWGNHKN--------IFKDAGLPVKFYRY-YDPKTRGLDFKGMLEDLGEAPEGSIILLHACAHNPT  211 (427)
T ss_pred             HhhccccceeecCCcccccCc--------cccccCcceeeeee-ccccccccchHHHHHHHhcCCCCcEEEeehhhcCCC
Confidence            556788999999999887632        23344544444444 45678889999887777662223 34442 234454


Q ss_pred             -C----CChHHHHHHHHHhCCEEEEehhhhccccccccCCCC--CC-----ccc-EEEeCCCccc--CCCCCceE--Eee
Q 013217          183 -D----FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADP--FK-----YCD-VVTTTTHKSL--RGPRGGMI--FFK  245 (447)
Q Consensus       183 -~----~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~--~~-----~~D-i~~~s~~K~l--~Gp~gG~i--~~~  245 (447)
                       .    ..+++|.++.++.+.+-+.|.| +-|+-..++....  +.     +-+ +++-|+.|.|  .|-|.|.+  +|+
T Consensus       212 GvDPt~eqw~ki~~~~~~k~~~pffDmA-YQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNMGLYgERvGa~svvc~  290 (427)
T KOG1411|consen  212 GVDPTKEQWEKISDLIKEKNLLPFFDMA-YQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGLYGERVGALSVVCK  290 (427)
T ss_pred             CCCccHHHHHHHHHHhhhccccchhhhh-hcccccCCchhhHHHHHHHHHcCCceEeehhhhhhcchhhhccceeEEEec
Confidence             3    2468999999999999999998 4665444332211  10     223 5667999986  46676654  444


Q ss_pred             cCCcchhhHHHHhh----hccCCCCCCCCcHHH--HHHHHHHHHHhcCh---hHHHHHHHHHHHHHHHHHHHHHCCcEee
Q 013217          246 KDPVLGVELESAIN----NAVFPGLQGGPHNHT--IGGLAVCLKHAQSP---EFKVYQNKVVSNCRALASRLVELGYKLV  316 (447)
Q Consensus       246 ~~~~~~~~~~~~i~----~~~~~~~~g~p~~~~--~aal~~al~~~~~~---~~~~~~~~~~~~~~~l~~~L~~~g~~~~  316 (447)
                      +.     +...++.    ....| ++++|..+.  +++....--.+...   +.+-..+++...++.|.+.|+..|-.. 
T Consensus       291 ~a-----d~A~rV~SQlk~liRp-mYSnPP~hGArIv~~Il~d~~l~~~W~~evk~MadRi~~mR~~L~d~L~~~gs~~-  363 (427)
T KOG1411|consen  291 DA-----DEAKRVESQLKILIRP-MYSNPPLHGARIVATILSDPDLKNQWLGEVKGMADRIISMRQQLFDALEKEGSPG-  363 (427)
T ss_pred             CH-----HHHHHHHHHHHHHhcc-cccCCCccchhhhhhccCChHHHHHHHHHHHHHHHhhhhhHHHHhHHhhcCCCCc-
Confidence            43     4444433    22333 344555442  33322111111111   235566777777788888887755321 


Q ss_pred             eCCC--CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          317 SGGS--DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       317 ~~~~--~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                       ...  -..+..+.+  .+++++++..+-.++.|....             -=|||...+++     ..+.+++++|..+
T Consensus       364 -~W~hI~~QIGMF~f--Tgl~peQv~~l~ke~~iYmT~-------------dGRiS~aG~ss-----~nV~yLa~aih~v  422 (427)
T KOG1411|consen  364 -NWSHITKQIGMFCF--TGLNPEQVDWLTKEYHIYLTK-------------DGRISMAGLSS-----SNVPYLADAIHAV  422 (427)
T ss_pred             -cHHHHHHhhheeee--cCCCHHHHHHHHhhheeeecc-------------CceEeeccccc-----cCCcccchhhHhH
Confidence             000  012233333  367889999888999998743             23777665554     6788899888776


Q ss_pred             HH
Q 013217          395 VE  396 (447)
Q Consensus       395 l~  396 (447)
                      .+
T Consensus       423 tk  424 (427)
T KOG1411|consen  423 TK  424 (427)
T ss_pred             hc
Confidence            54

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=98.60  E-value=4.8e-06  Score=80.80  Aligned_cols=254  Identities=14%  Similarity=0.077  Sum_probs=124.2

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc----
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  107 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~----  107 (447)
                      -.|.+.+++.+.+... ...++..   ...+...+    ..+++.+.++-..+.   ....+||++|+..++....    
T Consensus        33 ~~p~i~~ai~~~~~~~-~~~~~~~---~~~~~~~~----la~~L~~~~p~~~~~---v~f~~sGseAve~Alkla~~~~~  101 (339)
T PF00202_consen   33 NHPEIAEAIAEQANKL-NYVSFSG---FTHPEAAE----LAEKLAELFPGGLDR---VFFANSGSEAVEAALKLARQYHN  101 (339)
T ss_dssp             T-HHHHHHHHHHHHHC-SSCSTTT---SEEHHHHH----HHHHHHHHSSTTEEE---EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CccccchhHHHHhhhc-ccccccc---eeccchhh----hhhhhhhccccccce---eeeccCchHHHHHHHHHhhcccc
Confidence            4689999988876542 1111111   11121222    235777787332211   2335899999998876544    


Q ss_pred             ---C-CCCEEEEecCCCCcccCC-----CccccccccccccceeEEEecccCCCC---CCCCHHHHHHHhh---hhCCcE
Q 013217          108 ---K-PHDRIMGLDLPHGGHLSH-----GFMTPKRRVSGTSIYFESMPYRLDEST---GLVDYDMLEKTAI---LFRPKL  172 (447)
Q Consensus       108 ---~-pgd~Vl~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~id~~~l~~~~~---~~~~kl  172 (447)
                         . ...+|+...-.|.|.-.-     +....+............+|++.. ..   ..-..+++++.+.   ..+..+
T Consensus       102 ~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~iaa  180 (339)
T PF00202_consen  102 KRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDP-AADEEEQACLNALEELIAALNADEIAA  180 (339)
T ss_dssp             HTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCH-HHHHHHHHHHHHHHHHHHHHHGGGEEE
T ss_pred             cccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCcc-chhhhHHHHHHHHHHHHHhhcCCcEEE
Confidence               2 346888887665443100     000000000000011122232210 00   0001112333222   224567


Q ss_pred             EEEcCCC-CCC----CCC-hHHHHHHHHHhCCEEEEehhhhccccccccCC--CCCC-cccEEEeCCCcccCC-CCCceE
Q 013217          173 IIAGASA-YPR----DFD-YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLRG-PRGGMI  242 (447)
Q Consensus       173 ii~~~~~-~~~----~~~-~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~--~~~~-~~Di~~~s~~K~l~G-p~gG~i  242 (447)
                      ||+.+-. ..+    ..+ +++|+++|++||+++|+|+++ .|+--.|..-  ...+ ..|+++++  |.|.| .+.|.+
T Consensus       181 vivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~-tG~gRtG~~~a~~~~gv~PDiv~~g--K~l~gG~p~sav  257 (339)
T PF00202_consen  181 VIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQ-TGFGRTGKFFASEHYGVDPDIVTFG--KGLGGGLPISAV  257 (339)
T ss_dssp             EEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETT-TTTTTTSSSSGHHHHTSSSSEEEEE--GGGGTTSSEEEE
T ss_pred             EEEeccccccCccccccchhhehcccccccccceeccccc-ccccccCCccceecccccCcccccc--cchhhhhhcccc
Confidence            7776321 112    122 589999999999999999997 4442222110  0001 25999997  99964 344888


Q ss_pred             EeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH
Q 013217          243 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE  310 (447)
Q Consensus       243 ~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~  310 (447)
                      ++++      ++.+.+......+++++ ++..+++....++.+.++++   .+++.+...+|.+.|++
T Consensus       258 ~~~~------~i~~~~~~~~~~~T~~g-~p~~~aaa~~~l~~~~~~~~---~~~~~~~g~~l~~~L~~  315 (339)
T PF00202_consen  258 LGSE------EIMEAFQPGSHGSTFGG-NPLSCAAALATLEILEEEDL---LERVRELGERLREGLRE  315 (339)
T ss_dssp             EEEH------HHHTTSCTTSSTCTTTT--HHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHH
T ss_pred             cccc------hhhcccccccccccccc-chHhhhhhhhHHHhhccHHH---HHHHHHHHHHHHHHHHH
Confidence            8888      67666644332222222 34445555556766655443   44555556666665544

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]

Probab=98.49  E-value=3.1e-05  Score=70.81  Aligned_cols=274  Identities=18%  Similarity=0.226  Sum_probs=149.3

Q ss_pred             eeeecCCcHHHHHHHHHHh--cCCCCEEEEecCCCCcccCCCcccccccccccc-ceeEEEecccCCCCCCCCHHHHHHH
Q 013217           88 VNVQPLSGSPANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS-IYFESMPYRLDESTGLVDYDMLEKT  164 (447)
Q Consensus        88 ~~v~~~sGs~a~~~~~~al--~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~id~~~l~~~  164 (447)
                      +.||..|||.|+.....-+  .-+...|-+.+|....|-.        ...-.| ..+...+|- |.++..+|++-+..-
T Consensus       101 ~~vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~~--------if~~aGf~tv~~Y~yW-d~~~k~~d~e~~Lsd  171 (410)
T KOG1412|consen  101 FGVQSLSGTGALRIAADFLATFYNKNTVYVSNPTWENHHA--------IFEKAGFTTVATYPYW-DAENKCVDLEGFLSD  171 (410)
T ss_pred             cceeeccccchhhhhHHHHHHhcccceeEecCCchhHHHH--------HHHHcCCceeeeeeee-cCCCceecHHHHHHH
Confidence            5788999998887653322  3345678889888777632        111222 112333331 334557999999888


Q ss_pred             hhhhCC-c-EEEEc-CCCCCC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccCCC--CCC-----cc-cEEEe
Q 013217          165 AILFRP-K-LIIAG-ASAYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFK-----YC-DVVTT  228 (447)
Q Consensus       165 ~~~~~~-k-lii~~-~~~~~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~--~~~-----~~-Di~~~  228 (447)
                      ++. .| + ++++. .-+||+ ..|    +..|++.-++.+...+.|.| +-|+-.++....  .+.     +. =+++-
T Consensus       172 l~~-APe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiA-YQGfASGD~~~DawAiR~fV~~g~e~fv~Q  249 (410)
T KOG1412|consen  172 LES-APEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIA-YQGFASGDLDADAWAIRYFVEQGFELFVCQ  249 (410)
T ss_pred             Hhh-CCCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehh-hcccccCCccccHHHHHHHHhcCCeEEEEh
Confidence            876 55 3 33443 234554 332    56788888888999999998 466554443221  111     11 26778


Q ss_pred             CCCccc--CCCCCceEEe--ecCCcchhhHHHHhhhccCCCCCCCCcH--HHHHHHHH---HHHHhcChhHHHHHHHHHH
Q 013217          229 TTHKSL--RGPRGGMIFF--KKDPVLGVELESAINNAVFPGLQGGPHN--HTIGGLAV---CLKHAQSPEFKVYQNKVVS  299 (447)
Q Consensus       229 s~~K~l--~Gp~gG~i~~--~~~~~~~~~~~~~i~~~~~~~~~g~p~~--~~~aal~~---al~~~~~~~~~~~~~~~~~  299 (447)
                      |+.|.|  .+.|.|-+.+  ++. .....+...+....- ...+.|.-  ..|.+...   .+++--....+....|+.+
T Consensus       250 SFaKNfGlYneRvGnltvv~~n~-a~i~~v~SQl~lviR-~~~SNPPAyGArIV~kvL~tP~lre~W~~sik~MssRI~~  327 (410)
T KOG1412|consen  250 SFAKNFGLYNERVGNLTVVVNNP-AVIAGVKSQLTLVIR-SNWSNPPAYGARIVHKVLSTPELREQWIQSIKTMSSRIKK  327 (410)
T ss_pred             hhhhhcccccccccceEEEecCh-hHHHHHHHHHHHHHh-hccCCCcchhhHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            999986  4788765433  332 111111111211111 11122221  11211111   1111001123445556666


Q ss_pred             HHHHHHHHHHHCCcEeeeCCCCCee----EEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccc
Q 013217          300 NCRALASRLVELGYKLVSGGSDNHL----VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMT  375 (447)
Q Consensus       300 ~~~~l~~~L~~~g~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~  375 (447)
                      -+..|++.|..++    ++|+=.|+    .++++  .|+++.++..+.+++.|.+-.           .++|.++     
T Consensus       328 MR~aLrd~L~aL~----TPGtWDHI~~QiGMFSy--TGLtp~qV~~li~~h~vyLl~-----------~GRInis-----  385 (410)
T KOG1412|consen  328 MRTALRDHLVALK----TPGTWDHITQQIGMFSY--TGLTPAQVDHLIENHKVYLLS-----------DGRINIS-----  385 (410)
T ss_pred             HHHHHHHHHHhcC----CCCcHHHHHhhccceee--cCCCHHHHHHHHHhceEEEec-----------CCcEeee-----
Confidence            6777777776643    22322222    23333  478888888888889998732           2345443     


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHH
Q 013217          376 TRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       376 ~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                        |+....+++++.+|+++++..
T Consensus       386 --GLN~~NveyVAkAIde~Vr~~  406 (410)
T KOG1412|consen  386 --GLNMKNVEYVAKAIDETVRAI  406 (410)
T ss_pred             --ccccccHHHHHHHHHHHHHhh
Confidence              334578999999999988754

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=98.15  E-value=8e-05  Score=69.32  Aligned_cols=207  Identities=19%  Similarity=0.256  Sum_probs=116.4

Q ss_pred             CHHHHHHHhhhhC----C-cEEEEcC------CCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccc-cC---CCCCC
Q 013217          157 DYDMLEKTAILFR----P-KLIIAGA------SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAAS-VV---ADPFK  221 (447)
Q Consensus       157 d~~~l~~~~~~~~----~-klii~~~------~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~-~~---~~~~~  221 (447)
                      -++++|++|...+    | ..||+..      -|+....=+..+.+||++||+.+|+|++|..| -..| +.   .+.++
T Consensus       254 Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGg-GaTGk~WaHehw~l~  332 (484)
T KOG1405|consen  254 CLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGG-GATGKFWAHEHWNLD  332 (484)
T ss_pred             HHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCC-CccCceeeehhcCCC
Confidence            4567788886643    4 3455541      12222223689999999999999999999544 2222 11   11122


Q ss_pred             -cccEEEeCCCcccCCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHH
Q 013217          222 -YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN  300 (447)
Q Consensus       222 -~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~  300 (447)
                       -.|+++||  |-|-  .||+. ..+      +++-.-....|..+.|.|.-..+  +...++++..+   .+.++....
T Consensus       333 ~PpD~vTFS--KK~q--~gGff-h~~------~frpn~pYrifNTWmGdP~k~ll--l~~vv~~I~~~---~Ll~n~~~v  396 (484)
T KOG1405|consen  333 SPPDVVTFS--KKFQ--TGGFF-HDE------EFRPNEPYRIFNTWMGDPSKNLL--LEEVVQEIKRE---DLLNNVAHV  396 (484)
T ss_pred             CCccceehh--hhhh--cCccc-cCc------ccCCCchHHHhhhhcCChHHHHH--HHHHHHHHhHH---HHHHHHHHH
Confidence             27999987  6542  23532 222      33322222234445677654443  23345555433   345666666


Q ss_pred             HHHHHHHHHHC-----C-cEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCcc
Q 013217          301 CRALASRLVEL-----G-YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAM  374 (447)
Q Consensus       301 ~~~l~~~L~~~-----g-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~  374 (447)
                      -+.|.++|.+.     | +.-+. |..+ +.-+|+.... -.+.+...++.+|+.+..+   |      ...||+-.+..
T Consensus       397 G~~l~~gL~~Lq~~~p~~~~~~R-GrGT-F~a~d~ps~~-~Rdk~i~~~~~nGv~~GGC---g------~~siRfRPsLv  464 (484)
T KOG1405|consen  397 GKALLKGLLELQAKYPGKINNLR-GRGT-FIAWDCPSGS-IRDKLILIARLNGVNLGGC---G------DKSIRFRPSLV  464 (484)
T ss_pred             HHHHHHHHHHHHHhCchhhhccc-ccce-EEEEeCCChH-HHHHHHHHHHHcCceeccc---c------cceeeecccee
Confidence            67777777552     2 11111 2223 4456876432 2456777778899988643   1      23578765544


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHH
Q 013217          375 TTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       375 ~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      -+    +...+.+.+.+++.+.
T Consensus       465 f~----~~Ha~i~l~~~~k~l~  482 (484)
T KOG1405|consen  465 FR----KHHADIFLDIFDKILA  482 (484)
T ss_pred             eh----hhhHHHHHHHHHHHhc
Confidence            44    7788888888877764

>KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism]

Probab=98.02  E-value=0.00017  Score=65.16  Aligned_cols=332  Identities=16%  Similarity=0.192  Sum_probs=174.5

Q ss_pred             cCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCc-ccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHH
Q 013217           21 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKR-YYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN   99 (447)
Q Consensus        21 ~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~-~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~   99 (447)
                      +.++.-|++--+|..|+..+.+.+.|--.-|..-.. .+.+.++...++ .+...++++++.+...- +...-.+||...
T Consensus         7 ~vvnFaaGPAklp~~VL~e~qkdl~n~~g~GisV~EmSHRsk~f~kii~-~tes~lreLlniPdn~~-vlf~QGGGt~qF   84 (370)
T KOG2790|consen    7 RVVNFAAGPAKLPESVLLEAQKDLLNFNGSGISVMEMSHRSKDFAKIIN-DTESLLRELLNIPDNYK-VLFLQGGGTGQF   84 (370)
T ss_pred             ceeecCCCcccCCHHHHHHHHHHhhccCCCcceEEEecccchhHHHHHH-HHHHHHHHHHcCCCcee-EEEEeCCCcccc
Confidence            467888888889999999888888763222221111 123344444444 44568889999985433 233336666443


Q ss_pred             HHHHHHhc--CCC---CEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCC--CCCCHHHHHHHhhhhCCcE
Q 013217          100 FEVYTAIL--KPH---DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST--GLVDYDMLEKTAILFRPKL  172 (447)
Q Consensus       100 ~~~~~al~--~pg---d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~id~~~l~~~~~~~~~kl  172 (447)
                      .++...|.  +.|   |-|++-+...-+.         ......|. ...+..+..+-+  -.+|.+.++.  ++ +-+.
T Consensus        85 aAv~lNL~glK~g~~AdYiVTGsWS~KA~---------~EAkk~~~-~~~V~~~~k~y~ygkvPd~~~w~~--~~-da~y  151 (370)
T KOG2790|consen   85 AAVPLNLIGLKHGRCADYVVTGSWSAKAA---------EEAKKYGT-PNIVIPKLKSYTYGKVPDPSTWEL--NP-DASY  151 (370)
T ss_pred             cccchhhhccccCCccceEEeccccHHHH---------HHHHhhCC-ceEEeccccccccCcCCChhhccc--CC-CccE
Confidence            44444443  444   5555433211000         00111111 112222222112  2356655542  11 3345


Q ss_pred             EEEcCC--CCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC--cccEEEeCCCcccCCCCC-ceEEeecC
Q 013217          173 IIAGAS--AYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD  247 (447)
Q Consensus       173 ii~~~~--~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~--~~Di~~~s~~K~l~Gp~g-G~i~~~~~  247 (447)
                      |..+..  ..+..+|.  +- +-.-+|+++++|.+  +.++.     .|++  .-+++..+.+|.+ ||-| -+++++++
T Consensus       152 vyyCaNETVHGVEf~~--~P-~~~~~~~vlVaDmS--SnflS-----rpvDvsk~gvi~aGAQKN~-G~aG~Tvvivr~d  220 (370)
T KOG2790|consen  152 VYYCANETVHGVEFDF--IP-VNDPKGAVLVADMS--SNFLS-----RPVDVSKFGVIFAGAQKNV-GPAGVTVVIVRKD  220 (370)
T ss_pred             EEEecCceeeceecCC--CC-CCCCCCceEEEecc--cchhc-----CCccchhcceEEecccccc-CccccEEEEEehh
Confidence            665521  11112211  10 12346899999986  33332     2333  3568888999986 6777 77888873


Q ss_pred             CcchhhHHHHhhh---ccC--------CCCCCCCcHHHHHHHHHHHHHhcChh-HHHHHHHHHHHHHHHHHHHHH-CCcE
Q 013217          248 PVLGVELESAINN---AVF--------PGLQGGPHNHTIGGLAVCLKHAQSPE-FKVYQNKVVSNCRALASRLVE-LGYK  314 (447)
Q Consensus       248 ~~~~~~~~~~i~~---~~~--------~~~~g~p~~~~~aal~~al~~~~~~~-~~~~~~~~~~~~~~l~~~L~~-~g~~  314 (447)
                            +..+...   .++        ...+.||....+..+...++.+++.| .....+.-.+.++.+.+.+.+ .||-
T Consensus       221 ------llg~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il~~GGl~a~e~~n~~KskllYd~iD~s~gfy  294 (370)
T KOG2790|consen  221 ------LLGNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVFEWILEKGGLAAMEKLNQEKSKLLYDAIDNSNGFY  294 (370)
T ss_pred             ------hhcccccCCccccceeeeccccccccCCCeeeeeehhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCCeE
Confidence                  3322211   111        12245666666666677788777554 466666667788889999987 4764


Q ss_pred             eee-CC-CCCee-EEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217          315 LVS-GG-SDNHL-VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  391 (447)
Q Consensus       315 ~~~-~~-~~~~~-~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i  391 (447)
                      ... .. ..+.+ +.+.+.+.+++.+.+.+..+++=|.+.     |+.   .-+|||-|.-  +.  ++-++.+++++++
T Consensus       295 ~cpVe~~~RS~MNV~Fri~~d~Le~eFLkeA~~~~mv~LK-----GhR---SVGGiRASlY--NA--isv~~~q~L~~~m  362 (370)
T KOG2790|consen  295 RCPVEPSVRSRMNVPFRIEKDELEAEFLKEAAKEHMVQLK-----GHR---SVGGIRASLY--NA--ISVEEVQKLAAFM  362 (370)
T ss_pred             EcccchhhhhhcccceeecchHHHHHHHHHHHHhhhhccc-----ccc---ccccchhhhh--cc--ccHHHHHHHHHHH
Confidence            322 11 12222 123333333444444445444444432     332   2358998753  32  4589999999999


Q ss_pred             HHHHH
Q 013217          392 HEGVE  396 (447)
Q Consensus       392 ~~~l~  396 (447)
                      ++..+
T Consensus       363 ~~F~k  367 (370)
T KOG2790|consen  363 KEFQK  367 (370)
T ss_pred             HHHHH
Confidence            87654

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=97.99  E-value=0.00011  Score=68.62  Aligned_cols=283  Identities=12%  Similarity=0.074  Sum_probs=134.5

Q ss_pred             HHHHHHHHHHHHHHHcCCC-CCccceeeecCCcH-HHHHHHHHHhcCC----C--CEEEEecCCCCcccCCCcccccccc
Q 013217           64 IDELETLCQKRALAAFNLD-ENKWGVNVQPLSGS-PANFEVYTAILKP----H--DRIMGLDLPHGGHLSHGFMTPKRRV  135 (447)
Q Consensus        64 ~~~le~~~~~~~~~~~g~~-~~~~~~~v~~~sGs-~a~~~~~~al~~p----g--d~Vl~~~~~~~~~~~~~~~~~~~~~  135 (447)
                      ..++|+.++ ++-++.|-- .+.-  .|.+++|+ +.+.+++.+|..+    +  -+|+...|-|..+..     +..- 
T Consensus        45 s~eL~~~Ir-~LH~~VGNAvt~gr--~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~-----qt~~-  115 (363)
T PF04864_consen   45 SPELERQIR-RLHRVVGNAVTDGR--YIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPE-----QTDF-  115 (363)
T ss_dssp             -HHHHHHHH-HHHHHH-SB--TTS--EEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHH-----HCCC-
T ss_pred             cHHHHHHHH-HHHHHhccccccCc--EEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHH-----HHHh-
Confidence            356775544 566666632 2211  24457887 8888888888422    2  256666665544321     1111 


Q ss_pred             ccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEE-EEcCCCCCC-CCChHHHHHHHHHhCCEEEEehhhhcccccc
Q 013217          136 SGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI-IAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAA  213 (447)
Q Consensus       136 ~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~kli-i~~~~~~~~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~  213 (447)
                       +....++.   .-|...+. +-        ......| ++++||||- .. -+.   +++.-+..+|.|-|++-...  
T Consensus       116 -f~s~~y~w---~Gda~~~~-~~--------~~~~~~IElVTSPNNPDG~l-r~~---V~~g~~~k~I~D~AYYWPhy--  176 (363)
T PF04864_consen  116 -FDSRLYKW---AGDASNFK-NS--------DNPSPYIELVTSPNNPDGQL-REA---VLNGSSGKVIHDLAYYWPHY--  176 (363)
T ss_dssp             -T-BTTEEE---EEECCCGT-T---------S-CCGEEEEEESS-TTT----------SSTTTEEEEEEE-TT-STTT--
T ss_pred             -ccccCccc---cccHHhhc-cC--------CCCCCeEEEEeCCCCCcccc-cch---hcCCCCcceeeeeeeecccc--
Confidence             11111221   11211121 10        0012333 566889985 21 111   23444566799998653321  


Q ss_pred             ccCCCCCC-cccEEEeCCCccc--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHH---HHHHHhcC
Q 013217          214 SVVADPFK-YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLA---VCLKHAQS  287 (447)
Q Consensus       214 ~~~~~~~~-~~Di~~~s~~K~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~---~al~~~~~  287 (447)
                        .|.+-+ .-|++.||.+|.=  +|-|-||-+++++     +..+++...+.....|...-.++-++-   +.+.....
T Consensus       177 --TpI~~~aD~DiMLFT~SK~TGHAGSR~GWAlVKD~-----~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~~~~~  249 (363)
T PF04864_consen  177 --TPITAPADHDIMLFTLSKLTGHAGSRFGWALVKDE-----EVAKKMTKYMELNTIGVSRDSQLRALKILKVVLDGYGT  249 (363)
T ss_dssp             --S---S-B--SEEEEEHHHHCS-GGG-EEEEEES-H-----HHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHCCH
T ss_pred             --cccCCCCCCceEEEEEecccCccccccceeeecCH-----HHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhcccC
Confidence              111111 3489999999952  4666699999986     677766554332233333333322211   11111111


Q ss_pred             h----h-HHHHHHHHHHHHHHHHHHHHHC-CcEeee--C----------CCCCeeEEecCCCCCCCHHHHHHHHhhcCeE
Q 013217          288 P----E-FKVYQNKVVSNCRALASRLVEL-GYKLVS--G----------GSDNHLVLVDLRPMGIDGARVEKILDMASIT  349 (447)
Q Consensus       288 ~----~-~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~----------~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~  349 (447)
                      .    . |.--.+.+.++-+.|.+.+... -|.+..  +          .+...+.|+.+..++  ..++...|+++||.
T Consensus       250 ~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~ee--d~DC~~~l~~~~I~  327 (363)
T PF04864_consen  250 EKGTEDIFHFGYSTMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCEREE--DEDCYAVLREAKII  327 (363)
T ss_dssp             HTTTTSHHHHHHHHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE---SEEEEEESSCG--GSSHHHHHHCTTEE
T ss_pred             CCCccchHHHHHHHHHHHHHHHHHHHHhcCceecCcCCchhccccccccCCCCCeEEEecCCcc--cccHHHHHHhCCcc
Confidence            0    1 2222334445555666666552 233321  0          011235688776432  35788999999999


Q ss_pred             EccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217          350 LNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       350 v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~  393 (447)
                      .+.+...|.    .+.++|+|+  +-+    ++|++.+.+.|..
T Consensus       328 tr~G~~fga----~~ryVRlSm--l~~----~d~Fd~l~~rL~~  361 (363)
T PF04864_consen  328 TRSGVLFGA----DSRYVRLSM--LKR----DDDFDQLLERLSK  361 (363)
T ss_dssp             EEEGGGGTS-----TTEEEEES--SS-----HHHHHHHHHHHHC
T ss_pred             cCCCCccCC----CCCeEEEec--cCC----HHHHHHHHHHHHh
Confidence            987644332    356899986  344    8999999988764

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=97.85  E-value=0.0065  Score=61.25  Aligned_cols=273  Identities=15%  Similarity=0.134  Sum_probs=149.3

Q ss_pred             HHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh-cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC
Q 013217           72 QKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD  150 (447)
Q Consensus        72 ~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al-~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  150 (447)
                      +..++++.|++-..  +.+ .--||.|-.++.++. .+++.+.++.+..|+-.++...      .+..+.+++++     
T Consensus       169 QTmi~dlTGL~~aN--ASL-LDEgTAaaEAm~l~~~~~krkk~vvd~~~hpqtlsV~~------TRa~~~~i~v~-----  234 (1001)
T KOG2040|consen  169 QTMITDLTGLPMAN--ASL-LDEGTAAAEAMALCNRINKRKKFVVDSNCHPQTLSVVK------TRAKGFGIKVV-----  234 (1001)
T ss_pred             HHhhhhccCCcccc--hhh-hccchhHHHHHHHHHhhcccceEEecCCCCcchhhhhh------ccccccceeEE-----
Confidence            35567788887421  011 145775555555544 5667778887777766554221      11112112211     


Q ss_pred             CCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC-CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-cccEEEe
Q 013217          151 ESTGLVDYDMLEKTAILFRPKLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTT  228 (447)
Q Consensus       151 ~~~~~id~~~l~~~~~~~~~klii~~~~~~~~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-~~Di~~~  228 (447)
                          ..|+.+...-. + +...|++..|..-+ ..|+.++.+.+++.|..+++-    ..++..-....|-. ++||+++
T Consensus       235 ----~~~~~~~~~s~-~-~v~gvlvQYP~t~G~i~d~~el~~~a~~~~s~vv~a----tDLLaLtiLrpPgefGaDIavG  304 (1001)
T KOG2040|consen  235 ----VSDIKEADYSS-K-DVSGVLVQYPDTEGSVLDFDELVELAHANGSLVVMA----TDLLALTILRPPGEFGADIAVG  304 (1001)
T ss_pred             ----ecCHHHhhccc-c-ceeEEEEEcCCCCCcccCHHHHHHHhhccCceEEEe----ehhhHHHccCChhhcCceeeec
Confidence                12333322111 1 45566776665444 889999999999999887652    22222223334433 6999999


Q ss_pred             CCCcc-----cCCCCCceEEeecCCc--------------ch-hhHH-------HHhhhccCCCCCCCCcHH-------H
Q 013217          229 TTHKS-----LRGPRGGMIFFKKDPV--------------LG-VELE-------SAINNAVFPGLQGGPHNH-------T  274 (447)
Q Consensus       229 s~~K~-----l~Gp~gG~i~~~~~~~--------------~~-~~~~-------~~i~~~~~~~~~g~p~~~-------~  274 (447)
                      |.+..     .+||..||+.++++..              .+ ..+.       +.+++-.     .|.|.-       .
T Consensus       305 SsQRFGVPlGYGGPHAaFfAv~~~l~R~mPGRiiGvtkD~~gk~a~RLALQTREQHIrRDK-----ATSNICTAQALLAN  379 (1001)
T KOG2040|consen  305 SSQRFGVPLGYGGPHAAFFAVSESLVRMMPGRIIGVTKDALGKEAYRLALQTREQHIRRDK-----ATSNICTAQALLAN  379 (1001)
T ss_pred             cccccCccccCCCchHHHHHHHHHHHhhCCCceEeeeecccccHHHHHHHHHHHHHhhhhc-----cchhhhHHHHHHHH
Confidence            99873     2466667777765310              00 0000       0111100     111211       1


Q ss_pred             HHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCC
Q 013217          275 IGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNS  354 (447)
Q Consensus       275 ~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~  354 (447)
                      ++|+.+ + +....++++..+++...+-.|...|+..|-+++..   .++-.+.+.-.+ +.+++...-.+.+|-++.. 
T Consensus       380 maAmya-i-YHGp~gL~~IArrvh~~T~~l~~~l~~aghel~~k---~fFDTLkI~~~~-s~~~~l~rA~~~~iNlr~~-  452 (1001)
T KOG2040|consen  380 MAAMYA-I-YHGPHGLKEIARRVHNLTLILAEGLKNAGHELQHK---PFFDTLKIRCGC-SAEEVLDRAAKRQINLRLV-  452 (1001)
T ss_pred             HHHHHh-h-hcCcHHHHHHHHHHHHHHHHHHHHHhhcchhhccc---cccceEEEEecC-cHHHHHHHHHhhcCceEEe-
Confidence            222221 1 12345678889999999999999999888776642   222223332212 4566666555666666531 


Q ss_pred             CCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHH
Q 013217          355 VPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH  392 (447)
Q Consensus       355 ~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~  392 (447)
                              ..+-|-+++...++    ++|++.+...+.
T Consensus       453 --------ed~tigvslDETv~----~~DvddLl~vf~  478 (1001)
T KOG2040|consen  453 --------EDGTIGVSLDETVT----EKDVDDLLWVFN  478 (1001)
T ss_pred             --------ecCceEEeeccccc----HHHHHHHHHHHc
Confidence                    23356677666666    999999988885

>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]

Probab=97.62  E-value=0.0028  Score=56.98  Aligned_cols=112  Identities=21%  Similarity=0.280  Sum_probs=74.3

Q ss_pred             CCCCCHHHHHHHhhhhCCcEEEEc---CCCC-CC-CCChHHHHHHHHHhCCEEEEehhhhccccccccCC-----CCCCc
Q 013217          153 TGLVDYDMLEKTAILFRPKLIIAG---ASAY-PR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA-----DPFKY  222 (447)
Q Consensus       153 ~~~id~~~l~~~~~~~~~klii~~---~~~~-~~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~-----~~~~~  222 (447)
                      .-.-|++.+++.+++..+..|++-   .|.+ |+ +.++++|+.||..|+++-+|..|+  |+-......     -..+.
T Consensus       138 ~l~tdleav~~~iee~g~dcilci~sttscfapr~pd~leaiaaica~~diphivnnay--glqsee~i~~iaa~~~~gr  215 (432)
T KOG3843|consen  138 ELITDLEAVEAIIEELGEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAY--GLQSEECIHKIAAAAECGR  215 (432)
T ss_pred             HHHHhHHHHHHHHHHhCCceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhcccc--ccchHHHHHHHHHHhhhcc
Confidence            345799999999988667755543   2332 34 567999999999999999998874  322111100     11224


Q ss_pred             ccEEEeCCCcccCCCCCceEEe-ecCCcchhhHHHHhhhccCCCC-CCCCcH
Q 013217          223 CDVVTTTTHKSLRGPRGGMIFF-KKDPVLGVELESAINNAVFPGL-QGGPHN  272 (447)
Q Consensus       223 ~Di~~~s~~K~l~Gp~gG~i~~-~~~~~~~~~~~~~i~~~~~~~~-~g~p~~  272 (447)
                      .|.++-|..|.|.-|-||.++. -++     .+++.+.+. +||. ..+|+.
T Consensus       216 ida~vqsldknf~vpvggaiia~fk~-----n~iq~iak~-ypgrasa~ps~  261 (432)
T KOG3843|consen  216 IDAFVQSLDKNFMVPVGGAIIAAFKD-----NFIQEIAKM-YPGRASASPSL  261 (432)
T ss_pred             HHHHHHHhhhcceeecchhHhhHhHH-----HHHHHHHHh-CCCccccCccH
Confidence            7899999999999999976653 232     577777665 5655 344554

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=97.24  E-value=0.00083  Score=56.88  Aligned_cols=54  Identities=15%  Similarity=0.094  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHHcC----CCCCccceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCc
Q 013217           65 DELETLCQKRALAAFN----LDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGG  122 (447)
Q Consensus        65 ~~le~~~~~~~~~~~g----~~~~~~~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~  122 (447)
                      .++.+.+.+++.+.+|    ++++    +|.+++|+ +++..++.++++|||.|++.+|.|++
T Consensus        95 ~~lR~AiA~~l~~~~g~~v~~~pd----~Ivvt~Ga~~al~~l~~~l~dpGD~VlVp~P~Y~~  153 (153)
T PLN02994         95 ANFRKAIANFMAEARGGRVKFDAD----MIVLSAGATAANEIIMFCIADPGDAFLVPTPYYAA  153 (153)
T ss_pred             HHHHHHHHHHHHHHhCCCCccchh----heEEcCCHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Confidence            4566666678888877    3454    45558887 89999999999999999999987653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	447
3ou5_A	490	Human Mitochondrial Serine Hydroxymethyltransferase		1e-162
1bj4_A	470	Recombinant Serine Hydroxymethyltransferase (human)		1e-157
1ls3_B	483	Crystal Structure Of The Complex Between Rabbit Cyt		1e-156
1cj0_A	470	Crystal Structure Of Rabbit Cytosolic Serine Hydrox		1e-156
1rvu_A	483	E75q Mutant Of Rabbit Cytosolic Serine Hydroxymethy		1e-156
1rv3_A	483	E75l Mutant Of Rabbit Cytosolic Serine Hydroxymethy		1e-155
1eji_A	478	Recombinant Serine Hydroxymethyltransferase (Mouse)		1e-150
1kkj_A	419	Crystal Structure Of Serine Hydroxymethyltransferas		1e-104
2vi8_A	405	Crystal Structure Of S172absshmt Internal Aldimine		1e-104
1yjs_A	419	K226q Mutant Of Serine Hydroxymethyltransferase Fro		1e-104
2vgs_A	407	Crystal Structure Of E53qbsshmt Internal Aldimine L		1e-103
2vmv_A	405	Crystal Structure Of F351gbsshmt Internal Aldimine		1e-103
2w7d_A	405	Crystal Structure Of Y51fbsshmt Internal Aldimine L		1e-103
1yjy_A	419	K226m Mutant Of Serine Hydroxymethyltransferase Fro		1e-103
2vmn_A	405	Crystal Structure Of N341absshmt Internal Aldimine		1e-103
2w7i_A	405	Crystal Structure Of Y61absshmt Internal Aldimine L		1e-103
2vmr_A	405	Crystal Structure Of Y60absshmt Internal Aldimine L		1e-103
2dkj_A	407	Crystal Structure Of T.Th.Hb8 Serine Hydroxymethylt		1e-103
3pgy_A	415	Serine Hydroxymethyltransferase From Staphylococcus		1e-101
3ecd_A	425	Crystal Structure Of Serine Hydroxymethyltransferas		1e-100
3h7f_A	447	Crystal Structure Of Serine Hydroxymethyltransferas		3e-98
1dfo_A	417	Crystal Structure At 2.4 Angstrom Resolution Of E.		8e-97
1eqb_A	417	X-Ray Crystal Structure At 2.7 Angstroms Resolution		2e-96
3g8m_A	417	Serine Hydroxymethyltransferase Y55f Mutant Length		2e-96
3n0l_A	417	Crystal Structure Of Serine Hydroxymethyltransferas		1e-93
3gbx_A	420	Serine Hydroxymethyltransferase From Salmonella Typ		2e-91

>pdb|3OU5|A Chain A, Human Mitochondrial Serine Hydroxymethyltransferase 2 Length = 490

Iteration: 1
 Score =  567 bits (1461), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 271/451 (60%), Positives = 340/451 (75%), Gaps = 12/451 (2%)
Query: 5   NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
           +PE+ E++ +EK+RQ + LELIASENF SRA +EA+GSCL NKYSEG PGKRYYGG E +
Sbjct: 39  DPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVV 98
Query: 65  DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
           DE+E LCQ+RAL AF+LD  +WGVNVQP SGSPAN  VYTA+L+PHDRIMGLDLP GGHL
Sbjct: 99  DEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHL 158
Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
           +HG+M+  +R+S TSI+FESMPY+L+  TGL+DY+ L  TA LFRP+LIIAG SAY R  
Sbjct: 159 THGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYARLI 218
Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
           DY RMR++ D V A L+ DMAHISGLVAA V+  PFK+ D+VTTTTHK+LRG R G+IF+
Sbjct: 219 DYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIFY 278
Query: 245 KK-----DPVLGVEL----ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQN 295
           +K     DP  G E+    E  IN AVFP LQGGPHNH I  +AV LK A +P F+ Y  
Sbjct: 279 RKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSL 338
Query: 296 KVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSV 355
           +V+ N RA+A  L+E GY LVSGG+DNHLVLVDLRP G+DGAR E++L++ SIT NKN+ 
Sbjct: 339 QVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTC 398
Query: 356 PGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMN 415
           PGD+SA+ PGG+R+G+PA+T+R F E +F  + DFI EGV I LE K   + +KLQDF +
Sbjct: 399 PGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKS--KTAKLQDFKS 456
Query: 416 FVTSPNFSLMNNVADLRGRVEALTTQFPIPG 446
           F+   +      +A+LR RVE     FP+PG
Sbjct: 457 FLLK-DSETSQRLANLRQRVEQFARAFPMPG 486

>pdb|1BJ4|A Chain A, Recombinant Serine Hydroxymethyltransferase (human) Length = 470

Iteration: 1
 Score =  552 bits (1423), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 277/451 (61%), Positives = 339/451 (75%), Gaps = 12/451 (2%)
Query: 7   EVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDE 66
           EV  II KE  RQ   LELIASENF SRAV+EA+GSCL NKYSEG PG+RYYGG E+IDE
Sbjct: 22  EVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDE 81
Query: 67  LETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSH 126
           LETLCQKRAL A+ LD   WGVNVQP SGSPANF VYTA+++PH RIMGLDLP GGHL+H
Sbjct: 82  LETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTH 141
Query: 127 GFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDY 186
           GFMT K+++S TSI+FESMPY+++  TG ++YD LE+ A LF PKLIIAG S Y R+ +Y
Sbjct: 142 GFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAGTSCYSRNLEY 201
Query: 187 PRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKK 246
            R+R+IAD  GA LM DMAHISGLVAA VV  PF++C VVTTTTHK+LRG R GMIF++K
Sbjct: 202 ARLRKIADENGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRK 261
Query: 247 -----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKV 297
                DP  G E    LES IN+AVFPGLQGGPHNH I G+AV LK A + EFKVYQ++V
Sbjct: 262 GVKSVDPATGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFKVYQHQV 321
Query: 298 VSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPG 357
           V+NCRAL+  L ELGYK+V+GGSDNHL+LVDLR  G DG R EK+L+  SI  NKN+ PG
Sbjct: 322 VANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPG 381
Query: 358 DKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQ-GSKLQDFMNF 416
           D+SAL P G+R+G+PA+T+RG  EK+F  +A FIH G+E+TL+ +      + L++F   
Sbjct: 382 DRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVAATLKEFKER 441
Query: 417 VTSPNFSLMNNVADLRGRVEALTTQFPIPGV 447
           +    +     V  LR  VE+  + FP+PG+
Sbjct: 442 LAGDKYQAA--VQALREEVESFASLFPLPGL 470

>pdb|1LS3|B Chain B, Crystal Structure Of The Complex Between Rabbit Cytosolic Serine Hydroxymethyltransferase And Triglu-5-Formyl-Tetrahydrofolate Length = 483

Iteration: 1
 Score =  547 bits (1410), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 277/457 (60%), Positives = 341/457 (74%), Gaps = 11/457 (2%)
Query: 1   MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 60
           ++  + EV +II KE  RQ   LELIASENF SRAV+EA+GSCL NKYSEG PG+RYYGG
Sbjct: 25  LKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGG 84
Query: 61  NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 120
            E+IDELETLCQKRAL A+ LD   WGVNVQP SGSPANF VYTA+++PH RIMGLDLP 
Sbjct: 85  TEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 144
Query: 121 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 180
           GGHL+HGFMT K+++S TSI+FESM Y+++  TG +DYD LE+ A LF PKLIIAG S Y
Sbjct: 145 GGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCY 204
Query: 181 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 240
            R+ DY R+R+IAD  GA LM DMAHISGLV A VV  PF++C VVTTTTHK+LRG R G
Sbjct: 205 SRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAG 264
Query: 241 MIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 291
           MIF+++     DP  G E    LES IN+AVFPGLQGGPHNH I G+AV LK A +PEFK
Sbjct: 265 MIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFK 324
Query: 292 VYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 351
            YQ +VV+NCRAL++ LVELGYK+V+GGSDNHL+LVDLR  G DG R EK+L+  SI  N
Sbjct: 325 EYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACN 384
Query: 352 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLV-QGSKL 410
           KN+ PGDKSAL P G+R+G+PA+T+RG  EK+F  +A FIH G+E+T++ +      + L
Sbjct: 385 KNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATL 444
Query: 411 QDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 447
           ++F   +   +      V  LR  VE+    FP+PG+
Sbjct: 445 KEFKEKLAG-DEKHQRAVRALRQEVESFAALFPLPGL 480

>pdb|1CJ0|A Chain A, Crystal Structure Of Rabbit Cytosolic Serine Hydroxymethyltransferase At 2.8 Angstrom Resolution Length = 470

Iteration: 1
 Score =  546 bits (1408), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 277/457 (60%), Positives = 341/457 (74%), Gaps = 11/457 (2%)
Query: 1   MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 60
           ++  + EV +II KE  RQ   LELIASENF SRAV+EA+GSCL NKYSEG PG+RYYGG
Sbjct: 12  LKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGG 71
Query: 61  NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 120
            E+IDELETLCQKRAL A+ LD   WGVNVQP SGSPANF VYTA+++PH RIMGLDLP 
Sbjct: 72  TEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 131
Query: 121 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 180
           GGHL+HGFMT K+++S TSI+FESM Y+++  TG +DYD LE+ A LF PKLIIAG S Y
Sbjct: 132 GGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCY 191
Query: 181 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 240
            R+ DY R+R+IAD  GA LM DMAHISGLV A VV  PF++C VVTTTTHK+LRG R G
Sbjct: 192 SRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAG 251
Query: 241 MIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 291
           MIF+++     DP  G E    LES IN+AVFPGLQGGPHNH I G+AV LK A +PEFK
Sbjct: 252 MIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFK 311
Query: 292 VYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 351
            YQ +VV+NCRAL++ LVELGYK+V+GGSDNHL+LVDLR  G DG R EK+L+  SI  N
Sbjct: 312 EYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACN 371
Query: 352 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLV-QGSKL 410
           KN+ PGDKSAL P G+R+G+PA+T+RG  EK+F  +A FIH G+E+T++ +      + L
Sbjct: 372 KNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATL 431
Query: 411 QDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 447
           ++F   +   +      V  LR  VE+    FP+PG+
Sbjct: 432 KEFKEKLAG-DEKHQRAVRALRQEVESFAALFPLPGL 467

>pdb|1RVU|A Chain A, E75q Mutant Of Rabbit Cytosolic Serine Hydroxymethyltransferase Length = 483

Iteration: 1
 Score =  546 bits (1407), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 276/457 (60%), Positives = 341/457 (74%), Gaps = 11/457 (2%)
Query: 1   MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 60
           ++  + EV +II KE  RQ   LELIASENF SRAV+EA+GSCL NKYS+G PG+RYYGG
Sbjct: 25  LKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSQGYPGQRYYGG 84
Query: 61  NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 120
            E+IDELETLCQKRAL A+ LD   WGVNVQP SGSPANF VYTA+++PH RIMGLDLP 
Sbjct: 85  TEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 144
Query: 121 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 180
           GGHL+HGFMT K+++S TSI+FESM Y+++  TG +DYD LE+ A LF PKLIIAG S Y
Sbjct: 145 GGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCY 204
Query: 181 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 240
            R+ DY R+R+IAD  GA LM DMAHISGLV A VV  PF++C VVTTTTHK+LRG R G
Sbjct: 205 SRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAG 264
Query: 241 MIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 291
           MIF+++     DP  G E    LES IN+AVFPGLQGGPHNH I G+AV LK A +PEFK
Sbjct: 265 MIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFK 324
Query: 292 VYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 351
            YQ +VV+NCRAL++ LVELGYK+V+GGSDNHL+LVDLR  G DG R EK+L+  SI  N
Sbjct: 325 EYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACN 384
Query: 352 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLV-QGSKL 410
           KN+ PGDKSAL P G+R+G+PA+T+RG  EK+F  +A FIH G+E+T++ +      + L
Sbjct: 385 KNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATL 444
Query: 411 QDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 447
           ++F   +   +      V  LR  VE+    FP+PG+
Sbjct: 445 KEFKEKLAG-DEKHQRAVRALRQEVESFAALFPLPGL 480

>pdb|1RV3|A Chain A, E75l Mutant Of Rabbit Cytosolic Serine Hydroxymethyltransferase, Complex With Glycine Length = 483

Iteration: 1
 Score =  544 bits (1401), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 276/457 (60%), Positives = 340/457 (74%), Gaps = 11/457 (2%)
Query: 1   MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 60
           ++  + EV +II KE  RQ   LELIASENF SRAV+EA+GSCL NKYS G PG+RYYGG
Sbjct: 25  LKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGG 84
Query: 61  NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 120
            E+IDELETLCQKRAL A+ LD   WGVNVQP SGSPANF VYTA+++PH RIMGLDLP 
Sbjct: 85  TEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 144
Query: 121 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 180
           GGHL+HGFMT K+++S TSI+FESM Y+++  TG +DYD LE+ A LF PKLIIAG S Y
Sbjct: 145 GGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCY 204
Query: 181 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 240
            R+ DY R+R+IAD  GA LM DMAHISGLV A VV  PF++C VVTTTTHK+LRG R G
Sbjct: 205 SRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAG 264
Query: 241 MIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 291
           MIF+++     DP  G E    LES IN+AVFPGLQGGPHNH I G+AV LK A +PEFK
Sbjct: 265 MIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFK 324
Query: 292 VYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 351
            YQ +VV+NCRAL++ LVELGYK+V+GGSDNHL+LVDLR  G DG R EK+L+  SI  N
Sbjct: 325 EYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACN 384
Query: 352 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLV-QGSKL 410
           KN+ PGDKSAL P G+R+G+PA+T+RG  EK+F  +A FIH G+E+T++ +      + L
Sbjct: 385 KNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATL 444
Query: 411 QDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 447
           ++F   +   +      V  LR  VE+    FP+PG+
Sbjct: 445 KEFKEKLAG-DEKHQRAVRALRQEVESFAALFPLPGL 480

>pdb|1EJI|A Chain A, Recombinant Serine Hydroxymethyltransferase (Mouse) Length = 478

Iteration: 1
 Score =  527 bits (1358), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 267/457 (58%), Positives = 333/457 (72%), Gaps = 11/457 (2%)
Query: 1   MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 60
           ++  + EV  II KE  RQ   LELIASENF SRAV+EA+GS L NKYSEG PG+RYYGG
Sbjct: 20  LKDSDAEVYSIIKKESNRQRVGLELIASENFASRAVLEALGSSLNNKYSEGYPGQRYYGG 79
Query: 61  NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 120
            E+IDELE LCQKRAL A++LD   WGVNVQP SGSPANF VYTA+++PH RI GLDLP 
Sbjct: 80  TEFIDELEXLCQKRALQAYHLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIXGLDLPD 139
Query: 121 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 180
           GGHL+HGF T K+++S TSI+FES PY++   TG ++YD LE+ A LF PKLIIAG S Y
Sbjct: 140 GGHLTHGFXTDKKKISATSIFFESXPYKVYPETGYINYDQLEENASLFHPKLIIAGTSCY 199
Query: 181 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 240
            R+ DY R+R+IAD  GA L  D AHISGLVAA VV  PF++C VVTTTTHK+LRG R G
Sbjct: 200 SRNLDYARLRKIADDNGAYLXADXAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAG 259
Query: 241 MIFFKK-----DPVLG----VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 291
            IF++K     DP  G     ELES IN+AVFPGLQGGPHNH I G+AV LK A + EFK
Sbjct: 260 XIFYRKGVRSVDPKTGKETYYELESLINSAVFPGLQGGPHNHAIAGVAVALKQAXTTEFK 319
Query: 292 VYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 351
           +YQ +V++NCRAL+  L ELGYK+V+GGSDNHL+L DLR  G DG R EK+L+  SI  N
Sbjct: 320 IYQLQVLANCRALSDALTELGYKIVTGGSDNHLILXDLRSKGTDGGRAEKVLEACSIACN 379
Query: 352 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKK-LVQGSKL 410
           KN+ PGDKSAL P G+R+G+PA+T+RG  E++F  +A FIH G+E+TL+ +      + L
Sbjct: 380 KNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQSHXATKATL 439
Query: 411 QDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 447
           ++F   +   +  + + VA LR  VE   + F +PG+
Sbjct: 440 KEFKEKLAG-DEKIQSAVATLREEVENFASNFSLPGL 475

>pdb|1KKJ|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From B.Stearothermophilus Length = 419

Iteration: 1
 Score =  374 bits (961), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/388 (50%), Positives = 257/388 (66%), Gaps = 16/388 (4%)
Query: 5   NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
           +P+V   I +E++RQ   +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG EY+
Sbjct: 8   DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYV 67
Query: 65  DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
           D +E L ++RA   F  +      NVQP SG+ AN  VY  +L+  D ++G++L HGGHL
Sbjct: 68  DIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
           +HG  +P   V+ + + +  + Y +D  T ++DYD + + A L RPKLI+A ASAYPR  
Sbjct: 124 THG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRII 178
Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
           D+ + R+IAD VGA LM+DMAHI+GLVAA +  +P  Y   VTTTTHK+LRGPRGGMI  
Sbjct: 179 DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILC 238
Query: 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
           ++      +    I+ A+FPG+QGGP  H I   AV    A   +FK Y  +VV N + L
Sbjct: 239 QE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRL 292
Query: 305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALV 363
           AS L   G+ LVSGG+DNHL+LVDLRP  + G   EK+LD   IT+NKN++P D +S  V
Sbjct: 293 ASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFV 352
Query: 364 PGGIRIGSPAMTTRGFSEKEFVAIADFI 391
             GIRIG+ A+TTRGF  +E   IA  I
Sbjct: 353 TSGIRIGTAAVTTRGFGLEEMDEIAAII 380

>pdb|2VI8|A Chain A, Crystal Structure Of S172absshmt Internal Aldimine Length = 405

Iteration: 1
 Score =  374 bits (959), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/388 (50%), Positives = 257/388 (66%), Gaps = 16/388 (4%)
Query: 5   NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
           +P+V   I +E++RQ   +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG EY+
Sbjct: 8   DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYV 67
Query: 65  DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
           D +E L ++RA   F  +      NVQP SG+ AN  VY  +L+  D ++G++L HGGHL
Sbjct: 68  DIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
           +HG  +P   V+ + + +  + Y +D  T ++DYD + + A L RPKLI+A A+AYPR  
Sbjct: 124 THG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAAAAYPRII 178
Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
           D+ + R+IAD VGA LM+DMAHI+GLVAA +  +P  Y   VTTTTHK+LRGPRGGMI  
Sbjct: 179 DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILC 238
Query: 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
           ++      +    I+ A+FPG+QGGP  H I   AV    A   +FK Y  +VV N + L
Sbjct: 239 QE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRL 292
Query: 305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALV 363
           AS L   G+ LVSGG+DNHL+LVDLRP  + G   EK+LD   IT+NKN++P D +S  V
Sbjct: 293 ASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFV 352
Query: 364 PGGIRIGSPAMTTRGFSEKEFVAIADFI 391
             GIRIG+ A+TTRGF  +E   IA  I
Sbjct: 353 TSGIRIGTAAVTTRGFGLEEMDEIAAII 380

>pdb|1YJS|A Chain A, K226q Mutant Of Serine Hydroxymethyltransferase From B. Stearothermophilus, Complex With Glycine Length = 419

Iteration: 1
 Score =  374 bits (959), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/388 (50%), Positives = 257/388 (66%), Gaps = 16/388 (4%)
Query: 5   NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
           +P+V   I +E++RQ   +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG EY+
Sbjct: 8   DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYV 67
Query: 65  DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
           D +E L ++RA   F  +      NVQP SG+ AN  VY  +L+  D ++G++L HGGHL
Sbjct: 68  DIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
           +HG  +P   V+ + + +  + Y +D  T ++DYD + + A L RPKLI+A ASAYPR  
Sbjct: 124 THG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRII 178
Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
           D+ + R+IAD VGA LM+DMAHI+GLVAA +  +P  Y   VTTTTH++LRGPRGGMI  
Sbjct: 179 DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHQTLRGPRGGMILC 238
Query: 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
           ++      +    I+ A+FPG+QGGP  H I   AV    A   +FK Y  +VV N + L
Sbjct: 239 QE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRL 292
Query: 305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALV 363
           AS L   G+ LVSGG+DNHL+LVDLRP  + G   EK+LD   IT+NKN++P D +S  V
Sbjct: 293 ASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFV 352
Query: 364 PGGIRIGSPAMTTRGFSEKEFVAIADFI 391
             GIRIG+ A+TTRGF  +E   IA  I
Sbjct: 353 TSGIRIGTAAVTTRGFGLEEMDEIAAII 380

>pdb|2VGS|A Chain A, Crystal Structure Of E53qbsshmt Internal Aldimine Length = 407

Iteration: 1
 Score =  373 bits (958), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/388 (50%), Positives = 257/388 (66%), Gaps = 16/388 (4%)
Query: 5   NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
           +P+V   I +E++RQ   +ELIASENF SRAVMEA GS LTNKY++G PG+RYYGG EY+
Sbjct: 8   DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAQGYPGRRYYGGCEYV 67
Query: 65  DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
           D +E L ++RA   F  +      NVQP SG+ AN  VY  +L+  D ++G++L HGGHL
Sbjct: 68  DIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
           +HG  +P   V+ + + +  + Y +D  T ++DYD + + A L RPKLI+A ASAYPR  
Sbjct: 124 THG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRII 178
Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
           D+ + R+IAD VGA LM+DMAHI+GLVAA +  +P  Y   VTTTTHK+LRGPRGGMI  
Sbjct: 179 DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILC 238
Query: 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
           ++      +    I+ A+FPG+QGGP  H I   AV    A   +FK Y  +VV N + L
Sbjct: 239 QE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRL 292
Query: 305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALV 363
           AS L   G+ LVSGG+DNHL+LVDLRP  + G   EK+LD   IT+NKN++P D +S  V
Sbjct: 293 ASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFV 352
Query: 364 PGGIRIGSPAMTTRGFSEKEFVAIADFI 391
             GIRIG+ A+TTRGF  +E   IA  I
Sbjct: 353 TSGIRIGTAAVTTRGFGLEEMDEIAAII 380

>pdb|2VMV|A Chain A, Crystal Structure Of F351gbsshmt Internal Aldimine Length = 405

Iteration: 1
 Score =  373 bits (958), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/388 (50%), Positives = 257/388 (66%), Gaps = 16/388 (4%)
Query: 5   NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
           +P+V   I +E++RQ   +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG EY+
Sbjct: 8   DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYV 67
Query: 65  DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
           D +E L ++RA   F  +      NVQP SG+ AN  VY  +L+  D ++G++L HGGHL
Sbjct: 68  DIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
           +HG  +P   V+ + + +  + Y +D  T ++DYD + + A L RPKLI+A ASAYPR  
Sbjct: 124 THG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRII 178
Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
           D+ + R+IAD VGA LM+DMAHI+GLVAA +  +P  Y   VTTTTHK+LRGPRGGMI  
Sbjct: 179 DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILC 238
Query: 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
           ++      +    I+ A+FPG+QGGP  H I   AV    A   +FK Y  +VV N + L
Sbjct: 239 QE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRL 292
Query: 305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALV 363
           AS L   G+ LVSGG+DNHL+LVDLRP  + G   EK+LD   IT+NKN++P D +S  V
Sbjct: 293 ASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPGV 352
Query: 364 PGGIRIGSPAMTTRGFSEKEFVAIADFI 391
             GIRIG+ A+TTRGF  +E   IA  I
Sbjct: 353 TSGIRIGTAAVTTRGFGLEEMDEIAAII 380

>pdb|2W7D|A Chain A, Crystal Structure Of Y51fbsshmt Internal Aldimine Length = 405

Iteration: 1
 Score =  373 bits (957), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/388 (50%), Positives = 257/388 (66%), Gaps = 16/388 (4%)
Query: 5   NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
           +P+V   I +E++RQ   +ELIASENF SRAVMEA GS LTNK++EG PG+RYYGG EY+
Sbjct: 8   DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKFAEGYPGRRYYGGCEYV 67
Query: 65  DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
           D +E L ++RA   F  +      NVQP SG+ AN  VY  +L+  D ++G++L HGGHL
Sbjct: 68  DIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
           +HG  +P   V+ + + +  + Y +D  T ++DYD + + A L RPKLI+A ASAYPR  
Sbjct: 124 THG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRII 178
Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
           D+ + R+IAD VGA LM+DMAHI+GLVAA +  +P  Y   VTTTTHK+LRGPRGGMI  
Sbjct: 179 DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILC 238
Query: 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
           ++      +    I+ A+FPG+QGGP  H I   AV    A   +FK Y  +VV N + L
Sbjct: 239 QE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRL 292
Query: 305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALV 363
           AS L   G+ LVSGG+DNHL+LVDLRP  + G   EK+LD   IT+NKN++P D +S  V
Sbjct: 293 ASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFV 352
Query: 364 PGGIRIGSPAMTTRGFSEKEFVAIADFI 391
             GIRIG+ A+TTRGF  +E   IA  I
Sbjct: 353 TSGIRIGTAAVTTRGFGLEEMDEIAAII 380

>pdb|1YJY|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B. Stearothermophilus, Complex With Serine Length = 419

Iteration: 1
 Score =  372 bits (955), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/388 (50%), Positives = 256/388 (65%), Gaps = 16/388 (4%)
Query: 5   NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
           +P+V   I +E++RQ   +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG EY+
Sbjct: 8   DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYV 67
Query: 65  DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
           D +E L ++RA   F  +      NVQP SG+ AN  VY  +L+  D ++G++L HGGHL
Sbjct: 68  DIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
           +HG  +P   V+ + + +  + Y +D  T ++DYD + + A L RPKLI+A ASAYPR  
Sbjct: 124 THG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRII 178
Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
           D+ + R+IAD VGA LM+DMAHI+GLVAA +  +P  Y   VTTTTH +LRGPRGGMI  
Sbjct: 179 DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHMTLRGPRGGMILC 238
Query: 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
           ++      +    I+ A+FPG+QGGP  H I   AV    A   +FK Y  +VV N + L
Sbjct: 239 QE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRL 292
Query: 305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALV 363
           AS L   G+ LVSGG+DNHL+LVDLRP  + G   EK+LD   IT+NKN++P D +S  V
Sbjct: 293 ASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFV 352
Query: 364 PGGIRIGSPAMTTRGFSEKEFVAIADFI 391
             GIRIG+ A+TTRGF  +E   IA  I
Sbjct: 353 TSGIRIGTAAVTTRGFGLEEMDEIAAII 380

>pdb|2VMN|A Chain A, Crystal Structure Of N341absshmt Internal Aldimine Length = 405

Iteration: 1
 Score =  372 bits (954), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/388 (50%), Positives = 256/388 (65%), Gaps = 16/388 (4%)
Query: 5   NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
           +P+V   I +E++RQ   +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG EY+
Sbjct: 8   DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYV 67
Query: 65  DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
           D +E L ++RA   F  +      NVQP SG+ AN  VY  +L+  D ++G++L HGGHL
Sbjct: 68  DIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
           +HG  +P   V+ + + +  + Y +D  T ++DYD + + A L RPKLI+A ASAYPR  
Sbjct: 124 THG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRII 178
Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
           D+ + R+IAD VGA LM+DMAHI+GLVAA +  +P  Y   VTTTTHK+LRGPRGGMI  
Sbjct: 179 DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILC 238
Query: 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
           ++      +    I+ A+FPG+QGGP  H I   AV    A   +FK Y  +VV N + L
Sbjct: 239 QE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRL 292
Query: 305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALV 363
           AS L   G+ LVSGG+DNHL+LVDLRP  + G   EK+LD   IT+NK ++P D +S  V
Sbjct: 293 ASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKATIPYDPESPFV 352
Query: 364 PGGIRIGSPAMTTRGFSEKEFVAIADFI 391
             GIRIG+ A+TTRGF  +E   IA  I
Sbjct: 353 TSGIRIGTAAVTTRGFGLEEMDEIAAII 380

>pdb|2W7I|A Chain A, Crystal Structure Of Y61absshmt Internal Aldimine Length = 405

Iteration: 1
 Score =  371 bits (953), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/388 (50%), Positives = 256/388 (65%), Gaps = 16/388 (4%)
Query: 5   NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
           +P+V   I +E++RQ   +ELIASENF SRAVMEA GS LTNKY+EG PG+RY GG EY+
Sbjct: 8   DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYAGGCEYV 67
Query: 65  DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
           D +E L ++RA   F  +      NVQP SG+ AN  VY  +L+  D ++G++L HGGHL
Sbjct: 68  DIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
           +HG  +P   V+ + + +  + Y +D  T ++DYD + + A L RPKLI+A ASAYPR  
Sbjct: 124 THG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRII 178
Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
           D+ + R+IAD VGA LM+DMAHI+GLVAA +  +P  Y   VTTTTHK+LRGPRGGMI  
Sbjct: 179 DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILC 238
Query: 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
           ++      +    I+ A+FPG+QGGP  H I   AV    A   +FK Y  +VV N + L
Sbjct: 239 QE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRL 292
Query: 305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALV 363
           AS L   G+ LVSGG+DNHL+LVDLRP  + G   EK+LD   IT+NKN++P D +S  V
Sbjct: 293 ASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFV 352
Query: 364 PGGIRIGSPAMTTRGFSEKEFVAIADFI 391
             GIRIG+ A+TTRGF  +E   IA  I
Sbjct: 353 TSGIRIGTAAVTTRGFGLEEMDEIAAII 380

>pdb|2VMR|A Chain A, Crystal Structure Of Y60absshmt Internal Aldimine Length = 405

Iteration: 1
 Score =  371 bits (953), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/388 (50%), Positives = 256/388 (65%), Gaps = 16/388 (4%)
Query: 5   NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
           +P+V   I +E++RQ   +ELIASENF SRAVMEA GS LTNKY+EG PG+R YGG EY+
Sbjct: 8   DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRAYGGCEYV 67
Query: 65  DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
           D +E L ++RA   F  +      NVQP SG+ AN  VY  +L+  D ++G++L HGGHL
Sbjct: 68  DIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
           +HG  +P   V+ + + +  + Y +D  T ++DYD + + A L RPKLI+A ASAYPR  
Sbjct: 124 THG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRII 178
Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
           D+ + R+IAD VGA LM+DMAHI+GLVAA +  +P  Y   VTTTTHK+LRGPRGGMI  
Sbjct: 179 DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILC 238
Query: 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
           ++      +    I+ A+FPG+QGGP  H I   AV    A   +FK Y  +VV N + L
Sbjct: 239 QE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRL 292
Query: 305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALV 363
           AS L   G+ LVSGG+DNHL+LVDLRP  + G   EK+LD   IT+NKN++P D +S  V
Sbjct: 293 ASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFV 352
Query: 364 PGGIRIGSPAMTTRGFSEKEFVAIADFI 391
             GIRIG+ A+TTRGF  +E   IA  I
Sbjct: 353 TSGIRIGTAAVTTRGFGLEEMDEIAAII 380

>pdb|2DKJ|A Chain A, Crystal Structure Of T.Th.Hb8 Serine Hydroxymethyltransferase Length = 407

Iteration: 1
 Score =  370 bits (950), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/383 (51%), Positives = 254/383 (66%), Gaps = 15/383 (3%)
Query: 10  EIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELET 69
           E+I  E++RQ + LELIASENF S+ V EAVGS LTNKY+EG PG RYYGG E ID +E+
Sbjct: 13  ELIALEEKRQREGLELIASENFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVES 72
Query: 70  LCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFM 129
           L  +RA A F      W  NVQP SGS AN  VY A+++P D +MG+DL  GGHL+HG  
Sbjct: 73  LAIERAKALFG---AAWA-NVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGGHLTHG-- 126
Query: 130 TPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRM 189
               RV+ +   ++ + Y +   T L+D + + + A+  RPK+I+AGASAYPR +D+   
Sbjct: 127 ---SRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASAYPRFWDFKAF 183
Query: 190 RQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPV 249
           R+IAD VGA L++DMAH +GLVAA +  +P  Y  VVT+TTHK+LRGPRGG+I    DP 
Sbjct: 184 REIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRGGLI-LSNDPE 242
Query: 250 LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLV 309
           LG      I+  +FPG+QGGP  H I G AV    A  PEFK Y   VV N + LA  L 
Sbjct: 243 LG----KRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELA 298
Query: 310 ELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVPGGIR 368
             GY++V+GG+DNHL LVDLRP G+ G   E+ LD   IT+NKN++P D K   V  GIR
Sbjct: 299 RRGYRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIR 358
Query: 369 IGSPAMTTRGFSEKEFVAIADFI 391
           IG+PA+TTRGF+ +E   +A+ I
Sbjct: 359 IGTPAITTRGFTPEEMPLVAELI 381

>pdb|3PGY|A Chain A, Serine Hydroxymethyltransferase From Staphylococcus Aureus, S95p Mutant. Length = 415

Iteration: 1
 Score =  364 bits (934), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/404 (47%), Positives = 260/404 (64%), Gaps = 17/404 (4%)
Query: 8   VCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDEL 67
           + E I +E +RQ  ++ELIASENF S AVMEA GS LTNKY+EG PG+RYYGG E++D  
Sbjct: 14  IAEAIEREFQRQNSNIELIASENFVSEAVMEAQGSVLTNKYAEGYPGRRYYGGCEFVDVT 73
Query: 68  ETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHG 127
           E++   RA A F  +     VNVQP SG  AN  VY   L+  D ++G++L HGGHL+HG
Sbjct: 74  ESIAIDRAKALFGAEH----VNVQPHSGPQANMAVYLVALEMGDTVLGMNLSHGGHLTHG 129
Query: 128 FMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYP 187
              P   V+ +  ++  + Y +D+ T  ++YD + K A+  +PKLI+AGASAY R  D+ 
Sbjct: 130 --AP---VNFSGKFYNFVEYGVDKDTERINYDEVRKLALEHKPKLIVAGASAYSRTIDFK 184
Query: 188 RMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKD 247
           + ++IAD V A LM+DMAHI+GLVAA +  +P +Y D VTTTTHK+LRGPRGGMI  K+ 
Sbjct: 185 KFKEIADEVNAKLMVDMAHIAGLVAAGLHPNPVEYADFVTTTTHKTLRGPRGGMILCKE- 243
Query: 248 PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASR 307
                E +  I+  +FPG+QGGP  H I   AV    A    FK YQ +VV N + LA  
Sbjct: 244 -----EYKKDIDKTIFPGIQGGPLEHVIAAKAVAFGEALENNFKTYQQQVVKNAKVLAEA 298
Query: 308 LVELGYKLVSGGSDNHLVLVDLR-PMGIDGARVEKILDMASITLNKNSVPGDKSA-LVPG 365
           L+  G+++VSGG+DNHLV VD++  +G+ G   E+ LD   IT NKN++P D+    V  
Sbjct: 299 LINEGFRIVSGGTDNHLVAVDVKGSIGLTGKEAEETLDSVGITCNKNTIPFDQEKPFVTS 358
Query: 366 GIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSK 409
           GIR+G+PA TTRGF EK F  +A  I   ++ + + +KL Q  +
Sbjct: 359 GIRLGTPAATTRGFDEKAFEEVAKIISLALKNSKDEEKLQQAKE 402

>pdb|3ECD|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From Burkholderia Pseudomallei Length = 425

Iteration: 1
 Score =  360 bits (925), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/386 (50%), Positives = 250/386 (64%), Gaps = 15/386 (3%)
Query: 12  ITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLC 71
           I KE ERQ   +ELIASEN  SRAV++A GS LTNKY+EG PGKRYYGG E+ DE+E L 
Sbjct: 24  ILKELERQQSQVELIASENIVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALA 83
Query: 72  QKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTP 131
            +R    FN        NVQP SG+ AN  V  A+ KP D ++G+ L  GGHL+HG    
Sbjct: 84  IERVKRLFNAGH----ANVQPHSGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHG---A 136
Query: 132 KRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQ 191
           K  +SG   +F ++ Y +   T L+DYD +E  A   +P LIIAG SAYPR  D+ R R 
Sbjct: 137 KPALSGK--WFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAYPRKLDFARFRA 194
Query: 192 IADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLG 251
           IAD+VGA LM+DMAHI+G++AA   A+P ++  VVT+TTHK+LRGPRGG +    +    
Sbjct: 195 IADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLRGPRGGFVLTNDE---- 250
Query: 252 VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL 311
            E+   IN+AVFPGLQGGP  H I G AV    A + +FK Y ++V++N +AL   L   
Sbjct: 251 -EIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG 309
Query: 312 GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVPGGIRIG 370
           G  LV+GG+DNHL+LVDLRP G+ GA+VE+ L+ A IT NKN +P D +   +  GIR+G
Sbjct: 310 GVDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLG 369
Query: 371 SPAMTTRGFSEKEFVAIADFIHEGVE 396
           +PA TTRGF   EF  +   I E  E
Sbjct: 370 TPAGTTRGFGAAEFREVGRLILEVFE 395

>pdb|3H7F|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From Mycobacterium Tuberculosis Length = 447

Iteration: 1
 Score =  355 bits (911), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 189/394 (47%), Positives = 256/394 (64%), Gaps = 21/394 (5%)
Query: 4   CNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEY 63
            +P++ E++ KE  RQ  +LE+IASENF  RAV++A GS LTNKY+EGLPG+RYYGG E+
Sbjct: 29  VDPDIAELLAKELGRQRDTLEMIASENFVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEH 88
Query: 64  IDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGH 123
           +D +E L + RA A F  +      NVQP SG+ AN  V  A++ P +R++GLDL +GGH
Sbjct: 89  VDVVENLARDRAKALFGAEF----ANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGH 144
Query: 124 LSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRD 183
           L+HG      R++ +   +E+  Y +D +T L+D D +  TA+ FRPK+IIAG SAYPR 
Sbjct: 145 LTHGM-----RLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAYPRV 199
Query: 184 FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIF 243
            D+   R IAD VGA L++DMAH +GLVAA +   P  + DVV+TT H +L G R G+I 
Sbjct: 200 LDFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVHXTLGGGRSGLIV 259
Query: 244 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRA 303
            K+      +   AIN+AVFPG QGGP  H I G AV LK A +PEF   Q + +S  R 
Sbjct: 260 GKQ------QYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARI 313
Query: 304 LASRLV-----ELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD 358
           +A RL+     + G  +VSGG+D HLVLVDLR   +DG   E +L    IT+N+N+VP D
Sbjct: 314 IADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPND 373
Query: 359 -KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 391
            +  +V  G+RIG+PA+ TRGF + EF  +AD I
Sbjct: 374 PRPPMVTSGLRIGTPALATRGFGDTEFTEVADII 407

>pdb|1DFO|A Chain A, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli Serine Hydroxymethyltransferase In Complex With Glycine And 5-Formyl Tetrahydrofolate Length = 417

Iteration: 1
 Score =  350 bits (899), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 199/388 (51%), Positives = 258/388 (66%), Gaps = 14/388 (3%)
Query: 5   NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
           + E+ + + +EK RQ + +ELIASEN+TS  VM+A GS LTNKY+EG PGKRYYGG EY+
Sbjct: 12  DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYV 71
Query: 65  DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
           D +E L   RA   F  D      NVQP SGS ANF VYTA+L+P D ++G++L HGGHL
Sbjct: 72  DIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHL 127
Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
           +HG  +P   V+ +   +  +PY +D +TG +DY  LEK A   +PK+II G SAY    
Sbjct: 128 THG--SP---VNFSGKLYNIVPYGID-ATGHIDYADLEKQAKEHKPKMIIGGFSAYSGVV 181
Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
           D+ +MR+IAD++GA L +DMAH++GLVAA V  +P  +  VVTTTTHK+L GPRGG+I  
Sbjct: 182 DWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILA 241
Query: 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
           K       EL   +N+AVFPG QGGP  H I G AV LK A  PEFK YQ +V  N +A+
Sbjct: 242 KGG---SEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAM 298
Query: 305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALV 363
               +E GYK+VSGG+DNHL LVDL    + G   +  L  A+IT+NKNSVP D KS  V
Sbjct: 299 VEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFV 358
Query: 364 PGGIRIGSPAMTTRGFSEKEFVAIADFI 391
             GIR+G+PA+T RGF E E   +A ++
Sbjct: 359 TSGIRVGTPAITRRGFKEAEAKELAGWM 386

>pdb|1EQB|A Chain A, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of Ternary Complex Between The Y65f Mutant Of E-Coli Serine Hydroxymethyltransferase, Glycine And 5-Formyl Tetrahydrofolate Length = 417

Iteration: 1
 Score =  348 bits (894), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 198/388 (51%), Positives = 258/388 (66%), Gaps = 14/388 (3%)
Query: 5   NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
           + E+ + + +EK RQ + +ELIASEN+TS  VM+A GS LTNKY+EG PGKRY+GG EY+
Sbjct: 12  DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYFGGCEYV 71
Query: 65  DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
           D +E L   RA   F  D      NVQP SGS ANF VYTA+L+P D ++G++L HGGHL
Sbjct: 72  DIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHL 127
Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
           +HG  +P   V+ +   +  +PY +D +TG +DY  LEK A   +PK+II G SAY    
Sbjct: 128 THG--SP---VNFSGKLYNIVPYGID-ATGHIDYADLEKQAKEHKPKMIIGGFSAYSGVV 181
Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
           D+ +MR+IAD++GA L +DMAH++GLVAA V  +P  +  VVTTTTHK+L GPRGG+I  
Sbjct: 182 DWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILA 241
Query: 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
           K       EL   +N+AVFPG QGGP  H I G AV LK A  PEFK YQ +V  N +A+
Sbjct: 242 KGG---SEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAM 298
Query: 305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALV 363
               +E GYK+VSGG+DNHL LVDL    + G   +  L  A+IT+NKNSVP D KS  V
Sbjct: 299 VEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFV 358
Query: 364 PGGIRIGSPAMTTRGFSEKEFVAIADFI 391
             GIR+G+PA+T RGF E E   +A ++
Sbjct: 359 TSGIRVGTPAITRRGFKEAEAKELAGWM 386

>pdb|3G8M|A Chain A, Serine Hydroxymethyltransferase Y55f Mutant Length = 417

Iteration: 1
 Score =  348 bits (894), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 198/388 (51%), Positives = 258/388 (66%), Gaps = 14/388 (3%)
Query: 5   NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
           + E+ + + +EK RQ + +ELIASEN+TS  VM+A GS LTNK++EG PGKRYYGG EY+
Sbjct: 12  DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKFAEGYPGKRYYGGCEYV 71
Query: 65  DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
           D +E L   RA   F  D      NVQP SGS ANF VYTA+L+P D ++G++L HGGHL
Sbjct: 72  DIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHL 127
Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
           +HG  +P   V+ +   +  +PY +D +TG +DY  LEK A   +PK+II G SAY    
Sbjct: 128 THG--SP---VNFSGKLYNIVPYGID-ATGHIDYADLEKQAKEHKPKMIIGGFSAYSGVV 181
Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
           D+ +MR+IAD++GA L +DMAH++GLVAA V  +P  +  VVTTTTHK+L GPRGG+I  
Sbjct: 182 DWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILA 241
Query: 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
           K       EL   +N+AVFPG QGGP  H I G AV LK A  PEFK YQ +V  N +A+
Sbjct: 242 KGG---SEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAM 298
Query: 305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALV 363
               +E GYK+VSGG+DNHL LVDL    + G   +  L  A+IT+NKNSVP D KS  V
Sbjct: 299 VEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFV 358
Query: 364 PGGIRIGSPAMTTRGFSEKEFVAIADFI 391
             GIR+G+PA+T RGF E E   +A ++
Sbjct: 359 TSGIRVGTPAITRRGFKEAEAKELAGWM 386

>pdb|3N0L|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From Campylobacter Jejuni Length = 417

Iteration: 1
 Score =  340 bits (872), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 185/392 (47%), Positives = 248/392 (63%), Gaps = 16/392 (4%)
Query: 1   MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 60
           ++  + E+ ++  KE ERQ + LE IASENFT   V E  GS LTNKY+EG PGKRYYGG
Sbjct: 6   LEXFDKEIFDLTNKELERQCEGLEXIASENFTLPEVXEVXGSILTNKYAEGYPGKRYYGG 65
Query: 61  NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 120
            E++DE+ETL  +R    FN    K+  NVQP SGS AN  VY A++ P D+I+G DL H
Sbjct: 66  CEFVDEIETLAIERCKKLFNC---KF-ANVQPNSGSQANQGVYAALINPGDKILGXDLSH 121
Query: 121 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 180
           GGHL+HG      +VS +   +ES  Y + E  G +DY+ + + A   +PKLI+ GASAY
Sbjct: 122 GGHLTHG-----AKVSSSGKXYESCFYGV-ELDGRIDYEKVREIAKKEKPKLIVCGASAY 175
Query: 181 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 240
            R  D+ + R+IAD +GA L  D+AHI+GLV A     PF Y  VV++TTHK+LRGPRGG
Sbjct: 176 ARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTLRGPRGG 235
Query: 241 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 300
           +I    +     EL   IN+A+FPG+QGGP  H I   AV  K   S E+KVY  +V +N
Sbjct: 236 IIXTNDE-----ELAKKINSAIFPGIQGGPLXHVIAAKAVGFKFNLSDEWKVYAKQVRTN 290
Query: 301 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-K 359
            + LA+ L +  +KLVS G+DNHLVL         G   +  L  A IT NKN+VPG+ +
Sbjct: 291 AQVLANVLXDRKFKLVSDGTDNHLVLXSFLDREFSGKDADLALGNAGITANKNTVPGEIR 350
Query: 360 SALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 391
           S  +  G+R+G+PA+T RGF EKE   ++++I
Sbjct: 351 SPFITSGLRLGTPALTARGFKEKEXEIVSNYI 382

>pdb|3GBX|A Chain A, Serine Hydroxymethyltransferase From Salmonella Typhimurium Length = 420

Iteration: 1
 Score =  332 bits (852), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 193/387 (49%), Positives = 247/387 (63%), Gaps = 14/387 (3%)
Query: 5   NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
           + E+ +   +EK RQ + +ELIASEN+TS  V +A GS LTNKY+EG PGKRYYGG EY+
Sbjct: 15  DAELWQAXEQEKVRQEEHIELIASENYTSPRVXQAQGSQLTNKYAEGYPGKRYYGGCEYV 74
Query: 65  DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
           D +E L   RA   F  D      NVQP SGS ANF VYTA+L+P D ++G +L  GGHL
Sbjct: 75  DVVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLQPGDTVLGXNLAQGGHL 130
Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
           +HG  +P   V+ +   +  +PY +DES G +DYD   K A   +PK II G SAY    
Sbjct: 131 THG--SP---VNFSGKLYNIVPYGIDES-GKIDYDEXAKLAKEHKPKXIIGGFSAYSGVV 184
Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
           D+ + R+IAD++GA L +D AH++GL+AA V  +P  +  VVTTTTHK+L GPRGG+I  
Sbjct: 185 DWAKXREIADSIGAYLFVDXAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILA 244
Query: 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
           K       EL   +N+AVFP  QGGP  H I G AV LK A  PEFKVYQ +V  N +A 
Sbjct: 245 KGGDE---ELYKKLNSAVFPSAQGGPLXHVIAGKAVALKEAXEPEFKVYQQQVAKNAKAX 301
Query: 305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALV 363
               +  GYK+VSGG++NHL L+DL    + G   +  L  A+IT+NKNSVP D KS  V
Sbjct: 302 VEVFLNRGYKVVSGGTENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFV 361
Query: 364 PGGIRIGSPAMTTRGFSEKEFVAIADF 390
             GIRIGSPA+T RGF E E   +A +
Sbjct: 362 TSGIRIGSPAVTRRGFKEAEVKELAGW 388

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	447
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	0.0
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	0.0
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	0.0
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	0.0
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	0.0
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	0.0
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	0.0
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	0.0
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	2e-13
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	6e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* Length = 483

 Score =  809 bits (2093), Expect = 0.0
 Identities = 270/451 (59%), Positives = 329/451 (72%), Gaps = 9/451 (1%)

Query: 6   PEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYID 65
            EV +II KE  RQ   LELIASENF SRAV+EA+GSCL NKYS G PG+RYYGG E+ID
Sbjct: 30  AEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHID 89

Query: 66  ELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLS 125
           ELETLCQKRAL A+ LD   WGVNVQP SGSPANF VYTA+++PH RIMGLDLP GGHL+
Sbjct: 90  ELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLT 149

Query: 126 HGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFD 185
           HGFMT K+++S TSI+FESM Y+++  TG +DYD LE+ A LF PKLIIAG S Y R+ D
Sbjct: 150 HGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCYSRNLD 209

Query: 186 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFK 245
           Y R+R+IAD  GA LM DMAHISGLV A VV  PF++C VVTTTTHK+LRG R GMIF++
Sbjct: 210 YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYR 269

Query: 246 KDP---------VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK 296
           +            +   LES IN+AVFPGLQGGPHNH I G+AV LK A +PEFK YQ +
Sbjct: 270 RGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQ 329

Query: 297 VVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVP 356
           VV+NCRAL++ LVELGYK+V+GGSDNHL+LVDLR  G DG R EK+L+  SI  NKN+ P
Sbjct: 330 VVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCP 389

Query: 357 GDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNF 416
           GDKSAL P G+R+G+PA+T+RG  EK+F  +A FIH G+E+T++ +              
Sbjct: 390 GDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATLKEFKE 449

Query: 417 VTSPNFSLMNNVADLRGRVEALTTQFPIPGV 447
             + +      V  LR  VE+    FP+PG+
Sbjct: 450 KLAGDEKHQRAVRALRQEVESFAALFPLPGL 480

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} SCOP: c.67.1.4 PDB: 3ou5_A Length = 490

 Score =  807 bits (2087), Expect = 0.0
 Identities = 267/450 (59%), Positives = 335/450 (74%), Gaps = 12/450 (2%)

Query: 6   PEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYID 65
           PE+ E++ +EK+RQ + LELIASENF SRA +EA+GSCL NKYSEG PGKRYYGG E +D
Sbjct: 40  PEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVD 99

Query: 66  ELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLS 125
           E+E LCQ+RAL AF+LD  +WGVNVQP SGSPAN  VYTA+L+PHDRIMGLDLP GGHL+
Sbjct: 100 EIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLT 159

Query: 126 HGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFD 185
           HG+M+  +R+S TSI+FESMPY+L+  TGL+DY+ L  TA LFRP+LIIAG SAY R  D
Sbjct: 160 HGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYARLID 219

Query: 186 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFK 245
           Y RMR++ D V A L+ DMAHISGLVAA V+  PFK+ D+VTTTTHK+LRG R G+IF++
Sbjct: 220 YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIFYR 279

Query: 246 KDP---------VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK 296
           K            +    E  IN AVFP LQGGPHNH I  +AV LK A +P F+ Y  +
Sbjct: 280 KGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQ 339

Query: 297 VVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVP 356
           V+ N RA+A  L+E GY LVSGG+DNHLVLVDLRP G+DGAR E++L++ SIT NKN+ P
Sbjct: 340 VLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCP 399

Query: 357 GDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNF 416
           GD+SA+ PGG+R+G+PA+T+R F E +F  + DFI EGV I LE K   + +KLQDF +F
Sbjct: 400 GDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKS--KTAKLQDFKSF 457

Query: 417 VTSPNFSLMNNVADLRGRVEALTTQFPIPG 446
           +   +      +A+LR RVE     FP+PG
Sbjct: 458 LLK-DSETSQRLANLRQRVEQFARAFPMPG 486

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} Length = 407

 Score =  572 bits (1477), Expect = 0.0
 Identities = 200/441 (45%), Positives = 259/441 (58%), Gaps = 43/441 (9%)

Query: 6   PEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYID 65
             + E+I  E++RQ + LELIASENF S+ V EAVGS LTNKY+EG PG RYYGG E ID
Sbjct: 9   EALFELIALEEKRQREGLELIASENFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVID 68

Query: 66  ELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLS 125
            +E+L  +RA A F         NVQP SGS AN  VY A+++P D +MG+DL  GGHL+
Sbjct: 69  RVESLAIERAKALFGAAW----ANVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGGHLT 124

Query: 126 HGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFD 185
           HG    +   SG    ++ + Y +   T L+D + + + A+  RPK+I+AGASAYPR +D
Sbjct: 125 HGS---RVNFSG--KLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASAYPRFWD 179

Query: 186 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFK 245
           +   R+IAD VGA L++DMAH +GLVAA +  +P  Y  VVT+TTHK+LRGPRGG+I   
Sbjct: 180 FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRGGLILSN 239

Query: 246 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA 305
                  EL   I+  +FPG+QGGP  H I G AV    A  PEFK Y   VV N + LA
Sbjct: 240 DP-----ELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLA 294

Query: 306 SRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVP 364
             L   GY++V+GG+DNHL LVDLRP G+ G   E+ LD   IT+NKN++P D K   V 
Sbjct: 295 EELARRGYRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVT 354

Query: 365 GGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSL 424
            GIRIG+PA+TTRGF+ +E   +A+ I       L                         
Sbjct: 355 SGIRIGTPAITTRGFTPEEMPLVAELIDR----ALLEG---------------------- 388

Query: 425 MNNVADLRGRVEALTTQFPIP 445
                 LR  V  L    P+P
Sbjct: 389 --PSEALREEVRRLALAHPMP 407

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} PDB: 1dfo_A* 3g8m_A* 1eqb_A* Length = 420

 Score =  571 bits (1474), Expect = 0.0
 Identities = 199/442 (45%), Positives = 267/442 (60%), Gaps = 38/442 (8%)

Query: 6   PEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYID 65
            E+ + + +EK RQ + +ELIASEN+TS  VM+A GS LTNKY+EG PGKRYYGG EY+D
Sbjct: 16  AELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVD 75

Query: 66  ELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLS 125
            +E L   RA   F  D      NVQP SGS ANF VYTA+L+P D ++G++L  GGHL+
Sbjct: 76  VVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLT 131

Query: 126 HGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFD 185
           HG        SG    +  +PY +DE +G +DYD + K A   +PK+II G SAY    D
Sbjct: 132 HG---SPVNFSG--KLYNIVPYGIDE-SGKIDYDEMAKLAKEHKPKMIIGGFSAYSGVVD 185

Query: 186 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFK 245
           + +MR+IAD++GA L +DMAH++GL+AA V  +P  +  VVTTTTHK+L GPRGG+I  K
Sbjct: 186 WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAK 245

Query: 246 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA 305
                  EL   +N+AVFP  QGGP  H I G AV LK A  PEFKVYQ +V  N +A+ 
Sbjct: 246 GG---DEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMV 302

Query: 306 SRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVP 364
              +  GYK+VSGG++NHL L+DL    + G   +  L  A+IT+NKNSVP D KS  V 
Sbjct: 303 EVFLNRGYKVVSGGTENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVT 362

Query: 365 GGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSL 424
            GIRIGSPA+T RGF E E   +A ++ + ++                        N + 
Sbjct: 363 SGIRIGSPAVTRRGFKEAEVKELAGWMCDVLD------------------------NIND 398

Query: 425 MNNVADLRGRVEALTTQFPIPG 446
              +  ++ +V  +  +FP+  
Sbjct: 399 EATIERVKAKVLDICARFPVYA 420

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... Length = 405

 Score =  568 bits (1466), Expect = 0.0
 Identities = 193/389 (49%), Positives = 254/389 (65%), Gaps = 16/389 (4%)

Query: 6   PEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYID 65
           P+V   I +E++RQ   +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG EY+D
Sbjct: 9   PQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVD 68

Query: 66  ELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLS 125
            +E L ++RA   F  +      NVQP SG+ AN  VY  +L+  D ++G++L HGGHL+
Sbjct: 69  IVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLT 124

Query: 126 HGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFD 185
           HG       V+ + + +  + Y +D  T ++DYD + + A L RPKLI+A A+AYPR  D
Sbjct: 125 HGS-----PVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAAAAYPRIID 179

Query: 186 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFK 245
           + + R+IAD VGA LM+DMAHI+GLVAA +  +P  Y   VTTTTHK+LRGPRGGMI  +
Sbjct: 180 FAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQ 239

Query: 246 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA 305
           +      +    I+ A+FPG+QGGP  H I   AV    A   +FK Y  +VV N + LA
Sbjct: 240 E------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLA 293

Query: 306 SRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVP 364
           S L   G+ LVSGG+DNHL+LVDLRP  + G   EK+LD   IT+NKN++P D +S  V 
Sbjct: 294 SALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVT 353

Query: 365 GGIRIGSPAMTTRGFSEKEFVAIADFIHE 393
            GIRIG+ A+TTRGF  +E   IA  I  
Sbjct: 354 SGIRIGTAAVTTRGFGLEEMDEIAAIIGL 382

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} Length = 417

 Score =  568 bits (1467), Expect = 0.0
 Identities = 188/440 (42%), Positives = 262/440 (59%), Gaps = 40/440 (9%)

Query: 6   PEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYID 65
            E+ ++  KE ERQ + LE+IASENFT   VME +GS LTNKY+EG PGKRYYGG E++D
Sbjct: 11  KEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVD 70

Query: 66  ELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLS 125
           E+ETL  +R    FN        NVQP SGS AN  VY A++ P D+I+G+DL HGGHL+
Sbjct: 71  EIETLAIERCKKLFNCKF----ANVQPNSGSQANQGVYAALINPGDKILGMDLSHGGHLT 126

Query: 126 HGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFD 185
           HG    K   SG    +ES  Y ++   G +DY+ + + A   +PKLI+ GASAY R  D
Sbjct: 127 HG---AKVSSSG--KMYESCFYGVEL-DGRIDYEKVREIAKKEKPKLIVCGASAYARVID 180

Query: 186 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFK 245
           + + R+IAD +GA L  D+AHI+GLV A     PF Y  VV++TTHK+LRGPRGG+I   
Sbjct: 181 FAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTLRGPRGGIIMTN 240

Query: 246 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA 305
            +     EL   IN+A+FPG+QGGP  H I   AV  K   S E+KVY  +V +N + LA
Sbjct: 241 DE-----ELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLA 295

Query: 306 SRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVP 364
           + L++  +KLVS G+DNHLVL+        G   +  L  A IT NKN+VPG+ +S  + 
Sbjct: 296 NVLMDRKFKLVSDGTDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPFIT 355

Query: 365 GGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSL 424
            G+R+G+PA+T RGF EKE   ++++I + ++                        + + 
Sbjct: 356 SGLRLGTPALTARGFKEKEMEIVSNYIADILD------------------------DVNN 391

Query: 425 MNNVADLRGRVEALTTQFPI 444
                +++  ++ L + F I
Sbjct: 392 EKLQENIKQELKKLASNFII 411

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} Length = 425

 Score =  569 bits (1468), Expect = 0.0
 Identities = 202/440 (45%), Positives = 262/440 (59%), Gaps = 34/440 (7%)

Query: 6   PEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYID 65
             V   I KE ERQ   +ELIASEN  SRAV++A GS LTNKY+EG PGKRYYGG E+ D
Sbjct: 18  ASVRGAILKELERQQSQVELIASENIVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFAD 77

Query: 66  ELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLS 125
           E+E L  +R    FN        NVQP SG+ AN  V  A+ KP D ++G+ L  GGHL+
Sbjct: 78  EVEALAIERVKRLFNAGH----ANVQPHSGAQANGAVMLALAKPGDTVLGMSLDAGGHLT 133

Query: 126 HGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFD 185
           HG    K  +SG   +F ++ Y +   T L+DYD +E  A   +P LIIAG SAYPR  D
Sbjct: 134 HGA---KPALSG--KWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAYPRKLD 188

Query: 186 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFK 245
           + R R IAD+VGA LM+DMAHI+G++AA   A+P ++  VVT+TTHK+LRGPRGG +   
Sbjct: 189 FARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLRGPRGGFVLTN 248

Query: 246 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA 305
            +     E+   IN+AVFPGLQGGP  H I G AV    A + +FK Y ++V++N +AL 
Sbjct: 249 DE-----EIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALG 303

Query: 306 SRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVP 364
             L   G  LV+GG+DNHL+LVDLRP G+ GA+VE+ L+ A IT NKN +P D +   + 
Sbjct: 304 DVLKAGGVDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTIT 363

Query: 365 GGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSL 424
            GIR+G+PA TTRGF   EF  +   I E      EA +                     
Sbjct: 364 SGIRLGTPAGTTRGFGAAEFREVGRLILE----VFEALRTNPEGDHA------------- 406

Query: 425 MNNVADLRGRVEALTTQFPI 444
                 +R  + AL  +FPI
Sbjct: 407 --TEQRVRREIFALCERFPI 424

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} Length = 447

 Score =  566 bits (1460), Expect = 0.0
 Identities = 197/445 (44%), Positives = 265/445 (59%), Gaps = 46/445 (10%)

Query: 6   PEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYID 65
           P++ E++ KE  RQ  +LE+IASENF  RAV++A GS LTNKY+EGLPG+RYYGG E++D
Sbjct: 31  PDIAELLAKELGRQRDTLEMIASENFVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVD 90

Query: 66  ELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLS 125
            +E L + RA A F  +      NVQP SG+ AN  V  A++ P +R++GLDL +GGHL+
Sbjct: 91  VVENLARDRAKALFGAEF----ANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLT 146

Query: 126 HGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFD 185
           HG    +   SG    +E+  Y +D +T L+D D +  TA+ FRPK+IIAG SAYPR  D
Sbjct: 147 HGM---RLNFSGK--LYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAYPRVLD 201

Query: 186 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFK 245
           +   R IAD VGA L++DMAH +GLVAA +   P  + DVV+TT HK+L G R G+I  K
Sbjct: 202 FAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVHKTLGGGRSGLIVGK 261

Query: 246 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA 305
           +      +   AIN+AVFPG QGGP  H I G AV LK A +PEF   Q + +S  R +A
Sbjct: 262 Q------QYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIA 315

Query: 306 SRLV-----ELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-K 359
            RL+     + G  +VSGG+D HLVLVDLR   +DG   E +L    IT+N+N+VP D +
Sbjct: 316 DRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPR 375

Query: 360 SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTS 419
             +V  G+RIG+PA+ TRGF + EF  +AD I   +                        
Sbjct: 376 PPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALATGSSVD----------------- 418

Query: 420 PNFSLMNNVADLRGRVEALTTQFPI 444
                   V+ L+ R   L   FP+
Sbjct: 419 --------VSALKDRATRLARAFPL 435

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* Length = 456

 Score = 70.9 bits (173), Expect = 2e-13
 Identities = 56/346 (16%), Positives = 99/346 (28%), Gaps = 55/346 (15%)

Query: 16  KERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRA 75
           +E  + +  L + + +          +    +++  + G   Y G+E    LE     R 
Sbjct: 29  QEAGYNTFLLNSKDIYIDLLTDSGTNAMSDKQWAGMMMGDEAYAGSENFYHLE-----RT 83

Query: 76  LAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMG---LDLPHGGHLSHGFMTPK 132
           +      ++    +     G  A   +    +KP   + G             +G     
Sbjct: 84  VQELFGFKHIVPTH----QGRGAENLLSQLAIKPGQYVAGNMYFTTTRYHQEKNGA---- 135

Query: 133 RRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI----------IAGASAYPR 182
                                G +D   L+K       + I          +AG      
Sbjct: 136 -VFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSM 194

Query: 183 DFDYPRMRQIADAVGALLMMDMAHISG--------------LVAASVVADPFKYCDVVTT 228
             +   +R++ +A G  +  D                       A +V + F Y D  T 
Sbjct: 195 A-NMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTM 253

Query: 229 TTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGL----QGGPHNHTIGGLAVCLKH 284
           +  K      GG +    D     E+ S+    V         GG     +  +A+ L+ 
Sbjct: 254 SGKKDCLVNIGGFLCMNDD-----EMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLRE 308

Query: 285 AQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLR 330
           A   E   Y    V   R L  +L   G  +V      H V +D R
Sbjct: 309 AMQYE---YIEHRVKQVRYLGDKLKAAGVPIVE-PVGGHAVFLDAR 350

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 Length = 467

 Score = 50.6 bits (120), Expect = 6e-07
 Identities = 46/269 (17%), Positives = 78/269 (28%), Gaps = 35/269 (13%)

Query: 94  SGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKR-RVSGTSIYFESMPYRLDES 152
            G  A   ++  +LK   +      P      H   T     ++G            D  
Sbjct: 99  QGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSE 158

Query: 153 T-----GLVDYDMLEKTAILFRPKLIIA---------GASAYPRDFDYPR-MRQIADAVG 197
           T     G  D   L++  I       I           A   P      + + +IA   G
Sbjct: 159 TYDDWKGDFDIKKLKE-NIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHG 217

Query: 198 ALLMMDMAHI--------------SGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIF 243
             ++MD A                       V+ D +KY D +T +  K      GG++ 
Sbjct: 218 IFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVA 277

Query: 244 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRA 303
            + +  +                 GG     +  +   L+     E   Y +  +   + 
Sbjct: 278 IRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEE---YLHYRIGQVKY 334

Query: 304 LASRLVELGYKLVSGGSDNHLVLVDLRPM 332
           L  RL E G  +    +  H V VD + +
Sbjct: 335 LGDRLREAGIPIQY-PTGGHAVFVDCKKL 362

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 8e-07
 Identities = 57/404 (14%), Positives = 114/404 (28%), Gaps = 123/404 (30%)

Query: 7   EVCEIITKEKERQFKSLELIAS-ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI- 64
           E  + I   K+    +L L  +  +     V + V   L   Y             +++ 
Sbjct: 49  EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY-------------KFLM 95

Query: 65  DELETLCQKRAL--AAFNLDENKWGVNVQPLSGSPAN---FEVYTAI------LKPHDRI 113
             ++T  ++ ++    +    ++   + Q  +    N    + Y  +      L+P   +
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA--KYNVSRLQPYLKLRQALLELRPAKNV 153

Query: 114 ----MG------------LDLPHGGHLSHG-F-MTPKRRVSGTSI--YFESMPYRLDES- 152
               +             L       +    F +  K   S  ++    + + Y++D + 
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 153 TGLVDYDMLEKTAILFRPKLIIAGASAYPRDF----DYPRMRQIADAVGALLMMDMAHIS 208
           T   D+            KL I    A  R       Y            LL++   +  
Sbjct: 214 TSRSDHS--------SNIKLRIHSIQAELRRLLKSKPYEN---------CLLVLL--N-- 252

Query: 209 GLVAASVVADPFKY-CDVVTTT--------------THKSLRGPRGGMIFFKKDPVLGVE 253
             V  +   + F   C ++ TT              TH SL            D V  + 
Sbjct: 253 --VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT---LTPDEVKSL- 306

Query: 254 LESAINNAVF--P--GLQGGPHNHTIGGLAVCLKHAQSPEFKV-YQNKVVSNCRALASRL 308
           L   ++      P   L   P         + +      +    + N    NC  L + +
Sbjct: 307 LLKYLDCRPQDLPREVLTTNP-------RRLSIIAESIRDGLATWDNWKHVNCDKL-TTI 358

Query: 309 VELGYKLVSGGSDNHLVLVDLRPM----GI--DGARV-EKILDM 345
           +E           N L   + R M     +    A +   +L +
Sbjct: 359 IESSL--------NVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	447
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	100.0
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	100.0
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	100.0
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	100.0
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	100.0
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	100.0
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	100.0
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	100.0
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	100.0
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.98
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.97
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.97
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.97
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.97
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.97
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.97
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.97
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.97
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.97
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.97
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.97
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.97
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.97
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.97
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.97
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.97
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.97
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.96
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.96
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.96
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.96
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.96
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.96
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.96
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.96
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.96
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	99.96
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.96
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.96
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.96
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	99.96
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.96
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.96
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.96
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	99.96
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	99.95
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	99.95
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.95
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.95
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.95
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.95
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.95
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	99.95
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.95
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.95
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.95
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	99.95
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.95
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.95
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	99.95
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.95
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.95
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.95
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.95
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.95
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.95
3nra_A	407	Aspartate aminotransferase; structural genomics, j	99.95
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.95
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	99.95
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	99.95
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	99.95
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.95
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.95
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.95
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.95
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	99.95
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	99.95
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.95
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.95
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	99.95
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.95
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	99.94
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.94
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.94
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	99.94
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	99.94
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.94
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	99.94
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.94
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.94
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.94
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.94
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.94
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	99.94
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.94
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	99.94
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	99.94
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.94
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.94
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.94
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.94
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.94
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.94
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.94
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.94
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	99.94
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.93
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	99.93
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.93
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	99.93
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.93
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.93
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.93
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.93
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.93
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	99.93
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.93
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.93
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.93
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.93
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.93
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.93
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.93
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.93
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.93
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.93
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.93
1svv_A	359	Threonine aldolase; structural genomics, structura	99.93
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.92
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.92
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.92
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.92
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.92
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.92
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.92
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.92
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.92
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.92
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.92
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.92
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.92
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.92
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.91
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.91
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.91
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.91
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.91
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.91
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.91
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.91
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.91
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.91
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.91
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.91
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.91
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.91
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.9
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.9
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.9
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.9
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.9
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.9
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.9
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.9
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	99.83
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.89
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.89
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.89
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.89
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.89
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.89
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.89
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.89
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.89
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.88
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.88
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.88
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.88
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.88
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.88
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.88
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.87
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.87
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.87
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.87
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.87
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.87
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.86
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.86
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.86
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.86
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.86
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.86
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	99.86
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.86
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.86
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.86
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.86
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.85
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.85
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.85
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.85
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.85
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.84
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.84
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.83
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.83
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.83
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.83
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.83
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.82
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.82
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.82
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.82
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	99.82
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.81
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.81
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.8
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.8
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.8
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.8
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.79
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.78
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.78
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.77
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.76
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.76
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.76
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.76
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.75
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.7
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.58
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.32
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	99.48
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	99.3
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.23

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=100.00  E-value=2.6e-102  Score=747.42  Aligned_cols=444  Identities=60%  Similarity=1.028  Sum_probs=380.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC
Q 013217            1 MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN   80 (447)
Q Consensus         1 ~~~~~~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g   80 (447)
                      |++.||||+++|++|.+||+++|+||||||++|++|++++++.|+|+|+|||||.|||+||+++|++|.+|+++++++||
T Consensus        35 l~~~Dpei~~~i~~E~~RQ~~~ieLIASEN~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~  114 (490)
T 3ou5_A           35 LSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFD  114 (490)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhCHHHHHHHHHHHHHHHcCceEecCCCcCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhC
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHH
Q 013217           81 LDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDM  160 (447)
Q Consensus        81 ~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~  160 (447)
                      +++++|++|||++||++||++++.++++|||+|+.+++.+|||++|++......++++|.+|++++|++|++++.||+|+
T Consensus       115 a~~A~w~VNVQP~SGs~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~  194 (490)
T 3ou5_A          115 LDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQ  194 (490)
T ss_dssp             CCTTTEEEECCCSSHHHHHHHHHHHHCC-CCCEECBC----------------------------CBCEETTTTEECHHH
T ss_pred             CCccccCCCCCcCCHHHHHHHHHHHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHH
Confidence            99999999999999999999999999999999999999999999999877666788999999999999999999999999


Q ss_pred             HHHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCc
Q 013217          161 LEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG  240 (447)
Q Consensus       161 l~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG  240 (447)
                      +++++.++|||+|+++.|.||+.+|++++++||++.|++|++|+||.+|+++.+++++|+++||++++||||+|+|||||
T Consensus       195 ~~~~A~~~kPklIi~G~SaY~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~ADvVTtTTHKTLrGPrGG  274 (490)
T 3ou5_A          195 LALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSG  274 (490)
T ss_dssp             HHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSSTTCSCSCE
T ss_pred             HHHHHhhcCCCeEEECCccCccccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCccccceEEeccccccccCCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeecCCc---------chhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC
Q 013217          241 MIFFKKDPV---------LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL  311 (447)
Q Consensus       241 ~i~~~~~~~---------~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  311 (447)
                      +|+++++..         ..+++.+++++++||+.||+|++|.+||+++|++++.+++|++|.+++++|++.|++.|.+.
T Consensus       275 ~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~  354 (490)
T 3ou5_A          275 LIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER  354 (490)
T ss_dssp             EEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC
Confidence            999997411         11257889999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217          312 GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  391 (447)
Q Consensus       312 g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i  391 (447)
                      |+++++++|++|++++|+++.++++.++++.|++.||.+|++.+|+|.+|+.++||||||+++|+|||+++||++++++|
T Consensus       355 G~~vvsGgTdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I  434 (490)
T 3ou5_A          355 GYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFI  434 (490)
T ss_dssp             TCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHH
T ss_pred             CCeeecCCCCceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccccchhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCCC
Q 013217          392 HEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV  447 (447)
Q Consensus       392 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~~~  447 (447)
                      .+++....+++.+.  .++++|+..+..+. +..+.++++|++|.+||++||+|+|
T Consensus       435 ~~~l~~~~~~~~~~--~kl~~f~~~~~~~~-~~~~~i~~lr~~V~~l~~~FP~pg~  487 (490)
T 3ou5_A          435 DEGVNIGLEVKSKT--AKLQDFKSFLLKDS-ETSQRLANLRQRVEQFARAFPMPGF  487 (490)
T ss_dssp             HHHHHHHHHHHHTC--CSHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHTTSCCSSC
T ss_pred             HHHHHhhhhhhhhh--hhhHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHhCCCCCC
Confidence            99999888887654  35677766553222 1124789999999999999999986

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=100.00  E-value=7.5e-75  Score=583.48  Aligned_cols=443  Identities=60%  Similarity=1.028  Sum_probs=361.5

Q ss_pred             CCCCHHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC
Q 013217            2 QACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL   81 (447)
Q Consensus         2 ~~~~~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~   81 (447)
                      ++.||+|+++|.+|.+||++.|+|++|+|++|++|+++|.+.++++|++|||++|||+|+++++++|+.++++++++||+
T Consensus        36 ~~~d~~~~~~~~~e~~rq~~~i~lias~n~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~  115 (490)
T 2a7v_A           36 SDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDL  115 (490)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTC
T ss_pred             hhcCHHHHHHHHHHHHHHHcCceEECCCCCCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCC
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHH
Q 013217           82 DENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDML  161 (447)
Q Consensus        82 ~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l  161 (447)
                      ++++|.++|+++||++||.+++.++++|||+|+++++.|++|++|++......+.+.|..++.++++++++++.+|+++|
T Consensus       116 ~~~~~~~~v~~~sGt~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~l  195 (490)
T 2a7v_A          116 DPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQL  195 (490)
T ss_dssp             CTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC-------------------------------CCBCTTTCSBCHHHH
T ss_pred             CcccCceEEeCCchHHHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHH
Confidence            98777668888999999999999999999999999999999998876433234456777677788888877889999999


Q ss_pred             HHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCce
Q 013217          162 EKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGM  241 (447)
Q Consensus       162 ~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG~  241 (447)
                      ++++.+++||+|+++.++||+..|+++|+++|++||+++++|++|++|+++.+..+.+++++|++++|+||+|+||+||+
T Consensus       196 e~~l~~~~~klIi~~~s~~~~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~~aDiv~~S~hK~l~Gp~GG~  275 (490)
T 2a7v_A          196 ALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSGL  275 (490)
T ss_dssp             HHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCSCSCEE
T ss_pred             HHHHhhcCCcEEEEcCCCCCCcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCCCCCEEEECCcccCccccchh
Confidence            99998778999999988999989999999999999999999999999998888777777789999999999999999999


Q ss_pred             EEeecCCc---------chhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCC
Q 013217          242 IFFKKDPV---------LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG  312 (447)
Q Consensus       242 i~~~~~~~---------~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  312 (447)
                      ++++++..         ..+++.+++++..+++.+|+|+++.++++++|++++..++++++.+++.+|+++|++.|.+.|
T Consensus       276 i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~G  355 (490)
T 2a7v_A          276 IFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERG  355 (490)
T ss_dssp             EEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             eeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99987310         001366788888899999999999999999999998877889999999999999999999999


Q ss_pred             cEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHH
Q 013217          313 YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH  392 (447)
Q Consensus       313 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~  392 (447)
                      ++++.+++++|++++++++.++++.++.+.|+++||.++.+.+|++.+|+.+++||+|++++|+||++++||++++++|.
T Consensus       356 ~~v~~~~t~t~lv~vdl~~~g~~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~  435 (490)
T 2a7v_A          356 YSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFID  435 (490)
T ss_dssp             CEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHH
T ss_pred             cEEecCCCCCeEEEEEeCCCCCCHHHHHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHH
Confidence            99987667899999999888888999999999999999999999988788889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccchhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCCC
Q 013217          393 EGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV  447 (447)
Q Consensus       393 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~~~  447 (447)
                      +++.....++.++  +++++|++.+.+++ +..+.+.++|++|.+||++||+|+|
T Consensus       436 ~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~  487 (490)
T 2a7v_A          436 EGVNIGLEVKSKT--AKLQDFKSFLLKDS-ETSQRLANLRQRVEQFARAFPMPGF  487 (490)
T ss_dssp             HHHHHHHHHHHHC--CSHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHTTSCCSSC
T ss_pred             HHHHhhhhhhhhh--chhhHHHhhhccCh-hhHHHHHHHHHHHHHHHHhCCCCCc
Confidence            9999998888776  45789988876432 1113588999999999999999985

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=100.00  E-value=2.1e-66  Score=526.60  Aligned_cols=444  Identities=61%  Similarity=1.021  Sum_probs=383.8

Q ss_pred             CCCHHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC
Q 013217            3 ACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD   82 (447)
Q Consensus         3 ~~~~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~   82 (447)
                      +.||++++++.+|.+||++.|+|++|+|++|+.|++++.+.+.++|.+|||+.++|++++..+++|+.++++++++||++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~i~L~a~e~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~  106 (483)
T 1rv3_A           27 DSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLD  106 (483)
T ss_dssp             HHCHHHHHHHHHHHHHHHSSEECCTTCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             hcCHHHHHHHHHHHHHhhcCeEEEcCCCCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCC
Confidence            56999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHH
Q 013217           83 ENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLE  162 (447)
Q Consensus        83 ~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~  162 (447)
                      +++|.++|+++||+++|.+++.++++|||+|++++++|++|++|++......+.+.|..++.++++++++++.+|+++|+
T Consensus       107 ~~~~~~~V~~~sGs~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le  186 (483)
T 1rv3_A          107 PQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLE  186 (483)
T ss_dssp             TTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHH
T ss_pred             cccCceEEEECCcHHHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHH
Confidence            87665678899999999999999999999999999999999999887665566777776788888888778899999999


Q ss_pred             HHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCceE
Q 013217          163 KTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMI  242 (447)
Q Consensus       163 ~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG~i  242 (447)
                      +++++.+||+|+++.++++...|+++|+++|+++|+++++|++|+.|+++.+..++|++++|++++|+||+|+||+||++
T Consensus       187 ~~i~~~~tklIi~~~sn~~~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~~~div~~s~~K~l~GprgG~i  266 (483)
T 1rv3_A          187 ENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAGMI  266 (483)
T ss_dssp             HHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGGGCCCSCEEE
T ss_pred             HHHhhcCCcEEEEeCCcCCCcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCCCCcEEEecCcccCCCCCceEE
Confidence            99985599999996666677889999999999999999999999999998888777777899999999999999999999


Q ss_pred             EeecCCc---------chhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCc
Q 013217          243 FFKKDPV---------LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGY  313 (447)
Q Consensus       243 ~~~~~~~---------~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  313 (447)
                      +++++..         ..+++.+.++...+++.+|+|+.+.++++++|++.+...+++++.+++.++++++.+.|.+.|+
T Consensus       267 ~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  346 (483)
T 1rv3_A          267 FYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGY  346 (483)
T ss_dssp             EEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9997411         0002455666667788899999999999999999987778899999999999999999999999


Q ss_pred             EeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217          314 KLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       314 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~  393 (447)
                      +++.+++++|+++++++..++++.++.+.|.+.||.++.+++|++..++.++++|||++.+++|||+++|+++++++|++
T Consensus       347 ~~~~~~~~~~~~~v~~~~~g~~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~  426 (483)
T 1rv3_A          347 KIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHR  426 (483)
T ss_dssp             EEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             EeccCCCCCceEEEeccCCCCCHHHHHHHHHhCCcEEecCCCCCCCcCCCCceEEeecCCcccCCCCHHHHHHHHHHHHH
Confidence            98876667788899987767788899999999999999777787655566789999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhc-cccchhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCCC
Q 013217          394 GVEITLEAKKLVQ-GSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV  447 (447)
Q Consensus       394 ~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~~~  447 (447)
                      ++.....++.+.. .+.+++|++.+.++. ...+.++++|++|.+||++||+|+|
T Consensus       427 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  480 (483)
T 1rv3_A          427 GIELTVQIQDDTGPRATLKEFKEKLAGDE-KHQRAVRALRQEVESFAALFPLPGL  480 (483)
T ss_dssp             HHHHHHHHHHTTCSSCCHHHHHHHHHSCH-HHHHHHHHHHHHHHHHHTTSCCCSS
T ss_pred             HHHhccchhccccccchhhHHHHhhcccc-chhHHHHHHHHHHHHHHHhCCCCCc
Confidence            9987544443332 225678888886432 0112688999999999999999975

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=100.00  E-value=2e-53  Score=427.95  Aligned_cols=403  Identities=49%  Similarity=0.790  Sum_probs=341.7

Q ss_pred             CCCHHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC
Q 013217            3 ACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD   82 (447)
Q Consensus         3 ~~~~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~   82 (447)
                      ..||+++..+.+|.+||.+.|+|++++|+++|.|++++.+.+.++|..|||+.+|+.|+...+.+|+.+++++++++|++
T Consensus        28 ~~~~~i~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~  107 (447)
T 3h7f_A           28 EVDPDIAELLAKELGRQRDTLEMIASENFVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAE  107 (447)
T ss_dssp             HHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS
T ss_pred             hCCHHHHHHHHHHHHHHhCceeEecCCCCCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCC
Confidence            46999999999999999999999999999999999999999988999999999999999999999988878999999998


Q ss_pred             CCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHH
Q 013217           83 ENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLE  162 (447)
Q Consensus        83 ~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~  162 (447)
                      .    ++++++||++|+..++.++++|||+|+++++.|++|+.++.     .+...|..+..++++++++++.+|+++++
T Consensus       108 ~----~~v~~~sGs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~d~~~l~  178 (447)
T 3h7f_A          108 F----ANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHGM-----RLNFSGKLYENGFYGVDPATHLIDMDAVR  178 (447)
T ss_dssp             E----EECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTC-----TTSHHHHSSEEEEECCCTTTCSCCHHHHH
T ss_pred             c----eEEEeCCHHHHHHHHHHHhcCCCCEEEecCcccccccchhh-----hhhhcCCeeEEEEcCcCcccCCcCHHHHH
Confidence            6    35657999999999999999999999999999988766553     22345555677777777677889999999


Q ss_pred             HHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCceE
Q 013217          163 KTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMI  242 (447)
Q Consensus       163 ~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG~i  242 (447)
                      +++...+|++|+++.++||+..++++|+++|+++|+++++|++|+.|++..+..+.+++++|++++|+||+|+||+||++
T Consensus       179 ~~i~~~~~~~i~~~~~~~~~~~~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~~~~di~~~s~sK~l~G~~gG~i  258 (447)
T 3h7f_A          179 ATALEFRPKVIIAGWSAYPRVLDFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVHKTLGGGRSGLI  258 (447)
T ss_dssp             HHHHHHCCSEEEEECSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSGGGCCCSCEEE
T ss_pred             HHHHhcCCeEEEEcCCCCCCccCHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCCCCCcEEEecCCcCCCCCCeEEE
Confidence            99976689999998888888779999999999999999999999888877766666666789999999999999999999


Q ss_pred             EeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-----CcEeee
Q 013217          243 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-----GYKLVS  317 (447)
Q Consensus       243 ~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~  317 (447)
                      ++++      ++.+.+.....++.+|+++...++++++++..+...+++++.+++.++++++.+.|.+.     |++++.
T Consensus       259 ~~~~------~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~  332 (447)
T 3h7f_A          259 VGKQ------QYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVS  332 (447)
T ss_dssp             EECG------GGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGG
T ss_pred             EECH------HHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEec
Confidence            9988      67788877777888888888888888888888776678889999999999999999887     999876


Q ss_pred             CCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC-CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          318 GGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       318 ~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~-~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      +++++++++++++..+++...+.+.|+++||.++.+.+|++. ++..++++|+|++.++++|++++|+++++++|.+++.
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~  412 (447)
T 3h7f_A          333 GGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALA  412 (447)
T ss_dssp             GSCSSSEEEEECTTSSCCHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEcCCCCCCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHh
Confidence            556788888998877778888999999999999877777753 4566789999999999999999999999999999887


Q ss_pred             HHHHHHHhhccccchhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCC
Q 013217          397 ITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIP  445 (447)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~  445 (447)
                      ...                    +.     .+++++++|.+|+++||++
T Consensus       413 ~~~--------------------~~-----~~~~~~~~v~~~~~~~~~~  436 (447)
T 3h7f_A          413 TGS--------------------SV-----DVSALKDRATRLARAFPLY  436 (447)
T ss_dssp             SGG--------------------GC-----CHHHHHHHHHHHHHHSCSS
T ss_pred             ccC--------------------ch-----hHHHHHHHHHHHHHhCCCC
Confidence            430                    12     2789999999999999994

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=100.00  E-value=1.1e-50  Score=404.19  Aligned_cols=406  Identities=46%  Similarity=0.771  Sum_probs=338.7

Q ss_pred             CCCCHHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC
Q 013217            2 QACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL   81 (447)
Q Consensus         2 ~~~~~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~   81 (447)
                      +.+||++++.+.+|..+|.+.++|.+++|++++.|++++.+.+.+.|..||++.++|++....+.+++.+++++++++|+
T Consensus         7 ~~~~~~i~~~~~~e~~~~~~~i~l~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~   86 (417)
T 3n0l_A            7 EMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNC   86 (417)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             hhcCHHHHHHHHHHHHHHhcCeeeecccCCCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCC
Confidence            45799999999999999999999999999999999999999988888889999999999999999998899999999999


Q ss_pred             CCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHH
Q 013217           82 DENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDML  161 (447)
Q Consensus        82 ~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l  161 (447)
                      +++    +|.++||++|+..++.++++|||+|++.++.|+++..++.     .+...|..+..++++++ +++.+|+++|
T Consensus        87 ~~~----~i~~~sGt~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~-~~~~~d~~~l  156 (417)
T 3n0l_A           87 KFA----NVQPNSGSQANQGVYAALINPGDKILGMDLSHGGHLTHGA-----KVSSSGKMYESCFYGVE-LDGRIDYEKV  156 (417)
T ss_dssp             SEE----ECCCSSHHHHHHHHHHHHSCTTCEEEEECC---------------------CCSEEEEECCC-TTSSCCHHHH
T ss_pred             CCc----ceEeccHHHHHHHHHHHhcCCCCEEEecccccccccchhh-----hhhhhcceeeeEeccCC-CCCCcCHHHH
Confidence            763    4666999999999999999999999999999988765443     22344555667777777 6788999999


Q ss_pred             HHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCce
Q 013217          162 EKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGM  241 (447)
Q Consensus       162 ~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG~  241 (447)
                      ++++++.+|++|+++.++++...|+++|.++|++||+++|+|++|+.|....+..+.++..+|++++|+||+|+||+||+
T Consensus       157 ~~~i~~~~~~~v~~~~~~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~G~  236 (417)
T 3n0l_A          157 REIAKKEKPKLIVCGASAYARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTLRGPRGGI  236 (417)
T ss_dssp             HHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTTTCSEEEEESSTTTCSCSCEE
T ss_pred             HHHHHhcCCeEEEECCcccCccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccccceEEEeeCccccCCCCeeE
Confidence            99998559999999887887788999999999999999999999988888776656555578999999999999999999


Q ss_pred             EEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCC
Q 013217          242 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSD  321 (447)
Q Consensus       242 i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~  321 (447)
                      ++++++     ++.+.+.....++..++++...++++++++......+++++.+++.++++++.+.|.+.|+++..++..
T Consensus       237 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~  311 (417)
T 3n0l_A          237 IMTNDE-----ELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDRKFKLVSDGTD  311 (417)
T ss_dssp             EEESCH-----HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCS
T ss_pred             EEECCH-----HHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCceeccCCCC
Confidence            999843     787888776677777888998888888888876666778999999999999999999989988765556


Q ss_pred             CeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC-CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHHHH
Q 013217          322 NHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLE  400 (447)
Q Consensus       322 ~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~-~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~~  400 (447)
                      .+++++++...+++..++.+.|.++||.++....|+.. +++.++++|+|++.+++++++++|+++++++|+++++..  
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~~--  389 (417)
T 3n0l_A          312 NHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDV--  389 (417)
T ss_dssp             SSEEEEECTTSSSCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT--
T ss_pred             ceEEEEEcccCCCCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhcc--
Confidence            77888888776778889999999999999877667654 456667899999999999999999999999999998743  


Q ss_pred             HHHhhccccchhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCC
Q 013217          401 AKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG  446 (447)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~~  446 (447)
                                       . +.    +.+++++++|.+|+++||+|+
T Consensus       390 -----------------~-~~----~~~~~~~~~v~~~~~~~~~~~  413 (417)
T 3n0l_A          390 -----------------N-NE----KLQENIKQELKKLASNFIIYE  413 (417)
T ss_dssp             -----------------T-CH----HHHHHHHHHHHHHHTTCCCCS
T ss_pred             -----------------c-ch----hhHHHHHHHHHHHHhcCCCcc
Confidence                             1 11    368899999999999999975

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=100.00  E-value=3e-48  Score=386.86  Aligned_cols=408  Identities=48%  Similarity=0.784  Sum_probs=317.9

Q ss_pred             CCCCHHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC
Q 013217            2 QACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL   81 (447)
Q Consensus         2 ~~~~~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~   81 (447)
                      ++++|++++++.++.+++.+.+.+++++|+.+|.|.+++.+.+.+.|..||++.+++.+....+.+++.+++++++++|+
T Consensus        12 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~   91 (420)
T 3gbx_A           12 ADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGA   91 (420)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTC
T ss_pred             hhcCHHHHHHHHHHHHhhhcceeeeccCCCCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCC
Confidence            35789999999999999999999999999999999999999987788889999888888777788888888999999999


Q ss_pred             CCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHH
Q 013217           82 DENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDML  161 (447)
Q Consensus        82 ~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l  161 (447)
                      +++    .|.++||++|+..++.++++|||+|++.++.|++++.++.     .+...|..+..++++.+ +++.+|+++|
T Consensus        92 ~~~----~v~~~sGs~a~~~a~~~~~~~gd~v~~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~-~~~~~d~~~l  161 (420)
T 3gbx_A           92 DYA----NVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHGS-----PVNFSGKLYNIVPYGID-ESGKIDYDEM  161 (420)
T ss_dssp             SEE----ECCCSSHHHHHHHHHHHHCCTTCEEEEEEEC-----------------CHHHHSEEEEEEEC-TTCSCCHHHH
T ss_pred             CCc----eeEecCcHHHHHHHHHHhcCCCCEEEecchhhcceeccch-----hhhhcccceeEEeccCC-ccCCcCHHHH
Confidence            764    4556999999999999999999999999999988764443     22344555566677776 5678999999


Q ss_pred             HHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCce
Q 013217          162 EKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGM  241 (447)
Q Consensus       162 ~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG~  241 (447)
                      ++++++++|++|+++.+++|+..++++|.++|++||+++|+|++|+.|....+..+.++..+|++++|+||+++||+||+
T Consensus       162 ~~~i~~~~~~~v~~~~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~gg~  241 (420)
T 3gbx_A          162 AKLAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGPRGGL  241 (420)
T ss_dssp             HHHHHHHCCSEEEECCTTCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTTTSSEEEEESSGGGCSCSCEE
T ss_pred             HHHHHhcCCeEEEEecCccCCccCHHHHHHHHHHcCCEEEEECCcchhceecccCCcccccCCEEEeecccCCCCCCceE
Confidence            99998767999999888888888999999999999999999999988877665555555568999999999999999999


Q ss_pred             EEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCC
Q 013217          242 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSD  321 (447)
Q Consensus       242 i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~  321 (447)
                      +++++..   .++.+.+....+++.+++++...+++++.++......+++++.+++.++++++.+.|.+.|++++.++..
T Consensus       242 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~  318 (420)
T 3gbx_A          242 ILAKGGD---EELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNRGYKVVSGGTE  318 (420)
T ss_dssp             EEESSCC---HHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCS
T ss_pred             EEEcCCc---HHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCeeccCCCC
Confidence            9998621   0466667666677777888888888888888776666778889999999999999999999988765456


Q ss_pred             CeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC-CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHHHH
Q 013217          322 NHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLE  400 (447)
Q Consensus       322 ~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~-~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~~  400 (447)
                      .+++++++.+.+.+...+.+.|.++||.++....|+.. .++.+.++|++++..++++++++|+++++++|++++...  
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~~--  396 (420)
T 3gbx_A          319 NHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDNI--  396 (420)
T ss_dssp             SSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT--
T ss_pred             CeEEEEEcCCCCCCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhCc--
Confidence            77788887665667888999999999999875556543 345567899999999999999999999999999988743  


Q ss_pred             HHHhhccccchhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCC
Q 013217          401 AKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG  446 (447)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~~  446 (447)
                                       . +.    ..+++++++|.+||++||+++
T Consensus       397 -----------------~-~~----~~~~~~~~~~~~~~~~~~~~~  420 (420)
T 3gbx_A          397 -----------------N-DE----ATIERVKAKVLDICARFPVYA  420 (420)
T ss_dssp             -----------------T-CH----HHHHHHHHHHHHHHHHSCSCC
T ss_pred             -----------------c-cc----hhHHHHHHHHHHHHHhCCCCC
Confidence                             1 11    368899999999999999964

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=100.00  E-value=3.6e-47  Score=379.67  Aligned_cols=410  Identities=48%  Similarity=0.762  Sum_probs=314.2

Q ss_pred             CCCHHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC
Q 013217            3 ACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD   82 (447)
Q Consensus         3 ~~~~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~   82 (447)
                      ..+|++...+.++.+++.+.++|.+++|+.+|.|++++.+.+.+.|..|+++.+++.+....+.+++.+++++++++|.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~   94 (425)
T 3ecd_A           15 ERDASVRGAILKELERQQSQVELIASENIVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAG   94 (425)
T ss_dssp             HHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCS
T ss_pred             hhCHHHHHHHHHHHHHHhcceeeecccCCCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCC
Confidence            46889999999999999899999999999999999999999888888899998888887766677777778899999988


Q ss_pred             CCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHH
Q 013217           83 ENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLE  162 (447)
Q Consensus        83 ~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~  162 (447)
                      .    ..+.+++|++|+..++.++++|||+|++.++.|++++.++.     .....|..++.++++++++++.+|+++|+
T Consensus        95 ~----~~v~~~~Gs~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~d~~~l~  165 (425)
T 3ecd_A           95 H----ANVQPHSGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHGA-----KPALSGKWFNALQYGVSRDTMLIDYDQVE  165 (425)
T ss_dssp             E----EECCCSSHHHHHHHHHHHHCCTTCEEEEECC-----------------------CEEEEECCCTTTSSCCHHHHH
T ss_pred             C----ceeecCchHHHHHHHHHHccCCCCEEEEcccccccceecch-----hhhhcccceeeeecCCCcccCccCHHHHH
Confidence            6    24556889999999999999999999999999987543332     12244555677777777667899999999


Q ss_pred             HHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCceE
Q 013217          163 KTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMI  242 (447)
Q Consensus       163 ~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG~i  242 (447)
                      +++++.+|++|++++++||...++++|.++|++||+++|+|++|+.|....+....+++.+|++++|+||+|+||+||++
T Consensus       166 ~~i~~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~g~~  245 (425)
T 3ecd_A          166 ALAQQHKPSLIIAGFSAYPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLRGPRGGFV  245 (425)
T ss_dssp             HHHHHHCCSEEEEECSCCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCCCSCEEE
T ss_pred             HHHhhcCCcEEEEccccCCCcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchhcCcEEEecCCcccCCCCcEEE
Confidence            99986689999998888888889999999999999999999999888876655444444689999999999999999999


Q ss_pred             EeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCC
Q 013217          243 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDN  322 (447)
Q Consensus       243 ~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~  322 (447)
                      +++++     ++.+.+....+++..++++...+++++.++......+++++.+++.++++++.+.|.+.|+++..++...
T Consensus       246 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~  320 (425)
T 3ecd_A          246 LTNDE-----EIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGGVDLVTGGTDN  320 (425)
T ss_dssp             EESCH-----HHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSS
T ss_pred             EeCCH-----HHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCCc
Confidence            99863     6777777766777777888888888888887766667788899999999999999999999887654456


Q ss_pred             eeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC-CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013217          323 HLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEA  401 (447)
Q Consensus       323 ~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~-~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~~~  401 (447)
                      +++++++.+.+.+...+.+.|.++||.++....|+.. .++..+++|++++.+++++++++|+++++++|+++++...  
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~~--  398 (425)
T 3ecd_A          321 HLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEALR--  398 (425)
T ss_dssp             SEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHHH--
T ss_pred             eEEEEEeCCCCCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhccc--
Confidence            7788887655667888999999999999866556654 3455678999999999999999999999999999987531  


Q ss_pred             HHhhccccchhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCC
Q 013217          402 KKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIP  445 (447)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~  445 (447)
                        +  ++         ..+.    +.+++++++|.+||++||++
T Consensus       399 --~--~~---------~~~~----~~~~~~~~~~~~~~~~~~~~  425 (425)
T 3ecd_A          399 --T--NP---------EGDH----ATEQRVRREIFALCERFPIY  425 (425)
T ss_dssp             --H--CT---------TCCH----HHHHHHHHHHHHHHHTSCCC
T ss_pred             --c--cc---------ccCc----hhHHHHHHHHHHHHhcCCCC
Confidence              0  10         1111    36789999999999999984

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=100.00  E-value=7.3e-43  Score=346.59  Aligned_cols=401  Identities=49%  Similarity=0.807  Sum_probs=317.2

Q ss_pred             CCCHHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC
Q 013217            3 ACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD   82 (447)
Q Consensus         3 ~~~~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~   82 (447)
                      ..||++++.+.++..+++..|++..++|+.++.|++++.+.+.+.+..+||+.+++.|......+|+.+++++++++|++
T Consensus         6 ~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~   85 (407)
T 2dkj_A            6 KRDEALFELIALEEKRQREGLELIASENFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAA   85 (407)
T ss_dssp             CCCHHHHHHHHHHHHHHHTSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS
T ss_pred             ccCHHHHHHHHHHHHHhhcceeeccCCCCCCHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCC
Confidence            57999999999999999999999999999999999999998876566678877666666666778877888999999998


Q ss_pred             CCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHH
Q 013217           83 ENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLE  162 (447)
Q Consensus        83 ~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~  162 (447)
                      ++    ++.++||++|+..++.++++|||+|++.++.|++++....     .+...|..+..++++++++++.+|+++++
T Consensus        86 ~~----~i~~~sGt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~d~~~l~  156 (407)
T 2dkj_A           86 WA----NVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGGHLTHGS-----RVNFSGKLYKVVSYGVRPDTELIDLEEVR  156 (407)
T ss_dssp             EE----ECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTC-----TTSHHHHHSEEEEECCCTTTSSCCHHHHH
T ss_pred             cc----eEEecchHHHHHHHHHHhcCCCCEEEEecccccCccchHH-----HHHhcCceEEEEecCCCcccCccCHHHHH
Confidence            53    4556899999999999999999999999998877642121     23345554466666655456789999999


Q ss_pred             HHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCceE
Q 013217          163 KTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMI  242 (447)
Q Consensus       163 ~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG~i  242 (447)
                      +++++.+|++|+++.+++|...|+++|.++|+++|+++++|++|+.|+...+....++...|++++|+||+|+|++||++
T Consensus       157 ~~l~~~~~~~v~~~~p~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~G~~  236 (407)
T 2dkj_A          157 RLALEHRPKVIVAGASAYPRFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRGGLI  236 (407)
T ss_dssp             HHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSGGGCCCSCEEE
T ss_pred             HHHhhcCCeEEEEeccccCCCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccccccEEEEeccccCCCCCceEE
Confidence            99985589999998788888889999999999999999999999887776654443344589999999999999999999


Q ss_pred             EeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCC
Q 013217          243 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDN  322 (447)
Q Consensus       243 ~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~  322 (447)
                      +++++     ++.+.+.....++..++++...++++.++++.....++++..+++.++++++.+.|++.|++++.+....
T Consensus       237 ~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~  311 (407)
T 2dkj_A          237 LSNDP-----ELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARRGYRIVTGGTDN  311 (407)
T ss_dssp             EESCH-----HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSS
T ss_pred             EECCH-----HHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCceeecCCCCc
Confidence            99832     6777777655566667788877777777888765566788899999999999999998898887532346


Q ss_pred             eeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC-CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013217          323 HLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEA  401 (447)
Q Consensus       323 ~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~-~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~~~  401 (447)
                      +++++.+...+.+..++.+.|.++||.+..+..|.+. .+..++++|++++.+++.+++++|++++++.|++++.. .  
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~-~--  388 (407)
T 2dkj_A          312 HLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE-G--  388 (407)
T ss_dssp             SEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH-C--
T ss_pred             eEEEEECcccCCCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc-C--
Confidence            6778877644456788899999999999765443221 22235689999877655556699999999999988752 0  


Q ss_pred             HHhhccccchhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCC
Q 013217          402 KKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIP  445 (447)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~  445 (447)
                                         +      .+.++++|.+|.++||+|
T Consensus       389 -------------------~------~~~~~~~~~~~~~~~~~~  407 (407)
T 2dkj_A          389 -------------------P------SEALREEVRRLALAHPMP  407 (407)
T ss_dssp             -------------------C------CHHHHHHHHHHHHTSCCC
T ss_pred             -------------------c------hHHHHHHHHHHHHhcCCC
Confidence                               1      146888999999999975

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=100.00  E-value=2.3e-42  Score=342.77  Aligned_cols=398  Identities=50%  Similarity=0.822  Sum_probs=313.7

Q ss_pred             CCCHHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC
Q 013217            3 ACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD   82 (447)
Q Consensus         3 ~~~~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~   82 (447)
                      ++||+++..+.++.+++.+.+.+.+++++.|+.|++++...+.++|..||++.+++.+......+++.+++++++++|++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~   85 (405)
T 2vi8_A            6 QQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAE   85 (405)
T ss_dssp             HHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS
T ss_pred             hhCHHHHHHHHHHHHHhhcceeeccCcccCCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCC
Confidence            46899999999999988888888899999999999999998876677788888777776667888888889999999998


Q ss_pred             CCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHH
Q 013217           83 ENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLE  162 (447)
Q Consensus        83 ~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~  162 (447)
                      ++    .+.++||++|+..++.++++|||+|++.++.|+++.....     .+...|..+++++++++++++.+|+++++
T Consensus        86 ~~----~i~~~sGt~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~d~~~l~  156 (405)
T 2vi8_A           86 HA----NVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGS-----PVNFSGVQYNFVAYGVDPETHVIDYDDVR  156 (405)
T ss_dssp             EE----ECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCTTTTC-----TTSHHHHHSEEEEECBCTTTCSBCHHHHH
T ss_pred             ce----EEEecCcHHHHHHHHHHhcCCCCEEEEecccccchhcccc-----hhhhccceeEEEecccccccCCcCHHHHH
Confidence            53    4556899999999999999999999999988877643221     11234443466677666556789999999


Q ss_pred             HHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCceE
Q 013217          163 KTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMI  242 (447)
Q Consensus       163 ~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG~i  242 (447)
                      +++++.+|++|+++.++++...++++|.++|+++|+++++|++|+.|....+....++...|++++|+||+++||.||++
T Consensus       157 ~~i~~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~gG~~  236 (405)
T 2vi8_A          157 EKARLHRPKLIVAAAAAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMI  236 (405)
T ss_dssp             HHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSCEEE
T ss_pred             HHHHhcCCeEEEEeCCCCCccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCCCCCeEE
Confidence            99986689999987666766778999999999999999999999877655444333333589999999999988889999


Q ss_pred             EeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCC
Q 013217          243 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDN  322 (447)
Q Consensus       243 ~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~  322 (447)
                      ++++      ++.+.+.....++..|+++...++++.++++.+...++++..+++.++++++.+.|.+.|+++..+....
T Consensus       237 ~~~~------~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~  310 (405)
T 2vi8_A          237 LCQE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGGTDN  310 (405)
T ss_dssp             EECH------HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSS
T ss_pred             EEcH------HHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCeEecCCCCc
Confidence            9986      7777776655556667788888888877888766566788899999999999999998898887543346


Q ss_pred             eeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC-CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013217          323 HLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEA  401 (447)
Q Consensus       323 ~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~-~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~~~  401 (447)
                      +++++++...+.+..++.+.|.++||.++.+..|.+. .+..++++|++++.++++.++++|++++++.|++++...   
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~---  387 (405)
T 2vi8_A          311 HLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNV---  387 (405)
T ss_dssp             SEEEEECGGGTCCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCT---
T ss_pred             eEEEEEccCCCCCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhcc---
Confidence            6778887644556788889999999999765433222 223356899999887777788999999999999887532   


Q ss_pred             HHhhccccchhhhcccCCCCccchHHHHHHHHHHHHHH
Q 013217          402 KKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALT  439 (447)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  439 (447)
                                      .+ +    +.+..+|++|.+|+
T Consensus       388 ----------------~~-~----~~~~~~~~~~~~~~  404 (405)
T 2vi8_A          388 ----------------GS-E----QALEEARQRVAALT  404 (405)
T ss_dssp             ----------------TC-H----HHHHHHHHHHHHHH
T ss_pred             ----------------cc-c----ccHHHHHHHHHHhh
Confidence                            11 1    24778999999987

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.98  E-value=6.3e-30  Score=253.63  Aligned_cols=336  Identities=15%  Similarity=0.118  Sum_probs=243.3

Q ss_pred             cCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHH
Q 013217           21 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  100 (447)
Q Consensus        21 ~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~  100 (447)
                      ..+.+.++...+++.|++++.+.+.+.+           ...+. .+.+.+++++++++|++.++.  .+.++||++|+.
T Consensus        13 ~~~~~~pgp~~~~~~v~~a~~~~~~~~~-----------~~~~~-~~~~~~~~~la~~~~~~~~~~--v~~~~sgt~al~   78 (411)
T 3nnk_A           13 SRLLMGPGPINADPRVLRAMSSQLIGQY-----------DPAMT-HYMNEVMALYRGVFRTENRWT--MLVDGTSRAGIE   78 (411)
T ss_dssp             CCEEESSSCCCCCHHHHHHHTSCCCCTT-----------CHHHH-HHHHHHHHHHHHHHTCCCSEE--EEEESCHHHHHH
T ss_pred             cceeecCCCCCCCHHHHHHhhccccccc-----------cHHHH-HHHHHHHHHHHHHhCCCCCcE--EEECCCcHHHHH
Confidence            3467788888999999999876432211           11122 333455689999999986542  233456789999


Q ss_pred             HHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCC
Q 013217          101 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY  180 (447)
Q Consensus       101 ~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~  180 (447)
                      .++.++++|||+|++.++.|.+..   +   ...+...|.  +++.++++ .++.+|+++|++++++.+|++|++++++|
T Consensus        79 ~~~~~~~~~gd~Vl~~~~~~~~~~---~---~~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~n  149 (411)
T 3nnk_A           79 AILVSAIRPGDKVLVPVFGRFGHL---L---CEIARRCRA--EVHTIEVP-WGEVFTPDQVEDAVKRIRPRLLLTVQGDT  149 (411)
T ss_dssp             HHHHHHCCTTCEEEEEECSHHHHH---H---HHHHHHTTC--EEEEEECC-TTCCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred             HHHHHhcCCCCEEEEecCCchHHH---H---HHHHHHcCC--eEEEEecC-CCCCCCHHHHHHHHhhCCCeEEEEeCCCC
Confidence            999999999999999998775521   0   012234454  45555565 46789999999999866899999987666


Q ss_pred             CC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHH
Q 013217          181 PR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA  257 (447)
Q Consensus       181 ~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~  257 (447)
                      ++  ..|+++|.++|+++|+++++|++|+.|....+....   ++|++++|+||+|.||.| |++++++      ++.+.
T Consensus       150 ptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~---~~d~~~~s~~K~l~~~~g~g~~~~~~------~~~~~  220 (411)
T 3nnk_A          150 STTMLQPLAELGEICRRYDALFYTDATASLGGNPLETDVW---GLDAVSAGMQKCLGGPSGTSPITLSA------RMEEA  220 (411)
T ss_dssp             TTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBCCCTTTT---TCSEEECCSTTTTCCCSSEEEEEECH------HHHHH
T ss_pred             CcceeccHHHHHHHHHHcCCEEEEECCcccCCcccchhcc---CCcEEEecCccccCCCCceEEEEECH------HHHHH
Confidence            65  779999999999999999999998776543322211   489999999999888877 9999988      66665


Q ss_pred             hhhcc-----------------------------------CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHH
Q 013217          258 INNAV-----------------------------------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCR  302 (447)
Q Consensus       258 i~~~~-----------------------------------~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~  302 (447)
                      +....                                   .....++++...++++..+++.....++++..+++.++++
T Consensus       221 ~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~  300 (411)
T 3nnk_A          221 IRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGD  300 (411)
T ss_dssp             HHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            55421                                   0112367788888888888887765557888999999999


Q ss_pred             HHHHHHHHCCcEeeeCCC--CCeeEEecCCCCCCCHHHHHHHHhh-cCeEEccCCCCCCCCCCCCCeEEEec-CccccCC
Q 013217          303 ALASRLVELGYKLVSGGS--DNHLVLVDLRPMGIDGARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIGS-PAMTTRG  378 (447)
Q Consensus       303 ~l~~~L~~~g~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~L~~-~gI~v~~~~~p~~~~~~~~~~iRig~-~~~~~~g  378 (447)
                      ++.+.|++.|+++..+..  ..++.++.+. .+.+..++.+.|.+ +||.++.+..     +...+.+|+++ +..++  
T Consensus       301 ~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~gi~v~~g~~-----~~~~~~iRi~~~~~~~~--  372 (411)
T 3nnk_A          301 ALVKGIQAMGLETFGDLKHKMNNVLGVVIP-QGINGDQARKLMLEDFGIEIGTSFG-----PLHGKVWRIGTMGYNAR--  372 (411)
T ss_dssp             HHHHHHHHTTCCBCSCGGGBCSSEEEEECC-TTCCHHHHHHHHHHHHSEEEEECCG-----GGTTTEEEEECCGGGCS--
T ss_pred             HHHHHHHHcCCEeCCCcccccccEEEEECC-CCCCHHHHHHHHHHhcCeEEeCccC-----CCCCCEEEEeCccCcCC--
Confidence            999999998888765321  1344555553 35677888887765 5999975421     12345899997 54556  


Q ss_pred             CCHHHHHHHHHHHHHHHHHH
Q 013217          379 FSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       379 ~~~~di~~l~~~i~~~l~~~  398 (447)
                        ++|++++++.|+++++..
T Consensus       373 --~~~i~~~~~~l~~~l~~~  390 (411)
T 3nnk_A          373 --KDCVMTTLSALEAVLNYL  390 (411)
T ss_dssp             --HHHHHHHHHHHHHHHHHT
T ss_pred             --HHHHHHHHHHHHHHHHHc
Confidence              999999999999998753

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.97  E-value=9.2e-30  Score=252.86  Aligned_cols=336  Identities=13%  Similarity=0.095  Sum_probs=242.4

Q ss_pred             cCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHH
Q 013217           21 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  100 (447)
Q Consensus        21 ~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~  100 (447)
                      ..+.+.++...+++++++++.+.....          +. .. ...+.+..++++++++|++++.+  .+.++||++|+.
T Consensus        11 ~~~~~~p~p~~~~~~v~~a~~~~~~~~----------~~-~~-~~~~~~~l~~~la~~~g~~~~~~--~~~~~s~t~al~   76 (416)
T 3isl_A           11 LRTIMTPGPVEVDPRVLRVMSTPVVGQ----------FD-PA-FTGIMNETMEMLRELFQTKNRWA--YPIDGTSRAGIE   76 (416)
T ss_dssp             CCEECSSSSCCCCHHHHHHTTSCCCCT----------TS-HH-HHHHHHHHHHHHHHHTTCCCSEE--EEEESCHHHHHH
T ss_pred             cceeecCCCcCcCHHHHHHhcccCCCC----------cc-HH-HHHHHHHHHHHHHHHhCCCCCcE--EEecCcHHHHHH
Confidence            346677888889999999986532111          11 11 23344456689999999987532  224567779999


Q ss_pred             HHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCC
Q 013217          101 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY  180 (447)
Q Consensus       101 ~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~  180 (447)
                      .++.++++|||+|++.++.|.++.   +   ...+...|.  +++.++++ .++.+|++++++++++.+|++|++++++|
T Consensus        77 ~~~~~l~~~gd~Vl~~~~~~~~~~---~---~~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~n  147 (416)
T 3isl_A           77 AVLASVIEPEDDVLIPIYGRFGYL---L---TEIAERYGA--NVHMLECE-WGTVFDPEDIIREIKKVKPKIVAMVHGET  147 (416)
T ss_dssp             HHHHHHCCTTCEEEEEESSHHHHH---H---HHHHHHTTC--EEEEEECC-TTCCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred             HHHHHhcCCCCEEEEecCCcccHH---H---HHHHHhcCC--eeEEEecC-CCCCCCHHHHHHHHhhCCCcEEEEEccCC
Confidence            999999999999999998765521   1   012234454  55555565 45689999999999855899999987777


Q ss_pred             CC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHH
Q 013217          181 PR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA  257 (447)
Q Consensus       181 ~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~  257 (447)
                      |+  ..|+++|.++|+++|+++++|++|+.|....+....   ++|++++|+||++.||.| |++++++      ++.+.
T Consensus       148 ptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~---~~d~~~~s~~K~l~g~~g~g~~~~~~------~~~~~  218 (416)
T 3isl_A          148 STGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKVDEW---KIDAAIGGTQKCLSVPSGMAPITYNE------RVADV  218 (416)
T ss_dssp             TTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSCCCTTTT---TCSEEECCSSSTTCCCSSEEEEEECH------HHHHH
T ss_pred             CCceecCHHHHHHHHHHcCCEEEEECCccccCCCcchhhc---CCCEEEecCccccCCCCCeEEEEECH------HHHHH
Confidence            65  789999999999999999999999877554332221   489999999999888888 9999887      56655


Q ss_pred             hhhc-------------------------------------cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHH
Q 013217          258 INNA-------------------------------------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN  300 (447)
Q Consensus       258 i~~~-------------------------------------~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~  300 (447)
                      +...                                     ......++++...++++..+++.....++++..+++.++
T Consensus       219 ~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~  298 (416)
T 3isl_A          219 IAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHH  298 (416)
T ss_dssp             HHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             hhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            5421                                     111125677888888888888877655578889999999


Q ss_pred             HHHHHHHHHHCCcEeeeCCC--CCeeEEecCCCCCCCHHHHHHHHhhc-CeEEccCCCCCCCCCCCCCeEEEecCccccC
Q 013217          301 CRALASRLVELGYKLVSGGS--DNHLVLVDLRPMGIDGARVEKILDMA-SITLNKNSVPGDKSALVPGGIRIGSPAMTTR  377 (447)
Q Consensus       301 ~~~l~~~L~~~g~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~L~~~-gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~  377 (447)
                      ++++.+.|.+.|+++..+..  ..+++++.+. .+.+..++.+.|.+. ||.++.+..     +..++.+|++++.+++ 
T Consensus       299 ~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~gi~v~~g~~-----~~~~~~iRi~~~~~~~-  371 (416)
T 3isl_A          299 EAALAAGIKAMGLRLFGDDSCKMPVVTCVEIP-GGIDGESVRDMLLAQFGIEIASSFG-----PLAGKIWRIGTMGYSC-  371 (416)
T ss_dssp             HHHHHHHHHHTTCCBCSCGGGBCTTEEEEECC-TTCCHHHHHHHHHHHHCEECBCCCS-----TTTTTEEEEECCGGGC-
T ss_pred             HHHHHHHHHHcCCEeccCccccCCcEEEEeCC-CCCCHHHHHHHHHHhCCEEEecCCC-----CCCCCEEEEecccCCC-
Confidence            99999999998888765321  1234455553 345778888888665 999975421     2235689999877666 


Q ss_pred             CCCHHH-HHHHHHHHHHHHHHH
Q 013217          378 GFSEKE-FVAIADFIHEGVEIT  398 (447)
Q Consensus       378 g~~~~d-i~~l~~~i~~~l~~~  398 (447)
                         ++| ++++++.|++++...
T Consensus       372 ---~~e~i~~~~~~l~~~~~~~  390 (416)
T 3isl_A          372 ---RKENVLFVLAGLEAVLLRH  390 (416)
T ss_dssp             ---SHHHHHHHHHHHHHHHHHT
T ss_pred             ---cHHHHHHHHHHHHHHHHHc
Confidence               455 999999999988754

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.97  E-value=4.8e-30  Score=251.92  Aligned_cols=331  Identities=16%  Similarity=0.112  Sum_probs=239.1

Q ss_pred             CeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCC--CccceeeecCCcHHHH
Q 013217           22 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE--NKWGVNVQPLSGSPAN   99 (447)
Q Consensus        22 ~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~--~~~~~~v~~~sGs~a~   99 (447)
                      .+.+.++...+++.+++++...+.+.+           +.. ...+.+..++++++++|+++  +.+   +.+++|++|+
T Consensus         3 ~~~~~~gp~~~~~~v~~a~~~~~~~~~-----------~~~-~~~~~~~~~~~la~~~~~~~~~~~v---~~~~g~t~al   67 (384)
T 3zrp_A            3 KLLLHVGPTTIKEDVLVAGLENNVGFT-----------SKE-FVEALAYSLKGLRYVMGASKNYQPL---IIPGGGTSAM   67 (384)
T ss_dssp             ---CCSSCSCCCHHHHHHTTCCSCCTT-----------SHH-HHHHHHHHHHHHHHHHTCCTTSEEE---EEESCHHHHH
T ss_pred             ceeccCCCCCCCHHHHHHhhccccccc-----------cHH-HHHHHHHHHHHHHHHhCCCCCCcEE---EEcCCcHHHH
Confidence            356788888999999999977654321           111 23344456689999999986  422   3345566999


Q ss_pred             HHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCC
Q 013217          100 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA  179 (447)
Q Consensus       100 ~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~  179 (447)
                      . ++.++++|||+|++.++.|.+..   +.   ..+...|.  +++.++++ .++.+|+++++++++++++++|++++++
T Consensus        68 ~-~~~~~~~~gd~vi~~~~~~~~~~---~~---~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~  137 (384)
T 3zrp_A           68 E-SVTSLLKPNDKILVVSNGVFGDR---WE---QIFKRYPV--NVKVLRPS-PGDYVKPGEVEEEVRKSEYKLVALTHVE  137 (384)
T ss_dssp             H-HGGGGCCTTCEEEEECSSHHHHH---HH---HHHTTSSC--EEEEECCS-TTCCCCHHHHHHHHHHSCEEEEEEESEE
T ss_pred             H-HHHhhcCCCCEEEEecCCcchHH---HH---HHHHHcCC--cEEEecCC-CCCCCCHHHHHHHHHhCCCcEEEEeCCC
Confidence            9 99999999999999987664421   10   01123444  55566666 3578999999999987689999998777


Q ss_pred             CCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHH
Q 013217          180 YPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES  256 (447)
Q Consensus       180 ~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~  256 (447)
                      ||+  ..|+++|.++|+++|+++++|++|+.|....+....   ++|++++|+||+++|+.| |++++++      ++.+
T Consensus       138 nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~---~~d~~~~s~~K~~~~~~g~g~~~~~~------~~~~  208 (384)
T 3zrp_A          138 TSTGVREPVKDVINKIRKYVELIVVDGVSSVGAEEVKAEEW---NVDVYLTASQKALGSAAGLGLLLLSP------KALS  208 (384)
T ss_dssp             TTTTEECCHHHHHHHHGGGEEEEEEECTTTTTTSCCCTTTT---TCSEEEEETTSTTCCCSSEEEEEECH------HHHH
T ss_pred             CCCceECcHHHHHHHHHhcCCEEEEECcccccCcccccccc---CCCEEEecCcccccCCCceEEEEECH------HHHH
Confidence            764  789999999999999999999999876543322111   489999999999987777 9999987      5655


Q ss_pred             Hh-hh------------cc---------CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcE
Q 013217          257 AI-NN------------AV---------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYK  314 (447)
Q Consensus       257 ~i-~~------------~~---------~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~  314 (447)
                      .+ ..            ..         .....|+++...++++..+++.+...++++..+++.++++++.+.|.+.|++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~  288 (384)
T 3zrp_A          209 ILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEALGLE  288 (384)
T ss_dssp             HHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence            54 10            00         1112357788888888888887665567888999999999999999988887


Q ss_pred             eeeCC---CCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217          315 LVSGG---SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  391 (447)
Q Consensus       315 ~~~~~---~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i  391 (447)
                      +..+.   ...+++++.+..  .+..++.+.|.++||.++.+.    ..+.  +.+|++++..++    ++|++++++.|
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~g~----~~~~--~~iRi~~~~~~~----~e~i~~~~~~l  356 (384)
T 3zrp_A          289 IVARRPESYSNTVTGVILKV--ADPQKVLAGTVNEGVEFAPGV----HPAF--KYFRIGHMGWVT----PNDAIIAISVI  356 (384)
T ss_dssp             BSCSSGGGBCSSEEEEECSS--SCHHHHHHHHHTTTCCCEECC----CTTC--CEEEEECCSSCC----HHHHHHHHHHH
T ss_pred             EccCcccccCccEEEEECCC--CCHHHHHHHHHHCCEEEecCC----CCCc--CEEEEeccccCC----HHHHHHHHHHH
Confidence            76532   123455566543  577889999988899986432    1111  689999887777    99999999999


Q ss_pred             HHHHHHH
Q 013217          392 HEGVEIT  398 (447)
Q Consensus       392 ~~~l~~~  398 (447)
                      ++++...
T Consensus       357 ~~~l~~~  363 (384)
T 3zrp_A          357 ERTLRKL  363 (384)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            9998754

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.97  E-value=3.6e-29  Score=245.98  Aligned_cols=333  Identities=13%  Similarity=0.109  Sum_probs=239.0

Q ss_pred             eeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC-CCccceeeecCCcHHHHHH
Q 013217           23 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFE  101 (447)
Q Consensus        23 i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~-~~~~~~~v~~~sGs~a~~~  101 (447)
                      ....++...+++.+++++...+.+.|          + .. ...+.+.+++++++++|++ ++.   .+.+++|++|+..
T Consensus        22 ~l~~~~~~~~~~~v~~a~~~~~~~~~----------~-~~-~~~~~~~~~~~la~~~g~~~~~~---v~~~~g~t~a~~~   86 (386)
T 2dr1_A           22 KLFTAGPVACFPEVLEIMKVQMFSHR----------S-KE-YRKVHMDTVERLREFLEVEKGEV---LLVPSSGTGIMEA   86 (386)
T ss_dssp             EECCSSSCCCCHHHHHHTTSCCCCTT----------S-HH-HHHHHHHHHHHHHHHHTCSSSEE---EEESSCHHHHHHH
T ss_pred             eeecCCCcCCcHHHHHHHhccccccc----------C-HH-HHHHHHHHHHHHHHHhCCCCCcE---EEEeCChHHHHHH
Confidence            44457777889999999877654322          1 11 2344556678999999997 331   2334556699999


Q ss_pred             HHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhh-hCCcEEEEcCCCC
Q 013217          102 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL-FRPKLIIAGASAY  180 (447)
Q Consensus       102 ~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~-~~~klii~~~~~~  180 (447)
                      ++.++++|||+|++.++.|.++.   +.   ..+...|.  +++.++++ .++.+|+++|++++++ .++++|++++++|
T Consensus        87 ~~~~l~~~gd~vl~~~~~~~~~~---~~---~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~~~n  157 (386)
T 2dr1_A           87 SIRNGVSKGGKVLVTIIGAFGKR---YK---EVVESNGR--KAVVLEYE-PGKAVKPEDLDDALRKNPDVEAVTITYNET  157 (386)
T ss_dssp             HHHHHSCTTCEEEEEESSHHHHH---HH---HHHHHTTC--EEEEEECC-TTCCCCHHHHHHHHHHCTTCCEEEEESEET
T ss_pred             HHHHhhcCCCeEEEEcCCchhHH---HH---HHHHHhCC--ceEEEecC-CCCCCCHHHHHHHHhcCCCCcEEEEEeecC
Confidence            99999999999999998876521   00   12233454  55555565 3577999999999953 3799999987666


Q ss_pred             CC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHH
Q 013217          181 PR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA  257 (447)
Q Consensus       181 ~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~  257 (447)
                      |+  ..|+++|.++|+++|+++++|++|+.|....+...   .++|++++|+||++++|.| |++++++      ++.+.
T Consensus       158 ptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~---~~~di~~~s~sK~~~~~~g~G~~~~~~------~~~~~  228 (386)
T 2dr1_A          158 STGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDK---WGLDVVFSSSQKAFGVPPGLAIGAFSE------RFLEI  228 (386)
T ss_dssp             TTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBCCCTTT---TTCSEEEEETTSTTCCCSSCEEEEECH------HHHHH
T ss_pred             CcchhCCHHHHHHHHHHcCCeEEEEccccccCccccccc---cCCcEEEEeccccccCCCceEEEEECH------HHHHH
Confidence            64  77999999999999999999999987654222111   1479999999999988866 9999987      66655


Q ss_pred             hhh---------------cc--CCCCCCCCcHHHHHHHHHHHHHhcCh-hHHHHHHHHHHHHHHHHHHHHHCCcEeeeCC
Q 013217          258 INN---------------AV--FPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVELGYKLVSGG  319 (447)
Q Consensus       258 i~~---------------~~--~~~~~g~p~~~~~aal~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~  319 (447)
                      +..               ..  .....++++...++++..+++.+... ++++..+++.++++++.+.|.+.|+++..+.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~  308 (386)
T 2dr1_A          229 AEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREIGLDILAEP  308 (386)
T ss_dssp             HTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCT
T ss_pred             HhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeeCcCc
Confidence            421               00  01224567777777777788876544 5778889999999999999998888776531


Q ss_pred             C--CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          320 S--DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       320 ~--~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      .  ..+++++.+. .+.+..++.+.|.++||.+..+..+     ...+.+|++++..++    ++|++++++.|+++++.
T Consensus       309 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~~~~~-----~~~~~iRi~~~~~~~----~~~i~~~~~~l~~~~~~  378 (386)
T 2dr1_A          309 GHESPTITAVLTP-PGIKGDEVYEAMRKRGFELAKGYGS-----VKEKTFRIGHMGYMK----FEDIQEMLDNLREVINE  378 (386)
T ss_dssp             TCBCSSEEEEECC-TTCCHHHHHHHHHHTTEECEECCGG-----GTTTEEEEECCSSCC----HHHHHHHHHHHHHHHHH
T ss_pred             cccCCceEEEEcC-CCCCHHHHHHHHHHCCeEEecCccc-----cCCCEEEEECCCCCC----HHHHHHHHHHHHHHHHH
Confidence            1  2455667664 2456788888888889998654322     124589999987677    99999999999998875


Q ss_pred             H
Q 013217          398 T  398 (447)
Q Consensus       398 ~  398 (447)
                      .
T Consensus       379 ~  379 (386)
T 2dr1_A          379 L  379 (386)
T ss_dssp             H
T ss_pred             c
Confidence            4

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.97  E-value=3.4e-29  Score=246.93  Aligned_cols=336  Identities=12%  Similarity=0.088  Sum_probs=239.5

Q ss_pred             cCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHH
Q 013217           21 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  100 (447)
Q Consensus        21 ~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~  100 (447)
                      +.+.+.++...+++.+++++...+.+.|          .  ..........++++++++|+++++.  .+.+++|++|+.
T Consensus        19 ~~~~~~~g~~~~~~~v~~a~~~~~~~~~----------~--~~~~~~~~~l~~~la~~~g~~~~~~--i~~~~g~t~a~~   84 (393)
T 2huf_A           19 NKLLMGPGPSNAPQRVLDAMSRPILGHL----------H--PETLKIMDDIKEGVRYLFQTNNIAT--FCLSASGHGGME   84 (393)
T ss_dssp             CCEECSSSCCCCCHHHHHHTTSCCCCTT----------S--HHHHHHHHHHHHHHHHHHTCCCSEE--EEESSCHHHHHH
T ss_pred             CeEEecCCCCCCCHHHHHHHHhhhccCC----------C--HHHHHHHHHHHHHHHHHhCCCCCcE--EEEcCcHHHHHH
Confidence            4567778887889999999877654321          1  1122334456688999999976411  233455669999


Q ss_pred             HHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCC
Q 013217          101 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY  180 (447)
Q Consensus       101 ~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~  180 (447)
                      .++.++++|||+|+++++.|.++.  ..    ..+...|.  +++.++++ .++.+|++++++++++.+|++|+++.++|
T Consensus        85 ~~~~~~~~~gd~vl~~~~~~~~~~--~~----~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~n  155 (393)
T 2huf_A           85 ATLCNLLEDGDVILIGHTGHWGDR--SA----DMATRYGA--DVRVVKSK-VGQSLSLDEIRDALLIHKPSVLFLTQGDS  155 (393)
T ss_dssp             HHHHHHCCTTCEEEEEESSHHHHH--HH----HHHHHTTC--EEEEEECC-TTCCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred             HHHHHHhCCCCEEEEECCCcchHH--HH----HHHHHcCC--eeEEEeCC-CCCCCCHHHHHHHHhccCCcEEEEEccCC
Confidence            999999999999999998876531  00    01122344  45555565 35689999999999765899999987776


Q ss_pred             CC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHH
Q 013217          181 PR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA  257 (447)
Q Consensus       181 ~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~  257 (447)
                      |+  ..|+++|.++|+++|+++++|++|+.|....+....   ++|++++|+||+|.||.| |++++++      ++.+.
T Consensus       156 ptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~d~~~~s~sK~l~g~~G~G~~~~~~------~~~~~  226 (393)
T 2huf_A          156 STGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRW---EIDAMYTGSQKVLGAPPGITPVSFSH------RAVER  226 (393)
T ss_dssp             TTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTT---TCSEEECCSSSTTCCCSSCEEEEECH------HHHHH
T ss_pred             CccccCCHHHHHHHHHHcCCEEEEEcccccCCCCcchhhc---CccEEEECCCcccccCCCeEEEEECH------HHHHH
Confidence            65  778999999999999999999999776543222111   479999999999988888 9999987      67666


Q ss_pred             hhhc---cCC-------------------CCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEe
Q 013217          258 INNA---VFP-------------------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKL  315 (447)
Q Consensus       258 i~~~---~~~-------------------~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~  315 (447)
                      +...   ..+                   ...++++...++++..+++.+...++++..+++.++++++.+.|.+.|+++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~  306 (393)
T 2huf_A          227 YKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDAGFEL  306 (393)
T ss_dssp             HHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCB
T ss_pred             HhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCee
Confidence            5542   111                   123577888888887788876544577888999999999999999888877


Q ss_pred             eeCC--CCCeeEEecCCCCCCCHHHHHHHHhh-cCeEEccCCCCCCCCCCCCCeEEEecCcc-ccCCCCHHHHHHHHHHH
Q 013217          316 VSGG--SDNHLVLVDLRPMGIDGARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIGSPAM-TTRGFSEKEFVAIADFI  391 (447)
Q Consensus       316 ~~~~--~~~~~~~v~~~~~~~~~~~~~~~L~~-~gI~v~~~~~p~~~~~~~~~~iRig~~~~-~~~g~~~~di~~l~~~i  391 (447)
                      ..+.  ..++++++.+. .+.+..++.+.|.+ +||.++.+..+     ...+.+|++++.+ ++    ++|++++++.|
T Consensus       307 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~~gi~v~~g~~~-----~~~~~~Ri~~~~~~~~----~e~i~~~~~~l  376 (393)
T 2huf_A          307 YADPKDRLSTVTTIKVP-QGVDWLKAAQYAMKTYLVEISGGLGP-----TAGQVFRIGLMGQNAT----TERVDRVLQVF  376 (393)
T ss_dssp             SSCGGGBCTTEEEEECC-TTCCHHHHHHHHHHHHCEECBCCCGG-----GTTTEEEEECCGGGCS----HHHHHHHHHHH
T ss_pred             ccCccccCCcEEEEEcC-CCCCHHHHHHHHHHhCCEEEecCccc-----ccCCEEEEEcccCcCC----HHHHHHHHHHH
Confidence            6531  12335556653 24567888888865 69999654221     1246899998554 45    89999999999


Q ss_pred             HHHHHHH
Q 013217          392 HEGVEIT  398 (447)
Q Consensus       392 ~~~l~~~  398 (447)
                      +++++..
T Consensus       377 ~~~~~~~  383 (393)
T 2huf_A          377 QEAVAAV  383 (393)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            9988643

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.97  E-value=1.4e-29  Score=248.32  Aligned_cols=334  Identities=13%  Similarity=0.075  Sum_probs=234.3

Q ss_pred             hhcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCC-ccceeeecCCcHH
Q 013217           19 QFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDEN-KWGVNVQPLSGSP   97 (447)
Q Consensus        19 ~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~-~~~~~v~~~sGs~   97 (447)
                      .+.+.++.+++..+|+.|++++.+.+...+           +..+ ..+.+.+++++++++|++.+ ++  .+.+++|++
T Consensus        17 ~~~~~~~~pgp~~~~~~v~~a~~~~~~~~~-----------~~~~-~~~~~~~~~~la~~~g~~~~~~~--i~~~~ggt~   82 (376)
T 3f0h_A           17 FQGMLNFTVGPVMSSEEVRAIGAEQVPYFR-----------TTEF-SSTMLENEKFMLEYAKAPEGSKA--VFMTCSSTG   82 (376)
T ss_dssp             TSSCEECSSSSCCCCHHHHHHHTSCCCCCS-----------SHHH-HHHHHHHHHHHHHHHTCCTTCEE--EEESSCHHH
T ss_pred             ccCceeecCCCCCCcHHHHHHhcCCCCCCC-----------CHHH-HHHHHHHHHHHHHHhCCCCCceE--EEEcCChhH
Confidence            456789999999999999999976543211           1112 23334566889999999753 22  233456679


Q ss_pred             HHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcC
Q 013217           98 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA  177 (447)
Q Consensus        98 a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~  177 (447)
                      |+..++.++++|||+|++.++.+.++...      ......|.  +++.++.+ .++.+|++++++++++ +|++|++++
T Consensus        83 al~~~~~~~~~~gd~vi~~~~~~~~~~~~------~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~~~~-~~~~v~~~~  152 (376)
T 3f0h_A           83 SMEAVVMNCFTKKDKVLVIDGGSFGHRFV------QLCEIHEI--PYVALKLE-HGKKLTKEKLYEYDNQ-NFTGLLVNV  152 (376)
T ss_dssp             HHHHHHHHHCCTTCCEEEEESSHHHHHHH------HHHHHTTC--CEEEEECC-TTCCCCHHHHHTTTTS-CCCEEEEES
T ss_pred             HHHHHHHhccCCCCeEEEEeCChhhHHHH------HHHHHcCC--ceEEEeCC-CCCCCCHHHHHHhhcc-CceEEEEec
Confidence            99999999999999999988654443110      01223343  44444454 4578999999998766 899999986


Q ss_pred             CCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhH
Q 013217          178 SAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVEL  254 (447)
Q Consensus       178 ~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~  254 (447)
                      ++|++  ..|+++|.++|+++|+++++|++|+.|....+....   ++|++++|+||+++|+.| |++++++      ++
T Consensus       153 ~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~---~~d~~~~s~~K~l~~~~G~g~~~~~~------~~  223 (376)
T 3f0h_A          153 DETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFNMNEC---GADVMITGSQKVLACPPGISVIVLAP------RG  223 (376)
T ss_dssp             EETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH---TCSEEEEETTTTTCCCSSCEEEEECH------HH
T ss_pred             ccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCcccccccc---CccEEEecCcccccCCCceEEEEECH------HH
Confidence            66664  789999999999999999999998766432211111   379999999999987777 8888887      66


Q ss_pred             HHHhhhccCC----------------CCCCCCcHHHHHHHHHHHHHhcCh-hHHHHHHHHHHHHHHHHHHHHHCCcEeee
Q 013217          255 ESAINNAVFP----------------GLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVELGYKLVS  317 (447)
Q Consensus       255 ~~~i~~~~~~----------------~~~g~p~~~~~aal~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~  317 (447)
                      .+.+.....+                +...+++...++++..+++.+... ++++..++..++++++.+.|.+.|+++..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  303 (376)
T 3f0h_A          224 VERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLPFELVS  303 (376)
T ss_dssp             HHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSSEEECC
T ss_pred             HHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCccCc
Confidence            6666542211                123455666667777788776654 46788888899999999999888877765


Q ss_pred             CCCCCeeEEecCCCCCCCHHHHHHHHhhc-CeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          318 GGSDNHLVLVDLRPMGIDGARVEKILDMA-SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       318 ~~~~~~~~~v~~~~~~~~~~~~~~~L~~~-gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      +.....+..+.  +.+.+..++.+.|.+. ||.++.+..     +...+.+|++++..++    ++|+++++++|+++++
T Consensus       304 ~~~~~~~~~~~--~~~~~~~~l~~~l~~~~gi~v~~g~~-----~~~~~~lRis~~~~~t----~e~i~~~~~~l~~~l~  372 (376)
T 3f0h_A          304 ESPANGVTSVH--PTTANAYDIFLKLKDEYGIWICPNGG-----EMKDTIFRVGHIGALT----HEDNTTLVNAFKDLQK  372 (376)
T ss_dssp             SSBBTTEEEEE--ESSSCHHHHHHHHHHHSSEECEECCG-----GGTTTCEEEECCSSCC----HHHHHHHHHHHHHHHH
T ss_pred             cccCceEEEEe--CCCCCHHHHHHHHHHhCCEEEecCcc-----ccCCCEEEEecCCCCC----HHHHHHHHHHHHHHHH
Confidence            32222222222  3355778888888776 999865421     1234589999987777    9999999999998876

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.97  E-value=3e-29  Score=243.40  Aligned_cols=327  Identities=14%  Similarity=0.034  Sum_probs=235.0

Q ss_pred             eeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHH
Q 013217           23 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV  102 (447)
Q Consensus        23 i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~  102 (447)
                      +.+.++...+++.+++++...+...        +++   .. .......++++++++|+++++   .+.+++|++|+..+
T Consensus         3 ~l~~~~p~~~~~~v~~a~~~~~~~~--------~~~---~~-~~~~~~l~~~la~~~g~~~~~---i~~~~g~t~a~~~~   67 (352)
T 1iug_A            3 WLLTPGPVRLHPKALEALARPQLHH--------RTE---AA-REVFLKARGLLREAFRTEGEV---LILTGSGTLAMEAL   67 (352)
T ss_dssp             EECSSSSCCCCHHHHHHHHSCCCCT--------TSH---HH-HHHHHHHHHHHHHHHTCSSEE---EEEESCHHHHHHHH
T ss_pred             ccccCCCCCCCHHHHHHhccCCCCc--------cCH---HH-HHHHHHHHHHHHHHhCCCCce---EEEcCchHHHHHHH
Confidence            5678899999999999998765421        111   11 122234567899999998642   23335666999999


Q ss_pred             HHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC
Q 013217          103 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR  182 (447)
Q Consensus       103 ~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~  182 (447)
                      +.++++|||+|++.++.|.++. ..     ..+...|.  +++.++++ .++.+|++++++   + ++++|++++++||+
T Consensus        68 ~~~~~~~gd~vl~~~~~~~~~~-~~-----~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~---~-~~~~v~~~~~~npt  134 (352)
T 1iug_A           68 VKNLFAPGERVLVPVYGKFSER-FY-----EIALEAGL--VVERLDYP-YGDTPRPEDVAK---E-GYAGLLLVHSETST  134 (352)
T ss_dssp             HHHHCCTTCEEEEEECSHHHHH-HH-----HHHHHTTC--EEEEEECC-TTCCCCTTTSCC---S-SCSEEEEESEETTT
T ss_pred             HHhccCCCCeEEEEeCCchhHH-HH-----HHHHHcCC--ceEEEeCC-CCCCCCHHHHhc---c-CCcEEEEEEecCCc
Confidence            9999999999999998877642 00     01122344  55555565 356789998876   3 79999998777765


Q ss_pred             --CCChHHHHHHHHHh--CCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHH
Q 013217          183 --DFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA  257 (447)
Q Consensus       183 --~~~~~~i~~ia~~~--g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~  257 (447)
                        ..|+++|.++|+++  |+++++|++|+.|....+....   ++|++++|+|||+.||.| |++++++      ++.++
T Consensus       135 G~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~d~~~~s~~K~~~~~~g~G~~~~~~------~~~~~  205 (352)
T 1iug_A          135 GALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAM---GVDAAASGSQKGLMCPPGLGFVALSP------RALER  205 (352)
T ss_dssp             TEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGG---TCSEEEEESSSTTCCCSCEEEEEECH------HHHHT
T ss_pred             ceecCHHHHHHHHHhhCCCCEEEEECCccccCcceecccc---CeeEEEecCcccccCCCceeEEEECH------HHHHH
Confidence              78999999999999  9999999999766443221111   479999999999988888 9999987      44433


Q ss_pred             h---------h----hccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCee
Q 013217          258 I---------N----NAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHL  324 (447)
Q Consensus       258 i---------~----~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~  324 (447)
                      +         .    ........++++...++++..+++.+... +++..+++.++++++.+.|++.|+++..+....++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~  284 (352)
T 1iug_A          206 LKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEHLALKAWQNALLYGVGEEGGLRPVPKRFSPAV  284 (352)
T ss_dssp             CCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHTTCEESCSSBCTTC
T ss_pred             hhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCcccccccCCeE
Confidence            1         1    11112234677887787777788876543 77888999999999999998888887653213456


Q ss_pred             EEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          325 VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       325 ~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      +++.+.. +.+..++.+.|.++||.++.+..+     ...+.+|++++..++    ++|++++++.|+++++.
T Consensus       285 ~~~~~~~-~~~~~~~~~~l~~~gi~v~~~~~~-----~~~~~iRi~~~~~~~----~~~i~~~~~~l~~~~~~  347 (352)
T 1iug_A          285 AAFYLPE-GVPYARVKEAFAQRGAVIAGGQGP-----LKGKVFRLSLMGAYD----RYEALGVAGMFREVLEE  347 (352)
T ss_dssp             EEEECCT-TCCHHHHHHHHHTTTEECEECCGG-----GTTTEEEECCCSSCC----HHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCC-CCCHHHHHHHHHHCCEEEEeCCCc-----cCCCEEEEEccccCC----HHHHHHHHHHHHHHHHH
Confidence            6777642 457788999998889998754311     124689999988777    99999999999988764

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.97  E-value=5.2e-29  Score=245.33  Aligned_cols=336  Identities=14%  Similarity=0.088  Sum_probs=238.6

Q ss_pred             cCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHH
Q 013217           21 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  100 (447)
Q Consensus        21 ~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~  100 (447)
                      ..+.+.++...+++.|++++...+.+.+         +  .. ........++++++++|.+.++.  .+.+++|++|+.
T Consensus        23 ~~~~~~p~p~~~~~~v~~a~~~~~~~~~---------~--~~-~~~~~~~l~~~la~~~~~~~~~~--v~~~~gg~~al~   88 (393)
T 3kgw_A           23 TRLLLGPGPSNLAPRVLAAGSLRMIGHM---------Q--KE-MLQIMEEIKQGIQYVFQTRNPLT--LVVSGSGHCAME   88 (393)
T ss_dssp             CCEECSSSCCCCCHHHHHHTTCCCCCTT---------S--HH-HHHHHHHHHHHHHHHHTCCCSEE--EEESCCTTTHHH
T ss_pred             cceeccCCCCCCCHHHHHHhcccccCcc---------c--HH-HHHHHHHHHHHHHHHhCCCCCcE--EEEeCCcHHHHH
Confidence            4567788888899999999876432211         1  11 12333455678999999875432  233466779999


Q ss_pred             HHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCC
Q 013217          101 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY  180 (447)
Q Consensus       101 ~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~  180 (447)
                      .++.++++|||+|++..+.|.++.   +   ...+...|.  +++.++++ .++.+|+++|++++++++|++|+++.++|
T Consensus        89 ~~~~~~~~~gd~vl~~~~~~~~~~---~---~~~~~~~g~--~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~n  159 (393)
T 3kgw_A           89 TALFNLLEPGDSFLTGTNGIWGMR---A---AEIADRIGA--RVHQMIKK-PGEHYTLQEVEEGLAQHKPVLLFLVHGES  159 (393)
T ss_dssp             HHHHHHCCTTCEEEEEESSHHHHH---H---HHHHHHTTC--EEEEEECC-TTCCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred             HHHHhcCCCCCEEEEEeCCchhHH---H---HHHHHHcCC--ceEEEeCC-CCCCCCHHHHHHHHhhCCCcEEEEeccCC
Confidence            999999999999999875542210   0   012234454  45555565 34679999999999877899999987777


Q ss_pred             CC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHH
Q 013217          181 PR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA  257 (447)
Q Consensus       181 ~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~  257 (447)
                      |+  ..|+++|.++|++||+++++|++|+.|....+....   ++|++++|+||++.|+.| |++++++      ++.+.
T Consensus       160 ptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~---~~d~~~~s~sK~~~~~~g~g~~~~~~------~~~~~  230 (393)
T 3kgw_A          160 STGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIYMDQQ---GIDIMYSSSQKVLNAPPGISLISFND------KAKYK  230 (393)
T ss_dssp             TTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSCCCTTTT---TCCEEEEESSSTTCCCSSCEEEEECH------HHHHH
T ss_pred             cchhhccHHHHHHHHHHcCCEEEEECCccccCcccchhhc---CCCEEEecCcccccCCCceeEEEECH------HHHHH
Confidence            65  778999999999999999999998766443322111   479999999999988877 9999987      66666


Q ss_pred             hhhccCC----------------------CCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEe
Q 013217          258 INNAVFP----------------------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKL  315 (447)
Q Consensus       258 i~~~~~~----------------------~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~  315 (447)
                      +.....+                      ...++++...++++..+++.....++++..+++.++++++.+.|++.|+++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~  310 (393)
T 3kgw_A          231 VYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMGLKF  310 (393)
T ss_dssp             HHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCB
T ss_pred             HhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCee
Confidence            6432111                      123567788888888888876655678889999999999999999988877


Q ss_pred             eeCCC---CCeeEEecCCCCCCCHHHHHHHHhhc-CeEEccCCCCCCCCCCCCCeEEEecCcc-ccCCCCHHHHHHHHHH
Q 013217          316 VSGGS---DNHLVLVDLRPMGIDGARVEKILDMA-SITLNKNSVPGDKSALVPGGIRIGSPAM-TTRGFSEKEFVAIADF  390 (447)
Q Consensus       316 ~~~~~---~~~~~~v~~~~~~~~~~~~~~~L~~~-gI~v~~~~~p~~~~~~~~~~iRig~~~~-~~~g~~~~di~~l~~~  390 (447)
                      ..+..   ...+.++.+. .+.+..++.+.|.+. ||.++.+..+     ...+.+|++++.+ ++    ++|++++++.
T Consensus       311 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~gi~v~~g~~~-----~~~~~iRi~~~~~~~~----~~~i~~~~~~  380 (393)
T 3kgw_A          311 FVKDPEIRLPTITTVTVP-AGYNWRDIVSYVLDHFSIEISGGLGP-----TEERVLRIGLLGYNAT----TENVDRVAEA  380 (393)
T ss_dssp             SSSSGGGBCSSEEEEECC-TTBCHHHHHHHHHHHHCEECBCCCGG-----GTTTEEEEECCGGGCC----HHHHHHHHHH
T ss_pred             ccCChhhcCCeEEEEeCC-CCCCHHHHHHHHHHhCCEEEeCCccc-----CCCCEEEEEecccCCC----HHHHHHHHHH
Confidence            64211   1233445543 355778888888665 9999754321     2346899997443 46    9999999999


Q ss_pred             HHHHHHHH
Q 013217          391 IHEGVEIT  398 (447)
Q Consensus       391 i~~~l~~~  398 (447)
                      |+++++..
T Consensus       381 l~~~l~~~  388 (393)
T 3kgw_A          381 LREALQHC  388 (393)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHhh
Confidence            99988753

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.97  E-value=5.5e-29  Score=241.41  Aligned_cols=326  Identities=14%  Similarity=0.083  Sum_probs=234.8

Q ss_pred             eeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCC-cHHHH
Q 013217           23 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLS-GSPAN   99 (447)
Q Consensus        23 i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~s-Gs~a~   99 (447)
                      +.+.+++..+|+.|++++.+.+.+.        ++   .. ........++++++++|.+  ++    .+..++ |++|+
T Consensus         2 ~~~~~gp~~~~~~v~~a~~~~~~~~--------~~---~~-~~~~~~~l~~~la~~~g~~~~~~----~v~~t~g~t~a~   65 (353)
T 2yrr_A            2 LLLTPGPTPIPERVQKALLRPMRGH--------LD---PE-VLRVNRAIQERLAALFDPGEGAL----VAALAGSGSLGM   65 (353)
T ss_dssp             EECSSSSCCCCHHHHGGGGSCCCCT--------TC---HH-HHHHHHHHHHHHHHHHCCCTTCE----EEEESSCHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHhcccccc--------cC---HH-HHHHHHHHHHHHHHHhCCCCCCc----eEEEcCCcHHHH
Confidence            5778999999999999998765431        11   11 1233445668999999986  33    233345 56999


Q ss_pred             HHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCC
Q 013217          100 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA  179 (447)
Q Consensus       100 ~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~  179 (447)
                      ..++.++++  |+|+++++.|.++ . ..    ..+...|.  +++.++++ +++.+|++++++.+++.+|++|++++++
T Consensus        66 ~~~~~~~~~--d~vl~~~~~~~~~-~-~~----~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~l~~~~~~~v~~~~~~  134 (353)
T 2yrr_A           66 EAGLANLDR--GPVLVLVNGAFSQ-R-VA----EMAALHGL--DPEVLDFP-PGEPVDPEAVARALKRRRYRMVALVHGE  134 (353)
T ss_dssp             HHHHHTCSC--CCEEEEECSHHHH-H-HH----HHHHHTTC--CEEEEECC-TTSCCCHHHHHHHHHHSCCSEEEEESEE
T ss_pred             HHHHHHhcC--CcEEEEcCCCchH-H-HH----HHHHHcCC--ceEEEeCC-CCCCCCHHHHHHHHHhCCCCEEEEEccC
Confidence            999988876  8999988877654 1 00    11233454  44555565 4577999999999976579999998777


Q ss_pred             CCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC--cccEEEeCCCcccCCCCC-ceEEeecCCcchhhH
Q 013217          180 YPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVEL  254 (447)
Q Consensus       180 ~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~--~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~  254 (447)
                      ||+  ..|+++|.++|+++|+++++|++|..|...     .++.  ++|++++|+||++.||.| |++++++      ++
T Consensus       135 nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~~-----~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~------~~  203 (353)
T 2yrr_A          135 TSTGVLNPAEAIGALAKEAGALFFLDAVTTLGMLP-----FSMRAMGVDYAFTGSQKCLSAPPGLAPIAASL------EA  203 (353)
T ss_dssp             TTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSC-----CCHHHHTCSEEECCTTSTTCCCSSCEEEEECH------HH
T ss_pred             CCcceecCHHHHHHHHHHcCCeEEEEcCccccccc-----ccccccCceEEEecCcccccCCCceEEEEECH------HH
Confidence            765  789999999999999999999998655332     1222  369999999999988777 9999988      66


Q ss_pred             HHHhhh--------------ccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCC-
Q 013217          255 ESAINN--------------AVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGG-  319 (447)
Q Consensus       255 ~~~i~~--------------~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-  319 (447)
                      .+.+..              .......++++...++++..+++.+...++++..+++.++++++.+.|++.|+++..+. 
T Consensus       204 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~  283 (353)
T 2yrr_A          204 RKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKARGFRPYPKAS  283 (353)
T ss_dssp             HHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEESCSSS
T ss_pred             HHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCccccCcc
Confidence            655541              00112245777777777777887765555778889999999999999988888876532 


Q ss_pred             CCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHH-HHHHHHHHHHH
Q 013217          320 SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFV-AIADFIHEGVE  396 (447)
Q Consensus       320 ~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~-~l~~~i~~~l~  396 (447)
                      ..++++++.+. .+.+..++.+.|.++||.+..+..+     ..++.+|++++..++    ++|++ ++++.|+++++
T Consensus       284 ~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~g~~~-----~~~~~iRi~~~~~~~----~~~~~~~~~~~l~~~l~  351 (353)
T 2yrr_A          284 PLPTVLVVRPP-EGVDADRLVRALYAEGVAVAGGIGP-----TRGQVLRLGLMGEGA----RREAYQAFLKALDRALA  351 (353)
T ss_dssp             BCTTEEEEECC-TTCCHHHHHHHHHHTTEECEECCGG-----GTTTCEEEECSGGGS----CHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECC-CCCCHHHHHHHHHHCCEEEeCCccc-----cCCCeEEEecCccCC----HHHHHHHHHHHHHHHHh
Confidence            13455566663 3557788999998899998654322     124579999877776    88998 99999988875

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.97  E-value=2e-28  Score=241.53  Aligned_cols=332  Identities=13%  Similarity=0.083  Sum_probs=233.2

Q ss_pred             CeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCC-ccceeeecCCcHHHHH
Q 013217           22 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDEN-KWGVNVQPLSGSPANF  100 (447)
Q Consensus        22 ~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~-~~~~~v~~~sGs~a~~  100 (447)
                      .+.+.++...+++.+++++...+.+.|          +. . ...+.+.+++++++++|++++ .+   +.+++|++|+.
T Consensus        35 ~~l~~~~~~~~~~~v~~a~~~~~~~~~----------~~-~-~~~~~~~~~~~la~~~g~~~~~~v---~~t~g~t~al~   99 (393)
T 1vjo_A           35 RLLLGPGPSNAHPSVLQAMNVSPVGHL----------DP-A-FLALMDEIQSLLRYVWQTENPLTI---AVSGTGTAAME   99 (393)
T ss_dssp             CEECSSSCCCCCHHHHHHHSSCCCCTT----------SH-H-HHHHHHHHHHHHHHHHTCCCSCEE---EESSCHHHHHH
T ss_pred             ceeccCCCCCCCHHHHHHHhccccccc----------CH-H-HHHHHHHHHHHHHHHhCCCCCcEE---EEeCchHHHHH
Confidence            345566777889999999987654321          11 1 233444666899999999764 32   22345569999


Q ss_pred             HHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCC
Q 013217          101 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY  180 (447)
Q Consensus       101 ~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~  180 (447)
                      .++.++++|||+|++.++.|.+..   +   ...+...|.  +++.++++ .++.+|+++|++.+++.++++|+++.++|
T Consensus       100 ~~~~~~~~~gd~Vl~~~~~~~~~~---~---~~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~l~~~~~~~v~~~~~~n  170 (393)
T 1vjo_A          100 ATIANAVEPGDVVLIGVAGYFGNR---L---VDMAGRYGA--DVRTISKP-WGEVFSLEELRTALETHRPAILALVHAET  170 (393)
T ss_dssp             HHHHHHCCTTCEEEEEESSHHHHH---H---HHHHHHTTC--EEEEEECC-TTCCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred             HHHHhccCCCCEEEEEcCChhHHH---H---HHHHHHcCC--ceEEEecC-CCCCCCHHHHHHHHhhCCceEEEEeccCC
Confidence            999999999999999998876510   0   012233454  55555565 35779999999999765799999987776


Q ss_pred             CC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHH
Q 013217          181 PR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA  257 (447)
Q Consensus       181 ~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~  257 (447)
                      |+  ..|+++|.++|+++|+++++|++|+.|..+.+...   .++|++++|+||++++|.+ |++++++      ++.+.
T Consensus       171 ptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~---~~~di~~~s~sK~l~~~~~~G~l~~~~------~~~~~  241 (393)
T 1vjo_A          171 STGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDA---WGVDLAYSCSQKGLGCSPGASPFTMSS------RAIEK  241 (393)
T ss_dssp             TTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTT---TTCSEEECCSSSTTCSCSSCEEEEECH------HHHHH
T ss_pred             CcceeccHHHHHHHHHHcCCEEEEECCccccCcCCcccc---cCccEEEEcCcccccCCCceEEEEECH------HHHHH
Confidence            65  67899999999999999999999986643222111   1479999999999988767 9999988      66666


Q ss_pred             hhhc------c-C----------C-CC-CCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeC
Q 013217          258 INNA------V-F----------P-GL-QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSG  318 (447)
Q Consensus       258 i~~~------~-~----------~-~~-~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~  318 (447)
                      +...      . +          . .. .|+++...++++..+++.+...++++..+++.++++++.+.|++.|+++..+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~  321 (393)
T 1vjo_A          242 LQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVE  321 (393)
T ss_dssp             HHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSC
T ss_pred             HhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcCCcccCC
Confidence            5321      0 0          0 11 2377777777888888876544577888999999999999999888877653


Q ss_pred             CC--CCeeEEecCCCCCCCHHHHHHHHhhc-CeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          319 GS--DNHLVLVDLRPMGIDGARVEKILDMA-SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       319 ~~--~~~~~~v~~~~~~~~~~~~~~~L~~~-gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      ..  ...+.++.+. .+.+..++.+.|.+. ||.+..+..+     ..++.+|+++..+++   ++++++++++.|++++
T Consensus       322 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~gi~v~~g~~~-----~~~~~iRis~~~~~~---~~~~i~~~~~~l~~~l  392 (393)
T 1vjo_A          322 KEYRLPTLTTVCIP-DGVDGKAVARRLLNEHNIEVGGGLGE-----LAGKVWRVGLMGFNS---RKESVDQLIPALEQVL  392 (393)
T ss_dssp             GGGBCSSEEEEECC-TTCCHHHHHHHHHHHHCEECEECCGG-----GTTTEEEEECCGGGC---SHHHHHHHHHHHHHHH
T ss_pred             ccccCCcEEEEEcC-CCCCHHHHHHHHHhhCCEEEecCccc-----cCCCEEEEeCCccCC---hHHHHHHHHHHHHHHh
Confidence            11  1234455553 345678888888776 9999654322     124689999544432   2778999999998765

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.97  E-value=3.4e-29  Score=245.41  Aligned_cols=336  Identities=16%  Similarity=0.168  Sum_probs=234.9

Q ss_pred             cCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCc-HHHHHHHHHH
Q 013217           27 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTA  105 (447)
Q Consensus        27 ~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sG-s~a~~~~~~a  105 (447)
                      ++..++++.+++++...+.+.+  ++|+..|..+ .......+..++++++++|+++++    +..++| ++|+..++.+
T Consensus         7 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~----i~~~~g~~~a~~~~~~~   79 (382)
T 4hvk_A            7 TSAKPVDERILEAMLPYMTESF--GNPSSVHSYG-FKAREAVQEAREKVAKLVNGGGGT----VVFTSGATEANNLAIIG   79 (382)
T ss_dssp             TTCCCCCHHHHHHHHHHHHTSC--CCTTCSSHHH-HHHHHHHHHHHHHHHHHTTCTTEE----EEEESSHHHHHHHHHHH
T ss_pred             CCcCCCCHHHHHHHHHHHHhhc--CCCcccchHH-HHHHHHHHHHHHHHHHHcCCCcCe----EEEECCchHHHHHHHHH
Confidence            4555789999999999887643  5555433222 223344445678999999998753    333555 5899999998


Q ss_pred             hc----CCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCC
Q 013217          106 IL----KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP  181 (447)
Q Consensus       106 l~----~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~  181 (447)
                      +.    +|||+|++.++.|+++.....     .+...|  .+++.++++ +++.+|+++|++++++ +|++|++++++||
T Consensus        80 ~~~~~~~~gd~vi~~~~~~~~~~~~~~-----~~~~~g--~~~~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~np  150 (382)
T 4hvk_A           80 YAMRNARKGKHILVSAVEHMSVINPAK-----FLQKQG--FEVEYIPVG-KYGEVDVSFIDQKLRD-DTILVSVQHANNE  150 (382)
T ss_dssp             HHHHHGGGCCEEEEETTCCHHHHHHHH-----HHHHTT--CEEEEECBC-TTSCBCHHHHHHHCCT-TEEEEECCSBCTT
T ss_pred             hhhhhcCCCCEEEECCCCcHHHHHHHH-----HHHhcC--CEEEEeccC-CCCCcCHHHHHHHhcc-CceEEEEECCCCC
Confidence            87    999999999998877642110     111124  355566666 5678999999999987 8999999877776


Q ss_pred             C--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHh
Q 013217          182 R--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAI  258 (447)
Q Consensus       182 ~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i  258 (447)
                      +  ..|+++|.++|+++|+ +++|++|+.|....+....   ++|++++|+||+ .||.| |+++++++      .  .+
T Consensus       151 tG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~~~~~~~~---~~d~~~~s~~K~-~g~~g~g~~~~~~~------~--~~  217 (382)
T 4hvk_A          151 IGTIQPVEEISEVLAGKAA-LHIDATASVGQIEVDVEKI---GADMLTISSNDI-YGPKGVGALWIRKE------A--KL  217 (382)
T ss_dssp             TCBBCCHHHHHHHHSSSSE-EEEECTTTBTTBCCCHHHH---TCSEEEEESGGG-TSCTTCEEEEEETT------C--CC
T ss_pred             ceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCCCCCchhc---CCCEEEEeHHHh-cCCCceEEEEEcCc------c--Cc
Confidence            5  7899999999999999 9999999876543221111   479999999996 46766 99998874      2  22


Q ss_pred             hhccCC------CCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCCC--CeeEEecC
Q 013217          259 NNAVFP------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSD--NHLVLVDL  329 (447)
Q Consensus       259 ~~~~~~------~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~--~~~~~v~~  329 (447)
                      ......      ...++++...++++..+++... .++++..+++.++++++.+.|.+. |+++..+...  .+++++.+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~  296 (382)
T 4hvk_A          218 QPVILGGGQENGLRSGSENVPSIVGFGKAAEITA-MEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRF  296 (382)
T ss_dssp             CCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEE
T ss_pred             CcccccCCCcCccccCCcCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEE
Confidence            222111      1145677788888877877554 456788899999999999999884 7877653211  22344444


Q ss_pred             CCCCCCHHHHHHHHhhcCeEEccCCCCCCCC--C------C------CCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          330 RPMGIDGARVEKILDMASITLNKNSVPGDKS--A------L------VPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       330 ~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~--~------~------~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                        .+.+..++.+.|.++||.++.+..+....  +      +      ..+.+|++++..++    ++|++++++.|++++
T Consensus       297 --~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t----~e~i~~~~~~l~~~~  370 (382)
T 4hvk_A          297 --SYIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNT----DEDVDRLLEVLPGVI  370 (382)
T ss_dssp             --TTCCHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCC----HHHHHHHHHHHHHHH
T ss_pred             --CCCCHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCC----HHHHHHHHHHHHHHH
Confidence              34577889999999999987543221110  0      0      04689999987777    999999999999998


Q ss_pred             HHH
Q 013217          396 EIT  398 (447)
Q Consensus       396 ~~~  398 (447)
                      +..
T Consensus       371 ~~~  373 (382)
T 4hvk_A          371 ERL  373 (382)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.97  E-value=1.7e-28  Score=241.91  Aligned_cols=330  Identities=13%  Similarity=0.075  Sum_probs=233.3

Q ss_pred             ecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHH
Q 013217           26 IASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA  105 (447)
Q Consensus        26 ~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~a  105 (447)
                      .++...+++.|++++...+.+.        +++   .. .......++++++++|++++.+   +.+++|++|+..++.+
T Consensus        14 ~~~~~~~~~~v~~a~~~~~~~~--------~~~---~~-~~~~~~l~~~la~~~g~~~~~v---~~t~g~t~a~~~~~~~   78 (392)
T 2z9v_A           14 TAGPVNAYPEVLRGLGRTVLYD--------YDP---AF-QLLYEKVVDKAQKAMRLSNKPV---ILHGEPVLGLEAAAAS   78 (392)
T ss_dssp             SSSCCCCCHHHHHHTTSCCCCT--------TSH---HH-HHHHHHHHHHHHHHTTCSSCCE---EESSCTHHHHHHHHHH
T ss_pred             cCCCcCCCHHHHHHHhcccccc--------ccH---HH-HHHHHHHHHHHHHHhCCCCCEE---EEeCCchHHHHHHHHH
Confidence            4566678999999998765431        111   11 1222345678999999975432   3345666999999999


Q ss_pred             hcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhh-hCCcEEEEcCCCCCC--
Q 013217          106 ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL-FRPKLIIAGASAYPR--  182 (447)
Q Consensus       106 l~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~-~~~klii~~~~~~~~--  182 (447)
                      +++|||+|+++++.|.++.  ..    ..+...|.  +++.++++ .++.+|++++++++++ .+|++|++++++||+  
T Consensus        79 ~~~~gd~Vl~~~~~~~~~~--~~----~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~  149 (392)
T 2z9v_A           79 LISPDDVVLNLASGVYGKG--FG----YWAKRYSP--HLLEIEVP-YNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGT  149 (392)
T ss_dssp             HCCTTCCEEEEESSHHHHH--HH----HHHHHHCS--CEEEEECC-TTSCCCHHHHHHHHHHCTTCCEEEEESEEGGGTE
T ss_pred             hcCCCCEEEEecCCcccHH--HH----HHHHHcCC--ceEEeeCC-CCCCCCHHHHHHHHhcCCCCcEEEEeccCCCCce
Confidence            9999999999998776541  00    01122343  45555565 3467999999999963 378999998777664  


Q ss_pred             CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhc
Q 013217          183 DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNA  261 (447)
Q Consensus       183 ~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~  261 (447)
                      ..|+++|.++|+++|+++++|++|+.|....+....   ++|++++|+||++.||.| |++++++      ++.+.+...
T Consensus       150 ~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~---~~d~~~~s~sK~~~~~~g~G~l~~~~------~~~~~l~~~  220 (392)
T 2z9v_A          150 INPIDAIGALVSAHGAYLIVDAVSSFGGMKTHPEDC---KADIYVTGPNKCLGAPPGLTMMGVSE------RAWAKMKAN  220 (392)
T ss_dssp             ECCHHHHHHHHHHTTCEEEEECTTTBTTBSCCGGGG---TCSEEEECSSSTTCCCSCCEEEEECH------HHHHHHHTC
T ss_pred             eccHHHHHHHHHHcCCeEEEEcccccCCcccccccc---cceEEEecCcccccCCCceeEEEECH------HHHHHhhhc
Confidence            789999999999999999999999766443221111   379999999999988877 9999987      666655421


Q ss_pred             c-------------------CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCC--
Q 013217          262 V-------------------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS--  320 (447)
Q Consensus       262 ~-------------------~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~--  320 (447)
                      .                   .....++++...++++..+++.+...++++..+++.++++++.+.|.+.|+++..+..  
T Consensus       221 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~  300 (392)
T 2z9v_A          221 PLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAMGLSVWAASDSI  300 (392)
T ss_dssp             TTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGG
T ss_pred             cCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCeeccCCccc
Confidence            1                   0122467777777777778877655457788899999999999999888887765211  


Q ss_pred             -CCeeEEecCCCCCCCHHHHHHHHhhc-CeEEccCCCCCCCCCCCCCeEEEecCc-cccCCCCHHHHHHHHHHHHHHHHH
Q 013217          321 -DNHLVLVDLRPMGIDGARVEKILDMA-SITLNKNSVPGDKSALVPGGIRIGSPA-MTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       321 -~~~~~~v~~~~~~~~~~~~~~~L~~~-gI~v~~~~~p~~~~~~~~~~iRig~~~-~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                       ..+++++.+. .+.+..++.+.|.+. ||.+..+..+     ...+.+|+++.. .++    ++|++++++.|+++++.
T Consensus       301 ~~~~~~~~~~~-~~~~~~~l~~~L~~~~gi~v~~g~~~-----~~~~~lRi~~~~~~~~----~~~i~~~~~~l~~~~~~  370 (392)
T 2z9v_A          301 ASPTTTAVRTP-DGVDEKALRQAARARYGVVFSSGRGE-----TLGKLTRIGHMGPTAQ----PIYAIAALTALGGAMNA  370 (392)
T ss_dssp             BCTTEEEEECC-TTCCHHHHHHHHHHHHCEECEECCGG-----GTTTEEEEECCGGGCS----HHHHHHHHHHHHHHHHH
T ss_pred             cCCceEEEECC-CCCCHHHHHHHHHhcCCEEEecCCCC-----CCCCeEEEeCcccccC----HHHHHHHHHHHHHHHHH
Confidence             2455566653 245778888888776 9998654321     124689999644 566    99999999999998864


Q ss_pred             H
Q 013217          398 T  398 (447)
Q Consensus       398 ~  398 (447)
                      .
T Consensus       371 ~  371 (392)
T 2z9v_A          371 A  371 (392)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.97  E-value=3.4e-28  Score=247.29  Aligned_cols=364  Identities=13%  Similarity=0.024  Sum_probs=250.0

Q ss_pred             HHHHHHHHHHHHHhhcC-eeEecC--CCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC
Q 013217            6 PEVCEIITKEKERQFKS-LELIAS--ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD   82 (447)
Q Consensus         6 ~~~~~~~~~e~~~~~~~-i~l~~~--~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~   82 (447)
                      .++++.+.++.....+. ++| ++  ..++++.+.+++...+...+  +++     .......++|+.+++++++++|++
T Consensus        40 ~~~~~~~~~~i~l~gnp~~~l-~s~~t~~~~~~v~~~l~~~~~~~~--~~~-----~~~p~~~~le~~~~~~la~l~g~~  111 (502)
T 3hbx_A           40 EAAYQIINDELMLDGNPRLNL-ASFVTTWMEPECDKLIMSSINKNY--VDM-----DEYPVTTELQNRCVNMIAHLFNAP  111 (502)
T ss_dssp             HHHHHHHHHHGGGSCCGGGBT-TCCSCCCCCHHHHHHHHHTTTCBT--TCT-----TTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhccCCCCCcee-ccccCCCCCHHHHHHHHHHhccCC--CCh-----hcChhHHHHHHHHHHHHHHHhCCC
Confidence            34566666554322222 222 22  35678999999988776532  111     122346788888999999999998


Q ss_pred             --CCccceeeecCCcHHHHHHHHHHhcCC--------CC-----EEEEecCCCCcccCCCccccccccccccceeEEEec
Q 013217           83 --ENKWGVNVQPLSGSPANFEVYTAILKP--------HD-----RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY  147 (447)
Q Consensus        83 --~~~~~~~v~~~sGs~a~~~~~~al~~p--------gd-----~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  147 (447)
                        ++++...+.+++|++||..++.++..+        ||     +|++..+.|.++.        +.+...|.  +++.+
T Consensus       112 ~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~--------~~~~~~G~--~~~~v  181 (502)
T 3hbx_A          112 LEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWE--------KFARYFEV--ELKEV  181 (502)
T ss_dssp             CCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHH--------HHHHHTTC--EEEEE
T ss_pred             cccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHH--------HHHHHcCc--eeEEE
Confidence              544433344567779999888887655        77     8999887776532        23345565  44455


Q ss_pred             ccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHh------CCEEEEehhhhccccc--cccCC
Q 013217          148 RLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAV------GALLMMDMAHISGLVA--ASVVA  217 (447)
Q Consensus       148 ~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~------g~~livD~a~~~g~~~--~~~~~  217 (447)
                      +++++++.+|+++|++++++ +|++|+++.+++++  ..|+++|.++|+++      |+++++|+||+.+..+  .+..+
T Consensus       182 ~~~~~~~~~d~~~l~~~i~~-~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~  260 (502)
T 3hbx_A          182 KLSEGYYVMDPQQAVDMVDE-NTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELE  260 (502)
T ss_dssp             CCBTTBCSCCHHHHHHHCCT-TEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCC
T ss_pred             ecCCCcCcCCHHHHHHHHhh-CCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccc
Confidence            56654589999999999987 89988887655553  78999999999999      9999999998654321  11111


Q ss_pred             CC--CCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHH-HHhhh--ccC------CCCCCCCcHHHHHHHHHHHHHh
Q 013217          218 DP--FKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELE-SAINN--AVF------PGLQGGPHNHTIGGLAVCLKHA  285 (447)
Q Consensus       218 ~~--~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~-~~i~~--~~~------~~~~g~p~~~~~aal~~al~~~  285 (447)
                      ..  ..++|++++|+||++.+|.| |+++++++     +.. +.+..  ...      ....++.....+++++.+++.+
T Consensus       261 ~~~~~~~~D~v~~s~hK~l~~p~g~G~~~~~~~-----~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~l  335 (502)
T 3hbx_A          261 WDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNK-----EDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRL  335 (502)
T ss_dssp             CSTTSTTEEEEEEETTTTTCCCSSCEEEEESSG-----GGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHH
T ss_pred             cccCCCCceEEEECcccccCCCCCeEEEEEeCH-----HHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHH
Confidence            11  23699999999999988877 88888763     222 11111  000      1112444445567777788776


Q ss_pred             cChhHHHHHHHHHHHHHHHHHHHHHCC-cEeeeCCCCCeeEEecCCC-CCCCHHHHHHHHhhcCeEEccCCCCCCCCCCC
Q 013217          286 QSPEFKVYQNKVVSNCRALASRLVELG-YKLVSGGSDNHLVLVDLRP-MGIDGARVEKILDMASITLNKNSVPGDKSALV  363 (447)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~  363 (447)
                      ...++.+++++..+++++|.+.|.+.+ ++++.+....+++.+.+.. .+++..++.+.|.+.||.++....|...  ..
T Consensus       336 g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~p~~~--~~  413 (502)
T 3hbx_A          336 GHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNA--QH  413 (502)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSEEEEEESSCSSCCHHHHHHHHHTTTCBCCEEECCTTC--TT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceEEEEEecCCCcCCHHHHHHHHHhCCcEEeeccCCccc--CC
Confidence            667788999999999999999999865 8887642344556666543 2356678999999999998654334221  12


Q ss_pred             CCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHHH
Q 013217          364 PGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITL  399 (447)
Q Consensus       364 ~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~  399 (447)
                      ...+|+++...++    ++|++++++.|++++....
T Consensus       414 ~~~lRisv~~~~t----~edid~li~~L~~~l~~l~  445 (502)
T 3hbx_A          414 ITVLRVVIREDFS----RTLAERLVIDIEKVMRELD  445 (502)
T ss_dssp             CEEEEEECCTTCC----HHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCC----HHHHHHHHHHHHHHHHHHH
Confidence            3579999887777    9999999999999987653

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.97  E-value=1.2e-28  Score=245.11  Aligned_cols=364  Identities=16%  Similarity=0.131  Sum_probs=245.5

Q ss_pred             CCHHHHHHHHHHHHHhhc------CeeEecCCC-CCCHHHHHHHhhhhhccCCCCCCCC-cc-cCchhHHHHHHHHHHHH
Q 013217            4 CNPEVCEIITKEKERQFK------SLELIASEN-FTSRAVMEAVGSCLTNKYSEGLPGK-RY-YGGNEYIDELETLCQKR   74 (447)
Q Consensus         4 ~~~~~~~~~~~e~~~~~~------~i~l~~~~n-~~~~~v~~a~~~~~~~~~~~g~~~~-~~-~~g~~~~~~le~~~~~~   74 (447)
                      .+|+.++-+.++....++      .+.|..+++ ..|+.|++++...+.+.+  ++++. .+ |+ ....... ...++.
T Consensus         5 ~~~~~~~~~r~~f~~~~~~~~g~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~y~-~~~~~~~-~~l~~~   80 (420)
T 1t3i_A            5 QIPSLAATVRQDFPILNQEINGHPLVYLDNAATSQKPRAVLEKLMHYYENDN--ANVHRGAHQLS-VRATDAY-EAVRNK   80 (420)
T ss_dssp             --CCHHHHHGGGCGGGSCEETTEECEECBTTTCCCCCHHHHHHHHHHHHHTC--CCC--CCSHHH-HHHHHHH-HHHHHH
T ss_pred             cchHHHHHHHHhCCccccccCCCceEEecCCccCCCCHHHHHHHHHHHHhcc--CCCCcccchHH-HHHHHHH-HHHHHH
Confidence            345555555443222223      567765555 568999999988876532  23321 11 21 1111222 245678


Q ss_pred             HHHHcCC-CCCccceeeecCCcHHHHHHHHHHh----cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEeccc
Q 013217           75 ALAAFNL-DENKWGVNVQPLSGSPANFEVYTAI----LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL  149 (447)
Q Consensus        75 ~~~~~g~-~~~~~~~~v~~~sGs~a~~~~~~al----~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  149 (447)
                      +++++|. +++.+   +.+++|++|+..++.++    ++|||+|++.++.|.+......    ..+...|.  +++.+++
T Consensus        81 la~~~~~~~~~~v---~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~----~~~~~~g~--~~~~v~~  151 (420)
T 1t3i_A           81 VAKFINARSPREI---VYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQ----MVAAKTGA--VLKFVQL  151 (420)
T ss_dssp             HHHHTTCSCGGGE---EEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHH----HHHHHHCC--EEEEECB
T ss_pred             HHHHcCCCCCCeE---EEcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHH----HHHHhcCc--EEEEecc
Confidence            9999998 44432   33455669999999999    8999999999998877521100    01123343  5556556


Q ss_pred             CCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEE
Q 013217          150 DESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVT  227 (447)
Q Consensus       150 ~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~  227 (447)
                      + +++.+|++++++++++ +|++|++++++||+  ..|+++|.++|+++|+++|+|++|+.|....+....   +.|+++
T Consensus       152 ~-~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~---~~di~~  226 (420)
T 1t3i_A          152 D-EQESFDLEHFKTLLSE-KTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLI---DCDWLV  226 (420)
T ss_dssp             C-TTSSBCHHHHHHHCCT-TEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH---TCSEEE
T ss_pred             C-CCCCcCHHHHHHhhCC-CceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCccCchhhc---CCCEEE
Confidence            5 5678999999999987 89999998777664  789999999999999999999999876442111111   479999


Q ss_pred             eCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhccCCC--------------------CCCCCcHHHHHHHHHHHHHhc
Q 013217          228 TTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPG--------------------LQGGPHNHTIGGLAVCLKHAQ  286 (447)
Q Consensus       228 ~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~~~~~--------------------~~g~p~~~~~aal~~al~~~~  286 (447)
                      +|+||.+ ||.| |++++++      ++.+++......+                    ..|+++...++++..+++.+.
T Consensus       227 ~s~sK~~-~~~g~G~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~  299 (420)
T 1t3i_A          227 ASGHKMC-APTGIGFLYGKE------EILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLT  299 (420)
T ss_dssp             EEGGGTT-SCTTCEEEEECH------HHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH
T ss_pred             Eehhhhc-CCCceEEEEEch------HHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHH
Confidence            9999954 6665 9999987      7777765543221                    135677777777776777665


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCC----CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC--
Q 013217          287 SPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGS----DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK--  359 (447)
Q Consensus       287 ~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~--  359 (447)
                      ..++++..++..++++.+.+.|++. |++++.+..    ...++++.+.  +.+..++.+.|.++||.+..+..+...  
T Consensus       300 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~v~~~~~~~~~~~  377 (420)
T 1t3i_A          300 DLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVA--GLHASDVATMVDQDGIAIRSGHHCTQPLH  377 (420)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEET--TBCHHHHHHHHHTTTEECBCSCTTCHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEEC--CCCHHHHHHHHHHCCeEEeeccccchHHH
Confidence            4457788889999999999999885 888775421    2444555554  346778889999999999654211000  


Q ss_pred             CCCC-CCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          360 SALV-PGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       360 ~~~~-~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      ..+. ++.+|++++..++    ++|+++++++|+++++..
T Consensus       378 ~~~g~~~~iRis~~~~~~----~~~i~~~~~~l~~~~~~~  413 (420)
T 1t3i_A          378 RLFDASGSARASLYFYNT----KEEIDLFLQSLQATIRFF  413 (420)
T ss_dssp             HHTTCCCCEEEECCTTCC----HHHHHHHHHHHHHHHHHT
T ss_pred             HhcCCCCeEEEecCCCCC----HHHHHHHHHHHHHHHHHh
Confidence            0011 4689999887777    999999999999887643

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.97  E-value=3e-28  Score=240.47  Aligned_cols=334  Identities=13%  Similarity=0.071  Sum_probs=232.9

Q ss_pred             CeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCC-ccceeeecCCcHHHHH
Q 013217           22 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDEN-KWGVNVQPLSGSPANF  100 (447)
Q Consensus        22 ~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~-~~~~~v~~~sGs~a~~  100 (447)
                      .+.+.++...+++.+++++...+.+.|            ....+......++.+++++|.+++ ++   +.+++|++|+.
T Consensus        19 ~~~~~~~p~~~~~~v~~a~~~~~~~~~------------~~~~~~~~~~l~~~la~~~~~~~~~~v---~~~~g~t~al~   83 (396)
T 2ch1_A           19 KIMMGPGPSNCSKRVLTAMTNTVLSNF------------HAELFRTMDEVKDGLRYIFQTENRATM---CVSGSAHAGME   83 (396)
T ss_dssp             CBCCSSSSCCCCHHHHHHTTSCCCCTT------------CHHHHHHHHHHHHHHHHHHTCCCSCEE---EESSCHHHHHH
T ss_pred             ceeecCCCCCCCHHHHHHhccccccCC------------ChhHHHHHHHHHHHHHHHhCCCCCcEE---EECCcHHHHHH
Confidence            355556666789999999876543321            111223333556789999999875 22   22344569999


Q ss_pred             HHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCC
Q 013217          101 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY  180 (447)
Q Consensus       101 ~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~  180 (447)
                      .++.++++|||+|++.++.|.++...      ..+...|.  +++.++++ .++.+|++++++++++.++++|+++.++|
T Consensus        84 ~~~~~~~~~gd~vl~~~~~~~~~~~~------~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~l~~~~~~~v~~~~~~n  154 (396)
T 2ch1_A           84 AMLSNLLEEGDRVLIAVNGIWAERAV------EMSERYGA--DVRTIEGP-PDRPFSLETLARAIELHQPKCLFLTHGDS  154 (396)
T ss_dssp             HHHHHHCCTTCEEEEEESSHHHHHHH------HHHHHTTC--EEEEEECC-TTSCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred             HHHHHhcCCCCeEEEEcCCcccHHHH------HHHHHcCC--ceEEecCC-CCCCCCHHHHHHHHHhCCCCEEEEECCCC
Confidence            99999999999999999887764200      01234454  45555565 35789999999999765799999987776


Q ss_pred             CC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHH
Q 013217          181 PR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA  257 (447)
Q Consensus       181 ~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~  257 (447)
                      |+  ..|+++|.++|+++|+++++|++|+.|....+....   ++|++++|+||++.||.| |++++++      ++.+.
T Consensus       155 ptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~---~~d~~~~s~~K~~~~~~g~g~~~~~~------~~~~~  225 (396)
T 2ch1_A          155 SSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKW---EIDAVYTGAQKVLGAPPGITPISISP------KALDV  225 (396)
T ss_dssp             TTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTT---TCCEEECCCC-CCCCCSSCEEEEECH------HHHHH
T ss_pred             CCceecCHHHHHHHHHHcCCEEEEEccccccCCccchhhc---CcCEEEEcCCccccCCCCeEEEEECH------HHHHh
Confidence            65  778999999999999999999998866432211111   379999999999988877 9999887      55555


Q ss_pred             hhhc-------c---------C------CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEe
Q 013217          258 INNA-------V---------F------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKL  315 (447)
Q Consensus       258 i~~~-------~---------~------~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~  315 (447)
                      +...       .         .      ....++++...++++..+++.....++++..+++.++++++.+.|.+.|+++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~  305 (396)
T 2ch1_A          226 IRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDI  305 (396)
T ss_dssp             HHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCB
T ss_pred             hhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCee
Confidence            4321       0         0      1124567777777777788776445677888999999999999998888877


Q ss_pred             eeCCC---CCeeEEecCCCCCCCHHHHHHHHhh-cCeEEccCCCCCCCCCCCCCeEEEecCc-cccCCCCHHHHHHHHHH
Q 013217          316 VSGGS---DNHLVLVDLRPMGIDGARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIGSPA-MTTRGFSEKEFVAIADF  390 (447)
Q Consensus       316 ~~~~~---~~~~~~v~~~~~~~~~~~~~~~L~~-~gI~v~~~~~p~~~~~~~~~~iRig~~~-~~~~g~~~~di~~l~~~  390 (447)
                      +.+..   ...++++.+. .+.+..++.+.|.+ +||.+..+..+     ..++.+|++++. .++    ++|++++++.
T Consensus       306 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~~gi~v~~g~~~-----~~~~~iRi~~~~~~~~----~e~i~~~~~~  375 (396)
T 2ch1_A          306 FVKDPRHRLPTVTGIMIP-KGVDWWKVSQYAMNNFSLEVQGGLGP-----TFGKAWRVGIMGECST----VQKIQFYLYG  375 (396)
T ss_dssp             SSCSGGGBCTTEEEEECC-TTCCHHHHHHHHHHHHCBCCBCCCGG-----GTTTEEEEECCGGGCS----HHHHHHHHHH
T ss_pred             ccCCccccCCceEEEEcC-CCCCHHHHHHHHHHhCCEEEecCccc-----cCCCEEEEECCCCcCC----HHHHHHHHHH
Confidence            65321   1124556553 35677888888865 59998653211     234689999844 345    8999999999


Q ss_pred             HHHHHHHH
Q 013217          391 IHEGVEIT  398 (447)
Q Consensus       391 i~~~l~~~  398 (447)
                      |+++++..
T Consensus       376 l~~~l~~~  383 (396)
T 2ch1_A          376 FKESLKAT  383 (396)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99988753

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.97  E-value=3e-28  Score=240.97  Aligned_cols=346  Identities=16%  Similarity=0.123  Sum_probs=239.0

Q ss_pred             CeeEecCCC-CCCHHHHHHHhhhhhccCCCCCCCCc-ccCchhHHHHHHHHHHHHHHHHcCC-CCCccceeeecCCcHHH
Q 013217           22 SLELIASEN-FTSRAVMEAVGSCLTNKYSEGLPGKR-YYGGNEYIDELETLCQKRALAAFNL-DENKWGVNVQPLSGSPA   98 (447)
Q Consensus        22 ~i~l~~~~n-~~~~~v~~a~~~~~~~~~~~g~~~~~-~~~g~~~~~~le~~~~~~~~~~~g~-~~~~~~~~v~~~sGs~a   98 (447)
                      .+.|..+.+ ..|+.+++++.+.+.+.+  ++++.. +..+.. ........++++++++|. +++.+   +.+++|++|
T Consensus        24 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~~~~~~~v---~~~~g~t~a   97 (406)
T 1kmj_A           24 LAYLDSAASAQKPSQVIDAEAEFYRHGY--AAVHRGIHTLSAQ-ATEKMENVRKRASLFINARSAEEL---VFVRGTTEG   97 (406)
T ss_dssp             CEECCTTTCCCCCHHHHHHHHHHHHHTC--CCCSSCSSHHHHH-HHHHHHHHHHHHHHHTTCSCGGGE---EEESSHHHH
T ss_pred             eEEecCCccCCCCHHHHHHHHHHHHhhc--CCCCCCcchHHHH-HHHHHHHHHHHHHHHcCCCCCCeE---EEeCChhHH
Confidence            466655444 578999999998887532  233221 111111 122233456789999998 44432   223455699


Q ss_pred             HHHHHHHh----cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEE
Q 013217           99 NFEVYTAI----LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII  174 (447)
Q Consensus        99 ~~~~~~al----~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii  174 (447)
                      +..++.++    ++|||+|++.++.|.+.+....    ..+...|.  +++.++++ +++.+|+++|++++++ +|++|+
T Consensus        98 ~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~----~~~~~~g~--~~~~~~~~-~~~~~d~~~l~~~l~~-~~~~v~  169 (406)
T 1kmj_A           98 INLVANSWGNSNVRAGDNIIISQMEHHANIVPWQ----MLCARVGA--ELRVIPLN-PDGTLQLETLPTLFDE-KTRLLA  169 (406)
T ss_dssp             HHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHH----HHHHHHTC--EEEEECBC-TTSCBCGGGHHHHCCT-TEEEEE
T ss_pred             HHHHHHHhhhhcCCCCCEEEEecccchHHHHHHH----HHHHhCCC--EEEEEecC-CCCCcCHHHHHHHhcc-CCeEEE
Confidence            99999999    8999999999998877642110    01223343  55555565 4578999999999987 899999


Q ss_pred             EcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcch
Q 013217          175 AGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLG  251 (447)
Q Consensus       175 ~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~  251 (447)
                      ++++++++  ..|+++|.++|+++|+++++|++|+.|....+....   +.|++++|+||++ ||.| |++++++     
T Consensus       170 ~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~~~~~~~---~~d~~~~s~~K~~-g~~G~G~~~~~~-----  240 (406)
T 1kmj_A          170 ITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQAL---DCDFYVFSGHKLY-GPTGIGILYVKE-----  240 (406)
T ss_dssp             EESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH---TCSEEEEEGGGTT-SCTTCEEEEECH-----
T ss_pred             EeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCCCccccc---CCCEEEEEchhcc-CCCCcEEEEEeH-----
Confidence            88766664  789999999999999999999999776432111100   4799999999987 7777 9999987     


Q ss_pred             hhHHHHhhhccCCC---------------------CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH
Q 013217          252 VELESAINNAVFPG---------------------LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE  310 (447)
Q Consensus       252 ~~~~~~i~~~~~~~---------------------~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~  310 (447)
                       ++.+.+......+                     ..|+++...++++..+++.+...++++..+++.++++++.+.|++
T Consensus       241 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~  319 (406)
T 1kmj_A          241 -ALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLES  319 (406)
T ss_dssp             -HHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             -HHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhc
Confidence             7777665433211                     135677778877777787765446677888889999999999988


Q ss_pred             C-CcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC--CCC-CCCeEEEecCccccCCCCHHHHHH
Q 013217          311 L-GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK--SAL-VPGGIRIGSPAMTTRGFSEKEFVA  386 (447)
Q Consensus       311 ~-g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~--~~~-~~~~iRig~~~~~~~g~~~~di~~  386 (447)
                      . |+++..+.....++++.+.  +.+..++.+.|.++||.+..+......  ..+ .++.+|++++..++    ++|+++
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t----~~~i~~  393 (406)
T 1kmj_A          320 VPDLTLYGPQNRLGVIAFNLG--KHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNT----HEEVDR  393 (406)
T ss_dssp             STTEEEESCTTCCSEEEEEET--TCCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCC----HHHHHH
T ss_pred             CCCeEEecCCCcCCEEEEEEC--CCCHHHHHHHHhhCCcEEEeccccchHHHHhcCCCCeEEEEeecCCC----HHHHHH
Confidence            5 8887654212344555553  456778889999999998653211000  001 14689999988777    999999


Q ss_pred             HHHHHHHHHHH
Q 013217          387 IADFIHEGVEI  397 (447)
Q Consensus       387 l~~~i~~~l~~  397 (447)
                      +++.|+++++.
T Consensus       394 ~~~~l~~~~~~  404 (406)
T 1kmj_A          394 LVTGLQRIHRL  404 (406)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988763

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.97  E-value=1e-28  Score=243.97  Aligned_cols=332  Identities=20%  Similarity=0.223  Sum_probs=237.6

Q ss_pred             eeEecCCCC----CCHHHHHHHhhhhhccCCCCCCCCcccCc-hhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHH
Q 013217           23 LELIASENF----TSRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP   97 (447)
Q Consensus        23 i~l~~~~n~----~~~~v~~a~~~~~~~~~~~g~~~~~~~~g-~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~   97 (447)
                      |++..+ ++    .++.+.+++...+.. |..++++.++..| .+...++    ++++++++|.+.     .+.++||++
T Consensus        46 id~~~~-~~~g~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~l----~~~la~~~~~~~-----~i~~~sGt~  114 (399)
T 3tqx_A           46 LNFCAN-NYLGLADHPALIKTAQTVVEQ-YGFGMASVRFICGTQTIHKEL----EKDISEFLGTDD-----TILYSSCFD  114 (399)
T ss_dssp             EECSSC-CTTSCTTCHHHHHHHHHHHHH-HCSCCCSCCCCCCCBHHHHHH----HHHHHHHHTCSE-----EEEESCHHH
T ss_pred             EEeecc-CcccccCCHHHHHHHHHHHHH-hCCCCCCcCccccCchHHHHH----HHHHHHHHCCCc-----EEEECchHH
Confidence            555555 43    368999999887764 4455555555333 3334444    468888999863     455689999


Q ss_pred             HHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh-----CCcE
Q 013217           98 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKL  172 (447)
Q Consensus        98 a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~-----~~kl  172 (447)
                      |+..++.++++|||+|++..+.|+++..        .+...|.  +++.++.      +|++++++++++.     ++++
T Consensus       115 a~~~~l~~~~~~gd~v~~~~~~~~~~~~--------~~~~~g~--~~~~~~~------~d~~~l~~~l~~~~~~~~~~~~  178 (399)
T 3tqx_A          115 ANGGLFETLLGPEDAIISDELNHASIID--------GIRLCKA--QRYRYKN------NAMGDLEAKLKEADEKGARFKL  178 (399)
T ss_dssp             HHHTTHHHHCCTTCEEEEETTCCHHHHH--------HHHSCCS--EEEEECT------TCTTHHHHHHHHHHTTTCSSEE
T ss_pred             HHHHHHHHhcCCCCEEEECCcccHHHHH--------HHHHcCC--ceeEeCC------CCHHHHHHHHHhhhccCCCceE
Confidence            9999999999999999999998877532        2334454  4444432      5778999888764     7899


Q ss_pred             EEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCC----CC-CCcccEEEeCCCcccCCCCCceEEee
Q 013217          173 IIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA----DP-FKYCDVVTTTTHKSLRGPRGGMIFFK  245 (447)
Q Consensus       173 ii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~----~~-~~~~Di~~~s~~K~l~Gp~gG~i~~~  245 (447)
                      |++++++||+  ..|+++|.++|+++|+++++|++|+.|+.......    .. ....|++++|+||+++|++||+++++
T Consensus       179 v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~gG~~~~~  258 (399)
T 3tqx_A          179 IATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGASGGYTSGH  258 (399)
T ss_dssp             EEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSCCEEEEEC
T ss_pred             EEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCceEEEEcC
Confidence            9998777775  77899999999999999999999876654321100    01 12468999999999988999999998


Q ss_pred             cCCcchhhHHHHhhhccCC-CCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCee
Q 013217          246 KDPVLGVELESAINNAVFP-GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHL  324 (447)
Q Consensus       246 ~~~~~~~~~~~~i~~~~~~-~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~  324 (447)
                      +      ++.+.+.....+ ...++++...+++...+++... .+.++..+++.++++++.+.|++.|+++..  ....+
T Consensus       259 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~~  329 (399)
T 3tqx_A          259 K------EIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLK-TEGPQLRKQLQENSRYFRAGMEKLGFQLVP--GNHPI  329 (399)
T ss_dssp             H------HHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHHTCCBCC--CSSSE
T ss_pred             H------HHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHcCCCcCC--CCCCE
Confidence            8      677766543211 1234566667667667777653 446788899999999999999998888763  23456


Q ss_pred             EEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          325 VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       325 ~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      +++.+.. ..+..++.+.|.++||.+.....|..  +...+.+|++++..++    ++|++++++.|+++++.
T Consensus       330 ~~~~~~~-~~~~~~~~~~l~~~gi~v~~~~~~~~--~~~~~~iRi~~~~~~~----~~~i~~~~~~l~~~~~~  395 (399)
T 3tqx_A          330 IPVMLGD-AQLATNMADHLLQEGIYVVGFSYPVV--PMGKARIRVQMSAVHT----QQQLDRAIEAFGQVGKK  395 (399)
T ss_dssp             EEEEEEC-HHHHHHHHHHHHHTTEECCEECTTTS--CTTCEEEEEECCTTCC----HHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCC-HHHHHHHHHHHHHCCCEEeeeCCCCC--CCCCceEEEEeecCCC----HHHHHHHHHHHHHHHHH
Confidence            6666542 22456788888889999875322211  2234589999887666    99999999999998874

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.97  E-value=2.3e-28  Score=238.24  Aligned_cols=331  Identities=15%  Similarity=0.111  Sum_probs=230.3

Q ss_pred             CeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCc-h-hHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHH
Q 013217           22 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG-N-EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN   99 (447)
Q Consensus        22 ~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g-~-~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~   99 (447)
                      .+++.++...+++.|++++.+.+.+         + ++. . +...+    .++++++++|. ++...-.+.+++|++|+
T Consensus         5 ~~~~~~gp~~~~~~v~~a~~~~~~~---------~-~~~~~~~~~~~----l~~~la~~~g~-~~~~~~v~~~~g~t~a~   69 (366)
T 1m32_A            5 YLLLTPGPLTTSRTVKEAMLFDSCT---------W-DDDYNIGVVEQ----IRQQLTALATA-SEGYTSVLLQGSGSYAV   69 (366)
T ss_dssp             CEECSSSSCCCCHHHHHTTCCCCCT---------T-SHHHHTTTHHH----HHHHHHHHHCS-SSSEEEEEEESCHHHHH
T ss_pred             cccccCCCcCCCHHHHHHHhhhhcC---------C-CHHHHHHHHHH----HHHHHHHHhCC-CCcCcEEEEecChHHHH
Confidence            4778888777899999998763211         1 110 0 22333    44788899993 32110123345667999


Q ss_pred             HHHHHHhcCCCCEEEEec-CCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh-CCcEEEEcC
Q 013217          100 FEVYTAILKPHDRIMGLD-LPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-RPKLIIAGA  177 (447)
Q Consensus       100 ~~~~~al~~pgd~Vl~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~-~~klii~~~  177 (447)
                      ..++.+++++||+|++.+ +.|++.+.       ..+...|.  +++.++++ .++.+|+++|++++++. ++++|+++.
T Consensus        70 ~~~~~~~~~~gd~vi~~~~~~~~~~~~-------~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~  139 (366)
T 1m32_A           70 EAVLGSALGPQDKVLIVSNGAYGARMV-------EMAGLMGI--AHHAYDCG-EVARPDVQAIDAILNADPTISHIAMVH  139 (366)
T ss_dssp             HHHHHHSCCTTCCEEEEESSHHHHHHH-------HHHHHHTC--CEEEEECC-TTSCCCHHHHHHHHHHCTTCCEEEEES
T ss_pred             HHHHHHhcCCCCeEEEEeCCCccHHHH-------HHHHHhCC--ceEEEeCC-CCCCCCHHHHHHHHhcCCCeEEEEEec
Confidence            999999999999988775 44443210       11223344  44455555 45779999999999874 588888876


Q ss_pred             CCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhH
Q 013217          178 SAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVEL  254 (447)
Q Consensus       178 ~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~  254 (447)
                      +++|+  ..|+++|.++|+++|+++++|++|+.|....+....   +.|++++|+||++.||.| |++++++      ++
T Consensus       140 ~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~---~~di~~~s~~K~~~~~~g~G~~~~~~------~~  210 (366)
T 1m32_A          140 SETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAAL---HIDYLISSANKCIQGVPGFAFVIARE------QK  210 (366)
T ss_dssp             EETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTT---TCSEEEEESSSTTCCCSSEEEEEEEH------HH
T ss_pred             ccCCcceecCHHHHHHHHHHcCCEEEEECCccccCcCcccccc---CccEEEecCcccccCCCceEEEEECH------HH
Confidence            66654  789999999999999999999999866543222111   479999999999988888 9999998      66


Q ss_pred             HHHhhhccC-----------------CCCCCCCcHHHHHHHHHHHHHhcChh-HHHHHHHHHHHHHHHHHHHHHCCcEee
Q 013217          255 ESAINNAVF-----------------PGLQGGPHNHTIGGLAVCLKHAQSPE-FKVYQNKVVSNCRALASRLVELGYKLV  316 (447)
Q Consensus       255 ~~~i~~~~~-----------------~~~~g~p~~~~~aal~~al~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~g~~~~  316 (447)
                      .+.+.....                 ....++++...++++..+++.+...+ +++..+++.++++++.+.|++.|+++.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~  290 (366)
T 1m32_A          211 LAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTL  290 (366)
T ss_dssp             HTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBS
T ss_pred             HHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHCCCeec
Confidence            655543210                 11124677777777777888765444 677889999999999999988888765


Q ss_pred             eCC--CCCeeEEecCCC-CCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217          317 SGG--SDNHLVLVDLRP-MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       317 ~~~--~~~~~~~v~~~~-~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~  393 (447)
                      .+.  ....++++.+.. .+.+..++.+.|.++||.+..+..      +..+.+|++++..++    ++|+++++++|++
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~------~~~~~iRi~~~~~~~----~~~i~~~~~~l~~  360 (366)
T 1m32_A          291 LDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKV------SQSDCFRIGNIGEVY----AADITALLTAIRT  360 (366)
T ss_dssp             SCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEECCC------SSSCEEEEECCSSCC----HHHHHHHHHHHHH
T ss_pred             cCchhcCceEEEEEcCccCCCCHHHHHHHHHHCCEEEECCcC------CCCCEEEEecCCCCC----HHHHHHHHHHHHH
Confidence            431  123466777642 145678899999889999865321      134689999988777    9999999999988


Q ss_pred             HHH
Q 013217          394 GVE  396 (447)
Q Consensus       394 ~l~  396 (447)
                      +++
T Consensus       361 ~~~  363 (366)
T 1m32_A          361 AMY  363 (366)
T ss_dssp             HCT
T ss_pred             HHH
Confidence            754

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.96  E-value=1.8e-28  Score=242.91  Aligned_cols=341  Identities=13%  Similarity=0.067  Sum_probs=234.6

Q ss_pred             CeeEecCCC-CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCc-HHHH
Q 013217           22 SLELIASEN-FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPAN   99 (447)
Q Consensus        22 ~i~l~~~~n-~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sG-s~a~   99 (447)
                      .+.|..+.+ .+++.|++++...+.+.+  +++...|..+.. ........++++++++|++++.+    .+++| ++++
T Consensus        27 ~~~ld~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~l~~~la~~~g~~~~~v----~~~~g~t~al   99 (406)
T 3cai_A           27 WVHFDAPAGMLIPDSVATTVSTAFRRSG--ASTVGAHPSARR-SAAVLDAAREAVADLVNADPGGV----VLGADRAVLL   99 (406)
T ss_dssp             CEECBGGGCCCCCHHHHHHHHHHHHHCC--SSSCSSSHHHHH-HHHHHHHHHHHHHHHHTCCGGGE----EEESCHHHHH
T ss_pred             eEEEeCCCcCCCCHHHHHHHHHHHHhcC--CCCCCccHHHHH-HHHHHHHHHHHHHHHhCCCCCeE----EEeCChHHHH
Confidence            455554444 578999999998886532  334333321211 12233356688999999976532    23555 5888


Q ss_pred             HHHHHHh---cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 013217          100 FEVYTAI---LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG  176 (447)
Q Consensus       100 ~~~~~al---~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~  176 (447)
                      ..++.++   +++||+|+++++.|.++......    .....|.  +++.++++++++.+|+++|++++++ +|++|+++
T Consensus       100 ~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~----~~~~~g~--~v~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~  172 (406)
T 3cai_A          100 SLLAEASSSRAGLGYEVIVSRLDDEANIAPWLR----AAHRYGA--KVKWAEVDIETGELPTWQWESLISK-STRLVAVN  172 (406)
T ss_dssp             HHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHH----HHHHHBC--EEEEECCCTTTCCCCGGGHHHHCCT-TEEEEEEE
T ss_pred             HHHHHHHhhccCCCCEEEEcCCccHHHHHHHHH----HHHhcCC--eEEEEecCcccCCcCHHHHHHHhCC-CceEEEEe
Confidence            8888887   79999999999988776421100    0011343  5566666655678999999999986 89999998


Q ss_pred             CCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCc-eEEeecCCcchhh
Q 013217          177 ASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG-MIFFKKDPVLGVE  253 (447)
Q Consensus       177 ~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG-~i~~~~~~~~~~~  253 (447)
                      .++|++  ..|+++|.++|+++|+++++|++|+.|....+....   ++|++++|+||++ ||++| ++++++      +
T Consensus       173 ~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~---~~d~~~~s~~K~~-g~~~G~~~~~~~------~  242 (406)
T 3cai_A          173 SASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLDIRET---DADVVTVNAHAWG-GPPIGAMVFRDP------S  242 (406)
T ss_dssp             SBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCCCCHHHH---CCSEEEEEGGGGT-SCSCEEEEESCH------H
T ss_pred             CCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCCCchhc---CCCEEEeehhhhc-CCCcCeEEEEeh------H
Confidence            777764  789999999999999999999999876542221111   4799999999976 57688 999987      6


Q ss_pred             HHHHhhhccC--C------CCCCCCcHHHHHHHHHHHHHhcChh--------------HHHHHHHHHHHHHHHHHHHHHC
Q 013217          254 LESAINNAVF--P------GLQGGPHNHTIGGLAVCLKHAQSPE--------------FKVYQNKVVSNCRALASRLVEL  311 (447)
Q Consensus       254 ~~~~i~~~~~--~------~~~g~p~~~~~aal~~al~~~~~~~--------------~~~~~~~~~~~~~~l~~~L~~~  311 (447)
                      +.+++.....  .      ...|+++...++++..+++.+...+              +++..+++.++++++.+.|++.
T Consensus       243 ~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  322 (406)
T 3cai_A          243 VMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSL  322 (406)
T ss_dssp             HHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Confidence            7666654321  0      1146778888877777887765432              5777888889999999999884


Q ss_pred             -CcEeeeCC-CCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCC-----CCCCCCCeEEEecCccccCCCCHHHH
Q 013217          312 -GYKLVSGG-SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-----KSALVPGGIRIGSPAMTTRGFSEKEF  384 (447)
Q Consensus       312 -g~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~-----~~~~~~~~iRig~~~~~~~g~~~~di  384 (447)
                       |+++..+. ....++++.+.  +.+..++.+.|.++||.++.+. |..     ..+...+.+|++++..++    ++|+
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~~~gi~v~~g~-~~~~~~~~g~~~~~~~iRis~~~~~t----~e~i  395 (406)
T 3cai_A          323 PLVMLIGRPEAQIPVVSFAVH--KVPADRVVQRLADNGILAIANT-GSRVLDVLGVNDVGGAVTVGLAHYST----MAEV  395 (406)
T ss_dssp             TTEEECCCCSSBCSEEEEEET--TBCHHHHHHHHHHTTEECEECC-SCHHHHHHTTTTTTCCEEEECCTTCC----HHHH
T ss_pred             CCeEEcCCccccCCEEEEEEC--CcCHHHHHHHHHHCCcEEecCC-hHHHHHHcCCCCCCCeEEEEeecCCC----HHHH
Confidence             78776532 11234455543  3567889899989999987543 100     000123579999988777    9999


Q ss_pred             HHHHHHHHH
Q 013217          385 VAIADFIHE  393 (447)
Q Consensus       385 ~~l~~~i~~  393 (447)
                      +++++.|++
T Consensus       396 ~~~~~~l~~  404 (406)
T 3cai_A          396 DQLVRALAS  404 (406)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            999998864

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.96  E-value=1.8e-27  Score=234.39  Aligned_cols=325  Identities=16%  Similarity=0.072  Sum_probs=228.3

Q ss_pred             CCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc
Q 013217           28 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL  107 (447)
Q Consensus        28 ~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~  107 (447)
                      ....++|.+.+++...+.+.+  +++. . +   ....++++.+++++++++|++++++   +.+++|++|+..++.++.
T Consensus        38 ~~~~~~~~v~~a~~~~~~~~~--~~~~-~-~---~~~~~~~~~l~~~la~~~~~~~~~i---~~~~ggt~a~~~~~~~~~  107 (397)
T 3f9t_A           38 MCSNVLPITRKIVDIFLETNL--GDPG-L-F---KGTKLLEEKAVALLGSLLNNKDAYG---HIVSGGTEANLMALRCIK  107 (397)
T ss_dssp             SCCCCCTHHHHHHHHHTTCCT--TSGG-G-B---HHHHHHHHHHHHHHHHHTTCTTCEE---EEESCHHHHHHHHHHHHH
T ss_pred             ecCCCcHHHHHHHHHHHhhcC--CCcc-c-C---hhHHHHHHHHHHHHHHHhCCCCCCE---EEecCcHHHHHHHHHHHH
Confidence            344567899999988776532  2221 1 1   1245666677789999999987532   334566699999999887


Q ss_pred             CC-------------CCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEE
Q 013217          108 KP-------------HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII  174 (447)
Q Consensus       108 ~p-------------gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii  174 (447)
                      .+             ||+|++..+.|.++..        .+...|.  +++.++++ +++.+|+++|++++++.++++|+
T Consensus       108 ~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~v~  176 (397)
T 3f9t_A          108 NIWREKRRKGLSKNEHPKIIVPITAHFSFEK--------GREMMDL--EYIYAPIK-EDYTIDEKFVKDAVEDYDVDGII  176 (397)
T ss_dssp             HHHHHHHHTTCCCCSSCEEEEETTCCTHHHH--------HHHHHTC--EEEEECBC-TTSSBCHHHHHHHHHHSCCCEEE
T ss_pred             HHHHhhhhhcccCCCCeEEEECCcchhHHHH--------HHHHcCc--eeEEEeeC-CCCcCCHHHHHHHHhhcCCeEEE
Confidence            66             9999999998877532        2334454  55566666 45789999999999865789888


Q ss_pred             EcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccC-------CCCCC---cccEEEeCCCcccCCC-CCce
Q 013217          175 AGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV-------ADPFK---YCDVVTTTTHKSLRGP-RGGM  241 (447)
Q Consensus       175 ~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-------~~~~~---~~Di~~~s~~K~l~Gp-~gG~  241 (447)
                      ++.+++++  ..|+++|.++|++||+++++|++|..+.......       ..++.   ++|++++|+||++.+| +.|+
T Consensus       177 ~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~~~~g~  256 (397)
T 3f9t_A          177 GIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSLGVDSITIDPHKMGHCPIPSGG  256 (397)
T ss_dssp             EEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGGTCSEEECCTTTTTCCCSSCEE
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccccCCeEEEccccccCCCCCceE
Confidence            88666664  7799999999999999999999986554322110       01111   5799999999998655 4588


Q ss_pred             EEeecCCcchhhHHHHhhhccCCCC--------CCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCc
Q 013217          242 IFFKKDPVLGVELESAINNAVFPGL--------QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGY  313 (447)
Q Consensus       242 i~~~~~~~~~~~~~~~i~~~~~~~~--------~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  313 (447)
                      ++++++     .+.+.+... .+..        .|+++.....+.++++..+...+++++.+++.++++++.+.|++.|+
T Consensus       257 ~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  330 (397)
T 3f9t_A          257 ILFKDI-----GYKRYLDVD-APYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKENNF  330 (397)
T ss_dssp             EEESSG-----GGGGGTCEE-CTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEeCH-----HHHHhhccC-CccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            888764     444444321 1111        13433334555555666555556788889999999999999999888


Q ss_pred             EeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217          314 KLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       314 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~  393 (447)
                      +++.+ ...+++++.+.    +..++.+.|.++||.++.+.        .++.+|++++..++    ++|++++++.|++
T Consensus       331 ~~~~~-~~~~~~~~~~~----~~~~~~~~l~~~gi~v~~~~--------~~~~~Ri~~~~~~~----~e~i~~~~~~l~~  393 (397)
T 3f9t_A          331 KPVIE-PILNIVAIEDE----DYKEVCKKLRDRGIYVSVCN--------CVKALRIVVMPHIK----REHIDNFIEILNS  393 (397)
T ss_dssp             CBSSC-CSSSEEEEECT----THHHHHHHHHHTTCBCEECS--------SSSEEEEECCTTCC----HHHHHHHHHHHHH
T ss_pred             EEEcC-CCccEEEEEeC----CHHHHHHHHHhCCeEEeccC--------CCCEEEEEEcCCCC----HHHHHHHHHHHHH
Confidence            76654 33455666653    26788888988999986532        13689999987777    9999999999988


Q ss_pred             HHH
Q 013217          394 GVE  396 (447)
Q Consensus       394 ~l~  396 (447)
                      +++
T Consensus       394 ~l~  396 (397)
T 3f9t_A          394 IKR  396 (397)
T ss_dssp             HC-
T ss_pred             hhC
Confidence            764

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.96  E-value=2.7e-28  Score=239.33  Aligned_cols=337  Identities=15%  Similarity=0.144  Sum_probs=233.0

Q ss_pred             CCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc
Q 013217           28 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL  107 (447)
Q Consensus        28 ~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~  107 (447)
                      +...+|+.|++++...+.+.+  ++++..|..+... .......++++++++|++++.+   +.+++|++|+..++.++.
T Consensus         8 ~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~l~~~la~~~g~~~~~v---~~~~g~t~a~~~~~~~l~   81 (382)
T 4eb5_A            8 SAKPVDERILEAMLPYMTESF--GNPSSVHSYGFKA-REAVQEAREKVAKLVNGGGGTV---VFTSGATEANNLAIIGYA   81 (382)
T ss_dssp             TCCCCCHHHHHHHHHHHHTSC--CCTTCSSHHHHHH-HHHHHHHHHHHHHHHTCTTEEE---EEESSHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHhcc--CCCCCCcHHHHHH-HHHHHHHHHHHHHHhCCCCCeE---EEcCchHHHHHHHHHHHH
Confidence            445789999999998886532  4454433322222 2333456688999999976432   333555699999999987


Q ss_pred             ----CCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC-
Q 013217          108 ----KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR-  182 (447)
Q Consensus       108 ----~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~-  182 (447)
                          +|||+|++.++.|.++.....     .+...|.  +++.++++ +++.+|+++|++++++ +|++|++++++||+ 
T Consensus        82 ~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG  152 (382)
T 4eb5_A           82 MRNARKGKHILVSAVEHMSVINPAK-----FLQKQGF--EVEYIPVG-KYGEVDVSFIDQKLRD-DTILVSVQHANNEIG  152 (382)
T ss_dssp             HHHGGGCCEEEEETTCCHHHHHHHH-----HHTTTTC--EEEEECBC-TTSCBCHHHHHHHCCT-TEEEEECCSBCTTTC
T ss_pred             hhccCCCCEEEECCCcchHHHHHHH-----HHHhCCc--EEEEeccC-CCCccCHHHHHHHhcC-CCeEEEEeccCCCcc
Confidence                899999999998876532110     0112343  55666666 4678999999999987 89999888777764 


Q ss_pred             -CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhh
Q 013217          183 -DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINN  260 (447)
Q Consensus       183 -~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~  260 (447)
                       ..|+++|.++|+++|++ ++|++|+.|....+....   ++|++++|+||+ .||.| |+++++++      .  .+..
T Consensus       153 ~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~~~~~~~~---~~di~~~s~sK~-~g~~g~G~~~~~~~------~--~l~~  219 (382)
T 4eb5_A          153 TIQPVEEISEVLAGKAAL-HIDATASVGQIEVDVEKI---GADMLTISSNDI-YGPKGVGALWIRKE------A--KLQP  219 (382)
T ss_dssp             BBCCHHHHHHHHTTSSEE-EEECTTTBTTBCCCHHHH---TCSEEEEETGGG-TCCSSCEEEEEETT------C--CCCC
T ss_pred             ccCCHHHHHHHHHHCCCE-EEEcchhcCCcccCcccc---CCCEEEeehHHh-cCCCceEEEEEccc------c--ccCc
Confidence             78999999999999999 999999765432111000   479999999997 57776 99998874      1  1221


Q ss_pred             ccC------CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCC--CCeeEEecCCC
Q 013217          261 AVF------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGS--DNHLVLVDLRP  331 (447)
Q Consensus       261 ~~~------~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~--~~~~~~v~~~~  331 (447)
                      ...      ....++++...++++..+++.+. .++++..+++.++++++.+.|.+. |+++..+..  ..+++++.+. 
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-  297 (382)
T 4eb5_A          220 VILGGGQENGLRSGSENVPSIVGFGKAAEITA-MEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFS-  297 (382)
T ss_dssp             SSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEET-
T ss_pred             eecCCCccccccCCCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeC-
Confidence            111      11245677777777777887655 357788889999999999999884 787764321  1334555553 


Q ss_pred             CCCCHHHHHHHHhhcCeEEccCCC--CCCC--------CC----CCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          332 MGIDGARVEKILDMASITLNKNSV--PGDK--------SA----LVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       332 ~~~~~~~~~~~L~~~gI~v~~~~~--p~~~--------~~----~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                       +.+..++.+.|.++||.++.+..  +...        .+    ...+.+|++++..++    ++|++++++.|+++++.
T Consensus       298 -~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~----~~~i~~~~~~l~~~~~~  372 (382)
T 4eb5_A          298 -YIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNT----DEDVDRLLEVLPGVIER  372 (382)
T ss_dssp             -TSCHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCC----HHHHHHHHHHHHHHHHH
T ss_pred             -CcCHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCC----HHHHHHHHHHHHHHHHH
Confidence             45678898999899999875421  1100        00    014689999887777    99999999999998876


Q ss_pred             HH
Q 013217          398 TL  399 (447)
Q Consensus       398 ~~  399 (447)
                      ..
T Consensus       373 ~~  374 (382)
T 4eb5_A          373 LR  374 (382)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.96  E-value=1.1e-27  Score=235.01  Aligned_cols=337  Identities=19%  Similarity=0.190  Sum_probs=229.3

Q ss_pred             CCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc--
Q 013217           30 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--  107 (447)
Q Consensus        30 n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~--  107 (447)
                      ...|+.|++++...+.+.|  +.|...+..+... .......++++++++|++++.+   +.+++|++|+..++.++.  
T Consensus        11 ~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~l~~~la~~~g~~~~~v---~~~~g~t~a~~~~~~~~~~~   84 (384)
T 1eg5_A           11 TRVDDRVLEEMIVFYREKY--GNPNSAHGMGIEA-NLHMEKAREKVAKVLGVSPSEI---FFTSCATESINWILKTVAET   84 (384)
T ss_dssp             CCCCHHHHHHHHHHHHTCC--CCTTCSSHHHHHH-HHHHHHHHHHHHHHHTSCGGGE---EEESCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhcC--CCCccccHHHHHH-HHHHHHHHHHHHHHcCCCCCeE---EEECCHHHHHHHHHHhhhhh
Confidence            3679999999999887644  2333222111111 2222345678999999886532   233555699999999987  


Q ss_pred             --CCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--C
Q 013217          108 --KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--D  183 (447)
Q Consensus       108 --~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~  183 (447)
                        +|||+|++.++.|.++....     ..+...|.  +++.++++ .++.+|+++|++++++ +|++|+++.++||+  .
T Consensus        85 ~~~~gd~vl~~~~~~~~~~~~~-----~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~  155 (384)
T 1eg5_A           85 FEKRKRTIITTPIEHKAVLETM-----KYLSMKGF--KVKYVPVD-SRGVVKLEELEKLVDE-DTFLVSIMAANNEVGTI  155 (384)
T ss_dssp             TTTTCCEEEECTTSCHHHHHHH-----HHHHHTTC--EEEECCBC-TTSCBCHHHHHHHCCT-TEEEEEEESBCTTTCBB
T ss_pred             ccCCCCEEEECCCCchHHHHHH-----HHHHhcCC--EEEEEccC-CCCccCHHHHHHHhCC-CCeEEEEECCCCCcccc
Confidence              89999999998887653211     01123343  56666666 4578999999999987 89999998777774  7


Q ss_pred             CChHHHHHHHHHhC--CEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhH--HHHh
Q 013217          184 FDYPRMRQIADAVG--ALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVEL--ESAI  258 (447)
Q Consensus       184 ~~~~~i~~ia~~~g--~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~--~~~i  258 (447)
                      .|+++|.++|+++|  +++|+|++|+.|....++..  . ++|++++|+||+ .||.| |+++++++      +  ...+
T Consensus       156 ~~~~~i~~l~~~~~~~~~li~Dea~~~~~~~~~~~~--~-~~di~~~s~sK~-~g~~G~G~~~~~~~------~~~~~~~  225 (384)
T 1eg5_A          156 QPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEK--L-EVDYASFSAHKF-HGPKGVGITYIRKG------VPIRPLI  225 (384)
T ss_dssp             CCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTT--T-CCSEEEEEGGGG-TSCTTCEEEEECTT------SCCCCSB
T ss_pred             cCHHHHHHHHHhcCCceEEEEEhhhhcCCcccCchh--c-CCCEEEecHHHh-cCCCceEEEEEcCC------Ccccccc
Confidence            89999999999999  99999999876543222111  1 479999999997 56776 99999873      3  1111


Q ss_pred             hhcc--CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCC--CCeeEEecCCCCCC
Q 013217          259 NNAV--FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS--DNHLVLVDLRPMGI  334 (447)
Q Consensus       259 ~~~~--~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~--~~~~~~v~~~~~~~  334 (447)
                      ....  .....++++...++++..+++... .++++..+++.++++++.+.|.+.|+++..+..  .....++.+.  +.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~--~~  302 (384)
T 1eg5_A          226 HGGGQERGLRSGTQNVPGIVGAARAMEIAV-EELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFP--NI  302 (384)
T ss_dssp             CSSCTTTTTBCSCCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEECT--TC
T ss_pred             ccCcccccccCCCCChHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCCCCeEEeCCcccCCCCEEEEEeC--CC
Confidence            1100  011245677777777777887643 356788899999999999999888888765321  1223444443  34


Q ss_pred             CHHHHHHHHhhcCeEEccCCCCCCCC----------CC----CCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          335 DGARVEKILDMASITLNKNSVPGDKS----------AL----VPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       335 ~~~~~~~~L~~~gI~v~~~~~p~~~~----------~~----~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      +..++.+.|.++||.+..+...+...          ..    ..+.+|++++..++    ++|++++++.|+++++..
T Consensus       303 ~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~----~~~i~~~~~~l~~~~~~~  376 (384)
T 1eg5_A          303 RGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNT----EEEVDYFLKKIEEILSFL  376 (384)
T ss_dssp             CHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCC----HHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCC----HHHHHHHHHHHHHHHHHH
Confidence            67888899999999997532111000          00    13579999887677    999999999999988754

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.96  E-value=1.2e-27  Score=238.31  Aligned_cols=352  Identities=14%  Similarity=0.159  Sum_probs=237.1

Q ss_pred             HHHHhhcCeeEe-cCCCCCCHHHHHHHhhhhh--ccCCCCCCCC-cccCchhHHHHHHHHHHHHHHHHcCCCCCccceee
Q 013217           15 EKERQFKSLELI-ASENFTSRAVMEAVGSCLT--NKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNV   90 (447)
Q Consensus        15 e~~~~~~~i~l~-~~~n~~~~~v~~a~~~~~~--~~~~~g~~~~-~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v   90 (447)
                      |+...+..+-|. ++...+++.|++++.+.+.  +.|  ++|.. .+..+ .......+.+++++++++|++++.+   +
T Consensus        16 ~~~~~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~l~~~la~~~~~~~~~v---~   89 (423)
T 3lvm_A           16 VYRAMKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTF--GNPASRSHRFG-WQAEEAVDIARNQIADLVGADPREI---V   89 (423)
T ss_dssp             ----CCSSEECBTTTCCCCCHHHHHHHTTSSSTTSCC--SCTTCTTSHHH-HHHHHHHHHHHHHHHHHHTCCGGGE---E
T ss_pred             cccccCCCEeecCCCcCCCCHHHHHHHHHHHhhcccc--cCCCccccchh-HHHHHHHHHHHHHHHHHcCCCCCeE---E
Confidence            334445566655 4444679999999998887  544  44543 22222 2223344456789999999986532   2


Q ss_pred             ecCCcHHHHHHHHHHhcC----CCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhh
Q 013217           91 QPLSGSPANFEVYTAILK----PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAI  166 (447)
Q Consensus        91 ~~~sGs~a~~~~~~al~~----pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~  166 (447)
                      .+++|++|+.+++.++.+    |||+|++..+.|+++.....     .+...|.  +++.++++ .++.+|+++|+++++
T Consensus        90 ~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~  161 (423)
T 3lvm_A           90 FTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCR-----QLEREGF--EVTYLAPQ-RNGIIDLKELEAAMR  161 (423)
T ss_dssp             EESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHH-----HHHHTTC--EEEEECCC-TTSCCCHHHHHHHCC
T ss_pred             EeCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHH-----HHHHcCC--EEEEeccC-CCCccCHHHHHHhcC
Confidence            235556999999988873    89999999998877532110     1122243  55566666 367899999999998


Q ss_pred             hhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEE
Q 013217          167 LFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIF  243 (447)
Q Consensus       167 ~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~  243 (447)
                      + ++++|+++.++|++  ..|+++|.++|+++|+++++|++|+.|....+....   ++|++++|+||++ |+.| |+++
T Consensus       162 ~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~---~~di~~~s~sK~~-g~~g~G~~~  236 (423)
T 3lvm_A          162 D-DTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQL---KVDLMSFSGHKIY-GPKGIGALY  236 (423)
T ss_dssp             T-TEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTS---CCSEEEEESTTTT-SCSSCEEEE
T ss_pred             C-CcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCCcChhhc---CCCEEEechHHhc-CCCCeEEEE
Confidence            7 89999988777664  789999999999999999999998776543222111   4799999999965 5655 9999


Q ss_pred             eecCCcchhhHHHHhhhccC------CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEee
Q 013217          244 FKKDPVLGVELESAINNAVF------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLV  316 (447)
Q Consensus       244 ~~~~~~~~~~~~~~i~~~~~------~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~  316 (447)
                      ++++      ..+.+.....      ....++++...++++.++++.+.. .+++..+++.++++.+.+.|.+. |+++.
T Consensus       237 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  309 (423)
T 3lvm_A          237 VRRK------PRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKE-EMATEMERLRGLRNRLWNGIKDIEEVYLN  309 (423)
T ss_dssp             ECBT------TBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTSTTEEEE
T ss_pred             Eecc------ccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence            9873      3333333221      122466777888888778876543 36778889999999999999885 88877


Q ss_pred             eCCCC--CeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCC--CCCCC--------CC----CCCeEEEecCccccCCCC
Q 013217          317 SGGSD--NHLVLVDLRPMGIDGARVEKILDMASITLNKNSV--PGDKS--------AL----VPGGIRIGSPAMTTRGFS  380 (447)
Q Consensus       317 ~~~~~--~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~--p~~~~--------~~----~~~~iRig~~~~~~~g~~  380 (447)
                      .+...  ..++.+.+  .+.+..++.+.|.+  |.++.+..  ++...        ..    ..+.+|++++..++    
T Consensus       310 ~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t----  381 (423)
T 3lvm_A          310 GDLEHGAPNILNVSF--NYVEGESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTT----  381 (423)
T ss_dssp             SCSTTBCTTEEEEEE--TTSCHHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCC----
T ss_pred             CCccccCCCeEEEEe--CCCCHHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCCC----
Confidence            54211  22333443  34577888888877  77755321  11000        00    13689999887766    


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 013217          381 EKEFVAIADFIHEGVEITLE  400 (447)
Q Consensus       381 ~~di~~l~~~i~~~l~~~~~  400 (447)
                      ++|++++++.|+++++....
T Consensus       382 ~e~i~~~~~~l~~~~~~~~~  401 (423)
T 3lvm_A          382 EEEIDYTIELVRKSIGRLRD  401 (423)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999986643

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.96  E-value=1.1e-27  Score=239.02  Aligned_cols=334  Identities=17%  Similarity=0.155  Sum_probs=235.3

Q ss_pred             eeEecCCC---CCCHHHHHHHhhhhhccCCCCCCCCcccCc-hhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHH
Q 013217           23 LELIASEN---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA   98 (447)
Q Consensus        23 i~l~~~~n---~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g-~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a   98 (447)
                      |++..+.+   ..++.+++++.+.+.. |..++++.++..| .+...+++    +++++++|.+.     .+.++||++|
T Consensus        67 id~~~~~~lg~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~G~~~~~~~l~----~~la~~~g~~~-----~i~~~sGs~a  136 (427)
T 2w8t_A           67 ILLGTYNYMGMTFDPDVIAAGKEALEK-FGSGTCGSRMLNGTFHDHMEVE----QALRDFYGTTG-----AIVFSTGYMA  136 (427)
T ss_dssp             EECSCCCTTCGGGCHHHHHHHHHHHHH-HCSCCCSCTTTTCCCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHH
T ss_pred             EEEECcccccCCCCHHHHHHHHHHHHH-hCCCCcccccccCCcHHHHHHH----HHHHHHhCCCc-----eEEecCcHHH
Confidence            45544432   2578999999887764 3445665554444 34444554    67888899863     3556999999


Q ss_pred             HHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh---CCcEEEE
Q 013217           99 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF---RPKLIIA  175 (447)
Q Consensus        99 ~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~---~~klii~  175 (447)
                      +..++.+++++||+|++..+.|+++..        .+...|.  +++.++      .+|+++|++++++.   ++++|++
T Consensus       137 ~~~al~~l~~~gd~vl~~~~~h~~~~~--------~~~~~g~--~~~~~~------~~d~~~le~~l~~~~~~~~~~v~~  200 (427)
T 2w8t_A          137 NLGIISTLAGKGEYVILDADSHASIYD--------GCQQGNA--EIVRFR------HNSVEDLDKRLGRLPKEPAKLVVL  200 (427)
T ss_dssp             HHHHHHHHSCTTCEEEEETTCCHHHHH--------HHHHSCS--EEEEEC------TTCHHHHHHHHHTSCSSSCEEEEE
T ss_pred             HHHHHHHhcCCCCEEEECCcccHHHHH--------HHHHcCC--eeEEeC------CCCHHHHHHHHHhccCCCCeEEEE
Confidence            999999999999999999988876532        2334454  444543      26999999999764   6889998


Q ss_pred             cCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhcccccc-cc--CC-CCC-CcccEEEeCCCcccCCCCCceEEeecCC
Q 013217          176 GASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAA-SV--VA-DPF-KYCDVVTTTTHKSLRGPRGGMIFFKKDP  248 (447)
Q Consensus       176 ~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~-~~--~~-~~~-~~~Di~~~s~~K~l~Gp~gG~i~~~~~~  248 (447)
                      +++++++  ..++++|.++|+++|+++|+|++|+.|.... +.  .. ..+ +.+|++++|+||+++ ++||++++++  
T Consensus       201 ~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g-~~gG~v~~~~--  277 (427)
T 2w8t_A          201 EGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVG-TVGGFVVSNH--  277 (427)
T ss_dssp             ESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTC-SCCEEEEECC--
T ss_pred             cCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhc-cCCCEEEeCH--
Confidence            8766654  7799999999999999999999997765531 10  00 111 247999999999984 7789999987  


Q ss_pred             cchhhHHHHhhhccCC-CCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEe
Q 013217          249 VLGVELESAINNAVFP-GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLV  327 (447)
Q Consensus       249 ~~~~~~~~~i~~~~~~-~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v  327 (447)
                          ++.+.+.....+ ...++++...++++..+++.+..  .++..+++.++++++.+.|++.|+++..+.....++++
T Consensus       278 ----~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~  351 (427)
T 2w8t_A          278 ----PKFEAVRLACRPYIFTASLPPSVVATATTSIRKLMT--AHEKRERLWSNARALHGGLKAMGFRLGTETCDSAIVAV  351 (427)
T ss_dssp             ----TTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHHHHHHHHHTCEESCSSCCSSEEEE
T ss_pred             ----HHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCEEEE
Confidence                555555432111 11345666677776677877642  46678889999999999998888887633213456677


Q ss_pred             cCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          328 DLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       328 ~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      .+.. ..+..++.+.|.++||.+..+..|+.  +...+.+|++++..++    ++|++++++.|+++++..
T Consensus       352 ~~~~-~~~~~~l~~~L~~~Gi~v~~~~~~~~--~~~~~~lRi~~~~~~t----~e~i~~~~~~l~~~l~~~  415 (427)
T 2w8t_A          352 MLED-QEQAAMMWQALLDGGLYVNMARPPAT--PAGTFLLRCSICAEHT----PAQIQTVLGMFQAAGRAV  415 (427)
T ss_dssp             EESS-HHHHHHHHHHHHHTTEECEEECTTTS--CTTCEEEEEECCTTCC----HHHHHHHHHHHHHHHHHH
T ss_pred             EECC-HHHHHHHHHHHHHCCeEEeeeCCCCC--CCCCeEEEEEeCCCCC----HHHHHHHHHHHHHHHHHh
Confidence            6642 22356788888888999876543322  1124589999987777    999999999999988654

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.96  E-value=6.4e-28  Score=234.84  Aligned_cols=330  Identities=9%  Similarity=0.023  Sum_probs=230.5

Q ss_pred             cCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHH
Q 013217           21 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  100 (447)
Q Consensus        21 ~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~  100 (447)
                      +.+++.++...+|+.+++++...+.+.. .++..    .+..+. .+.+.+++++++++|.+..+.  .+.+++|++|+.
T Consensus         4 ~~~~~~p~p~~~~~~v~~~~~~~~~~~~-~~~~~----~~~~~~-~~~~~~~~~la~~~g~~~~~~--v~~~~g~t~al~   75 (362)
T 3ffr_A            4 NKIYFTPGPSELYPTVRQHMITALDEKI-GVISH----RSKKFE-EVYKTASDNLKTLLELPSNYE--VLFLASATEIWE   75 (362)
T ss_dssp             CCEEECSSSCCCCTTHHHHHHHHHHTTT-TTSCT----TSHHHH-HHHHHHHHHHHHHTTCCTTEE--EEEESCHHHHHH
T ss_pred             cceeccCCCcCCCHHHHHHHHHHhcCCc-cCcCC----CCHHHH-HHHHHHHHHHHHHhCCCCCcE--EEEeCCchHHHH
Confidence            4688899999999999988877765532 11111    122222 333456789999999863322  233456669999


Q ss_pred             HHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCC
Q 013217          101 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY  180 (447)
Q Consensus       101 ~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~  180 (447)
                      +++.++++|  .+++..+.+.++.   +.   ..+...|.  +++.++.+ .++.+|+++++  +++ +|++|++++++|
T Consensus        76 ~~~~~l~~~--~~i~~~~~~~~~~---~~---~~~~~~g~--~~~~v~~~-~~~~~d~~~l~--~~~-~~~~v~~~~~~n  141 (362)
T 3ffr_A           76 RIIQNCVEK--KSFHCVNGSFSKR---FY---EFAGELGR--EAYKEEAA-FGKGFYPADIT--VPA-DAEIICLTHNET  141 (362)
T ss_dssp             HHHHHHCSS--EEEEEECSHHHHH---HH---HHHHHTTC--EEEEEECC-TTCCCCGGGCC--CCT-TCCEEEEESEET
T ss_pred             HHHHhccCC--cEEEEcCcHHHHH---HH---HHHHHhCC--CeEEEecC-CCCCCCHHHHh--ccC-CccEEEEEcCCC
Confidence            999999988  5444444333221   00   11223344  44454454 45789999998  555 899999987777


Q ss_pred             CC--CCChHHHHHHHHHh-CCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHH
Q 013217          181 PR--DFDYPRMRQIADAV-GALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES  256 (447)
Q Consensus       181 ~~--~~~~~~i~~ia~~~-g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~  256 (447)
                      |+  ..|+++|.++|+++ |+++++|++|+.|....     ++..+|++++|+||+++||.| |++++++      ++.+
T Consensus       142 ptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~~~-----~~~~~d~~~~s~~K~~~~~~G~g~~~~~~------~~~~  210 (362)
T 3ffr_A          142 SSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPKF-----DWTKIDSVFFSVQKCFGLPAGLGVWILND------RVIE  210 (362)
T ss_dssp             TTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSSCC-----CTTSCSEEEEETTSTTCCCSCCEEEEEEH------HHHH
T ss_pred             CcceeCCHHHHHHHHHhCCCCEEEEecccccCCccc-----ChhHCcEEEEecccccCCCCceEEEEECH------HHHH
Confidence            65  78999999999999 99999999987664322     222379999999999987777 8888887      5555


Q ss_pred             HhhhccC--------------------CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEe
Q 013217          257 AINNAVF--------------------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKL  315 (447)
Q Consensus       257 ~i~~~~~--------------------~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  315 (447)
                      ++.....                    ....++++...++++..+++.+...++++..+++.++++++.+.|.+. |+++
T Consensus       211 ~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  290 (362)
T 3ffr_A          211 KSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSF  290 (362)
T ss_dssp             HHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEE
T ss_pred             HhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCcee
Confidence            5443211                    112467788878788788886655567888999999999999999986 8887


Q ss_pred             eeCC---CCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHH
Q 013217          316 VSGG---SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH  392 (447)
Q Consensus       316 ~~~~---~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~  392 (447)
                      ..+.   .....+++.+..   +..++.+.|.++||.++.+..+     ...+.+|++++..++    ++|+++++++|+
T Consensus       291 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~g~~~-----~~~~~iRis~~~~~~----~e~i~~l~~~l~  358 (362)
T 3ffr_A          291 GVEDAKLRSMTTIVANTTM---LPGEINKILEPFDMAVGAGYGS-----KKETQIRIANFPAHS----LEQVHKLVQTLK  358 (362)
T ss_dssp             SSSCGGGBCSSEEEEEESS---CHHHHHHHHGGGTEEEEECSGG-----GTTTEEEEECCTTSC----HHHHHHHHHHHH
T ss_pred             ccCChhhcCCceEEEecCC---CHHHHHHHHHHCCeEEecCccc-----cCCCEEEEECCCCCC----HHHHHHHHHHHH
Confidence            7521   123445566543   6788999998889999754222     224689999988777    999999999998


Q ss_pred             HHH
Q 013217          393 EGV  395 (447)
Q Consensus       393 ~~l  395 (447)
                      +++
T Consensus       359 ~~~  361 (362)
T 3ffr_A          359 EKI  361 (362)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            753

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.96  E-value=2.7e-28  Score=240.08  Aligned_cols=337  Identities=15%  Similarity=0.100  Sum_probs=232.7

Q ss_pred             cCeeEecCCC-CCCHHHHHHHhhhhhccCCCCCCCC-cccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHH
Q 013217           21 KSLELIASEN-FTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA   98 (447)
Q Consensus        21 ~~i~l~~~~n-~~~~~v~~a~~~~~~~~~~~g~~~~-~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a   98 (447)
                      +.+.|..+.. +.|+.|++++.+.+.+.. ...+.. +.|..  .. ......++.+++++|++++.+   +.+++|++|
T Consensus        16 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~-~~~~~~~~~y~~--~~-~~~~~l~~~la~~~g~~~~~v---~~~~g~t~a   88 (390)
T 1elu_A           16 NKTYFNFGGQGILPTVALEAITAMYGYLQ-ENGPFSIAANQH--IQ-QLIAQLRQALAETFNVDPNTI---TITDNVTTG   88 (390)
T ss_dssp             TSEECCTTTCCCCCHHHHHHHHHHHHHHH-HHCSSSHHHHHH--HH-HHHHHHHHHHHHHTTSCGGGE---EEESSHHHH
T ss_pred             CeEEecCCccCCCCHHHHHHHHHHHHHHh-ccCCcchhhHHH--HH-HHHHHHHHHHHHHcCCCHHHE---EEeCChHHH
Confidence            3455544433 457889999988776521 111111 01111  11 222345678999999876532   334566699


Q ss_pred             HHHHHHHh-cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhhCCcEEEEc
Q 013217           99 NFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLIIAG  176 (447)
Q Consensus        99 ~~~~~~al-~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~~~klii~~  176 (447)
                      +..++.++ ++|||+|++.++.|.++.....    ..+...|.  +++.+++++ +++.+|+++|++.+++ ++++|+++
T Consensus        89 ~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~----~~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~  161 (390)
T 1elu_A           89 CDIVLWGLDWHQGDEILLTDCEHPGIIAIVQ----AIAARFGI--TYRFFPVAATLNQGDAAAVLANHLGP-KTRLVILS  161 (390)
T ss_dssp             HHHHHHHSCCCTTCEEEEETTCCHHHHHHHH----HHHHHHCC--EEEEECCGGGSSSSCHHHHHHTTCCT-TEEEEEEE
T ss_pred             HHHHHhCCCCCCCCEEEEecCcccHHHHHHH----HHHHHhCc--EEEEEcCCCCCCccchHHHHHHhcCC-CceEEEEe
Confidence            99999999 8999999999998877532100    00122344  445555542 4578999999999876 89999998


Q ss_pred             CCCCCC--CCChHHHHHHHH----HhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCc
Q 013217          177 ASAYPR--DFDYPRMRQIAD----AVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPV  249 (447)
Q Consensus       177 ~~~~~~--~~~~~~i~~ia~----~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~  249 (447)
                      +++||+  ..|+++|.++|+    ++|+++++|++|+.|....+...   .+.|++++|+||++.|+.| |++++++   
T Consensus       162 ~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~~---~~~d~~~~s~~K~~~~~~g~G~~~~~~---  235 (390)
T 1elu_A          162 HLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSR---LEVDYYAFTGHKWFAGPAGVGGLYIHG---  235 (390)
T ss_dssp             SBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTT---SCCSEEEEESSSTTCCCTTCEEEEECT---
T ss_pred             ccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCChhh---cCCCEEEccccccccCCCceEEEEECH---
Confidence            777764  789999999999    99999999999987654322211   1479999999998877777 9999987   


Q ss_pred             chhhHHHHhhhccC---------------------CCCCCCCcHHHHHHHHHHHHHhcChh-HHHHHHHHHHHHHHHHHH
Q 013217          250 LGVELESAINNAVF---------------------PGLQGGPHNHTIGGLAVCLKHAQSPE-FKVYQNKVVSNCRALASR  307 (447)
Q Consensus       250 ~~~~~~~~i~~~~~---------------------~~~~g~p~~~~~aal~~al~~~~~~~-~~~~~~~~~~~~~~l~~~  307 (447)
                         ++.+.+.....                     ....++++...++++..+++.+...+ +++..+++.++++++.+.
T Consensus       236 ---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~  312 (390)
T 1elu_A          236 ---DCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRG  312 (390)
T ss_dssp             ---TTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred             ---HhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence               45555443211                     01235677777777777787665444 678889999999999999


Q ss_pred             HHHC-CcEeeeC-CCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHH
Q 013217          308 LVEL-GYKLVSG-GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFV  385 (447)
Q Consensus       308 L~~~-g~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~  385 (447)
                      |.+. |++++.+ .....++++++. .+.+..++.+.|.++||.+..+.        .++.+|++++..++    ++|++
T Consensus       313 L~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~~~--------~~~~iRis~~~~~~----~~~i~  379 (390)
T 1elu_A          313 LNQLPHVHCLATSAPQAGLVSFTVD-SPLGHRAIVQKLEEQRIYLRTIA--------DPDCIRACCHYITD----EEEIN  379 (390)
T ss_dssp             HHHSTTEEESCSSCCSSSEEEEEEC-SSSCHHHHHHHHHHTTEECEEET--------TTTEEEEECCTTCC----HHHHH
T ss_pred             HHhcCCcEEecCccccccEEEEEcC-CCCCHHHHHHHHHHCCEEEEecC--------CCCeEEEecccCCC----HHHHH
Confidence            9985 8887753 123445556664 34567888898989999986532        24589999877777    99999


Q ss_pred             HHHHHHHH
Q 013217          386 AIADFIHE  393 (447)
Q Consensus       386 ~l~~~i~~  393 (447)
                      ++++.|++
T Consensus       380 ~~~~~l~~  387 (390)
T 1elu_A          380 HLLARLAD  387 (390)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHh
Confidence            99988864

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.96  E-value=9.4e-28  Score=235.79  Aligned_cols=335  Identities=15%  Similarity=0.082  Sum_probs=227.8

Q ss_pred             hcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC----CCccceeeecCCc
Q 013217           20 FKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD----ENKWGVNVQPLSG   95 (447)
Q Consensus        20 ~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~----~~~~~~~v~~~sG   95 (447)
                      .+.+.+.++...+++.|++++...+.+.   ++|        .... .....+++++++++..    +++   .+.+++|
T Consensus         4 ~~~~~~~p~p~~~~~~v~~a~~~~~~~~---~~~--------~~~~-~~~~~~~~l~~~~~~~~~~~~~~---v~~~~g~   68 (385)
T 2bkw_A            4 SVDTLLIPGPIILSGAVQKALDVPSLGH---TSP--------EFVS-IFQRVLKNTRAVFKSAAASKSQP---FVLAGSG   68 (385)
T ss_dssp             CCCEECSSSSCCCCHHHHHTTSCCCCCT---TSH--------HHHH-HHHHHHHHHHHHTTCCGGGTCEE---EEEESCT
T ss_pred             ccceeecCCCcCchHHHHHHHhcccccc---CCH--------HHHH-HHHHHHHHHHHHhCCCCCCCCce---EEEcCch
Confidence            4557888999999999999987654321   111        1111 2223456777777764    332   2334566


Q ss_pred             HHHHHHHHHHhc---CCCCEEEEecCCCCcccCCCccccccccccccceeEEEeccc-CCCCCCCCHHHHHHHhhhhCCc
Q 013217           96 SPANFEVYTAIL---KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-DESTGLVDYDMLEKTAILFRPK  171 (447)
Q Consensus        96 s~a~~~~~~al~---~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~id~~~l~~~~~~~~~k  171 (447)
                      ++|+..++.++.   +|||+|++++..+.+..    .  ...+...|.  +++.+++ + .++.+|+++|++++++.+|+
T Consensus        69 t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~----~--~~~~~~~g~--~~~~v~~~~-~~~~~d~~~l~~~l~~~~~~  139 (385)
T 2bkw_A           69 TLGWDIFASNFILSKAPNKNVLVVSTGTFSDR----F--ADCLRSYGA--QVDVVRPLK-IGESVPLELITEKLSQNSYG  139 (385)
T ss_dssp             THHHHHHHHHHSCTTCSCCEEEEECSSHHHHH----H--HHHHHHTTC--EEEEECCSS-TTSCCCHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHhccCCCCCeEEEEcCCcchHH----H--HHHHHHcCC--ceEEEecCC-CCCCCCHHHHHHHHhcCCCC
Confidence            799999999997   89999988754321110    0  012233454  5555556 4 46789999999999765799


Q ss_pred             EEEEcCCCCCC--CCChHHHHHHHHHh--CCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeec
Q 013217          172 LIIAGASAYPR--DFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKK  246 (447)
Q Consensus       172 lii~~~~~~~~--~~~~~~i~~ia~~~--g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~  246 (447)
                      +|++++++|++  ..|+++|.++|+++  |+++++|++|+.|....++...   ++|++++|+||++.||.| |++++++
T Consensus       140 ~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~d~~~~s~~K~~~~~~G~G~~~~~~  216 (385)
T 2bkw_A          140 AVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEW---GVDFALTASQKAIGAPAGLSISLCSS  216 (385)
T ss_dssp             EEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTT---TCSEEEEESSSTTCCCSCEEEEEECH
T ss_pred             EEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCcccccccc---CceEEEecCccccccCCcceEEEEcH
Confidence            99998777664  78999999999999  9999999999766543221111   479999999999998888 9999987


Q ss_pred             CCcchhhHHH-Hhhh----------------------ccC--CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHH
Q 013217          247 DPVLGVELES-AINN----------------------AVF--PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNC  301 (447)
Q Consensus       247 ~~~~~~~~~~-~i~~----------------------~~~--~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~  301 (447)
                            ++.+ ++..                      ...  ....++++...++++..+++.+...++++..+++.+++
T Consensus       217 ------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~  290 (385)
T 2bkw_A          217 ------RFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMS  290 (385)
T ss_dssp             ------HHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             ------HHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence                  4444 3310                      000  11135677777778877888765445777888999999


Q ss_pred             HHHHHHH-HHCCcEeeeCC----CCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEe-cCccc
Q 013217          302 RALASRL-VELGYKLVSGG----SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIG-SPAMT  375 (447)
Q Consensus       302 ~~l~~~L-~~~g~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig-~~~~~  375 (447)
                      +++.+.| ++.|+++..+.    ...+++++.+..    ..++.+.|.++||.++.+..    .....+.+|++ ++. +
T Consensus       291 ~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gi~v~~g~~----~~~~~~~iRis~~~~-~  361 (385)
T 2bkw_A          291 DWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVAD----PPDVIAFLKSHGVVIAGGIH----KDIGPKYIRIGHMGV-T  361 (385)
T ss_dssp             HHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSC----HHHHHHHHHHTTEECBCCCC----TTTGGGEEEECCCGG-G
T ss_pred             HHHHHHHHHhcCceecccCcccccCCceEEEecCC----HHHHHHHHHHCCeEEeCCCC----cccCCCEEEEEcccc-c
Confidence            9999999 87788876421    134566776642    67788888889999965321    11234689999 442 1


Q ss_pred             cCCCCHHHHHHHHHHHHHHHH
Q 013217          376 TRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       376 ~~g~~~~di~~l~~~i~~~l~  396 (447)
                      .+.++++|++++++.|+++++
T Consensus       362 ~~~~~~e~i~~~~~~l~~~~~  382 (385)
T 2bkw_A          362 ACNKNLPYMKNCFDLIKLALQ  382 (385)
T ss_dssp             TSSTTCTHHHHHHHHHHHHTT
T ss_pred             cccCCHHHHHHHHHHHHHHHH
Confidence            111238999999999988764

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=99.96  E-value=4.9e-28  Score=238.41  Aligned_cols=337  Identities=15%  Similarity=0.129  Sum_probs=233.2

Q ss_pred             cCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC--CCCCccceeeecCCc-
Q 013217           21 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLSG-   95 (447)
Q Consensus        21 ~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g--~~~~~~~~~v~~~sG-   95 (447)
                      ..|+|..+++.  .++.|++++.+.+.+. ..+|+..        ..++++.+++++++.+|  ++++.    |.+++| 
T Consensus        28 ~~i~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~--------~~~l~~~la~~l~~~~g~~~~~~~----i~~~~g~   94 (391)
T 3dzz_A           28 KELPMWIAEMDFKIAPEIMASMEEKLKVA-AFGYESV--------PAEYYKAVADWEEIEHRARPKEDW----CVFASGV   94 (391)
T ss_dssp             TCEECCSSCCSSCCCHHHHHHHHHHHTTC-CCCCBCC--------CHHHHHHHHHHHHHHHSCCCCGGG----EEEESCH
T ss_pred             CceeccccCCCCCCCHHHHHHHHHHHhcC-cCCCCCC--------CHHHHHHHHHHHHHHhCCCCCHHH----EEECCCH
Confidence            56788777653  5799999998877652 1233221        24566666788999988  44443    333555 


Q ss_pred             HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC--CCCCCCCHHHHHHHhhhhCCcEE
Q 013217           96 SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD--ESTGLVDYDMLEKTAILFRPKLI  173 (447)
Q Consensus        96 s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~id~~~l~~~~~~~~~kli  173 (447)
                      ++|+.+++.++++|||+|++..+.|.++..        .+...|.  +++.++++  ..++.+|+++|++++++.++++|
T Consensus        95 ~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v  164 (391)
T 3dzz_A           95 VPAISAMVRQFTSPGDQILVQEPVYNMFYS--------VIEGNGR--RVISSDLIYENSKYSVNWADLEEKLATPSVRMM  164 (391)
T ss_dssp             HHHHHHHHHHHSCTTCEEEECSSCCHHHHH--------HHHHTTC--EEEECCCEEETTEEECCHHHHHHHHTSTTEEEE
T ss_pred             HHHHHHHHHHhCCCCCeEEECCCCcHHHHH--------HHHHcCC--EEEEeeeeecCCceeecHHHHHHHHhccCceEE
Confidence            599999999999999999999998876532        2334454  55555553  23345999999999984489999


Q ss_pred             EEcCCCCCC--C---CChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-----ccc--EEEeCCCccc--CCCCC
Q 013217          174 IAGASAYPR--D---FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-----YCD--VVTTTTHKSL--RGPRG  239 (447)
Q Consensus       174 i~~~~~~~~--~---~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-----~~D--i~~~s~~K~l--~Gp~g  239 (447)
                      +++.++||+  .   .++++|.++|+++|+++|+|++|+. +...+....++.     ..|  ++++|+||++  +|.|.
T Consensus       165 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~  243 (391)
T 3dzz_A          165 VFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGD-LVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHA  243 (391)
T ss_dssp             EEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTT-CBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCC
T ss_pred             EEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEeccccc-ccCCCCCceehhhcCccccCcEEEEEeChhhccccchhh
Confidence            888777775  4   3688999999999999999999853 333332122221     146  8999999996  56778


Q ss_pred             ceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC--CcEeee
Q 013217          240 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVS  317 (447)
Q Consensus       240 G~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~  317 (447)
                      |+++++++     ++.+.+..........+++....++...+++.. ....++..+++.++++.+.+.|.+.  |+++..
T Consensus       244 G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  317 (391)
T 3dzz_A          244 ACAIIPNP-----DLRARAEESFFLAGIGEPNLLAIPAAIAAYEEG-HDWLRELKQVLRDNFAYAREFLAKEVPEVKVLD  317 (391)
T ss_dssp             EEEECCSH-----HHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECC
T ss_pred             eEEEECCH-----HHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEec
Confidence            99999742     677766543211112234445555555566652 2335777888899999999999884  888765


Q ss_pred             CCCCCeeEEecCCCCCCCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          318 GGSDNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       318 ~~~~~~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      + ..+.+.|+++...+.+..++.+.| +++||.+..+...+.   ..++.+|++++  ++    +++++++++.|.++++
T Consensus       318 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~~~iRis~~--~~----~~~i~~~l~~l~~~l~  387 (391)
T 3dzz_A          318 S-NASYLAWVDISALGMNAEDFCKYLREKTGLIISAGNGYRG---NGHEFVRINLA--CP----KELVIDGMQRLKQGVL  387 (391)
T ss_dssp             C-CBSSEEEEECGGGCSCHHHHHHHHHHHHCEECEESGGGCT---TGGGEEEEECC--SC----HHHHHHHHHHHHHHHH
T ss_pred             c-CceEEEEEehhhcCCCHHHHHHHHHHhCCEEEeCchhhCC---CCCCEEEEEec--CC----HHHHHHHHHHHHHHHH
Confidence            4 345566778765456788888888 589999975432211   12468999976  44    8999999999998876


Q ss_pred             H
Q 013217          397 I  397 (447)
Q Consensus       397 ~  397 (447)
                      .
T Consensus       388 ~  388 (391)
T 3dzz_A          388 N  388 (391)
T ss_dssp             T
T ss_pred             H
Confidence            4

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.96  E-value=1.3e-27  Score=236.33  Aligned_cols=333  Identities=18%  Similarity=0.199  Sum_probs=233.4

Q ss_pred             CeeEecCCCC---CCHHHHHHHhhhhhccCCCCCCCCcccCc-hhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHH
Q 013217           22 SLELIASENF---TSRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP   97 (447)
Q Consensus        22 ~i~l~~~~n~---~~~~v~~a~~~~~~~~~~~g~~~~~~~~g-~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~   97 (447)
                      .|++..+...   .++.+.+++.+.+.. |..++.+.+|..| .+...++    ++.+++++|++ +    .+.++||++
T Consensus        47 ~id~~~~~~~g~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~l----~~~la~~~g~~-~----~i~~~sGs~  116 (401)
T 1fc4_A           47 VINFCANNYLGLANHPDLIAAAKAGMDS-HGFGMASVRFICGTQDSHKEL----EQKLAAFLGME-D----AILYSSCFD  116 (401)
T ss_dssp             EEECCCSCTTSCTTCHHHHHHHHHHHHH-HCSCCCSCHHHHCCBHHHHHH----HHHHHHHHTCS-E----EEEESCHHH
T ss_pred             EEEeeccCcccccCCHHHHHHHHHHHHH-hCCCCCCCCcccCCcHHHHHH----HHHHHHHhCCC-c----EEEeCChHH
Confidence            3555555222   379999999887754 4444444443222 2333444    46888899987 3    345699999


Q ss_pred             HHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh-----CCcE
Q 013217           98 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKL  172 (447)
Q Consensus        98 a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~-----~~kl  172 (447)
                      ++..++.++++|||+|++.++.|++++.        .+...|.  +++.++      .+|++++++++++.     ++++
T Consensus       117 a~~~~~~~~~~~gd~v~~~~~~~~~~~~--------~~~~~g~--~~~~~~------~~d~~~l~~~l~~~~~~~~~~~~  180 (401)
T 1fc4_A          117 ANGGLFETLLGAEDAIISDALNHASIID--------GVRLCKA--KRYRYA------NNDMQELEARLKEAREAGARHVL  180 (401)
T ss_dssp             HHHTTHHHHCCTTCEEEEETTCCHHHHH--------HHHTSCS--EEEEEC------TTCHHHHHHHHHHHHHTTCSSEE
T ss_pred             HHHHHHHHHcCCCCEEEEcchhHHHHHH--------HHHHcCC--ceEEEC------CCCHHHHHHHHHHhhccCCCceE
Confidence            9999999999999999999988866531        2334454  444543      25899999988753     6899


Q ss_pred             EEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccc-cccC-C--CCC-CcccEEEeCCCcccCCCCCceEEee
Q 013217          173 IIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVA-ASVV-A--DPF-KYCDVVTTTTHKSLRGPRGGMIFFK  245 (447)
Q Consensus       173 ii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~-~~~~-~--~~~-~~~Di~~~s~~K~l~Gp~gG~i~~~  245 (447)
                      |++++++||+  ..++++|.++|+++|+++|+|++|+.|+.. .+.. +  ..+ ++.|++++|+||+++|+.||+++++
T Consensus       181 v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~gG~~~~~  260 (401)
T 1fc4_A          181 IATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAAR  260 (401)
T ss_dssp             EEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSCEEEEEC
T ss_pred             EEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEecchhhccCCCCEEEEcC
Confidence            9998777765  778999999999999999999998767653 2210 0  111 2479999999999966668999998


Q ss_pred             cCCcchhhHHHHhhhccCCC-CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCee
Q 013217          246 KDPVLGVELESAINNAVFPG-LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHL  324 (447)
Q Consensus       246 ~~~~~~~~~~~~i~~~~~~~-~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~  324 (447)
                      +      ++.+.+.....+. ..++++....+++..+++....  .++..+++.++++++.+.|++.|+++..  ...++
T Consensus       261 ~------~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~~  330 (401)
T 1fc4_A          261 K------EVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEA--GSELRDRLWANARQFREQMSAAGFTLAG--ADHAI  330 (401)
T ss_dssp             H------HHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTTCCBCC--SSSSE
T ss_pred             H------HHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHcCCcccC--CCCCE
Confidence            7      6777665432111 1335566666666667776542  3567888999999999999988887763  34566


Q ss_pred             EEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          325 VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       325 ~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      +++++.. +.+..++.+.|.++||.+..+..++.  +...+.+|++++..++    ++|++++++.|+++++.
T Consensus       331 ~~~~~~~-~~~~~~l~~~l~~~gi~v~~~~~~~~--~~~~~~iRi~~~~~~~----~~~i~~~~~~l~~~~~~  396 (401)
T 1fc4_A          331 IPVMLGD-AVVAQKFARELQKEGIYVTGFFYPVV--PKGQARIRTQMSAAHT----PEQITRAVEAFTRIGKQ  396 (401)
T ss_dssp             EEEEEEC-HHHHHHHHHHHHHTTEECCEECTTSS--CTTCEEEEEECCTTCC----HHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCC-hHHHHHHHHHHHHCCcEEeeecCCCC--CCCCceEEEEeCCCCC----HHHHHHHHHHHHHHHHH
Confidence            7777642 23456788888888999976433321  1123579999887777    99999999999988764

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.96  E-value=6.3e-27  Score=227.48  Aligned_cols=320  Identities=12%  Similarity=0.062  Sum_probs=230.7

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCc-H
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-S   96 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sG-s   96 (447)
                      +..|+|..++|.  .++.+++++...+.+  ..+||.       ....++    ++++++++|+++++    |.+++| +
T Consensus        16 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~-------~~~~~l----~~~la~~~~~~~~~----i~~~~g~~   78 (354)
T 3ly1_A           16 DNPIRINFNENPLGMSPKAQAAARDAVVK--ANRYAK-------NEILML----GNKLAAHHQVEAPS----ILLTAGSS   78 (354)
T ss_dssp             SSCEECSSCCCSSCCCHHHHHHHHHTGGG--TTSCCH-------HHHHHH----HHHHHHHTTSCGGG----EEEESHHH
T ss_pred             CceEEccCCCCCCCCCHHHHHHHHHHHhh--CcCCCC-------CchHHH----HHHHHHHhCCChHH----EEEeCChH
Confidence            356888888885  579999999887764  223321       222333    47889999987653    333555 4


Q ss_pred             HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhh-hCCcEEEE
Q 013217           97 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL-FRPKLIIA  175 (447)
Q Consensus        97 ~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~-~~~klii~  175 (447)
                      +|+..++.++++|||+|++..+.|.++..        .+...|.  +++.++++ .++.+|++++++++++ .++++|++
T Consensus        79 ~a~~~~~~~l~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~-~~~~~d~~~l~~~l~~~~~~~~v~l  147 (354)
T 3ly1_A           79 EGIRAAIEAYASLEAQLVIPELTYGDGEH--------FAKIAGM--KVTKVKML-DNWAFDIEGLKAAVAAYSGPSIVYL  147 (354)
T ss_dssp             HHHHHHHHHHCCTTCEEEEESSSCTHHHH--------HHHHTTC--EEEEECCC-TTSCCCHHHHHHHHHTCSSCEEEEE
T ss_pred             HHHHHHHHHHhCCCCeEEECCCCchHHHH--------HHHHcCC--EEEEecCC-CCCCCCHHHHHHHhccCCCCCEEEE
Confidence            99999999999999999999988876531        2334454  55666666 3588999999999983 38999999


Q ss_pred             cCCCCCC--CCChHHHHHHHHH--hCCEEEEehhhhccccccccCCCCCC------cccEEEeCCCccc--CCCCCceEE
Q 013217          176 GASAYPR--DFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK------YCDVVTTTTHKSL--RGPRGGMIF  243 (447)
Q Consensus       176 ~~~~~~~--~~~~~~i~~ia~~--~g~~livD~a~~~g~~~~~~~~~~~~------~~Di~~~s~~K~l--~Gp~gG~i~  243 (447)
                      +.++||+  ..+.+++.++++.  +|+++++|++|. ++...+.....+.      ..+++++|+||++  +|.|.|+++
T Consensus       148 ~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~  226 (354)
T 3ly1_A          148 VNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYA-EFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAV  226 (354)
T ss_dssp             ESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTG-GGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEE
T ss_pred             eCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHH-HhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeee
Confidence            8778775  7788888888887  999999999985 3333322112111      2458899999997  466779999


Q ss_pred             eecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCe
Q 013217          244 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNH  323 (447)
Q Consensus       244 ~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~  323 (447)
                      +++      ++.+.+.....+   ++++....+++..+++..  ..+++..+++.++++.+.+.|.+.|+++..+  ...
T Consensus       227 ~~~------~~~~~~~~~~~~---~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~--~~~  293 (354)
T 3ly1_A          227 AHP------TVIALMGRYVAG---EKINFSGVDAALASMNDS--AFITYSKKSNDVSRQILLKALEDLKLPYLPS--EGN  293 (354)
T ss_dssp             CCH------HHHHHHGGGTTC---SCCCHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC--CSS
T ss_pred             cCH------HHHHHHHHhcCC---CCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHCCCeECCC--Cce
Confidence            977      788877765443   355666665555555532  3457788889999999999998888877643  344


Q ss_pred             eEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          324 LVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       324 ~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      ++++++..   +..++.+.|.++||.++ +..++     .++.+|+++.   +    ++|++++++.|+++++.
T Consensus       294 ~~~~~~~~---~~~~~~~~l~~~gi~v~-g~~~~-----~~~~iRis~~---~----~~~i~~~~~~l~~~l~~  351 (354)
T 3ly1_A          294 FVFHQLVV---PLKDYQTHMADAGVLIG-RAFPP-----ADNWCRISLG---T----PQEMQWVADTMREFRKK  351 (354)
T ss_dssp             EEEEECSS---CHHHHHHHHHHTTEECC-CCCTT-----CTTEEEEECC---C----HHHHHHHHHHHHHHHHT
T ss_pred             EEEEECCC---CHHHHHHHHHHCCEEEe-ecCCC-----CCCEEEEEcC---C----HHHHHHHHHHHHHHHHh
Confidence            56777753   67888899989999987 43221     3568999964   4    89999999999988763

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.96  E-value=7e-28  Score=236.72  Aligned_cols=311  Identities=10%  Similarity=0.081  Sum_probs=212.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccc
Q 013217           59 GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGT  138 (447)
Q Consensus        59 ~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~  138 (447)
                      .+.++.+.++ .+++++++++|++ +   ..+.+.||++|+.+++. +++|||+|+++++.|.++.   +.   ......
T Consensus        29 ~~~~~~~~~~-~~~~~l~~~~~~~-~---~v~~~~sgt~a~~~~~~-~~~~gd~vi~~~~~~~~~~---~~---~~~~~~   96 (379)
T 3ke3_A           29 MSKAFQEVMN-DLLSNLKTVYNAE-A---AVIIPGSGTYGMEAVAR-QLTIDEDCLIIRNGWFSYR---WT---QILEKG   96 (379)
T ss_dssp             TSHHHHHHHH-HHHHHHHHHHTCS-E---EEEEESCHHHHHHHHHH-HHCTTCEEEEEECSHHHHH---HH---HHHHHH
T ss_pred             CCHHHHHHHH-HHHHHHHHHhCCC-C---EEEEcCChhHHHHHHHH-hCCCCCeEEEEeCCchhHH---HH---HHHHHh
Confidence            3455554444 6678999999987 2   23445688899988765 4579999999987664431   00   011222


Q ss_pred             cceeEEEecccCCC-------C-CCCCHHHHHHHhhhhCCcEEEEcCCCCC-C-CCC---hHHHHHHHHHhCCEEEEehh
Q 013217          139 SIYFESMPYRLDES-------T-GLVDYDMLEKTAILFRPKLIIAGASAYP-R-DFD---YPRMRQIADAVGALLMMDMA  205 (447)
Q Consensus       139 g~~~~~~~~~~~~~-------~-~~id~~~l~~~~~~~~~klii~~~~~~~-~-~~~---~~~i~~ia~~~g~~livD~a  205 (447)
                      |..++++.++.+..       . +.+|++++++++++.+|++|++...+++ + ..|   +++|.++|+++|+++++|++
T Consensus        97 g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~  176 (379)
T 3ke3_A           97 KFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCI  176 (379)
T ss_dssp             CCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECT
T ss_pred             CCCCceEEEeccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEec
Confidence            32224444333211       1 2589999999996558999888754443 3 678   99999999999999999999


Q ss_pred             hhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhccC------------------CC-
Q 013217          206 HISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVF------------------PG-  265 (447)
Q Consensus       206 ~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~~~------------------~~-  265 (447)
                      |+ |....+....   ++|++++|+||+|+||.| |++++++      ++.+.+.....                  .+ 
T Consensus       177 ~~-g~~~~~~~~~---~~d~~~~s~~K~l~~~~g~g~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~  246 (379)
T 3ke3_A          177 AS-GCVWLDMKEL---GIDVLISAPQKGWSSTPCAGLVMLSA------AAIKKVESTESNCFSLDLKQWLTIMRAYENGG  246 (379)
T ss_dssp             TC-TTCCCCHHHH---TCSEEEECTTTTTCSCCCEEEEEECH------HHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTS
T ss_pred             cc-CCcccccccc---CCCEEEecchhhcCCCCceEEEEECH------HHHHhhhcCCCCceeecHHHHHHHHHhhhccC
Confidence            86 6332211111   589999999999999888 9999987      56555543110                  01 


Q ss_pred             --CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCC-CCe-eEEecCCCCCCCHHHHHH
Q 013217          266 --LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS-DNH-LVLVDLRPMGIDGARVEK  341 (447)
Q Consensus       266 --~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~-~~~v~~~~~~~~~~~~~~  341 (447)
                        +.++++...++++.++++.+...+++++.++..++++++++.|.+.|++++.+.. .+. +..+...  + ......+
T Consensus       247 ~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~--~-~~~~~~~  323 (379)
T 3ke3_A          247 HAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDKGIESVAAEGFEAPGVVVSYTE--R-DDMHKGS  323 (379)
T ss_dssp             CCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSBCTTCBCSSEEEEECS--C-HHHHSSH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCEecCCccccCceEEEEccC--C-cchHHHH
Confidence              2358888999999999998876678888999999999999999999988765421 122 2222221  1 1112256


Q ss_pred             HHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          342 ILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       342 ~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      .|.++||.+..+..|....+...+.+|++++.+++    ++|+++++++|+++++..
T Consensus       324 ~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t----~~di~~~~~~l~~~l~~~  376 (379)
T 3ke3_A          324 AFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDK----LTDIDGTVERFEKALDEV  376 (379)
T ss_dssp             HHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHH----HTCHHHHHHHHHHHHHHH
T ss_pred             HHHHCCeEEeCCccccccccCcCCEEEEeCCcCCC----HHHHHHHHHHHHHHHHHh
Confidence            78889998865432211112335789999998888    999999999999888754

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=99.96  E-value=5.1e-27  Score=231.11  Aligned_cols=348  Identities=14%  Similarity=0.116  Sum_probs=237.5

Q ss_pred             HHHHHHHHHHHHHhhcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC--C
Q 013217            6 PEVCEIITKEKERQFKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--L   81 (447)
Q Consensus         6 ~~~~~~~~~e~~~~~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g--~   81 (447)
                      ..+|+...++.. .+..|+|..+++.  .++.|.+++...+.+. ..+|+.     +   ...+++.+++++++.+|  +
T Consensus        19 ~~~~d~~~~~~~-~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~-----~---~~~~~~~l~~~l~~~~g~~~   88 (391)
T 4dq6_A           19 SSKWSEMEKKYG-TNDLLPMWVADMDFKAAPCIIDSLKNRLEQE-IYGYTT-----R---PDSYNESIVNWLYRRHNWKI   88 (391)
T ss_dssp             BHHHHCHHHHHS-CSCSEECCSSSCSSCCCHHHHHHHHHHHTTC-CCCCBC-----C---CHHHHHHHHHHHHHHHCCCC
T ss_pred             ceeeeecccccC-CCCceeccccCCCCCCCHHHHHHHHHHHhCC-CCCCCC-----C---CHHHHHHHHHHHHHHhCCCC
Confidence            345554433211 2566888877774  4799999998877642 122322     1   13555566788999999  5


Q ss_pred             CCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC---CCCCCCCH
Q 013217           82 DENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD---ESTGLVDY  158 (447)
Q Consensus        82 ~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~id~  158 (447)
                      +++.+   +.+++|++|+..++.++++|||+|++..+.|.++..        .+...|.  +++.++++   ..++.+|+
T Consensus        89 ~~~~v---~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~~~d~  155 (391)
T 4dq6_A           89 KSEWL---IYSPGVIPAISLLINELTKANDKIMIQEPVYSPFNS--------VVKNNNR--ELIISPLQKLENGNYIMDY  155 (391)
T ss_dssp             CGGGE---EEESCHHHHHHHHHHHHSCTTCEEEECSSCCTHHHH--------HHHHTTC--EEEECCCEECTTSCEECCH
T ss_pred             cHHHe---EEcCChHHHHHHHHHHhCCCCCEEEEcCCCCHHHHH--------HHHHcCC--eEEeeeeeecCCCceEeeH
Confidence            55432   223444589999999999999999999988876532        2334454  55555554   23456999


Q ss_pred             HHHHHHhhhhCCcEEEEcCCCCCC--C---CChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCc-------ccEE
Q 013217          159 DMLEKTAILFRPKLIIAGASAYPR--D---FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKY-------CDVV  226 (447)
Q Consensus       159 ~~l~~~~~~~~~klii~~~~~~~~--~---~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~-------~Di~  226 (447)
                      +++++++++  +++|+++.++||+  .   .++++|.++|+++|+++|+|++|+. +...+....++..       ..++
T Consensus       156 ~~l~~~l~~--~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~~~i~  232 (391)
T 4dq6_A          156 EDIENKIKD--VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSD-IILKKHKHIPMASISKEFEKNTIT  232 (391)
T ss_dssp             HHHHHHCTT--EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTT-CBCTTCCCCCGGGSCHHHHHTEEE
T ss_pred             HHHHHHhhc--CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccc-cccCCCCccCHHHcCccccCcEEE
Confidence            999999976  8999888778775  4   3578999999999999999999844 3333322222221       2288


Q ss_pred             EeCCCccc--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHH
Q 013217          227 TTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL  304 (447)
Q Consensus       227 ~~s~~K~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l  304 (447)
                      +.|+||++  +|.|.|+++++++     ++.+.+.........++++....++...+++.. ....++..+++.++++.+
T Consensus       233 ~~s~sK~~g~~G~r~G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l  306 (391)
T 4dq6_A          233 CMAPTKTFNIAGLQSSYVVLPDE-----KDYKLLDDAFTRIDIKRNNCFSLVATEASYNNG-ESWLESFLEYLESNIDFA  306 (391)
T ss_dssp             EECSHHHHTCGGGCCEEEECCSH-----HHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHH
T ss_pred             EEechhhccCcccceEEEEeCCH-----HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhch-HHHHHHHHHHHHHHHHHH
Confidence            99999987  5667799998763     566666554333334566776666666677653 233577788889999999


Q ss_pred             HHHHHH--CCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhc-CeEEccCCCCCCCCCCCCCeEEEecCccccCCCCH
Q 013217          305 ASRLVE--LGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMA-SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSE  381 (447)
Q Consensus       305 ~~~L~~--~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~-gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~  381 (447)
                      .+.|++  .|+++..+ ..+.+.|+++...+.+..++.+.|.++ ||.+..+...+.   ...+.+|++++  ++    +
T Consensus       307 ~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~~~iRis~~--~~----~  376 (391)
T 4dq6_A          307 IKYINENMPKLKVRKP-EGTYLLWVDFSALGLSDEELESILVQKGKVALNQGNSFGI---GGSGYQRINLA--CP----R  376 (391)
T ss_dssp             HHHHHHHCTTSEECCC-SBSSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCT---TCTTEEEEECC--SC----H
T ss_pred             HHHHHhhCCCCEecCC-CccEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCC---CCCCeEEEEEc--CC----H
Confidence            999987  38887654 345666788764456788888888776 999975422221   12468999976  44    8


Q ss_pred             HHHHHHHHHHHHHH
Q 013217          382 KEFVAIADFIHEGV  395 (447)
Q Consensus       382 ~di~~l~~~i~~~l  395 (447)
                      ++++++++.|++++
T Consensus       377 ~~i~~~l~~l~~~l  390 (391)
T 4dq6_A          377 SMLEEALIRIKNAI  390 (391)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998765

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.96  E-value=1.4e-26  Score=226.12  Aligned_cols=319  Identities=13%  Similarity=0.041  Sum_probs=228.8

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCc-H
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-S   96 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sG-s   96 (447)
                      +..|+|..++|+  +++.|++++...+..  ..+|+...      . .+++    +.+++++|++++++    .+++| +
T Consensus        30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~~~------~-~~lr----~~la~~~~~~~~~v----~~~~g~~   92 (365)
T 3get_A           30 KEVIKLASNENPFGTPPKAIECLRQNANK--AHLYPDDS------M-IELK----STLAQKYKVQNENI----IIGAGSD   92 (365)
T ss_dssp             SCCEECSSCCCTTCSCHHHHHHHHHHGGG--TTSCCCTT------C-HHHH----HHHHHHHTCCGGGE----EEESSHH
T ss_pred             CceEEecCCCCCCCCCHHHHHHHHHHHHh--hccCCCCC------h-HHHH----HHHHHHhCCCcceE----EECCCHH
Confidence            467899888886  479999999887764  23454431      1 2343    67888899876532    33555 5


Q ss_pred             HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 013217           97 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG  176 (447)
Q Consensus        97 ~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~  176 (447)
                      +++..++.++++|||+|++..+.|.++..        .+...|.  +++.++++.+++ +|++++++++++ +|++|+++
T Consensus        93 ~a~~~~~~~l~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~-~d~~~l~~~l~~-~~~~v~~~  160 (365)
T 3get_A           93 QVIEFAIHSKLNSKNAFLQAGVTFAMYEI--------YAKQCGA--KCYKTQSITHNL-DEFKKLYETHKD-EIKLIFLC  160 (365)
T ss_dssp             HHHHHHHHHHCCTTCEEEECSSCCTHHHH--------HHHHHTC--EEEECSSSSCCH-HHHHHHHHHTTT-TEEEEEEE
T ss_pred             HHHHHHHHHHhCCCCEEEEeCCChHHHHH--------HHHHcCC--EEEEEecCCCCC-CCHHHHHHHhCC-CCCEEEEc
Confidence            89999999999999999999988766531        2334454  555655533567 999999999986 89999998


Q ss_pred             CCCCCC--CCChHHHHHHHH--HhCCEEEEehhhhcccc--ccccCCCCCC-----cccEEEeCCCccc--CCCCCceEE
Q 013217          177 ASAYPR--DFDYPRMRQIAD--AVGALLMMDMAHISGLV--AASVVADPFK-----YCDVVTTTTHKSL--RGPRGGMIF  243 (447)
Q Consensus       177 ~~~~~~--~~~~~~i~~ia~--~~g~~livD~a~~~g~~--~~~~~~~~~~-----~~Di~~~s~~K~l--~Gp~gG~i~  243 (447)
                      .++||+  ..+.+++.++++  ++|+++++|++|..+..  ..+.......     ..+++++|+||++  +|.|.|+++
T Consensus       161 ~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~  240 (365)
T 3get_A          161 LPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGI  240 (365)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEE
T ss_pred             CCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEE
Confidence            777775  778888888888  67999999999864321  1111111111     2468899999996  567779999


Q ss_pred             eecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCe
Q 013217          244 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNH  323 (447)
Q Consensus       244 ~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~  323 (447)
                      +++      ++.+.+.....+.   +++....+++..+++..  .+.++..+++.++++.+.+.|.+.|+++..+  ...
T Consensus       241 ~~~------~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~--~~~  307 (365)
T 3get_A          241 ANA------NIISAFYKLRAPF---NVSNLALKAAVAAMDDD--EFTEKTLENNFSQMELYKEFAKKHNIKIIDS--YTN  307 (365)
T ss_dssp             ECH------HHHHHHHHHSCTT---CSCHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHHHHHHTTCEECCC--SSS
T ss_pred             cCH------HHHHHHHHhcCCC---CcCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHhCCCEECCC--CCe
Confidence            976      7877776654332   35666666666666532  3457788889999999999999989887643  234


Q ss_pred             eEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          324 LVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       324 ~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      ++++++...  +..++.+.|.++||.++.+..++      .+.+|+++.   +    ++|+++++++|++++
T Consensus       308 ~~~~~~~~~--~~~~~~~~l~~~gi~v~~g~~~~------~~~iRis~~---~----~~~i~~l~~~l~~~l  364 (365)
T 3get_A          308 FITYFFDEK--NSTDLSEKLLKKGIIIRNLKSYG------LNAIRITIG---T----SYENEKFFTEFDKIL  364 (365)
T ss_dssp             EEEEECSSS--CHHHHHHHHHTTTEECEECGGGT------CSEEEEECC---C----HHHHHHHHHHHHHHH
T ss_pred             EEEEECCCC--CHHHHHHHHHHCCEEEEECccCC------CCEEEEEcC---C----HHHHHHHHHHHHHHh
Confidence            567777543  67889999988999997543222      468999965   4    899999999998765

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.96  E-value=3.8e-27  Score=231.66  Aligned_cols=331  Identities=13%  Similarity=0.110  Sum_probs=229.2

Q ss_pred             CeeEecCCC---CCCHHHHHHHhhhhhccCCCCCCCCccc-CchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHH
Q 013217           22 SLELIASEN---FTSRAVMEAVGSCLTNKYSEGLPGKRYY-GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP   97 (447)
Q Consensus        22 ~i~l~~~~n---~~~~~v~~a~~~~~~~~~~~g~~~~~~~-~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~   97 (447)
                      .|++..+++   ..++.+++++...+.+ +..+++..+|. +..+...++    ++.+++++|++.     .+.++||++
T Consensus        41 ~id~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~l----~~~la~~~g~~~-----~i~~~sGt~  110 (384)
T 1bs0_A           41 YLNFSSNDYLGLSHHPQIIRAWQQGAEQ-FGIGSGGSGHVSGYSVVHQAL----EEELAEWLGYSR-----ALLFISGFA  110 (384)
T ss_dssp             EEECSCCCTTSGGGCHHHHHHHHHHHHH-HCSCCCSBTTTTCCCHHHHHH----HHHHHHHHTCSE-----EEEESCHHH
T ss_pred             EEEeeccCccCCCCCHHHHHHHHHHHHH-hCCCCCCcCcccCChHHHHHH----HHHHHHHhCCCc-----EEEeCCcHH
Confidence            467666665   3679999999888754 22334433432 222333444    467888899862     455699999


Q ss_pred             HHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh--CCcEEEE
Q 013217           98 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIA  175 (447)
Q Consensus        98 a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~--~~klii~  175 (447)
                      ++..++.++++|||+|++.++.|+++..        .+...|.  +++.++      .+|++++++++++.  ++++|++
T Consensus       111 a~~~~~~~~~~~gd~v~~~~~~~~~~~~--------~~~~~g~--~~~~~~------~~d~~~l~~~l~~~~~~~~~v~~  174 (384)
T 1bs0_A          111 ANQAVIAAMMAKEDRIAADRLSHASLLE--------AASLSPS--QLRRFA------HNDVTHLARLLASPCPGQQMVVT  174 (384)
T ss_dssp             HHHHHHHHHCCTTCEEEEETTCCHHHHH--------HHHTSSS--EEEEEC------TTCHHHHHHHHHSCCSSCEEEEE
T ss_pred             HHHHHHHHhCCCCcEEEEcccccHHHHH--------HHHHcCC--CEEEeC------CCCHHHHHHHHHhcCCCCeEEEE
Confidence            9999999999999999999988876532        2334454  444443      25899999998763  2678888


Q ss_pred             cCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccc-cccC-CCCC-CcccEEEeCCCcccCCCCCceEEeecCCcc
Q 013217          176 GASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVA-ASVV-ADPF-KYCDVVTTTTHKSLRGPRGGMIFFKKDPVL  250 (447)
Q Consensus       176 ~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~-~~~~-~~~~-~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~  250 (447)
                      ++++||+  ..|+++|.++|+++|+++++|++|+.|... .+.. ...+ ...|++++|+||+++ |.||++++++    
T Consensus       175 ~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~GG~~~~~~----  249 (384)
T 1bs0_A          175 EGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFG-VSGAAVLCSS----  249 (384)
T ss_dssp             ESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTS-SCCEEEEECH----
T ss_pred             eCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchhh-ccCcEEEeCH----
Confidence            7777775  779999999999999999999999776532 1110 0111 137899999999985 7889999987    


Q ss_pred             hhhHHHHhhhccCCC-CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecC
Q 013217          251 GVELESAINNAVFPG-LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDL  329 (447)
Q Consensus       251 ~~~~~~~i~~~~~~~-~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~  329 (447)
                        ++.+.+.....+. ..++++....+++..+++.+...+.++..+++.++++++.+.|++.|+++..  ...+++++.+
T Consensus       250 --~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~~~~~~~  325 (384)
T 1bs0_A          250 --TVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLAD--SCSAIQPLIV  325 (384)
T ss_dssp             --HHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEECS--CCSSBCCEEE
T ss_pred             --HHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcCCcccC--CCCCEEEEEe
Confidence              6766665431111 1224566666666667776543245677888999999999999988888763  2345556665


Q ss_pred             CCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          330 RPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       330 ~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                      .. +.+..++.+.|.++||.+..+..|+.  +...+.+|++++..++    ++|++++++.|+++
T Consensus       326 ~~-~~~~~~l~~~l~~~gi~v~~~~~~~~--~~~~~~~Ri~~~~~~~----~~~i~~~~~~l~~~  383 (384)
T 1bs0_A          326 GD-NSRALQLAEKLRQQGCWVTAIRPPTV--PAGTARLRLTLTAAHE----MQDIDRLLEVLHGN  383 (384)
T ss_dssp             ES-HHHHHHHHHHHHHTTEECCEECTTSS--CTTCEEECCBCCTTCC----HHHHHHHHHHHHHH
T ss_pred             CC-HHHHHHHHHHHHHCCcEEEeecCCCC--CCCCceEEEEEcCCCC----HHHHHHHHHHHHhh
Confidence            32 23456788888888999976543321  1223579999887666    99999999988764

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.96  E-value=1.5e-26  Score=227.72  Aligned_cols=332  Identities=17%  Similarity=0.116  Sum_probs=224.3

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCc
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSG   95 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sG   95 (447)
                      +..|+|..+++.  .++.+.+++...+.... .+|+..      ....++++...+++.+.+|.+  ++    +|.+++|
T Consensus        31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~~------~g~~~lr~~ia~~~~~~~g~~~~~~----~i~~t~g   99 (385)
T 1b5p_A           31 VDLVALTAGEPDFDTPEHVKEAARRALAQGK-TKYAPP------AGIPELREALAEKFRRENGLSVTPE----ETIVTVG   99 (385)
T ss_dssp             CCCEECCCSSCSSCCCHHHHHHHHHHHHTTC-CSCCCT------TCCHHHHHHHHHHHHHTTCCCCCGG----GEEEESH
T ss_pred             CCEEEecCCCCCCCCCHHHHHHHHHHHhcCC-CCCCCC------CCCHHHHHHHHHHHHHHhCCCCChH----HEEEcCC
Confidence            456888777773  46889999887765422 234322      112355555556777767754  43    2334666


Q ss_pred             H-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhhCCcEE
Q 013217           96 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLI  173 (447)
Q Consensus        96 s-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~~~kli  173 (447)
                      + +|+..++.++++|||+|++.+|.|.++..        .+...|.  +++.+++++ +++.+|++++++++++ +|++|
T Consensus       100 ~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v  168 (385)
T 1b5p_A          100 GSQALFNLFQAILDPGDEVIVLSPYWVSYPE--------MVRFAGG--VVVEVETLPEEGFVPDPERVRRAITP-RTKAL  168 (385)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEEESCCTHHHH--------HHHHTTC--EEEEEECCGGGTTCCCHHHHHTTCCT-TEEEE
T ss_pred             hHHHHHHHHHHhcCCCCEEEEcCCCchhHHH--------HHHHcCC--EEEEeecCcccCCCCCHHHHHHhcCC-CCEEE
Confidence            5 99999999999999999999998866431        2334454  555555654 3568999999999876 78999


Q ss_pred             EEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC----cccEEEeCCCccc--CCCCCceE
Q 013217          174 IAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSL--RGPRGGMI  242 (447)
Q Consensus       174 i~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~----~~Di~~~s~~K~l--~Gp~gG~i  242 (447)
                      ++++++||+  ..+   +++|.++|+++|+++|+|++|+. +...+ ...++.    ..+++++|+||++  +|.|.|++
T Consensus       169 ~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~~-~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~  246 (385)
T 1b5p_A          169 VVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEH-LLYEG-EHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYA  246 (385)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTT-CBSSS-CCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEE
T ss_pred             EEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchh-cccCC-CCCCHHHcCCCCEEEEEechhhcCCcccceEEE
Confidence            888888875  444   78999999999999999999753 33322 111111    3478899999987  46778999


Q ss_pred             EeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHH---hcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCC
Q 013217          243 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH---AQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGG  319 (447)
Q Consensus       243 ~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~  319 (447)
                      ++++      ++.+.+......+..+. +.....+...+++.   .. ...++..+++.++++.+.+.|.+.|+++..+ 
T Consensus       247 ~~~~------~~~~~l~~~~~~~~~~~-~~~~~~a~~~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-  317 (385)
T 1b5p_A          247 CGPK------EVIKAMASVSRQSTTSP-DTIAQWATLEALTNQEASR-AFVEMAREAYRRRRDLLLEGLTALGLKAVRP-  317 (385)
T ss_dssp             ECCH------HHHHHHHHHHHTTTCSC-CHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC-
T ss_pred             EeCH------HHHHHHHHHHhhccCCC-CHHHHHHHHHHHhCCCcch-HHHHHHHHHHHHHHHHHHHHHHHCCCeecCC-
Confidence            9987      67776655433332233 33333334445543   21 3356677888888999999998878876543 


Q ss_pred             CCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          320 SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       320 ~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      ..+++.|+++...+.+..++.+.|.++||.+..+...+.     ++.+|+++.  ++    ++++++..+.|.+++
T Consensus       318 ~~~~~~~~~~~~~~~~~~~l~~~l~~~gv~v~~g~~f~~-----~~~iRis~~--~~----~~~i~~~l~~l~~~l  382 (385)
T 1b5p_A          318 SGAFYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAA-----FGHVRLSYA--TS----EENLRKALERFARVL  382 (385)
T ss_dssp             SBTTEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGTC-----TTEEEEECC--SC----HHHHHHHHHHGGGGC
T ss_pred             CeeEEEEEecCCCCCCHHHHHHHHHHCCeEEecccccCC-----CCeEEEEec--CC----HHHHHHHHHHHHHHH
Confidence            345566777754456778888888899999865432211     468999975  44    788888877776554

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=99.96  E-value=1.3e-26  Score=228.40  Aligned_cols=339  Identities=12%  Similarity=0.054  Sum_probs=225.0

Q ss_pred             HhhcCeeEecCCCCC--CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CCCccceeeecC
Q 013217           18 RQFKSLELIASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPL   93 (447)
Q Consensus        18 ~~~~~i~l~~~~n~~--~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~~~~~v~~~   93 (447)
                      ..+..|+|..+++..  ++.+++++...+.+.. .+|+..      ....++++...+++.+.+|.  +++++   +.++
T Consensus        29 ~g~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~-~~y~~~------~g~~~lr~~ia~~~~~~~g~~~~~~~v---~~t~   98 (391)
T 3h14_A           29 AGRRIIHMEVGQPGTGAPRGAVEALAKSLETDA-LGYTVA------LGLPALRQRIARLYGEWYGVDLDPGRV---VITP   98 (391)
T ss_dssp             TTCCCEECCCSSCSSCSCHHHHHHHHHHHC-----------------CCHHHHHHHHHHHHHHHCCCCCGGGE---EEES
T ss_pred             cCCCeEEccCCCCCCCCCHHHHHHHHHHHhcCC-CCCCCC------CChHHHHHHHHHHHHHHhCCCCCHHHE---EEec
Confidence            345778998888753  7889999988776421 233322      11235555555677777774  44432   2234


Q ss_pred             CcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-CCCCCHHHHHHHhhhhCCcE
Q 013217           94 SGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKL  172 (447)
Q Consensus        94 sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~~~~~~~kl  172 (447)
                      +|++|+..++.++++|||+|++..|.|.++..        .+...|.  +++.++++++ ++.+|+++++++    ++++
T Consensus        99 g~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~----~~~~  164 (391)
T 3h14_A           99 GSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQ--------ILRALGL--VPVDLPTAPENRLQPVPADFAGL----DLAG  164 (391)
T ss_dssp             SHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHHTTC--EEEEEECCGGGTTSCCHHHHTTS----CCSE
T ss_pred             ChHHHHHHHHHHhcCCCCEEEEcCCCCccHHH--------HHHHcCC--EEEEeecCcccCCCCCHHHHHhc----CCeE
Confidence            44599999999999999999999988876531        2334454  5555556533 457899999865    7899


Q ss_pred             EEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC--CcccEEEeCCCccc--CCCCCceEE
Q 013217          173 IIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF--KYCDVVTTTTHKSL--RGPRGGMIF  243 (447)
Q Consensus       173 ii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~--~~~Di~~~s~~K~l--~Gp~gG~i~  243 (447)
                      |+++.++||+  ..+   +++|.++|+++|+++++|++|. ++...+......  ...++++.|+||++  +|.|.|+++
T Consensus       165 v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~  243 (391)
T 3h14_A          165 LMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYH-GIEYEAKAVTALELTDECYVINSFSKYFSMTGWRVGWMV  243 (391)
T ss_dssp             EEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT-TCBSSSCCCCGGGTCSSSEEEEESSSTTCCTTSCCEEEE
T ss_pred             EEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcch-hcccCCCCcChhhcCCCEEEEEechhccCCccceeEEEE
Confidence            9988778775  555   7899999999999999999974 333332211111  13568899999997  566779999


Q ss_pred             eecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCe
Q 013217          244 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNH  323 (447)
Q Consensus       244 ~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~  323 (447)
                      +++      ++.+.+....... .++++....++..++++  ....+++..+++.++++.+.+.|++.|+.....+..+.
T Consensus       244 ~~~------~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  314 (391)
T 3h14_A          244 VPE------DQVRVVERIAQNM-FICAPHASQVAALAALD--CDAELQANLDVYKANRKLMLERLPKAGFTRIAPPDGAF  314 (391)
T ss_dssp             CCG------GGHHHHHHHHHHT-TCCCCHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCCBTT
T ss_pred             eCH------HHHHHHHHHHhhh-ccCCCHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCeeE
Confidence            987      5666665433222 23445544444444554  22345777888899999999999887765543334456


Q ss_pred             eEEecCCCCCCCHHHHHHHHh-hcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          324 LVLVDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       324 ~~~v~~~~~~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      +.|+++...+.+..++.+.|. ++||.+..+..++.  +..++.+|+++..  +    ++++++.++.|+++++..
T Consensus       315 ~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~~~~iRis~~~--~----~~~i~~~l~~l~~~~~~~  382 (391)
T 3h14_A          315 YVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDP--ERGAGTLRFSYAR--A----TADIEEGLDRLEAFMQAR  382 (391)
T ss_dssp             EEEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCT--TTGGGEEEEECCS--C----HHHHHHHHHHHHHHHHHC
T ss_pred             EEEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCC--CCCCCeEEEEecC--C----HHHHHHHHHHHHHHHHHh
Confidence            677787654567778877754 46999976432221  1224689999764  3    799999999999988754

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=99.95  E-value=3.6e-27  Score=234.89  Aligned_cols=337  Identities=13%  Similarity=0.113  Sum_probs=234.2

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CCCccceeeecCCc
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSG   95 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~~~~~v~~~sG   95 (447)
                      +..|+|..+++.  .+|.|.+++...+.+. ..+|+..        ..++++.+++++++.+|.  +++.    |.+++|
T Consensus        61 ~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~--------~~~l~~~l~~~l~~~~g~~~~~~~----v~~~~g  127 (421)
T 3l8a_A           61 PELLQMWVADMDFLPVPEIKEAIINYGREH-IFGYNYF--------NDDLYQAVIDWERKEHDYAVVKED----ILFIDG  127 (421)
T ss_dssp             TTCEECCSSCCCSCCCHHHHHHHHHHHHHC-CSSCBCC--------CHHHHHHHHHHHHHHHCCCCCGGG----EEEESC
T ss_pred             CCeeecccCCCCCCCCHHHHHHHHHHHhcC-CcCCCCC--------CHHHHHHHHHHHHHHhCCCCCHHH----EEEcCC
Confidence            456888766653  4799999998877642 2233321        135555667889999884  4442    333555


Q ss_pred             H-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC--CCCCCCCHHHHHHHhhhhCCcE
Q 013217           96 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD--ESTGLVDYDMLEKTAILFRPKL  172 (447)
Q Consensus        96 s-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~id~~~l~~~~~~~~~kl  172 (447)
                      + +|+.+++.+++++||+|++..+.|.++..        .+...|.  +++.++++  ..++.+|+++|++++++.++++
T Consensus       128 ~~ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~  197 (421)
T 3l8a_A          128 VVPAISIALQAFSEKGDAVLINSPVYYPFAR--------TIRLNDH--RLVENSLQIINGRFEIDFEQLEKDIIDNNVKI  197 (421)
T ss_dssp             HHHHHHHHHHHHSCTEEEEEEEESCCHHHHH--------HHHHTTE--EEEEEECEEETTEEECCHHHHHHHHHHTTEEE
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCCCcHHHHH--------HHHHCCC--EEEeccccccCCCeeeCHHHHHHHhhccCCeE
Confidence            5 89999999999999999999988876431        2334454  34444443  2345799999999998448999


Q ss_pred             EEEcCCCCCC--C---CChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-------cccEEEeCCCccc--CCCC
Q 013217          173 IIAGASAYPR--D---FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-------YCDVVTTTTHKSL--RGPR  238 (447)
Q Consensus       173 ii~~~~~~~~--~---~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-------~~Di~~~s~~K~l--~Gp~  238 (447)
                      |+++.++||+  .   .++++|+++|+++|+++|+|++| .++...+....++.       ..++++.|++|++  +|.+
T Consensus       198 vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~-~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~  276 (421)
T 3l8a_A          198 YLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIH-QDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTK  276 (421)
T ss_dssp             EEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTT-TTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGC
T ss_pred             EEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccc-cccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhh
Confidence            9998777775  3   36899999999999999999998 44444332222211       2348889999997  4667


Q ss_pred             CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEeee
Q 013217          239 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVS  317 (447)
Q Consensus       239 gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~  317 (447)
                      .|+++++++     ++.+.+.........++++...+++..++++.. ....++..+++.++++++.+.|++ .++.+..
T Consensus       277 ~G~~~~~~~-----~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~  350 (421)
T 3l8a_A          277 NSFAIIQNE-----SLRRKFQYRQLANNQHEVPTVGMIATQAAFQYG-KPWLEELKTVIEGNIKLVIKELEAKTKIKVME  350 (421)
T ss_dssp             CEEEECCSH-----HHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCSCEEEC
T ss_pred             eEeEEcCCH-----HHHHHHHHHHHhcccCCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHhCCCceEeC
Confidence            799999842     677766554322234466777777777777753 233577788889999999999988 5888775


Q ss_pred             CCCCCeeEEecCCCCCCCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          318 GGSDNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       318 ~~~~~~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      + ...++.|+++...+.+..++.+.| +++||.++.+...+.   ...+.+|++++  ++    ++++++.++.|+++++
T Consensus       351 ~-~~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~---~~~~~iRi~~~--~~----~~~i~~~l~~l~~~l~  420 (421)
T 3l8a_A          351 P-EGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGK---EGKYFARLNVA--TP----KNTVQEALSRIISVFG  420 (421)
T ss_dssp             C-SBSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGCG---GGTTEEEEECC--SC----HHHHHHHHHHHHHHC-
T ss_pred             C-CeeEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhCC---CCCCEEEEEec--CC----HHHHHHHHHHHHHHHh
Confidence            4 346667788865455677788877 467999975432221   12468999976  34    8999999999988764

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.95  E-value=1.8e-26  Score=225.37  Aligned_cols=320  Identities=15%  Similarity=0.095  Sum_probs=225.9

Q ss_pred             cCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC-CCCccceeeecCCcH-
Q 013217           21 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL-DENKWGVNVQPLSGS-   96 (447)
Q Consensus        21 ~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~-~~~~~~~~v~~~sGs-   96 (447)
                      +.|+|..++|.  .|+.|++++...+.+....+|+..       ...+++    +++++++|+ +++    .|.+++|+ 
T Consensus        31 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~-------~~~~l~----~~la~~~g~~~~~----~i~~~~g~t   95 (367)
T 3euc_A           31 GLVKLDAMENPYRLPPALRSELAARLGEVALNRYPVP-------SSEALR----AKLKEVMQVPAGM----EVLLGNGSD   95 (367)
T ss_dssp             TCEECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCCC-------CHHHHH----HHHHHHHTCCTTC----EEEEEEHHH
T ss_pred             CeeEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCCC-------cHHHHH----HHHHHHhCCCCcc----eEEEcCCHH
Confidence            45889888886  578999999887764212344331       123443    678888998 444    33345655 


Q ss_pred             HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 013217           97 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG  176 (447)
Q Consensus        97 ~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~  176 (447)
                      +|+..++.++++|||+|++..+.|.++..        .+...|.  +++.+++++ ++.+|++++++++++++|++|+++
T Consensus        96 ~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~-~~~~d~~~l~~~l~~~~~~~v~~~  164 (367)
T 3euc_A           96 EIISMLALAAARPGAKVMAPVPGFVMYAM--------SAQFAGL--EFVGVPLRA-DFTLDRGAMLAAMAEHQPAIVYLA  164 (367)
T ss_dssp             HHHHHHHHHTCCTTCEEEEEESCSCCSCH--------HHHTTTC--EEEEEECCT-TSCCCHHHHHHHHHHHCCSEEEEE
T ss_pred             HHHHHHHHHHcCCCCEEEEcCCCHHHHHH--------HHHHcCC--eEEEecCCC-CCCCCHHHHHHHhhccCCCEEEEc
Confidence            89999999999999999999988876531        2334454  555666663 678999999999987789999998


Q ss_pred             CCCCCC--CC---ChHHHHHHHHHh--CCEEEEehhhhccccccccCCCCCC--cccEEEeCCCccc-CCCCCceEEeec
Q 013217          177 ASAYPR--DF---DYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL-RGPRGGMIFFKK  246 (447)
Q Consensus       177 ~~~~~~--~~---~~~~i~~ia~~~--g~~livD~a~~~g~~~~~~~~~~~~--~~Di~~~s~~K~l-~Gp~gG~i~~~~  246 (447)
                      .++||+  ..   ++++|.++|++|  |+++++|++|.. +...+..+ .+.  ..++++.|+||+. +|.|.|++++++
T Consensus       165 ~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~-~~~~~~~~-~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~  242 (367)
T 3euc_A          165 YPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQP-FAQESWMS-RLTDFGNLLVMRTVSKLGLAGIRLGYVAGDP  242 (367)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCC-SSSCCSGG-GGGTCTTEEEEEECCCTTSCSCCEEEEEECH
T ss_pred             CCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchh-hcccchHH-HHhhCCCEEEEecchhhcccccCceeeeeCH
Confidence            777775  43   467888889999  999999999743 32222111 111  2458899999983 456669999977


Q ss_pred             CCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCCCCeeE
Q 013217          247 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLV  325 (447)
Q Consensus       247 ~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~  325 (447)
                            ++.+.+.....+   .+++....+++..+++.  ...+++..+++.++++.+.+.|.+. |+++..+  ...++
T Consensus       243 ------~~~~~~~~~~~~---~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~--~~~~~  309 (367)
T 3euc_A          243 ------QWLEQLDKVRPP---YNVNVLTEATALFALEH--VAVLDEQAAQLRAERSRVAEGMAAHGGVTVFPS--AANFL  309 (367)
T ss_dssp             ------HHHHHHGGGCCS---SCCCHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHTSTTCEECCC--SSSEE
T ss_pred             ------HHHHHHHHhCCC---CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCC--CCeEE
Confidence                  777777665433   23566666666656654  2345778888999999999999885 8885543  34456


Q ss_pred             EecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          326 LVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       326 ~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      ++++.    +..++.+.|.++||.++.+..++   +...+.+|+++.   +    ++|+++++++|++++
T Consensus       310 ~~~~~----~~~~l~~~l~~~gi~v~~~~~~~---~~~~~~iRis~~---~----~~~i~~~~~~l~~~l  365 (367)
T 3euc_A          310 LARVP----DAAQTFDRLLARKVLIKNVSKMH---PLLANCLRVTVS---T----PEENAQFLEAFAASL  365 (367)
T ss_dssp             EEECS----CHHHHHHHHHTTTEECEECGGGC---GGGTTEEEEECC---C----HHHHHHHHHHHHHHT
T ss_pred             EEECC----CHHHHHHHHHHCCeEEEECCccC---CCCCCEEEEecC---C----HHHHHHHHHHHHHHh
Confidence            77764    57888889999999997542211   123568999964   4    899999999998765

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.95  E-value=4.5e-26  Score=229.09  Aligned_cols=363  Identities=10%  Similarity=0.020  Sum_probs=237.2

Q ss_pred             HHHHHHHHHHHHHhhc-CeeEecC-CCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCC
Q 013217            6 PEVCEIITKEKERQFK-SLELIAS-ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE   83 (447)
Q Consensus         6 ~~~~~~~~~e~~~~~~-~i~l~~~-~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~   83 (447)
                      .++.+.+.+....... ..++-.. ..+.++.+.+++...+.... .++      ...+...++|+.+++++++++|++.
T Consensus        26 ~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~e~~~~a~~~~~-~~~------~~~~~~~~l~~~~~~~la~l~g~~~   98 (452)
T 2dgk_A           26 DVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNW-IDK------EEYPQSAAIDLRCVNMVADLWHAPA   98 (452)
T ss_dssp             HHHHHHHHHHGGGSCCCTTBCSCCSCCCCCHHHHHHHHHTTTCBT-TCT------TTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHhcCCCCCccCCCCeeCCCchHHHHHHHHHHhccCC-CCh------hhChhHHHHHHHHHHHHHHHhCCCc
Confidence            4566666654422211 1221111 13567889999887664321 111      1223456788888999999999986


Q ss_pred             Cc--cceeeecCCcHHHHHHHHHHhcC--------CC-----CEEEEecCCCCcccCCCccccccccccccceeEEEecc
Q 013217           84 NK--WGVNVQPLSGSPANFEVYTAILK--------PH-----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR  148 (447)
Q Consensus        84 ~~--~~~~v~~~sGs~a~~~~~~al~~--------pg-----d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  148 (447)
                      +.  ....+.+++|++|+..++.++..        +|     ++|++++ .|.++.        +.+...|.  +++.++
T Consensus        99 ~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~--------~~~~~~G~--~v~~v~  167 (452)
T 2dgk_A           99 PKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWH--------KFARYWDV--ELREIP  167 (452)
T ss_dssp             CTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHH--------HHHHHTTC--EEEECC
T ss_pred             ccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHH--------HHHHHcCc--eEEEEe
Confidence            53  10123345566999988887753        55     5888877 554331        23344554  566666


Q ss_pred             cCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHh------CCEEEEehhhhccccc--cccCCC
Q 013217          149 LDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAV------GALLMMDMAHISGLVA--ASVVAD  218 (447)
Q Consensus       149 ~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~------g~~livD~a~~~g~~~--~~~~~~  218 (447)
                      ++++++.+|+++|++++++ +|++|+++.++|++  ..|+++|.++|+++      |+++++|++|..+..+  .+..+.
T Consensus       168 ~~~~~~~~d~~~l~~~i~~-~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~  246 (452)
T 2dgk_A          168 MRPGQLFMDPKRMIEACDE-NTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVW  246 (452)
T ss_dssp             CBTTBCSCCHHHHHHHCCT-TEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCC
T ss_pred             cCCCCCeECHHHHHHHHhh-CCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchh
Confidence            7644689999999999987 88998888766554  78999999999996      9999999998665431  111111


Q ss_pred             C--CCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHH-HHhhh-ccCC-------CCCCCCcHHHHHHHHHHHHHhc
Q 013217          219 P--FKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELE-SAINN-AVFP-------GLQGGPHNHTIGGLAVCLKHAQ  286 (447)
Q Consensus       219 ~--~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~-~~i~~-~~~~-------~~~g~p~~~~~aal~~al~~~~  286 (447)
                      .  ..++|++++|+|||+.+|.+ |+++++++     ++. +.+.. ..+.       +..++......++++++++.+.
T Consensus       247 ~~~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg  321 (452)
T 2dgk_A          247 DFRLPRVKSISASGHKFGLAPLGCGWVIWRDE-----EALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLG  321 (452)
T ss_dssp             STTSTTEEEEEEETTTTTCCCSSCEEEEESSG-----GGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHH
T ss_pred             hcCCCCCcEEEECcccccCCCCCeEEEEEcCH-----HHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHh
Confidence            1  23699999999999866555 99999763     222 22211 0011       1233444445556666777655


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCC---CCCeeEEecCCCC---CCCHHHHHHHHhhcCeEEccCCCCCCC
Q 013217          287 SPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGG---SDNHLVLVDLRPM---GIDGARVEKILDMASITLNKNSVPGDK  359 (447)
Q Consensus       287 ~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~---~~~~~~~v~~~~~---~~~~~~~~~~L~~~gI~v~~~~~p~~~  359 (447)
                      ..++++..++..++++++.+.|.+. |++++.++   ...+++.+.+.+.   .++..++.+.|.+.||.++....|...
T Consensus       322 ~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~  401 (452)
T 2dgk_A          322 REGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEA  401 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEEECSTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEEEecCcccccCCHHHHHHHHHhcCCeeeeeeCCccc
Confidence            5678888999999999999999985 58887542   2334444444332   245578999999999976543233221


Q ss_pred             CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          360 SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       360 ~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                        .....+|+++...+|    ++|++++++.|++++...
T Consensus       402 --~~~~~lRis~~~~~t----~e~id~li~~l~~~~~~~  434 (452)
T 2dgk_A          402 --TDIVVMRIMCRRGFE----MDFAELLLEDYKASLKYL  434 (452)
T ss_dssp             --TTCEEEEEECCTTCC----HHHHHHHHHHHHHHHHHH
T ss_pred             --CCeEEEEEEecCCCC----HHHHHHHHHHHHHHHHHH
Confidence              123479999887777    999999999999987754

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.95  E-value=3.2e-28  Score=245.65  Aligned_cols=294  Identities=14%  Similarity=0.135  Sum_probs=211.2

Q ss_pred             HHHHHHHHHcCCCCCccceeeecCCcH-HHHHHHHHHhcCCCCE---EEEecCCCCcccCCCccccccccccccceeE--
Q 013217           70 LCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDR---IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE--  143 (447)
Q Consensus        70 ~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a~~~~~~al~~pgd~---Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--  143 (447)
                      .+++++++++|++++++    .+++|+ +++..++.++++|||+   |++..+.|++......    ..+...|....  
T Consensus       115 ~l~~~la~~~g~~~~~v----~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~----~~~~~~G~~~~~~  186 (465)
T 3e9k_A          115 SIVGLMKDIVGANEKEI----ALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIE----SQLQLHGLNIEES  186 (465)
T ss_dssp             HHHGGGHHHHTCCGGGE----EECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHH----HHHHHTTCCHHHH
T ss_pred             HHHHHHHHHcCCCcCCE----EEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHH----HHHHHcCCcceee
Confidence            34578999999987543    235555 8888899999877665   9999999876432110    01122333211  


Q ss_pred             -EEecccCCCCCCCCHHHHHHHhhhh--CCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCC
Q 013217          144 -SMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD  218 (447)
Q Consensus       144 -~~~~~~~~~~~~id~~~l~~~~~~~--~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~  218 (447)
                       +...+.+ +++.+|+++++++++++  ++++|++++++|++  ..|+++|.++|+++|+++++|++|+.|.++.++...
T Consensus       187 ~v~~~~~~-~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~  265 (465)
T 3e9k_A          187 MRMIKPRE-GEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDW  265 (465)
T ss_dssp             EEEECCCT-TCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH
T ss_pred             eEEEecCC-CCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhc
Confidence             1111232 46789999999999742  78999998777764  789999999999999999999999888664432221


Q ss_pred             CCCcccEEEeCCCcccC-CCCC-ceEEeecCCcchhhHHHHhhhccC--------------------C----CCCCCCcH
Q 013217          219 PFKYCDVVTTTTHKSLR-GPRG-GMIFFKKDPVLGVELESAINNAVF--------------------P----GLQGGPHN  272 (447)
Q Consensus       219 ~~~~~Di~~~s~~K~l~-Gp~g-G~i~~~~~~~~~~~~~~~i~~~~~--------------------~----~~~g~p~~  272 (447)
                         ++|++++|+||+++ ||.| |+++++++      +.+.+.....                    +    ...|+|+.
T Consensus       266 ---~~D~~~~s~~K~l~~gp~~~g~l~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~  336 (465)
T 3e9k_A          266 ---GVDFACWCSYKYLNAGAGGIAGAFIHEK------HAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPI  336 (465)
T ss_dssp             ---TCCEEEECSSSTTCCCTTCCCEEEECGG------GTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCH
T ss_pred             ---CCCEEEECcccccccCCCceEEEEEcHH------HHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccH
Confidence               48999999999994 8887 99999873      3332221100                    0    01358888


Q ss_pred             HHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-----------CCcEeeeCCC---CCeeEEecCCCCCCCHHH
Q 013217          273 HTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-----------LGYKLVSGGS---DNHLVLVDLRPMGIDGAR  338 (447)
Q Consensus       273 ~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-----------~g~~~~~~~~---~~~~~~v~~~~~~~~~~~  338 (447)
                      ..++++.++++.+...++++..++..++++++.+.|++           .|++++.+..   ...++++.+.   .+..+
T Consensus       337 ~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~---~~~~~  413 (465)
T 3e9k_A          337 LLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFS---VPNKD  413 (465)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEEC---CTTCC
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEec---CCHHH
Confidence            99999999998876656788889999999999999988           6888876421   1334555554   24567


Q ss_pred             HHHHHhhcCeEEccCCCCCCCCCCCCCeEEEec-CccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          339 VEKILDMASITLNKNSVPGDKSALVPGGIRIGS-PAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       339 ~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~-~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      +.+.|.++||.++..         .++.||+++ +.+++    ++|++++++.|+++++.
T Consensus       414 l~~~L~~~Gi~v~~~---------~~~~iRis~~~~~~t----~edi~~~~~~l~~~l~~  460 (465)
T 3e9k_A          414 VFQELEKRGVVCDKR---------NPNGIRVAPVPLYNS----FHDVYKFTNLLTSILDS  460 (465)
T ss_dssp             HHHHHHTTTEECEEE---------TTTEEEEBCCTTTCC----HHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHCCEEEecC---------CCCEEEEeCcccCCC----HHHHHHHHHHHHHHHHh
Confidence            888898899998631         246899997 78887    99999999999998764

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.95  E-value=7.8e-28  Score=237.30  Aligned_cols=332  Identities=17%  Similarity=0.128  Sum_probs=221.6

Q ss_pred             cCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHH
Q 013217           21 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  100 (447)
Q Consensus        21 ~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~  100 (447)
                      +.++|-.+.+.+++.+++++...+...+   |+     +..+...+++    +.+++++|.+.     .+.++||++|+.
T Consensus        23 ~~~~l~~~~p~~~~~~~~a~~~~~~~~~---~~-----~~~~~~~~l~----~~la~~~~~~~-----~i~~~~gt~al~   85 (391)
T 3dr4_A           23 DLPRISVAAPRLDGNERDYVLECMDTTW---IS-----SVGRFIVEFE----KAFADYCGVKH-----AIACNNGTTALH   85 (391)
T ss_dssp             -----CCCCCCCCSSHHHHHHHHHHHTC---CS-----SCSHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHH
T ss_pred             CCceeccCCCCCCHHHHHHHHHHHHcCC---cc-----CCChHHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHH
Confidence            4456666777788999999988776532   11     1223344554    67888999873     355689999999


Q ss_pred             HHHHHh-cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCC
Q 013217          101 EVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA  179 (447)
Q Consensus       101 ~~~~al-~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~  179 (447)
                      .++.++ +++||+|++.++.|.++..        .+...|.  +++.++++++++.+|++++++++++ ++++|+++. .
T Consensus        86 ~~l~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~n-~  153 (391)
T 3dr4_A           86 LALVAMGIGPGDEVIVPSLTYIASAN--------SVTYCGA--TPVLVDNDPRTFNLDAAKLEALITP-RTKAIMPVH-L  153 (391)
T ss_dssp             HHHHHHTCCTTCEEEEESSSCTHHHH--------HHHHTTC--EEEEECBCTTTCSBCGGGSGGGCCT-TEEEECCBC-G
T ss_pred             HHHHHcCCCCcCEEEECCCchHHHHH--------HHHHCCC--EEEEEecCccccCcCHHHHHHhcCC-CceEEEEEC-C
Confidence            999999 9999999999998877632        2334454  5666667766789999999999876 888887542 2


Q ss_pred             CCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeC--CCcccCCCCCceEEeecCCcchhhHHHH
Q 013217          180 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTT--THKSLRGPRGGMIFFKKDPVLGVELESA  257 (447)
Q Consensus       180 ~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s--~~K~l~Gp~gG~i~~~~~~~~~~~~~~~  257 (447)
                      ++...|+++|.++|+++|+++++|++|+.|....+.....+  .|++++|  .||+++|++||+++++++     ++.+.
T Consensus       154 tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~--~di~~~S~s~~K~l~~g~gg~~~~~~~-----~~~~~  226 (391)
T 3dr4_A          154 YGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSL--GDCATFSFFGNAIITTGEGGMITTNDD-----DLAAK  226 (391)
T ss_dssp             GGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS--SSEEEEECBTTSSSCCBSCEEEEESCH-----HHHHH
T ss_pred             CCChhhHHHHHHHHHHcCCEEEEECcccccceECCeeeccc--CCEEEEECCCCCcCCcCCeEEEEECCH-----HHHHH
Confidence            22378999999999999999999999988876554322222  3555555  779998888899888763     56555


Q ss_pred             hhhccCCCC----------CCC-CcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeC--CC----
Q 013217          258 INNAVFPGL----------QGG-PHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSG--GS----  320 (447)
Q Consensus       258 i~~~~~~~~----------~g~-p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~~----  320 (447)
                      +......+.          .|. ...   .++.+++......++++..++..++++++.+.|.+.|+.+...  ..    
T Consensus       227 ~~~~~~~g~~~~~~~~~~~~g~~~~~---~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~  303 (391)
T 3dr4_A          227 MRLLRGQGMDPNRRYWFPIVGFNYRM---TNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARLGNRVTKPHVALTGRH  303 (391)
T ss_dssp             HHHHHBTTCCTTSTTCCSSCCCBCBC---CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGGTTSEECCCCCTTSCC
T ss_pred             HHHHHhcCCCCCCcccccccccccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCcCCCCCCcc
Confidence            543221111          010 111   1222222222224567778888999999999998878776543  11    


Q ss_pred             CCeeEEecCCC-CCCCHHHHHHHHhhcCeEEccCCCCCCCCC-C--------------CCCeEEEecCccccCCCCHHHH
Q 013217          321 DNHLVLVDLRP-MGIDGARVEKILDMASITLNKNSVPGDKSA-L--------------VPGGIRIGSPAMTTRGFSEKEF  384 (447)
Q Consensus       321 ~~~~~~v~~~~-~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~-~--------------~~~~iRig~~~~~~~g~~~~di  384 (447)
                      ..+++++.+.. .+.+..++.+.|.++||.++.+..|.+..+ +              ....+|++++..+|    ++|+
T Consensus       304 ~~~~~~i~~~~~~~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t----~edi  379 (391)
T 3dr4_A          304 VFWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLT----EADI  379 (391)
T ss_dssp             CCSSEEEEECSSCSSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCC----HHHH
T ss_pred             eeEEEEEEECCccchhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCC----HHHH
Confidence            12233444432 256788899999999999886543322111 0              12469999887777    9999


Q ss_pred             HHHHHHHHHHH
Q 013217          385 VAIADFIHEGV  395 (447)
Q Consensus       385 ~~l~~~i~~~l  395 (447)
                      +++++.|++++
T Consensus       380 ~~~~~~l~~~l  390 (391)
T 3dr4_A          380 DRVIAALDQVL  390 (391)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHHHh
Confidence            99999987653

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.95  E-value=4.2e-28  Score=239.71  Aligned_cols=342  Identities=15%  Similarity=0.153  Sum_probs=217.0

Q ss_pred             CeeEe-cCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHH
Q 013217           22 SLELI-ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  100 (447)
Q Consensus        22 ~i~l~-~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~  100 (447)
                      .+-|. ++..++++.+++++...+.+.+  ++++..+..+. ......+..++++++++|++++.+   +.+++|++|+.
T Consensus        21 ~iyld~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~l~~~la~~~~~~~~~v---~~~~g~t~al~   94 (400)
T 3vax_A           21 MTYLDAAATTRVDQRVADIVLHWMTAEF--GNAGSRHEYGI-RAKRGVERAREYLASTVSAEPDEL---IFTSGATESNN   94 (400)
T ss_dssp             -CCCCCCCCSSSCHHHHHHHHHHHHHHH--SCSSCHHHHHH-HHHHHHHHHHHHHHHHTTCCGGGE---EEESCHHHHHH
T ss_pred             cEEecCCCCCCCCHHHHHHHHHHHHhcc--CCCcccchhHH-HHHHHHHHHHHHHHHHcCCCCCcE---EEeCCHHHHHH
Confidence            34443 3444679999999998887543  34443332222 223333456789999999986532   22344569999


Q ss_pred             HHHHHhc----CCCC-EEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEE
Q 013217          101 EVYTAIL----KPHD-RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIA  175 (447)
Q Consensus       101 ~~~~al~----~pgd-~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~  175 (447)
                      .++.+++    +||| +|++.+++|+++.....     .+...|.  +++.++++ .++.+|+++|++++++ +|++|++
T Consensus        95 ~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~-----~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~  165 (400)
T 3vax_A           95 IALLGLAPYGERTGRRHIITSAIEHKAVLEPLE-----HLAGRGF--EVDFLTPG-PSGRISVEGVMERLRP-DTLLVSL  165 (400)
T ss_dssp             HHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHH-----HHHTTTC--EEEEECCC-TTCCCCHHHHHTTCCT-TEEEEEC
T ss_pred             HHHHHHHHhhccCCCCEEEECccccHhHHHHHH-----HHHhcCC--eEEEEccC-CCCCcCHHHHHHhcCC-CceEEEE
Confidence            9999987    8999 99999988876532111     1112343  55666666 4678999999999987 8999999


Q ss_pred             cCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEE-eecCCcch
Q 013217          176 GASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIF-FKKDPVLG  251 (447)
Q Consensus       176 ~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~-~~~~~~~~  251 (447)
                      +.++||+  ..|+++|.++|+++|+++++|++|+.|....+...  .  +|++++|+|| +.||.| |+++ ++++    
T Consensus       166 ~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~--~--~d~~~~s~~K-~~g~~g~g~~~~~~~~----  236 (400)
T 3vax_A          166 MHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGDLTT--P--IDMISISGHK-IGAPKGVGALVTRRRE----  236 (400)
T ss_dssp             CSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGGGGGS--C--CSEEEEETGG-GTSCSSCEEEEECBCS----
T ss_pred             ECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcChhh--c--CcEEEEeHHH-hCCCCceEEEEEecch----
Confidence            8777775  78999999999999999999999987654333211  1  7999999999 567776 8888 8762    


Q ss_pred             hhHH---HHhhhccC------CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCC-
Q 013217          252 VELE---SAINNAVF------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSD-  321 (447)
Q Consensus       252 ~~~~---~~i~~~~~------~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-  321 (447)
                       ++.   ..+.....      ....++++...++++..+++.+. .++++..+++.++++++.+.|...|+++..+... 
T Consensus       237 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  314 (400)
T 3vax_A          237 -EMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFE-AEHAQWQVAAQDLRSRLLAGLASTSFQVNGDQDHV  314 (400)
T ss_dssp             -SSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHH-HSHHHHHHHHHHHHHHHHHHHTTTTCEECSCTTSB
T ss_pred             -hccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhhCCCCEEEeCCcccC
Confidence             111   11221111      11245677777887777887654 3567888999999999999998668887654221 


Q ss_pred             -CeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCC----------CCCCC----CCeEEEec-CccccCCCCHHHHH
Q 013217          322 -NHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD----------KSALV----PGGIRIGS-PAMTTRGFSEKEFV  385 (447)
Q Consensus       322 -~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~----------~~~~~----~~~iRig~-~~~~~~g~~~~di~  385 (447)
                       .+++++.+.  +.+..++.+.|. +||.++.+.....          ..+..    .+.+|+++ +..++    ++|++
T Consensus       315 ~~~~~~~~~~--~~~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t----~e~i~  387 (400)
T 3vax_A          315 VPHILNLSFE--DVDAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQAT----DLDVE  387 (400)
T ss_dssp             CTTEEEEECT--TCCHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC------------
T ss_pred             CCCEEEEEeC--CCCHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCC----HHHHH
Confidence             234444443  457888999999 9998865321100          00011    36899998 77776    89999


Q ss_pred             HHHHHHHHHHH
Q 013217          386 AIADFIHEGVE  396 (447)
Q Consensus       386 ~l~~~i~~~l~  396 (447)
                      ++++.|+++++
T Consensus       388 ~~~~~l~~~~~  398 (400)
T 3vax_A          388 ELARGVAKLKP  398 (400)
T ss_dssp             -----------
T ss_pred             HHHHHHHHHhc
Confidence            99999988765

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=99.95  E-value=2.4e-26  Score=226.30  Aligned_cols=339  Identities=13%  Similarity=0.077  Sum_probs=230.9

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CCCc-cceeeecCC
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENK-WGVNVQPLS   94 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~-~~~~v~~~s   94 (447)
                      +..++|..+++.  .++.+.+++...+.+. ..+|+..      ....++++...+++.+.+|.  +++. +   +.+++
T Consensus        26 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~------~g~~~l~~~la~~~~~~~g~~~~~~~~v---~~~~g   95 (389)
T 1gd9_A           26 KDVISLGIGEPDFDTPQHIKEYAKEALDKG-LTHYGPN------IGLLELREAIAEKLKKQNGIEADPKTEI---MVLLG   95 (389)
T ss_dssp             SSCEECCCCSCSSCCCHHHHHHHHHHHHTT-CCSCCCT------TCCHHHHHHHHHHHHHHHCCCCCTTTSE---EEESS
T ss_pred             cCeEecCCCCCCCCCCHHHHHHHHHHHhCC-CCCCCCC------CCcHHHHHHHHHHHHHHhCCCCCCCCeE---EEcCC
Confidence            467888777764  5789999998877542 1233321      12345665556677777784  4443 2   22345


Q ss_pred             cHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhhCCcEE
Q 013217           95 GSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLI  173 (447)
Q Consensus        95 Gs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~~~kli  173 (447)
                      |++|+..++.++++|||+|++.++.|.++..        .+...|.  +++.+++++ +++.+|+++|++++++ ++++|
T Consensus        96 ~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v  164 (389)
T 1gd9_A           96 ANQAFLMGLSAFLKDGEEVLIPTPAFVSYAP--------AVILAGG--KPVEVPTYEEDEFRLNVDELKKYVTD-KTRAL  164 (389)
T ss_dssp             TTHHHHHHHTTTCCTTCEEEEEESCCTTHHH--------HHHHHTC--EEEEEECCGGGTTCCCHHHHHHHCCT-TEEEE
T ss_pred             hHHHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHCCC--EEEEeccCCccCCCCCHHHHHHhcCc-CceEE
Confidence            5699999999999999999999998877531        2334454  455555553 2467899999999987 88998


Q ss_pred             EEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhcccccccc-CCC--CC---CcccEEEeCCCcccC--CCCCc
Q 013217          174 IAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASV-VAD--PF---KYCDVVTTTTHKSLR--GPRGG  240 (447)
Q Consensus       174 i~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~~--~~---~~~Di~~~s~~K~l~--Gp~gG  240 (447)
                      +++.++||+  ..   ++++|.++|+++|+++++|++|+.+.. .+. ...  .+   ...|++++|+||+++  |.|.|
T Consensus       165 ~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G  243 (389)
T 1gd9_A          165 IINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIY-DDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLG  243 (389)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBC-TTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCE
T ss_pred             EEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhccc-CCCCCCCHhhccCCCCCEEEEecChhhcCCcccceE
Confidence            888777765  44   489999999999999999999865433 221 111  11   246899999999973  56679


Q ss_pred             eEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcCh-hHHHHHHHHHHHHHHHHHHHHHCCcEeeeCC
Q 013217          241 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVELGYKLVSGG  319 (447)
Q Consensus       241 ~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~  319 (447)
                      ++++++      ++.+.+........ .+++....+++..+++..... .+++..+++.++++.+.+.|++.|+++..+ 
T Consensus       244 ~~~~~~------~~~~~l~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-  315 (389)
T 1gd9_A          244 FVAAPS------WIIERMVKFQMYNA-TCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKP-  315 (389)
T ss_dssp             EEECCH------HHHHHHHHHHTTTT-CSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC-
T ss_pred             EEEECH------HHHHHHHHHHhhhc-cCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCeecCC-
Confidence            999987      77777765433322 334444444445555532211 356777888899999999998888877643 


Q ss_pred             CCCeeEEecCCCCCCCHHHHHHHHh-hcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          320 SDNHLVLVDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       320 ~~~~~~~v~~~~~~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      ..+.++|+++...+.+..++.+.|. ++||.+..+..++.   ..++.+|++++.  +    +++++++++.|.++++.
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~~~iRi~~~~--~----~~~i~~~l~~l~~~~~~  385 (389)
T 1gd9_A          316 KGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGK---AGEGYVRISYAT--A----YEKLEEAMDRMERVLKE  385 (389)
T ss_dssp             CBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCG---GGTTBEEEECCS--C----HHHHHHHHHHHHHHHHH
T ss_pred             CeeeEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCC---CCCCeEEEEecC--C----HHHHHHHHHHHHHHHHh
Confidence            3345566676532456778888886 89999975432221   124589999763  4    89999999999888764

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.95  E-value=9.6e-27  Score=230.91  Aligned_cols=321  Identities=15%  Similarity=0.173  Sum_probs=223.8

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCccc-CchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCC
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYY-GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH  110 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~-~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pg  110 (447)
                      .+|.+.+++.+.+.. |..++.+.+.. +..+...+++    +++++++|.+.     .+.+++|++|+..++.++++||
T Consensus        74 ~~p~v~~a~~~~l~~-~~~~~~~~~~~~g~~~~~~~l~----~~la~~~g~~~-----~i~~~sGt~a~~~~l~~~~~~g  143 (409)
T 3kki_A           74 NHPLIKARLAKSLLE-EQQSLFMSASFLQNDYDKPMIE----KRLAKFTGFDE-----CLLSQSGWNANVGLLQTICQPN  143 (409)
T ss_dssp             TCHHHHHHHHHHHHS-CCCCCCSBGGGGCSTTTSCHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHHCCTT
T ss_pred             CCHHHHHHHHHHHHH-cCCCCCccccccCCcHHHHHHH----HHHHHHhCCCe-----EEEecchHHHHHHHHHHhcCCC
Confidence            379999999887753 44444333322 2223333444    67888999875     3446999999999999999999


Q ss_pred             CEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHH
Q 013217          111 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPR  188 (447)
Q Consensus       111 d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~  188 (447)
                      |.|++.++.|+++..        .+...|.  ++++++      .+|+++|++++++.++++|+++++++++  ..++++
T Consensus       144 d~Vl~~~~~~~~~~~--------~~~~~g~--~~~~~~------~~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~  207 (409)
T 3kki_A          144 TNVYIDFFAHMSLWE--------GARYANA--QAHPFM------HNNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAE  207 (409)
T ss_dssp             CEEEEETTSCHHHHH--------HHHHTTC--EEEEEC------TTCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHH
T ss_pred             CEEEECCCcCHHHHH--------HHHHcCC--eEEEec------CCCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHH
Confidence            999999988876532        2334454  444533      2689999999987679999999777764  788999


Q ss_pred             HHHHHHHhCCEEEEehhhhcccccc-cc--C-CCCC-CcccEEEeCCCcccCCCCCceEEeecCCcchhhHHHHhhhccC
Q 013217          189 MRQIADAVGALLMMDMAHISGLVAA-SV--V-ADPF-KYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVF  263 (447)
Q Consensus       189 i~~ia~~~g~~livD~a~~~g~~~~-~~--~-~~~~-~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~  263 (447)
                      |.++|++||+++++|++|+.|.... +.  . ...+ +..|+++.|+||+++++ ||++++++      ++.+.+.....
T Consensus       208 l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~-gg~v~~~~------~~~~~~~~~~~  280 (409)
T 3kki_A          208 LVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYR-AGAIWCNN------EVNRCVPFISY  280 (409)
T ss_dssp             HHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSS-CEEEEESS------SGGGTHHHHCH
T ss_pred             HHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCC-ceEEEECH------HHHHHHHHhCc
Confidence            9999999999999999987654321 10  0 0011 24689999999999766 89999987      44444433211


Q ss_pred             CC-CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCCCCHHHHHHH
Q 013217          264 PG-LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKI  342 (447)
Q Consensus       264 ~~-~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  342 (447)
                      +. ..++++...+++..++++....  .+++.+++.++++++.+.|.+.|+++..   ...++++.+... .+..++.+.
T Consensus       281 ~~~~~~~~~~~~~aa~~aal~~~~~--~~~~~~~~~~~~~~l~~~L~~~g~~~~~---~~~~~~~~~~~~-~~~~~~~~~  354 (409)
T 3kki_A          281 PAIFSSTLLPYEAAGLETTLEIIES--ADNRRQHLDRMARKLRIGLSQLGLTIRS---ESQIIGLETGDE-RNTEKVRDY  354 (409)
T ss_dssp             HHHHSBCCCHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHTTTCCCCC---SSSEEEEEEESH-HHHHHHHHH
T ss_pred             CccccCCCcHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHcCCccCC---CCCEEEEEeCCH-HHHHHHHHH
Confidence            11 1223455666666667776542  2567788889999999999998887663   345566665431 234568888


Q ss_pred             HhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          343 LDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       343 L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      |.++||.+.....|..  +...+.+|++++..++    ++|++++++.|+++++.
T Consensus       355 L~~~Gv~v~~~~~~~~--~~~~~~iRi~~~~~~t----~e~i~~~~~~l~~~l~~  403 (409)
T 3kki_A          355 LESNGVFGSVFCRPAT--SKNKNIIRLSLNSDVN----DEQIAKIIEVCSDAVNY  403 (409)
T ss_dssp             HHHTTEECEEECTTSS--CTTCEEEEEECCTTCC----HHHHHHHHHHHHHHHHH
T ss_pred             HHHCCceEeeeCCCCc--CCCCcEEEEEccCCCC----HHHHHHHHHHHHHHHhc
Confidence            8888999875433322  2234689999987777    99999999999998864

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.95  E-value=9.1e-28  Score=234.76  Aligned_cols=334  Identities=13%  Similarity=0.073  Sum_probs=224.1

Q ss_pred             cCeeEec--CCCCCCHHHHHHHhhhhhccCCCCCC-CCc-ccCchhHHHHHHHHHHHH-HHHHcCCCCCccceeeecCCc
Q 013217           21 KSLELIA--SENFTSRAVMEAVGSCLTNKYSEGLP-GKR-YYGGNEYIDELETLCQKR-ALAAFNLDENKWGVNVQPLSG   95 (447)
Q Consensus        21 ~~i~l~~--~~n~~~~~v~~a~~~~~~~~~~~g~~-~~~-~~~g~~~~~~le~~~~~~-~~~~~g~~~~~~~~~v~~~sG   95 (447)
                      ..+.|..  +.+.+++.+++++...+......++. ..+ .+...+...++    +++ +++++|.+  .    |.+++|
T Consensus         8 ~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~la~~~~~~--~----v~~~~g   77 (371)
T 2e7j_A            8 DFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDF----IHNQLPKFLGCD--V----ARVTNG   77 (371)
T ss_dssp             CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHH----HHTHHHHHTTSS--E----EEEESS
T ss_pred             CcEEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHH----HHHHHHHHcCCC--E----EEEeCC
Confidence            3455544  35678999999998877543211111 001 01122233344    468 89999987  2    223555


Q ss_pred             -HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecc--cCCCCCCCCHHHHHHHhhh----h
Q 013217           96 -SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR--LDESTGLVDYDMLEKTAIL----F  168 (447)
Q Consensus        96 -s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~id~~~l~~~~~~----~  168 (447)
                       ++|+..++.++++|||+|++.++.|.++..        .+...|.  +++.++  ++ +++.+|+++|++++++    .
T Consensus        78 ~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~-~~~~~d~~~l~~~l~~~~~~~  146 (371)
T 2e7j_A           78 AREAKFAVMHSLAKKDAWVVMDENCHYSSYV--------AAERAGL--NIALVPKTDY-PDYAITPENFAQTIEETKKRG  146 (371)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEETTCCHHHHH--------HHHHTTC--EEEEECCCCT-TTCCCCHHHHHHHHHHHTTTS
T ss_pred             hHHHHHHHHHHHhCCCCEEEEccCcchHHHH--------HHHHcCC--eEEEeecccC-CCCCcCHHHHHHHHHhhcccC
Confidence             699999999999999999999998876542        2334454  555555  55 3578999999999974    2


Q ss_pred             CCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEee
Q 013217          169 RPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFK  245 (447)
Q Consensus       169 ~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~  245 (447)
                      ++++|++++++||+  ..|+++|.++|+++|+++++|++|+.|.........   +.|++++|+||++++|.+ |+++++
T Consensus       147 ~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~di~~~s~sK~~~~~~~~G~~~~~  223 (371)
T 2e7j_A          147 EVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEI---GADFIVGSGHKSMAASGPIGVMGMK  223 (371)
T ss_dssp             CEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHH---TCSEEEEEHHHHSSCCSSCEEEEEC
T ss_pred             CeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCCCChhhc---CCCEEEecCCcCCCCCCCcEEEEEe
Confidence            78999888777664  779999999999999999999999776432111110   379999999999877655 999998


Q ss_pred             cCCcchhhHHHH-hhhccCCCC------CCCCcHHHHHHHHHHHHHhcChhHHHHHHHH--HHHHHHHHHHHHHCCcEee
Q 013217          246 KDPVLGVELESA-INNAVFPGL------QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKV--VSNCRALASRLVELGYKLV  316 (447)
Q Consensus       246 ~~~~~~~~~~~~-i~~~~~~~~------~g~p~~~~~aal~~al~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~g~~~~  316 (447)
                      +      ++.+. +......+.      .++++...++++..+++.+..    ++.+++  .++++++.+.|.+.|+++.
T Consensus       224 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~~~~~~  293 (371)
T 2e7j_A          224 E------EWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRE----RIKRWDEEVEKARRFAAEMEKLGIKQL  293 (371)
T ss_dssp             T------TTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHH----HGGGHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             c------hhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCcEEe
Confidence            8      45555 544322111      356677777777667765432    456677  7889999999988888877


Q ss_pred             eCCC-CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC-CCCCCCeEE-EecCcc-ccCCCCHHHHHHHHHHHH
Q 013217          317 SGGS-DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIR-IGSPAM-TTRGFSEKEFVAIADFIH  392 (447)
Q Consensus       317 ~~~~-~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~-~~~~~~~iR-ig~~~~-~~~g~~~~di~~l~~~i~  392 (447)
                      .+.. ..+++++++.    +..++.+.|.++||.+.. ..+... ....++.+| ++++.. ++    ++|++++++.|+
T Consensus       294 ~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~~~~----~~~i~~~~~~l~  364 (371)
T 2e7j_A          294 GDNPHNHDLMFFHAE----VLYEISKKAKGGRFFLYR-ELKSRKIHGIKPGLTRYFKLSTYGLS----DEEVDYVLNAFK  364 (371)
T ss_dssp             SSSSCCSSEEEEECH----HHHHHHHHSSSGGGHHHH-HHHHTTEECSCTTCCSEEEEECTTCC----HHHHHHHHHHHH
T ss_pred             cCCCccCceEEEECC----CHHHHHHHHHHCCEEEEe-ccccccccCCCCCceEEEEeeccCCC----HHHHHHHHHHHH
Confidence            5421 3456777764    567788888899998864 111000 011145799 998765 55    999999999999


Q ss_pred             HHHHH
Q 013217          393 EGVEI  397 (447)
Q Consensus       393 ~~l~~  397 (447)
                      ++++.
T Consensus       365 ~~~~~  369 (371)
T 2e7j_A          365 EIIEK  369 (371)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88763

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.95  E-value=4.1e-26  Score=220.13  Aligned_cols=323  Identities=18%  Similarity=0.206  Sum_probs=220.2

Q ss_pred             HHHHHHHHHHhhcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCcc
Q 013217            9 CEIITKEKERQFKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKW   86 (447)
Q Consensus         9 ~~~~~~e~~~~~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~   86 (447)
                      .+....+....+..|.|..++|+  ++|.|++++...+..  ..+||.       ....+++    +.+++++|++++. 
T Consensus         5 ~~~~~~~~~~~~~~i~l~~n~~~~~~~~~v~~a~~~~~~~--~~~y~~-------~~~~~lr----~~la~~~~~~~~~-   70 (337)
T 3p1t_A            5 GEAMDTEVRAAAQAVCLAFNENPEAVEPRVQAAIAAAAAR--INRYPF-------DAEPRVM----RKLAEHFSCPEDN-   70 (337)
T ss_dssp             ---------CCCCCEECSSCCCCSCCCHHHHHHHHHHGGG--TTSCCT-------THHHHHH----HHHHHHHTSCGGG-
T ss_pred             hhhccccccCCCCceEeeCCCCCCCCCHHHHHHHHHhhhh--hccCCC-------CchHHHH----HHHHHHhCcCHHH-
Confidence            34444555666778999999886  478999999887654  123332       2233444    6788889988753 


Q ss_pred             ceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHh
Q 013217           87 GVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTA  165 (447)
Q Consensus        87 ~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~  165 (447)
                         |.+++|+ +++..++.++  |||+|++.+|.|.++..        .+...|.  +++.++++ +++.+|+++++++ 
T Consensus        71 ---i~~t~G~~~~l~~~~~~~--~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~-  133 (337)
T 3p1t_A           71 ---LMLVRGIDECFDRISAEF--SSMRFVTAWPGFDGYRA--------RIAVSGL--RHFEIGLT-DDLLLDPNDLAQV-  133 (337)
T ss_dssp             ---EEEESHHHHHHHHHHHHS--TTSEEEEESSSCSHHHH--------HHTTSCC--EEEEECBC-TTSSBCHHHHTTC-
T ss_pred             ---EEEeCCHHHHHHHHHHhc--CCCeEEEeCCCcHHHHH--------HHHHcCC--EEEEecCC-CCCCCCHHHHHhh-
Confidence               3447776 7888777776  99999999988876532        2334454  55666666 4578999999875 


Q ss_pred             hhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCccc--CCCCCce
Q 013217          166 ILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSL--RGPRGGM  241 (447)
Q Consensus       166 ~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l--~Gp~gG~  241 (447)
                        .++++|++++++||+  ..|.+++.++|+++++ +++|++|. ++...+.........+++++|+||++  +|+|.|+
T Consensus       134 --~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~-~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~  209 (337)
T 3p1t_A          134 --SRDDCVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYV-DYSSFRARGLAYGENELVFRSFSKSYGLAGLRLGA  209 (337)
T ss_dssp             --CTTEEEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTG-GGSSCSSSCCCCBTTEEEEEESSSTTCCTTTCCEE
T ss_pred             --cCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCCh-hhccccccccccCCCEEEEeeCchhccCcchheEE
Confidence              278999998888775  8899999999999997 56699974 33222211111224679999999998  4778899


Q ss_pred             EEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCC
Q 013217          242 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSD  321 (447)
Q Consensus       242 i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~  321 (447)
                      ++.++      ++.+.+.....+   ++++....+++..+++..  ..+.+..+++.++++.+.+.|++.|+++..+  .
T Consensus       210 ~~~~~------~~~~~l~~~~~~---~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~  276 (337)
T 3p1t_A          210 LFGPS------ELIAAMKRKQWF---CNVGTLDLHALEAALDND--RAREAHIAKTLAQRRRVADALRGLGYRVASS--E  276 (337)
T ss_dssp             EECCH------HHHHHHHTTSCT---TCSCHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHHHHHHTTCCBCCC--S
T ss_pred             EEeCH------HHHHHHHhhcCC---CCCCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHCcCEECCC--C
Confidence            99987      777777654322   345555555555555431  2356677888888999999999888877543  2


Q ss_pred             CeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          322 NHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       322 ~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      ..++++...    ++.++.+.|.++||.++.+..++     .++.+|+++.   +    ++|++++.++|++++
T Consensus       277 ~~~~~~~~~----~~~~~~~~l~~~gi~v~~g~~~~-----~~~~iRis~~---~----~~~~~~l~~al~~~~  334 (337)
T 3p1t_A          277 ANFVLVENA----AGERTLRFLRERGIQVKDAGQFG-----LHHHIRISIG---R----EEDNDRLLAALAEYS  334 (337)
T ss_dssp             SSEEEEECT----TTHHHHHHHHHTTEECEEGGGGT-----CCSEEEEECC---C----HHHHHHHHHHHHHHT
T ss_pred             CeEEEEEcC----CHHHHHHHHHHCCeEEEECccCC-----CCCeEEEecC---C----HHHHHHHHHHHHHHh
Confidence            344555543    34678888999999997653332     1468999965   3    899999999998764

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=99.95  E-value=5e-26  Score=224.03  Aligned_cols=335  Identities=12%  Similarity=0.057  Sum_probs=226.7

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCc
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSG   95 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sG   95 (447)
                      +..++|..+++.  .++.+.+++...+.+. ..+|+..      ....++++...+++.+.+|++  ++    +|.+++|
T Consensus        30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~------~g~~~l~~~la~~~~~~~g~~~~~~----~v~~~~g   98 (388)
T 1j32_A           30 IDVCSFSAGEPDFNTPKHIVEAAKAALEQG-KTRYGPA------AGEPRLREAIAQKLQRDNGLCYGAD----NILVTNG   98 (388)
T ss_dssp             CCCEECCCSSCSSCCCHHHHHHHHHHHHTT-CCSCCCT------TCCHHHHHHHHHHHHHHHCCCCCGG----GEEEESH
T ss_pred             CCEEECCCCCCCCCCCHHHHHHHHHHHhcC-CCCCCCC------CCCHHHHHHHHHHHHHhcCCCCChh----hEEEcCC
Confidence            456888777764  4789999988877542 1233321      223456666667787777864  33    2334565


Q ss_pred             -HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhhCCcEE
Q 013217           96 -SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLI  173 (447)
Q Consensus        96 -s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~~~kli  173 (447)
                       ++|+..++.++++|||+|++.++.|.++..        .+...|.  +++.+++++ +++.+|+++|++++++ ++++|
T Consensus        99 ~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v  167 (388)
T 1j32_A           99 GKQSIFNLMLAMIEPGDEVIIPAPFWVSYPE--------MVKLAEG--TPVILPTTVETQFKVSPEQIRQAITP-KTKLL  167 (388)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEESSCCTHHHH--------HHHHTTC--EEEEECCCGGGTTCCCHHHHHHHCCT-TEEEE
T ss_pred             HHHHHHHHHHHhcCCCCEEEEcCCCChhHHH--------HHHHcCC--EEEEecCCcccCCCCCHHHHHHhcCc-CceEE
Confidence             599999999999999999999998876531        2334454  455555553 2467999999999987 88999


Q ss_pred             EEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCC---C----CcccEEEeCCCccc--CCCCC
Q 013217          174 IAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADP---F----KYCDVVTTTTHKSL--RGPRG  239 (447)
Q Consensus       174 i~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~---~----~~~Di~~~s~~K~l--~Gp~g  239 (447)
                      ++++++||+  ..   ++++|.++|+++|+++++|++|+. +...+....+   +    .+.|+++.|+||++  +|.|.
T Consensus       168 ~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~  246 (388)
T 1j32_A          168 VFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEK-ILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRV  246 (388)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT-CBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCC
T ss_pred             EEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchh-cccCCCCCCCHHHccccccCCEEEEeechhccCCcccce
Confidence            888777764  43   489999999999999999999754 3332211111   1    13689999999998  45667


Q ss_pred             ceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeC
Q 013217          240 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSG  318 (447)
Q Consensus       240 G~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~  318 (447)
                      |++++++      ++.+.+......+..+. +....++...+++.. ...+++..+++.++++.+.+.|++. |+++..+
T Consensus       247 G~~~~~~------~~~~~l~~~~~~~~~~~-~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~  318 (388)
T 1j32_A          247 GFLAGPV------PLVKAATKIQGHSTSNV-CTFAQYGAIAAYENS-QDCVQEMLAAFAERRRYMLDALNAMPGLECPKP  318 (388)
T ss_dssp             EEEECCH------HHHHHHHHHHHTTTCSC-CHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCC
T ss_pred             EEEEeCH------HHHHHHHHHHhhcccCC-CHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCC
Confidence            9999987      67776655433333333 333333333455532 3345777888899999999999885 8876643


Q ss_pred             CCCCeeEEecCCCCCCCHHHHHHHHhh-cCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          319 GSDNHLVLVDLRPMGIDGARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       319 ~~~~~~~~v~~~~~~~~~~~~~~~L~~-~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                       ..+.+.|+++...+.+..++.+.|.+ +||.+..+...+     .++.+|+++.  ++    +++++++++.|.++++.
T Consensus       319 -~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~-----~~~~iRis~~--~~----~~~i~~~~~~l~~~l~~  386 (388)
T 1j32_A          319 -DGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFG-----ADDCIRLSYA--TD----LDTIKRGMERLEKFLHG  386 (388)
T ss_dssp             -CBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGT-----CTTBEEEECC--SC----HHHHHHHHHHHHHHHHH
T ss_pred             -CeeEEEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhhC-----CCCcEEEEec--CC----HHHHHHHHHHHHHHHHH
Confidence             33455566664324567788887764 899986542221     1458999975  44    89999999999887753

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.95  E-value=7.9e-26  Score=220.55  Aligned_cols=317  Identities=16%  Similarity=0.120  Sum_probs=226.8

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHH
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP   97 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~   97 (447)
                      +..|+|..++|+  +++.+++++...+..  ..+||..       ...++    ++++++++|++++++   +.+++|++
T Consensus        32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~~-------~~~~l----r~~la~~~~~~~~~v---~~~~g~t~   95 (363)
T 3ffh_A           32 TKITKLSSNENPLGTSKKVAAIQANSSVE--TEIYPDG-------WASSL----RKEVADFYQLEEEEL---IFTAGVDE   95 (363)
T ss_dssp             SCCEECSSCSCTTCCCHHHHHHHHTCBSC--CCBC-----------CHHH----HHHHHHHHTCCGGGE---EEESSHHH
T ss_pred             CceEEccCCCCCCCCCHHHHHHHHHHHHH--hhcCCCc-------chHHH----HHHHHHHhCCChhhE---EEeCCHHH
Confidence            356888888886  479999999876643  2234321       12233    468888999876533   22344458


Q ss_pred             HHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcC
Q 013217           98 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA  177 (447)
Q Consensus        98 a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~  177 (447)
                      ++..++.+++++||+|++.++.|.++..        .+...|.  +++.+++++ ++.+|++++++++++ +|++|+++.
T Consensus        96 a~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~-~~~~d~~~l~~~i~~-~~~~v~~~~  163 (363)
T 3ffh_A           96 LIELLTRVLLDTTTNTVMATPTFVQYRQ--------NALIEGA--EVREIPLLQ-DGEHDLEGMLNAIDE-KTTIVWICN  163 (363)
T ss_dssp             HHHHHHHHHCSTTCEEEEEESSCHHHHH--------HHHHHTC--EEEEEECCT-TSCCCHHHHHHHCCT-TEEEEEEES
T ss_pred             HHHHHHHHHccCCCEEEEcCCChHHHHH--------HHHHcCC--EEEEecCCC-CCCcCHHHHHHhccc-CCCEEEEeC
Confidence            9999999999999999999987765421        2334454  555666663 678999999999987 899999987


Q ss_pred             CCCCC--CCChHHHHHHHHHh--CCEEEEehhhhccccccccCCCCCC-----cccEEEeCCCccc--CCCCCceEEeec
Q 013217          178 SAYPR--DFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK-----YCDVVTTTTHKSL--RGPRGGMIFFKK  246 (447)
Q Consensus       178 ~~~~~--~~~~~~i~~ia~~~--g~~livD~a~~~g~~~~~~~~~~~~-----~~Di~~~s~~K~l--~Gp~gG~i~~~~  246 (447)
                      ++||+  ..|.+++.++|+.+  |+++++|++|+.+ .. +.......     ..++++.|++|++  +|.|.|++++++
T Consensus       164 p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~-~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~  241 (363)
T 3ffh_A          164 PNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEY-VT-PQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADK  241 (363)
T ss_dssp             SCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGG-CS-SCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECH
T ss_pred             CCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhh-cC-ccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecCH
Confidence            77775  78999999999888  9999999998633 22 21111111     2347889999987  466669999977


Q ss_pred             CCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEeeeCCCCCeeE
Q 013217          247 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGSDNHLV  325 (447)
Q Consensus       247 ~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~  325 (447)
                            ++.+.+.....+   .+++....+++..+++..  ..+++..+++.++++.+.+.|++ .|+++..+  ...++
T Consensus       242 ------~~~~~l~~~~~~---~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~--~~~~~  308 (363)
T 3ffh_A          242 ------EIIRQLNIVRPP---FNTTSIGQKLAIEAIKDQ--AFIGECRTSNANGIKQYEAFAKRFEKVKLYPA--NGNFV  308 (363)
T ss_dssp             ------HHHHHHHHTCCS---CCCBHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHHHHHHCTTCEECCC--CSSEE
T ss_pred             ------HHHHHHHHhCCC---CCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHhhCCCceECCC--CCeEE
Confidence                  787777765432   345666666666666632  34577888899999999999999 89987653  34456


Q ss_pred             EecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          326 LVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       326 ~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                      ++++..   +..++.+.|.++||.++.+..++     .++.+|++++   +    ++|+++++++|+++
T Consensus       309 ~~~~~~---~~~~~~~~l~~~gi~v~~g~~~~-----~~~~iRis~~---~----~~~i~~~~~~l~~~  362 (363)
T 3ffh_A          309 LIDLGI---EAGTIFSYLEKNGYITRSGAALG-----FPTAVRITIG---K----EEDNSAVIALLEKL  362 (363)
T ss_dssp             EEECSS---CHHHHHHHHHHTTEECEETTTTT-----CTTEEEEECC---C----HHHHHHHHHHHHHH
T ss_pred             EEECCC---CHHHHHHHHHHCCeEEEeCccCC-----CCCeEEEECC---C----HHHHHHHHHHHHHh
Confidence            777753   67889999989999997543222     1568999965   4    89999999999875

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.95  E-value=2.6e-27  Score=230.18  Aligned_cols=338  Identities=12%  Similarity=0.062  Sum_probs=226.0

Q ss_pred             CeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCC-cccCchhHHHHHHHHHHHHHHHHcCCCCC-ccceeeecCCcHHHH
Q 013217           22 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDEN-KWGVNVQPLSGSPAN   99 (447)
Q Consensus        22 ~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~-~~~~g~~~~~~le~~~~~~~~~~~g~~~~-~~~~~v~~~sGs~a~   99 (447)
                      ++| .++..++|++|+++|...+.+.++.|.... .++.+.++.+.++ .+++.+++++|++.+ ++  .+.+.+||.++
T Consensus        15 ~~n-~at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~-~ar~~la~ll~~~~~~ev--if~t~~~T~a~   90 (377)
T 3e77_A           15 TEN-LYFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIIN-NTENLVRELLAVPDNYKV--IFLQGGGCGQF   90 (377)
T ss_dssp             CCC-EECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHH-HHHHHHHHHHTCCTTEEE--EEESSHHHHHH
T ss_pred             ccc-ccccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHH-HHHHHHHHHhCCCCCCeE--EEEcCchHHHH
Confidence            344 466678899999999998876543222211 1234556666665 688999999999753 32  11124567999


Q ss_pred             HHHHHHhcCC--CCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcC
Q 013217          100 FEVYTAILKP--HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA  177 (447)
Q Consensus       100 ~~~~~al~~p--gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~  177 (447)
                      .+++.+++.+  ||+|++....+.++   .+.   ..++..|  +.++.++++ +++.+++++++..+++ +|++|.++.
T Consensus        91 n~a~~~l~~~~~Gd~v~~~~~g~~~~---~~~---~~a~~~G--~~~~~~~~~-~~~~~~~~~~~~~i~~-~t~lV~~~h  160 (377)
T 3e77_A           91 SAVPLNLIGLKAGRCADYVVTGAWSA---KAA---EEAKKFG--TINIVHPKL-GSYTKIPDPSTWNLNP-DASYVYYCA  160 (377)
T ss_dssp             HHHHHHHGGGSTTCEEEECCCSHHHH---HHH---HHHTTTS--EEEECSCCC-SSSCSCCCGGGCCCCT-TCSCEEEES
T ss_pred             HHHHHhccCCCCCCeEEEEECCHHHH---HHH---HHHHHhC--CceEEeccC-CCcCCCCChHHhccCC-CccEEEEeC
Confidence            9999999865  99998776544332   211   1122234  344444454 3455777777766665 899988874


Q ss_pred             CCC--CCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCc-----
Q 013217          178 SAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPV-----  249 (447)
Q Consensus       178 ~~~--~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~-----  249 (447)
                      ..+  +...|+     +|+++|+++++|++|++|.++.++..     .|++++|.|||+ ||.| |+++++++..     
T Consensus       161 ~et~tG~~~pi-----i~~~~~~~~~vD~~q~~g~~~id~~~-----~~~~~~s~~K~~-gp~G~g~l~~~~~~l~~~~~  229 (377)
T 3e77_A          161 NETVHGVEFDF-----IPDVKGAVLVCDMSSNFLSKPVDVSK-----FGVIFAGAQKNV-GSAGVTVVIVRDDLLGFALR  229 (377)
T ss_dssp             EETTTTEECSS-----CCCCTTCCEEEECTTTTTSSCCCGGG-----CSEEEEEGGGTT-SCTTCEEEEEETTSCSCCCT
T ss_pred             ccCchheEchh-----hhccCCCEEEEEcccccCCCCCchhh-----cCEEEEeccccc-CCCccEEEEEcHHHHhhccC
Confidence            433  336777     47889999999999999977655433     457899999999 8999 9999998631     


Q ss_pred             chhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcCh-hHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCC--CCe-e
Q 013217          250 LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVEL-GYKLVSGGS--DNH-L  324 (447)
Q Consensus       250 ~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~--~~~-~  324 (447)
                      ..+.+.+...........+||+...+.++..|++++.+. |++...++..+.++++.+.|.+. |+.+.....  .+. .
T Consensus       230 ~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~i  309 (377)
T 3e77_A          230 ECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMN  309 (377)
T ss_dssp             TSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSE
T ss_pred             CCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcE
Confidence            001111000001112346899999999999999998877 78999999999999999999985 887533211  122 2


Q ss_pred             EEecCCCCCCCH-----HHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          325 VLVDLRPMGIDG-----ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       325 ~~v~~~~~~~~~-----~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      +.+.+.  ++++     ..+...|.++||.+..    ++.   ..+++|+|+..++|    ++|+++++++|+++++.
T Consensus       310 vsf~~~--~~~~~~~~~~~~l~~l~~~Gi~~~~----g~~---~~g~iRiS~~~~~t----~edId~l~~al~~~~~~  374 (377)
T 3e77_A          310 IPFRIG--NAKGDDALEKRFLDKALELNMLSLK----GHR---SVGGIRASLYNAVT----IEDVQKLAAFMKKFLEM  374 (377)
T ss_dssp             EEEEES--STTCCHHHHHHHHHHHHHTTEESCB----CCT---TTCSEEEECCTTSC----HHHHHHHHHHHHHHHHH
T ss_pred             EEEEcC--CCCCchhHHHHHHHHHHHCCcEEeC----CCC---cCCEEEEECCCCCC----HHHHHHHHHHHHHHHHH
Confidence            333333  3322     2455666789999743    332   13469999998888    99999999999988763

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.95  E-value=3.9e-26  Score=225.04  Aligned_cols=328  Identities=15%  Similarity=0.101  Sum_probs=222.8

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCc
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSG   95 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sG   95 (447)
                      +..|+|..+++.  .++.+.+++...+... ..+|+.      .....++++...+++.+.+|++  ++.    |.+++|
T Consensus        41 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~------~~g~~~lr~~la~~~~~~~g~~~~~~~----v~~~~g  109 (389)
T 1o4s_A           41 EDVINLTAGEPDFPTPEPVVEEAVRFLQKG-EVKYTD------PRGIYELREGIAKRIGERYKKDISPDQ----VVVTNG  109 (389)
T ss_dssp             CCCEECCCSSCSSCCCHHHHHHHHHHHTTC-CCCCCC------TTCCHHHHHHHHHHHHHHHTCCCCGGG----EEEESH
T ss_pred             CCEEEccCCCCCCCCCHHHHHHHHHHHhcC-CCCCCC------CCCCHHHHHHHHHHHHHHhCCCCCHHH----EEEecC
Confidence            456888777764  4789999998877542 123332      1223466666666777777863  432    333555


Q ss_pred             -HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhhCCcEE
Q 013217           96 -SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLI  173 (447)
Q Consensus        96 -s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~~~kli  173 (447)
                       ++|+..++.++++|||+|++.++.|.++..        .+...|.  +++.+++++ +++.+|+++|++++++ ++++|
T Consensus       110 ~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v  178 (389)
T 1o4s_A          110 AKQALFNAFMALLDPGDEVIVFSPVWVSYIP--------QIILAGG--TVNVVETFMSKNFQPSLEEVEGLLVG-KTKAV  178 (389)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECCGGGTTCCCHHHHHHTCCT-TEEEE
T ss_pred             HHHHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHcCC--EEEEEecCCccCCCCCHHHHHHhccc-CceEE
Confidence             589999999999999999999998876531        2334454  455555554 2567999999999977 88998


Q ss_pred             EEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCC--CC---CcccEEEeCCCcccC--CCCCce
Q 013217          174 IAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PF---KYCDVVTTTTHKSLR--GPRGGM  241 (447)
Q Consensus       174 i~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~--~~---~~~Di~~~s~~K~l~--Gp~gG~  241 (447)
                      +++.++||+  ..+   +++|.++|+++|+++++|++|+.+. ..+...+  .+   ...|++++|+||+++  |.|.|+
T Consensus       179 ~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~-~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~  257 (389)
T 1o4s_A          179 LINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLV-YTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGY  257 (389)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSB-CSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEE
T ss_pred             EEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccc-cCCCCCCHhhcCCCCCcEEEEeechhhcCCcccceEE
Confidence            888777764  555   8999999999999999999986443 2221111  01   247899999999983  556799


Q ss_pred             EEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCC
Q 013217          242 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSD  321 (447)
Q Consensus       242 i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~  321 (447)
                      +++++      ++.+.+......+..+. +....++...+++    .+.++..+++.++++.+.+.|.+.|+++..+ ..
T Consensus       258 l~~~~------~~~~~l~~~~~~~~~~~-~~~~~~a~~~~l~----~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~  325 (389)
T 1o4s_A          258 LISSE------KVATAVSKIQSHTTSCI-NTVAQYAALKALE----VDNSYMVQTFKERKNFVVERLKKMGVKFVEP-EG  325 (389)
T ss_dssp             EECCH------HHHHHHHHHHHHHTCSC-CHHHHHHHHHHTT----CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCC-SB
T ss_pred             EEeCH------HHHHHHHHHhhhcccCC-CHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHHHHHhcCCeeecC-Cc
Confidence            99987      67666654332222233 3333333333332    2356778888999999999998888877543 33


Q ss_pred             CeeEEecCCCCCCCHHHHHHHHh-hcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          322 NHLVLVDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       322 ~~~~~v~~~~~~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      +.+.|+++.   .+..++.+.|. ++||.+..+..++     .++.+|++++.  +    +++++++++.|.+++.
T Consensus       326 ~~~~~~~~~---~~~~~l~~~l~~~~gi~v~~g~~f~-----~~~~~Ris~~~--~----~~~l~~~l~~l~~~l~  387 (389)
T 1o4s_A          326 AFYLFFKVR---GDDVKFCERLLEEKKVALVPGSAFL-----KPGFVRLSFAT--S----IERLTEALDRIEDFLN  387 (389)
T ss_dssp             SSEEEEECS---SCHHHHHHHHHHHHCEECEEGGGGT-----CTTEEEEECCS--C----HHHHHHHHHHHHHHHT
T ss_pred             ceEEEEeCC---CCHHHHHHHHHHHCCEEEeCchhcC-----CCCeEEEEEeC--C----HHHHHHHHHHHHHHHh
Confidence            556677764   35777888775 8999986542221     13589999762  4    8899999998887764

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.95  E-value=1.7e-26  Score=228.19  Aligned_cols=333  Identities=16%  Similarity=0.177  Sum_probs=228.3

Q ss_pred             CeeEecCCC--C-CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHH
Q 013217           22 SLELIASEN--F-TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA   98 (447)
Q Consensus        22 ~i~l~~~~n--~-~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a   98 (447)
                      .++|..+++  + .++.+.+++...+.. +..++.+.++..|.   ..+.+..++++++++|.+.     .+.+++|++|
T Consensus        45 ~idl~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~g~---~~~~~~l~~~la~~~g~~~-----v~~~~ggt~a  115 (398)
T 3a2b_A           45 VLMFGSNSYLGLTTDTRIIKAAQDALEK-YGTGCAGSRFLNGT---LDIHVELEEKLSAYVGKEA-----AILFSTGFQS  115 (398)
T ss_dssp             EEECSCSCTTCGGGCHHHHHHHHHHHHH-HCSCCCSBTTTTCC---CHHHHHHHHHHHHHHTCSE-----EEEESSHHHH
T ss_pred             EEEeecccccCCCCCHHHHHHHHHHHHH-cCCCCCCcCcccCC---cHHHHHHHHHHHHHhCCCc-----EEEECCHHHH
Confidence            466666654  2 678999999887754 22233322222221   1223344578889999752     2445677799


Q ss_pred             HHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh---CCcEEEE
Q 013217           99 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF---RPKLIIA  175 (447)
Q Consensus        99 ~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~---~~klii~  175 (447)
                      +..++.++++|||+|++.+|.|+++..        .+...|.  +++.++.      +|+++|++++++.   ++++|++
T Consensus       116 ~~~~~~~~~~~gd~V~~~~p~~~~~~~--------~~~~~g~--~~~~v~~------~d~~~l~~~l~~~~~~~~~~v~~  179 (398)
T 3a2b_A          116 NLGPLSCLMGRNDYILLDERDHASIID--------GSRLSFS--KVIKYGH------NNMEDLRAKLSRLPEDSAKLICT  179 (398)
T ss_dssp             HHHHHHHSSCTTCEEEEETTCCHHHHH--------HHHHSSS--EEEEECT------TCHHHHHHHHHTSCSSSCEEEEE
T ss_pred             HHHHHHHHhCCCCEEEECCccCHHHHH--------HHHHcCC--ceEEeCC------CCHHHHHHHHHhhccCCceEEEE
Confidence            999999999999999999998877632        2334454  4445432      6899999999764   6899998


Q ss_pred             cCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhcccccc-ccC--C-CCCC-cccEEEeCCCcccCCCCCceEEeecCC
Q 013217          176 GASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAA-SVV--A-DPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDP  248 (447)
Q Consensus       176 ~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~-~~~--~-~~~~-~~Di~~~s~~K~l~Gp~gG~i~~~~~~  248 (447)
                      ++++||+  ..++++|.++|+++|+++++|++|+.|.... +..  . .... .+|++++|+||+++ |.||++++++  
T Consensus       180 ~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~GG~~~~~~--  256 (398)
T 3a2b_A          180 DGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLA-SLGGFVAGDA--  256 (398)
T ss_dssp             ESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTC-SSCEEEEECH--
T ss_pred             eCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEeccccccc-CCCcEEEeCH--
Confidence            8777764  7799999999999999999999987664311 110  0 0111 25999999999985 6679999987  


Q ss_pred             cchhhHHHHhhhccC-CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEe
Q 013217          249 VLGVELESAINNAVF-PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLV  327 (447)
Q Consensus       249 ~~~~~~~~~i~~~~~-~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v  327 (447)
                          ++.+.+..... ....++++..+.++...+++...  ..++..+++.++++.+.+.|++.|+++..+  ..+++++
T Consensus       257 ----~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~g~~~~~  328 (398)
T 3a2b_A          257 ----DVIDFLKHNARSVMFSASMTPASVASTLKALEIIQ--NEPEHIEKLWKNTDYAKAQLLDHGFDLGAT--ESPILPI  328 (398)
T ss_dssp             ----HHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHH--HCTHHHHHHHHHHHHHHHHHHHTTCCBCSC--CSSEEEE
T ss_pred             ----HHHHHHHHhcccceecCCCCHHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHHHHHHHhcCCCcCCC--CCCEEEE
Confidence                67776654211 11233455555555555676532  235678888999999999999888877643  3466777


Q ss_pred             cCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          328 DLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       328 ~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      .+.. +.+..++.+.|.++||.+..+..++.  +...+.+|++++..++    ++|++++++.|+++++.
T Consensus       329 ~~~~-~~~~~~l~~~l~~~gi~v~~~~~~~~--~~~~~~iRis~~~~~~----~e~i~~~~~~l~~~l~~  391 (398)
T 3a2b_A          329 FIRS-NEKTFWVTKMLQDDGVFVNPVVSPAV--PAEESLIRFSLMATHT----YDQIDEAIEKMVKVFKQ  391 (398)
T ss_dssp             ECCC-HHHHHHHHHHHHHTTEECEEECTTTS--CGGGCEEEEECCTTCC----HHHHHHHHHHHHHHHHH
T ss_pred             EcCC-HHHHHHHHHHHHHCCcEEEeeCCCCC--CCCCceEEEEEeCCCC----HHHHHHHHHHHHHHHHH
Confidence            7642 33466788888888999876433221  1124689999887666    99999999999998764

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.95  E-value=6.6e-27  Score=228.15  Aligned_cols=331  Identities=13%  Similarity=0.078  Sum_probs=220.4

Q ss_pred             cCeeEecCCCCCCHHHHHHHhhhhhccCCCCCC--CCcccCchhHHHHHHHHHHHHHHHHcCCCCC-ccceeeecCC-cH
Q 013217           21 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLP--GKRYYGGNEYIDELETLCQKRALAAFNLDEN-KWGVNVQPLS-GS   96 (447)
Q Consensus        21 ~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~--~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~-~~~~~v~~~s-Gs   96 (447)
                      ..+.+.+++..+|+.|++++...+.+.+..|..  ...++ +... ..+.+.+++++++++|++.+ ++   +.+++ |+
T Consensus         4 ~~~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~la~~~g~~~~~~~---i~~t~g~t   78 (362)
T 2c0r_A            4 RAYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHR-GAVY-EAVHNEAQARLLALLGNPTGYKV---LFIQGGAS   78 (362)
T ss_dssp             CCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTT-SHHH-HHHHHHHHHHHHHHTTCCSSEEE---EEESSHHH
T ss_pred             ceeeccCCCCCCCHHHHHHHHHHHhhhhhcCccccccCCC-cHHH-HHHHHHHHHHHHHHhCCCCCcEE---EEECCCch
Confidence            356788999999999999998877543221111  00111 2222 33344677899999999753 32   23344 45


Q ss_pred             HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhhCCcEEEE
Q 013217           97 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLIIA  175 (447)
Q Consensus        97 ~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~~~klii~  175 (447)
                      +++..++.++++|||+|++.++.+.++..  .    ..+...| .+..++++.+. .+..+|.++++  +++ +||+|++
T Consensus        79 ~a~~~~~~~l~~~gd~vl~~~~~~~~~~~--~----~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~-~t~~v~~  148 (362)
T 2c0r_A           79 TQFAMIPMNFLKEGQTANYVMTGSWASKA--L----KEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQD-NAAYLHL  148 (362)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEECSHHHHHH--H----HHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCT-TEEEEEE
T ss_pred             HHHHHHHHhcCCCCCeEEEEecCcHhHHH--H----HHHHHhC-CeEEEecccccccccCCCHHHcc--cCC-CcCEEEE
Confidence            99999999999999999987654333210  0    1122345 44555533111 12236776654  555 7999988


Q ss_pred             cCCCCCC--C-CChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcch
Q 013217          176 GASAYPR--D-FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLG  251 (447)
Q Consensus       176 ~~~~~~~--~-~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~  251 (447)
                      ++++|++  . .|+++|      +|+++++|++|+.|....     ++...|++++|+||++ ||.| |++++++     
T Consensus       149 ~~~~n~tG~~~~~l~~i------~~~~vivD~a~~~~~~~~-----~~~~~d~~~~s~~K~~-g~~G~G~l~~~~-----  211 (362)
T 2c0r_A          149 TSNETIEGAQFKAFPDT------GSVPLIGDMSSDILSRPF-----DLNQFGLVYAGAQKNL-GPSGVTVVIVRE-----  211 (362)
T ss_dssp             ESEETTTTEECSSCCCC------TTSCEEEECTTTTTSSCC-----CGGGCSEEEEETTTTT-CCSSCEEEEEEG-----
T ss_pred             eCCcCccceeccccccc------CCCEEEEEChhhccCCcc-----chhHCcEEEEeccccc-cCcCcEEEEEcH-----
Confidence            8666664  2 467666      899999999998775432     2333599999999998 6888 9999988     


Q ss_pred             hhHHHHhhhcc-----------CCCCCCCCcHHHHHHHHHHHHHhcCh-hHHHHHHHHHHHHHHHHHHHHHCC-c-Eeee
Q 013217          252 VELESAINNAV-----------FPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVELG-Y-KLVS  317 (447)
Q Consensus       252 ~~~~~~i~~~~-----------~~~~~g~p~~~~~aal~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g-~-~~~~  317 (447)
                       ++.+.+....           .....++++...++++..|++.+... ++++..++..++++++.+.|++.| + ++..
T Consensus       212 -~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~  290 (362)
T 2c0r_A          212 -DLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCV  290 (362)
T ss_dssp             -GGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESS
T ss_pred             -HHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCC
Confidence             4444333210           11224678888888888899876544 578889999999999999999887 6 7643


Q ss_pred             CC--CCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          318 GG--SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       318 ~~--~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      +.  .....+++.+.. +.+..++.+.|.++||.+.    |+...   .+++|+|+...++    ++|+++++++|++++
T Consensus       291 ~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~gi~~~----~g~~~---~~~iRis~~~~~~----~e~i~~l~~~l~~~~  358 (362)
T 2c0r_A          291 DVDSRSDMNITFRLAS-EELEKEFVKASEQEGFVGL----KGHRS---VGGLRASIYNAVP----YESCEALVQFMEHFK  358 (362)
T ss_dssp             CGGGBCSSEEEEECSC-HHHHHHHHHHHHHTTEESC----BCCTT---TCSEEEECCTTSC----HHHHHHHHHHHHHHH
T ss_pred             ChHHcCCcEEEEEcCC-cchHHHHHHHHHHCCCeec----cCCCC---CCEEEEECCCCCC----HHHHHHHHHHHHHHH
Confidence            21  122344555532 3356778888999999763    33221   3479999987777    999999999998876


Q ss_pred             H
Q 013217          396 E  396 (447)
Q Consensus       396 ~  396 (447)
                      +
T Consensus       359 ~  359 (362)
T 2c0r_A          359 R  359 (362)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.95  E-value=7.1e-27  Score=226.33  Aligned_cols=330  Identities=11%  Similarity=0.033  Sum_probs=224.7

Q ss_pred             hcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCc---ccCchhHHHHHHHHHHHHHHHHcCCCCC-ccceeeecCCc
Q 013217           20 FKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKR---YYGGNEYIDELETLCQKRALAAFNLDEN-KWGVNVQPLSG   95 (447)
Q Consensus        20 ~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~---~~~g~~~~~~le~~~~~~~~~~~g~~~~-~~~~~v~~~sG   95 (447)
                      ++.+++.|+...+|++|+++|...+.+.+  +++.+-   .+.+.++.+.++ .+++.+++++|++.+ ++  .+.+.+|
T Consensus         4 ~~~~~f~pgpt~~~~~V~~a~~~~~~~~~--~~~~s~~~~~hr~~~~~~~~~-~~r~~la~ll~~~~~~~v--~f~t~~~   78 (361)
T 3m5u_A            4 MRKINFSAGPSTLPLEILEQAQKELCDYQ--GRGYSIMEISHRTKVFEEVHF-GAQEKAKKLYELNDDYEV--LFLQGGA   78 (361)
T ss_dssp             CCCEECCSSSCCCCHHHHHHHHHTSSSGG--GSSSCGGGSCSSSHHHHHHHH-HHHHHHHHHHTCCTTEEE--EEESSHH
T ss_pred             cceEeecCCCCCCcHHHHHHHHHHHHhcc--cCCceeeccCCCCHHHHHHHH-HHHHHHHHHhCCCCCceE--EEEcCcH
Confidence            35688999999999999999999887644  333331   133556666665 688999999999743 32  1223556


Q ss_pred             HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCC-CCHHHHHHHhhhhCCcEEE
Q 013217           96 SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGL-VDYDMLEKTAILFRPKLII  174 (447)
Q Consensus        96 s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-id~~~l~~~~~~~~~klii  174 (447)
                      |+++.+++.+++ +||+++.....+   ++|.+.   ..+...|.  ++..+++++++.. +++++ +  +++ +|++|.
T Consensus        79 T~a~n~~~~~~~-~~~~~~~i~~~~---~~~~~~---~~a~~~G~--~v~~~~~~~~g~~~~~~~~-~--l~~-~t~lv~  145 (361)
T 3m5u_A           79 SLQFAMIPMNLA-LNGVCEYANTGV---WTKKAI---KEAQILGV--NVKTVASSEESNFDHIPRV-E--FSD-NADYAY  145 (361)
T ss_dssp             HHHHHHHHHHHC-CSSCEEEEECSH---HHHHHH---HHHHHTTC--CEEEEEECTTTTSCSCCCC-C--CCT-TSSEEE
T ss_pred             HHHHHHHHHhcC-CCCeEEEEeCCH---HHHHHH---HHHHHcCC--ceEEEecccCcCCCcCChh-h--cCC-CCCEEE
Confidence            699999999998 899764333222   222211   01122343  3444445533211 56666 4  666 899988


Q ss_pred             EcCCCC-CC-CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcch
Q 013217          175 AGASAY-PR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLG  251 (447)
Q Consensus       175 ~~~~~~-~~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~  251 (447)
                      +++..+ .+ ..|.     +++ +|+++++|++|++|.++.++.     ..|++++|+|||+ ||.| |++++++     
T Consensus       146 ~~~~e~~tG~~~~~-----i~~-~~~~~~vD~~q~~g~~~id~~-----~~d~~~~s~~K~~-gp~G~g~l~~~~-----  208 (361)
T 3m5u_A          146 ICSNNTIYGTQYQN-----YPK-TKTPLIVDASSDFFSRKVDFS-----NIALFYGGVQKNA-GISGLSCIFIRK-----  208 (361)
T ss_dssp             EESEETTTTEECSS-----CCC-CSSCEEEECGGGTTSSCCCCT-----TEEEEEEETTTTS-SCTTCEEEEEEH-----
T ss_pred             EeCCCCCcceeCCc-----ccc-cCCEEEEEcccccCCCCCCcc-----cCCEEEEechhcc-CCCccEEEEEcH-----
Confidence            874433 23 4441     344 499999999999997755443     4799999999999 7999 9999998     


Q ss_pred             hhHHHHhhhc------------cCCCCCCCCcHHHHHHHHHHHHHhcCh-hHHHHHHHHHHHHHHHHHHHHHCC-c-Eee
Q 013217          252 VELESAINNA------------VFPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVELG-Y-KLV  316 (447)
Q Consensus       252 ~~~~~~i~~~------------~~~~~~g~p~~~~~aal~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g-~-~~~  316 (447)
                       ++.+++.+.            ......+||+...+.++..|++++.+. |++...++..+.++++.+.|.+.+ + .+.
T Consensus       209 -~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~  287 (361)
T 3m5u_A          209 -DMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGH  287 (361)
T ss_dssp             -HHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEES
T ss_pred             -HHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeecc
Confidence             454443320            012235899999999999999999888 789999999999999999999866 5 554


Q ss_pred             eCCC-C-CeeEEecCCC-CCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217          317 SGGS-D-NHLVLVDLRP-MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       317 ~~~~-~-~~~~~v~~~~-~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~  393 (447)
                      .+.. . .+.+.+.+.. .+++ .++...|.++||.+..+    +.   ..+++|+|++.++|    ++|+++++++|++
T Consensus       288 ~~~~~rs~~ivsf~~~~~~~~~-~~~~~~L~~~gI~~~~g----~~---~~g~iRiS~~~~~t----~edId~l~~al~~  355 (361)
T 3m5u_A          288 ADKKDRSLMNVSFNIAKNKDLE-PLFVKEAEEAGMIGLKG----HR---ILGGIRASIYNALN----LDQVKTLCEFMKE  355 (361)
T ss_dssp             SCGGGBCSSEEEEEESSCTTHH-HHHHHHHHHTTEECCBC----CT---TTCSEEEECCTTSC----HHHHHHHHHHHHH
T ss_pred             CCHHHcCCeEEEEECCCchhhh-HHHHHHHHHCCCEEecC----CC---ccCeEEEEccCCCC----HHHHHHHHHHHHH
Confidence            3211 1 2233344432 2334 46778889999998542    21   12469999998888    9999999999998


Q ss_pred             HHHH
Q 013217          394 GVEI  397 (447)
Q Consensus       394 ~l~~  397 (447)
                      +.+.
T Consensus       356 ~~~~  359 (361)
T 3m5u_A          356 FQGK  359 (361)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7653

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.95  E-value=6.8e-26  Score=223.10  Aligned_cols=323  Identities=13%  Similarity=0.092  Sum_probs=216.7

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh-cCCC
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPH  110 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al-~~pg  110 (447)
                      +++.+++++...+.... .+     | ...+...+++    +.+++++|.+.     .|.++||++|+..++.++ ++||
T Consensus        15 ~~~~~~~a~~~~l~~~~-~~-----~-~~~~~~~~l~----~~la~~~~~~~-----~i~~~sGt~al~~~l~~l~~~~g   78 (388)
T 1b9h_A           15 YDDAERNGLVRALEQGQ-WW-----R-MGGDEVNSFE----REFAAHHGAAH-----ALAVTNGTHALELALQVMGVGPG   78 (388)
T ss_dssp             CCHHHHHHHHHHHHTSC-CB-----T-TTCSHHHHHH----HHHHHHTTCSE-----EEEESCHHHHHHHHHHHTTCCTT
T ss_pred             CCHHHHHHHHHHHHcCC-ee-----e-cCCHHHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHcCCCCc
Confidence            45899999988876521 11     1 1223344554    67889999863     355689999999999999 8999


Q ss_pred             CEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCCCCChHHHH
Q 013217          111 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMR  190 (447)
Q Consensus       111 d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~~~~~~~i~  190 (447)
                      |+|+++++.|.+...        .+...|.  +++.++++++++.+|+++|++++++ ++++|+.+. .++...|+++|.
T Consensus        79 d~Vi~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~n-~tG~~~~l~~i~  146 (388)
T 1b9h_A           79 TEVIVPAFTFISSSQ--------AAQRLGA--VTVPVDVDAATYNLDPEAVAAAVTP-RTKVIMPVH-MAGLMADMDALA  146 (388)
T ss_dssp             CEEEEESSSCTHHHH--------HHHHTTC--EEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCBC-GGGCCCCHHHHH
T ss_pred             CEEEECCCccHHHHH--------HHHHcCC--EEEEEecCCCcCCCCHHHHHHhcCc-CceEEEEeC-CccCcCCHHHHH
Confidence            999999998877632        2334454  5666667765688999999999976 788877221 122378999999


Q ss_pred             HHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCceEEeecCCcchhhH--HHHhhhccCC----
Q 013217          191 QIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVEL--ESAINNAVFP----  264 (447)
Q Consensus       191 ~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~~--~~~i~~~~~~----  264 (447)
                      ++|+++|+++++|++|+.|..+.+.....++.+++.++|.||+++|++||+++++++     .+  .+.+......    
T Consensus       147 ~la~~~~~~li~D~a~~~g~~~~~~~~~~~~~i~~~S~s~~K~l~g~~~G~~~~~~~-----~~~~~~~~~~~~~~~~~~  221 (388)
T 1b9h_A          147 KISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNGKLMTAGEGGAVVFPDG-----ETEKYETAFLRHSCGRPR  221 (388)
T ss_dssp             HHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTTSSSCSSSCEEEEECTT-----CHHHHHHHHHHTBTTCCT
T ss_pred             HHHHHcCCEEEEecchhcCCccCCeecccccceEEEEccCCCcccCCCeEEEEECCH-----HHHHHHHHHHHHhCCCCc
Confidence            999999999999999987776533211111224566666779998899999999874     35  4444321110    


Q ss_pred             -------CCCCC---CcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCC-----CCCeeEEec
Q 013217          265 -------GLQGG---PHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGG-----SDNHLVLVD  328 (447)
Q Consensus       265 -------~~~g~---p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-----~~~~~~~v~  328 (447)
                             ...|+   ++....+++..++     ..+++..+++.++++++.+.|.+. |+.+....     ...+++++.
T Consensus       222 ~~~~~~~~~~g~~~~~~~~~~a~~~~~~-----~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (388)
T 1b9h_A          222 DDRRYFHKIAGSNMRLNEFSASVLRAQL-----ARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFR  296 (388)
T ss_dssp             TCSSCCCCSCCCBCBCBHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEE
T ss_pred             cCccceeecccccCCcCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEE
Confidence                   01122   3333332222221     235667788888999999999884 88776421     224566777


Q ss_pred             CCCCC-CCHHHHHHHHhhcCeEEccCCCCCCCCC------------------C------CCCeEEEecCccc-cCCCCHH
Q 013217          329 LRPMG-IDGARVEKILDMASITLNKNSVPGDKSA------------------L------VPGGIRIGSPAMT-TRGFSEK  382 (447)
Q Consensus       329 ~~~~~-~~~~~~~~~L~~~gI~v~~~~~p~~~~~------------------~------~~~~iRig~~~~~-~~g~~~~  382 (447)
                      +.... .+..++.+.|.++||.++.++.|.+..+                  +      ..+.||++++..+ |    ++
T Consensus       297 ~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t----~e  372 (388)
T 1b9h_A          297 IPGLTEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAG----EP  372 (388)
T ss_dssp             CTTCCHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSC----HH
T ss_pred             eCCcCcccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCC----HH
Confidence            75321 2456788889889999986543321100                  0      0135999988777 7    99


Q ss_pred             HHHHHHHHHHHHHH
Q 013217          383 EFVAIADFIHEGVE  396 (447)
Q Consensus       383 di~~l~~~i~~~l~  396 (447)
                      ||+++++.|+++++
T Consensus       373 di~~~~~~l~~~~~  386 (388)
T 1b9h_A          373 ELHATAEIIADAVA  386 (388)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998775

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.95  E-value=6.1e-28  Score=235.92  Aligned_cols=338  Identities=12%  Similarity=0.039  Sum_probs=215.5

Q ss_pred             CeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCC---cccCchhHHHHHHHHHHHHHHHHcCCCCC-ccceeeecCCcHH
Q 013217           22 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGK---RYYGGNEYIDELETLCQKRALAAFNLDEN-KWGVNVQPLSGSP   97 (447)
Q Consensus        22 ~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~---~~~~g~~~~~~le~~~~~~~~~~~g~~~~-~~~~~v~~~sGs~   97 (447)
                      ...+.|+...+|++|+++|..++.+.+  |+|.+   -++.+.++.+.++ .+++.+++++|++.+ ++  .+.+.+||+
T Consensus        28 ~yl~~agpt~~p~~V~~a~~~~~~~~~--~n~~s~~~~~h~~~~~~~~~~-~ar~~la~ll~~~~~~ev--if~t~~~T~  102 (386)
T 3qm2_A           28 VFNFSSGPAMLPAEVLKLAQQELCDWH--GLGTSVMEISHRGKEFIQVAE-EAEQDFRDLLNIPSNYKV--LFCHGGGRG  102 (386)
T ss_dssp             CEECCSSSCCCCHHHHHHHTCC-------------------------CCH-HHHHHHHHHHTCCTTEEE--EEEESCTTH
T ss_pred             CccccCCCCCCCHHHHHHHHHHHHhcc--ccCccccccCCCCHHHHHHHH-HHHHHHHHHhCCCCCceE--EEEcCCchH
Confidence            456789999999999999998887644  33332   1123444445554 678999999999642 33  122357789


Q ss_pred             HHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC-CCCCC-CCHHHHHHHhhhhCCcEEEE
Q 013217           98 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-ESTGL-VDYDMLEKTAILFRPKLIIA  175 (447)
Q Consensus        98 a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~-id~~~l~~~~~~~~~klii~  175 (447)
                      ++.+++.+++++||+|++....+.++   .+..   .+...| .+..++  ++ ++.+. +|+++++.++++ +|++|.+
T Consensus       103 a~n~ai~~l~~~gd~v~~~~~~~~~~---~~~~---~a~~~G-~v~~v~--~~~~~~G~~~~~~~~~~~l~~-~t~lV~~  172 (386)
T 3qm2_A          103 QFAGVPLNLLGDKTTADYVDAGYWAA---SAIK---EAKKYC-APQIID--AKITVDGKRAVKPMREWQLSD-NAAYLHY  172 (386)
T ss_dssp             HHHHHHHHHCTTCCEEEEEESSHHHH---HHHH---HHTTTS-EEEEEE--CEEEETTEEEECCGGGCCCCT-TCSCEEE
T ss_pred             HHHHHHHhccCCCCeEEEEeCCHHHH---HHHH---HHHHhC-CeEEEe--cCcccCCCCCCchHHHhhcCC-CCcEEEE
Confidence            99999999999999988665444333   2111   112334 344444  43 11343 788888877776 8999888


Q ss_pred             cCCCC--CCC-CChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCc--
Q 013217          176 GASAY--PRD-FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPV--  249 (447)
Q Consensus       176 ~~~~~--~~~-~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~--  249 (447)
                      +...+  +.. .|+++|.     +|+++++|++|++|.++.++..     .|++++|+|||+ ||.| |+++++++..  
T Consensus       173 ~h~et~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~pidv~~-----~~~~~~s~hK~l-GP~G~g~l~v~~~~~~~  241 (386)
T 3qm2_A          173 CPNETIDGIAIDETPDFG-----PEVVVTADFSSTILSAPLDVSR-----YGVIYAGAQKNI-GPAGLTLVIVREDLLGK  241 (386)
T ss_dssp             CSEETTTTEECCCCCCCC-----TTCCEEEECTTTTTSSCCCGGG-----CSEEEEETTTTT-CCTTEEEEEEEGGGCSC
T ss_pred             ECCcCCcCEecCchhhhc-----CCCEEEEEcccccCCCCCCccc-----cCEEEEeccccc-CCCccEEEEECHHHHhh
Confidence            74433  333 6888875     7999999999999977655433     357889999999 7999 9999998521  


Q ss_pred             ---chhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcCh-hHHHHHHHHHHHHHHHHHHHHHCCcEee-eCC-CC-C
Q 013217          250 ---LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVELGYKLV-SGG-SD-N  322 (447)
Q Consensus       250 ---~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~-~~-~  322 (447)
                         ..+.+.+.-.........|||+...+.++..|++.+.+. ++++..++..+.++++.+.|.+.|+... ... .. .
T Consensus       242 ~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~rs~  321 (386)
T 3qm2_A          242 AHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSDFYRNDVAQANRSR  321 (386)
T ss_dssp             CCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCSSEECCBCGGGBCS
T ss_pred             hcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHcCc
Confidence               000010000000112235789999999999999988877 7888899999999999999988776222 111 11 1


Q ss_pred             eeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          323 HLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       323 ~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      ..+.+.+...+++ ..+...|.++||.+..+    +..   .+++|+|+..++|    ++|+++++++|+++.+.
T Consensus       322 ~iv~f~~~~~~~~-~~~~~~L~~~gI~~~~g----~~~---~~~iRiS~~~~~t----~edId~l~~~l~~~~~~  384 (386)
T 3qm2_A          322 MNVPFQLADNTLD-KVFLEESFAAGLHALKG----HRV---VGGMRASIYNAMP----IEGVKALTDFMIDFERR  384 (386)
T ss_dssp             SEEEEEESSGGGH-HHHHHHHHHTTEECCBC----CTT---TCSEEEECCTTSC----HHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCcccc-HHHHHHHHHCCCEEeCC----CCC---cCeEEEEcCCCCC----HHHHHHHHHHHHHHHHh
Confidence            2334444432344 56666788999997542    211   2469999988888    99999999999987653

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.6e-26  Score=235.32  Aligned_cols=328  Identities=14%  Similarity=0.112  Sum_probs=228.3

Q ss_pred             CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC-CCccceeeecCCcHHHHHHHHHHhcC---
Q 013217           33 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVYTAILK---  108 (447)
Q Consensus        33 ~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~-~~~~~~~v~~~sGs~a~~~~~~al~~---  108 (447)
                      ++.+.+++.+.+.. +...++..  +...+...++|+.+++++++++|++ ....  .+.+++|++|+..++.++.+   
T Consensus        77 ~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~l~~~~~~~la~~~g~~~~~~~--~~~~~ggt~a~~~a~~a~~~~~~  151 (497)
T 3mc6_A           77 GDDLIHLQTIAYEK-YCVANQLH--PDVFPAVRKMESEVVSMVLRMFNAPSDTGC--GTTTSGGTESLLLACLSAKMYAL  151 (497)
T ss_dssp             CHHHHHHHHHHHHH-TSSCBTTC--TTTCHHHHHHHHHHHHHHHHHTTCCTTTCC--EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHH-HhhcCCCC--cccChHHHHHHHHHHHHHHHHhCCCCCCCe--EEEcCcHHHHHHHHHHHHHHHHH
Confidence            35666666555443 11111111  2233446678888889999999998 2222  24446667999999988864   


Q ss_pred             --CC---CEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC-
Q 013217          109 --PH---DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR-  182 (447)
Q Consensus       109 --pg---d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~-  182 (447)
                        +|   |+|++..+.|.++.        +.+...|.  +++.++++++++.+|+++|++++++ +|++|+++.++|++ 
T Consensus       152 ~~~g~~~~~Vi~~~~~h~~~~--------~~~~~~G~--~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~p~nptG  220 (497)
T 3mc6_A          152 HHRGITEPEIIAPVTAHAGFD--------KAAYYFGM--KLRHVELDPTTYQVDLGKVKKFINK-NTVLLVGSAPNFPHG  220 (497)
T ss_dssp             HHSCCSSCEEEEETTSCHHHH--------HHHHHSCC--EEEEECBCTTTCSBCTTTTGGGCCS-SEEEEEEETTCTTTC
T ss_pred             hcCCCCCceEEEeCCccHHHH--------HHHHHcCC--eEEEEecCcccCcCCHHHHHHHHhh-CCEEEEEECCCCCCC
Confidence              56   89999998876643        23445565  4555556644688999999999987 89999998777654 


Q ss_pred             -CCChHHHHHHHHHhCCEEEEehhhhccccc----cccCCC-C----CCcccEEEeCCCcccCCCCC-ceEEeecCCcch
Q 013217          183 -DFDYPRMRQIADAVGALLMMDMAHISGLVA----ASVVAD-P----FKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLG  251 (447)
Q Consensus       183 -~~~~~~i~~ia~~~g~~livD~a~~~g~~~----~~~~~~-~----~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~  251 (447)
                       ..|+++|+++|+++|+++++|++|+.+...    .+.... +    ..++|++++|+||++.||.+ |++++++     
T Consensus       221 ~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~-----  295 (497)
T 3mc6_A          221 IADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRN-----  295 (497)
T ss_dssp             CCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSS-----
T ss_pred             cCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCceeEEecC-----
Confidence             779999999999999999999998654332    111101 1    12689999999999877666 9999887     


Q ss_pred             hhHHHHhhhccCC----------CCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC--CcEeeeCC
Q 013217          252 VELESAINNAVFP----------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVSGG  319 (447)
Q Consensus       252 ~~~~~~i~~~~~~----------~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~  319 (447)
                       +..........+          ...|+.....+++++++++.+...+++++.+++.++++++++.|.+.  |++++.+.
T Consensus       296 -~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~  374 (497)
T 3mc6_A          296 -SDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNP  374 (497)
T ss_dssp             -HHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCC
T ss_pred             -HHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence             333332211111          12334445557778888887777778899999999999999999984  89887543


Q ss_pred             CCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          320 SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       320 ~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      . ..++.+.  ..+.+..++.+.|.++||.++....        +.++|++++ .++    ++|++++++.|++++...
T Consensus       375 ~-~~~v~~~--~~~~~~~~l~~~L~~~Gi~v~~~~~--------~~~~ri~~~-~~t----~e~i~~~~~~L~~~l~~~  437 (497)
T 3mc6_A          375 R-YSVISFS--SKTLNIHELSDRLSKKGWHFNALQK--------PVALHMAFT-RLS----AHVVDEICDILRTTVQEL  437 (497)
T ss_dssp             C-SSEEEEE--CTTTTHHHHHHHHHTTTCBCEECCS--------SCCEEEECC-TTT----TCTHHHHHHHHHHHHHHH
T ss_pred             C-eeEEEEe--CCCCCHHHHHHHHHhCCEEEecCCC--------CCeEEEEEe-CCC----HHHHHHHHHHHHHHHHHH
Confidence            2 2333343  3356788999999999998864321        236899877 444    899999999999998765

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=99.95  E-value=2.5e-26  Score=227.51  Aligned_cols=337  Identities=14%  Similarity=0.061  Sum_probs=225.4

Q ss_pred             CeeEec-CCC--CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCC---CccceeeecCCc
Q 013217           22 SLELIA-SEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE---NKWGVNVQPLSG   95 (447)
Q Consensus        22 ~i~l~~-~~n--~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~---~~~~~~v~~~sG   95 (447)
                      .|+|.. +.+  ..++.|++++...+.+....+|+...  +    ...+.+.+.+++++++|.+.   +.+   +.+++|
T Consensus        41 ~id~~~g~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~--g----~~~l~~~l~~~l~~~~g~~~~~~~~i---~~~~g~  111 (407)
T 3nra_A           41 PVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYR--G----DLGIRDLLAPRLAAFTGAPVDARDGL---IITPGT  111 (407)
T ss_dssp             CEETTSCCTTTSCCCTTHHHHHHHHHHHTHHHHSCCTT--C----CHHHHHHHHHHHHHHHTSCCCTTTSE---EEESHH
T ss_pred             eeeecCcCCCCCCCcHHHHHHHHHHHhcCCCCCcCCCC--C----CHHHHHHHHHHHHHHhCCCCCCCCcE---EEeCCc
Confidence            466643 223  35789999998877642111232221  1    23444455678889999852   322   223444


Q ss_pred             HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC-----CCCCCCCHHHHHHHhhhhCC
Q 013217           96 SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-----ESTGLVDYDMLEKTAILFRP  170 (447)
Q Consensus        96 s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~id~~~l~~~~~~~~~  170 (447)
                      ++|+..++.+++++||+|++..+.|.++..        .+...|.  +++.++++     ++++.+|++++++++++ ++
T Consensus       112 ~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~  180 (407)
T 3nra_A          112 QGALFLAVAATVARGDKVAIVQPDYFANRK--------LVEFFEG--EMVPVQLDYVSADETRAGLDLTGLEEAFKA-GA  180 (407)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEEESCCTHHHH--------HHHHTTC--EEEEEEBCCCSSCCSSCCBCHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHhCCCCCEEEEcCCcccchHH--------HHHHcCC--EEEEeecccccccCcCCCcCHHHHHHHHhh-CC
Confidence            599999999999999999999998876531        2334554  44455552     25678999999999987 89


Q ss_pred             cEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC-------CcccEEEeCCCcccC--C
Q 013217          171 KLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-------KYCDVVTTTTHKSLR--G  236 (447)
Q Consensus       171 klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~-------~~~Di~~~s~~K~l~--G  236 (447)
                      ++|+++.++||+  ..+   +++|.++|++||+++++|++|..+. ..+....++       ...++++.|+||+++  |
T Consensus       181 ~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~-~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G  259 (407)
T 3nra_A          181 RVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLR-YAGASYTHLRAEAAVDAENVVTIMGPSKTESLSG  259 (407)
T ss_dssp             CEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSB-CTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGG
T ss_pred             cEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccc-cCCCCCCChhhcCcccCCcEEEEeCcccccCCCe
Confidence            999888777775  666   8999999999999999999986433 222111111       135689999999974  6


Q ss_pred             CCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEe
Q 013217          237 PRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKL  315 (447)
Q Consensus       237 p~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  315 (447)
                      .|.|++++++      ++.+.+.........+ ++....+++..+++. ....+++..+++.++++.+.+.|++. |+.+
T Consensus       260 ~r~G~~~~~~------~~~~~l~~~~~~~~~~-~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  331 (407)
T 3nra_A          260 YRLGVAFGSR------AIIARMEKLQAIVSLR-AAGYSQAVLRGWFDE-APGWMEDRIARHQAIRDELLHVLRGCEGVFA  331 (407)
T ss_dssp             GCCEEEEECH------HHHHHHHHHHHHHTSS-SCHHHHGGGGGTTCC-CTTHHHHHHHHHHHHHHHHHHHHHTSTTCBC
T ss_pred             eeEEEEEcCH------HHHHHHHHHHhhhccC-CChHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHhcCCCcee
Confidence            6779999877      6776665432222222 233333333333321 12345777888899999999999885 7877


Q ss_pred             eeCCCCCeeEEecCCCCCCCHHHHHHHHh-hcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          316 VSGGSDNHLVLVDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       316 ~~~~~~~~~~~v~~~~~~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                      ..+ ...+++|+++...+.+..++.+.|. ++||.+..+..++   +...+.+|++++.  +    +++++++++.|.++
T Consensus       332 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~---~~~~~~iRis~~~--~----~~~i~~~~~~l~~~  401 (407)
T 3nra_A          332 RTP-QAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFS---PHTADSVRLNFSQ--D----HEAAVAAARRIVTL  401 (407)
T ss_dssp             CCC-SBSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTC---TTCTTBEEEECCS--C----HHHHHHHHHHHHHH
T ss_pred             ccC-CeeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhC---CCCCCEEEEEeCC--C----HHHHHHHHHHHHHH
Confidence            543 3345667777654567788888774 5799997643332   2235689999763  4    89999999999988


Q ss_pred             HHH
Q 013217          395 VEI  397 (447)
Q Consensus       395 l~~  397 (447)
                      ++.
T Consensus       402 ~~~  404 (407)
T 3nra_A          402 VER  404 (407)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.95  E-value=8.2e-27  Score=228.31  Aligned_cols=326  Identities=14%  Similarity=0.080  Sum_probs=214.4

Q ss_pred             CCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh-
Q 013217           28 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-  106 (447)
Q Consensus        28 ~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al-  106 (447)
                      +.+++|+.+++++.+.+.+.+  .+|       .+...++    ++.+++++|.+.     .+.+++|++|+..++.++ 
T Consensus         7 ~~~~~~~~v~~a~~~~~~~~~--~~~-------~~~~~~l----~~~la~~~~~~~-----v~~~~ggt~al~~~~~~~~   68 (375)
T 2fnu_A            7 SEPCLDKEDKKAVLEVLNSKQ--LTQ-------GKRSLLF----EEALCEFLGVKH-----ALVFNSATSALLTLYRNFS   68 (375)
T ss_dssp             CCCCCCHHHHHHHHHHHTSSC--CSS-------SHHHHHH----HHHHHHHHTCSE-----EEEESCHHHHHHHHHHHSS
T ss_pred             CCCCCCHHHHHHHHHHHHcCc--ccC-------ChHHHHH----HHHHHHHhCCCe-----EEEeCCHHHHHHHHHHHhc
Confidence            567889999999998876532  122       1223344    468889999872     244567779999999999 


Q ss_pred             --cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCCCC
Q 013217          107 --LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF  184 (447)
Q Consensus       107 --~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~~~  184 (447)
                        ++|||+|+++++.|.++..        .+...|.  +++.++++++ +.+|++++++++++ ++++|+++.+ ++...
T Consensus        69 ~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~-~~~d~~~l~~~i~~-~~~~v~~~~~-tG~~~  135 (375)
T 2fnu_A           69 EFSADRNEIITTPISFVATAN--------MLLESGY--TPVFAGIKND-GNIDELALEKLINE-RTKAIVSVDY-AGKSV  135 (375)
T ss_dssp             CCCTTSCEEEECSSSCTHHHH--------HHHHTTC--EEEECCBCTT-SSBCGGGSGGGCCT-TEEEEEEECG-GGCCC
T ss_pred             ccCCCCCEEEECCCccHhHHH--------HHHHCCC--EEEEeccCCC-CCCCHHHHHhhcCc-CceEEEEeCC-cCCcc
Confidence              8999999999998877542        2233443  6666667644 47999999998876 7898777755 44578


Q ss_pred             ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCceEEe-ecCCcchhhHHHHhhhccC
Q 013217          185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF-KKDPVLGVELESAINNAVF  263 (447)
Q Consensus       185 ~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG~i~~-~~~~~~~~~~~~~i~~~~~  263 (447)
                      |+++|.++|+++|+++++|++|+.|....+.....++.+++.++|.||++ |+..|++++ +++     ++.+++.....
T Consensus       136 ~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~~~i~~~s~s~~K~~-~~g~g~~~~~~~~-----~~~~~~~~~~~  209 (375)
T 2fnu_A          136 EVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPI-TTAEGGAVVTNDS-----ELHEKMKLFRS  209 (375)
T ss_dssp             CHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSS-CCSSCEEEEESCH-----HHHHHHHHHTB
T ss_pred             CHHHHHHHHHHcCCEEEEECccccCCeECCeeccccCCeEEEeCCCCCCc-cccCceEEEeCCH-----HHHHHHHHHHh
Confidence            99999999999999999999998775543211111112444455666998 552377766 432     56665554321


Q ss_pred             CCC------------CCCC-cHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeC--C--CCCeeE
Q 013217          264 PGL------------QGGP-HNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSG--G--SDNHLV  325 (447)
Q Consensus       264 ~~~------------~g~p-~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~--~--~~~~~~  325 (447)
                      .+.            .+.+ ....+++ +.++..  ..++++..++..++++++.+.|.+. |+++..+  +  ...+++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~  286 (375)
T 2fnu_A          210 HGMLKKDFFEGEVKSIGHNFRLNEIQS-ALGLSQ--LKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLY  286 (375)
T ss_dssp             TTEEESSSSCEEESSCCCBCCCCHHHH-HHHHHH--HTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCE
T ss_pred             cCCccccccccccccccccCCCCHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEE
Confidence            111            1111 1112211 112222  2356778889999999999999884 7877653  1  122444


Q ss_pred             EecCCCCCC-CHHHHHHHHhhcCeEEccCCCCCCCC-C---------C------CCCeEEEecCccccCCCCHHHHHHHH
Q 013217          326 LVDLRPMGI-DGARVEKILDMASITLNKNSVPGDKS-A---------L------VPGGIRIGSPAMTTRGFSEKEFVAIA  388 (447)
Q Consensus       326 ~v~~~~~~~-~~~~~~~~L~~~gI~v~~~~~p~~~~-~---------~------~~~~iRig~~~~~~~g~~~~di~~l~  388 (447)
                      ++.+...+. +..++.+.|.++||.++..+.|++.. .         .      ..+.+|++++..++    ++|+++++
T Consensus       287 ~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t----~~~i~~~~  362 (375)
T 2fnu_A          287 PILMHQKFFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLN----LESVQNIA  362 (375)
T ss_dssp             EEEECGGGGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCC----HHHHHHHH
T ss_pred             EEEeCccccchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCC----HHHHHHHH
Confidence            666643333 56788899999999998433332210 0         0      01579999887777    99999999


Q ss_pred             HHHHHHHHH
Q 013217          389 DFIHEGVEI  397 (447)
Q Consensus       389 ~~i~~~l~~  397 (447)
                      ++|+++++.
T Consensus       363 ~~l~~~~~~  371 (375)
T 2fnu_A          363 HSVLKTFES  371 (375)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=99.95  E-value=4e-26  Score=225.52  Aligned_cols=339  Identities=14%  Similarity=0.132  Sum_probs=229.8

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC--CCCCccceeeecCCc
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLSG   95 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g--~~~~~~~~~v~~~sG   95 (447)
                      +..++|..+++.  .++.+.+++.+.+.+. ..+|+..        ..++++...+++++.+|  ++++.    |.+++|
T Consensus        31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~--------~~~l~~~la~~l~~~~g~~~~~~~----v~~t~g   97 (399)
T 1c7n_A           31 NEVVPLSVADMEFKNPPELIEGLKKYLDET-VLGYTGP--------TEEYKKTVKKWMKDRHQWDIQTDW----IINTAG   97 (399)
T ss_dssp             TTCCCCCSSSCSSCCCHHHHHHHHHHHHHC-CCSSBCC--------CHHHHHHHHHHHHHHHCCCCCGGG----EEEESS
T ss_pred             CCceeeeecCCCCCCCHHHHHHHHHHHhcC-CCCCCCC--------cHHHHHHHHHHHHHHhCCCCChhh----EEEcCC
Confidence            356788777763  4789999998877542 1233221        34566555667777778  44442    333555


Q ss_pred             -HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC--CCCCCHHHHHHHhhhhCCcE
Q 013217           96 -SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES--TGLVDYDMLEKTAILFRPKL  172 (447)
Q Consensus        96 -s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~id~~~l~~~~~~~~~kl  172 (447)
                       ++|+..++.++++|||+|++..|.|.++..        .+...|.  +++.++++++  ++.+|+++|+++++..+|++
T Consensus        98 ~~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~  167 (399)
T 1c7n_A           98 VVPAVFNAVREFTKPGDGVIIITPVYYPFFM--------AIKNQER--KIIECELLEKDGYYTIDFQKLEKLSKDKNNKA  167 (399)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEECSSCCTHHHH--------HHHTTTC--EEEECCCEEETTEEECCHHHHHHHHTCTTEEE
T ss_pred             HHHHHHHHHHHhcCCCCEEEEcCCCcHhHHH--------HHHHcCC--EEEecccccCCCCEEEcHHHHHHHhccCCCcE
Confidence             589999999999999999999988876532        2233454  5555555422  24699999999997448899


Q ss_pred             EEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-------cccEEEeCCCccc--CCCC
Q 013217          173 IIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-------YCDVVTTTTHKSL--RGPR  238 (447)
Q Consensus       173 ii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-------~~Di~~~s~~K~l--~Gp~  238 (447)
                      |+++.++||+  ..+   +++|.++|+++|+++|+|++|... ...+....++.       ..++++.|+||++  +|.|
T Consensus       168 v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r  246 (399)
T 1c7n_A          168 LLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDL-IMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMG  246 (399)
T ss_dssp             EEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTC-BCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGC
T ss_pred             EEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCCCCcccHHHcCccccCcEEEEEeChhhccccchh
Confidence            9988778875  666   899999999999999999998543 32221111221       2358899999987  4667


Q ss_pred             CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-C-CcEee
Q 013217          239 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-L-GYKLV  316 (447)
Q Consensus       239 gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~  316 (447)
                      .|+++++++     ++.+.+.....+...++++....+++..+++.. ...+++..+++.++++.+.+.|++ . |+++.
T Consensus       247 ~G~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  320 (399)
T 1c7n_A          247 MSNIIIKNP-----DIRERFTKSRDATSGMPFTTLGYKACEICYKEC-GKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAP  320 (399)
T ss_dssp             CEEEECCCH-----HHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCC
T ss_pred             eEEEEECCH-----HHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEe
Confidence            799999752     577766554333323455666555555566643 234567778888999999999987 4 78765


Q ss_pred             eCCCCCeeEEecCCCCCCCHHHHHHHHh-hcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          317 SGGSDNHLVLVDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       317 ~~~~~~~~~~v~~~~~~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      .+ ..+.+.|+++...+.+..++.+.|. ++||.+..+...+   +..++.+|++++.  .    +++++++++.|.+++
T Consensus       321 ~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~---~~~~~~iRis~~~--~----~~~l~~~l~~l~~~l  390 (399)
T 1c7n_A          321 LI-EGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFG---DGGIGFERINLAA--P----SSVIQESLERLNKAL  390 (399)
T ss_dssp             CC-SBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGC---GGGTTEEEEECCS--C----HHHHHHHHHHHHHHH
T ss_pred             cC-CceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCccccC---CCCCCeEEEEecc--C----HHHHHHHHHHHHHHH
Confidence            43 3455567777543456778888885 7899986542221   1124689999763  2    688999999998887


Q ss_pred             HHH
Q 013217          396 EIT  398 (447)
Q Consensus       396 ~~~  398 (447)
                      +..
T Consensus       391 ~~~  393 (399)
T 1c7n_A          391 KDL  393 (399)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            643

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=99.95  E-value=8.3e-26  Score=226.01  Aligned_cols=339  Identities=15%  Similarity=0.132  Sum_probs=231.7

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCc
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSG   95 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sG   95 (447)
                      +..|+|..+++.  .++.+++++...+.+....+|+..      ....++++...+++.+.+|.+  ++.    |.+++|
T Consensus        44 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~------~g~~~lr~~la~~~~~~~g~~~~~~~----i~~t~g  113 (437)
T 3g0t_A           44 TKFCRMEMGVPGLPAPQIGIETEIQKLREGVASIYPNL------DGLPELKQEASRFAKLFVNIDIPARA----CVPTVG  113 (437)
T ss_dssp             CCCEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSCCCT------TCCHHHHHHHHHHHHHHHCCCCCGGG----EEEESH
T ss_pred             CCEEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCCCCC------CChHHHHHHHHHHHHHhhCCCCCccc----EEEeCC
Confidence            467888888775  479999999888764322344432      112355555556666666654  332    333555


Q ss_pred             H-HHHHHHHHHhc--CCCC--EEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCC
Q 013217           96 S-PANFEVYTAIL--KPHD--RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRP  170 (447)
Q Consensus        96 s-~a~~~~~~al~--~pgd--~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~  170 (447)
                      + +++..++.+++  +|||  +|++..+.|.++..        .+...|.  +++.++++++++.+|+++|+++++..++
T Consensus       114 ~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~l~~~~~  183 (437)
T 3g0t_A          114 SMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKL--------QCRILGQ--KFESFDLFEYRGEKLREKLESYLQTGQF  183 (437)
T ss_dssp             HHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHH--------HHHHHTC--CCEEEEGGGGCTTHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHH--------HHHHcCC--EEEEEeecCCCCccCHHHHHHHHhcCCc
Confidence            5 89999999998  9999  99999988766531        2334454  4444445545667999999999944489


Q ss_pred             cEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCC--------CC---CcccEEEeCCCccc
Q 013217          171 KLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVAD--------PF---KYCDVVTTTTHKSL  234 (447)
Q Consensus       171 klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~--------~~---~~~Di~~~s~~K~l  234 (447)
                      ++|+++.++||+  ..+   +++|+++|+++|+++++|++|+.+ ...+..+.        .+   ...+++++|+||++
T Consensus       184 ~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  262 (437)
T 3g0t_A          184 CSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGM-DFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAF  262 (437)
T ss_dssp             CEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTC-CTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTT
T ss_pred             eEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhc-ccCCCcCcccccchhhccCCCCCcEEEEEcCccCC
Confidence            999888777775  555   678899999999999999998533 22221111        11   13568999999986


Q ss_pred             --CCCCCceEEeecCCcchhhHHH-H-----------------hhhccCCCCCCCCcHHHHHHHHHHHHHhcC--hhHHH
Q 013217          235 --RGPRGGMIFFKKDPVLGVELES-A-----------------INNAVFPGLQGGPHNHTIGGLAVCLKHAQS--PEFKV  292 (447)
Q Consensus       235 --~Gp~gG~i~~~~~~~~~~~~~~-~-----------------i~~~~~~~~~g~p~~~~~aal~~al~~~~~--~~~~~  292 (447)
                        +|.|.|++++++      ++.+ .                 +...... ...+++....+++..+++....  ..+++
T Consensus       263 ~~~G~r~G~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~  335 (437)
T 3g0t_A          263 SYAGQRIGVLMISG------KLYEREYPDLEESFGRLRFGEALSSSALYA-LSSGATHSAQWGMAAMLKACNDGEYNFRD  335 (437)
T ss_dssp             SCGGGCCEEEEECH------HHHHCBCGGGHHHHSCSBHHHHHHTTHHHH-HHSSSCHHHHHHHHHHHHHHHTTSCCHHH
T ss_pred             CCccceeEEEEECH------HHhhhhhhcccccccccchhHHHHHHHHhh-hcCCCCHHHHHHHHHHHhCcHhHHHHHHH
Confidence              466779999987      6666 5                 4332111 1234455555666666665431  11677


Q ss_pred             HHHHHHHHHHHHHHHHHHCCcEee------eCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCe
Q 013217          293 YQNKVVSNCRALASRLVELGYKLV------SGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGG  366 (447)
Q Consensus       293 ~~~~~~~~~~~l~~~L~~~g~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~  366 (447)
                      ..+++.++++.+.+.|.+.|+++.      .+....+++|+++.  +.+..++.+.|.++||.+.....++.   ..++.
T Consensus       336 ~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~gi~v~~~~~~~~---~~~~~  410 (437)
T 3g0t_A          336 SVIEYGRKARIMKKMFLDNGFNIVYDKDGNEPLADGFYFTVGYK--GMDSSKLIEKFVRYGMCAITLKTTGS---KRNEA  410 (437)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTEEESSCEETTEECCSSSEEEEEET--TCCHHHHHHHHHHTTEECEESTTTTC---CCTTC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCEEeccccCCCCCceeEEEEEecC--CCCHHHHHHHHHHcCeEEeeccccCC---CCCCE
Confidence            889999999999999998898887      23134566777775  56788999999889999975432221   12367


Q ss_pred             EEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          367 IRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       367 iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      +|++++.. +    ++|++++++.|+++++
T Consensus       411 iRis~~~~-~----~e~i~~~~~~l~~~~~  435 (437)
T 3g0t_A          411 MRICTSLL-P----ESQFPDLEKRLQMLNA  435 (437)
T ss_dssp             EEEECSSS-C----GGGHHHHHHHHHHHHH
T ss_pred             EEEEEecC-C----HHHHHHHHHHHHHHHh
Confidence            99998744 4    8999999999988765

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=99.95  E-value=4.9e-26  Score=223.17  Aligned_cols=334  Identities=15%  Similarity=0.118  Sum_probs=223.4

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCc
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSG   95 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sG   95 (447)
                      +..|+|..+++.  .++.+.+++.+.+.+....+|      +......++++...+++.+.+|.+  ++.   +|.+++|
T Consensus        25 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~y------~~~~~~~~l~~~ia~~~~~~~g~~~~~~~---~v~~~~g   95 (376)
T 2dou_A           25 VGLIDLSIGSTDLPPPEAPLKALAEALNDPTTYGY------CLKSCTLPFLEEAARWYEGRYGVGLDPRR---EALALIG   95 (376)
T ss_dssp             CCCEECSSCCCCCCCCHHHHHHHHHHTTCGGGSSC------CCHHHHHHHHHHHHHHHHHHHSCCCCTTT---SEEEESS
T ss_pred             CCEEeccCCCCCCCCCHHHHHHHHHHHhCCCcCCC------CCCCCCHHHHHHHHHHHHHHhCCCCCCCc---cEEEcCC
Confidence            456888877775  479999999887754211223      222334566655556666667886  221   2233565


Q ss_pred             -HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEE
Q 013217           96 -SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII  174 (447)
Q Consensus        96 -s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii  174 (447)
                       ++++..++.++++|||+|++..|.|.++..        .+...|.  +++.+++ ++++.+|++++++++++ +|++|+
T Consensus        96 ~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~--------~~~~~g~--~~~~~~~-~~~~~~d~~~l~~~l~~-~~~~v~  163 (376)
T 2dou_A           96 SQEGLAHLLLALTEPEDLLLLPEVAYPSYFG--------AARVASL--RTFLIPL-REDGLADLKAVPEGVWR-EAKVLL  163 (376)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEESSCCHHHHH--------HHHHTTC--EEEEECB-CTTSSBCGGGSCHHHHH-HEEEEE
T ss_pred             cHHHHHHHHHHhcCCCCEEEECCCCcHhHHH--------HHHHcCC--EEEEeeC-CCCCCCCHHHHHHhhcc-CceEEE
Confidence             589999999999999999999988766531        2234454  4455555 35567999999998875 799999


Q ss_pred             EcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC---C--cccEEEeCCCccc--CCCCCceE
Q 013217          175 AGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K--YCDVVTTTTHKSL--RGPRGGMI  242 (447)
Q Consensus       175 ~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~---~--~~Di~~~s~~K~l--~Gp~gG~i  242 (447)
                      ++.++||+  ..+   +++|.++|+++|+++|+|++|..+ ...+.....+   +  ..+++++|+||++  +|.|.|++
T Consensus       164 l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~  242 (376)
T 2dou_A          164 LNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQ-VYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFA  242 (376)
T ss_dssp             ECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGG-BSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEE
T ss_pred             ECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhc-ccCCCCCChhhcCCCCCcEEEEecchhhcCChhheeEEE
Confidence            98777775  444   678999999999999999998543 3222111111   1  3568899999997  46778999


Q ss_pred             EeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCC
Q 013217          243 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDN  322 (447)
Q Consensus       243 ~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~  322 (447)
                      ++++      ++.+.+......... +++....+++..+++.. ...+++..+++.++++.+.+.|.+. +++..+ ..+
T Consensus       243 ~~~~------~~~~~l~~~~~~~~~-~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~-~~~  312 (376)
T 2dou_A          243 LGSE------EALARLERVKGVIDF-NQYAGVLRMGVEALKTP-KEVVRGYARVYRERALGMAEALKGV-LSLLPP-RAT  312 (376)
T ss_dssp             EECH------HHHHHHHHHHHHHCC-CSCHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHHHHHTTT-SEECCC-CBS
T ss_pred             ecCH------HHHHHHHHHHHhccc-CCCHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHh-cCccCC-Cee
Confidence            9887      677766543222212 33444455555555432 2335677788888999999999887 666543 235


Q ss_pred             eeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          323 HLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       323 ~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      +++|+++.. +.+..++.+.|.++||.+..+..++.   ...+.+|++++.  +    +++++++++.|++++
T Consensus       313 ~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~g~~f~~---~~~~~~Ris~~~--~----~~~i~~~l~~l~~~l  375 (376)
T 2dou_A          313 MYLWGRLPE-GVDDLEFGLRLVERGVALAPGRGFGP---GGKGFVRIALVR--P----LEELLEAAKRIREAL  375 (376)
T ss_dssp             SEEEEECCT-TCCHHHHHHHHHHTTEECEEGGGGCG---GGTTEEEEECCS--C----HHHHHHHHHHHHHTC
T ss_pred             EEEEEECCC-CCCHHHHHHHHHHCCEEEcCchhhCC---CCCCeEEEEecC--C----HHHHHHHHHHHHHHh
Confidence            567777753 45677888888878999965422211   124689999763  3    889999998887654

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.95  E-value=1.8e-26  Score=228.24  Aligned_cols=281  Identities=17%  Similarity=0.127  Sum_probs=198.6

Q ss_pred             CCHHHH---HHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccC----CCCCCCCcccCchhHHHHHHHHHHHHHH
Q 013217            4 CNPEVC---EIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKY----SEGLPGKRYYGGNEYIDELETLCQKRAL   76 (447)
Q Consensus         4 ~~~~~~---~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~----~~g~~~~~~~~g~~~~~~le~~~~~~~~   76 (447)
                      .|+++.   +.+.+|.++|...+++++++|.  +.|++++.+......    .+||+..++     ..+.+|    ++++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~n~--~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~-----g~~~Le----~~lA   84 (427)
T 3hvy_A           16 INERVLELYERALNDVEKEFKYYDEIREYNQ--LKVLKAFQEERISESHFTNSSGYGYNDI-----GRDSLD----RVYA   84 (427)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHTTCCGGGSCCCCTTCTTCH-----HHHHHH----HHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHhcccCcCCCCCch-----hHHHHH----HHHH
Confidence            467777   6667888999999999999996  899999988654322    234443332     256666    6889


Q ss_pred             HHcCCCCCccceeee--cCCcHHHHHHHHHHhcCCCCEEEEec-CCCCcccCC--Ccccc-ccccccccceeEEEecccC
Q 013217           77 AAFNLDENKWGVNVQ--PLSGSPANFEVYTAILKPHDRIMGLD-LPHGGHLSH--GFMTP-KRRVSGTSIYFESMPYRLD  150 (447)
Q Consensus        77 ~~~g~~~~~~~~~v~--~~sGs~a~~~~~~al~~pgd~Vl~~~-~~~~~~~~~--~~~~~-~~~~~~~g~~~~~~~~~~~  150 (447)
                      +++|++.    .+++  ++||++||.+++.++++|||+|++.+ +.|+++...  +.... ...+...|.  +++.++. 
T Consensus        85 ~l~g~e~----alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~--~~~~v~~-  157 (427)
T 3hvy_A           85 NIFNTES----AFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGV--KYKMVDL-  157 (427)
T ss_dssp             HHHTCSE----EEEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTC--EEEECCC-
T ss_pred             HHhCCCc----eEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCC--EEEEecC-
Confidence            9999986    3443  68999999999999999999999998 777665310  00000 011223444  5555545 


Q ss_pred             CCCCCCCHHHHHHHhhh-hCCcEEEEcC----CCCCC--CCChHHHHHHHHH--hCCEEEEehhhhccccccccCCCCCC
Q 013217          151 ESTGLVDYDMLEKTAIL-FRPKLIIAGA----SAYPR--DFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK  221 (447)
Q Consensus       151 ~~~~~id~~~l~~~~~~-~~~klii~~~----~~~~~--~~~~~~i~~ia~~--~g~~livD~a~~~g~~~~~~~~~~~~  221 (447)
                       +++.+|++++++++++ .+||+|+++.    ++|++  ..|+++|+++|++  +|+++++|++|+.+...    ..|+.
T Consensus       158 -~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~~~----~~p~~  232 (427)
T 3hvy_A          158 -KDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEE----KEPTD  232 (427)
T ss_dssp             -BTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTTSS----SCGGG
T ss_pred             -CCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCccccccC----CCCcc
Confidence             4678999999999983 3899999987    66664  5689999999999  89999999998665421    23333


Q ss_pred             -cccEEEeCCCcccCC---CCCceEEeecCCcchhhHHHHhhhc-cCCCCC--CCCcHHHHHHHHHHHHHhcChhHHHHH
Q 013217          222 -YCDVVTTTTHKSLRG---PRGGMIFFKKDPVLGVELESAINNA-VFPGLQ--GGPHNHTIGGLAVCLKHAQSPEFKVYQ  294 (447)
Q Consensus       222 -~~Di~~~s~~K~l~G---p~gG~i~~~~~~~~~~~~~~~i~~~-~~~~~~--g~p~~~~~aal~~al~~~~~~~~~~~~  294 (447)
                       ++|++++|+||+++|   ++||++++++      ++.+++... ..++..  .++....   ...+++.+.  ....++
T Consensus       233 ~gaDiv~~S~sK~lgg~g~~~GG~i~~~~------~li~~l~~~~~~~~~g~~~~~~~~~---a~~~~~gl~--~~~~r~  301 (427)
T 3hvy_A          233 VGADIIAGSLIKNIGGGIATTGGYIAGKE------EYVTQATFRVTVPGIGGECGSTFGV---MRSLYEGLF--MAPHVT  301 (427)
T ss_dssp             GTCSEEEEETTSGGGTTTCCSCEEEEECH------HHHHHHHHHHSCTTTGGGCCCCTTC---HHHHHHHHH--HHHHHH
T ss_pred             cCCeEEEECCcccccccccceEEEEEECH------HHHHHHHHHhhcCCcccccCCCHHH---HHHHHHhHh--HHHHHH
Confidence             589999999999987   7899999987      788877663 233331  2232211   111222221  134678


Q ss_pred             HHHHHHHHHHHHHHHHCCcEeeeC
Q 013217          295 NKVVSNCRALASRLVELGYKLVSG  318 (447)
Q Consensus       295 ~~~~~~~~~l~~~L~~~g~~~~~~  318 (447)
                      ++..+|+..+++.|++.|+++.++
T Consensus       302 ~~~~~~a~~la~~L~~~g~~V~p~  325 (427)
T 3hvy_A          302 IEAVKGAVFCARIMELAGFDVLPK  325 (427)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEESC
T ss_pred             HHHHHHHHHHHHHHHhCCCeecCC
Confidence            899999999999999999988543

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.95  E-value=9.1e-26  Score=221.65  Aligned_cols=331  Identities=16%  Similarity=0.125  Sum_probs=225.7

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHH
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP   97 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~   97 (447)
                      ...|+|..+++.  .++.+.+++...+.+  ...|+..      ....+++    +.++++++++++.+   +.+++|++
T Consensus        25 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~~------~~~~~l~----~~la~~~~~~~~~v---~~~~g~~~   89 (381)
T 1v2d_A           25 LGAVNLGQGFPSNPPPPFLLEAVRRALGR--QDQYAPP------AGLPALR----EALAEEFAVEPESV---VVTSGATE   89 (381)
T ss_dssp             HTCEECCCCSCSSCCCHHHHHHHHHHTTT--SCSCCCT------TCCHHHH----HHHHHHHTSCGGGE---EEESSHHH
T ss_pred             CCeEEecCCCCCCCCCHHHHHHHHHHHHH--hcCCCCC------CCCHHHH----HHHHHhcCCChhhE---EEcCChHH
Confidence            567888777764  478999999887754  2233321      1123444    57778899886542   22345569


Q ss_pred             HHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC--CCCCCCCHHHHHHHhhhhCCcEEEE
Q 013217           98 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD--ESTGLVDYDMLEKTAILFRPKLIIA  175 (447)
Q Consensus        98 a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~id~~~l~~~~~~~~~klii~  175 (447)
                      |+..++.++++|||+|++.++.|.++..        .+...|.  +++.++++  ++++.+|+++|++++++ ++++|++
T Consensus        90 a~~~~~~~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~  158 (381)
T 1v2d_A           90 ALYVLLQSLVGPGDEVVVLEPFFDVYLP--------DAFLAGA--KARLVRLDLTPEGFRLDLSALEKALTP-RTRALLL  158 (381)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECEEETTEEECCHHHHHTTCCT-TEEEEEE
T ss_pred             HHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHcCC--EEEEEeCCCCCccCCcCHHHHHHhcCc-CCEEEEE
Confidence            9999999999999999999998876531        2334454  44555554  34578999999998876 7899998


Q ss_pred             cCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC----CcccEEEeCCCccc--CCCCCceEEe
Q 013217          176 GASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF----KYCDVVTTTTHKSL--RGPRGGMIFF  244 (447)
Q Consensus       176 ~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~----~~~Di~~~s~~K~l--~Gp~gG~i~~  244 (447)
                      +.++||+  ..+   +++|.++|+++|+++++|++|+.+..  +....++    .+.|++++|+||++  +|+|.|++++
T Consensus       159 ~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~--g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~  236 (381)
T 1v2d_A          159 NTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYY--GERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVG  236 (381)
T ss_dssp             ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS--SSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEEC
T ss_pred             CCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCcccccc--CCCCCCHHHhcCCCEEEEeechhhcCCcccceEEEEe
Confidence            8777765  444   78999999999999999999854322  2111111    24789999999987  4667799999


Q ss_pred             ecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCe
Q 013217          245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-SPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNH  323 (447)
Q Consensus       245 ~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~  323 (447)
                      ++      ++.+.+....... ..+++....+++..+++... ..++++..+++.++++++.+.|.+.|+++..+ ..+.
T Consensus       237 ~~------~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~  308 (381)
T 1v2d_A          237 PK------EFMPRLAGMRQWT-SFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVP-EGTY  308 (381)
T ss_dssp             CT------TTHHHHHHHHHHH-TSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEECC-SBSS
T ss_pred             CH------HHHHHHHHHHhhc-ccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHCCCEecCC-Ccce
Confidence            87      5555554322111 12335555555566776542 34567788899999999999999989887654 2345


Q ss_pred             eEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          324 LVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       324 ~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      ++|+++...  +   +.+.|.++||.+..+..++. .+...+.+|++++.  +    +++++++++.|.+++...
T Consensus       309 ~~~~~~~~~--~---~~~~l~~~gi~v~~g~~~~~-~~~~~~~iRi~~~~--~----~~~i~~~~~~l~~~l~~~  371 (381)
T 1v2d_A          309 FLMAELPGW--D---AFRLVEEARVALIPASAFYL-EDPPKDLFRFAFCK--T----EEELHLALERLGRVVNSP  371 (381)
T ss_dssp             EEEEECTTC--C---HHHHHHHTCEECEEGGGGCS-SSCCTTEEEEECCS--C----HHHHHHHHHHHHHHC---
T ss_pred             EEEEecChH--h---HHHHHHhCCEEEecchHhCC-CCCCCCEEEEEeCC--C----HHHHHHHHHHHHHHHhhc
Confidence            667777532  2   77788899999975432221 11234689999764  4    899999999999887654

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.95  E-value=3.2e-26  Score=228.72  Aligned_cols=351  Identities=15%  Similarity=0.144  Sum_probs=217.0

Q ss_pred             cCeeEecCCC-CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCc-HHH
Q 013217           21 KSLELIASEN-FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPA   98 (447)
Q Consensus        21 ~~i~l~~~~n-~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sG-s~a   98 (447)
                      ..+.|..+++ .+|+.|++++...+.+.  .+||...|..+... .......++++++++|+++++    |.+++| ++|
T Consensus        18 ~~~~Ld~~~~~~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~~~la~~~g~~~~~----v~~~~g~t~a   90 (432)
T 3a9z_A           18 RKVYMDYNATTPLEPEVIQAVTEAMKEA--WGNPSSSYVAGRKA-KDIINTARASLAKMIGGKPQD----IIFTSGGTES   90 (432)
T ss_dssp             CCEECBTTTCCCCCHHHHHHHHHHHHHC--CSCTTCSSHHHHHH-HHHHHHHHHHHHHHHTCCGGG----EEEESCHHHH
T ss_pred             CcEEeeCCccCCCCHHHHHHHHHHHHHh--cCCCccCcHHHHHH-HHHHHHHHHHHHHHcCCCcCe----EEEeCChHHH
Confidence            4566655554 57899999999888653  36666544322222 233345678999999997653    233555 699


Q ss_pred             HHHHHHHhc--------CCCCEEEEecCCCCcccCC-----Ccccc----ccccccccceeEEEecccCCCCCCCCHHHH
Q 013217           99 NFEVYTAIL--------KPHDRIMGLDLPHGGHLSH-----GFMTP----KRRVSGTSIYFESMPYRLDESTGLVDYDML  161 (447)
Q Consensus        99 ~~~~~~al~--------~pgd~Vl~~~~~~~~~~~~-----~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~id~~~l  161 (447)
                      +..++.+++        +|||+|++..|.|.++...     .+...    .......|  .+++.++++++++.+|+++|
T Consensus        91 ~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g--~~v~~v~~~~~~~~~d~~~l  168 (432)
T 3a9z_A           91 NNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQV--AEVTFVPVSKVNGQVEVEDI  168 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTS--CEEEEECCCTTTSSCCHHHH
T ss_pred             HHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcC--cEEEEEecCcccCCcCHHHH
Confidence            999988876        5999999988887643100     00000    00001124  35556666644678999999


Q ss_pred             HHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhC----------CEEEEehhhhccccccccCCCCCCcccEEEeC
Q 013217          162 EKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVG----------ALLMMDMAHISGLVAASVVADPFKYCDVVTTT  229 (447)
Q Consensus       162 ~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g----------~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s  229 (447)
                      ++++++ +|++|++++++||+  ..|+++|.++|+++|          +++++|++|+.|....+...   .+.|++++|
T Consensus       169 ~~~i~~-~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~~~~~~---~~~d~~~~s  244 (432)
T 3a9z_A          169 LAAVRP-TTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVED---LGVDFLTIV  244 (432)
T ss_dssp             HHTCCT-TEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSCCCHHH---HCCSEEEEE
T ss_pred             HHhccC-CceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcccChhh---cCCCEEEEe
Confidence            999986 89999998777765  789999999999999          99999999976643211110   047999999


Q ss_pred             CCcccCCCCCceEEeecCCcchhhHHHHhhhccC------CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHH
Q 013217          230 THKSLRGPRGGMIFFKKDPVLGVELESAINNAVF------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRA  303 (447)
Q Consensus       230 ~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~------~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~  303 (447)
                      +||++ ||+.|+++++++     .....+....+      ....++++...++++.++++.+. .++++..+++.+++++
T Consensus       245 ~~K~~-g~~~G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~-~~~~~~~~~~~~~~~~  317 (432)
T 3a9z_A          245 GHKFY-GPRIGALYVRGV-----GKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVS-ENCETYEAHMRDIRDY  317 (432)
T ss_dssp             GGGTT-CCSCEEEEETTB-----TTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred             hhHhc-CCcceEEEEccc-----cccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHH
Confidence            99986 788999999873     11222222111      11235677777777777887654 3567888899999999


Q ss_pred             HHHHHHH-CCcEee--eC--C-C-CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCC--CCCC---------CCCC---
Q 013217          304 LASRLVE-LGYKLV--SG--G-S-DNHLVLVDLRPMGIDGARVEKILDMASITLNKNS--VPGD---------KSAL---  362 (447)
Q Consensus       304 l~~~L~~-~g~~~~--~~--~-~-~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~--~p~~---------~~~~---  362 (447)
                      +.+.|.+ .|+++.  .+  + . ......+.+...+.+..++.+.|  .+|.++.+.  .++.         ....   
T Consensus       318 l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~  395 (432)
T 3a9z_A          318 LEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQC--QTLLASVGASCHSDHEDRPSPVLLSCGIPVD  395 (432)
T ss_dssp             HHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTCCHHHHHHHC--SSEECBSSCGGGGGGTTSCCHHHHHTTCCHH
T ss_pred             HHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCCcHHHHHHHh--cCeEEeccccccCCCCCCccHHHHhcCCCcc
Confidence            9999988 466543  21  0 1 11233344433233455555554  366655431  1110         0000   


Q ss_pred             -CCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          363 -VPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       363 -~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                       ..+.||++++.+++    ++|++++++.|+++++.
T Consensus       396 ~~~~~iRis~~~~~t----~eei~~~~~~l~~~~~~  427 (432)
T 3a9z_A          396 VARNAVRLSVGRSTT----RAEVDLIVQDLKQAVNQ  427 (432)
T ss_dssp             HHTTEEEEECCTTCC----HHHHHHHHHHHHHHHHH
T ss_pred             ccCceEEEEcCCCCC----HHHHHHHHHHHHHHHHH
Confidence             13689999988777    99999999999988764

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.95  E-value=8e-26  Score=224.28  Aligned_cols=338  Identities=17%  Similarity=0.104  Sum_probs=224.3

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCc
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSG   95 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sG   95 (447)
                      +..|+|..+++.  .++.+.+++ ..+.+. ..+|+..      ....++++...+++.+.+|.+  ++.+   +.+++|
T Consensus        43 ~~~i~l~~~~~~~~~~~~v~~a~-~~l~~~-~~~y~~~------~g~~~l~~~la~~~~~~~g~~~~~~~v---~~~~g~  111 (409)
T 2gb3_A           43 VRIHHLNIGQPDLKTPEVFFERI-YENKPE-VVYYSHS------AGIWELREAFASYYKRRQRVDVKPENV---LVTNGG  111 (409)
T ss_dssp             CEEEECSSCCCCSCCCTHHHHHH-HHTCCS-SCCCCCT------TCCHHHHHHHHHHHHHTSCCCCCGGGE---EEESHH
T ss_pred             CCEEeccCCCCCCCCCHHHHHHH-HHHhcC-CCCCCCC------CCcHHHHHHHHHHHHHHhCCCCCHHHE---EEeCCH
Confidence            456788777764  478899999 777542 1233321      223456655566777666644  3322   223445


Q ss_pred             HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhhCCcEEE
Q 013217           96 SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLII  174 (447)
Q Consensus        96 s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~~~klii  174 (447)
                      ++|+..++.++++|||+|++.++.|.++..        .+...|.  +++.+++++ +++.+ +++|++++++ ++++|+
T Consensus       112 t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~-~~~l~~~l~~-~~~~v~  179 (409)
T 2gb3_A          112 SEAILFSFAVIANPGDEILVLEPFYANYNA--------FAKIAGV--KLIPVTRRMEEGFAI-PQNLESFINE-RTKGIV  179 (409)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEEESCCTHHHH--------HHHHHTC--EEEEEECCGGGTSCC-CTTGGGGCCT-TEEEEE
T ss_pred             HHHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHcCC--EEEEeccCCCCCCcc-HHHHHHhhCc-CCeEEE
Confidence            699999999999999999999998876532        2334454  455555553 23445 8889888876 889998


Q ss_pred             EcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCC---CcccEEEeCCCcccC--CCCCceEEe
Q 013217          175 AGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KYCDVVTTTTHKSLR--GPRGGMIFF  244 (447)
Q Consensus       175 ~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~---~~~Di~~~s~~K~l~--Gp~gG~i~~  244 (447)
                      ++.++||+  ..   ++++|.++|+++|+++++|++|+.+. ..+.....+   ...|++++|+||+++  |.|.|++++
T Consensus       180 ~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~  258 (409)
T 2gb3_A          180 LSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIV-FRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLIT  258 (409)
T ss_dssp             EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCB-CSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEEC
T ss_pred             ECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccc-cCCCCCCccccCCCCEEEEecchhccCCccceEEEEEE
Confidence            88777764  33   47999999999999999999986543 222111111   246899999999983  556799999


Q ss_pred             ecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEe-eeCCCCCe
Q 013217          245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKL-VSGGSDNH  323 (447)
Q Consensus       245 ~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~~~~~~  323 (447)
                      +++     ++.+.+......+.  +++....+++..+++.. ...+++..+++.++++.+.+.|++.|+++ ..+ ..+.
T Consensus       259 ~~~-----~l~~~l~~~~~~~~--~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~  329 (409)
T 2gb3_A          259 RNE-----ELISHAMKLAQGRL--APPLLEQIGSVGLLNLD-DSFFDFVRETYRERVETVLKKLEEHGLKRFTKP-SGAF  329 (409)
T ss_dssp             SCH-----HHHHHHHHHHHHSC--CCCHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCC-SBSS
T ss_pred             CcH-----HHHHHHHHHHhccC--CCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHcCceeeeCC-CeeE
Confidence            873     45555544322222  44555555555566432 23456778888899999999998888877 433 3355


Q ss_pred             eEEecCCCCCCCHHHHHHHHhhc------CeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          324 LVLVDLRPMGIDGARVEKILDMA------SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       324 ~~~v~~~~~~~~~~~~~~~L~~~------gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      +.|+++.  +.+..++.+.|.+.      ||.+..+...+...+..++.+|++++  ++    +++++++++.|+++++.
T Consensus       330 ~~~~~~~--~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~--~~----~e~i~~~~~~l~~~l~~  401 (409)
T 2gb3_A          330 YITAELP--VEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV--LE----KDLLSRAIDVLMEGLKM  401 (409)
T ss_dssp             EEEEECS--SSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC--SC----HHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeC--CCCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC--CC----HHHHHHHHHHHHHHHHH
Confidence            6677765  45677888877665      99987542221111123568999976  44    89999999999998875


Q ss_pred             H
Q 013217          398 T  398 (447)
Q Consensus       398 ~  398 (447)
                      .
T Consensus       402 ~  402 (409)
T 2gb3_A          402 F  402 (409)
T ss_dssp             H
T ss_pred             h
Confidence            4

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=99.95  E-value=1.9e-25  Score=219.80  Aligned_cols=348  Identities=12%  Similarity=0.104  Sum_probs=230.3

Q ss_pred             HHHHHHHHHHHHHhhcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC-
Q 013217            6 PEVCEIITKEKERQFKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-   82 (447)
Q Consensus         6 ~~~~~~~~~e~~~~~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~-   82 (447)
                      +.++..+.+ .......|+|..+.+.  .++.+.+++...+.+. ..+|+..      ....++++...+++++.+|.+ 
T Consensus        17 ~~~~~~~~~-~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~------~g~~~l~~~la~~l~~~~g~~~   88 (386)
T 1u08_A           17 TTIFTQMSA-LAQQHQAINLSQGFPDFDGPRYLQERLAHHVAQG-ANQYAPM------TGVQALREAIAQKTERLYGYQP   88 (386)
T ss_dssp             CCHHHHHHH-HHHHTTCEECCCSSCSSCCCHHHHHHHHHHHHTT-CCSCCCT------TCCHHHHHHHHHHHHHHHSCCC
T ss_pred             ccHHHHHHH-HHhcCCeEEecCCCCCCCCCHHHHHHHHHHHHhh-ccCCCCC------CCCHHHHHHHHHHHHHHhCCCC
Confidence            334444433 2233467888777653  5789999998877542 1233322      112456666667777777854 


Q ss_pred             -CC-ccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHH
Q 013217           83 -EN-KWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDM  160 (447)
Q Consensus        83 -~~-~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~  160 (447)
                       ++ .+   +.+++|++|+..++.++++|||+|++.+|.|.++..        .+...|.  +++.++++++++.+|+++
T Consensus        89 ~~~~~v---~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~d~~~  155 (386)
T 1u08_A           89 DADSDI---TVTAGATEALYAAITALVRNGDEVICFDPSYDSYAP--------AIALSGG--IVKRMALQPPHFRVDWQE  155 (386)
T ss_dssp             CTTTTE---EEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECCTTTCCCCHHH
T ss_pred             CCCCCE---EEcCChHHHHHHHHHHhCCCCCEEEEeCCCchhHHH--------HHHHcCC--EEEEeecCcccCcCCHHH
Confidence             43 32   223444599999999999999999999998876531        2334454  555555654457899999


Q ss_pred             HHHHhhhhCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC------CcccEEEeC
Q 013217          161 LEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF------KYCDVVTTT  229 (447)
Q Consensus       161 l~~~~~~~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~------~~~Di~~~s  229 (447)
                      |++++++ ++++|+++.++||+  ..+   +++|.++|+++|+++|+|++|.. +...+....++      ...|++++|
T Consensus       156 l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~~i~~~s  233 (386)
T 1u08_A          156 FAALLSE-RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEH-INFSQQGHASVLAHPQLRERAVAVSS  233 (386)
T ss_dssp             HHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTT-CBCCSSCCCCGGGSHHHHTTEEEEEE
T ss_pred             HHHhhcc-cCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccc-cccCCCCCcChhcccCccCcEEEEec
Confidence            9999975 88999988777775  444   68999999999999999999854 33222111111      136899999


Q ss_pred             CCcccC--CCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHH
Q 013217          230 THKSLR--GPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASR  307 (447)
Q Consensus       230 ~~K~l~--Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~  307 (447)
                      +||+++  |.|.|++++++      ++.+.+........ .+++....+++..+++.. ....++..+++.++++.+.+.
T Consensus       234 ~sK~~~~~G~r~G~~~~~~------~~~~~l~~~~~~~~-~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~  305 (386)
T 1u08_A          234 FGKTYHMTGWKVGYCVAPA------PISAEIRKVHQYLT-FSVNTPAQLALADMLRAE-PEHYLALPDFYRQKRDILVNA  305 (386)
T ss_dssp             HHHHTTCGGGCCEEEECCH------HHHHHHHHHHHHHT-SSCCHHHHHHHHHHHHHC-THHHHTHHHHHHHHHHHHHHH
T ss_pred             chhhcCCcccceEEEEcCH------HHHHHHHHHHHhhc-cCCChHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHH
Confidence            999984  56679999987      67666654321111 223444455556677654 344577788888999999999


Q ss_pred             HHHCCcEeeeCCCCCeeEEecCCCCC-CCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHH
Q 013217          308 LVELGYKLVSGGSDNHLVLVDLRPMG-IDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFV  385 (447)
Q Consensus       308 L~~~g~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~  385 (447)
                      |++.|+++..+ ..++++|+++...+ .+..++.+.| +++||.+..+...+. .+..++.+|+++.  ++    +++++
T Consensus       306 L~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~-~~~~~~~iRis~~--~~----~~~i~  377 (386)
T 1u08_A          306 LNESRLEILPC-EGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCA-DPFPHKLIRLCFA--KK----ESTLL  377 (386)
T ss_dssp             TTSSSCEECCC-CBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCS-SCCCSCEEEEECC--SC----HHHHH
T ss_pred             HHHCCCeecCC-CceEEEEEecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCC-CCCCCCEEEEEEc--CC----HHHHH
Confidence            98888887643 33566788875421 4567777766 478999975421111 1123468999985  24    89999


Q ss_pred             HHHHHHH
Q 013217          386 AIADFIH  392 (447)
Q Consensus       386 ~l~~~i~  392 (447)
                      ++++.|+
T Consensus       378 ~~~~~l~  384 (386)
T 1u08_A          378 AAAERLR  384 (386)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9888775

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=99.95  E-value=1.8e-25  Score=222.02  Aligned_cols=339  Identities=14%  Similarity=0.104  Sum_probs=223.9

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--C-CccceeeecCC
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--E-NKWGVNVQPLS   94 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~-~~~~~~v~~~s   94 (447)
                      +..|+|..+++.  .++.+.+++...+.+....+|+.      .....++++...+++.+.+|.+  + +.+   +.+++
T Consensus        37 ~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~------~~g~~~l~~~ia~~~~~~~g~~~~~~~~v---~~t~g  107 (412)
T 2x5d_A           37 EDIIDLSMGNPDGPTPPHIVEKLCTVAQREDTHGYST------SRGIPRLRRAISHWYRDRYDVQIDPESEA---IVTIG  107 (412)
T ss_dssp             CCCEECSSCCCCSCCCHHHHHHHHHTC---------C------TTCCHHHHHHHHHHHHHHHCCCCCTTTSE---EEESC
T ss_pred             CCEEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC------CCCcHHHHHHHHHHHHHHhCCCCCCCcCE---EEcCC
Confidence            346888777764  47899999988765421123321      1123456655556666666863  3 332   22345


Q ss_pred             cHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-CCCCCHHHHHHHhhhhCCcEE
Q 013217           95 GSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLI  173 (447)
Q Consensus        95 Gs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~~~~~~~kli  173 (447)
                      |++|+..++.++++|||+|++.+|.|.++..        .+...|.  +++.++++++ ++.+|++++++++++ ++++|
T Consensus       108 ~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v  176 (412)
T 2x5d_A          108 SKEGLAHLMLATLDHGDTILVPNPSYPIHIY--------GAVIAGA--QVRSVPLVPGIDFFNELERAIRESIP-KPRMM  176 (412)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHHHTC--EEEEEECSTTSCHHHHHHHHHHTEES-CCSEE
T ss_pred             hHHHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHcCC--EEEEeecCCccCCCCCHHHHHHhccc-CceEE
Confidence            5699999999999999999999998876532        2233454  5555556644 345899999998875 89999


Q ss_pred             EEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCC---CC---CcccEEEeCCCccc--CCCCCc
Q 013217          174 IAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVAD---PF---KYCDVVTTTTHKSL--RGPRGG  240 (447)
Q Consensus       174 i~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~---~~---~~~Di~~~s~~K~l--~Gp~gG  240 (447)
                      +++.++||+  ..+   +++|.++|+++|+++|+|++|..+. ..+....   .+   ...+++++|+||++  +|.|.|
T Consensus       177 ~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~-~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G  255 (412)
T 2x5d_A          177 ILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIV-YDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIG  255 (412)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCB-CTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCE
T ss_pred             EECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccc-cCCCCCCChhhccCccCcEEEEecCccccCCcccceE
Confidence            998777775  444   6889999999999999999986543 2211111   11   14679999999998  466779


Q ss_pred             eEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCC
Q 013217          241 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS  320 (447)
Q Consensus       241 ~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~  320 (447)
                      ++++++      ++.+.+....... ..+++....+++..+++.. ...+++..+++.++++.+.+.|.+.|+++..+ .
T Consensus       256 ~~~~~~------~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~  326 (412)
T 2x5d_A          256 FMVGNP------ELVSALARIKSYH-DYGTFTPLQVAAIAALEGD-QQCVRDIARQYQQRRDVLVKGLREAGWMVENP-K  326 (412)
T ss_dssp             EEEECH------HHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC-S
T ss_pred             EEEcCH------HHHHHHHHHHhhh-ccCCCHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCEecCC-C
Confidence            999977      6776665432211 1234555555555566543 34467778888999999999998888876543 3


Q ss_pred             CCeeEEecCCCCCC---CHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          321 DNHLVLVDLRPMGI---DGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       321 ~~~~~~v~~~~~~~---~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      .++++|+++.. ++   +..++.+.| +++||.+..+..++.   ...+.+|++++.  +    ++++++.++.|.++++
T Consensus       327 ~g~~~~~~~~~-~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~---~~~~~iRis~~~--~----~~~l~~~l~~l~~~l~  396 (412)
T 2x5d_A          327 ASMYVWAKIPE-PYAHLGSLEFAKKLLQDAKVSVSPGIGFGD---YGDDHVRFALIE--N----RDRLRQAVRGIKAMFR  396 (412)
T ss_dssp             BSSEEEEECCT-TTGGGCHHHHHHHHHHHHCEECEEGGGGCG---GGTTEEEEECCS--C----HHHHHHHHHHHHHHHH
T ss_pred             eeeEEEEEcCC-ccCCCCHHHHHHHHHHHCCEEEeCchhhCC---CCCCeEEEEecC--C----HHHHHHHHHHHHHHHH
Confidence            35567777742 34   566777777 558999975432211   124689999864  4    8899999999998887


Q ss_pred             HH
Q 013217          397 IT  398 (447)
Q Consensus       397 ~~  398 (447)
                      ..
T Consensus       397 ~~  398 (412)
T 2x5d_A          397 AD  398 (412)
T ss_dssp             HT
T ss_pred             hc
Confidence            53

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.95  E-value=1.1e-26  Score=227.74  Aligned_cols=324  Identities=10%  Similarity=0.012  Sum_probs=209.0

Q ss_pred             CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHH-HHHcC-CCCCccceeeecCCcHHHHHHHHHHh-c
Q 013217           31 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRA-LAAFN-LDENKWGVNVQPLSGSPANFEVYTAI-L  107 (447)
Q Consensus        31 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~-~~~~g-~~~~~~~~~v~~~sGs~a~~~~~~al-~  107 (447)
                      ..++.+++++.+.+.+.+        +........++|    +.+ ++++| .+.     .+.++||+.|+..++.++ +
T Consensus        13 ~~~~~i~~a~~~~~~~~~--------~~~~~~~~~~l~----~~~~a~~~g~~~~-----~v~~~sgt~al~~al~~l~~   75 (377)
T 3ju7_A           13 VPVIEYLDELKEIDASHI--------YTNYGPINQRFE----QTIMSGFFQNRGA-----VTTVANATLGLMAAIQLKKR   75 (377)
T ss_dssp             CCGGGGHHHHHHHHHHTC--------CSSSCHHHHHHH----HHHHHHTSTTCSE-----EEEESCHHHHHHHHHHHHSC
T ss_pred             CCcHHHHHHHHHHHHcCC--------cccCCHHHHHHH----HHHHHHHhCCCCe-----EEEeCCHHHHHHHHHHHcCC
Confidence            346778888888776632        111123455666    567 89999 332     355689999999999998 9


Q ss_pred             CCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhC--CcEEEEcCCCCCCCCC
Q 013217          108 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR--PKLIIAGASAYPRDFD  185 (447)
Q Consensus       108 ~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~--~klii~~~~~~~~~~~  185 (447)
                      +|||+|+++++.|.++..        .+...|.  +++.++++++++.+|++++++++...+  ||+|+.+++ ++...|
T Consensus        76 ~~Gd~Vi~~~~~~~~~~~--------~~~~~G~--~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~~~-~G~~~~  144 (377)
T 3ju7_A           76 KKGKYALMPSFTFPATPL--------AAIWCGL--EPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPYAT-FGSWMN  144 (377)
T ss_dssp             TTCCEEEEESSSCTHHHH--------HHHHTTC--EEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCBCG-GGBCCC
T ss_pred             CCcCEEEECCCCcHHHHH--------HHHHcCC--EEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEECC-CCCccC
Confidence            999999999998877532        2334554  666666776678999999999883336  888875432 334789


Q ss_pred             hHHHHHHHHHhCCEEEEehhhhccccccccCC-CCCCcccEEEeCCCcccCCCCCceEEeecCCcchhhHHHHhhhccCC
Q 013217          186 YPRMRQIADAVGALLMMDMAHISGLVAASVVA-DPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFP  264 (447)
Q Consensus       186 ~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~-~~~~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~  264 (447)
                      +++|.++|+ +|+++++|++|+.|....+... ..+...++++++.||+++++.||+++++++     ++.+++......
T Consensus       145 ~~~i~~la~-~~~~vi~D~a~a~g~~~~~~~~g~~~~d~~~~S~~~~K~l~~g~gG~~~~~~~-----~l~~~~~~~~~~  218 (377)
T 3ju7_A          145 LEEYEELEK-KGVPVVVDAAPGFGLMNGGMHYGQDFSGMIIYSFHATKPFGIGEGGLIYSKNE-----EDIQRIKRMGNF  218 (377)
T ss_dssp             CHHHHHHHH-TTCCBEEECTTCTTCEETTEETTTTCSSEEEEECBTTSSSCCBSCEEEEESCH-----HHHHHHHHHTBT
T ss_pred             HHHHHHHHh-cCCEEEEECCCccCCeECCEeccCCCCcEEEEECCCCCcCCCCCcEEEEECCH-----HHHHHHHHHHhc
Confidence            999999999 9999999999988865433221 111223444455689998878899988774     676666543332


Q ss_pred             CC--------CC-CCcH-HHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCC---cEeeeCC--CCCee-EEec
Q 013217          265 GL--------QG-GPHN-HTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG---YKLVSGG--SDNHL-VLVD  328 (447)
Q Consensus       265 ~~--------~g-~p~~-~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g---~~~~~~~--~~~~~-~~v~  328 (447)
                      +.        .| ...+ ...+++  ++..+  ..++++.++..++++.+.+.|.+.+   +.+....  ...+. +.+.
T Consensus       219 g~~~~~~~~~~g~~~~~~~~~aa~--~~~~l--~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (377)
T 3ju7_A          219 GFDTNRECTMMGFNCKMSEYAAAI--GIATM--KKWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPIL  294 (377)
T ss_dssp             TBCTTSCBCSSCCBCCCCHHHHHH--HHHHH--HTHHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEE
T ss_pred             CCCCCCceeeccccCCCCHHHHHH--HHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEE
Confidence            21        01 1111 112222  22222  3467778899999999999998854   2222211  11222 2233


Q ss_pred             CCCCCCCHHHHHHHHhhcCeEEccCC-CCCCCCC-C--------------CCCeEEEecCccccCCCCHHHHHHHHHHHH
Q 013217          329 LRPMGIDGARVEKILDMASITLNKNS-VPGDKSA-L--------------VPGGIRIGSPAMTTRGFSEKEFVAIADFIH  392 (447)
Q Consensus       329 ~~~~~~~~~~~~~~L~~~gI~v~~~~-~p~~~~~-~--------------~~~~iRig~~~~~~~g~~~~di~~l~~~i~  392 (447)
                      +. ...+.+++.+.|.++||.++..+ .|.+..+ +              ....||+.++...+    ++|++++++.|+
T Consensus       295 ~~-~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t----~~di~~v~~~l~  369 (377)
T 3ju7_A          295 CP-EEVRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMT----KEIVEQIVICLG  369 (377)
T ss_dssp             CC-TTSCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCC----HHHHHHHHHHHT
T ss_pred             eC-ChhhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCC----HHHHHHHHHHHH
Confidence            32 23357899999999999998764 2322211 0              12358888765555    999999999998


Q ss_pred             HHHHH
Q 013217          393 EGVEI  397 (447)
Q Consensus       393 ~~l~~  397 (447)
                      +++..
T Consensus       370 ~~~~~  374 (377)
T 3ju7_A          370 QKVVS  374 (377)
T ss_dssp             C----
T ss_pred             HHHhc
Confidence            87764

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.95  E-value=9.3e-25  Score=213.58  Aligned_cols=322  Identities=17%  Similarity=0.150  Sum_probs=225.3

Q ss_pred             CeeEecCCCC--CCHHHHHHHhhhhhccC--CCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CCCccceeeecCCc
Q 013217           22 SLELIASENF--TSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSG   95 (447)
Q Consensus        22 ~i~l~~~~n~--~~~~v~~a~~~~~~~~~--~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~~~~~v~~~sG   95 (447)
                      .|+|..+++.  .++.+.+++.+.+.+..  ..+|+..      .. .++++...+++.+.+|.  +++    .|.+++|
T Consensus        32 ~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~------~~-~~l~~~la~~l~~~~g~~~~~~----~v~~~~G  100 (369)
T 3cq5_A           32 DIRLNTNENPYPPSEALVADLVATVDKIATELNRYPER------DA-VELRDELAAYITKQTGVAVTRD----NLWAANG  100 (369)
T ss_dssp             SEECSSCCCCSCCCHHHHHHHHHHHHHHGGGTTSCCCT------TC-HHHHHHHHHHHHHHHCCCCCGG----GEEEESH
T ss_pred             ceeccCCCCCCCCCHHHHHHHHHHHHhcccccccCCCc------cH-HHHHHHHHHhhhhcccCCCChH----hEEECCC
Confidence            3788777774  47899999988775420  1233221      12 35665555666666654  343    3444677


Q ss_pred             H-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEE
Q 013217           96 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII  174 (447)
Q Consensus        96 s-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii  174 (447)
                      + +++..++.++++|||+|++.++.|.++..        .+...|.  +++.++.+ +++.+|++++++++++.++++|+
T Consensus       101 ~~~al~~~~~~l~~~gd~Vl~~~~~y~~~~~--------~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~v~  169 (369)
T 3cq5_A          101 SNEILQQLLQAFGGPGRTALGFQPSYSMHPI--------LAKGTHT--EFIAVSRG-ADFRIDMDVALEEIRAKQPDIVF  169 (369)
T ss_dssp             HHHHHHHHHHHHCSTTCEEEEEESSCTHHHH--------HHHHTTC--EEEEEECC-TTSSCCHHHHHHHHHHHCCSEEE
T ss_pred             hHHHHHHHHHHhcCCCCEEEEcCCChHHHHH--------HHHHcCC--EEEEecCC-cCCCCCHHHHHHHhhccCCCEEE
Confidence            6 88889999999999999999998876532        2234454  44555555 45689999999998765899999


Q ss_pred             EcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCC-CCCc-ccEEEeCCCcccC--CCCCceEEeecCC
Q 013217          175 AGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD-PFKY-CDVVTTTTHKSLR--GPRGGMIFFKKDP  248 (447)
Q Consensus       175 ~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~-~~~~-~Di~~~s~~K~l~--Gp~gG~i~~~~~~  248 (447)
                      ++.++||+  ..|.+++.++|+.+++++++|++|+.+......... .-.. .+++++|+||+++  |.|.|++++++  
T Consensus       170 ~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~--  247 (369)
T 3cq5_A          170 VTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANP--  247 (369)
T ss_dssp             EESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECT--
T ss_pred             EeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCH--
Confidence            98777764  789999999999999999999998654321111110 0012 4589999999984  66679999987  


Q ss_pred             cchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEec
Q 013217          249 VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVD  328 (447)
Q Consensus       249 ~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~  328 (447)
                          ++.+.+.....+.   +++....++...+++..  ..+++..+++.++++.+.+.|.+.|+++..+  ..++++++
T Consensus       248 ----~~~~~l~~~~~~~---~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~~~~~~~~  316 (369)
T 3cq5_A          248 ----AFIDAVMLVRLPY---HLSALSQAAAIVALRHS--ADTLGTVEKLSVERVRVAARLEELGYAVVPS--ESNFVFFG  316 (369)
T ss_dssp             ----HHHHHHHTTSCTT---CSCHHHHHHHHHHHHTH--HHHHTHHHHHHHHHHHHHHHHHHHTCEEECC--SSSEEEEE
T ss_pred             ----HHHHHHHHcCCCC---CCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHhCCCEECCC--CCeEEEEE
Confidence                7777776543322   34555555555566541  2356778888899999999998888887642  34566777


Q ss_pred             CCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          329 LRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       329 ~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      +.   .+..++.+.|.++||.+..+    .    .++.+|++++   +    ++|++++.++|++++.
T Consensus       317 ~~---~~~~~l~~~l~~~gi~v~~~----~----~~~~iRis~~---~----~~~i~~~~~~l~~~~~  366 (369)
T 3cq5_A          317 DF---SDQHAAWQAFLDRGVLIRDV----G----IAGHLRTTIG---V----PEENDAFLDAAAEIIK  366 (369)
T ss_dssp             CC---SSHHHHHHHHHHTTEECBCC----S----CTTEEEEECC---C----HHHHHHHHHHHHHHHT
T ss_pred             CC---CCHHHHHHHHHHCCEEEEEC----C----CCCeEEEEeC---C----HHHHHHHHHHHHHHHh
Confidence            64   36778888899999998643    1    1458999976   3    8999999999988764

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=99.95  E-value=3.2e-25  Score=221.32  Aligned_cols=356  Identities=12%  Similarity=0.032  Sum_probs=235.2

Q ss_pred             CCHHHHHHHHHHHHHhhcCeeEecCCCC--CCHHHHHHHhhhhhcc--CCCCCCCCcccCchhHHHHHHHHHHHHHHHHc
Q 013217            4 CNPEVCEIITKEKERQFKSLELIASENF--TSRAVMEAVGSCLTNK--YSEGLPGKRYYGGNEYIDELETLCQKRALAAF   79 (447)
Q Consensus         4 ~~~~~~~~~~~e~~~~~~~i~l~~~~n~--~~~~v~~a~~~~~~~~--~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~   79 (447)
                      .++.++..+.+. ..+...|+|..+.+.  .++.+.+++...+...  ...+|+..      ....++++...+++.+.+
T Consensus        22 ~~~~~~~~~~~~-~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~------~g~~~l~~~la~~l~~~~   94 (429)
T 1yiz_A           22 STKSVWVEYIQL-AAQYKPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRG------FGHPRLVQALSKLYSQLV   94 (429)
T ss_dssp             CTTCHHHHHHHH-HHHHCCEECCSSSCSSCCCHHHHHHHHHHHTCSCGGGGSCCCS------SCCHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHH-hccCCEEEecCCCCCCCCCHHHHHHHHHHHhccccCccCCCCC------CCcHHHHHHHHHHHHHHh
Confidence            455566655543 334567888777663  5799999998877541  01123221      112456555566777777


Q ss_pred             CCC--CC-ccceeeecCCc-HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC---
Q 013217           80 NLD--EN-KWGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES---  152 (447)
Q Consensus        80 g~~--~~-~~~~~v~~~sG-s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---  152 (447)
                      |.+  ++ .+    .+++| ++|+..++.++++|||+|++..|.|.++..        .+...|.  +++.++++++   
T Consensus        95 g~~~~~~~~v----~~~~g~~~a~~~~~~~~~~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~  160 (429)
T 1yiz_A           95 DRTINPMTEV----LVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEP--------MVKAAGG--IPRFIPLKPNKTG  160 (429)
T ss_dssp             TSCCCTTTSE----EEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECBCCCSS
T ss_pred             CCCCCCcCCE----EEecChHHHHHHHHHHhcCCCCEEEEcCCCchhHHH--------HHHHcCC--EEEEEeCCccccc
Confidence            853  43 32    23555 599999999999999999999988876531        2234454  4445555543   


Q ss_pred             ------CCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCC--
Q 013217          153 ------TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADP--  219 (447)
Q Consensus       153 ------~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~--  219 (447)
                            ++.+|+++|++++++ ++++|++++++||+  ..   ++++|.++|+++|+++|+|++|.. +...+....+  
T Consensus       161 ~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~  238 (429)
T 1yiz_A          161 GTISSADWVLDNNELEALFNE-KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEH-MVFEPFEHIRIC  238 (429)
T ss_dssp             SSEEGGGCBCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT-CBCTTSCCCCGG
T ss_pred             ccccccCcccCHHHHHHHhcc-CceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccc-cccCCCCCcChh
Confidence                  457999999999976 88999988777775  44   489999999999999999999753 3322211111  


Q ss_pred             -C---CcccEEEeCCCcccC--CCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHH-----hc-C
Q 013217          220 -F---KYCDVVTTTTHKSLR--GPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH-----AQ-S  287 (447)
Q Consensus       220 -~---~~~Di~~~s~~K~l~--Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~-----~~-~  287 (447)
                       +   .+.|+++.|+||+++  |.|.|++++++      ++.+.+....... ..+.+....+++..+++.     .. .
T Consensus       239 ~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~------~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~  311 (429)
T 1yiz_A          239 TLPGMWERTITIGSAGKTFSLTGWKIGWAYGPE------ALLKNLQMVHQNC-VYTCATPIQEAIAVGFETELKRLKSPE  311 (429)
T ss_dssp             GSTTTGGGEEEEEEHHHHHTCGGGCCEEEESCH------HHHHHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHTTTTSTT
T ss_pred             hccCCcCceEEEecchhccCCCCcceEEEEeCH------HHHHHHHHHHhhc-ccCCChHHHHHHHHHHhcccccccchH
Confidence             1   247899999999874  56679999987      6777665432111 223455555566667776     32 2


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCC-----------CCHHHHHHHH-hhcCeEEccCCC
Q 013217          288 PEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMG-----------IDGARVEKIL-DMASITLNKNSV  355 (447)
Q Consensus       288 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~-----------~~~~~~~~~L-~~~gI~v~~~~~  355 (447)
                      ..+++..+++.++++.+.+.|.+.|+++..+ ..++++|+++....           .+..++.+.| +++||.+..+..
T Consensus       312 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~  390 (429)
T 1yiz_A          312 CYFNSISGELMAKRDYMASFLAEVGMNPTVP-QGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSA  390 (429)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHTCEEEEC-SBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-CcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchH
Confidence            3457778888899999999998888887654 33566788875421           3456677766 579999965421


Q ss_pred             CCCCC--CCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          356 PGDKS--ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       356 p~~~~--~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      .+...  ....+.+|++++  ++    +++++++++.|.++++
T Consensus       391 f~~~~~~~~~~~~iRis~~--~~----~e~i~~~l~~l~~~l~  427 (429)
T 1yiz_A          391 FYSEPNKHLGEDFVRYCFF--KK----DENLQKAAEILRKWKG  427 (429)
T ss_dssp             GSCGGGGGGTTTEEEEECC--SC----HHHHHHHHHHHHHHSC
T ss_pred             hCCCcccCCCCCeEEEEec--CC----HHHHHHHHHHHHHhcc
Confidence            11100  011468999986  24    8999999999987653

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.95  E-value=4.7e-26  Score=226.63  Aligned_cols=335  Identities=15%  Similarity=0.113  Sum_probs=218.4

Q ss_pred             cCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh
Q 013217           27 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI  106 (447)
Q Consensus        27 ~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al  106 (447)
                      +...++++.+++++...+.+.....|+.  ..+..+..++++    +++++++|.+.     .+.++||++|+..++.++
T Consensus         9 p~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~g~~~l~~~l~----~~la~~~g~~~-----~i~~~~gt~al~~~~~~~   77 (418)
T 2c81_A            9 PEWPQHSDRTRRKIEEVFQSNRWAISGY--WTGEESMERKFA----KAFADFNGVPY-----CVPTTSGSTALMLALEAL   77 (418)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHTCCSTTSB--CCSSCCHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHhcCCccccCc--ccCCHHHHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHc
Confidence            3445678999999988886531111321  122223344444    68889999873     355688999999999999


Q ss_pred             -cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCCCCC
Q 013217          107 -LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFD  185 (447)
Q Consensus       107 -~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~~~~  185 (447)
                       ++|||+|++..+.|.++..        .+...|.  +++.++++++++.+|+++|++++++ ++++|+++++ ++...+
T Consensus        78 ~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~-~G~~~~  145 (418)
T 2c81_A           78 GIGEGDEVIVPSLTWIATAT--------AVLNVNA--LPVFVDVEADTYCIDPQLIKSAITD-KTKAIIPVHL-FGSMAN  145 (418)
T ss_dssp             TCCTTCEEEEESSSCTHHHH--------HHHHTTC--EEEEECBCTTTCSBCHHHHGGGCCT-TEEEECCBCC-TTCCCC
T ss_pred             CCCCcCEEEECCCccHhHHH--------HHHHcCC--EEEEEecCCCCCCcCHHHHHHhhCC-CCeEEEEeCC-cCCccc
Confidence             8999999999998877632        2334454  5666667655788999999999876 8898887642 334789


Q ss_pred             hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCceEEeecCCcchhhHHHHhhhccCCC
Q 013217          186 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPG  265 (447)
Q Consensus       186 ~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~  265 (447)
                      +++|.++|+++|+++++|++|+.|....+.....+..+++.++|.||++++++||+++++++     ++.+++......+
T Consensus       146 ~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~s~s~~K~~~~g~~g~~~~~~~-----~l~~~~~~~~~~~  220 (418)
T 2c81_A          146 MDEINEIAQEHNLFVIEDCAQSHGSVWNNQRAGTIGDIGAFSCQQGKVLTAGEGGIIVTKNP-----RLFELIQQLRADS  220 (418)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCSSSCEEEEESCH-----HHHHHHHHHHBTT
T ss_pred             HHHHHHHHHHCCCEEEEECcccccCccCCEecccccceEEEeccCCcccCCCCeEEEEECCH-----HHHHHHHHHHHhC
Confidence            99999999999999999999987753322111111123344444599986557899998642     5555554321111


Q ss_pred             -------------CC---CCCc--------HHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCC
Q 013217          266 -------------LQ---GGPH--------NHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGS  320 (447)
Q Consensus       266 -------------~~---g~p~--------~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~  320 (447)
                                   +.   +++.        ....+++  .+...  ..++++.++..++++++.+.|.+. |+++.....
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~--~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~  296 (418)
T 2c81_A          221 RVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAI--LLDQL--QELDDKNAIREKNAMFLNDALSKIDGIKVMKRPP  296 (418)
T ss_dssp             EEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHH--HHHHH--TTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCT
T ss_pred             ccccccccccccchhhccccccccCcCCCcCHHHHHH--HHHHH--HHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCC
Confidence                         00   0000        1111222  11222  246677888888999999999874 888763222


Q ss_pred             C----C-eeEEecCCC---CCCCHHHHHHHHhhc-CeE---EccCCCCCCCCC-C-----------------------C-
Q 013217          321 D----N-HLVLVDLRP---MGIDGARVEKILDMA-SIT---LNKNSVPGDKSA-L-----------------------V-  363 (447)
Q Consensus       321 ~----~-~~~~v~~~~---~~~~~~~~~~~L~~~-gI~---v~~~~~p~~~~~-~-----------------------~-  363 (447)
                      .    . +++.+.+..   .+.+..++.+.|.++ ||.   ++.++.|.+..+ +                       . 
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (418)
T 2c81_A          297 QVSRQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYP  376 (418)
T ss_dssp             TEEECCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCH
T ss_pred             CCcccccEEEEEEEccccccccCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCCh
Confidence            2    2 233355532   246778899999887 999   877543422110 0                       0 


Q ss_pred             ------CCeEEEecCccc-cCCCCHHHHHHHHHHHHHHHHH
Q 013217          364 ------PGGIRIGSPAMT-TRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       364 ------~~~iRig~~~~~-~~g~~~~di~~l~~~i~~~l~~  397 (447)
                            .+.||++++..+ |    ++|+++++++|+++++.
T Consensus       377 ~~~~~~~~~lrl~~~~~~gt----~edi~~~~~~l~~~~~~  413 (418)
T 2c81_A          377 VSERASGQSIVIHHAILLAE----PSHLSLLVDAVAELARK  413 (418)
T ss_dssp             HHHHHHHHEEEEEGGGGGSC----HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCEEEecCCccCCC----HHHHHHHHHHHHHHHHh
Confidence                  147999999888 8    99999999999988764

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=99.94  E-value=1e-25  Score=220.75  Aligned_cols=333  Identities=15%  Similarity=0.131  Sum_probs=224.3

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCc
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSG   95 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sG   95 (447)
                      +..|+|..+++.  .++.|.+++...+.+. ..+|+. .  +     .++++...+++.+.+|.+  ++.+   +.+++|
T Consensus        23 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~-~--~-----~~lr~~la~~~~~~~~~~~~~~~i---~~t~g~   90 (377)
T 3fdb_A           23 QGVLPLWVAESDFSTCPAVLQAITDAVQRE-AFGYQP-D--G-----SLLSQATAEFYADRYGYQARPEWI---FPIPDV   90 (377)
T ss_dssp             TTSEECCSSCCCSCCCHHHHHHHHHHHHTT-CCSSCC-S--S-----CCHHHHHHHHHHHHHCCCCCGGGE---EEESCH
T ss_pred             CCeeeecccCCCCCCCHHHHHHHHHHHHcC-CCCCCC-C--C-----HHHHHHHHHHHHHHhCCCCCHHHE---EEeCCh
Confidence            456888888774  5799999998887652 224443 1  1     234444446676666643  4432   223444


Q ss_pred             HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEE
Q 013217           96 SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIA  175 (447)
Q Consensus        96 s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~  175 (447)
                      ++|+..++.++++|||+|++..+.|.++..        .+...|.  +++.++++++   +|++++++++++ ++++|++
T Consensus        91 ~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~---~d~~~l~~~l~~-~~~~v~i  156 (377)
T 3fdb_A           91 VRGLYIAIDHFTPAQSKVIVPTPAYPPFFH--------LLSATQR--EGIFIDATGG---INLHDVEKGFQA-GARSILL  156 (377)
T ss_dssp             HHHHHHHHHHHSCTTCCEEEEESCCTHHHH--------HHHHHTC--CEEEEECTTS---CCHHHHHHHHHT-TCCEEEE
T ss_pred             HHHHHHHHHHhcCCCCEEEEcCCCcHhHHH--------HHHHcCC--EEEEccCCCC---CCHHHHHHHhcc-CCCEEEE
Confidence            599999999999999999999998876532        2334454  4555556533   999999999987 7999999


Q ss_pred             cCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccc-cCCCCCC-----cccEEEeCCCccc--CCCCCceE
Q 013217          176 GASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAAS-VVADPFK-----YCDVVTTTTHKSL--RGPRGGMI  242 (447)
Q Consensus       176 ~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~-~~~~~~~-----~~Di~~~s~~K~l--~Gp~gG~i  242 (447)
                      +.++||+  ..   ++++|.++|+++|+++|+|++|.. +...+ ....++.     ..++++.|+||++  +|.|.|++
T Consensus       157 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~  235 (377)
T 3fdb_A          157 CNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAP-LVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQI  235 (377)
T ss_dssp             ESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGG-GBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEEE
T ss_pred             eCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccch-hhcCCCCCcccHHHccCCCcEEEEEeChHhccCcchhheEE
Confidence            8778775  44   467788889999999999999854 33333 1111221     2348899999998  46677987


Q ss_pred             EeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC--CcEeeeCCC
Q 013217          243 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVSGGS  320 (447)
Q Consensus       243 ~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~  320 (447)
                      ++.++     ++.+.+.... ....++++....++...+++.. ...+++..+++.++++.+.+.|++.  |+++..+ .
T Consensus       236 ~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~  307 (377)
T 3fdb_A          236 IFSNP-----SDAEHWQQLS-PVIKDGASTLGLIAAEAAYRYG-TDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPM-Q  307 (377)
T ss_dssp             ECCSH-----HHHHHHHHSC-HHHHCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCC-S
T ss_pred             EeCCH-----HHHHHHHHHH-HhhcCCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecC-C
Confidence            77442     6777665532 1122345666666656666653 2345777888999999999999884  8887654 3


Q ss_pred             CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          321 DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       321 ~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      .+.+.|+++...+.+.+.+...++++||.+..+...+.   ..++.+|+++.  ++    ++++++.++.|.++++
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~~~~Ris~~--~~----~e~i~~~l~~l~~~l~  374 (377)
T 3fdb_A          308 ATYLMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAWFGE---DGTGFCRLNFA--TS----REVLEEAIDRMAKAVS  374 (377)
T ss_dssp             BCSEEEEECTTSCCCSCHHHHHHHHHCEECEEGGGGCG---GGTTEEEEECC--SC----HHHHHHHHHHHHHHHT
T ss_pred             eeEEEEEECcccCCCHHHHHHHHHhCCEEecCChhccC---CCCCEEEEEeC--CC----HHHHHHHHHHHHHHHh
Confidence            45556788765444434445555667999975422211   12468999976  24    8999999999988775

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.94  E-value=2.6e-25  Score=219.64  Aligned_cols=336  Identities=13%  Similarity=0.075  Sum_probs=219.9

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccC---CCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CCCccceeeec
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKY---SEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQP   92 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~---~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~~~~~v~~   92 (447)
                      ++.|+|..+.+.  .++.+.+++...+.+..   ..+|+..      ....++.+...+++.+.+|.  +++.    |.+
T Consensus        35 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~------~g~~~lr~~la~~l~~~~g~~~~~~~----i~~  104 (398)
T 3ele_A           35 ENVYDFSIGNPSIPAPQIVNDTIKELVTDYDSVALHGYTSA------QGDVETRAAIAEFLNNTHGTHFNADN----LYM  104 (398)
T ss_dssp             GGCEECCSCCCCSCCCHHHHHHHHHHHHHSCHHHHHSCCCT------TCCHHHHHHHHHHHHHHHCCCCCGGG----EEE
T ss_pred             CCeEEeecCCCCCCCCHHHHHHHHHHHhcCCccccCCcCCC------CCcHHHHHHHHHHHHHHhCCCCChHH----EEE
Confidence            456888766542  57899999988775421   1233221      11234555556778888885  4442    333


Q ss_pred             CCc-HHHHHHHHHHhcCCC-CEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCC
Q 013217           93 LSG-SPANFEVYTAILKPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRP  170 (447)
Q Consensus        93 ~sG-s~a~~~~~~al~~pg-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~  170 (447)
                      ++| ++|+..++.++++|| |+|++.+|.|.++..        .+...|.  +++.++++++++.+|+++|++++++ ++
T Consensus       105 ~~g~~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~l~~-~~  173 (398)
T 3ele_A          105 TMGAAASLSICFRALTSDAYDEFITIAPYFPEYKV--------FVNAAGA--RLVEVPADTEHFQIDFDALEERINA-HT  173 (398)
T ss_dssp             ESSHHHHHHHHHHHHCCSTTCEEEEESSCCTHHHH--------HHHHTTC--EEEEECCCTTTSSCCHHHHHHTCCT-TE
T ss_pred             ccCHHHHHHHHHHHHcCCCCCEEEEeCCCchhhHH--------HHHHcCC--EEEEEecCCcCCcCCHHHHHHHhCc-CC
Confidence            555 599999999999999 999999998876531        2334454  5666667655678999999999987 89


Q ss_pred             cEEEEcCCCCCC--CCC---hHHHHHHHHH------hCCEEEEehhhhccccccc-cCCCCCC--cccEEEeCCCccc--
Q 013217          171 KLIIAGASAYPR--DFD---YPRMRQIADA------VGALLMMDMAHISGLVAAS-VVADPFK--YCDVVTTTTHKSL--  234 (447)
Q Consensus       171 klii~~~~~~~~--~~~---~~~i~~ia~~------~g~~livD~a~~~g~~~~~-~~~~~~~--~~Di~~~s~~K~l--  234 (447)
                      ++|+++.++||+  ..+   +++|.++|++      +|+++|+|++|.. +...+ ..+....  ..++++.|+||++  
T Consensus       174 ~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~  252 (398)
T 3ele_A          174 RGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYRE-IVYDGIKVPFVTKYYDNTLVCYSYSKSLSL  252 (398)
T ss_dssp             EEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTT-CBCTTCCCCCGGGTCSSEEEEEESTTTSSC
T ss_pred             CEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccc-cccCCCCcCChHhhcCCeEEEEehhhcCCC
Confidence            999998788875  566   6777789999      9999999999753 33332 1111111  3568999999997  


Q ss_pred             CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcE
Q 013217          235 RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYK  314 (447)
Q Consensus       235 ~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~  314 (447)
                      +|.|.|+++++++......+.+.+..........+++....+++..+++   ...   ..+++.++++.+.+.|.+.|++
T Consensus       253 ~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~~~---~~~~~~~~~~~l~~~L~~~g~~  326 (398)
T 3ele_A          253 PGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQG---ATG---DINAYKENRDLLYEGLTRIGYH  326 (398)
T ss_dssp             TTTCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTT---CCC---CHHHHHHHHHHHHHHHHHHTCC
T ss_pred             ccceeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhc---CHH---HHHHHHHHHHHHHHHHHHcCCe
Confidence            5677799999874210001222222111111112233333333222222   111   3567788889999999888888


Q ss_pred             eeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          315 LVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       315 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                      +..+ ..+.++|+++..  .+..++.+.|.++||.++.+..++     .++.+|+++.  ++    +++++++++.|.++
T Consensus       327 ~~~~-~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~g~~~~-----~~~~iRis~~--~~----~e~i~~~l~~l~~~  392 (398)
T 3ele_A          327 CFKP-DGAFYMFVKALE--DDSNAFCEKAKEEDVLIVAADGFG-----CPGWVRISYC--VD----REMIKHSMPAFEKI  392 (398)
T ss_dssp             EECC-SBSSEEEEECSS--SCHHHHHHHHHTTTEECEESGGGT-----CTTEEEEECC--SC----HHHHHHHHHHHHHH
T ss_pred             ecCC-CeeEEEEEEcCC--CCHHHHHHHHHHCCEEEeCccccC-----CCCeEEEEec--CC----HHHHHHHHHHHHHH
Confidence            7654 345557777653  367888889999999997543222     1468999974  44    89999999999988


Q ss_pred             HHH
Q 013217          395 VEI  397 (447)
Q Consensus       395 l~~  397 (447)
                      ++.
T Consensus       393 l~~  395 (398)
T 3ele_A          393 YKK  395 (398)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.94  E-value=4.5e-26  Score=238.78  Aligned_cols=302  Identities=14%  Similarity=0.116  Sum_probs=212.1

Q ss_pred             HHHHHHHHHcCCCCCccceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecc
Q 013217           70 LCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR  148 (447)
Q Consensus        70 ~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  148 (447)
                      .+++.+++++|++.+     +.+++|+ ++|.+++.++++|||+|++..+.|.+++..       .+...|.....++  
T Consensus       177 e~e~~lA~~~gae~~-----i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~-------~~~l~Ga~~v~v~--  242 (730)
T 1c4k_A          177 AAEKHAARVYNADKT-----YFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNS-------ALAMAGGRPVYLQ--  242 (730)
T ss_dssp             HHHHHHHHHTTCSEE-----EEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHH-------HTTTTCCEEEEEC--
T ss_pred             HHHHHHHHHHCCCcE-----EEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHH-------HHHHCCCEEEEEe--
Confidence            456889999999852     3357887 899999999999999999999988776421       0334555333333  


Q ss_pred             cCCCC----CCCCHHHH-----HHHhhhhC-----C----cEEEEcCCCCCC-CCChHHHHHHHHHhCCEEEEehhhhcc
Q 013217          149 LDEST----GLVDYDML-----EKTAILFR-----P----KLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISG  209 (447)
Q Consensus       149 ~~~~~----~~id~~~l-----~~~~~~~~-----~----klii~~~~~~~~-~~~~~~i~~ia~~~g~~livD~a~~~g  209 (447)
                      .+.+.    +.+|+++|     ++++++.+     +    |+|+++.+++.+ ..|+++|+++|+++|+++++|+||+.+
T Consensus       243 ~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn~~G~v~dl~~I~~la~~~g~~livDeAh~~~  322 (730)
T 1c4k_A          243 TNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGY  322 (730)
T ss_dssp             EEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCG
T ss_pred             CCccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCCCCCeecCHHHHHHHHHHcCCeEEEEcccccc
Confidence            32122    34788888     88887621     4    888888777655 789999999999999999999999765


Q ss_pred             ccccccC--CCCCC----ccc----EEEeCCCcccCCCCC-ceEEeecCCcch-hhH--HHHhhhccCCCCCCCCcHHHH
Q 013217          210 LVAASVV--ADPFK----YCD----VVTTTTHKSLRGPRG-GMIFFKKDPVLG-VEL--ESAINNAVFPGLQGGPHNHTI  275 (447)
Q Consensus       210 ~~~~~~~--~~~~~----~~D----i~~~s~~K~l~Gp~g-G~i~~~~~~~~~-~~~--~~~i~~~~~~~~~g~p~~~~~  275 (447)
                      +...+..  ..++.    ++|    ++++|+||+|+|+++ |+++++++.... ..+  ..++.........++|+...+
T Consensus       323 ~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~~stsp~~~~i  402 (730)
T 1c4k_A          323 EQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMY  402 (730)
T ss_dssp             GGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHH
T ss_pred             cccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhcCcccccCHHHHHHHHHHhCCCCCcHHHH
Confidence            4332211  12221    467    999999999999986 788777641000 000  122222211223578899999


Q ss_pred             HHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH--CCcEeeeCCC---------------------------------
Q 013217          276 GGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE--LGYKLVSGGS---------------------------------  320 (447)
Q Consensus       276 aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~---------------------------------  320 (447)
                      +++.+|++.+..++..+++++..++++.+++.|++  .|++++.+..                                 
T Consensus       403 aal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  482 (730)
T 1c4k_A          403 AALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYE  482 (730)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCT
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhccCccchhcccc
Confidence            99999998776534577889999999999999988  7888754311                                 


Q ss_pred             ---CCe--e----EEecC----------CCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCH
Q 013217          321 ---DNH--L----VLVDL----------RPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSE  381 (447)
Q Consensus       321 ---~~~--~----~~v~~----------~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~  381 (447)
                         +++  +    +++..          ...++++.++.+.|.++||.++..         ....+|+.++..+|    +
T Consensus       483 ~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~---------~~~~ir~~~s~g~t----~  549 (730)
T 1c4k_A          483 GYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKS---------DLNSILFLMTPAET----P  549 (730)
T ss_dssp             TCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEE---------CSSEEEEECCTTCC----H
T ss_pred             ccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEEC---------CCCeEEEEeCCCCC----H
Confidence               111  1    33444          223578899999999999988642         23579998887777    9


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 013217          382 KEFVAIADFIHEGVEIT  398 (447)
Q Consensus       382 ~di~~l~~~i~~~l~~~  398 (447)
                      +|+++++++|.++.+..
T Consensus       550 e~i~~Ll~aL~~i~~~~  566 (730)
T 1c4k_A          550 AKMNNLITQLLQLQRLI  566 (730)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999887654

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.94  E-value=3.1e-25  Score=218.55  Aligned_cols=337  Identities=14%  Similarity=0.131  Sum_probs=224.2

Q ss_pred             hcCeeEecCCC--CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHH-HHHHHHHHHHHHcC--CCCCccceeeecCC
Q 013217           20 FKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDE-LETLCQKRALAAFN--LDENKWGVNVQPLS   94 (447)
Q Consensus        20 ~~~i~l~~~~n--~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~-le~~~~~~~~~~~g--~~~~~~~~~v~~~s   94 (447)
                      +..|+|..+.+  ..++.+.+++...+.+. ..+|+..        ..+ +++...+++.+.+|  ++++.    |.+++
T Consensus        28 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~--------~~~~lr~~la~~l~~~~g~~~~~~~----v~~t~   94 (390)
T 1d2f_A           28 ADLLPFTISDMDFATAPCIIEALNQRLMHG-VFGYSRW--------KNDEFLAAIAHWFSTQHYTAIDSQT----VVYGP   94 (390)
T ss_dssp             --CEECCSSSCSSCCCHHHHHHHHHHHTTC-CCCCCCS--------CCHHHHHHHHHHHHHHSCCCCCGGG----EEEES
T ss_pred             CCeeEeeecCCCCCCCHHHHHHHHHHHhCC-CCCCCCC--------ChHHHHHHHHHHHHHhcCCCCCHHH----EEEcC
Confidence            35678766665  35789999998877532 1233321        224 55555567777778  44442    33456


Q ss_pred             cH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC--CCCCCHHHHHHHhhhhCCc
Q 013217           95 GS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES--TGLVDYDMLEKTAILFRPK  171 (447)
Q Consensus        95 Gs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~id~~~l~~~~~~~~~k  171 (447)
                      |+ +|+.+++.++++|||+|++..|.|.++..        .+...|.  +++.++++++  ++.+|+++|++++++.+|+
T Consensus        95 g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~  164 (390)
T 1d2f_A           95 SVIYMVSELIRQWSETGEGVVIHTPAYDAFYK--------AIEGNQR--TVMPVALEKQADGWFCDMGKLEAVLAKPECK  164 (390)
T ss_dssp             CHHHHHHHHHHHSSCTTCEEEEEESCCHHHHH--------HHHHTTC--EEEEEECEECSSSEECCHHHHHHHHTSTTEE
T ss_pred             CHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHH--------HHHHCCC--EEEEeecccCCCccccCHHHHHHHhccCCCe
Confidence            55 89999999999999999999988876531        2234454  4445555432  2469999999999755789


Q ss_pred             EEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC---C-c-ccEEEeCCCccc--CCCCC
Q 013217          172 LIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K-Y-CDVVTTTTHKSL--RGPRG  239 (447)
Q Consensus       172 lii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~---~-~-~Di~~~s~~K~l--~Gp~g  239 (447)
                      +|+++.++||+  ..+   +++|.++|+++|+++|+|++|..+ ...+....++   . . .|. +.|+||++  +|.|.
T Consensus       165 ~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~r~  242 (390)
T 1d2f_A          165 IMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDM-VWGEQPHIPWSNVARGDWAL-LTSGSKSFNIPALTG  242 (390)
T ss_dssp             EEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTC-BCSSSCCCCGGGTCCSSEEE-EECSHHHHTCGGGCC
T ss_pred             EEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCCCCCcCHHHcchhhHhh-ccCccHhhcccChhh
Confidence            99888777775  444   789999999999999999998543 3222211111   1 1 277 99999987  46677


Q ss_pred             ceEEeecCCcchhhHHHHhhhccC-CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-C-CcEee
Q 013217          240 GMIFFKKDPVLGVELESAINNAVF-PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-L-GYKLV  316 (447)
Q Consensus       240 G~i~~~~~~~~~~~~~~~i~~~~~-~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~  316 (447)
                      |+++++++     ++.+.+..... ....++++....++...+++.. ...+++..+++.++++.+.+.|.+ . |+++.
T Consensus       243 G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  316 (390)
T 1d2f_A          243 AYGIIENS-----SSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQG-APWLDALRIYLKDNLTYIADKMNAAFPELNWQ  316 (390)
T ss_dssp             EEEEECSH-----HHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCC
T ss_pred             eEEEECCH-----HHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEe
Confidence            99998642     66666654332 1223455666666655667643 233567778888999999999987 3 77765


Q ss_pred             eCCCCCeeEEecCCCCCCCHHHHHHHHh-hcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          317 SGGSDNHLVLVDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       317 ~~~~~~~~~~v~~~~~~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      .+ ..+++.|+++...+.+..++.+.|. ++||.+..+..++   +..++.+|++++.  +    ++++++.++.|.+++
T Consensus       317 ~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~---~~~~~~~Ris~~~--~----~~~l~~~l~~l~~~l  386 (390)
T 1d2f_A          317 IP-QSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYG---EEGRGFVRLNAGC--P----RSKLEKGVAGLINAI  386 (390)
T ss_dssp             CC-SBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGC---GGGTTEEEEECCS--C----HHHHHHHHHHHHHHH
T ss_pred             cC-CccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccC---CCCCCeEEEEecC--C----HHHHHHHHHHHHHHH
Confidence            43 3355567777543356778888887 6899996543221   1124689999764  3    688998888888877


Q ss_pred             HH
Q 013217          396 EI  397 (447)
Q Consensus       396 ~~  397 (447)
                      ..
T Consensus       387 ~~  388 (390)
T 1d2f_A          387 RA  388 (390)
T ss_dssp             HH
T ss_pred             Hh
Confidence            53

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=99.94  E-value=2.4e-25  Score=217.73  Aligned_cols=327  Identities=13%  Similarity=0.047  Sum_probs=220.2

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCc
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSG   95 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sG   95 (447)
                      +..|+|..+++.  .++.+.+++.+.+... ..+|+..      ....++++...+++.+.+|.+  ++.+   +.+++|
T Consensus        29 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~------~~~~~l~~~la~~~~~~~g~~~~~~~v---~~~~g~   98 (370)
T 2z61_A           29 KKVIHLEIGEPDFNTPKPIVDEGIKSLKEG-KTHYTDS------RGILELREKISELYKDKYKADIIPDNI---IITGGS   98 (370)
T ss_dssp             CCCEECCCCSCSSCCCHHHHHHHHHHHHTT-CCSCCCT------TCCHHHHHHHHHHHHHHSSCCCCGGGE---EEESSH
T ss_pred             CCEEEccCCCCCCCCCHHHHHHHHHHHHcC-ccCCCCC------CCCHHHHHHHHHHHHHHhCCCCChhhE---EECCCh
Confidence            456888777764  4789999998877542 1233321      123456655566777666643  4322   223445


Q ss_pred             HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEE
Q 013217           96 SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIA  175 (447)
Q Consensus        96 s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~  175 (447)
                      ++|+..++.++++|||+|++.++.|.++..        .+...|.  +++.++       +|+++|++++++ ++++|++
T Consensus        99 ~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~v~-------~d~~~l~~~l~~-~~~~v~~  160 (370)
T 2z61_A           99 SLGLFFALSSIIDDGDEVLIQNPCYPCYKN--------FIRFLGA--KPVFCD-------FTVESLEEALSD-KTKAIII  160 (370)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEESSCCTHHHH--------HHHHTTC--EEEEEC-------SSHHHHHHHCCS-SEEEEEE
T ss_pred             HHHHHHHHHHhcCCCCEEEEeCCCchhHHH--------HHHHcCC--EEEEeC-------CCHHHHHHhccc-CceEEEE
Confidence            599999999999999999999998877532        2233443  444433       789999999976 8899888


Q ss_pred             cCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCC--CC---CcccEEEeCCCccc--CCCCCceEEeec
Q 013217          176 GASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PF---KYCDVVTTTTHKSL--RGPRGGMIFFKK  246 (447)
Q Consensus       176 ~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~--~~---~~~Di~~~s~~K~l--~Gp~gG~i~~~~  246 (447)
                      +.++||+  ..+.+ |.++|+++|+++++|++|..+. ..+....  .+   ...|++++|+||++  +|.|.|++++++
T Consensus       161 ~~p~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~~-~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~  238 (370)
T 2z61_A          161 NSPSNPLGEVIDRE-IYEFAYENIPYIISDEIYNGLV-YEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISND  238 (370)
T ss_dssp             ESSCTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTCB-SSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECCH
T ss_pred             cCCCCCcCcccCHH-HHHHHHHcCCEEEEEcchhhcc-cCCCCcCHHHccCCCCcEEEEecChhccCCccceEEEEEECH
Confidence            8777764  77888 9999999999999999986543 2221111  11   14689999999998  456679999988


Q ss_pred             CCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEE
Q 013217          247 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVL  326 (447)
Q Consensus       247 ~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~  326 (447)
                            ++.+.+....... .++++....+++..+++.+....+++..+++.++++.+.+.|.+.|+++..+ ..++++|
T Consensus       239 ------~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~~  310 (370)
T 2z61_A          239 ------EIIEAILKLQQNL-FISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDFGWEVNNP-IGAYYVF  310 (370)
T ss_dssp             ------HHHHHHHHHHHHH-TSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCCC-CBTTEEC
T ss_pred             ------HHHHHHHHHHhhc-ccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCC-CcceEEE
Confidence                  6777665432222 1234554444444455431123356677888899999999998888877543 3355566


Q ss_pred             ecCCCCCCCHHHHHHHHh-hcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          327 VDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       327 v~~~~~~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      +++..   +..++.+.|. ++||.+..+..++.   ...+.+|++++  ++    +++++++++.|.++++
T Consensus       311 ~~~~~---~~~~~~~~l~~~~gi~v~~g~~f~~---~~~~~~Ri~~~--~~----~~~i~~~~~~l~~~l~  369 (370)
T 2z61_A          311 PNIGE---DGREFAYKLLKEKFVALTPGIGFGS---KGKNYIRISYA--NS----YENIKEGLERIKEFLN  369 (370)
T ss_dssp             CBCSS---CHHHHHHHHHHHHCEECEEGGGGCG---GGSSBEEEECC--SC----HHHHHHHHHHHHHHHC
T ss_pred             EecCC---CHHHHHHHHHHhCCEEEeCchhhCC---CCCCEEEEEEe--CC----HHHHHHHHHHHHHHHh
Confidence            67653   5677888775 79999975422211   12458999987  44    8999999998887763

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.94  E-value=1.2e-25  Score=223.23  Aligned_cols=325  Identities=15%  Similarity=0.137  Sum_probs=219.0

Q ss_pred             eeEecCC-CCCCHHHHHHHhhhhhccCCCCCCCCc-ccC-c-hhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHH
Q 013217           23 LELIASE-NFTSRAVMEAVGSCLTNKYSEGLPGKR-YYG-G-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA   98 (447)
Q Consensus        23 i~l~~~~-n~~~~~v~~a~~~~~~~~~~~g~~~~~-~~~-g-~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a   98 (447)
                      +.|..+. .+.|+.|++++.+.+.+.|  +++... ++. + .+...    .+++++++++|++++++   +.+++|+++
T Consensus        30 ~yld~~~~~~~~~~v~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~~----~l~~~la~~~g~~~~~v---~~~~g~t~a  100 (416)
T 1qz9_A           30 IYLDGNSLGARPVAALARAQAVIAEEW--GNGLIRSWNSAGWRDLSE----RLGNRLATLIGARDGEV---VVTDTTSIN  100 (416)
T ss_dssp             EECCTTTSCCCBTTHHHHHHHHHHTCC--CCCGGGHHHHTSGGGHHH----HHHHHHHTTTTCCTTSE---EECSCHHHH
T ss_pred             EeecCCCcCCCcHHHHHHHHHHHHHHH--hccCccccchhhHHHHHH----HHHHHHHHHcCCCcccE---EEeCChhHH
Confidence            4444333 3568899999988886543  222211 111 1 12223    34578999999976533   223444578


Q ss_pred             HHHHHHHhc------CCCCEEEE-ecCCCCcccCCCccccccccccc--cceeEEEecccCCCCCCCCHHHHHHHhhhhC
Q 013217           99 NFEVYTAIL------KPHDRIMG-LDLPHGGHLSHGFMTPKRRVSGT--SIYFESMPYRLDESTGLVDYDMLEKTAILFR  169 (447)
Q Consensus        99 ~~~~~~al~------~pgd~Vl~-~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~  169 (447)
                      +..++.+++      +|||+|++ .++.|+++......    .....  |.  +++.+++        +++|++++++ +
T Consensus       101 l~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~----~~~~~~~g~--~~~~v~~--------~~~l~~~i~~-~  165 (416)
T 1qz9_A          101 LFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEG----LADMLQQGY--TLRLVDS--------PEELPQAIDQ-D  165 (416)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHH----HHHHHCSSC--EEEEESS--------GGGHHHHCST-T
T ss_pred             HHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHH----HHHHhcCCc--eEEEeCc--------HHHHHHHhCC-C
Confidence            877888776      89997554 44566654211000    00111  43  4444332        6888888876 8


Q ss_pred             CcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCccc-CCCCC-ceEEee
Q 013217          170 PKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSL-RGPRG-GMIFFK  245 (447)
Q Consensus       170 ~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l-~Gp~g-G~i~~~  245 (447)
                      |++|++++++|++  ..|+++|.++|+++|+++++|++|+.|....+....   ++|++++|+||++ +|+++ |+++++
T Consensus       166 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~---~~d~~~~s~~K~l~~g~~~~g~l~~~  242 (416)
T 1qz9_A          166 TAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQA---GADYAIGCTYKYLNGGPGSQAFVWVS  242 (416)
T ss_dssp             EEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHH---TCSEEEECSSSTTCCCTTCCCEEEEC
T ss_pred             ceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcCCChhhc---CCCEEEecCcccCCCCCCCeEEEEEC
Confidence            9999998777764  789999999999999999999999766442211110   3799999999997 57888 999998


Q ss_pred             cCCcchhhHHHHhhhccC----------------------CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHH
Q 013217          246 KDPVLGVELESAINNAVF----------------------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRA  303 (447)
Q Consensus       246 ~~~~~~~~~~~~i~~~~~----------------------~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~  303 (447)
                      +      ++.+.+.....                      ....|+++...++++.++++.+...++++..+++.+++++
T Consensus       243 ~------~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~  316 (416)
T 1qz9_A          243 P------QLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDL  316 (416)
T ss_dssp             T------TTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             H------HHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            7      44443332110                      0124567888888888888887656778889999999999


Q ss_pred             HHHHHHHC----CcEeeeCCC---CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCc-cc
Q 013217          304 LASRLVEL----GYKLVSGGS---DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPA-MT  375 (447)
Q Consensus       304 l~~~L~~~----g~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~-~~  375 (447)
                      +.+.|.+.    |+++..+..   ..+++++.+.    +..++.+.|.++||.+...         ..+.+|++++. .+
T Consensus       317 l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~l~~~gi~~~~~---------~~~~lRis~~~~~~  383 (416)
T 1qz9_A          317 FIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP----EGYAVIQALIDRGVIGDYR---------EPRIMRFGFTPLYT  383 (416)
T ss_dssp             HHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT----THHHHHHHHHTTTEECEEE---------TTTEEEEECCTTTC
T ss_pred             HHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecC----CHHHHHHHHHhCCcEeccC---------CCCeEEEeCcccCC
Confidence            99999885    888765421   2445666654    3677888888899987421         24589999873 66


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHH
Q 013217          376 TRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       376 ~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      +    ++|++++++.|+++++.
T Consensus       384 t----~~~i~~~~~~l~~~~~~  401 (416)
T 1qz9_A          384 T----FTEVWDAVQILGEILDR  401 (416)
T ss_dssp             C----HHHHHHHHHHHHHHHHH
T ss_pred             C----HHHHHHHHHHHHHHHhc
Confidence            6    99999999999998764

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=99.94  E-value=1.2e-25  Score=223.91  Aligned_cols=346  Identities=11%  Similarity=0.054  Sum_probs=230.3

Q ss_pred             HhhcCeeEecCCCC--CCHHHHHHHhhhhhccC-CCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCC
Q 013217           18 RQFKSLELIASENF--TSRAVMEAVGSCLTNKY-SEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLS   94 (447)
Q Consensus        18 ~~~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~-~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~s   94 (447)
                      ...+.|+|..+++.  +++.+.+++...+.... ..+|+..      .....+++...+++.+.+|.+.+.- -+|.+++
T Consensus        26 ~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~------~g~~~lr~~la~~~~~~~g~~~~~~-~~i~~~~   98 (422)
T 3fvs_A           26 SEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKT------FGYPPLTKILASFFGELLGQEIDPL-RNVLVTV   98 (422)
T ss_dssp             HTSCCEECCCSSCSSCCCHHHHHHHHHHHHSCGGGGSCCCT------TCCHHHHHHHHHHHHHHHTCCCCHH-HHEEEES
T ss_pred             hcCCceEeCCCCCCCCCCHHHHHHHHHHHhCCCccCCCCCC------CCCHHHHHHHHHHHHHhhCCCCCCC-CcEEEEC
Confidence            34577888877764  68999999988876532 1233332      1123455555677888888653210 0233355


Q ss_pred             cH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-----------CCCCCCHHHHH
Q 013217           95 GS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-----------STGLVDYDMLE  162 (447)
Q Consensus        95 Gs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----------~~~~id~~~l~  162 (447)
                      |+ +|+..++.++++|||+|++..|.|.++..        .+...|.  +++.+++++           .++.+|+++++
T Consensus        99 g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~  168 (422)
T 3fvs_A           99 GGYGALFTAFQALVDEGDEVIIIEPFFDCYEP--------MTMMAGG--RPVFVSLKPGPIQNGELGSSSNWQLDPMELA  168 (422)
T ss_dssp             HHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECBCCCCCSSSCCBGGGSBCCHHHHH
T ss_pred             ChHHHHHHHHHHHcCCCCEEEEcCCCchhhHH--------HHHHcCC--EEEEEecccccccccccccccCCCCCHHHHH
Confidence            55 99999999999999999999998876531        2334454  444544543           24568999999


Q ss_pred             HHhhhhCCcEEEEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC------cccEEEeCCC
Q 013217          163 KTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK------YCDVVTTTTH  231 (447)
Q Consensus       163 ~~~~~~~~klii~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~------~~Di~~~s~~  231 (447)
                      +++++ ++++|+++.++||+  ..   ++++|.++|+++|+++|+|++|. ++...+..+.++.      ..++++.|+|
T Consensus       169 ~~~~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~s  246 (422)
T 3fvs_A          169 GKFTS-RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQ-WMVYDGHQHISIASLPGMWERTLTIGSAG  246 (422)
T ss_dssp             TTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT-TCBCTTCCCCCGGGSTTTGGGEEEEEEHH
T ss_pred             hhcCC-CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccch-hhccCCCCCCChhhcccccCcEEEEecch
Confidence            99986 89999988888775  44   58999999999999999999974 3333332221211      2458889999


Q ss_pred             ccc--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHH------hcChhHHHHHHHHHHHHHH
Q 013217          232 KSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH------AQSPEFKVYQNKVVSNCRA  303 (447)
Q Consensus       232 K~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~------~~~~~~~~~~~~~~~~~~~  303 (447)
                      |++  +|.|.|++++++      ++.+.+........ .+++....+++..+++.      .....+++..+++.++++.
T Consensus       247 K~~g~~G~r~G~~~~~~------~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (422)
T 3fvs_A          247 KTFSATGWKVGWVLGPD------HIMKHLRTVHQNSV-FHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDH  319 (422)
T ss_dssp             HHHTCGGGCCEEEECCH------HHHHHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHH
T ss_pred             hccCCccceEEEEEeCH------HHHHHHHHHHhhcc-CCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHH
Confidence            997  467779999987      67666654322222 23455555556666664      1233457788899999999


Q ss_pred             HHHHHHHCCcEeeeCCCCCeeEEecCCCCC--CC----------HHHHHH-HHhhcCeEEccCCCCCCC--CCCCCCeEE
Q 013217          304 LASRLVELGYKLVSGGSDNHLVLVDLRPMG--ID----------GARVEK-ILDMASITLNKNSVPGDK--SALVPGGIR  368 (447)
Q Consensus       304 l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~--~~----------~~~~~~-~L~~~gI~v~~~~~p~~~--~~~~~~~iR  368 (447)
                      +.+.|.+.|+++..+ ...++.|+++...+  .+          ..++.. .|+++||.+..+...+..  .+...+.+|
T Consensus       320 l~~~L~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iR  398 (422)
T 3fvs_A          320 MIRSLQSVGLKPIIP-QGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIR  398 (422)
T ss_dssp             HHHHHHTTTCEEEBC-SBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEE
T ss_pred             HHHHHHHcCCeecCC-CeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEE
Confidence            999999989887654 34566777764211  00          334444 567789998754322110  112356899


Q ss_pred             EecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          369 IGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       369 ig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      +++..  +    ++++++.++.|+++++
T Consensus       399 is~~~--~----~e~i~~~l~~l~~~l~  420 (422)
T 3fvs_A          399 FCFVK--D----EATLQAMDEKLRKWKV  420 (422)
T ss_dssp             EECCC--C----HHHHHHHHHHHHHHHH
T ss_pred             EEecC--C----HHHHHHHHHHHHHHHh
Confidence            99654  4    9999999999988775

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.94  E-value=5.7e-26  Score=223.91  Aligned_cols=331  Identities=14%  Similarity=0.129  Sum_probs=222.7

Q ss_pred             cCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHH
Q 013217           21 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  100 (447)
Q Consensus        21 ~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~  100 (447)
                      +.|+|..  ...|+.+++++...+.+.+   +      ...+...+++    +.+++++|.+.     .+.+++|++|+.
T Consensus         9 ~~i~~~~--p~~~~~~~~a~~~~~~~~~---~------~~~~~~~~l~----~~la~~~~~~~-----~~~~~~gt~al~   68 (393)
T 1mdo_A            9 DFLPFSR--PAMGAEELAAVKTVLDSGW---I------TTGPKNQELE----AAFCRLTGNQY-----AVAVSSATAGMH   68 (393)
T ss_dssp             CCBCSCC--CCCCHHHHHHHHHHHHHTC---C------SSSHHHHHHH----HHHHHHHCCSE-----EEEESCHHHHHH
T ss_pred             cccccCC--CCCCHHHHHHHHHHHhcCC---c------CCChHHHHHH----HHHHHHhCCCc-----EEEecChHHHHH
Confidence            3456543  4478899999988876532   1      1123334444    67888998763     244577889999


Q ss_pred             HHHHHh-cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCC
Q 013217          101 EVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA  179 (447)
Q Consensus       101 ~~~~al-~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~  179 (447)
                      .++.++ ++|||+|++.++.|.++..        .+...|.  +++.++++++++.+|++++++++++ +|++|++++ .
T Consensus        69 ~~~~~~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~-~  136 (393)
T 1mdo_A           69 IALMALGIGEGDEVITPSMTWVSTLN--------MIVLLGA--NPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIPVH-Y  136 (393)
T ss_dssp             HHHHHTTCCTTCEEEEESSSCHHHHH--------HHHHTTC--EEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCBC-G
T ss_pred             HHHHHcCCCCCCEEEeCCCccHhHHH--------HHHHCCC--EEEEEeccCCcCCCCHHHHHHhcCC-CceEEEEeC-C
Confidence            999999 9999999999998877532        2334454  5566667655678999999999986 889988764 2


Q ss_pred             CCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCC--cccCCCCCceEEeecCCcchhhHHHH
Q 013217          180 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESA  257 (447)
Q Consensus       180 ~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~--K~l~Gp~gG~i~~~~~~~~~~~~~~~  257 (447)
                      ++...++++|.++|+++|+++++|++|+.|....+. +...  .|++++|+|  |+++|++||+++++++     ++.++
T Consensus       137 ~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~-~~~~--~d~~~~S~~k~K~l~~~~~g~~~~~~~-----~~~~~  208 (393)
T 1mdo_A          137 AGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGR-HIGA--RGTAIFSFHAIKNITCAEGGIVVTDNP-----QFADK  208 (393)
T ss_dssp             GGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTE-ETTS--SSEEEEECCTTSSSCSSSCEEEEESCH-----HHHHH
T ss_pred             CCCcCCHHHHHHHHHHcCCeEEEECccccCCeECCe-ecCC--CCeEEEeCCCCCccccccceEEEeCCH-----HHHHH
Confidence            334679999999999999999999999877654321 1111  799999999  9998889999998742     56665


Q ss_pred             hhhccCCC--------------------CCCC-CcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEee
Q 013217          258 INNAVFPG--------------------LQGG-PHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLV  316 (447)
Q Consensus       258 i~~~~~~~--------------------~~g~-p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~  316 (447)
                      +......+                    ..|. .....+++ +.++..+  .++++..++..++++++.+.|.+.++++.
T Consensus       209 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-a~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  285 (393)
T 1mdo_A          209 LRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNA-AIALAQL--QKLDALNARRAAIAAQYHQAMADLPFQPL  285 (393)
T ss_dssp             HHHHTBTTEECC-----------CCEESSCCCBCCCCHHHH-HHHHHHH--HTHHHHHHHHHHHHHHHHHHHHTSSCEEC
T ss_pred             HHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence            54321111                    0111 01111211 1122222  23566777888899999999988777764


Q ss_pred             eCC-----CCCeeEEecCCCC--CCCHHHHHHHHhhcCeEEccCCCCCCC----------CCC------CCCeEEEecCc
Q 013217          317 SGG-----SDNHLVLVDLRPM--GIDGARVEKILDMASITLNKNSVPGDK----------SAL------VPGGIRIGSPA  373 (447)
Q Consensus       317 ~~~-----~~~~~~~v~~~~~--~~~~~~~~~~L~~~gI~v~~~~~p~~~----------~~~------~~~~iRig~~~  373 (447)
                      ...     ...+++++.+...  +.+..++.+.|.++||.++.+..|...          ...      ....+|++++.
T Consensus       286 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~  365 (393)
T 1mdo_A          286 SLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFP  365 (393)
T ss_dssp             CCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCT
T ss_pred             cCCCCCCCceeEEEEEEecccccccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCC
Confidence            311     2234567776420  356788999999999999765433100          001      12479999887


Q ss_pred             cccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          374 MTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       374 ~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      .++    ++|+++++++|++++...
T Consensus       366 ~~t----~~~i~~~~~~l~~~~~~~  386 (393)
T 1mdo_A          366 DMT----ESDFDRVITALHQIAGQG  386 (393)
T ss_dssp             TCC----HHHHHHHHHHHHHHHC--
T ss_pred             CCC----HHHHHHHHHHHHHHHhcC
Confidence            777    999999999999887654

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.94  E-value=8.6e-25  Score=220.94  Aligned_cols=300  Identities=16%  Similarity=0.135  Sum_probs=206.4

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh----cCCCC-----EEEEecCCCCcccCCCccccccc
Q 013217           64 IDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI----LKPHD-----RIMGLDLPHGGHLSHGFMTPKRR  134 (447)
Q Consensus        64 ~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al----~~pgd-----~Vl~~~~~~~~~~~~~~~~~~~~  134 (447)
                      ..+++...++++++++|++.    ..+.+++|++|+.+++.++    .++||     +|+++.+.|+++..        .
T Consensus       105 ~~~l~~~l~~~la~~~g~~~----~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~--------~  172 (474)
T 1wyu_B          105 ALRLMWELGEYLKALTGMDA----ITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPA--------T  172 (474)
T ss_dssp             HHHHHHHHHHHHHHHHTCSE----EECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHH--------H
T ss_pred             HHHHHHHHHHHHHHHHCCCc----eeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHH--------H
Confidence            44555667789999999875    2344566778888766554    46888     99999988876542        2


Q ss_pred             cccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC-C-CChHHHHHHHHHhCCEEEEehhhhccccc
Q 013217          135 VSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR-D-FDYPRMRQIADAVGALLMMDMAHISGLVA  212 (447)
Q Consensus       135 ~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~-~-~~~~~i~~ia~~~g~~livD~a~~~g~~~  212 (447)
                      +...|.  +++.++++ +++.+|+++|++++++ ++++|+++.+|+.+ . .++++|+++|+++|+++++|++|..+.. 
T Consensus       173 ~~~~G~--~vv~v~~~-~~~~~d~~~L~~~i~~-~t~~v~~~~pn~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~-  247 (474)
T 1wyu_B          173 ASMAGY--QVREIPSG-PEGEVDLEALKRELGP-HVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIM-  247 (474)
T ss_dssp             HHHTTC--EEEEECBC-TTSSBCHHHHHHHCST-TEEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTT-
T ss_pred             HHHCCC--EEEEecCC-CCCCcCHHHHHHhhCC-CceEEEEECCCCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhc-
Confidence            344554  55566665 4688999999999986 78999998776555 4 5899999999999999999999866543 


Q ss_pred             cccCCCCCC-cccEEEeCCCcccCCC------CCceEEeecCCcchhhHHHHhhhc-c------------CC-----CCC
Q 013217          213 ASVVADPFK-YCDVVTTTTHKSLRGP------RGGMIFFKKDPVLGVELESAINNA-V------------FP-----GLQ  267 (447)
Q Consensus       213 ~~~~~~~~~-~~Di~~~s~~K~l~Gp------~gG~i~~~~~~~~~~~~~~~i~~~-~------------~~-----~~~  267 (447)
                       +.. .+.. ++|++++|+||+|++|      +.|++++++      ++.+.+... .            .+     ...
T Consensus       248 -g~~-~~~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~------~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~  319 (474)
T 1wyu_B          248 -GWA-RPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKA------HLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRS  319 (474)
T ss_dssp             -TTC-CHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECG------GGGGGCCSCEEEECSSCEEEECCCTTCCCCSSS
T ss_pred             -cCC-CcccCCCcEEEEeCccccccCCCCCCCCeEEEEEcH------HHHHhCCCCeeeccCCeeEecccCcccCccccc
Confidence             111 1111 4899999999998755      459999988      554544310 0            00     011


Q ss_pred             CCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcC
Q 013217          268 GGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAS  347 (447)
Q Consensus       268 g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~g  347 (447)
                      ++++...+++....+..+..+++++..++..++++++.+.|++.|+++..++...+.+++++ +.+.+..++.+.|.++|
T Consensus       320 ~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~G  398 (474)
T 1wyu_B          320 FYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGYRVPYDGPSMHEFVAQP-PEGFRALDLAKGLLELG  398 (474)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSCSSCCSCEEEBC-STTCCHHHHHHHHHHTT
T ss_pred             CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcEecCCCCcceEEEEEc-CCCCCHHHHHHHHHHCC
Confidence            22344333333334443333456777889999999999999988887744322223356676 34567788999898889


Q ss_pred             eEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          348 ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       348 I~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      |.+.....|    ....+.+|++++..++    ++|++++++.|++++..
T Consensus       399 i~~~~~~~~----~~~~~~lRis~~~~~t----~e~id~~~~~L~~~~~~  440 (474)
T 1wyu_B          399 FHPPTVYFP----LIVKEALMVEPTETEA----KETLEAFAEAMGALLKK  440 (474)
T ss_dssp             CCCCEESCS----TTSTTCEEECCCTTSC----HHHHHHHHHHHHHHHTS
T ss_pred             ccccccccc----cccCCEEEEEeecCCC----HHHHHHHHHHHHHHHHh
Confidence            975321111    1124679999887777    99999999999988764

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.94  E-value=1.2e-25  Score=222.80  Aligned_cols=339  Identities=16%  Similarity=0.064  Sum_probs=223.3

Q ss_pred             hcCeeEecCCC-----CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeec
Q 013217           20 FKSLELIASEN-----FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQP   92 (447)
Q Consensus        20 ~~~i~l~~~~n-----~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~   92 (447)
                      +..|+|..+++     ..++.+.+++...+.+.+ .+|+..      ....++++...+++.+.+|.+  ++    .|.+
T Consensus        38 ~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~~------~g~~~l~~~la~~l~~~~g~~~~~~----~v~~  106 (406)
T 1xi9_A           38 IKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGH-NYYGDS------EGLPELRKAIVEREKRKNGVDITPD----DVRV  106 (406)
T ss_dssp             CCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTC-CSCCCT------TCCHHHHHHHHHHHHHHHCCCCCGG----GEEE
T ss_pred             CCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCC-CCCCCC------CCcHHHHHHHHHHHHHhcCCCCCHH----HEEE
Confidence            45688877776     457899999988775422 233321      223456655566777766654  33    2333


Q ss_pred             CCc-HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhhCC
Q 013217           93 LSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRP  170 (447)
Q Consensus        93 ~sG-s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~~~  170 (447)
                      ++| ++|+..++.++++|||+|++.++.|.++..        .+...|.  +++.+++++ +++.+|+++|++++++ ++
T Consensus       107 t~g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~~-~~  175 (406)
T 1xi9_A          107 TAAVTEALQLIFGALLDPGDEILVPGPSYPPYTG--------LVKFYGG--KPVEYRTIEEEDWQPDIDDIRKKITD-RT  175 (406)
T ss_dssp             ESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHHTTC--EEEEEEEEGGGTSEECHHHHHHHCCT-TE
T ss_pred             cCChHHHHHHHHHHhCCCCCEEEEcCCCCccHHH--------HHHHcCC--EEEEeecCCCcCCcCCHHHHHHhhCc-Cc
Confidence            555 599999999999999999999998866431        2234454  444555553 3567899999999987 89


Q ss_pred             cEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC----Ccc-cEEEeCCCcccC--CCC
Q 013217          171 KLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF----KYC-DVVTTTTHKSLR--GPR  238 (447)
Q Consensus       171 klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~----~~~-Di~~~s~~K~l~--Gp~  238 (447)
                      ++|+++.++||+  ..+   +++|.++|+++|+++++|++|..+. ..+. ..++    ... |++++|+||+++  |.|
T Consensus       176 ~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~-~~~~-~~~~~~~~~~~~~i~~~s~sK~~~~~G~r  253 (406)
T 1xi9_A          176 KAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMT-YEGE-HISPGSLTKDVPVIVMNGLSKVYFATGWR  253 (406)
T ss_dssp             EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCB-SSSC-CCCHHHHCSSSCEEEEEESTTTTCCGGGC
T ss_pred             eEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccc-cCCC-CCCHHHcCCCceEEEEeccccccCCCccE
Confidence            998888777764  444   8999999999999999999986543 2211 1111    235 789999999984  666


Q ss_pred             CceEE--eecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEe
Q 013217          239 GGMIF--FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKL  315 (447)
Q Consensus       239 gG~i~--~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  315 (447)
                      .|+++  .+++.  ..++.+.+.......  .+++....+++..+++.. ..+.++..+++.++++.+.+.|.+. |+++
T Consensus       254 ~G~~~~~~~~~~--~~~l~~~l~~~~~~~--~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  328 (406)
T 1xi9_A          254 LGYMYFVDPENK--LSEVREAIDRLARIR--LCPNTPAQFAAIAGLTGP-MDYLKEYMKKLKERRDYIYKRLNEIPGIST  328 (406)
T ss_dssp             CEEEEEECTTCT--THHHHHHHHHHHHHT--CCSCSHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHHHHHHHTSTTEEC
T ss_pred             EEEEEEecCchh--HHHHHHHHHHHHHhh--cCCCHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHhCCCCee
Confidence            79988  55410  002444443322111  233444455555566533 3346777888889999999999885 7776


Q ss_pred             eeCCCCCeeEEecCCCC-CCCHHHHHHHHh-hcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217          316 VSGGSDNHLVLVDLRPM-GIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       316 ~~~~~~~~~~~v~~~~~-~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~  393 (447)
                      ..+ ..+.+.|+++... +.+..++.+.|. ++||.+..+...+.   ...+.+|++++  ++    +++++++++.|.+
T Consensus       329 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~---~~~~~lRis~~--~~----~~~i~~~~~~l~~  398 (406)
T 1xi9_A          329 TKP-QGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGE---YGAGHFRAVFL--PP----IEILEEAMDRFEK  398 (406)
T ss_dssp             CCC-CBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCG---GGTTBEEEECC--SC----HHHHHHHHHHHHH
T ss_pred             ecC-CeeEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcCC---CCCCEEEEEec--CC----HHHHHHHHHHHHH
Confidence            543 2345555565431 346777877775 89999865422211   12458999986  44    8999999999988


Q ss_pred             HHHH
Q 013217          394 GVEI  397 (447)
Q Consensus       394 ~l~~  397 (447)
                      +++.
T Consensus       399 ~l~~  402 (406)
T 1xi9_A          399 FMKE  402 (406)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.94  E-value=7e-25  Score=223.99  Aligned_cols=303  Identities=11%  Similarity=0.061  Sum_probs=218.9

Q ss_pred             hHHHHHHHHHHHHHHHHcCCCC--CccceeeecCCcHHHHHHHHHHhcCCC--------CEEEEecCCCCcccCCCcccc
Q 013217           62 EYIDELETLCQKRALAAFNLDE--NKWGVNVQPLSGSPANFEVYTAILKPH--------DRIMGLDLPHGGHLSHGFMTP  131 (447)
Q Consensus        62 ~~~~~le~~~~~~~~~~~g~~~--~~~~~~v~~~sGs~a~~~~~~al~~pg--------d~Vl~~~~~~~~~~~~~~~~~  131 (447)
                      .....+|+..++++++++|++.  +.+ ..+.+++|++|+..++.++.++|        |+|++..+.|.++.       
T Consensus       135 p~~~~le~~l~~~la~~~g~~~~~~~v-~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~-------  206 (514)
T 3mad_A          135 PSTAKFEAEVVAMTAHMLGGDAAGGTV-CGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFD-------  206 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHTTGGGGTSCC-EEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHH-------
T ss_pred             hHHHHHHHHHHHHHHHHcCCCCccCCc-ceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHH-------
Confidence            3456777778889999999883  322 11344666799999999998777        99999998887643       


Q ss_pred             ccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhcc
Q 013217          132 KRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISG  209 (447)
Q Consensus       132 ~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g  209 (447)
                       +.+...|.  +++.+++++ ++.+|+++|++++++ +|++|+++.++|++  ..|+++|.++|+++|+++++|++|..+
T Consensus       207 -~~~~~~G~--~v~~v~~~~-~~~~d~~~Le~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~  281 (514)
T 3mad_A          207 -KAAQYFGI--KLVRTPLDA-DYRADVAAMREAITP-NTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGF  281 (514)
T ss_dssp             -HHHHHHTC--EEEEECBCT-TSCBCHHHHHHHCCT-TEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred             -HHHHHcCC--eeEEeeeCC-CCCCCHHHHHHHhcc-CCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccc
Confidence             13344565  455555663 788999999999987 89999998777754  789999999999999999999998654


Q ss_pred             ccc----ccc----CCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhc----------cCCCCCCCC
Q 013217          210 LVA----ASV----VADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNA----------VFPGLQGGP  270 (447)
Q Consensus       210 ~~~----~~~----~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~----------~~~~~~g~p  270 (447)
                      ...    .+.    ......++|++++|+||++.||.+ |++++++      +........          ..+...|++
T Consensus       282 ~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~gs~  355 (514)
T 3mad_A          282 ILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRR------PDLLHYQYFIAADWPGGLYFSPTFAGSR  355 (514)
T ss_dssp             THHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESS------HHHHTTTCEEESSCTTCSEEESSSCSSC
T ss_pred             cchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEEeC------HHHhccccccccccCCCcccCCccCCCC
Confidence            331    111    011112689999999999766665 9998887      333222110          112335667


Q ss_pred             cHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeE
Q 013217          271 HNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASIT  349 (447)
Q Consensus       271 ~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~  349 (447)
                      +...+++++++++.+...+++++.+++.++++++.+.|.+. |++++.+.  ..++++..  .+.+..++.+.|.++||.
T Consensus       356 ~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~--~~~~~~~~--~~~~~~~l~~~L~~~Gi~  431 (514)
T 3mad_A          356 PGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDP--LWVIAVAS--DELNIYQVMEEMAGRGWR  431 (514)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC--SSEEEEEC--SSSCHHHHHHHHHTTTCB
T ss_pred             chHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC--eEEEEEeC--CCCCHHHHHHHHHhcCCE
Confidence            77767777888887766678889999999999999999984 88877543  33444443  345778899999999998


Q ss_pred             EccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          350 LNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       350 v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      +....        .+..+|++....++   ++++++++++.|++++...
T Consensus       432 v~g~~--------~~~~~Ri~~~~~~~---~~e~i~~~l~~L~~~l~~~  469 (514)
T 3mad_A          432 LNGLH--------RPPAFHVALTLRHT---EPGVVDRFLADLQDAVAQV  469 (514)
T ss_dssp             CEEET--------TTTEEEEECCGGGG---STTHHHHHHHHHHHHHHHH
T ss_pred             eccCC--------CCCeEEEEEecCCC---CHHHHHHHHHHHHHHHHHH
Confidence            73211        13579998775543   3799999999999998754

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.94  E-value=1.8e-25  Score=227.63  Aligned_cols=311  Identities=14%  Similarity=0.073  Sum_probs=208.7

Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCCC-ccceeeecCCcHHHHHHHHHHhcC--------------CCCEEEEecCCCCccc
Q 013217           60 GNEYIDELETLCQKRALAAFNLDEN-KWGVNVQPLSGSPANFEVYTAILK--------------PHDRIMGLDLPHGGHL  124 (447)
Q Consensus        60 g~~~~~~le~~~~~~~~~~~g~~~~-~~~~~v~~~sGs~a~~~~~~al~~--------------pgd~Vl~~~~~~~~~~  124 (447)
                      ..+...++|+.+.+|+++++|++.+ ..  .+.+++||+||..++.++..              |++.|+++...|.+..
T Consensus       129 ~~p~~~~le~~~~~~l~~~~g~~~~~~~--~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~  206 (511)
T 3vp6_A          129 IAPVFVLMEQITLKKMREIVGWSSKDGD--GIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIK  206 (511)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCSSSCE--EEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHH
T ss_pred             cCchHHHHHHHHHHHHHHHhCCCCCCCc--eEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHH
Confidence            3456678999999999999999842 22  34456677999888877643              6789999988776643


Q ss_pred             CCCcccccccccccccee-EEEecccCCCCCCCCHHHHHHHhhhhC-----CcEEEEcCCCCC-C-CCChHHHHHHHHHh
Q 013217          125 SHGFMTPKRRVSGTSIYF-ESMPYRLDESTGLVDYDMLEKTAILFR-----PKLIIAGASAYP-R-DFDYPRMRQIADAV  196 (447)
Q Consensus       125 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~id~~~l~~~~~~~~-----~klii~~~~~~~-~-~~~~~~i~~ia~~~  196 (447)
                              +.+...|.+. +++.++++ +++.+|+++|++++++.+     |++|+++.++++ + ..|+++|+++|++|
T Consensus       207 --------~~~~~~g~g~~~~~~v~~d-~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~  277 (511)
T 3vp6_A          207 --------KAGAALGFGTDNVILIKCN-ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKY  277 (511)
T ss_dssp             --------HHHHHTTSCGGGEEEECBC-TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHH
T ss_pred             --------HHHHHcCCCCCcEEEeecC-CCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHc
Confidence                    2334555422 44455566 468999999999997632     888888755544 3 78999999999999


Q ss_pred             CCEEEEehhhhccccccccCCC---CCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhccCCC-------
Q 013217          197 GALLMMDMAHISGLVAASVVAD---PFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPG-------  265 (447)
Q Consensus       197 g~~livD~a~~~g~~~~~~~~~---~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~~~~~-------  265 (447)
                      |+|+++|++|+.|.+..+.+..   .+.++|++++++||||.+|.| |+++++++     .+.........++       
T Consensus       278 ~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~-----~~~~~~~~~~~~yl~~~~~~  352 (511)
T 3vp6_A          278 NLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEK-----GILQGCNQMHASYLFQQDKH  352 (511)
T ss_dssp             TCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESST-----THHHHHHCCCCTTTCCSSCS
T ss_pred             CCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCH-----HHHHHHhccCCccccCcccc
Confidence            9999999999877664432221   123579999999999998887 88888875     4433321110000       


Q ss_pred             -----------CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEeeeC-CCCCeeEEecCCCC
Q 013217          266 -----------LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSG-GSDNHLVLVDLRPM  332 (447)
Q Consensus       266 -----------~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~-~~~~~~~~v~~~~~  332 (447)
                                 .+++.. ....+++.+++.+...+++++.++..++++++++.|++ .|++++.+ .....++.+.+.+.
T Consensus       353 ~~~~~~~~~~~~~~~r~-~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~  431 (511)
T 3vp6_A          353 YDVSYDTGDKAIQCGRH-VDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQ  431 (511)
T ss_dssp             SCGGGCCGGGSSCSSCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEEECCG
T ss_pred             cccccCccCCCCCCCCc-hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCc
Confidence                       111111 12445666777666677899999999999999999988 49998862 12233334433332


Q ss_pred             CCC---------------HHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEec-CccccCCCCHHHHHHHHHHHHHHH
Q 013217          333 GID---------------GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS-PAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       333 ~~~---------------~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~-~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      +++               ..++.+.|.+.|+.+-. ..|..   ...+.+|+++ +..++    ++|++++++.|.++-
T Consensus       432 ~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~-~~~~~---~~~~~lRi~~~~~~~t----~~di~~ll~~i~~~~  502 (511)
T 3vp6_A          432 SLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVG-YQPQG---DKANFFRMVISNPAAT----QSDIDFLIEEIERLG  502 (511)
T ss_dssp             GGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEE-EEEET---TEEEEEEECCCCTTCC----HHHHHHHHHHHHHHH
T ss_pred             cccccccchhHHHHHHHHHHHHHHHHHhcCCEEEE-EEEeC---CceEEEEEEecCCCCC----HHHHHHHHHHHHHHH
Confidence            221               23577788787864321 11111   0123599998 56666    999999999887653

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=99.94  E-value=7e-25  Score=218.78  Aligned_cols=338  Identities=15%  Similarity=0.091  Sum_probs=224.2

Q ss_pred             cCeeEecCCC------CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC-----CCCCcccee
Q 013217           21 KSLELIASEN------FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN-----LDENKWGVN   89 (447)
Q Consensus        21 ~~i~l~~~~n------~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g-----~~~~~~~~~   89 (447)
                      ..|+|..+..      ++++.|++++...+......+|+..      ....+++    +.++++++     ++++.+   
T Consensus        55 ~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~~------~g~~~lr----~~la~~~~~~~~~~~~~~v---  121 (427)
T 3dyd_A           55 TMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPS------IGFLSSR----EEIASYYHCPEAPLEAKDV---  121 (427)
T ss_dssp             CCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSSSCCCT------TCCHHHH----HHHHHHHCBTTBCCCGGGE---
T ss_pred             CEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCCCCCCC------CCcHHHH----HHHHHHHhhcCCCCChHHE---
Confidence            3488865552      5689999999888765333344332      1123444    45666776     455432   


Q ss_pred             eecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhh
Q 013217           90 VQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILF  168 (447)
Q Consensus        90 v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~  168 (447)
                      +.+++|++|+..++.++++|||+|++..|.|.++..        .+...|.  +++.+++++ +++.+|++++++.+++ 
T Consensus       122 ~~t~g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~l~~-  190 (427)
T 3dyd_A          122 ILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKT--------LAESMGI--EVKLYNLLPEKSWEIDLKQLEYLIDE-  190 (427)
T ss_dssp             EEESSHHHHHHHHHHHHCCTTCEEEEEESCCTHHHH--------HHHHTTC--EEEEEEEEGGGTTEECHHHHHSSCCT-
T ss_pred             EEecCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHH--------HHHHcCC--EEEEEecccccCCCCCHHHHHHHhcc-
Confidence            333455699999999999999999999998876532        2334454  444444543 4568999999999977 


Q ss_pred             CCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC--cc---cEEEeCCCccc--CC
Q 013217          169 RPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YC---DVVTTTTHKSL--RG  236 (447)
Q Consensus       169 ~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~--~~---Di~~~s~~K~l--~G  236 (447)
                      ++++|++..++||+  ..+   +++|+++|+++|+++++|++|. ++...+....++.  ..   .+++.|+||++  +|
T Consensus       191 ~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~-~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G  269 (427)
T 3dyd_A          191 KTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYG-DMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPG  269 (427)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTT-TCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGG
T ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCch-hhccCCCcCccHHHhCCCCcEEEEeeccccCCCcC
Confidence            78988888777775  667   8999999999999999999974 4443332121221  12   26788999974  56


Q ss_pred             CCCceEEeecCCcch-hhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcE
Q 013217          237 PRGGMIFFKKDPVLG-VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYK  314 (447)
Q Consensus       237 p~gG~i~~~~~~~~~-~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  314 (447)
                      .|.|+++++++.... .++.+.+......  ..+++....+++..+++.....++++..+++.++++.+.+.|++. |+.
T Consensus       270 ~riG~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  347 (427)
T 3dyd_A          270 WRLGWILIHDRRDIFGNEIRDGLVKLSQR--ILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLR  347 (427)
T ss_dssp             GCCEEEEEECSTTSSHHHHHHHHHHHHHH--HCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEE
T ss_pred             cceEEEEecCcchhhHHHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence            778999988531100 1344444332111  134566666666667775443456788889999999999999985 887


Q ss_pred             eeeCCCCCeeEEecCCC----CCCCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHH
Q 013217          315 LVSGGSDNHLVLVDLRP----MGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIAD  389 (447)
Q Consensus       315 ~~~~~~~~~~~~v~~~~----~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~  389 (447)
                      ++.+ ....++|+.+..    .+.+..++.+.| +++||.+..+..++     .++.+|+++.  ++    +++++++++
T Consensus       348 ~~~p-~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~-----~~~~iRis~~--~~----~e~i~~~l~  415 (427)
T 3dyd_A          348 PVRP-SGAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFE-----YPNFIRVVIT--VP----EVMMLEACS  415 (427)
T ss_dssp             EECC-SBTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGT-----CTTEEEEESC--SC----HHHHHHHHH
T ss_pred             ecCC-CeeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccC-----CCCeEEEEEC--CC----HHHHHHHHH
Confidence            7644 334556665531    124556666655 68999996543222     2468999964  34    899999999


Q ss_pred             HHHHHHHH
Q 013217          390 FIHEGVEI  397 (447)
Q Consensus       390 ~i~~~l~~  397 (447)
                      .|.++++.
T Consensus       416 ~l~~~l~~  423 (427)
T 3dyd_A          416 RIQEFCEQ  423 (427)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.94  E-value=7.9e-26  Score=223.63  Aligned_cols=330  Identities=18%  Similarity=0.143  Sum_probs=219.6

Q ss_pred             cCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHH
Q 013217           21 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  100 (447)
Q Consensus        21 ~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~  100 (447)
                      ..|+|..+++..++.+++++.+.+.+.        +| ...+...+++    +.+++++|.+.     .+.+++|++|+.
T Consensus        31 ~~id~~~~~~~~~~~v~~a~~~~~~~~--------~y-~~~~~~~~l~----~~la~~~~~~~-----~v~~~~Gt~a~~   92 (399)
T 2oga_A           31 PFLDLKAAYEELRAETDAAIARVLDSG--------RY-LLGPELEGFE----AEFAAYCETDH-----AVGVNSGMDALQ   92 (399)
T ss_dssp             CSCCHHHHHHHTHHHHHHHHHHHHHHT--------CC-SSSHHHHHHH----HHHHHHTTSSE-----EEEESCHHHHHH
T ss_pred             cccccCcCCCCCCHHHHHHHHHHHhcC--------CC-CCchhHHHHH----HHHHHHHCCCe-----EEEecCHHHHHH
Confidence            457777777777799999998877541        11 1123334444    67889999862     355688999999


Q ss_pred             HHHHHh-cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCC
Q 013217          101 EVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA  179 (447)
Q Consensus       101 ~~~~al-~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~  179 (447)
                      .++.++ ++|||+|++.++.|.++..        .+...|.  +++.++++++++.+|++++++++++ ++++|+++++ 
T Consensus        93 ~~l~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~n~-  160 (399)
T 2oga_A           93 LALRGLGIGPGDEVIVPSHTYIASWL--------AVSATGA--TPVPVEPHEDHPTLDPLLVEKAITP-RTRALLPVHL-  160 (399)
T ss_dssp             HHHHHTTCCTTCEEEEESSSCTHHHH--------HHHHTTC--EEEEECBCSSSSSBCHHHHHHHCCT-TEEEECCBCG-
T ss_pred             HHHHHhCCCCcCEEEECCCccHHHHH--------HHHHCCC--EEEEEecCCCCCCcCHHHHHHhcCC-CCeEEEEeCC-
Confidence            999999 8999999999998876532        2334454  5556666655678999999999987 7888876432 


Q ss_pred             CCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-cccEEEeCC--CcccCCC-CCceEEeecCCcchhhHH
Q 013217          180 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTT--HKSLRGP-RGGMIFFKKDPVLGVELE  255 (447)
Q Consensus       180 ~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-~~Di~~~s~--~K~l~Gp-~gG~i~~~~~~~~~~~~~  255 (447)
                      ++...|+++|.++|+++|+++|+|++|+.|....+. .  +. ..|++++|+  +|+++++ +||+++++++     ++.
T Consensus       161 tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~-~--~~~~~di~~~S~~~sK~~~~~G~~g~~~~~~~-----~~~  232 (399)
T 2oga_A          161 YGHPADMDALRELADRHGLHIVEDAAQAHGARYRGR-R--IGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDP-----ELA  232 (399)
T ss_dssp             GGCCCCHHHHHHHHHHHTCEECEECTTCTTCEETTE-E--TTCTTCEEEEECCTTSSSCCSSCCEEEEESCH-----HHH
T ss_pred             cCCccCHHHHHHHHHHcCCEEEEECcccccCccCCe-e--cccccCEEEEeCCCCccCCcCCceEEEEeCCH-----HHH
Confidence            233779999999999999999999999777543221 1  11 269999999  4998653 7899888743     666


Q ss_pred             HHhhhccCCC-----------CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCCCCe
Q 013217          256 SAINNAVFPG-----------LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNH  323 (447)
Q Consensus       256 ~~i~~~~~~~-----------~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~  323 (447)
                      +++......+           ...+++....++...+++.     +++..++..++++++.+.|.+. |+++...+....
T Consensus       233 ~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~  307 (399)
T 2oga_A          233 ERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAH-----LDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTD  307 (399)
T ss_dssp             HHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHT-----HHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEE
T ss_pred             HHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCc
Confidence            6554422221           1113344444433334432     3455677778888888888874 776643222222


Q ss_pred             eEEecCCCCCCCHHHHHHHHhhcCeEEccCC-CCCCC-----------CCC------CCCeEEEecCccccCCCCHHHHH
Q 013217          324 LVLVDLRPMGIDGARVEKILDMASITLNKNS-VPGDK-----------SAL------VPGGIRIGSPAMTTRGFSEKEFV  385 (447)
Q Consensus       324 ~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~-~p~~~-----------~~~------~~~~iRig~~~~~~~g~~~~di~  385 (447)
                      ..|+.+.....+..++.+.|.++||.++..+ .|.+.           ...      ..+.+|++++..++    ++|++
T Consensus       308 ~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t----~edi~  383 (399)
T 2oga_A          308 PVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLE----RPQAL  383 (399)
T ss_dssp             CCCSSEEEECSSHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCC----HHHHH
T ss_pred             ceeEEEEEECCCHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCC----HHHHH
Confidence            2222221112257789999999999987532 11000           000      01479999888777    99999


Q ss_pred             HHHHHHHHHHHH
Q 013217          386 AIADFIHEGVEI  397 (447)
Q Consensus       386 ~l~~~i~~~l~~  397 (447)
                      +++++|++++..
T Consensus       384 ~~~~~l~~~~~~  395 (399)
T 2oga_A          384 RVIDAVREWAER  395 (399)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHH
Confidence            999999988763

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=99.94  E-value=9.8e-26  Score=223.33  Aligned_cols=335  Identities=15%  Similarity=0.103  Sum_probs=224.7

Q ss_pred             cCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--C-CccceeeecCCc
Q 013217           21 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--E-NKWGVNVQPLSG   95 (447)
Q Consensus        21 ~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~-~~~~~~v~~~sG   95 (447)
                      ..|+|..+++.  .++.+++++.+.+.+....+|+..      ....++++...+++++.+|.+  + +.    |.+++|
T Consensus        48 ~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~------~g~~~lr~~ia~~~~~~~g~~~~~~~~----v~~t~G  117 (404)
T 2o1b_A           48 PLINMAVGIPDGPTPQGIIDHFQKALTIPENQKYGAF------HGKEAFKQAIVDFYQRQYNVTLDKEDE----VCILYG  117 (404)
T ss_dssp             CCEECCCCSCSSCCCHHHHHHHHHHTTCHHHHSCCCT------TCCHHHHHHHHHHHHHHHCCCCCTTTS----EEEESS
T ss_pred             CEEecCCcCCCCCCCHHHHHHHHHHHhCCCCCCCCCC------CCCHHHHHHHHHHHHHHhCCCCCCccc----EEEcCC
Confidence            35788777774  478999999887643111133321      112456655556777777975  2 32    333555


Q ss_pred             -HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEE
Q 013217           96 -SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII  174 (447)
Q Consensus        96 -s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii  174 (447)
                       ++|+..++.++++|||+|++..|.|.++..        .+...|.  +++.++++++++.+|+++|++++++ ++++|+
T Consensus       118 ~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~  186 (404)
T 2o1b_A          118 TKNGLVAVPTCVINPGDYVLLPDPGYTDYLA--------GVLLADG--KPVPLNLEPPHYLPDWSKVDSQIID-KTKLIY  186 (404)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEEESCCSSHHH--------HHHHTTC--EEEEEECCTTTCCCCGGGSCHHHHH-HEEEEE
T ss_pred             cHHHHHHHHHHhcCCCCEEEEcCCCchhHHH--------HHHHCCC--EEEEeccCcccCcCCHHHHHHhhcc-CceEEE
Confidence             589999999999999999999998876532        2234454  5555556544456899999998875 789999


Q ss_pred             EcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCC--CCC---cccEEEeCCCccc--CCCCCceE
Q 013217          175 AGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFK---YCDVVTTTTHKSL--RGPRGGMI  242 (447)
Q Consensus       175 ~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~--~~~---~~Di~~~s~~K~l--~Gp~gG~i  242 (447)
                      ++.++||+  ..+   +++|.++|+++|+++|+|++|..+ ...+...+  .+.   ..+++++|+||++  +|.|.|++
T Consensus       187 l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~  265 (404)
T 2o1b_A          187 LTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAF-GFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFA  265 (404)
T ss_dssp             ECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTC-BSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEE
T ss_pred             EcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhc-ccCCCCCChhhcCCCCCCEEEEEecchhccCchhheEeE
Confidence            98777765  444   688999999999999999998543 32221111  111   3568999999998  46677999


Q ss_pred             EeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCC
Q 013217          243 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDN  322 (447)
Q Consensus       243 ~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~  322 (447)
                      ++++      ++.+.+....... .++++....+++..+++.. ...+++..+++.++++.+.+.|++.|+++..+ ..+
T Consensus       266 ~~~~------~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~g  336 (404)
T 2o1b_A          266 VGNK------DMIQALKKYQTHT-NAGMFGALQDAAIYALNHY-DDFLEEQSNVFKTRRDRFEAMLAKADLPFVHA-KGG  336 (404)
T ss_dssp             EECH------HHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCEECC-CBS
T ss_pred             ecCH------HHHHHHHHHHhhc-cCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHhcCCeecCC-Ccc
Confidence            9877      6776665432211 1234555555555566653 23456777888899999999999888877643 335


Q ss_pred             eeEEecCCCCCCCHHHHHHHHh-hcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          323 HLVLVDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       323 ~~~~v~~~~~~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      .++|+++. .+.+..++.+.|. ++||.+..+..++.   ..++.+|++++.  +    +++++++++.|.++++
T Consensus       337 ~~~~~~~~-~~~~~~~l~~~l~~~~gi~v~~g~~f~~---~~~~~iRis~~~--~----~e~l~~~l~~l~~~l~  401 (404)
T 2o1b_A          337 IYVWLETP-PGYDSEQFEQFLVQEKSILVAPGKPFGE---NGNRYVRISLAL--D----DQKLDEAAIRLTELAY  401 (404)
T ss_dssp             SEEEEECC-TTCCHHHHHHHHHHHHCEECEESGGGCG---GGTTEEEEECCS--C----TTHHHHHHHHHHGGGG
T ss_pred             eEEEEeCC-CCCCHHHHHHHHHHHCCEEEeCchhhCc---CCCCeEEEEEcC--C----HHHHHHHHHHHHHHHH
Confidence            55777775 3456677777664 68999975432211   124689999874  3    6789988888877654

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=99.94  E-value=2.4e-25  Score=221.02  Aligned_cols=342  Identities=14%  Similarity=0.091  Sum_probs=225.8

Q ss_pred             HhhcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CC-ccceeeec
Q 013217           18 RQFKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--EN-KWGVNVQP   92 (447)
Q Consensus        18 ~~~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~-~~~~~v~~   92 (447)
                      +....|+|..+++.  .++.+.+++.+.+.+. ..+|+..      ....++++...+++.+.+|.+  ++ .+    .+
T Consensus        23 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~------~g~~~l~~~la~~~~~~~g~~~~~~~~v----~~   91 (411)
T 2o0r_A           23 TRIGAVNLGQGFPDEDGPPKMLQAAQDAIAGG-VNQYPPG------PGSAPLRRAIAAQRRRHFGVDYDPETEV----LV   91 (411)
T ss_dssp             HTTTCEESSCSSCSSCCCHHHHHHHHHHHHTT-CCSCCCT------TCCHHHHHHHHHHHHHHHCCCCCTTTSE----EE
T ss_pred             hcCCeeeccCcCCCCCCCHHHHHHHHHHHhcC-CCCCCCC------CCCHHHHHHHHHHHHHHcCCCCCCCceE----EE
Confidence            34467888777664  5789999998887642 1233322      112456666667777777854  33 32    23


Q ss_pred             CCc-HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC--CCCCCHHHHHHHhhhhC
Q 013217           93 LSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES--TGLVDYDMLEKTAILFR  169 (447)
Q Consensus        93 ~sG-s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~id~~~l~~~~~~~~  169 (447)
                      ++| ++|+..++.++++|||+|++.++.|.++..        .+...|.  +++.++++++  ++.+|+++|++++++ +
T Consensus        92 t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~~d~~~l~~~l~~-~  160 (411)
T 2o0r_A           92 TVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSP--------VVAMAGA--HRVTVPLVPDGRGFALDADALRRAVTP-R  160 (411)
T ss_dssp             EEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECEEETTEEECCHHHHHHHCCT-T
T ss_pred             eCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHH--------HHHHcCC--EEEEeeccccccCCCCCHHHHHHhhcc-C
Confidence            555 589999999999999999999998877531        2334454  4445545432  456999999999976 8


Q ss_pred             CcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC------CcccEEEeCCCcccC--C
Q 013217          170 PKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF------KYCDVVTTTTHKSLR--G  236 (447)
Q Consensus       170 ~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~------~~~Di~~~s~~K~l~--G  236 (447)
                      |++|+++.++||+  ..+   +++|.++|+++|+++|+|++|+.+ ...+..+.++      ...|++++|+||+++  |
T Consensus       161 ~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G  239 (411)
T 2o0r_A          161 TRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHL-VFDHARHLPLAGFDGMAERTITISSAAKMFNCTG  239 (411)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTC-BCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTT
T ss_pred             ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCCCCCcChhhccCCCCCEEEEeechhhcCCcc
Confidence            9999988777765  444   589999999999999999998543 3222111111      246899999999874  5


Q ss_pred             CCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEee
Q 013217          237 PRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLV  316 (447)
Q Consensus       237 p~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~  316 (447)
                      .|.|++++++      ++.+.+.........+. +....+++..+++.. ...+++..+++.++++.+.+.|.+.|+++.
T Consensus       240 ~r~G~~~~~~------~~~~~l~~~~~~~~~~~-~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~  311 (411)
T 2o0r_A          240 WKIGWACGPA------ELIAGVRAAKQYLSYVG-GAPFQPAVALALDTE-DAWVAALRNSLRARRDRLAAGLTEIGFAVH  311 (411)
T ss_dssp             TCEEEEECCH------HHHHHHHHHHHHHTSCC-CTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHTCEEC
T ss_pred             ceEEEEeeCH------HHHHHHHHHHhhccCCC-ChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHHcCCEec
Confidence            6679999976      67666654321111122 223344455566643 234577788888999999999988888876


Q ss_pred             eCCCCCeeEEecCCCC-CCCHHHHHHHH-hhcCeEEccCCCCCCCC--------CCCCCeEEEecCccccCCCCHHHHHH
Q 013217          317 SGGSDNHLVLVDLRPM-GIDGARVEKIL-DMASITLNKNSVPGDKS--------ALVPGGIRIGSPAMTTRGFSEKEFVA  386 (447)
Q Consensus       317 ~~~~~~~~~~v~~~~~-~~~~~~~~~~L-~~~gI~v~~~~~p~~~~--------~~~~~~iRig~~~~~~~g~~~~di~~  386 (447)
                      .+ ..++++|+++... +.+..++.+.| +++||.+..+.......        +...+.+|+++.  ++    ++|+++
T Consensus       312 ~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~--~~----~e~i~~  384 (411)
T 2o0r_A          312 DS-YGTYFLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC--KR----DDTLDE  384 (411)
T ss_dssp             CC-CBSSEEEEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECC--SC----HHHHHH
T ss_pred             CC-CeeEEEEEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEec--CC----HHHHHH
Confidence            53 3355677777532 14567777766 57899986542210100        002457999974  24    899999


Q ss_pred             HHHHHHHHHHH
Q 013217          387 IADFIHEGVEI  397 (447)
Q Consensus       387 l~~~i~~~l~~  397 (447)
                      +++.|+++++.
T Consensus       385 ~~~~l~~~~~~  395 (411)
T 2o0r_A          385 AIRRLSVLAER  395 (411)
T ss_dssp             HHHHHGGGGC-
T ss_pred             HHHHHHHHHhc
Confidence            99999876654

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.94  E-value=1.6e-26  Score=226.36  Aligned_cols=328  Identities=12%  Similarity=0.085  Sum_probs=217.1

Q ss_pred             CeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHH
Q 013217           22 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE  101 (447)
Q Consensus        22 ~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~  101 (447)
                      .+++-.+.+..++ +++++...+....         |...+...+++    +.+++++|.+.     .+.+++|++|+..
T Consensus         8 ~~~l~~~~~~~~~-~~~~~~~~~~~~~---------~~~~~~~~~l~----~~la~~~~~~~-----~~~~~~gt~a~~~   68 (374)
T 3uwc_A            8 YSYLERQFADIEP-YLNDLREFIKTAD---------FTLGAELEKFE----KRFAALHNAPH-----AIGVGTGTDALAM   68 (374)
T ss_dssp             SCCHHHHTSSCHH-HHHHHHHHHHHTC---------CSSCHHHHHHH----HHHHHHTTCSE-----EEEESCHHHHHHH
T ss_pred             eeccccCCCCchH-HHHHHHHHHHcCC---------cccChhHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHH
Confidence            4555566666777 8898887776521         12233344554    68889999873     3556889999999


Q ss_pred             HHHHh-cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCC
Q 013217          102 VYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY  180 (447)
Q Consensus       102 ~~~al-~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~  180 (447)
                      ++.++ ++|||+|++..+.|.++..        .+...|.  +++.++++ +++.+|++++++++++ ++++|+.++ .+
T Consensus        69 ~~~~~~~~~gd~v~~~~~~~~~~~~--------~~~~~g~--~~~~~~~~-~~~~~d~~~l~~~~~~-~~~~v~~~n-~~  135 (374)
T 3uwc_A           69 SFKMLNIGAGDEVITCANTFIASVG--------AIVQAGA--TPVLVDSE-NGYVIDPEKIEAAITD-KTKAIMPVH-YT  135 (374)
T ss_dssp             HHHHTTCCTTCEEEEESSSCHHHHH--------HHHHTTC--EEEEECBC-TTSSBCGGGTGGGCCT-TEEEECCBC-GG
T ss_pred             HHHHcCCCCCCEEEECCCccHHHHH--------HHHHcCC--EEEEEecC-CCCCcCHHHHHHhCCC-CceEEEEeC-Cc
Confidence            99999 9999999999998877532        2334454  55566666 5788999999999887 788887321 12


Q ss_pred             CCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCC--cccCC-CCCceEEeecCCcchhhHHHH
Q 013217          181 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTH--KSLRG-PRGGMIFFKKDPVLGVELESA  257 (447)
Q Consensus       181 ~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~--K~l~G-p~gG~i~~~~~~~~~~~~~~~  257 (447)
                      +...|+++|.++|+++|+++++|++|+.|....+....  ...|++++|+|  |++++ +.||+++++++     ++.+.
T Consensus       136 G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~~--~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~-----~~~~~  208 (374)
T 3uwc_A          136 GNIADMPALAKIAKKHNLHIVEDACQTILGRINDKFVG--SWGQFACFSLHPLKNLNVWSDAGVIITHSD-----EYAEK  208 (374)
T ss_dssp             GCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETT--SSSSEEEEECSSSSSSCCSSCCEEEEESCH-----HHHHH
T ss_pred             CCcCCHHHHHHHHHHcCCEEEEeCCCccCceeCCeecc--ccccEEEEeCCCCCcCCccceeEEEEeCCH-----HHHHH
Confidence            23779999999999999999999999877553221111  13699999987  99977 46788888763     56555


Q ss_pred             hhhccCCCC-------CCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCC--cEeeeCCCCC----ee
Q 013217          258 INNAVFPGL-------QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG--YKLVSGGSDN----HL  324 (447)
Q Consensus       258 i~~~~~~~~-------~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~~~~~~~~~----~~  324 (447)
                      +......+.       ..+.+. .+.++.+++......+++++.++..++++.+.+.|.+.+  +++.......    +.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  287 (374)
T 3uwc_A          209 LRLYRNHGLINRDVCVEYGINC-RMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHI  287 (374)
T ss_dssp             HHHHTBTTEEETTEESSCCCBC-BCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSS
T ss_pred             HHHHHhcCccccCccccccccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEE
Confidence            543221110       011111 111222233333334567788888899999999998854  6654321111    11


Q ss_pred             EEecCCCCCCCHHHHHHHHhhcCeEEccCC-CCCCCCC-C----------------CCCeEEEecCccccCCCCHHHHHH
Q 013217          325 VLVDLRPMGIDGARVEKILDMASITLNKNS-VPGDKSA-L----------------VPGGIRIGSPAMTTRGFSEKEFVA  386 (447)
Q Consensus       325 ~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~-~p~~~~~-~----------------~~~~iRig~~~~~~~g~~~~di~~  386 (447)
                      +.+..    .+..++.+.|.++||.++... .|....+ +                ....+|++++..++    ++||++
T Consensus       288 ~~~~~----~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t----~edi~~  359 (374)
T 3uwc_A          288 YVLRV----KYRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLT----EEEINY  359 (374)
T ss_dssp             EEEEE----TTHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSC----HHHHHH
T ss_pred             EEEEc----CCHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCC----HHHHHH
Confidence            22221    256789999999999987653 1111100 0                01579999988887    999999


Q ss_pred             HHHHHHHHHHH
Q 013217          387 IADFIHEGVEI  397 (447)
Q Consensus       387 l~~~i~~~l~~  397 (447)
                      +++.|+++++.
T Consensus       360 ~~~~l~~~l~~  370 (374)
T 3uwc_A          360 IIKKVREFYLE  370 (374)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998863

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.94  E-value=5.6e-26  Score=224.81  Aligned_cols=307  Identities=14%  Similarity=0.088  Sum_probs=207.0

Q ss_pred             CHHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhc--cC--CCCCCCCcccCchhHHHHHHHHHHHHHHHHcC
Q 013217            5 NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTN--KY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFN   80 (447)
Q Consensus         5 ~~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~--~~--~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g   80 (447)
                      ..++++-+.+|.++|...++.++++|.  +.|++++......  .+  ..||...     ....+.+|    +++++++|
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~a~~n~--~~Vl~A~~~~~~~~~~~~~~~gy~y~-----~~~~~~Le----~~lA~l~g   87 (427)
T 3i16_A           19 VLKLYETAMNDIQNQFKILDDIREFNQ--LKVLNAFQEERISEAHFTNSSGYGYG-----DIGRDSLD----AVYARVFN   87 (427)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHHH--HHHHHHHHHTTCCGGGSCCCCTTCTT-----CHHHHHHH----HHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHHhchhHHhcCCCCCCCCC-----HHHHHHHH----HHHHHHhC
Confidence            456777778888999899999999996  7899998764321  11  1233222     22356666    57999999


Q ss_pred             CCCCccceeee--cCCcHHHHHHHHHHhcCCCCEEEEec-CCCCcccCCC-cccc--ccccccccceeEEEecccCCCCC
Q 013217           81 LDENKWGVNVQ--PLSGSPANFEVYTAILKPHDRIMGLD-LPHGGHLSHG-FMTP--KRRVSGTSIYFESMPYRLDESTG  154 (447)
Q Consensus        81 ~~~~~~~~~v~--~~sGs~a~~~~~~al~~pgd~Vl~~~-~~~~~~~~~~-~~~~--~~~~~~~g~~~~~~~~~~~~~~~  154 (447)
                      ++.    .+++  ++||++||..++.++++|||+|++.+ +.|+++.... ....  ...+...|  ++++.++++ +++
T Consensus        88 ~e~----alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G--~~~~~v~~~-~~g  160 (427)
T 3i16_A           88 TES----ALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFG--INYKQVDLK-EDG  160 (427)
T ss_dssp             CSE----EEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGT--CEEEECCCC-TTS
T ss_pred             Ccc----eEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcC--CEEEEecCc-cCC
Confidence            986    3343  68999999999999999999999998 7777653100 0000  00122334  355666665 457


Q ss_pred             CCCHHHHHHHhhh-hCCcEEEEcC----CCCCC--CCChHHHHHHHHH--hCCEEEEehhhhccccccccCCCCCC-ccc
Q 013217          155 LVDYDMLEKTAIL-FRPKLIIAGA----SAYPR--DFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK-YCD  224 (447)
Q Consensus       155 ~id~~~l~~~~~~-~~~klii~~~----~~~~~--~~~~~~i~~ia~~--~g~~livD~a~~~g~~~~~~~~~~~~-~~D  224 (447)
                      .+|++++++++++ .+||+|+++.    ++|++  ..|+++|+++|++  +|+++++|++|..+...    ..|.. ++|
T Consensus       161 ~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~~~~----~~p~~~gaD  236 (427)
T 3i16_A          161 KPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDT----KEPTDVGAD  236 (427)
T ss_dssp             SCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTTSSS----SCGGGGTCS
T ss_pred             CcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCcccccc----CCccccCCe
Confidence            8999999999983 3899999986    66664  5689999999999  99999999998765421    22333 589


Q ss_pred             EEEeCCCcccCC---CCCceEEeecCCcchhhHHHHhhhcc-CCCCC--CCCcHHHHHHHHHHHHHhcChhHHHHHHHHH
Q 013217          225 VVTTTTHKSLRG---PRGGMIFFKKDPVLGVELESAINNAV-FPGLQ--GGPHNHTIGGLAVCLKHAQSPEFKVYQNKVV  298 (447)
Q Consensus       225 i~~~s~~K~l~G---p~gG~i~~~~~~~~~~~~~~~i~~~~-~~~~~--g~p~~~~~aal~~al~~~~~~~~~~~~~~~~  298 (447)
                      ++++|+||+++|   ++||++++++      ++.+++.... .++..  .+|...   +...+++.+.  ....++++..
T Consensus       237 iv~~S~sK~lgg~g~~~gG~i~~~~------~li~~l~~~~~~~~~g~~~~~~~~---~a~~~l~gl~--~~~~r~~~~~  305 (427)
T 3i16_A          237 LIAGSLIKNIGGGIAPTGGYLAGTK------DCIEKTSYRLTVPGIGGECGSTFG---VVRSMYQGLF--LAPHISMEAL  305 (427)
T ss_dssp             EEEEETTSGGGTTTCCSCEEEEECH------HHHHHHHHHHSCTTTGGGCCCCTT---CHHHHHHHHH--HHHHHHHHHH
T ss_pred             EEEecCcccCCCCCCceEEEEEECH------HHHHHHHHhcccCccCccCCccHH---HHHHHHHHHH--HHHHHHHHHH
Confidence            999999999987   8899999987      7887776532 22221  122111   0112232221  2356789999


Q ss_pred             HHHHHHHHHHHHCCcEeeeCCCCCe-----eEEecCCCCCCCHHHHHHHHhhcC
Q 013217          299 SNCRALASRLVELGYKLVSGGSDNH-----LVLVDLRPMGIDGARVEKILDMAS  347 (447)
Q Consensus       299 ~~~~~l~~~L~~~g~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~L~~~g  347 (447)
                      +++..+++.|++.|+++.++  .++     ++.+.+... .....+.+.|+...
T Consensus       306 ~~a~~la~~L~~~g~~V~p~--~~~~~~~~i~~i~l~~~-~~~~~f~~~l~~~~  356 (427)
T 3i16_A          306 KGAILCSRIMELAGFEVMPK--YDEKRSDIIQSIKFNDK-DKLIEFCKGIQTGS  356 (427)
T ss_dssp             HHHHHHHHHHHHTTCEEESC--TTSCCSSSCEEEECSSH-HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhCCCeecCC--CCCCCccEEEEEEECCH-HHHHHHHHHHhhcC
Confidence            99999999999999988543  233     444555311 11234555666554

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.94  E-value=1.9e-25  Score=216.40  Aligned_cols=324  Identities=18%  Similarity=0.176  Sum_probs=207.5

Q ss_pred             CeeEecCCCC-CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHH
Q 013217           22 SLELIASENF-TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  100 (447)
Q Consensus        22 ~i~l~~~~n~-~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~  100 (447)
                      .|.|..+++. .++.+++++.......        ..|+......+++    +++++++|.+.     .+.+++|++|+.
T Consensus         5 ~i~~~~~~~~~p~~~~~~a~~~~~~~~--------~~y~~~~~~~~l~----~~la~~~g~~~-----~~~~~~gt~a~~   67 (347)
T 1jg8_A            5 MIDLRSDTVTKPTEEMRKAMAQAEVGD--------DVYGEDPTINELE----RLAAETFGKEA-----ALFVPSGTMGNQ   67 (347)
T ss_dssp             CEECSCGGGCCCCHHHHHHHHTCCCCC--------GGGTCCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHH
T ss_pred             EEEeccccCCCCCHHHHHHHhcCCCCC--------cccCCChHHHHHH----HHHHHHhCCce-----EEEecCcHHHHH
Confidence            4667677764 5688888886543211        1123333444555    67888999863     344688999999


Q ss_pred             HHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh-----CCcEEEE
Q 013217          101 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIA  175 (447)
Q Consensus       101 ~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~-----~~klii~  175 (447)
                      .++.++++|||+|++.++.|.+.+...     ..+...|.  +++.+ .+ +++.+|++++++++++.     +|++|++
T Consensus        68 ~~~~~~~~~gd~Vl~~~~~~~~~~~~~-----~~~~~~g~--~~~~v-~~-~~~~~d~~~l~~~i~~~~~~~~~~~~v~~  138 (347)
T 1jg8_A           68 VSIMAHTQRGDEVILEADSHIFWYEVG-----AMAVLSGV--MPHPV-PG-KNGAMDPDDVRKAIRPRNIHFPRTSLIAI  138 (347)
T ss_dssp             HHHHHHCCTTCEEEEETTCHHHHSSTT-----HHHHHTCC--EEEEE-CE-ETTEECHHHHHHHSCCSCTTSCCEEEEEE
T ss_pred             HHHHHhcCCCCEEEEcCcchhhhcccc-----chhhccCe--EEEEe-cC-CCCccCHHHHHHHhccccccccCceEEEE
Confidence            999999999999999998876543211     01223444  44554 32 45678999999998752     6889988


Q ss_pred             cCCCCC--C-CCC---hHHHHHHHHHhCCEEEEehhhhcccc-ccccCCCCC-CcccEEEeCCCcccCCCCCceEEeecC
Q 013217          176 GASAYP--R-DFD---YPRMRQIADAVGALLMMDMAHISGLV-AASVVADPF-KYCDVVTTTTHKSLRGPRGGMIFFKKD  247 (447)
Q Consensus       176 ~~~~~~--~-~~~---~~~i~~ia~~~g~~livD~a~~~g~~-~~~~~~~~~-~~~Di~~~s~~K~l~Gp~gG~i~~~~~  247 (447)
                      ++++||  + ..+   +++|.++|+++|+++++|++|..+.. ..+....++ .++|.+++|+||++++|.||+++.++ 
T Consensus       139 ~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G~~~~~~~-  217 (347)
T 1jg8_A          139 ENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDR-  217 (347)
T ss_dssp             ESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECH-
T ss_pred             eccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCCCceEEEEcCH-
Confidence            877765  3 444   57889999999999999998754321 112111111 14788888999999887666666665 


Q ss_pred             CcchhhHHHHhhhccCCCCCCCC--cHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeE
Q 013217          248 PVLGVELESAINNAVFPGLQGGP--HNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLV  325 (447)
Q Consensus       248 ~~~~~~~~~~i~~~~~~~~~g~p--~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~  325 (447)
                           ++.+++....... .++.  .....++...+++.... .    .++..++++.+.+.|++.|+++.......+++
T Consensus       218 -----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~-~----~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~  286 (347)
T 1jg8_A          218 -----DFIERARKARKML-GGGMRQAGVLAAAGIIALTKMVD-R----LKEDHENARFLALKLKEIGYSVNPEDVKTNMV  286 (347)
T ss_dssp             -----HHHHHHHHHHHHH-TCCCSSTHHHHHHHHHHHHHSST-T----HHHHHHHHHHHHHHHHHHTCBCCGGGCCSSEE
T ss_pred             -----HHHHHHHHHHHHc-CCchhHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHhcCceeccCCCcceEE
Confidence                 5655543211110 1111  11111122234544321 2    33445677888888887777653222334567


Q ss_pred             EecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          326 LVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       326 ~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      |+.+...+.+..++.+.|.++||.++..         ..+.+|++++..++    ++|++++++.|+++++
T Consensus       287 ~~~~~~~~~~~~~~~~~l~~~gi~v~~~---------~~~~iRl~~~~~~~----~e~i~~~~~~l~~~l~  344 (347)
T 1jg8_A          287 ILRTDNLKVNAHGFIEALRNSGVLANAV---------SDTEIRLVTHKDVS----RNDIEEALNIFEKLFR  344 (347)
T ss_dssp             EEECTTSSSCHHHHHHHHHHHTEECEEE---------ETTEEEEECCTTSC----HHHHHHHHHHHHHHHH
T ss_pred             EEEcccccCCHHHHHHHHHHCCCEEecC---------CCCeEEEEeCCCCC----HHHHHHHHHHHHHHHH
Confidence            7777533456788988888899998632         13579999876666    9999999999998875

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.94  E-value=6.4e-27  Score=229.26  Aligned_cols=321  Identities=13%  Similarity=0.066  Sum_probs=211.6

Q ss_pred             CCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh-c
Q 013217           29 ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-L  107 (447)
Q Consensus        29 ~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al-~  107 (447)
                      .+.+++.+++++.+.+...+         |...+...+++    +.+++++|.+.     .+.++||++|+..++.++ +
T Consensus        12 ~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~~l~----~~la~~~~~~~-----~i~~~sgt~al~~~l~~l~~   73 (373)
T 3frk_A           12 HDEIEYEIKFKFEEIYKRNW---------FILGDEDKKFE----QEFADYCNVNY-----CIGCGNGLDALHLILKGYDI   73 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHTC---------CSSSHHHHHHH----HHHHHHHTSSE-----EEEESCHHHHHHHHHHHTTC
T ss_pred             cCCCCHHHHHHHHHHHHCCC---------ccCCchHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHcCC
Confidence            33457888888888776532         12223344554    67888999863     345688999999999999 9


Q ss_pred             CCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCCCCChH
Q 013217          108 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYP  187 (447)
Q Consensus       108 ~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~~~~~~  187 (447)
                      +|||+|+++.+.|.+...        .+...|.  +++.++++++++.+|++++++++++ ++++|+++. .++...|++
T Consensus        74 ~~gd~Vi~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~n-~~G~~~~l~  141 (373)
T 3frk_A           74 GFGDEVIVPSNTFIATAL--------AVSYTGA--KPIFVEPDIRTYNIDPSLIESAITE-KTKAIIAVH-LYGQPADMD  141 (373)
T ss_dssp             CTTCEEEEETTSCTHHHH--------HHHHHSC--EEEEECEETTTTEECGGGTGGGCCT-TEEEEEEEC-CTTCCCCHH
T ss_pred             CCcCEEEECCCCcHHHHH--------HHHHcCC--EEEEEeccccccCcCHHHHHHhcCC-CCeEEEEEC-CCcCcccHH
Confidence            999999999998877542        2334454  5666667766789999999999987 889888543 233378999


Q ss_pred             HHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeC--CCcccCC-CCCceEEeecCCcchhhHHHHhhhccCC
Q 013217          188 RMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTT--THKSLRG-PRGGMIFFKKDPVLGVELESAINNAVFP  264 (447)
Q Consensus       188 ~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s--~~K~l~G-p~gG~i~~~~~~~~~~~~~~~i~~~~~~  264 (447)
                      +|.++|+++|+++++|++|+.|....+....  ...|++++|  .||++++ +.||+++++++     ++.+++......
T Consensus       142 ~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~--~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~-----~~~~~~~~~~~~  214 (373)
T 3frk_A          142 EIKRIAKKYNLKLIEDAAQAHGSLYKGMKVG--SLGDAAGFSFYPAKNLGSLGDGGAVVTNDK-----DLAEKIKALSNY  214 (373)
T ss_dssp             HHHHHHHHHTCEEEEECTTCTTCEETTEETT--SSSSEEEEECCTTSSSCCSSSCEEEEESCH-----HHHHHHHHHHBT
T ss_pred             HHHHHHHHcCCEEEEECCcccCCEECCEecc--ccccEEEEeCcCCCccCccceeEEEEeCCH-----HHHHHHHHHHhc
Confidence            9999999999999999999887663321111  126888888  5599977 67899888763     565555432221


Q ss_pred             CC--------CCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCC----eeEEecCCCC
Q 013217          265 GL--------QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDN----HLVLVDLRPM  332 (447)
Q Consensus       265 ~~--------~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~----~~~~v~~~~~  332 (447)
                      +.        .|.+.  .+.++.+++......++++..++..++++++.+.|.+.++.+.......    +.+.+..   
T Consensus       215 g~~~~~~~~~~g~~~--~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---  289 (373)
T 3frk_A          215 GSEKKYHHIYKGFNS--RLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINNPNVIIPVEADYAKHVWYTFVIRS---  289 (373)
T ss_dssp             TCSBTTBCCSCCCBC--CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTTEECCCCCTTEECCCSSEEEEE---
T ss_pred             CcccCCccccccccC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEeccCCCCCceeeEEEEEEe---
Confidence            11        11100  0111222222222234667778888888888888877665443211111    1122221   


Q ss_pred             CCCHHHHHHHHhhcCeEEccCC-CCCCCCC-----------C------CCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          333 GIDGARVEKILDMASITLNKNS-VPGDKSA-----------L------VPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       333 ~~~~~~~~~~L~~~gI~v~~~~-~p~~~~~-----------~------~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                       .+..++.+.|.++||.++..+ .|.+..+           .      ..+.+|++++..+|    ++|++++++.|++.
T Consensus       290 -~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t----~~di~~~~~~l~~~  364 (373)
T 3frk_A          290 -EKRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMK----NEEIEYVIDKINAW  364 (373)
T ss_dssp             -SSHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCC----HHHHHHHHHHHHTC
T ss_pred             -CCHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCC----HHHHHHHHHHHHHH
Confidence             257889999999999998653 2221100           0      01579999998887    99999999998765


Q ss_pred             HH
Q 013217          395 VE  396 (447)
Q Consensus       395 l~  396 (447)
                      ..
T Consensus       365 ~~  366 (373)
T 3frk_A          365 KL  366 (373)
T ss_dssp             C-
T ss_pred             hh
Confidence            43

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.94  E-value=5.4e-25  Score=217.61  Aligned_cols=322  Identities=18%  Similarity=0.169  Sum_probs=218.4

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCc-ccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc--C
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKR-YYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--K  108 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~-~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~--~  108 (447)
                      .+|.+++++.+.+.+. ..+..+.+ .|+..+...+++    +.+++++|.+ +    .|.+++|++++..++.++.  .
T Consensus        61 ~~p~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~----~~la~~~~~~-~----~i~~~sG~~a~~~~~~~l~~~~  130 (401)
T 2bwn_A           61 QHPVVLAAMHEALEAV-GAGSGGTRNISGTTAYHRRLE----AEIAGLHQKE-A----ALVFSSAYNANDATLSTLRVLF  130 (401)
T ss_dssp             GCHHHHHHHHHHHHHH-CSCCCSBTTTBCCBHHHHHHH----HHHHHHTTCS-E----EEEESCHHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHc-CCCCCCcCcccCChHHHHHHH----HHHHHHhCCC-c----EEEECCcHHHHHHHHHHHhcCC
Confidence            3688999998887652 11111111 123333444444    6788899874 2    4555999988888877653  6


Q ss_pred             CCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhh---hCCcEEEEcCCCCCC--C
Q 013217          109 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---FRPKLIIAGASAYPR--D  183 (447)
Q Consensus       109 pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~---~~~klii~~~~~~~~--~  183 (447)
                      |||+|++..+.|++...        .+...|.  +++.++.+      |+++++++++.   .++++|++++++||+  .
T Consensus       131 ~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~------d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~  194 (401)
T 2bwn_A          131 PGLIIYSDSLNHASMIE--------GIKRNAG--PKRIFRHN------DVAHLRELIAADDPAAPKLIAFESVYSMDGDF  194 (401)
T ss_dssp             TTCEEEEETTCCHHHHH--------HHHHSCC--CEEEECTT------CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCB
T ss_pred             CCCEEEECchhhHHHHH--------HHHHcCC--eEEEEcCC------CHHHHHHHHHhhccCCceEEEEecCcCCCCCc
Confidence            99999999988876542        2233454  44444432      78999988873   378999998777764  7


Q ss_pred             CChHHHHHHHHHhCCEEEEehhhhcccccc-c--cC-CCCC-CcccEEEeCCCcccCCCCCceEEeecCCcchhhHHHHh
Q 013217          184 FDYPRMRQIADAVGALLMMDMAHISGLVAA-S--VV-ADPF-KYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAI  258 (447)
Q Consensus       184 ~~~~~i~~ia~~~g~~livD~a~~~g~~~~-~--~~-~~~~-~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i  258 (447)
                      .|+++|.++|+++|+++++|++|+.|.... +  .. ...+ +..|++++|++|++++ .||+++.++      ++.+.+
T Consensus       195 ~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~-~GG~~~~~~------~~~~~l  267 (401)
T 2bwn_A          195 GPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGV-FGGYIAASA------RMVDAV  267 (401)
T ss_dssp             CCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCS-CCEEEEECH------HHHHHH
T ss_pred             CCHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccC-CCCEEecCH------HHHHHH
Confidence            899999999999999999999998665321 1  10 0011 1358999999999864 468988876      666655


Q ss_pred             hhccC--CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCCCCH
Q 013217          259 NNAVF--PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDG  336 (447)
Q Consensus       259 ~~~~~--~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~  336 (447)
                      .....  ....++++ ..++++..+++.+...++++..+++.++++++.+.|.+.|++++.+  ..+++++.+.. +.+.
T Consensus       268 ~~~~~~~~~~~~~~~-~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~~~~~~~~~~~-~~~~  343 (401)
T 2bwn_A          268 RSYAPGFIFSTSLPP-AIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDH--GSHIVPVVIGD-PVHT  343 (401)
T ss_dssp             HHHCHHHHTSBCCCH-HHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC--SSSCEEEECCC-HHHH
T ss_pred             HHhCcCceecCCCCH-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHCCCcccCC--CCCeEEEEeCC-hHHH
Confidence            43211  11223434 5566667788877665567888999999999999998888877643  23466777642 2345


Q ss_pred             HHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          337 ARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       337 ~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      .++.+.| +++||.+.....|+.  +...+.+|++++..++    ++|++++++.|+++++
T Consensus       344 ~~~~~~L~~~~gi~v~~~~~~~~--~~~~~~iRis~~~~~t----~~~i~~~~~~l~~~~~  398 (401)
T 2bwn_A          344 KAVSDMLLSDYGVYVQPINFPTV--PRGTERLRFTPSPVHD----LKQIDGLVHAMDLLWA  398 (401)
T ss_dssp             HHHHHHHHHHHCEECCEECTTTS--CTTCCEEEECCCTTSC----HHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHhcCCEEEeecCCCCC--CCCCceEEEEeeCCCC----HHHHHHHHHHHHHHHH
Confidence            6788777 588999965432221  1123589999987777    9999999999988764

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.94  E-value=3.5e-25  Score=218.61  Aligned_cols=324  Identities=13%  Similarity=0.091  Sum_probs=213.3

Q ss_pred             CCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh-c
Q 013217           29 ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-L  107 (447)
Q Consensus        29 ~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al-~  107 (447)
                      ...+++++++++...+.+.|.   +.    .| +...+++    +.+++++|.+.     .+.+++|++|+..++.++ +
T Consensus         7 ~p~~~~~v~~a~~~~~~~~~~---~~----~g-~~~~~l~----~~la~~~~~~~-----v~~~~ggt~al~~~~~~l~~   69 (394)
T 1o69_A            7 PPHMGGNELKYIEEVFKSNYI---AP----LG-EFVNRFE----QSVKDYSKSEN-----ALALNSATAALHLALRVAGV   69 (394)
T ss_dssp             -----CCHHHHHHHHHHHTTT---SC----TT-HHHHHHH----HHHHHHHCCSE-----EEEESCHHHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHHHHHHcCCc---cC----CC-hHHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHcCC
Confidence            345678888998887765431   10    11 2234444    67888888742     244567779999999999 9


Q ss_pred             CCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh--CCcEEEEcCCCCCCCCC
Q 013217          108 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASAYPRDFD  185 (447)
Q Consensus       108 ~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~--~~klii~~~~~~~~~~~  185 (447)
                      +|||+|+++++.|.++..        .+...|.  +++.++++ +++.+|++++++++++.  +|++|++++ .++...+
T Consensus        70 ~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~~~v~~~~-~~G~~~~  137 (394)
T 1o69_A           70 KQDDIVLASSFTFIASVA--------PICYLKA--KPVFIDCD-ETYNIDVDLLKLAIKECEKKPKALILTH-LYGNAAK  137 (394)
T ss_dssp             CTTCEEEEESSSCGGGTH--------HHHHTTC--EEEEECBC-TTSSBCHHHHHHHHHHCSSCCCEEEEEC-GGGCCCC
T ss_pred             CCCCEEEECCCccHHHHH--------HHHHcCC--EEEEEEeC-CCCCcCHHHHHHHHhcccCCceEEEEEC-CCCChhh
Confidence            999999999998877642        2334454  55566666 56889999999998764  689988875 2334789


Q ss_pred             hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCceEEeecCCcchhhHHHHhhhccCCC
Q 013217          186 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPG  265 (447)
Q Consensus       186 ~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~  265 (447)
                      +++|.++|+++|+++++|++|+.|..+.+.....+..+|+.++|.||.++|+++|+++++++     ++.+.+......+
T Consensus       138 l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~~~~~G~~~~~~~-----~l~~~l~~~~~~~  212 (394)
T 1o69_A          138 MDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITTSGGGMLIGKNK-----EKIEKARFYSTQA  212 (394)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCH-----HHHHHHHHHTBTC
T ss_pred             HHHHHHHHHHcCCEEEEECcCcccceeCCcccccccCcEEEEEeCCccCCCCCceEEEECCH-----HHHHHHHHHHHhc
Confidence            99999999999999999999987876554322122357889999999998888899999642     6666655432211


Q ss_pred             CC--------------CCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCC---CC-eeEEe
Q 013217          266 LQ--------------GGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS---DN-HLVLV  327 (447)
Q Consensus       266 ~~--------------g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~---~~-~~~~v  327 (447)
                      ..              ++++....  +  ++..+  ..+++..+++.++++++.+.|.+. +++.....   .+ +++++
T Consensus       213 ~~~~~~~~~~~~g~~~~~~~~~aa--~--~l~~l--~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~i  285 (394)
T 1o69_A          213 RENCLHYEHLDYGYNYRLSNVLGA--I--GVAQM--EVLEQRVLKKREIYEWYKEFLGEY-FSFLDELENSRSNRWLSTA  285 (394)
T ss_dssp             CCSSSSCCCSSCCCBCBCCHHHHH--H--HHHHH--TTHHHHHHHHHHHHHHHHHHHTTT-EECCCCCTTEECCCSSEEE
T ss_pred             cccCccccccccCcccCcCHHHHH--H--HHHHH--HHHHHHHHHHHHHHHHHHHHhccc-ccccCCCCCCcceeEEEEE
Confidence            10              02222221  1  22222  235667888999999999999887 66544311   12 23455


Q ss_pred             cCCCC--------------------CCCHHHHHHHHhhcCeEEccCCCCCCC-CCCCC--------------CeEEEecC
Q 013217          328 DLRPM--------------------GIDGARVEKILDMASITLNKNSVPGDK-SALVP--------------GGIRIGSP  372 (447)
Q Consensus       328 ~~~~~--------------------~~~~~~~~~~L~~~gI~v~~~~~p~~~-~~~~~--------------~~iRig~~  372 (447)
                      .+...                    +++..++.+.|.++||.++.+..|.+. +.+..              .++|+.++
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (394)
T 1o69_A          286 LINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSG  365 (394)
T ss_dssp             EESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCC
T ss_pred             EecchhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCC
Confidence            55421                    235678899999999999876433111 11111              34666656


Q ss_pred             ccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          373 AMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       373 ~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      ..+|    ++|+++++++|++++..
T Consensus       366 ~~~t----~edi~~~~~~l~~~~~~  386 (394)
T 1o69_A          366 TAMS----KDDVYEISKLILKSIKA  386 (394)
T ss_dssp             TTCC----HHHHHHHHHHHHHHHC-
T ss_pred             CCCC----HHHHHHHHHHHHHHHhc
Confidence            5565    99999999999887653

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.94  E-value=2.3e-24  Score=210.00  Aligned_cols=316  Identities=16%  Similarity=0.135  Sum_probs=218.8

Q ss_pred             cCeeEecCCCC--CCHHHHHHHhhhhhcc--CCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH
Q 013217           21 KSLELIASENF--TSRAVMEAVGSCLTNK--YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS   96 (447)
Q Consensus        21 ~~i~l~~~~n~--~~~~v~~a~~~~~~~~--~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs   96 (447)
                      ..|+|..+++.  .++.|++++...+.+.  ...+|+...       ..+++    +++++++|++++.+   +.+++|+
T Consensus        27 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~-------~~~lr----~~la~~~g~~~~~i---~~t~g~~   92 (360)
T 3hdo_A           27 SWIKLNTNENPYPPSPEVVKAILEELGPDGAALRIYPSAS-------SQKLR----EVAGELYGFDPSWI---IMANGSD   92 (360)
T ss_dssp             TSEECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSCCCSS-------CHHHH----HHHHHHHTCCGGGE---EEESSHH
T ss_pred             ceeeccCCCCCCCCCHHHHHHHHHHHhcccchhhcCCCCc-------hHHHH----HHHHHHhCcCcceE---EEcCCHH
Confidence            46888888885  4799999998877652  012444321       13443    67888889876533   2234455


Q ss_pred             HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 013217           97 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG  176 (447)
Q Consensus        97 ~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~  176 (447)
                      +|+..++.++++|||+|++.++.|.++..        .+...|.  +++.+++++ ++.+  ++++   +..++++|+++
T Consensus        93 ~al~~~~~~l~~~gd~Vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~~-~~~~--~~l~---~~~~~~~v~i~  156 (360)
T 3hdo_A           93 EVLNNLIRAFAAEGEEIGYVHPSYSYYGT--------LAEVQGA--RVRTFGLTG-DFRI--AGFP---ERYEGKVFFLT  156 (360)
T ss_dssp             HHHHHHHHHHCCTTCEEEEESSSCTHHHH--------HHHHHTC--EEEEECBCT-TSSB--TTCC---SSBCSSEEEEE
T ss_pred             HHHHHHHHHHhCCCCEEEEcCCChHHHHH--------HHHHCCC--EEEEeeCCC-CCCH--HHHH---hhcCCCEEEEe
Confidence            99999999999999999999988876531        2334454  555655653 3444  4433   32367898888


Q ss_pred             CCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCC---CcccEEEeCCCccc--CCCCCceEEeecCCc
Q 013217          177 ASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KYCDVVTTTTHKSL--RGPRGGMIFFKKDPV  249 (447)
Q Consensus       177 ~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~---~~~Di~~~s~~K~l--~Gp~gG~i~~~~~~~  249 (447)
                      .++||+  ..|.+++.++|+++|+++++|++|+. +...+  ..++   ...+++++|+||++  +|.|.|++++++   
T Consensus       157 ~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~-~~~~~--~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~---  230 (360)
T 3hdo_A          157 TPNAPLGPSFPLEYIDELARRCAGMLVLDETYAE-FAESN--ALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARP---  230 (360)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGG-GSSCC--CTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECCH---
T ss_pred             CCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHh-hCCcc--hhHHhccCCCEEEEecchHhhcCCccceeeEeeCH---
Confidence            777775  88999999999999999999999853 22111  1111   12458889999996  467779999976   


Q ss_pred             chhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecC
Q 013217          250 LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDL  329 (447)
Q Consensus       250 ~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~  329 (447)
                         ++.+.+.....+   .+++....+++..+++.  ...+++..+++.++++.+.+.|++.|+.+..+  ...++++.+
T Consensus       231 ---~~~~~~~~~~~~---~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~--~~~~~~~~~  300 (360)
T 3hdo_A          231 ---EVIAALDKIRDH---YNLDRLAQAACVAALRD--QAYLSECCRRIRETREWFTTELRSIGYDVIPS--QGNYLFATP  300 (360)
T ss_dssp             ---HHHHHHHHHSCS---CCSCHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHTTCEECCC--SSSEEEEEC
T ss_pred             ---HHHHHHHHhCCC---CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCEEcCC--CccEEEEEC
Confidence               787777665433   24566666666666664  23457788889999999999999888887543  344566665


Q ss_pred             CCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          330 RPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       330 ~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      .  +.+..++.+.|.++||.++.+..     +..++.+|+++.   +    ++|++++.++|+++-+
T Consensus       301 ~--~~~~~~l~~~l~~~gi~v~~~~~-----~~~~~~iRis~~---~----~~e~~~l~~al~~~~~  353 (360)
T 3hdo_A          301 P--DRDGKRVYDGLYARKVLVRHFSD-----PLLAHGMRISIG---T----REEMEQTLAALKEIGE  353 (360)
T ss_dssp             T--TCCHHHHHHHHHHTTEECBCCCS-----TTTTTSEEEECC---C----HHHHHHHHHHHHHHHC
T ss_pred             C--CCCHHHHHHHHHHCCEEEEECCC-----CCCCCEEEEEcC---C----HHHHHHHHHHHHHHhc
Confidence            4  45788899999999999965321     122468999965   4    8999999999887654

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.94  E-value=4.2e-26  Score=223.01  Aligned_cols=320  Identities=18%  Similarity=0.135  Sum_probs=213.9

Q ss_pred             eEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHH
Q 013217           24 ELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY  103 (447)
Q Consensus        24 ~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~  103 (447)
                      ++..+.+.+++++++++.+.+.+.+         |...+...+++    +.+++++|.+.     .+.++||++|+..++
T Consensus         6 ~~~~~~~~~~~~v~~a~~~~~~~~~---------~~~~~~~~~l~----~~la~~~~~~~-----~~~~~sGt~al~~al   67 (367)
T 3nyt_A            6 DLKNQQARIKDKIDAGIQRVLRHGQ---------YILGPEVTELE----DRLADFVGAKY-----CISCANGTDALQIVQ   67 (367)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHCC---------CSSCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHH
T ss_pred             cccccccccCHHHHHHHHHHHhcCC---------ccCChHHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHH
Confidence            3334444567889999888776531         11223344555    67888999873     355688999999999


Q ss_pred             HHh-cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC
Q 013217          104 TAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR  182 (447)
Q Consensus       104 ~al-~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~  182 (447)
                      .++ ++|||+|+++.+.|.+...        .+...|.  +++.++++++++.+|++++++++++ ++++|+.++ .++.
T Consensus        68 ~~~~~~~gd~Vi~~~~~~~~~~~--------~~~~~G~--~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~-~~G~  135 (367)
T 3nyt_A           68 MALGVGPGDEVITPGFTYVATAE--------TVALLGA--KPVYVDIDPRTYNLDPQLLEAAITP-RTKAIIPVS-LYGQ  135 (367)
T ss_dssp             HHTTCCTTCEEEEESSSCTHHHH--------HHHHTTC--EEEEECBCTTTCSBCGGGTGGGCCT-TEEEECCBC-GGGC
T ss_pred             HHhCCCCcCEEEECCCccHHHHH--------HHHHcCC--EEEEEecCCccCCcCHHHHHHhcCc-CCcEEEeeC-CccC
Confidence            999 8999999999998876532        2334454  6667777766789999999999976 888887442 2234


Q ss_pred             CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCC--CcccCC-CCCceEEeecCCcchhhHHHHhh
Q 013217          183 DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTT--HKSLRG-PRGGMIFFKKDPVLGVELESAIN  259 (447)
Q Consensus       183 ~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~--~K~l~G-p~gG~i~~~~~~~~~~~~~~~i~  259 (447)
                      ..|+++|.++|+++|+++|+|++|+.|....+.....  ..|++++|+  ||++++ +.||+++++++     ++.+++.
T Consensus       136 ~~~~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~--~~di~~~Sf~~~K~l~~~g~gg~~~~~~~-----~l~~~~~  208 (367)
T 3nyt_A          136 CADFDAINAIASKYGIPVIEDAAQSFGASYKGKRSCN--LSTVACTSFFPSAPLGCYGDGGAIFTNDD-----ELATAIR  208 (367)
T ss_dssp             CCCHHHHHHHHHHTTCCBEEECTTTTTCEETTEETTS--SSSEEEEECCTTSSSCCSSCCEEEEESCH-----HHHHHHH
T ss_pred             hhhHHHHHHHHHHcCCEEEEECccccCCeECCeeccC--CCCEEEEECCCCCcCCCcCceeEEEeCCH-----HHHHHHH
Confidence            7899999999999999999999998876644322111  138999885  899976 45788888763     6666655


Q ss_pred             hccCC-----------CCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCC----Cee
Q 013217          260 NAVFP-----------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSD----NHL  324 (447)
Q Consensus       260 ~~~~~-----------~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~----~~~  324 (447)
                      .....           +.....+....++   ++..+  ..+++..++..++++++.+.|.+.|+.+......    .+.
T Consensus       209 ~~~~~g~~~~~~~~~~g~~~~~~~~~aa~---~~~~l--~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~  283 (367)
T 3nyt_A          209 QIARHGQDRRYHHIRVGVNSRLDTLQAAI---LLPKL--EIFEEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQ  283 (367)
T ss_dssp             HHTBTTEEETTEECSCCCBCCCCHHHHHH---HHHHH--HTHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSS
T ss_pred             HHHhcCCCcCceeeccCcCCCccHHHHHH---HHHHH--HHHHHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEE
Confidence            43222           1111222222222   22222  2356667888889999999999877655432111    122


Q ss_pred             EEecCCCCCCCHHHHHHHHhhcCeEEccCCC-CCCC-CCC-------------CCCeEEEecCccccCCCCHHHHHHHHH
Q 013217          325 VLVDLRPMGIDGARVEKILDMASITLNKNSV-PGDK-SAL-------------VPGGIRIGSPAMTTRGFSEKEFVAIAD  389 (447)
Q Consensus       325 ~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~-p~~~-~~~-------------~~~~iRig~~~~~~~g~~~~di~~l~~  389 (447)
                      +.+.+.    +.+++.+.|.++||.++..+. |.+. +++             ....||++++..+|    ++|++++++
T Consensus       284 ~~~~~~----~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t----~~~i~~v~~  355 (367)
T 3nyt_A          284 YTVRMD----NRESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLD----TASIKIICA  355 (367)
T ss_dssp             EEEECS----SHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCC----HHHHHHHHH
T ss_pred             EEEEeC----CHHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCC----HHHHHHHHH
Confidence            333332    578899999999999876532 3221 111             12358998876666    999999999


Q ss_pred             HHHH
Q 013217          390 FIHE  393 (447)
Q Consensus       390 ~i~~  393 (447)
                      .|++
T Consensus       356 ~~~~  359 (367)
T 3nyt_A          356 ALTN  359 (367)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            8864

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=3.8e-25  Score=221.99  Aligned_cols=339  Identities=13%  Similarity=0.092  Sum_probs=222.9

Q ss_pred             hhcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCC
Q 013217           19 QFKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLS   94 (447)
Q Consensus        19 ~~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~s   94 (447)
                      .+..|+|..+.+.  .|+.+.+++...+......+|+..      ....++++.+.+++.+.+|.+  ++    +|.+++
T Consensus        56 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~------~g~~~lr~~ia~~l~~~~g~~~~~~----~v~~t~  125 (447)
T 3b46_A           56 GRELINLGQGFFSYSPPQFAIKEAQKALDIPMVNQYSPT------RGRPSLINSLIKLYSPIYNTELKAE----NVTVTT  125 (447)
T ss_dssp             TSCCEECCCCSCSSCCCHHHHHHHHHHTTSGGGGSCCCT------TCCHHHHHHHHHHHTTTTTSCCCGG----GEEEES
T ss_pred             CCCeEEccCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCC------CCCHHHHHHHHHHHHHhcCCCCChh----hEEEeC
Confidence            3467888776653  478999998877653111233221      112355555556777777754  33    233466


Q ss_pred             c-HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-----------CCCCCHHHHH
Q 013217           95 G-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-----------TGLVDYDMLE  162 (447)
Q Consensus        95 G-s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------~~~id~~~l~  162 (447)
                      | ++|+..++.++++|||+|++.+|.|.++..        .+...|.  +++.++++++           ++.+|+++|+
T Consensus       126 G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~  195 (447)
T 3b46_A          126 GANEGILSCLMGLLNAGDEVIVFEPFFDQYIP--------NIELCGG--KVVYVPINPPKELDQRNTRGEEWTIDFEQFE  195 (447)
T ss_dssp             HHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEEEECCGGGGTSCBCSTTSEECHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCEEEEeCCCchhHHH--------HHHHcCC--EEEEEeCCCccccccccccccCcccCHHHHH
Confidence            6 599999999999999999999998876532        2334554  4444445433           4679999999


Q ss_pred             HHhhhhCCcEEEEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCC--CC----CcccEEEeCCC
Q 013217          163 KTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PF----KYCDVVTTTTH  231 (447)
Q Consensus       163 ~~~~~~~~klii~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~--~~----~~~Di~~~s~~  231 (447)
                      +++++ ++++|++++++||+  ..   ++++|.++|++||+++|+|++|. ++...+....  .+    .+.++++.|+|
T Consensus       196 ~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~i~i~S~s  273 (447)
T 3b46_A          196 KAITS-KTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYE-HLYFTDSFTRIATLSPEIGQLTLTVGSAG  273 (447)
T ss_dssp             TTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT-TCBCSSCCCCGGGSCHHHHTTEEEEEEHH
T ss_pred             Hhhcc-CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccch-hcccCCCCcCHHHcCCCCCCcEEEEecCc
Confidence            99875 89999988778775  33   58999999999999999999974 3333321111  11    13689999999


Q ss_pred             ccc--CCCCCceEEe-ecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHH
Q 013217          232 KSL--RGPRGGMIFF-KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-SPEFKVYQNKVVSNCRALASR  307 (447)
Q Consensus       232 K~l--~Gp~gG~i~~-~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~-~~~~~~~~~~~~~~~~~l~~~  307 (447)
                      |++  +|+|.|++++ ++      ++.+.+......... +++....+++..+++... ...+++..+++.++++.+.+.
T Consensus       274 K~~~~~G~riG~~~~~~~------~l~~~l~~~~~~~~~-~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~  346 (447)
T 3b46_A          274 KSFAATGWRIGWVLSLNA------ELLSYAAKAHTRICF-ASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSI  346 (447)
T ss_dssp             HHTTCTTSCCEEEECSCH------HHHHHHHHHHHHHTS-SCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcCCcchhhEEEEeCCH------HHHHHHHHHHhhccC-CCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            997  4777899999 66      676666542111112 234444555556776542 123567788889999999999


Q ss_pred             HHHCCcEeeeCCCCCeeEEecCCCC--------------CCCHHHHHHHH-hhcCeEEccCCCCCCCC--CCCCCeEEEe
Q 013217          308 LVELGYKLVSGGSDNHLVLVDLRPM--------------GIDGARVEKIL-DMASITLNKNSVPGDKS--ALVPGGIRIG  370 (447)
Q Consensus       308 L~~~g~~~~~~~~~~~~~~v~~~~~--------------~~~~~~~~~~L-~~~gI~v~~~~~p~~~~--~~~~~~iRig  370 (447)
                      |.+.|+++..+ ...+++|+++...              +.+..++.+.| +++||.+..+...+...  +...+.+|++
T Consensus       347 L~~~g~~~~~~-~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls  425 (447)
T 3b46_A          347 FDELGLPYTAP-EGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFA  425 (447)
T ss_dssp             HHHHTCCEECC-SBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEE
T ss_pred             HHHCCCeecCC-CeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEE
Confidence            98888887643 3456678887532              13455677666 46899986532111100  1124689999


Q ss_pred             cCccccCCCCHHHHHHHHHHHHH
Q 013217          371 SPAMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       371 ~~~~~~~g~~~~di~~l~~~i~~  393 (447)
                      +..  +    ++++++.++.|.+
T Consensus       426 ~~~--~----~e~l~~~~~~l~~  442 (447)
T 3b46_A          426 VCK--D----DAYLENAVERLKL  442 (447)
T ss_dssp             CCS--C----HHHHHHHHHHGGG
T ss_pred             EeC--C----HHHHHHHHHHHHH
Confidence            752  3    8888888887754

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.93  E-value=1.1e-24  Score=215.98  Aligned_cols=339  Identities=12%  Similarity=0.019  Sum_probs=222.5

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCc
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSG   95 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sG   95 (447)
                      .+.|+|..+++.  .++.|++++...+.+....+|+..      ....++++...+++.+.+|.+  +++   +|.+++|
T Consensus        23 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~------~g~~~l~~~la~~~~~~~~~~~~~~~---~i~~~~g   93 (410)
T 3e2y_A           23 PSVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQYTRG------FGHPALVKALSCLYGKIYQRQIDPNE---EILVAVG   93 (410)
T ss_dssp             TTSEECSSCCCCSCCCHHHHHHHHHHHTCGGGGSCCCT------TCCHHHHHHHHHHHHHHHTSCCCTTT---SEEEESH
T ss_pred             CCeEEecCCCCCCCCCHHHHHHHHHHHhCccccCCCCC------CChHHHHHHHHHHHHHHhCCCCCCCC---CEEEeCC
Confidence            466888777664  589999999887764322244432      112355555556777777754  311   2333565


Q ss_pred             H-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC----------CCCCCCHHHHHHH
Q 013217           96 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE----------STGLVDYDMLEKT  164 (447)
Q Consensus        96 s-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----------~~~~id~~~l~~~  164 (447)
                      + +++..++.++++|||+|++..|.|.++..        .+...|.  +++.+++++          .++.+|+++++++
T Consensus        94 ~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~  163 (410)
T 3e2y_A           94 AYGSLFNSIQGLVDPGDEVIIMVPFYDCYEP--------MVRMAGA--VPVFIPLRSKPTDGMKWTSSDWTFDPRELESK  163 (410)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECEECCCCSSCCBGGGEECCHHHHHTT
T ss_pred             cHHHHHHHHHHhcCCCCEEEEeCCCchhhHH--------HHHHcCC--EEEEEeccccccccccccccCCcCCHHHHHhh
Confidence            5 99999999999999999999988876531        2334454  333433431          2456899999999


Q ss_pred             hhhhCCcEEEEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC------cccEEEeCCCcc
Q 013217          165 AILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK------YCDVVTTTTHKS  233 (447)
Q Consensus       165 ~~~~~~klii~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~------~~Di~~~s~~K~  233 (447)
                      +++ ++++|+++.++||+  ..   ++++|.++|+++|+++|+|++|. ++...+....++.      ..++++.|+||+
T Consensus       164 ~~~-~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~  241 (410)
T 3e2y_A          164 FSS-KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYE-WLVYTGHTHVKIATLPGMWERTITIGSAGKT  241 (410)
T ss_dssp             CCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT-TCBCTTCCCCCGGGSTTCGGGEEEEEEHHHH
T ss_pred             cCC-CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhh-hcccCCCCCCCHHHcCCccCeEEEEecchhh
Confidence            876 89999998788775  32   68999999999999999999974 4333332111111      234888999998


Q ss_pred             c--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHH------hcChhHHHHHHHHHHHHHHHH
Q 013217          234 L--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH------AQSPEFKVYQNKVVSNCRALA  305 (447)
Q Consensus       234 l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~------~~~~~~~~~~~~~~~~~~~l~  305 (447)
                      +  +|.|.|++++++      ++.+.+........ .+++....+++..+++.      .....+++..+++.++++.+.
T Consensus       242 ~g~~G~r~G~~~~~~------~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  314 (410)
T 3e2y_A          242 FSVTGWKLGWSIGPA------HLIKHLQTVQQNSF-YTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMV  314 (410)
T ss_dssp             SSCGGGCCEEEECCH------HHHHHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCceEEEEEECH------HHHHHHHHHHHhhc-cCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHH
Confidence            7  467779999987      67666654332222 23355555555556653      123345778888899999999


Q ss_pred             HHHHHCCcEeeeCCCCCeeEEecCCCC--CCC--------HHHHH-HHHhhcCeEEccCCCCCCCC--CCCCCeEEEecC
Q 013217          306 SRLVELGYKLVSGGSDNHLVLVDLRPM--GID--------GARVE-KILDMASITLNKNSVPGDKS--ALVPGGIRIGSP  372 (447)
Q Consensus       306 ~~L~~~g~~~~~~~~~~~~~~v~~~~~--~~~--------~~~~~-~~L~~~gI~v~~~~~p~~~~--~~~~~~iRig~~  372 (447)
                      +.|.+.|+.+..+ ..++++|+++...  +++        ..++. ..|+++||.+..+...+...  +...+.+|+++.
T Consensus       315 ~~L~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~  393 (410)
T 3e2y_A          315 RLLNSVGLKPIVP-DGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFI  393 (410)
T ss_dssp             HHHHTTTCEEEBC-SBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECC
T ss_pred             HHHHHCCCeecCC-CccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEc
Confidence            9999889887654 3456677776431  222        12444 46678999996543221110  112468999964


Q ss_pred             ccccCCCCHHHHHHHHHHHHH
Q 013217          373 AMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       373 ~~~~~g~~~~di~~l~~~i~~  393 (447)
                      .  +    ++++++.++.|++
T Consensus       394 ~--~----~e~l~~~l~~l~~  408 (410)
T 3e2y_A          394 K--K----DSTLDAAEEIFRA  408 (410)
T ss_dssp             C--C----HHHHHHHHHHHHT
T ss_pred             C--C----HHHHHHHHHHHHh
Confidence            3  4    8999999988764

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=99.93  E-value=2.3e-24  Score=212.60  Aligned_cols=333  Identities=14%  Similarity=0.072  Sum_probs=223.5

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC---CC-ccceeeecC
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD---EN-KWGVNVQPL   93 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~---~~-~~~~~v~~~   93 (447)
                      +..|+|..+++.  .++.+++++...+..  ..+|+..      ....++++...+++.+.+|.+   ++ .+    .++
T Consensus        30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~~------~g~~~lr~~la~~l~~~~g~~~~~~~~~i----~~t   97 (396)
T 3jtx_A           30 MEAVPLHIGEPKHPTPKVITDALTASLHE--LEKYPLT------AGLPELRQACANWLKRRYDGLTVDADNEI----LPV   97 (396)
T ss_dssp             CCCEECSCCSCCSCCCHHHHHHHHHTGGG--GGSCCCT------TCCHHHHHHHHHHHHHHTTTCCCCTTTSE----EEE
T ss_pred             CCeEEeCCcCCCCCCCHHHHHHHHHHhhh--ccCCCCC------CCcHHHHHHHHHHHHHhcCCCCCCCCCeE----EEc
Confidence            356888777774  479999999887753  2244432      112345555667888888854   54 32    235


Q ss_pred             CcH-HHHHHHHHHhcCCC-----CEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhh
Q 013217           94 SGS-PANFEVYTAILKPH-----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL  167 (447)
Q Consensus        94 sGs-~a~~~~~~al~~pg-----d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~  167 (447)
                      +|+ +++..++.++++||     |+|++..|.|.++..        .+...|.  +++.++++.+++.+|++++++++++
T Consensus        98 ~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~~~g~~~d~~~l~~~~~~  167 (396)
T 3jtx_A           98 LGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEG--------ATLLGGG--EIHFANCPAPSFNPDWRSISEEVWK  167 (396)
T ss_dssp             SSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHH--------HHHHTTC--EEEEEECCTTTCCCCGGGSCHHHHH
T ss_pred             CCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHH--------HHHHcCC--EEEEeecCCCCCccCHHHHHHhhcc
Confidence            555 89999999999997     799999988766531        2334454  4555556545667899999999987


Q ss_pred             hCCcEEEEcCCCCCC--CCCh---HHHHHHHHHhCCEEEEehhhhccccccccCCCCC----------CcccEEEeCCCc
Q 013217          168 FRPKLIIAGASAYPR--DFDY---PRMRQIADAVGALLMMDMAHISGLVAASVVADPF----------KYCDVVTTTTHK  232 (447)
Q Consensus       168 ~~~klii~~~~~~~~--~~~~---~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~----------~~~Di~~~s~~K  232 (447)
                       ++++|+++.++||+  ..+.   ++|.++|+++|+++|+|++|. ++...+..+.+.          ...++++.|+||
T Consensus       168 -~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK  245 (396)
T 3jtx_A          168 -RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYS-EIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSK  245 (396)
T ss_dssp             -TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTT-TCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTT
T ss_pred             -CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcccc-ccccCCCCCchHHhhhhhcccccCcEEEEecccc
Confidence             89999988778875  5554   559999999999999999975 333332111110          235689999999


Q ss_pred             cc--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH
Q 013217          233 SL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE  310 (447)
Q Consensus       233 ~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~  310 (447)
                      ++  +|.|.|+++.++      ++.+.+....... .++++....+++..+++.  ....++..+++.++++.+.+.|.+
T Consensus       246 ~~~~~G~r~G~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~  316 (396)
T 3jtx_A          246 RSNVPGLRSGFVAGDA------ELLKNFLLYRTYH-GSAMSIPVQRASIAAWDD--EQHVIDNRRLYQEKFERVIPILQQ  316 (396)
T ss_dssp             TSSCGGGCCEEEEECH------HHHHHHHHHHHHH-TCCCCHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccCCcccceEEEEeCH------HHHHHHHHHHhhc-ccCCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            64  577789998877      6776665432211 234455555555556653  344577788888889999999876


Q ss_pred             CCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHH-hhcCeEEccCCCCCCC---CCCCCCeEEEecCccccCCCCHHHHHH
Q 013217          311 LGYKLVSGGSDNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDK---SALVPGGIRIGSPAMTTRGFSEKEFVA  386 (447)
Q Consensus       311 ~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~---~~~~~~~iRig~~~~~~~g~~~~di~~  386 (447)
                      . +.+..+ ..++++|+++..  .+..++.+.| +++||.+..+..++..   .+...+.+|+++..  +    ++++++
T Consensus       317 ~-~~~~~~-~~~~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~--~----~~~i~~  386 (396)
T 3jtx_A          317 V-FDVKLP-DASFYIWLKVPD--GDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA--D----VATCVK  386 (396)
T ss_dssp             T-SCCCCC-SSSSEEEEECTT--SCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS--C----HHHHHH
T ss_pred             c-CCccCC-CeeEEEEEECCC--CCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC--C----HHHHHH
Confidence            4 333332 345677888754  3566777766 6789999765332211   12235789999754  4    899999


Q ss_pred             HHHHHHHHH
Q 013217          387 IADFIHEGV  395 (447)
Q Consensus       387 l~~~i~~~l  395 (447)
                      .++.|.+++
T Consensus       387 ~l~~l~~~l  395 (396)
T 3jtx_A          387 AAEDIVSLY  395 (396)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHh
Confidence            999887754

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.93  E-value=1.1e-24  Score=217.18  Aligned_cols=333  Identities=17%  Similarity=0.216  Sum_probs=218.9

Q ss_pred             eEecCCCCC--CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHH
Q 013217           24 ELIASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE  101 (447)
Q Consensus        24 ~l~~~~n~~--~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~  101 (447)
                      +|..+++..  |+.+++++...+...   .|+.     ..+...+++    +.+++++|.+.     .+.+++|++|+..
T Consensus        20 ~l~~~~p~~~~p~~~~~a~~~~~~~~---~y~~-----~~~~~~~l~----~~la~~~~~~~-----v~~~~ggt~al~~   82 (424)
T 2po3_A           20 PLLVGRPNRIDRARLYERLDRALDSQ---WLSN-----GGPLVREFE----ERVAGLAGVRH-----AVATCNATAGLQL   82 (424)
T ss_dssp             CEETTCCCCCCHHHHHHHHHHHHHHT---CCSS-----SCHHHHHHH----HHHHHHHTSSE-----EEEESCHHHHHHH
T ss_pred             cccccCCCCCChHHHHHHHHHHHhcC---Cccc-----CCHHHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHH
Confidence            466677754  458999988877542   1221     023344554    67888888752     2444666799999


Q ss_pred             HHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCC
Q 013217          102 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP  181 (447)
Q Consensus       102 ~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~  181 (447)
                      ++.++. +||+|++.++.|.++..        .+...|.  +++.++++++++.+|+++|++++++ ++++|+++. .++
T Consensus        83 ~l~~l~-~gd~Vlv~~~~~~~~~~--------~~~~~G~--~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~-~tG  149 (424)
T 2po3_A           83 LAHAAG-LTGEVIMPSMTFAATPH--------ALRWIGL--TPVFADIDPDTGNLDPDQVAAAVTP-RTSAVVGVH-LWG  149 (424)
T ss_dssp             HHHHHT-CCSEEEEESSSCTHHHH--------HHHHTTC--EEEEECBCTTTSSBCHHHHGGGCCT-TEEEEEEEC-GGG
T ss_pred             HHHHcC-CCCEEEECCCccHHHHH--------HHHHcCC--EEEEEecCCCcCCcCHHHHHHhhCc-CCcEEEEEC-CCC
Confidence            998885 79999999998877632        2334454  5666667655778999999998876 889988864 233


Q ss_pred             CCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-cccEEEeCCC--cccCCCCCceEEeecCCcchhhHHHHh
Q 013217          182 RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESAI  258 (447)
Q Consensus       182 ~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-~~Di~~~s~~--K~l~Gp~gG~i~~~~~~~~~~~~~~~i  258 (447)
                      ...++++|.++|+++|+++|+|++|+.|+...+.   ++. ..|++++|+|  |+++|+++|+++++++     ++.+++
T Consensus       150 ~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~---~~~~~~di~~~S~sk~K~l~~~~~G~~v~~~~-----~l~~~l  221 (424)
T 2po3_A          150 RPCAADQLRKVADEHGLRLYFDAAHALGCAVDGR---PAGSLGDAEVFSFHATKAVNAFEGGAVVTDDA-----DLAARI  221 (424)
T ss_dssp             CCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTE---ETTSSSSEEEEECCTTSSSCCSSCEEEEESCH-----HHHHHH
T ss_pred             CcCCHHHHHHHHHHcCCEEEEECccccCCeECCe---ecccccCEEEEeCCCCCCccCCCCeEEEeCCH-----HHHHHH
Confidence            3779999999999999999999999777664332   121 3588888887  8898888999999842     666665


Q ss_pred             hhccCCCC--------CCCC-cHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeC--CC-CC-ee
Q 013217          259 NNAVFPGL--------QGGP-HNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSG--GS-DN-HL  324 (447)
Q Consensus       259 ~~~~~~~~--------~g~p-~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~--~~-~~-~~  324 (447)
                      ......+.        .|.+ ....+++ +.++...  .+++++.++..++++++.+.|.+. |+++...  +. .+ ++
T Consensus       222 ~~~~~~~~~~~~~~~~~g~~~~~~~~~a-a~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~  298 (424)
T 2po3_A          222 RALHNFGFDLPGGSPAGGTNAKMSEAAA-AMGLTSL--DAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQY  298 (424)
T ss_dssp             HHHHBTTTTCTTCCTTCCCBCCCCHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCC
T ss_pred             HHHHhcCccccccccccCcCCCcCHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEE
Confidence            54322211        1111 1111211 1223222  345667788888888899988874 7877652  11 11 33


Q ss_pred             EEecCCC--CCCCHHHHHHHHhhcCeEEccCCCCC-CC-CCCC--------------CCeEEEecCccccCCCCHHHHHH
Q 013217          325 VLVDLRP--MGIDGARVEKILDMASITLNKNSVPG-DK-SALV--------------PGGIRIGSPAMTTRGFSEKEFVA  386 (447)
Q Consensus       325 ~~v~~~~--~~~~~~~~~~~L~~~gI~v~~~~~p~-~~-~~~~--------------~~~iRig~~~~~~~g~~~~di~~  386 (447)
                      +.+.+..  .+.+..++.+.|.++||.++..+.|. +. ..+.              ...||++++..++    ++|+++
T Consensus       299 ~~i~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t----~e~i~~  374 (424)
T 2po3_A          299 VIVEIDEATTGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIG----DDDIRR  374 (424)
T ss_dssp             EEEEECHHHHSSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCC----HHHHHH
T ss_pred             EEEEECCccchhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCC----HHHHHH
Confidence            3355432  14567889999999999997632211 10 0010              1128888777666    999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 013217          387 IADFIHEGVEITLEA  401 (447)
Q Consensus       387 l~~~i~~~l~~~~~~  401 (447)
                      +++.|+++++.....
T Consensus       375 ~~~~L~~~~~~~~~~  389 (424)
T 2po3_A          375 VADLLRLCATRGREL  389 (424)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHH
Confidence            999999998766544

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=99.93  E-value=3.7e-24  Score=211.96  Aligned_cols=340  Identities=16%  Similarity=0.045  Sum_probs=219.5

Q ss_pred             cCeeEecCCC----CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CCCccceeeecCC
Q 013217           21 KSLELIASEN----FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLS   94 (447)
Q Consensus        21 ~~i~l~~~~n----~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~~~~~v~~~s   94 (447)
                      ..|+|..+..    +.++.+.+++...+.+...    ... |+......++++...+++.+.+|.  +++    .|.+++
T Consensus        35 ~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~----~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~----~v~~t~  105 (407)
T 2zc0_A           35 KLISLAAGDPDPELIPRAVLGEIAKEVLEKEPK----SVM-YTPANGIPELREELAAFLKKYDHLEVSPE----NIVITI  105 (407)
T ss_dssp             CCEECCSCCCCTTTSCHHHHHHHHHHHHHHCGG----GGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGG----GEEEES
T ss_pred             ceEeCCCCCCCchhCCHHHHHHHHHHHHhhccc----ccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcc----eEEEec
Confidence            5678754432    2457888888877754210    000 121122346665555666666684  343    233466


Q ss_pred             c-HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhh----h-h
Q 013217           95 G-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAI----L-F  168 (447)
Q Consensus        95 G-s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~----~-~  168 (447)
                      | ++|+..++.++++|||+|++..|.|.++..        .+...|.  +++.+++++ ++ +|+++|+++++    + .
T Consensus       106 g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~~-~~-~d~~~l~~~l~~~~~~~~  173 (407)
T 2zc0_A          106 GGTGALDLLGRVLIDPGDVVITENPSYINTLL--------AFEQLGA--KIEGVPVDN-DG-MRVDLLEEKIKELKAKGQ  173 (407)
T ss_dssp             HHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHTTTC--EEEEEEEET-TE-ECHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHhcCCCCEEEEeCCChHHHHH--------HHHHcCC--EEEEcccCC-CC-CCHHHHHHHHHhhhcccC
Confidence            6 599999999999999999999988766431        2334454  455555653 33 99999999987    4 2


Q ss_pred             CCcEEE-EcCCCCCC--CCChH---HHHHHHHHhCCEEEEehhhhccccccccCCCCC---C--cccEEEeCCCcccC-C
Q 013217          169 RPKLII-AGASAYPR--DFDYP---RMRQIADAVGALLMMDMAHISGLVAASVVADPF---K--YCDVVTTTTHKSLR-G  236 (447)
Q Consensus       169 ~~klii-~~~~~~~~--~~~~~---~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~---~--~~Di~~~s~~K~l~-G  236 (447)
                      ++++|+ +..++||+  ..+.+   +|.++|+++|+++++|++|..+ ...+....++   +  ..++++.|+||+++ |
T Consensus       174 ~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G  252 (407)
T 2zc0_A          174 KVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFM-RYEGGDIVPLKALDNEGRVIVAGTLSKVLGTG  252 (407)
T ss_dssp             CEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTS-BSSCSSCCCGGGGCSSCCEEEEEESTTTTCTT
T ss_pred             CceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCccc-ccCCCCCCChhhcCCCCCEEEEcccccccCCC
Confidence            678875 45666664  66765   9999999999999999998544 3222111111   1  24578899999986 4


Q ss_pred             CCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc-C-hhHHHHHHHHHHHHHHHHHHHHHC--C
Q 013217          237 PRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-S-PEFKVYQNKVVSNCRALASRLVEL--G  312 (447)
Q Consensus       237 p~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~-~-~~~~~~~~~~~~~~~~l~~~L~~~--g  312 (447)
                      .|+|++++++      ++.+.+.....+...++ +....+++..+++... . ..+++..+++.++++.+.+.|.+.  |
T Consensus       253 ~r~G~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  325 (407)
T 2zc0_A          253 FRIGWIIAEG------EILKKVLMQKQPIDFCA-PAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPN  325 (407)
T ss_dssp             SCCEEEECCH------HHHHHHHHHHTTTTSSS-CHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             cceEEEecCH------HHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            4789999986      77777765443333333 3333444444554321 1 223456677788888999999873  6


Q ss_pred             cEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhc-CeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217          313 YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMA-SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  391 (447)
Q Consensus       313 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~-gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i  391 (447)
                      +++..+ ....++|+++.. +.+..++.+.|.++ ||.+..+..++.. ....+.+|++++.. +    ++|++++++.|
T Consensus       326 ~~~~~~-~~~~~~~~~~~~-~~~~~~l~~~l~~~~gi~v~~g~~~~~~-~~~~~~iRis~~~~-~----~~~i~~~~~~l  397 (407)
T 2zc0_A          326 AEFTKP-IAGMFVMFFLPE-GADGISFANELMEREGVVVVPGKPFYTD-ESGKNAIRLNFSRP-S----KEEIPIGIKKL  397 (407)
T ss_dssp             SCBCCC-SBSSEEEEECST-TCCHHHHHHHHHHHTCEECBCSGGGCSS-SCCTTEEEEECSSS-C----TTHHHHHHHHH
T ss_pred             CEEecC-CCcEEEEEEcCC-CCCHHHHHHHHHHhCCeEEECchhccCC-CCCCCeEEEEeCCC-C----HHHHHHHHHHH
Confidence            766543 234567787753 55778888888776 9999754322111 11246899998755 4    79999999999


Q ss_pred             HHHHHH
Q 013217          392 HEGVEI  397 (447)
Q Consensus       392 ~~~l~~  397 (447)
                      .++++.
T Consensus       398 ~~~l~~  403 (407)
T 2zc0_A          398 AKLYKE  403 (407)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988764

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.93  E-value=1.9e-24  Score=213.49  Aligned_cols=338  Identities=13%  Similarity=0.022  Sum_probs=218.9

Q ss_pred             hhcCeeEecCCC----CCCHHHHHHHhhhhhccC--CCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeec
Q 013217           19 QFKSLELIASEN----FTSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQP   92 (447)
Q Consensus        19 ~~~~i~l~~~~n----~~~~~v~~a~~~~~~~~~--~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~   92 (447)
                      .+..|+|..+..    +.++.+.+++.+.+....  ..+|+..      ....+++    +.+++++|++++.    |.+
T Consensus        31 ~~~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~------~~~~~l~----~~la~~~g~~~~~----v~~   96 (397)
T 2zyj_A           31 RPGILSFAGGLPAPELFPKEEAAEAAARILREKGEVALQYSPT------EGYAPLR----AFVAEWIGVRPEE----VLI   96 (397)
T ss_dssp             STTCEEESSCCCCGGGCCHHHHHHHHHHHHHHHHHHHTSCCCT------TCCHHHH----HHHHHHHTSCGGG----EEE
T ss_pred             CCCceecCCCCCCchhCCHHHHHHHHHHHHHhcchhhhCCCCC------CCCHHHH----HHHHHHhCCChhh----EEE
Confidence            345678754432    146788888877765310  1133221      1123444    5677777876653    334


Q ss_pred             CCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCc
Q 013217           93 LSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPK  171 (447)
Q Consensus        93 ~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~k  171 (447)
                      ++|+ +++..++.++++|||+|++..|.|.++..        .+...|.  +++.++.++ ++ +|+++|++++++.+++
T Consensus        97 ~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~~~~~~~~-~~-~d~~~l~~~l~~~~~~  164 (397)
T 2zyj_A           97 TTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQ--------AFRLQGP--RFLTVPAGE-EG-PDLDALEEVLKRERPR  164 (397)
T ss_dssp             ESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHTTCC--EEEEEEEET-TE-ECHHHHHHHHHHCCCS
T ss_pred             eccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHH--------HHHHcCC--EEEecCcCC-CC-CCHHHHHHHHhhcCCe
Confidence            6665 89999999999999999999988876531        2233454  455555553 33 9999999999765789


Q ss_pred             EEE-EcCCCCCC--CCCh---HHHHHHHHHhCCEEEEehhhhccccccccCCCCCC--cc------cEEEeCCCcccC-C
Q 013217          172 LII-AGASAYPR--DFDY---PRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YC------DVVTTTTHKSLR-G  236 (447)
Q Consensus       172 lii-~~~~~~~~--~~~~---~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~--~~------Di~~~s~~K~l~-G  236 (447)
                      +|+ ++.++||+  ..+.   ++|.++|+++|+++|+|++|+.+ ...+..+.++.  ..      .++++|+||+++ |
T Consensus       165 ~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G  243 (397)
T 2zyj_A          165 FLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYREL-YFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPG  243 (397)
T ss_dssp             CEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTC-BCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGG
T ss_pred             EEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccc-cCCCCCCCchhhhCcccCCCeEEEEeccccccccc
Confidence            875 55666664  5554   58999999999999999998543 32221111111  12      288999999986 4


Q ss_pred             CCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC---Cc
Q 013217          237 PRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL---GY  313 (447)
Q Consensus       237 p~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---g~  313 (447)
                      .|.|++++++      ++.+.+.........++ +....+++..+++.......++..+++.++++.+.+.|++.   |+
T Consensus       244 ~r~G~~~~~~------~~~~~l~~~~~~~~~~~-~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~  316 (397)
T 2zyj_A          244 LRVAFAVAHP------EALQKLVQAKQGADLHT-PMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEV  316 (397)
T ss_dssp             GCCEEEECCH------HHHHHHHHHHHHHHSSC-CHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred             ceeEEEecCH------HHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCe
Confidence            5669999987      67776654322222233 33334444444543110234666777888889999999874   78


Q ss_pred             EeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217          314 KLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       314 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~  393 (447)
                      ++..+ ...+++|+++.. +.+..++.+.|.++||.+..+...+.. +..++.+|++++.. +    ++|++++++.|.+
T Consensus       317 ~~~~~-~~g~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~g~~f~~~-~~~~~~iRis~~~~-~----~~~i~~~~~~l~~  388 (397)
T 2zyj_A          317 RYTRP-KGGMFVWMELPK-GLSAEGLFRRALEENVAFVPGGPFFAN-GGGENTLRLSYATL-D----REGIAEGVRRLGR  388 (397)
T ss_dssp             EECCC-SBSSEEEEECST-TCCHHHHHHHHHHTTEEEEESGGGCTT-SCCTTEEEEECSSS-C----HHHHHHHHHHHHH
T ss_pred             EEccC-CccEEEEEEcCC-CCCHHHHHHHHHHCCCEEechHHhcCC-CCCCCeEEEEcCCC-C----HHHHHHHHHHHHH
Confidence            87543 235567788753 456788888888889999754322111 11346899998764 4    8999999999998


Q ss_pred             HHHHH
Q 013217          394 GVEIT  398 (447)
Q Consensus       394 ~l~~~  398 (447)
                      +++..
T Consensus       389 ~l~~~  393 (397)
T 2zyj_A          389 ALKGL  393 (397)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88643

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.93  E-value=4.5e-25  Score=233.24  Aligned_cols=299  Identities=14%  Similarity=0.066  Sum_probs=209.7

Q ss_pred             HHHHHHHHHcCCCCCccceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecc
Q 013217           70 LCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR  148 (447)
Q Consensus        70 ~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  148 (447)
                      .+++.+++++|.+..     +.+++|+ ++|.+++.++++|||+|++..+.|.+.+.        .+...|.  +++.++
T Consensus       209 ~~ee~la~l~G~d~~-----i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~--------~~~~~G~--~~v~v~  273 (755)
T 2vyc_A          209 ESEKYAARVFGADRS-----WSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQ--------GLMLTGA--KPVYMV  273 (755)
T ss_dssp             HHHHHHHHHHTCSEE-----EEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHH--------HHHHHCC--EEEEEC
T ss_pred             HHHHHHHHHhCCCce-----EEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHH--------HHHHcCC--EEEEEe
Confidence            345788999998742     3347886 89999999999999999999998876542        2334555  444443


Q ss_pred             cCCCC----CCC-----CHHHHHHHhhhh-CC--------cEEEEcCCCCCC-CCChHHHHHHHHHhCCEEEEehhhhcc
Q 013217          149 LDEST----GLV-----DYDMLEKTAILF-RP--------KLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISG  209 (447)
Q Consensus       149 ~~~~~----~~i-----d~~~l~~~~~~~-~~--------klii~~~~~~~~-~~~~~~i~~ia~~~g~~livD~a~~~g  209 (447)
                      .+.++    +.+     |+++|++++++. ++        ++++++++++.+ ..|+++|+++|+++|+++++|+||+.+
T Consensus       274 ~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~pn~~G~v~dl~~I~~ia~~~~~~livDeA~~~~  353 (755)
T 2vyc_A          274 PSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGY  353 (755)
T ss_dssp             CCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESSCTTSEEECHHHHHHHHTTTCSEEEEECTTCTT
T ss_pred             CCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECCCCCceecCHHHHHHHHHHcCCEEEEECcCchh
Confidence            43222    235     999999999752 33        388887776655 789999999999999999999999765


Q ss_pred             ccccccC--CCCCCc--ccE------EEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHH
Q 013217          210 LVAASVV--ADPFKY--CDV------VTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGL  278 (447)
Q Consensus       210 ~~~~~~~--~~~~~~--~Di------~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal  278 (447)
                      +...+..  ..++.+  +|+      +++|+||+|+||++ |+++++++.... + ..++.........++|+...++++
T Consensus       354 ~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i-~-~~~~~~~~~~~~s~sp~~~~iaal  431 (755)
T 2vyc_A          354 ARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAI-N-FSRFNQAYMMHATTSPLYAICASN  431 (755)
T ss_dssp             GGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCC-C-HHHHHHHHHHTSCSSCCHHHHHHH
T ss_pred             cccCcccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCccccc-C-HHHHHHHHHHhCCCCHHHHHHHHH
Confidence            4332211  122223  565      99999999999985 888887631000 0 122222212223578999999999


Q ss_pred             HHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CC---------cEeeeCC-----------------------------
Q 013217          279 AVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LG---------YKLVSGG-----------------------------  319 (447)
Q Consensus       279 ~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g---------~~~~~~~-----------------------------  319 (447)
                      .+|++.+...+.+++.++..++++++++.|++ .|         ++++.+.                             
T Consensus       432 ~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (755)
T 2vyc_A          432 DVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWV  511 (755)
T ss_dssp             HHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHHCGGGTB
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccchhccchhhhhc
Confidence            99999887765678899999999999999987 35         5554321                             


Q ss_pred             --------------C-----CCeeEEecCCCC---------CCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEec
Q 013217          320 --------------S-----DNHLVLVDLRPM---------GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS  371 (447)
Q Consensus       320 --------------~-----~~~~~~v~~~~~---------~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~  371 (447)
                                    .     |...+.++++..         |+++.++.+.|+++||.+...         ....+|+.+
T Consensus       512 ~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e~~---------~~~~v~~~~  582 (755)
T 2vyc_A          512 MHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRT---------TDFQIMFLF  582 (755)
T ss_dssp             CCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCSEE---------CSSEEEEEC
T ss_pred             cCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCCEEeec---------CCCeEEEEE
Confidence                          0     122334455432         355589999999999988642         235799988


Q ss_pred             CccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          372 PAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       372 ~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      +..+|    ++++++++++|.+..+..
T Consensus       583 ~~g~t----~~~~~~l~~al~~~~~~~  605 (755)
T 2vyc_A          583 SMGVT----RGKWGTLVNTLCSFKRHY  605 (755)
T ss_dssp             CTTCC----TTTTHHHHHHHHHHHHHH
T ss_pred             CCCCC----HHHHHHHHHHHHHHHHhh
Confidence            87666    999999999998886654

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.93  E-value=1.3e-24  Score=210.93  Aligned_cols=324  Identities=13%  Similarity=0.117  Sum_probs=210.2

Q ss_pred             cCeeEecCCC-CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHH
Q 013217           21 KSLELIASEN-FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN   99 (447)
Q Consensus        21 ~~i~l~~~~n-~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~   99 (447)
                      ..|.+..+.+ ..+|.+++++.+.+.. |..+      |+..+...    ..++++++++| ...+   .+.+++|++|+
T Consensus         8 ~~id~~~~~~~~~~~~v~~a~~~~~~~-~~~~------~~~~~~~~----~l~~~la~~~g-~~~~---v~~~~~gt~a~   72 (356)
T 1v72_A            8 PALGFSSDNIAGASPEVAQALVKHSSG-QAGP------YGTDELTA----QVKRKFCEIFE-RDVE---VFLVPTGTAAN   72 (356)
T ss_dssp             CCCBCSCGGGCCCCHHHHHHHHHTTSS-CCCS------TTCSHHHH----HHHHHHHHHHT-SCCE---EEEESCHHHHH
T ss_pred             ceEeeccCCccCCCHHHHHHHHhhccC-cccc------cccchHHH----HHHHHHHHHhC-CCCc---EEEeCCccHHH
Confidence            3455544322 3579999999876522 2112      22223233    34578899999 3321   24457778999


Q ss_pred             HHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccc--cceeEEEecccCCCCCCCCHHHHHH-Hhhhh------CC
Q 013217          100 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGT--SIYFESMPYRLDESTGLVDYDMLEK-TAILF------RP  170 (447)
Q Consensus       100 ~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~id~~~l~~-~~~~~------~~  170 (447)
                      ..++.++++|||+|++.++.|++.+..+      .+...  |.  +++.++.+  ++.+|+++|++ ++++.      +|
T Consensus        73 ~~al~~~~~~gd~vi~~~~~~~~~~~~~------~~~~~~~g~--~~~~v~~~--~~~~d~~~l~~~~i~~~~~~~~~~~  142 (356)
T 1v72_A           73 ALCLSAMTPPWGNIYCHPASHINNDECG------APEFFSNGA--KLMTVDGP--AAKLDIVRLRERTREKVGDVHTTQP  142 (356)
T ss_dssp             HHHHHTSCCTTEEEEECTTSHHHHSSTT------HHHHHTTSC--EEEECCCG--GGCCCHHHHHHHTTSSTTCTTSCEE
T ss_pred             HHHHHHhcCCCCEEEEcCccchhhhhch------HHHHHhCCc--EEEEecCC--CCeEcHHHHHHHhhhcchhhccCCc
Confidence            9999999999999999988776543210      02233  54  55555554  46899999999 88652      57


Q ss_pred             cEEEEcCCCCCC-CC---ChHHHHHHHHHhCCEEEEehhhhcccc-ccccCCCCC---CcccEEEeCCCcccCCCCC-ce
Q 013217          171 KLIIAGASAYPR-DF---DYPRMRQIADAVGALLMMDMAHISGLV-AASVVADPF---KYCDVVTTTTHKSLRGPRG-GM  241 (447)
Q Consensus       171 klii~~~~~~~~-~~---~~~~i~~ia~~~g~~livD~a~~~g~~-~~~~~~~~~---~~~Di~~~s~~K~l~Gp~g-G~  241 (447)
                      ++|+++++++++ ..   ++++|.++|++||+++++|++|..+.. ..+..+..+   .++|++++|+||+ .+|.| |+
T Consensus       143 ~~v~~~~~~~tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~~~G~g~  221 (356)
T 1v72_A          143 ACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-GVLAAEAI  221 (356)
T ss_dssp             EEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TCSSCEEE
T ss_pred             eEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-CCcCccEE
Confidence            899888665554 33   478999999999999999999864321 122222222   1578999999999 56767 68


Q ss_pred             EEeecCCcchhhHHHHhhhcc-CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEeeeCC
Q 013217          242 IFFKKDPVLGVELESAINNAV-FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGG  319 (447)
Q Consensus       242 i~~~~~~~~~~~~~~~i~~~~-~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~  319 (447)
                      +++++      ++.+++.... ..+....+.  .. +...+++.+....+.+..+++.++++++.+.|.+ .|+++..+ 
T Consensus       222 ~~~~~------~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-  291 (356)
T 1v72_A          222 VLFNT------SLATEMSYRRKRAGHLSSKM--RF-LSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGG-  291 (356)
T ss_dssp             EESSG------GGHHHHHHHHHHTTCCCSST--HH-HHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESC-
T ss_pred             EEECH------HHHhhHHHHhhccCchhhhH--HH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEEccC-
Confidence            88876      5655544321 111111111  12 2222344444444566778888999999999988 58887654 


Q ss_pred             CCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          320 SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       320 ~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      ...+++|+++.      .++.+.|.++||.+..+.       +..+.+|++++..++    ++|++++++.|+++++.
T Consensus       292 ~~~~~~~~~~~------~~~~~~l~~~gi~v~~g~-------~~~~~iRi~~~~~~~----~~~i~~~~~~l~~~l~~  352 (356)
T 1v72_A          292 TEANILFCRLD------SAMIDALLKAGFGFYHDR-------WGPNVVRFVTSFATT----AEDVDHLLNQVRLAADR  352 (356)
T ss_dssp             CCSSEEEEEEC------HHHHHHHHHTTCBCBCSS-------SSTTEEEEECCTTCC----HHHHHHHHHHHHHTC--
T ss_pred             CCccEEEEEcC------HHHHHHHHhcCeEEeccc-------cCCCeEEEEecCCCC----HHHHHHHHHHHHHHHHh
Confidence            34556677653      367788888999986432       114689999876666    99999999999887653

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.93  E-value=1.7e-25  Score=217.83  Aligned_cols=328  Identities=12%  Similarity=0.079  Sum_probs=215.7

Q ss_pred             cCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccC----chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCc-
Q 013217           21 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG----GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-   95 (447)
Q Consensus        21 ~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~----g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sG-   95 (447)
                      +.+.+.+++..+|+.|++++.+.+.+ +  ..++...|+    ... ...+.+.+++++++++|++..+   .|.+++| 
T Consensus         3 ~~~~~~~g~~~~p~~v~~a~~~~~~~-~--~~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~g~~~~~---~v~~~~g~   75 (360)
T 1w23_A            3 QVFNFNAGPSALPKPALERAQKELLN-F--NDTQMSVMELSHRSQS-YEEVHEQAQNLLRELLQIPNDY---QILFLQGG   75 (360)
T ss_dssp             CCEECCSSSCCCCHHHHHHHHHTSSS-S--TTSSSCGGGSCTTSHH-HHHHHHHHHHHHHHHHTCCTTE---EEEEESSH
T ss_pred             ceEeecCCCcCCCHHHHHHHHHHhhh-h--ccccccccccCCCCHH-HHHHHHHHHHHHHHHhCCCCCc---eEEEECCc
Confidence            45788889889999999999887754 2  122211111    112 2223335668999999997321   2223433 


Q ss_pred             -HHHHHHHHHHhcCC---CCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHH-HhhhhCC
Q 013217           96 -SPANFEVYTAILKP---HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEK-TAILFRP  170 (447)
Q Consensus        96 -s~a~~~~~~al~~p---gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~-~~~~~~~  170 (447)
                       ++|+.+++.+++.+   ||.|++..+.|.+.         ..+...|   +++.++++++++.+|++++++ ++++ +|
T Consensus        76 gt~al~~~~~~l~~~~~~g~~vi~~~~~~~~~---------~~~~~~g---~~~~v~~~~~~~~~d~~~l~~~~i~~-~~  142 (360)
T 1w23_A           76 ASLQFTMLPMNLLTKGTIGNYVLTGSWSEKAL---------KEAKLLG---ETHIAASTKANSYQSIPDFSEFQLNE-ND  142 (360)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEEECSHHHHHHH---------HHHHTTS---EEEEEEECGGGTSCSCCCGGGCCCCT-TE
T ss_pred             chHHHHHHHHHhcCCCCcccEEEecchhHHHH---------HHHHHhC---CeEEeecccccCcCCccchHhhccCC-CC
Confidence             68999999999866   55566554433211         0122344   344445554345689999988 7765 89


Q ss_pred             cEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecC
Q 013217          171 KLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKD  247 (447)
Q Consensus       171 klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~  247 (447)
                      |+|++++++||+  ..+     +|++++|+++++|++|+.|....     ++...|++++|+||+++ |.| |++++++ 
T Consensus       143 k~v~~~~~~nptG~~~~-----~i~~~~~~~li~D~a~~~~~~~~-----~~~~~di~~~s~sK~~~-~~G~G~~~~~~-  210 (360)
T 1w23_A          143 AYLHITSNNTIYGTQYQ-----NFPEINHAPLIADMSSDILSRPL-----KVNQFGMIYAGAQKNLG-PSGVTVVIVKK-  210 (360)
T ss_dssp             EEEEEESEETTTTEECS-----SCCCCCSSCEEEECTTTTTSSCC-----CGGGCSEEEEETTTTTS-CTTCEEEEEEH-
T ss_pred             CEEEEeCCCCCcceecc-----cccccCCceEEEechhhcCCCCc-----CcccCCEEEEEcccccC-CCCcEEEEEcH-
Confidence            999998766665  445     33347999999999997764322     22224899999999885 667 9999987 


Q ss_pred             CcchhhHHHHhhhcc-----------CCCCCCCCcHHHHHHHHHHHHHhcCh-hHHHHHHHHHHHHHHHHHHHHHCC-c-
Q 013217          248 PVLGVELESAINNAV-----------FPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVELG-Y-  313 (447)
Q Consensus       248 ~~~~~~~~~~i~~~~-----------~~~~~g~p~~~~~aal~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g-~-  313 (447)
                           ++.+++....           .....++++...++++..+++.+... ++++..+++.++++++.+.|++.+ + 
T Consensus       211 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  285 (360)
T 1w23_A          211 -----DLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFY  285 (360)
T ss_dssp             -----HHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSS
T ss_pred             -----HHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence                 5555444321           11224677777777777788776544 567888999999999999998865 5 


Q ss_pred             Eeee-CC-CCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217          314 KLVS-GG-SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  391 (447)
Q Consensus       314 ~~~~-~~-~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i  391 (447)
                      .... +. ..++++++.+.. ..+..++.+.|.++||.+..    +..   .++.+|++++..++    ++|+++++++|
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~~~~----~~~---~~~~iRis~~~~~~----~~~i~~~~~~l  353 (360)
T 1w23_A          286 VGHAEKGSRSLMNVTFNLRN-EELNQQFLAKAKEQGFVGLN----GHR---SVGGCRASIYNAVP----IDACIALRELM  353 (360)
T ss_dssp             EESSCGGGBCSSEEEEECSS-HHHHHHHHHHHHHTTEESCB----CCT---TTCSEEEECCTTSC----HHHHHHHHHHH
T ss_pred             cccCCchhccCcEEEEEcCC-CccHHHHHHHHHHCCeeeec----CCC---CCCeEEEEecCCCC----HHHHHHHHHHH
Confidence            5431 21 123466777642 12345677778889999843    321   14579999987777    99999999999


Q ss_pred             HHHHHH
Q 013217          392 HEGVEI  397 (447)
Q Consensus       392 ~~~l~~  397 (447)
                      +++++.
T Consensus       354 ~~~~~~  359 (360)
T 1w23_A          354 IQFKEN  359 (360)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            887653

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.93  E-value=1.2e-23  Score=209.72  Aligned_cols=305  Identities=12%  Similarity=0.075  Sum_probs=200.7

Q ss_pred             HHHHHHHHHHHHHcCCCCCcc-----ceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217           66 ELETLCQKRALAAFNLDENKW-----GVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  139 (447)
Q Consensus        66 ~le~~~~~~~~~~~g~~~~~~-----~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g  139 (447)
                      .+.+...+++++.+|.+....     .-+|.+++|+ +|+..++.++++|||+|++.+|.|.++..        .+...|
T Consensus        82 ~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~g  153 (425)
T 2r2n_A           82 ELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQ--------SLHPLG  153 (425)
T ss_dssp             HHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHH--------HHGGGT
T ss_pred             HHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHH--------HHHHcC
Confidence            344455567888888764100     0134457775 89999999999999999999998876532        233455


Q ss_pred             ceeEEEecccCCCCCCCCHHHHHHHhhh-----------hCCcEEEEc-CCCCCC--CCCh---HHHHHHHHHhCCEEEE
Q 013217          140 IYFESMPYRLDESTGLVDYDMLEKTAIL-----------FRPKLIIAG-ASAYPR--DFDY---PRMRQIADAVGALLMM  202 (447)
Q Consensus       140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~-----------~~~klii~~-~~~~~~--~~~~---~~i~~ia~~~g~~liv  202 (447)
                      .  +++.+++++ + .+|+++|+++++.           .++++|++. .++||+  ..+.   ++|.++|+++|+++|+
T Consensus       154 ~--~~~~v~~~~-~-~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~  229 (425)
T 2r2n_A          154 C--NIINVASDE-S-GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIE  229 (425)
T ss_dssp             C--EEEEECEET-T-EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             C--EEEEeCcCC-C-CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence            4  555555653 2 4999999999872           268988774 667775  5665   4999999999999999


Q ss_pred             ehhhhccccccccCCCCC---C--cccEEEeCCCcccC-CCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHH
Q 013217          203 DMAHISGLVAASVVADPF---K--YCDVVTTTTHKSLR-GPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIG  276 (447)
Q Consensus       203 D~a~~~g~~~~~~~~~~~---~--~~Di~~~s~~K~l~-Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~a  276 (447)
                      |++|+ ++.+.+....++   +  ..+++++|+||+++ |.|.|++++++      ++.+.+........ .+++....+
T Consensus       230 De~~~-~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~------~l~~~l~~~~~~~~-~~~~~~~q~  301 (425)
T 2r2n_A          230 DDPYY-FLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPK------PLIERVILHIQVST-LHPSTFNQL  301 (425)
T ss_dssp             ECTTG-GGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEH------HHHHHHHHHHHTTT-CSSCHHHHH
T ss_pred             ECCcc-cccCCCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCH------HHHHHHHHHHHHhc-CCCCHHHHH
Confidence            99974 333332211111   1  24588999999984 56679999988      67776655332222 234555555


Q ss_pred             HHHHHHHHhcC----hhHHHHHHHHHHHHHHHHHHHHHC--CcEeeeCCCCCeeEEecCCCCCCCHHH-HHHHHhhcCeE
Q 013217          277 GLAVCLKHAQS----PEFKVYQNKVVSNCRALASRLVEL--GYKLVSGGSDNHLVLVDLRPMGIDGAR-VEKILDMASIT  349 (447)
Q Consensus       277 al~~al~~~~~----~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~L~~~gI~  349 (447)
                      ++..+++.+..    ...++..+++.++++.+.+.|.+.  |+..+..+...+++|+++... .+..+ +.+.|.++||.
T Consensus       302 a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~-~~~~~~~~~~l~~~gv~  380 (425)
T 2r2n_A          302 MISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGI-NDVKELIEEKAVKMGVL  380 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTC-SCCHHHHHTHHHHTTEE
T ss_pred             HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCC-CCHHHHHHHHHHHCCcE
Confidence            55556664321    223555677778888888999873  763222223456778887542 34444 67888899999


Q ss_pred             EccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          350 LNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       350 v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      +..+...+.......+.+|+++.. .+    +++++++++.|.++++
T Consensus       381 v~pg~~f~~~~~~~~~~iRis~~~-~~----~~~i~~~~~~l~~~l~  422 (425)
T 2r2n_A          381 MLPGNAFYVDSSAPSPYLRASFSS-AS----PEQMDVAFQVLAQLIK  422 (425)
T ss_dssp             CEEGGGGSSSTTSCCCEEEEECSS-CC----HHHHHHHHHHHHHHHH
T ss_pred             EechhhhcCCCCCCCCEEEEEeCC-CC----HHHHHHHHHHHHHHHH
Confidence            976432221111124689999763 34    8999999999988875

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=99.93  E-value=8.3e-24  Score=212.18  Aligned_cols=341  Identities=12%  Similarity=0.036  Sum_probs=220.1

Q ss_pred             hhcCeeEecCCC----CCCHHHHHHHhhhhhccC--CCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC-CCCccceeee
Q 013217           19 QFKSLELIASEN----FTSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFNL-DENKWGVNVQ   91 (447)
Q Consensus        19 ~~~~i~l~~~~n----~~~~~v~~a~~~~~~~~~--~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~-~~~~~~~~v~   91 (447)
                      .+..|+|..+..    +.++.+.+++...+.+..  ..+|+..      ....++++...+++.+.+|. +++    +|.
T Consensus        75 ~~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~------~g~~~lr~~ia~~~~~~~g~~~~~----~v~  144 (448)
T 3aow_A           75 TSDIISLAGGLPNPKTFPKEIIRDILVEIMEKYADKALQYGTT------KGFTPLRETLMKWLGKRYGISQDN----DIM  144 (448)
T ss_dssp             TSSSEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCT------TCCHHHHHHHHHHHHHHHCCCTTS----EEE
T ss_pred             CCCcEeCCCCCCCchhCCHHHHHHHHHHHHHhhhHHHhCCCCC------CCcHHHHHHHHHHHHHhcCcCChh----hEE
Confidence            345678754433    245778888877665410  1123221      11245555555566566698 443    344


Q ss_pred             cCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhh----
Q 013217           92 PLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAI----  166 (447)
Q Consensus        92 ~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~----  166 (447)
                      +++|+ +|+..++.++++|||+|++..|.|.++..        .+...|.  +++.++.++ + .+|+++|+++++    
T Consensus       145 ~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~v~~~~-~-g~d~~~L~~~l~~~~~  212 (448)
T 3aow_A          145 ITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQ--------AFNFYEP--QYIQIPLDD-E-GMKVEILEEKLKELKS  212 (448)
T ss_dssp             EESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHTTCC--EEEEEEEET-T-EECHHHHHHHHHHHHH
T ss_pred             EeCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHHH--------HHHHcCC--EEEEeccCC-C-CCCHHHHHHHHhhhhc
Confidence            46665 89999999999999999999998876532        2334454  555555653 3 399999999987    


Q ss_pred             h-hCCcEEE-EcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC---C--cccEEEeCCCccc
Q 013217          167 L-FRPKLII-AGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K--YCDVVTTTTHKSL  234 (447)
Q Consensus       167 ~-~~~klii-~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~---~--~~Di~~~s~~K~l  234 (447)
                      + .+|++|+ +..++||+  ..+   +++|.++|+++|+++|+|++|+.+ ...+....++   +  +.++++.|++|++
T Consensus       213 ~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~-~~~g~~~~~~~~~~~~~~vi~~~S~SK~~  291 (448)
T 3aow_A          213 QGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGEL-RYSGNPEKKIKALDNEGRVIYLGTFSKIL  291 (448)
T ss_dssp             TTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTC-BCSSCCCCCTGGGCTTSCEEEEEESTTTT
T ss_pred             cCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccc-cCCCCCCcCHHhcCCCCCEEEEccchhhc
Confidence            3 2788875 45667765  454   568999999999999999997543 3322211111   1  2468899999998


Q ss_pred             C-CCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHHHHC-
Q 013217          235 R-GPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-SPEFKVYQNKVVSNCRALASRLVEL-  311 (447)
Q Consensus       235 ~-Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-  311 (447)
                      + |.|.|++++++      ++.+.+.........+ ++....+++..+++... ....++..+++.++++.+.+.|++. 
T Consensus       292 ~~GlriG~v~~~~------~l~~~l~~~~~~~~~~-~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  364 (448)
T 3aow_A          292 APGFRIGWMVGDP------GIIRKMEIAKQSTDLC-TNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFM  364 (448)
T ss_dssp             CGGGCCEEEEECH------HHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cccccEEEEEeCH------HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            5 55679999987      6777665432221122 24444444444554320 1223555667778889999999874 


Q ss_pred             --CcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHH
Q 013217          312 --GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIAD  389 (447)
Q Consensus       312 --g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~  389 (447)
                        |+++..+ ....++|+++.. +.+..++.+.|.+.||.+..+...+. .+..++.+|+++... +    ++++++.++
T Consensus       365 ~~g~~~~~p-~~g~~~~v~~~~-~~~~~~l~~~l~~~gV~v~pg~~f~~-~~~~~~~iRls~~~~-~----~e~i~~~~~  436 (448)
T 3aow_A          365 PEGVKWTKP-EGGMFIWVTLPD-GIDSKKMLERAIKKGVAYVPGEAFYA-HRDVKNTMRLNFTYV-D----EDKIMEGIK  436 (448)
T ss_dssp             CTTCEECCC-SBSSEEEEECST-TCCHHHHHHHHHHTTEECEEGGGGST-TCCCCSEEEEECSSS-C----THHHHHHHH
T ss_pred             CCCeEEeCC-CccEEEEEEcCC-CCCHHHHHHHHHHCCcEEEcchhhcC-CCCCCCEEEEEeCCC-C----HHHHHHHHH
Confidence              7876543 335667888753 45777888888788999865422211 111346899997653 4    899999999


Q ss_pred             HHHHHHHH
Q 013217          390 FIHEGVEI  397 (447)
Q Consensus       390 ~i~~~l~~  397 (447)
                      .|.++++.
T Consensus       437 ~L~~~l~~  444 (448)
T 3aow_A          437 RLAETIKE  444 (448)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988864

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.93  E-value=8.3e-25  Score=221.32  Aligned_cols=311  Identities=13%  Similarity=0.020  Sum_probs=208.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHcCCCCCcc-------ceeeecCCcHHHHHHHHHHhcC-------------------CCCE
Q 013217           59 GGNEYIDELETLCQKRALAAFNLDENKW-------GVNVQPLSGSPANFEVYTAILK-------------------PHDR  112 (447)
Q Consensus        59 ~g~~~~~~le~~~~~~~~~~~g~~~~~~-------~~~v~~~sGs~a~~~~~~al~~-------------------pgd~  112 (447)
                      ...+...++|+.+.+++++++|.+.+.+       ...+.+++||+||+.++.+...                   |+++
T Consensus       111 ~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~  190 (481)
T 4e1o_A          111 ASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLV  190 (481)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEE
T ss_pred             CCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeE
Confidence            3345678899999999999999985421       0124457788999888776532                   6789


Q ss_pred             EEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhC-----CcEEEEcCCCC-CC-CCC
Q 013217          113 IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR-----PKLIIAGASAY-PR-DFD  185 (447)
Q Consensus       113 Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~-----~klii~~~~~~-~~-~~~  185 (447)
                      |++....|.+..        +.+.+.|.  +++.++++ +++.+|+++|++++++.+     |.+|+++.+++ .+ ..|
T Consensus       191 v~~s~~~H~s~~--------~~~~~~g~--~~~~v~~~-~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~  259 (481)
T 4e1o_A          191 AYASDQAHSSVE--------KAGLISLV--KMKFLPVD-DNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDC  259 (481)
T ss_dssp             EEEETTSCHHHH--------HHHHHHTC--EEEEECCC-TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC
T ss_pred             EEEcCcchHHHH--------HHHHhCCC--ceEEEEcC-CCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCC
Confidence            999988776642        12334454  55555565 578999999999997632     66677664333 33 779


Q ss_pred             hHHHHHHHHHhCCEEEEehhhhccccccccCC---CCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHH-hhh
Q 013217          186 YPRMRQIADAVGALLMMDMAHISGLVAASVVA---DPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA-INN  260 (447)
Q Consensus       186 ~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~---~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~-i~~  260 (447)
                      +++|+++|++||+++++|+||..+....+...   ..+..+|++++++||||.+|.| |+++++++     ..... +..
T Consensus       260 l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~-----~~l~~~~~~  334 (481)
T 4e1o_A          260 LSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDK-----YKLQQTFSV  334 (481)
T ss_dssp             HHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBH-----HHHHTTTCC
T ss_pred             HHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCH-----HHHHHHhcC
Confidence            99999999999999999999877654332211   1223479999999999999988 88888874     33221 110


Q ss_pred             ---ccCC------------CCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEeeeCCCCCee
Q 013217          261 ---AVFP------------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGSDNHL  324 (447)
Q Consensus       261 ---~~~~------------~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~  324 (447)
                         ....            ...++.. ....+++.+++.+...+++++.++..++++++++.|++ .|++++.+ ....+
T Consensus       335 ~~~yl~~~~~~~~~~~~~~~~~~~r~-~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~-~~~~~  412 (481)
T 4e1o_A          335 NPIYLRHANSGVATDFMHWQIPLSRR-FRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAK-RHLGL  412 (481)
T ss_dssp             CCGGGCCTTTTTSCCGGGGSSSSCCC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSC-CCSSE
T ss_pred             CchhccCcccCCCCCcccccccCCCC-ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-CceeE
Confidence               0000            0111211 12345666676666677889999999999999999998 48988754 23455


Q ss_pred             EEecCCCCCCCHHHHHHHHhhcCeE-EccCCCCCCCCCCCCCeEEEecCcc-ccCCCCHHHHHHHHHHHHHHHHH
Q 013217          325 VLVDLRPMGIDGARVEKILDMASIT-LNKNSVPGDKSALVPGGIRIGSPAM-TTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       325 ~~v~~~~~~~~~~~~~~~L~~~gI~-v~~~~~p~~~~~~~~~~iRig~~~~-~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      +++.+...+....++.+.|.+.|+. +..    ..  ......+|+++... ++    ++|++++.+.|+++.+.
T Consensus       413 v~f~~~~~~~~~~~l~~~L~~~g~~~~~~----~~--~~g~~~lR~~~~~~~tt----~~di~~~~~~i~~~~~~  477 (481)
T 4e1o_A          413 VVFRLKGPNSLTENVLKEIAKAGRLFLIP----AT--IQDKLIIRFTVTSQFTT----RDDILRDWNLIRDAATL  477 (481)
T ss_dssp             EEEEESSCHHHHHHHHHHHHHHCSSBCEE----EE--ETTEEEEEEECCCTTCC----HHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCchHHHHHHHHHHHhCCeEEEEe----eE--ECCEEEEEEEeCCCCCC----HHHHHHHHHHHHHHHHH
Confidence            6666543222345677778777743 321    11  01234799996544 35    99999999999887764

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.93  E-value=6.2e-24  Score=208.06  Aligned_cols=326  Identities=13%  Similarity=0.048  Sum_probs=218.1

Q ss_pred             cCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CCCccceeeecCCcH
Q 013217           21 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSGS   96 (447)
Q Consensus        21 ~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~~~~~v~~~sGs   96 (447)
                      ..|+|..+++.  .|+.+.+++...+..  ..+|+..      ....++++...+++.+.+|.  +++.+   +.+++|+
T Consensus        24 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~~------~g~~~lr~~la~~l~~~~g~~~~~~~i---~~t~g~~   92 (376)
T 3ezs_A           24 RGLDLGIGEPQFETPKFIQDALKNHTHS--LNIYPKS------AFEESLRAAQRGFFKRRFKIELKENEL---ISTLGSR   92 (376)
T ss_dssp             CCCBCSSCCCCSCCCHHHHHHHHTTGGG--GGSCCCT------TCCHHHHHHHHHHHHHHHSCCCCGGGE---EEESSSH
T ss_pred             CEEEeCCCCCCCCCCHHHHHHHHHhhhh--cCCCCCC------CCCHHHHHHHHHHHHHHhCCCCCHHHE---EECcCcH
Confidence            45788777774  478999999887632  2234332      11234555556778788887  44432   2234556


Q ss_pred             HHHHHHHHHhcCC--CCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEE
Q 013217           97 PANFEVYTAILKP--HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII  174 (447)
Q Consensus        97 ~a~~~~~~al~~p--gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii  174 (447)
                      +++..++.++++|  ||+|++..|.|.++..        .+...|.  +++.++++++ +.+++ ++++.+.+ ++++|+
T Consensus        93 ~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~-~~~~~-~l~~~~~~-~~~~v~  159 (376)
T 3ezs_A           93 EVLFNFPSFVLFDYQNPTIAYPNPFYQIYEG--------AAKFIKA--KSLLMPLTKE-NDFTP-SLNEKELQ-EVDLVI  159 (376)
T ss_dssp             HHHHHHHHHHTTTCSSCEEEEEESCCTHHHH--------HHHHTTC--EEEEEECCGG-GTSCC-CCCHHHHH-HCSEEE
T ss_pred             HHHHHHHHHHcCCCCCCEEEEecCCcHhHHH--------HHHHcCC--EEEEcccCCC-CCcch-hHHhhhcc-CCCEEE
Confidence            9999999999999  9999999998876532        2334454  4555556533 23444 67777766 899999


Q ss_pred             EcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCC----------CCcccEEEeCCCccc--CCC
Q 013217          175 AGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP----------FKYCDVVTTTTHKSL--RGP  237 (447)
Q Consensus       175 ~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~----------~~~~Di~~~s~~K~l--~Gp  237 (447)
                      ++.++||+  ..+   +++|.++|+++|+++|+|++|.. +...+.....          ....++++.|+||++  +|.
T Consensus       160 ~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~  238 (376)
T 3ezs_A          160 LNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSE-IYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGL  238 (376)
T ss_dssp             ECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT-CBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGG
T ss_pred             EcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchh-hccCCCCCCHHHccccccccccCcEEEEecchhccCCccc
Confidence            98778875  555   66778889999999999999754 3332211110          113568999999997  466


Q ss_pred             CCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeee
Q 013217          238 RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVS  317 (447)
Q Consensus       238 ~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~  317 (447)
                      |.|+++.++      ++.+.+....... ..+++....+++..+++.  ...+++..+++.++++.+.+.|+  ++.  .
T Consensus       239 r~G~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~--~~~--~  305 (376)
T 3ezs_A          239 RSGFIAGDS------RLLEKYKAFRAYL-GYTSANAIQKASEAAWLD--DRHAEFFRNIYANNLKLARKIFK--NTL--I  305 (376)
T ss_dssp             CCEEEEECH------HHHHHHHHHHTTT-CCCCCHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHST--TCC--C
T ss_pred             eeEEEeeCH------HHHHHHHHHHhhh-cCCCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHhc--CCC--C
Confidence            779999877      7777776543322 234455555555556654  33457777888888888888886  664  2


Q ss_pred             CCCCCeeEEecCCCCCCCHHHHHHHHhh-cCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          318 GGSDNHLVLVDLRPMGIDGARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       318 ~~~~~~~~~v~~~~~~~~~~~~~~~L~~-~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      + ...+++|+++.    +..++.+.|.+ +||.+..+..++.. +...+.+|++++.  +    ++|++++++.|.++++
T Consensus       306 ~-~~~~~~~~~~~----~~~~~~~~l~~~~gi~v~~g~~~~~~-~~~~~~iRis~~~--~----~~~i~~~l~~l~~~l~  373 (376)
T 3ezs_A          306 Y-PYSFYVYLPVQ----NGENFAKTLYQNEGIITLPALYLGRN-RIGADYVRLALVY--D----TPLLEKPLEIIETYRE  373 (376)
T ss_dssp             C-SBSSEEEEECS----CHHHHHHHHHHHHCCBCEEGGGGCST-TTTTTEEEEECCS--C----HHHHHHHHHHHHHHHC
T ss_pred             C-CcceEEEEECC----CHHHHHHHHHHhCCEEEeCcHHhCCC-CCCCCeEEEEEcC--C----HHHHHHHHHHHHHHHH
Confidence            2 34566777775    56778777766 89999764333211 2235689999763  4    8999999999988775

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.93  E-value=1.1e-24  Score=217.08  Aligned_cols=341  Identities=17%  Similarity=0.070  Sum_probs=221.6

Q ss_pred             hcCeeEecCCC----CCCHHHHHHHhhhhhccC--CCCCCCCcccCchhHHHHHHHHHHHHHHHHcC---CCCCccceee
Q 013217           20 FKSLELIASEN----FTSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFN---LDENKWGVNV   90 (447)
Q Consensus        20 ~~~i~l~~~~n----~~~~~v~~a~~~~~~~~~--~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g---~~~~~~~~~v   90 (447)
                      +..|+|..+..    +.++.+.+++.+.+....  ..+|+..      ....++++...+++.+.+|   ++++    +|
T Consensus        43 ~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~------~g~~~lr~~la~~l~~~~g~~~~~~~----~v  112 (425)
T 1vp4_A           43 KDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTT------EGDPVLKQQILKLLERMYGITGLDED----NL  112 (425)
T ss_dssp             TTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCT------TCCHHHHHHHHHHHHHHHCCCSCCGG----GE
T ss_pred             CCceeCCCCCCCcccCCHHHHHHHHHHHHhhcchhhcCCCCC------CCCHHHHHHHHHHHHhccCCCCCCcc----cE
Confidence            45677755442    246789999887775410  1233221      1124565555566666668   4444    23


Q ss_pred             ecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhh--
Q 013217           91 QPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL--  167 (447)
Q Consensus        91 ~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~--  167 (447)
                      .+++|+ +++..++.++++|||+|++.+|.|.++..        .+...|.  +++.+++++ + .+|+++|++++++  
T Consensus       113 ~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~~~v~~~~-~-~~d~~~l~~~l~~~~  180 (425)
T 1vp4_A          113 IFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAIN--------AFRQYLA--NFVVVPLED-D-GMDLNVLERKLSEFD  180 (425)
T ss_dssp             EEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHTTTC--EEEEEEEET-T-EECHHHHHHHHHHHH
T ss_pred             EEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHH--------HHHHcCC--EEEEeccCC-C-CCCHHHHHHHHHhhh
Confidence            346665 89999999999999999999998876531        2334454  455555653 3 3999999998875  


Q ss_pred             -----hCCcEEE-EcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC-----CcccEEEeCCC
Q 013217          168 -----FRPKLII-AGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-----KYCDVVTTTTH  231 (447)
Q Consensus       168 -----~~~klii-~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~-----~~~Di~~~s~~  231 (447)
                           .++++|+ ++.++||+  ..+   +++|.++|+++|+++|+|++|+.+ ...+....++     ...+++++|+|
T Consensus       181 ~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~~~~~~i~~~s~s  259 (425)
T 1vp4_A          181 KNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGAL-RYEGETVDPIFKIGGPERVVLLNTFS  259 (425)
T ss_dssp             HTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTC-BCSSCCCCCHHHHHCTTTEEEEEEST
T ss_pred             hcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccc-cCCCCCCcCHHHhCCCCCEEEEeccc
Confidence                 3788884 56777775  444   578999999999999999998543 3222111111     12468899999


Q ss_pred             cccC-CCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHHH
Q 013217          232 KSLR-GPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-SPEFKVYQNKVVSNCRALASRLV  309 (447)
Q Consensus       232 K~l~-Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~-~~~~~~~~~~~~~~~~~l~~~L~  309 (447)
                      |+++ |.|.|++++++      ++.+.+.....+... +++....+++..+++... ....++..+++.++++.+.+.|+
T Consensus       260 K~~~~G~r~G~~~~~~------~~~~~l~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~  332 (425)
T 1vp4_A          260 KVLAPGLRIGMVAGSK------EFIRKIVQAKQSADL-CSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALE  332 (425)
T ss_dssp             TTTCGGGCEEEEECCH------HHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccceEEEeeCH------HHHHHHHHHhhhhcC-CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9985 55669999987      677666543222112 234445555555666531 12235667778888999999998


Q ss_pred             HC-----CcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHH
Q 013217          310 EL-----GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEF  384 (447)
Q Consensus       310 ~~-----g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di  384 (447)
                      +.     |+++..+ ...+++|+++.. +.+..++.+.|.++||.+..+...+. .+...+.+|++++.. +    ++|+
T Consensus       333 ~~~~~~~g~~~~~~-~~g~~~~~~~~~-~~~~~~l~~~l~~~gi~v~~g~~f~~-~~~~~~~iRis~~~~-~----~e~i  404 (425)
T 1vp4_A          333 EYFSDIPGVKWVKS-EGGLFIWLTLPE-GFDTWEMFEYAKRKKVFYVPGRVFKV-YDEPSPSMRLSFCLP-P----DEKI  404 (425)
T ss_dssp             HHSTTSTTCEECCC-SBSSEEEEECCT-TCCTTTTHHHHHHHTEECEEGGGGCT-TCCCCSEEEEECSSS-C----HHHH
T ss_pred             HhCCCCCceEEecC-CccEEEEEEcCC-CCCHHHHHHHHHHCCCEEECchhhcC-CCCCCCeEEEEeCCC-C----HHHH
Confidence            74     6877643 335567888753 44566777778777999875432211 111246899998754 4    8999


Q ss_pred             HHHHHHHHHHHHHH
Q 013217          385 VAIADFIHEGVEIT  398 (447)
Q Consensus       385 ~~l~~~i~~~l~~~  398 (447)
                      +++++.|++++...
T Consensus       405 ~~~l~~l~~~l~~~  418 (425)
T 1vp4_A          405 VEGIKRLREVVLEY  418 (425)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988754

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.93  E-value=7.2e-24  Score=211.44  Aligned_cols=340  Identities=13%  Similarity=0.087  Sum_probs=216.4

Q ss_pred             cCeeEecCCCCC-CHHHHHHHhhhhhcc--------C--CCCCCCCcccCchhHHHHHHHHHHHHHHHHcC----CCCCc
Q 013217           21 KSLELIASENFT-SRAVMEAVGSCLTNK--------Y--SEGLPGKRYYGGNEYIDELETLCQKRALAAFN----LDENK   85 (447)
Q Consensus        21 ~~i~l~~~~n~~-~~~v~~a~~~~~~~~--------~--~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g----~~~~~   85 (447)
                      ..|.|..++|+. ++.+.+++.......        .  ...|+..      ....++++.+.+++.+.+|    ++++.
T Consensus        37 ~~i~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~------~g~~~lr~~la~~~~~~~g~~~~~~~~~  110 (428)
T 1iay_A           37 GVIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDY------HGLPEFRKAIAKFMEKTRGGRVRFDPER  110 (428)
T ss_dssp             SBEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCT------TCCHHHHHHHHHHHHHHTTTCSCCCTTS
T ss_pred             ceeeeccccchhhHHHHHHHHHhccccccccccccccHhhcCCCCC------CCcHHHHHHHHHHHHHhcCCCCCCChhh
Confidence            346787888875 456777776432100        0  0122221      1134566555566666666    44543


Q ss_pred             cceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHH
Q 013217           86 WGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEK  163 (447)
Q Consensus        86 ~~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~  163 (447)
                          |.+++|+ +++..++.++++|||+|++..|.|.++...       .....|.  ++++++.++ +++.+|++++++
T Consensus       111 ----i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~-------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~  177 (428)
T 1iay_A          111 ----VVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRD-------LRWRTGV--QLIPIHCESSNNFKITSKAVKE  177 (428)
T ss_dssp             ----CEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHH-------TTTTTCC--EEEEECCCTTTTTCCCHHHHHH
T ss_pred             ----EEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHHH-------HHHhcCC--EEEEeecCCccCCcCCHHHHHH
Confidence                3346766 899999999999999999999988765310       1113444  555555653 245789999999


Q ss_pred             Hhhhh-----CCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC----Cc-------
Q 013217          164 TAILF-----RPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF----KY-------  222 (447)
Q Consensus       164 ~~~~~-----~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~----~~-------  222 (447)
                      ++++.     ++++|+++.++||+  ..+   +++|.++|+++|+++|+|++|..+ ...+....++    ..       
T Consensus       178 ~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~-~~~~~~~~~~~~~~~~~~~~~~~  256 (428)
T 1iay_A          178 AYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAAT-VFDTPQFVSIAEILDEQEMTYCN  256 (428)
T ss_dssp             HHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGG-CCSSSCCCCHHHHHTSGGGTTSC
T ss_pred             HHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEecccccc-ccCCCCccCHHHhccccccccCC
Confidence            88752     68888888777764  667   899999999999999999998543 2222111111    01       


Q ss_pred             cc--EEEeCCCccc--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc--ChhHHHHHHH
Q 013217          223 CD--VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ--SPEFKVYQNK  296 (447)
Q Consensus       223 ~D--i~~~s~~K~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~--~~~~~~~~~~  296 (447)
                      .|  +++.|+||++  +|.|.|+++++++     ++.+.+.....+   .+.+....+++..+++...  ...+++..++
T Consensus       257 ~d~viv~~s~sK~~g~~Glr~G~~~~~~~-----~~~~~~~~~~~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  328 (428)
T 1iay_A          257 KDLVHIVYSLSKDMGLPGFRVGIIYSFND-----DVVNCARKMSSF---GLVSTQTQYFLAAMLSDEKFVDNFLRESAMR  328 (428)
T ss_dssp             TTSEEEEEESTTTSSCGGGCEEEEEESCH-----HHHHHHHHHHTT---SCCCHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEecchhhcCCCCceEEEEEeCCH-----HHHHHHHHHHhc---ccCCHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence            47  8899999998  5667799998542     676666554322   1234444444443443210  1124567778


Q ss_pred             HHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCC-----CCHHHHHHHHhh-cCeEEccCCCCCCCCCCCCCeEEEe
Q 013217          297 VVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMG-----IDGARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIG  370 (447)
Q Consensus       297 ~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~~~L~~-~gI~v~~~~~p~~~~~~~~~~iRig  370 (447)
                      +.++++.+.+.|.+.|+++..+ ....++|+++....     .+..++.+.|.+ +||.+..+...+.   ..++.+|++
T Consensus       329 ~~~~~~~l~~~L~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~---~~~~~iRis  404 (428)
T 1iay_A          329 LGKRHKHFTNGLEVVGIKCLKN-NAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFEC---QEPGWFRVC  404 (428)
T ss_dssp             HHHHHHHHHHHHHHTTCCBCCC-SSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTC---SSSSEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCcccCC-CeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCC---CCCCEEEEE
Confidence            8889999999998888876543 23556777775321     123467777765 5999975422211   124589999


Q ss_pred             cCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          371 SPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       371 ~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      ++ .++    +++++++++.|+++++.
T Consensus       405 ~~-~~~----~e~i~~~~~~l~~~l~~  426 (428)
T 1iay_A          405 FA-NMD----DGTVDIALARIRRFVGV  426 (428)
T ss_dssp             CS-SSC----HHHHHHHHHHHHHHHHT
T ss_pred             Ee-cCC----HHHHHHHHHHHHHHHhc
Confidence            87 344    99999999999988763

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.93  E-value=3.3e-24  Score=213.05  Aligned_cols=341  Identities=14%  Similarity=0.106  Sum_probs=218.2

Q ss_pred             cCeeEecCC------CCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHH------cC--CCCCcc
Q 013217           21 KSLELIASE------NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA------FN--LDENKW   86 (447)
Q Consensus        21 ~~i~l~~~~------n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~------~g--~~~~~~   86 (447)
                      ..|+|..+.      ...++.+++++...+.+....+|+..      ....++++...+++.+.      .|  ++++. 
T Consensus        34 ~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~------~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~-  106 (416)
T 1bw0_A           34 PIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPT------VGSPEAREAVATWWRNSFVHKEELKSTIVKDN-  106 (416)
T ss_dssp             CCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCT------TCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGG-
T ss_pred             CeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcCCC------CCCHHHHHHHHHHHHhhhcccccCCCCCCcce-
Confidence            457776554      24589999999887754222234321      11234554334444421      12  34432 


Q ss_pred             ceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-CCCCCHHHHHHH
Q 013217           87 GVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKT  164 (447)
Q Consensus        87 ~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~  164 (447)
                         |.+++|+ +|+..++.++++|||+|++.+|.|.++..        .+...|.  +++.++++++ ++.+|+++|+++
T Consensus       107 ---v~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~  173 (416)
T 1bw0_A          107 ---VVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYET--------VCKAYGI--GMHFYNCRPENDWEADLDEIRRL  173 (416)
T ss_dssp             ---EEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHH--------HHHHTTC--EEEEEEEEGGGTTEECHHHHHHH
T ss_pred             ---EEEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHH--------HHHHcCc--EEEEeecCcccCCCCCHHHHHHH
Confidence               3345654 89999999999999999999998876531        2334454  4445555433 467999999999


Q ss_pred             hhhhCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhcccccccc----CCCCCC-----cccEEEeCC
Q 013217          165 AILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV----VADPFK-----YCDVVTTTT  230 (447)
Q Consensus       165 ~~~~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~----~~~~~~-----~~Di~~~s~  230 (447)
                      +++ ++++|+++.++||+  ..+   +++|.++|+++|+++|+|++|.. +...+.    ...++.     ..+++++|+
T Consensus       174 l~~-~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~  251 (416)
T 1bw0_A          174 KDD-KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAG-MVFKGKDPNATFTSVADFETTVPRVILGGT  251 (416)
T ss_dssp             CCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTT-CBCCSSCTTCCCCCTTSSCCSCCEEEEEES
T ss_pred             hcc-CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccc-cccCCCCCCCCccCHHHccCCCcEEEEecc
Confidence            976 78888888777775  666   89999999999999999999754 333322    111121     124788999


Q ss_pred             Cccc--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHH
Q 013217          231 HKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRL  308 (447)
Q Consensus       231 ~K~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L  308 (447)
                      ||++  +|.|.|+++++++......+...+.....  ...+++....+++..+++.....++++..+++.++++.+.+.|
T Consensus       252 sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  329 (416)
T 1bw0_A          252 AKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGM--LVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHI  329 (416)
T ss_dssp             TTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHH--HHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCCCCceEEEEEeeCchhhHHHHHHHHHHHhc--cccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            9986  46678999987730000012222221100  1124456666666667764333456778888999999999999


Q ss_pred             HHC-CcEeeeCCCCCeeEEecCCC----CCCCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHH
Q 013217          309 VEL-GYKLVSGGSDNHLVLVDLRP----MGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEK  382 (447)
Q Consensus       309 ~~~-g~~~~~~~~~~~~~~v~~~~----~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~  382 (447)
                      ++. |+.+..+ ....++|+.+..    ...+..++.+.| +++||.+..+...+     .++.+|+++.  ++    ++
T Consensus       330 ~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~-----~~~~iRis~~--~~----~e  397 (416)
T 1bw0_A          330 GECIGLAPTMP-RGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFH-----APGFTRLTTT--RP----VE  397 (416)
T ss_dssp             TTSTTEEECCC-CBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGT-----CTTEEEEECC--SC----HH
T ss_pred             HhCCCCcccCC-CeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccC-----CCCeEEEEec--CC----HH
Confidence            885 8876543 234456666532    123566777766 68999996543221     1458999973  33    88


Q ss_pred             HHHHHHHHHHHHHHH
Q 013217          383 EFVAIADFIHEGVEI  397 (447)
Q Consensus       383 di~~l~~~i~~~l~~  397 (447)
                      ++++.++.|.++++.
T Consensus       398 ~l~~~l~~l~~~l~~  412 (416)
T 1bw0_A          398 VYREAVERIKAFCQR  412 (416)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999888764

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.93  E-value=2.7e-24  Score=215.89  Aligned_cols=341  Identities=14%  Similarity=0.109  Sum_probs=209.8

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHc--CCCCCccceeeecCCc
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF--NLDENKWGVNVQPLSG   95 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~--g~~~~~~~~~v~~~sG   95 (447)
                      +..|+|..+++.  .+|.|++++...+.+...  ..+...|+......++++.+.+++.  +  +++++    .|.+++|
T Consensus        69 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~--~~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~~~~----~i~~t~G  140 (449)
T 3qgu_A           69 AKIISLGIGDTTEPLPKYIADAMAKAAAGLAT--REGYSGYGAEQGQGALREAVASTFY--GHAGRAAD----EIFISDG  140 (449)
T ss_dssp             CCCEECSSCCCCCCCCHHHHHHHHHHHHGGGG--SCCCCCSTTTTCCHHHHHHHHHHHH--TTTTCCGG----GEEEESC
T ss_pred             CCEEEeeCCCCCCCCCHHHHHHHHHHHHhhcc--ccCCCCCCCCCCcHHHHHHHHHHHH--cCCCCCHH----HEEEccC
Confidence            356888777663  589999999887764210  0111112222223455543333333  3  44554    3344677


Q ss_pred             H-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccce--------eEEEecccCCC-CCCCCHHHHHHHh
Q 013217           96 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY--------FESMPYRLDES-TGLVDYDMLEKTA  165 (447)
Q Consensus        96 s-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~--------~~~~~~~~~~~-~~~id~~~l~~~~  165 (447)
                      + +++..+ .++++|||+|++.+|.|.++..        .+...|..        ++++.++++++ +...|++++    
T Consensus       141 ~~~al~~~-~~l~~~gd~Vl~~~p~~~~~~~--------~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  207 (449)
T 3qgu_A          141 SKCDIARI-QMMFGSKPTVAVQDPSYPVYVD--------TSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA----  207 (449)
T ss_dssp             HHHHHHHH-HHHHCSSSCEEEEESCCTHHHH--------HHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC----
T ss_pred             HHHHHHHH-HHHhCCCCEEEEcCCCChhHHH--------HHHHcCCcccccccccceeEEEecccccCCcCChhHc----
Confidence            6 777766 8889999999999999877642        12233332        11445555533 344554432    


Q ss_pred             hhhCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC------CcccEEEeCCCccc
Q 013217          166 ILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF------KYCDVVTTTTHKSL  234 (447)
Q Consensus       166 ~~~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~------~~~Di~~~s~~K~l  234 (447)
                        .++++|+++.++||+  ..+   +++|+++|+++|+++|+|++|.. +...+..+.++      ...++++.|++|++
T Consensus       208 --~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  284 (449)
T 3qgu_A          208 --KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYAL-YISNPDCPKTIYEIPGADEVAIETCSFSKYA  284 (449)
T ss_dssp             --CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGG-GCCCTTSCSSGGGSTTGGGTEEEEEECSGGG
T ss_pred             --CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHh-hhcCCCCCCCHhhccCCCCcEEEEecchhhc
Confidence              378999998888876  444   78888999999999999999854 33332211111      13568999999997


Q ss_pred             --CCCCCceEEeecCCcch--hhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH
Q 013217          235 --RGPRGGMIFFKKDPVLG--VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE  310 (447)
Q Consensus       235 --~Gp~gG~i~~~~~~~~~--~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~  310 (447)
                        +|+|.|+++++++....  ..+...+....... .++++....++...++........++..+++.++++.+.+.|++
T Consensus       285 g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  363 (449)
T 3qgu_A          285 GFTGVRLGWTVVPKALKYANGEPVHADWNRVMTTC-FNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTE  363 (449)
T ss_dssp             TCTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHS-CCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccceeEEEecCHHHHhhhhhhHHHHHHHHhhcc-cCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              47788999998742100  00011222211111 22334444444444444311134567788899999999999999


Q ss_pred             CCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHH
Q 013217          311 LGYKLVSGGSDNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIAD  389 (447)
Q Consensus       311 ~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~  389 (447)
                      .|+++..+ ...+++|+++.  +.+..++.+.| +++||.+..+..++   +...++||++..  ++    +++++++++
T Consensus       364 ~g~~~~~~-~~~~~~~~~~~--~~~~~~~~~~l~~~~gI~v~pg~~f~---~~~~~~iRis~~--~~----~e~i~~~l~  431 (449)
T 3qgu_A          364 MGFSVYGG-DDAPYIWVGFP--GKPSWDVFAEILERCNIVTTPGSGYG---PAGEGFVRASAF--GS----RENILEAVR  431 (449)
T ss_dssp             TTCCEEES-SSSSEEEEECT--TSCHHHHHHHHHHHHCEECEEGGGGC---GGGTTEEEEECC--SC----HHHHHHHHH
T ss_pred             CCCeeeCC-CCeeEEEEECC--CCCHHHHHHHHHHHCCEEEecchHhC---CCCCCeEEEEec--CC----HHHHHHHHH
Confidence            99887754 34567788876  55677776655 55699987543222   123468999942  34    899999999


Q ss_pred             HHHHHHHH
Q 013217          390 FIHEGVEI  397 (447)
Q Consensus       390 ~i~~~l~~  397 (447)
                      .|+++++.
T Consensus       432 ~l~~~~~~  439 (449)
T 3qgu_A          432 RFKEAYGK  439 (449)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHHh
Confidence            99888763

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.93  E-value=9.6e-24  Score=211.03  Aligned_cols=346  Identities=15%  Similarity=0.073  Sum_probs=214.3

Q ss_pred             CeeEecCCCCC-CHHHHHHHhhhhhccCC--CCCCCC---cccCchhHHHHHHHHHHHHHHHHcC----CCCCccceeee
Q 013217           22 SLELIASENFT-SRAVMEAVGSCLTNKYS--EGLPGK---RYYGGNEYIDELETLCQKRALAAFN----LDENKWGVNVQ   91 (447)
Q Consensus        22 ~i~l~~~~n~~-~~~v~~a~~~~~~~~~~--~g~~~~---~~~~g~~~~~~le~~~~~~~~~~~g----~~~~~~~~~v~   91 (447)
                      .|+|-.++|.. .+.+.+++.........  +|..+.   ..|+......++++...+++.+.++    ++++.+   +.
T Consensus        40 ~i~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v---~~  116 (435)
T 3piu_A           40 IIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHL---VL  116 (435)
T ss_dssp             BEECSSCCCCSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGE---EE
T ss_pred             eEEeccccccccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHE---EE
Confidence            46777788865 45666666654331110  010000   0122222234566555555555444    444432   22


Q ss_pred             cCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccc-cccceeEEEecccCCC-CCCCCHHHHHHHhhhh-
Q 013217           92 PLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVS-GTSIYFESMPYRLDES-TGLVDYDMLEKTAILF-  168 (447)
Q Consensus        92 ~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~-~~~id~~~l~~~~~~~-  168 (447)
                      +++|++|+..++.++++|||+|++..|.|.++..        .+. ..|.  ++++++++++ ++.+|+++|++++++. 
T Consensus       117 ~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~--------~~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~l~~~~  186 (435)
T 3piu_A          117 TAGATSANETFIFCLADPGEAVLIPTPYYPGFDR--------DLKWRTGV--EIVPIHCTSSNGFQITETALEEAYQEAE  186 (435)
T ss_dssp             EEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HTTTTTCC--EEEEEECCGGGTSCCCHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHhcCCCCeEEECCCccccHHH--------HHHHhcCC--EEEEeeCCCccCCcCCHHHHHHHHHHHH
Confidence            3444599999999999999999999998876532        122 3454  5555556532 4568999999998763 


Q ss_pred             ----CCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC---------------Cccc
Q 013217          169 ----RPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---------------KYCD  224 (447)
Q Consensus       169 ----~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~---------------~~~D  224 (447)
                          ++++|+++.++||+  ..+   +++|.++|++||+++|+|++|..+ ...+....++               ....
T Consensus       187 ~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  265 (435)
T 3piu_A          187 KRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGT-AFSSPSFISVMEVLKDRNCDENSEVWQRV  265 (435)
T ss_dssp             HTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGG-CCSSSCCCCHHHHHHC-------CGGGGE
T ss_pred             hcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCCCCCcCHHHhccccccccccCCCCCE
Confidence                78898888777775  444   578888999999999999998543 3222111111               1123


Q ss_pred             EEEeCCCccc--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc--ChhHHHHHHHHHHH
Q 013217          225 VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ--SPEFKVYQNKVVSN  300 (447)
Q Consensus       225 i~~~s~~K~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~--~~~~~~~~~~~~~~  300 (447)
                      +++.|+||++  +|.|.|+++++++     ++.+.+......+   +.+....++++.++....  ....++..+++.++
T Consensus       266 i~i~s~sK~~g~~G~r~G~~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  337 (435)
T 3piu_A          266 HVVYSLSKDLGLPGFRVGAIYSNDD-----MVVAAATKMSSFG---LVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQR  337 (435)
T ss_dssp             EEEEESSSSSCCGGGCEEEEEESCH-----HHHHHHHHHGGGS---CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeeecccCCCceeEEEEEeCCH-----HHHHHHHHHhhcC---CCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence            8889999998  4667799998653     5666555432221   223333344444443211  11235667788888


Q ss_pred             HHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCCC-----CHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCcc
Q 013217          301 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGI-----DGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAM  374 (447)
Q Consensus       301 ~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~  374 (447)
                      ++.+.+.|.+.|+++..+ ...+++|+++.....     +..++.+.| +++||.+..+..++   +..++.+|+++...
T Consensus       338 ~~~l~~~L~~~g~~~~~~-~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~---~~~~~~iRi~~~~~  413 (435)
T 3piu_A          338 QKKLVSGLQKSGISCLNG-NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCH---CTEPGWFRVCFANL  413 (435)
T ss_dssp             HHHHHHHHHTTTCEECCC-CSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGT---CSSTTEEEEECSSS
T ss_pred             HHHHHHHHHhcCCcccCC-CeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccC---CCCCCEEEEEeeCC
Confidence            899999999889887654 334667777753110     234565655 45599997543222   12356899998654


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          375 TTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       375 ~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                       +    +++++++++.|.++++..
T Consensus       414 -~----~e~i~~~l~~l~~~l~~~  432 (435)
T 3piu_A          414 -P----ERTLDLAMQRLKAFVGEY  432 (435)
T ss_dssp             -C----HHHHHHHHHHHHHHHHHH
T ss_pred             -C----HHHHHHHHHHHHHHHHHH
Confidence             5    899999999999988643

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.93  E-value=5.1e-24  Score=216.65  Aligned_cols=334  Identities=11%  Similarity=0.016  Sum_probs=213.5

Q ss_pred             CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh----
Q 013217           31 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI----  106 (447)
Q Consensus        31 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al----  106 (447)
                      ..++++++++.....|.    +  ...+.......++|+.+++++++++|+++.+.  .+.+++|++||..++.+.    
T Consensus       111 ~~~~~v~~~~~~~~~n~----~--~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~--~~~t~ggt~a~~~al~~ar~~~  182 (497)
T 2qma_A          111 PLMPAVAAEAMIAALNQ----S--MDSWDQASSATYVEQKVVNWLCDKYDLSEKAD--GIFTSGGTQSNQMGLMLARDWI  182 (497)
T ss_dssp             CBHHHHHHHHHHHHHCC----C--TTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCE--EEEESSHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHhhcc----c--ccchhhChHHHHHHHHHHHHHHHHhCCCCCCC--eEEcCCchHHHHHHHHHHHHHH
Confidence            45677877776554442    1  11133345677899888999999999975222  233466679998888763    


Q ss_pred             c---------CC------CC-EEEEecCCCCcccCCCcccccccccccccee-EEEecccCCCCCCCCHHHHHHHhhhh-
Q 013217          107 L---------KP------HD-RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYF-ESMPYRLDESTGLVDYDMLEKTAILF-  168 (447)
Q Consensus       107 ~---------~p------gd-~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~id~~~l~~~~~~~-  168 (447)
                      +         .+      || +|++..+.|.+...        .+...|.+. +++.++++ +++.+|+++|++++++. 
T Consensus       183 ~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~--------~~~~~g~g~~~v~~v~~~-~~~~~d~~~L~~~i~~~~  253 (497)
T 2qma_A          183 ADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQK--------SASWMGLGEKAVMTVDAN-ADGTMDITKLDEVIAQAK  253 (497)
T ss_dssp             HHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHH--------HHHHTTSCGGGEEEECBC-TTSSBCGGGHHHHHHHHH
T ss_pred             HHhhcccchhhcccccccCCeEEEECCCchHHHHH--------HHHHcCCCcccEEEEecC-CCCcCCHHHHHHHHHHHH
Confidence            3         13      46 78888777765431        223344322 34455565 46889999999998763 


Q ss_pred             --CCc--EEEEcCCCCC-C-CCChHHHHHHHHHhCCEEEEehhhhccccccccC--CCCCCcccEEEeCCCcccCCCCC-
Q 013217          169 --RPK--LIIAGASAYP-R-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFKYCDVVTTTTHKSLRGPRG-  239 (447)
Q Consensus       169 --~~k--lii~~~~~~~-~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~--~~~~~~~Di~~~s~~K~l~Gp~g-  239 (447)
                        .++  +|+++.++++ + ..|+++|+++|+++|+++++|++|+.+....+..  ...+..+|++++|+|||+.+|.+ 
T Consensus       254 ~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p~~~  333 (497)
T 2qma_A          254 AEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSSHKSRLKGVERAHSISVDFHKLFYQTISC  333 (497)
T ss_dssp             HTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCCSSC
T ss_pred             HCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCcchHhhcCcccCCEEEEcchhccCCCcce
Confidence              233  6777644444 3 7899999999999999999999987765543311  01123579999999999988876 


Q ss_pred             ceEEeecCCcchhhHHHHhhhc---cCCCCCCCCcHHH----------HHHHHHHHHHhcChhHHHHHHHHHHHHHHHHH
Q 013217          240 GMIFFKKDPVLGVELESAINNA---VFPGLQGGPHNHT----------IGGLAVCLKHAQSPEFKVYQNKVVSNCRALAS  306 (447)
Q Consensus       240 G~i~~~~~~~~~~~~~~~i~~~---~~~~~~g~p~~~~----------~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~  306 (447)
                      |+++++++     ...+.+...   ........++...          ..+++.+++.+...+++++.++..++++++.+
T Consensus       334 G~l~~~~~-----~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~  408 (497)
T 2qma_A          334 GALLVNDK-----SNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVAD  408 (497)
T ss_dssp             EEEEESCG-----GGGGGGCC--------------------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCH-----HHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            99998874     322222210   0000000122111          12345567766656778889999999999999


Q ss_pred             HHHH-CCcEeeeCCCCCeeEEecCCCCCCCH----HHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEec-CccccCCCC
Q 013217          307 RLVE-LGYKLVSGGSDNHLVLVDLRPMGIDG----ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS-PAMTTRGFS  380 (447)
Q Consensus       307 ~L~~-~g~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~-~~~~~~g~~  380 (447)
                      .|++ .|++++.+. ...++++.+.+.+.+.    .++.+.|.+.|+.+.....+     .....+|+++ +..++    
T Consensus       409 ~L~~~~~~~~~~~~-~~~~v~f~~~~~~~~~~~l~~~l~~~l~~~G~~~~~~~~~-----~g~~~lRis~~~~~~t----  478 (497)
T 2qma_A          409 MIRTNDQFELLAEP-SLSTVLFRATHETADLDELNKALRLEALTRGIAVLGETIV-----DGKTALKFTILNPCLT----  478 (497)
T ss_dssp             HHHTCTTEEECSCC-SSSEEEEEECCSSSCHHHHHHHHHHHHHHHTSCBCEEEEE-----TTEEEEEEECCCTTCC----
T ss_pred             HHhhCCCeEEEcCC-CceEEEEEEcCCccCHHHHHHHHHHHHHhCCCEEEEeeEE-----CCEEEEEEEecCCCCC----
Confidence            9998 488886543 2345555554322221    34566777889877421111     1134799997 66777    


Q ss_pred             HHHHHHHHHHHHHHHH
Q 013217          381 EKEFVAIADFIHEGVE  396 (447)
Q Consensus       381 ~~di~~l~~~i~~~l~  396 (447)
                      ++|++++.+.|++++.
T Consensus       479 ~edi~~~~~~l~~~~~  494 (497)
T 2qma_A          479 TSDFESLLSKINMLAV  494 (497)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988765

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.93  E-value=1.2e-24  Score=219.75  Aligned_cols=312  Identities=11%  Similarity=-0.021  Sum_probs=207.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHcCCCCCc------cceeeecCCcHHHHHHHHHHhc-------------------CCCCEE
Q 013217           59 GGNEYIDELETLCQKRALAAFNLDENK------WGVNVQPLSGSPANFEVYTAIL-------------------KPHDRI  113 (447)
Q Consensus        59 ~g~~~~~~le~~~~~~~~~~~g~~~~~------~~~~v~~~sGs~a~~~~~~al~-------------------~pgd~V  113 (447)
                      ...+...++|+.+.+++++++|.+.+.      ....+.+++||+||+.++.+..                   .|++.|
T Consensus       106 ~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v  185 (475)
T 3k40_A          106 IASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVG  185 (475)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEE
T ss_pred             cCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEE
Confidence            345667899999999999999998531      0013445778899988777652                   145789


Q ss_pred             EEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhC-----CcEEEEcCC-CCCC-CCCh
Q 013217          114 MGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR-----PKLIIAGAS-AYPR-DFDY  186 (447)
Q Consensus       114 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~-----~klii~~~~-~~~~-~~~~  186 (447)
                      ++....|.+..        +.+...|.  +++.++++ +++ +|+++|++++++.+     |.+|+++.+ +..+ ..|+
T Consensus       186 i~s~~~H~s~~--------~~~~~~g~--~~~~v~~d-~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l  253 (475)
T 3k40_A          186 YCSDQAHSSVE--------RAGLLGGV--KLRSVQSE-NHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYL  253 (475)
T ss_dssp             EEETTSCHHHH--------HHHHHHTC--EEEEECCB-TTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCH
T ss_pred             EECCCchHHHH--------HHHHHcCC--ceEEEECC-CCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCH
Confidence            99988876643        23344554  55566676 467 99999999997631     666666633 3333 7899


Q ss_pred             HHHHHHHHHhCCEEEEehhhhccccccccCC---CCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhH-HHHhhh-
Q 013217          187 PRMRQIADAVGALLMMDMAHISGLVAASVVA---DPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVEL-ESAINN-  260 (447)
Q Consensus       187 ~~i~~ia~~~g~~livD~a~~~g~~~~~~~~---~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~-~~~i~~-  260 (447)
                      ++|+++|++||+++++|+||+.+....+...   ..+..+|++++++|||+.+|.| |+++++++     .. .+.+.. 
T Consensus       254 ~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~-----~~l~~~~~~~  328 (475)
T 3k40_A          254 DECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDP-----SWVVNAFNVD  328 (475)
T ss_dssp             HHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSG-----GGC-------
T ss_pred             HHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCH-----HHHHHHhcCC
Confidence            9999999999999999999877654332211   1223579999999999999988 88888874     22 111110 


Q ss_pred             --cc------------CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEeeeCCCCCeeE
Q 013217          261 --AV------------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGSDNHLV  325 (447)
Q Consensus       261 --~~------------~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~  325 (447)
                        ..            .....++.. ....+++.+++.+...+++++.++..++++++++.|++ .|++++.+. ...++
T Consensus       329 ~~yl~~~~~~~~~~~~~~~~~~sr~-~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~-~~~iv  406 (475)
T 3k40_A          329 PLYLKHDMQGSAPDYRHWQIPLGRR-FRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEI-NMGLV  406 (475)
T ss_dssp             --------------------CCCGG-GTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCC-BTTEE
T ss_pred             ccccCCCcCCCCCCcccccccCCCc-ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC-ceEEE
Confidence              00            000111211 23455667777766677889999999999999999998 499987643 34455


Q ss_pred             EecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCcc-ccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          326 LVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAM-TTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       326 ~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~-~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      ++.+...+....++.+.|.+.|+.+-.   |..  ......+|+++... ++    ++|++++++.|+++.+..
T Consensus       407 ~f~~~~~~~~~~~l~~~L~~~g~~~~~---~~~--~~g~~~lR~~~~~~~tt----~~di~~~~~~i~~~~~~~  471 (475)
T 3k40_A          407 CFRLKGSNERNEALLKRINGRGHIHLV---PAK--IKDVYFLRMAICSRFTQ----SEDMEYSWKEVSAAADEM  471 (475)
T ss_dssp             EEEESSCHHHHHHHHHHHHHHTSCBCE---EEE--ETTEEEEEEECCCTTCC----HHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCchHHHHHHHHHHHhCCcEEEE---eeE--ECCEEEEEEEeCCCCCC----HHHHHHHHHHHHHHHHHH
Confidence            555543222346677778777754311   111  11235799996533 45    999999999999887643

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.93  E-value=5.6e-24  Score=209.61  Aligned_cols=321  Identities=14%  Similarity=0.143  Sum_probs=212.3

Q ss_pred             eeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHH
Q 013217           23 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV  102 (447)
Q Consensus        23 i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~  102 (447)
                      +++-.+...+++.+++++...+.+.+        | ...+...+++    +.+++++|.+.     .+.++||++|+..+
T Consensus         4 ~~~~~~~~~~~~~~~~a~~~~~~~~~--------~-~~~~~~~~l~----~~la~~~~~~~-----~i~~~sGt~a~~~a   65 (390)
T 3b8x_A            4 INYPLASSTWDDLEYKAIQSVLDSKM--------F-TMGEYVKQYE----TQFAKTFGSKY-----AVMVSSGSTANLLM   65 (390)
T ss_dssp             -CBCSCCCCCCHHHHHHHHHHHHHTC--------C-SSCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHH
T ss_pred             eeccCCCCCCCHHHHHHHHHHHHcCC--------C-CCChHHHHHH----HHHHHHHCCCc-----EEEECCHHHHHHHH
Confidence            33334677889999999988876521        1 1223344554    67888999863     35569999999999


Q ss_pred             HHHh-------cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEE
Q 013217          103 YTAI-------LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIA  175 (447)
Q Consensus       103 ~~al-------~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~  175 (447)
                      +.++       +++||+|+++.++|.++..        .+...|.  +++.++++++++.+|+++|++++++ +|++|++
T Consensus        66 l~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~  134 (390)
T 3b8x_A           66 IAALFFTKKPRLKKGDEIIVPAVSWSTTYY--------PLQQYGL--RVKFVDIDINTLNIDIESLKEAVTD-STKAILT  134 (390)
T ss_dssp             HHHTTSSSSCSCCTTCEEEEESSSCHHHHH--------HHHHTTC--EEEEECBCTTTCSBCHHHHHHHCCT-TEEEEEE
T ss_pred             HHHHHhhhhcCCCCcCEEEECCCCcHHHHH--------HHHHcCC--EEEEEecCccccCcCHHHHHHHhCc-CCeEEEE
Confidence            9998       8899999999998877642        2234454  5666667765688999999999987 8899888


Q ss_pred             cCCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCC--CcccCCCCCceEEeecCCcchhh
Q 013217          176 GASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTT--HKSLRGPRGGMIFFKKDPVLGVE  253 (447)
Q Consensus       176 ~~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~--~K~l~Gp~gG~i~~~~~~~~~~~  253 (447)
                      +. ..+...|+++|.++|+++|+++++|++|+.|....+ ..... ..|+.++|.  +|.+.++.||+++++++     +
T Consensus       135 ~~-~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~-~~~g~-~~~~~~~s~~~~k~~~~g~gG~~~~~~~-----~  206 (390)
T 3b8x_A          135 VN-LLGNPNNFDEINKIIGGRDIILLEDNCESMGATFNN-KCAGT-FGLMGTFSSFYSNHIATMEGGCIVTDDE-----E  206 (390)
T ss_dssp             EC-GGGCCCCHHHHHHHHTTSCCEEEEECTTCTTCEETT-EETTS-SSSEEEEECCTTSSSCSSSCEEEEESCH-----H
T ss_pred             EC-CccChhhHHHHHHHHHHcCCEEEEECcCcccCEECC-ccccc-ccceEEEEccCCCCCccCCceEEEeCCH-----H
Confidence            63 122357999999999999999999999987876532 11111 135555442  45566778899998863     4


Q ss_pred             HHHHhhhccCCC------------------------------C-CCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHH
Q 013217          254 LESAINNAVFPG------------------------------L-QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCR  302 (447)
Q Consensus       254 ~~~~i~~~~~~~------------------------------~-~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~  302 (447)
                      +.+++......+                              . .++++....++++ ++     ..+++..++..++++
T Consensus       207 l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~-~l-----~~l~~~~~~~~~~~~  280 (390)
T 3b8x_A          207 IYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIE-QL-----KKLPRFISVRRKNAE  280 (390)
T ss_dssp             HHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHH-HH-----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHH-HH-----HHHHHHHHHHHHHHH
Confidence            544433211111                              0 1123333332222 22     235677888899999


Q ss_pred             HHHHHHHHC-CcEeeeCCCC-C-eeEEecCCC-CCCCHHHHHHHHhhcCeEEccCCCCCCC--C-CC-------------
Q 013217          303 ALASRLVEL-GYKLVSGGSD-N-HLVLVDLRP-MGIDGARVEKILDMASITLNKNSVPGDK--S-AL-------------  362 (447)
Q Consensus       303 ~l~~~L~~~-g~~~~~~~~~-~-~~~~v~~~~-~~~~~~~~~~~L~~~gI~v~~~~~p~~~--~-~~-------------  362 (447)
                      ++.+.|.+. |+++...... + +.+++.+.. .+.+.+++.+.|.++||.++... |+..  . +.             
T Consensus       281 ~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~  359 (390)
T 3b8x_A          281 YFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECRPIV-TGNFLKNTDVLKYFDYTVHNNVD  359 (390)
T ss_dssp             HHHHHHTTCSSEEECCCCSBCCCCEEEEEECTTSCCCHHHHHHHHHHTTBCCBCST-TSSGGGCHHHHTTCEEEESSCCH
T ss_pred             HHHHHhcCCCCcccCCCCCCcccEEEEEEecCcCcccHHHHHHHHHHCCCCeeeec-CCchhhcchhhhcCCCCCcCCCh
Confidence            999999884 7776543211 2 224444442 14578889999999999998632 1110  1 00             


Q ss_pred             -----CCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217          363 -----VPGGIRIGSPAMTTRGFSEKEFVAIADFI  391 (447)
Q Consensus       363 -----~~~~iRig~~~~~~~g~~~~di~~l~~~i  391 (447)
                           ..+.||++++..+|    ++|++++++.|
T Consensus       360 ~~~~~~~~~l~l~~~~~~t----~~di~~i~~~l  389 (390)
T 3b8x_A          360 NAEYLDKNGLFVGNHQIEL----FDEIDYLREVL  389 (390)
T ss_dssp             HHHHHHHHEEEEECCSSCC----HHHHHHHHHHT
T ss_pred             HHHHHhcCEEEeeCCCCCC----HHHHHHHHHhh
Confidence                 01359999888777    99999999876

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.93  E-value=5.5e-25  Score=221.29  Aligned_cols=301  Identities=12%  Similarity=0.078  Sum_probs=196.4

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-HHHHHHHHHhcC--CCCEEEEecCCCCcccCCCccccccccccccc
Q 013217           64 IDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILK--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI  140 (447)
Q Consensus        64 ~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a~~~~~~al~~--pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~  140 (447)
                      ...+++.+++++++++|++++ +   +.+++|+ .+|.+++.++..  +|+.|++++++|.+..        +.+...|.
T Consensus       131 ~~~~~~~~~~~la~~~g~~~~-~---~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~--------~~~~~~G~  198 (456)
T 2z67_A          131 MYALTNKILESFFKQLGLNVH-A---IATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPI--------KAVSFVGM  198 (456)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCE-E---EEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH--------HHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHcCCCCC-E---EEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHH--------HHHHHcCC
Confidence            566777889999999999864 2   2335567 577766666543  7788998888877642        13344565


Q ss_pred             eeEEEecc-cCCCCCCCCHHHHHHHh-hh---hCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhc---cc
Q 013217          141 YFESMPYR-LDESTGLVDYDMLEKTA-IL---FRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHIS---GL  210 (447)
Q Consensus       141 ~~~~~~~~-~~~~~~~id~~~l~~~~-~~---~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~---g~  210 (447)
                      .+..++.. .+ +++.+|+++|++++ ++   .++.+|+++.++|++  ..|+++|.++|+++|+++++|+||+.   |.
T Consensus       199 ~~~~v~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~  277 (456)
T 2z67_A          199 NMRLVETVLDG-DRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYY  277 (456)
T ss_dssp             EEEEECCEEET-TEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHH
T ss_pred             CceEEEEeccC-CCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHh
Confidence            44433321 13 56789999999999 42   367777777665543  78999999999999999999987642   22


Q ss_pred             cccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChh
Q 013217          211 VAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPE  289 (447)
Q Consensus       211 ~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~  289 (447)
                      .+.+....+. ++|++++|+|||+.||.| |+++++++     ++.+.+.... .+.   .......++++++..+...+
T Consensus       278 ~~~~~~~~~~-~~D~~~~s~hK~~~~p~g~G~l~~~~~-----~~~~~l~~~~-~g~---~~~~~~~~~~aal~~l~~~~  347 (456)
T 2z67_A          278 LEKLKKAFKY-RVDAVVSSSDKNLLTPIGGGLVYSTDA-----EFIKEISLSY-PGR---ASATPVVNTLVSLLSMGSKN  347 (456)
T ss_dssp             HHHHHHHHTS-CCSEEEEEHHHHHCCCSSCEEEEESCH-----HHHHHHHTTS-CSC---BCSHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHhhCC-CCCEEEEcCCCCcCCCCCeEEEEEcCH-----HHHhhcCcCC-CCC---CCCCHHHHHHHHHHHHHHHH
Confidence            2221111111 489999999999888776 99999653     6666664432 222   11122344555666555567


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHC----CcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCe---EEccCC--CCCCC-
Q 013217          290 FKVYQNKVVSNCRALASRLVEL----GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASI---TLNKNS--VPGDK-  359 (447)
Q Consensus       290 ~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI---~v~~~~--~p~~~-  359 (447)
                      +++..++..++++++.+.|++.    |+.++.+ .  .++++++...+. ..++.+.|.+.||   .+....  .++.. 
T Consensus       348 ~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~-~--~~v~~~~~~~~~-~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~  423 (456)
T 2z67_A          348 YLELVKNQKNSKKLLDELLNDLSKKTGGKFLDV-E--SPIASCISVNSD-PVEIAAKLYNLRVTGPRGIKKTDHFGNCYL  423 (456)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCC-C--CSSEEEEECSSC-HHHHHHHHHHTTEESCEEECTTCHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccCCEecCC-C--CeEEEEEecccH-HHHHHHHHHHcCCCcceEEeecCccccccc
Confidence            7888999999999999999885    8766543 2  344555521121 3678888888876   332000  00000 


Q ss_pred             CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          360 SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       360 ~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      .....+.+|++++..++    ++|++++++.|++++
T Consensus       424 ~~~~~~~vr~s~~~~~t----~eeid~~l~~L~~~~  455 (456)
T 2z67_A          424 GTYTHDYIVMNAAIGVR----TEDIVNSVSKLEKIL  455 (456)
T ss_dssp             SCCSCCEEEEECCTTCC----HHHHHHHHHHHHTC-
T ss_pred             cccCcchhhhhhhcCCC----HHHHHHHHHHHHHHh
Confidence            01123589999887777    999999999987654

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.93  E-value=2e-24  Score=209.82  Aligned_cols=323  Identities=13%  Similarity=0.096  Sum_probs=210.3

Q ss_pred             cCeeEecCCC-CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHH
Q 013217           21 KSLELIASEN-FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN   99 (447)
Q Consensus        21 ~~i~l~~~~n-~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~   99 (447)
                      ..+.|..+.+ ..++.+++++.+.+.+ |..+.      +..    .+.+.+++++++++|.+++.+   +.+++|++|+
T Consensus        14 ~~i~l~~~~~~~~~~~v~~a~~~~~~~-~~~~~------g~~----~~~~~~~~~l~~~~g~~~~~v---~~~~g~t~a~   79 (359)
T 1svv_A           14 KPYSFVNDYSVGMHPKILDLMARDNMT-QHAGY------GQD----SHCAKAARLIGELLERPDADV---HFISGGTQTN   79 (359)
T ss_dssp             -CEECSCSCSSCCCHHHHHHHHHHTTC-CCCST------TCS----HHHHHHHHHHHHHHTCTTSEE---EEESCHHHHH
T ss_pred             eeEEecCCCcCCCCHHHHHHHHHHHhh-ccccc------ccc----HHHHHHHHHHHHHhCCCCccE---EEeCCchHHH
Confidence            3456644443 5689999999887753 32111      112    334455678999999876532   2345666999


Q ss_pred             HHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh------CCcEE
Q 013217          100 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF------RPKLI  173 (447)
Q Consensus       100 ~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~------~~kli  173 (447)
                      ..++.++++|||+|++.++.|.++....      .+...|.  +++.++.+  ++.+|+++|++++++.      ++++|
T Consensus        80 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~------~~~~~g~--~~~~v~~~--~~~~d~~~l~~~l~~~~~~~~~~~~~v  149 (359)
T 1svv_A           80 LIACSLALRPWEAVIATQLGHISTHETG------AIEATGH--KVVTAPCP--DGKLRVADIESALHENRSEHMVIPKLV  149 (359)
T ss_dssp             HHHHHHHCCTTEEEEEETTSHHHHSSTT------HHHHTTC--CEEEECCT--TSCCCHHHHHHHHHHSCSTTSCEEEEE
T ss_pred             HHHHHHHhCCCCEEEEcccchHHHHHHH------HHhcCCC--eeEEEeCC--CCeecHHHHHHHHHHHHhccCCCceEE
Confidence            9999999999999999999887764310      1233454  45555554  5789999999999873      28999


Q ss_pred             EEcCCCCCC-CCC---hHHHHHHHHHhCCEEEEehhh---hccccccccCCCCC---CcccEEEeCCCcccCCCCC-ceE
Q 013217          174 IAGASAYPR-DFD---YPRMRQIADAVGALLMMDMAH---ISGLVAASVVADPF---KYCDVVTTTTHKSLRGPRG-GMI  242 (447)
Q Consensus       174 i~~~~~~~~-~~~---~~~i~~ia~~~g~~livD~a~---~~g~~~~~~~~~~~---~~~Di~~~s~~K~l~Gp~g-G~i  242 (447)
                      +++++++++ ..+   +++|.++|+++|+++++|++|   ..|....+  ...+   ..+|++++|+||+ ++|.| |++
T Consensus       150 ~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~--~~~~~~~~~~d~~~~s~~K~-g~~~~~g~l  226 (359)
T 1svv_A          150 YISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVND--LTLADIARLTDMFYIGATKA-GGMFGEALI  226 (359)
T ss_dssp             EEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCC--CCHHHHHHHCSEEEEECTTT-TCSSCEEEE
T ss_pred             EEEcCCCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcc--hhhhhhhhcCCEEEEecccC-CCCCceEEE
Confidence            888664334 666   889999999999999999998   33332211  1110   1478999999997 66777 999


Q ss_pred             EeecCCcchhhHHHHhhhcc-CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCC
Q 013217          243 FFKKDPVLGVELESAINNAV-FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSD  321 (447)
Q Consensus       243 ~~~~~~~~~~~~~~~i~~~~-~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~  321 (447)
                      ++++      ++.+.+.... ..+...+......++++.+   +...++++..+++.++++++.+.|+..|+++..+ ..
T Consensus       227 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~  296 (359)
T 1svv_A          227 ILND------ALKPNARHLIKQRGALMAKGWLLGIQFEVL---MKDNLFFELGAHSNKMAAILKAGLEACGIRLAWP-SA  296 (359)
T ss_dssp             ECSG------GGCTTHHHHHHHTTCCCTTTHHHHHHHHHH---TSTTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSC-CS
T ss_pred             EEcc------cHHHHHHHHHhcCCcccccchhhHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHhccCCeEEccC-Cc
Confidence            9877      4444443321 0111111122222232222   3334567788899999999999995578877643 23


Q ss_pred             CeeEEecCCCCCCCHHHHHHHHhhc-CeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          322 NHLVLVDLRPMGIDGARVEKILDMA-SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       322 ~~~~~v~~~~~~~~~~~~~~~L~~~-gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      .+++|+++.      .++.+.|.+. ||.+-.. .+     ...+.+|++++..++    ++|++++++.|+++++
T Consensus       297 ~~~~~~~~~------~~~~~~l~~~~gi~v~~~-~~-----~~~~~iRi~~~~~~~----~~~i~~~~~~l~~~~~  356 (359)
T 1svv_A          297 SNQLFPILE------NTMIAELNNDFDMYTVEP-LK-----DGTCIMRLCTSWATE----EKECHRFVEVLKRLVA  356 (359)
T ss_dssp             SSEECBEEE------HHHHHHHTTTEECEEEEE-ET-----TTEEEEEEECCTTCC----HHHHHHHHHHHHHC--
T ss_pred             cceEEEEcC------HHHHHHHHHhcCEEEEec-cc-----CCCceEEEEccCcCC----HHHHHHHHHHHHHHHh
Confidence            455555542      4677777666 9998210 01     124579999876666    9999999999988765

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.92  E-value=7.5e-24  Score=212.30  Aligned_cols=357  Identities=11%  Similarity=-0.004  Sum_probs=214.0

Q ss_pred             hhcCe-eEecCCCCCCHHHHHHHhhhhhccCCC---CC--CC----CcccCchhHHHHHHHHHHHHHHHHcCC--CCCcc
Q 013217           19 QFKSL-ELIASENFTSRAVMEAVGSCLTNKYSE---GL--PG----KRYYGGNEYIDELETLCQKRALAAFNL--DENKW   86 (447)
Q Consensus        19 ~~~~i-~l~~~~n~~~~~v~~a~~~~~~~~~~~---g~--~~----~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~~   86 (447)
                      ....| +|-.+.+..++.+.+++...+...+..   |.  +.    .-.|+......++++...+++.+.+|.  ++++ 
T Consensus        30 ~~~~i~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~-  108 (444)
T 3if2_A           30 SDQPVNMLGGGNPAKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSEN-  108 (444)
T ss_dssp             SSSCCEECSCCCCCCCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGG-
T ss_pred             CchhhhccCCCCCCcccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHHH-
Confidence            35667 776666666666555554444321111   00  10    001222222345665555666666664  4443 


Q ss_pred             ceeeecCCcH-HHHHHHHHHhcCCCC--------------EEEEe-cCCCCcccCCCccccccccccccceeEEEecccC
Q 013217           87 GVNVQPLSGS-PANFEVYTAILKPHD--------------RIMGL-DLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD  150 (447)
Q Consensus        87 ~~~v~~~sGs-~a~~~~~~al~~pgd--------------~Vl~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  150 (447)
                         |.+|+|+ +|+..++.++++|||              +|+++ +|.|.++.......  .  .+.+....+++++++
T Consensus       109 ---i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~  181 (444)
T 3if2_A          109 ---IALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEG--Q--HFAAVLPHIDEVTHD  181 (444)
T ss_dssp             ---EEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSS--C--CEEECCCEEEEEEET
T ss_pred             ---EEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhccccc--c--hhhccCceEEecccc
Confidence               3335554 999999999999998              78875 77777764321000  0  122333466666665


Q ss_pred             CC----CCCCCHHHHHHH---hhhhCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCC
Q 013217          151 ES----TGLVDYDMLEKT---AILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVAD  218 (447)
Q Consensus       151 ~~----~~~id~~~l~~~---~~~~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~  218 (447)
                      ++    ++.+|+++|+++   +.+ ++++|+++.++||+  ..+   +++|.++|+++|+++|+|++|+.+.........
T Consensus       182 ~~~g~~~~~~d~~~l~~~l~~~~~-~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~  260 (444)
T 3if2_A          182 GEEGFFKYRVDFEALENLPALKEG-RIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDA  260 (444)
T ss_dssp             TEEEEEEEECCHHHHHTCHHHHTT-CEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCC
T ss_pred             cccCccccCCCHHHHHHHHHhcCC-CceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCcccccccccc
Confidence            32    247999999987   444 78999988777775  667   788999999999999999998532211111110


Q ss_pred             --CCCcccEEEeCCCccc-CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcCh-hHHH-H
Q 013217          219 --PFKYCDVVTTTTHKSL-RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSP-EFKV-Y  293 (447)
Q Consensus       219 --~~~~~Di~~~s~~K~l-~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~-~~~~-~  293 (447)
                        .....+++++|+||++ +|.|.|+++.++      ++.+.+.........++ +....+++...++..... ...+ .
T Consensus       261 ~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~------~l~~~~~~~~~~~~~~~-~~~~~~a~~~~l~~~~~~~~~~~~~  333 (444)
T 3if2_A          261 HLNWDNNTILCFSLSKIGLPGMRTGIIVADA------KVIEAVSAMNAVVNLAP-TRFGAAIATPLVANDRIKQLSDNEI  333 (444)
T ss_dssp             CCCCCTTEEEEEESTTTTCGGGCCEEEECCH------HHHHHHHHHHHHHHSSC-CCHHHHHHHHHHHTSHHHHHHHHTH
T ss_pred             cccCCCCEEEEechhhccCCCCceEEEEECH------HHHHHHHHHHHhccCCC-ChHHHHHHHHHHHcCchhHHHHHHH
Confidence              1124679999999974 466779999877      67666654322111122 222233333333321100 1112 3


Q ss_pred             HHHHHHHHHHHHHHHHH----CCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC--C---CCCC
Q 013217          294 QNKVVSNCRALASRLVE----LGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK--S---ALVP  364 (447)
Q Consensus       294 ~~~~~~~~~~l~~~L~~----~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~--~---~~~~  364 (447)
                      .+.+.++++.+.+.|.+    .++.+..+ ....++|+++...+++..++.+.|.++||.+..+..++..  .   +...
T Consensus       334 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~  412 (444)
T 3if2_A          334 KPFYQKQATLAVKLLKQALGDYPLMIHKP-EGAIFLWLWFKDLPISTLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAH  412 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSSSEEEECC-CBSSEEEEEETTCSSCHHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGG
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCceEecC-CccEEEEEEcCCCCCCHHHHHHHHHHCCeEEecchhhcCCCCCcccccCC
Confidence            44566677777777765    24555443 3456677887654567888999999999999764322111  0   1123


Q ss_pred             CeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          365 GGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       365 ~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      +.+|++++.  +    ++++++.++.|.+++...
T Consensus       413 ~~iRis~~~--~----~e~i~~~l~~l~~~~~~~  440 (444)
T 3if2_A          413 ECIRMSIAA--D----EQTLIDGIKVIGEVVREL  440 (444)
T ss_dssp             SEEEEESSS--C----HHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEeC--C----HHHHHHHHHHHHHHHHHH
Confidence            589999875  4    899999999999988754

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.92  E-value=2e-23  Score=212.57  Aligned_cols=308  Identities=12%  Similarity=0.073  Sum_probs=199.7

Q ss_pred             hHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCcHHHHHHHHHHhcC--------CC-----C-EEEEecCCCCcccC
Q 013217           62 EYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGSPANFEVYTAILK--------PH-----D-RIMGLDLPHGGHLS  125 (447)
Q Consensus        62 ~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sGs~a~~~~~~al~~--------pg-----d-~Vl~~~~~~~~~~~  125 (447)
                      +...++|+.+++++++++|++  .+.   .+.+++||+||..++.++..        +|     + +|+++.+.|.+...
T Consensus       128 ~~~~~le~~~~~~la~~~g~~~~~~~---~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~  204 (504)
T 2okj_A          128 PVFVLMEQITLKKMREIVGWSSKDGD---GIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKK  204 (504)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCSSSCE---EEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCCCCC---EEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHH
Confidence            556788988889999999998  432   23345667999988887742        57     6 78888777765421


Q ss_pred             CCcccccccccccccee-EEEecccCCCCCCCCHHHHHHHhhhh-----CCcEEEEcCCCCC-C-CCChHHHHHHHHHhC
Q 013217          126 HGFMTPKRRVSGTSIYF-ESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIAGASAYP-R-DFDYPRMRQIADAVG  197 (447)
Q Consensus       126 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~id~~~l~~~~~~~-----~~klii~~~~~~~-~-~~~~~~i~~ia~~~g  197 (447)
                              .+...|.+. +++.++++ +++.+|+++|++++++.     +|++|+++.++++ + ..|+++|+++|+++|
T Consensus       205 --------~~~~~g~g~~~v~~v~~~-~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g  275 (504)
T 2okj_A          205 --------AGAALGFGTDNVILIKCN-ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYN  275 (504)
T ss_dssp             --------HHHHTTSCGGGEEEECBC-TTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHT
T ss_pred             --------HHHHcCCCcccEEEEecC-CCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcC
Confidence                    223334322 34455565 46899999999999763     5888888865554 3 789999999999999


Q ss_pred             CEEEEehhhhccccccccCCCC---CCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhccCCCCC------
Q 013217          198 ALLMMDMAHISGLVAASVVADP---FKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGLQ------  267 (447)
Q Consensus       198 ~~livD~a~~~g~~~~~~~~~~---~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~~~~~~~------  267 (447)
                      +|+++|++|+.+..........   +.++|++++++|||+++|.+ |+++++++     ++.+.......+...      
T Consensus       276 ~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~-----~~~~~~~~~~~~~l~~~~~~~  350 (504)
T 2okj_A          276 LWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEK-----GILQGCNQMCAGYLFQPDKQY  350 (504)
T ss_dssp             CEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESST-----THHHHHHCCCCSSSCCSCCSS
T ss_pred             CEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECH-----HHHHHHhcCCCccccCCcccc
Confidence            9999999987766542211111   23689999999999988876 99999874     344332111111110      


Q ss_pred             ------------CCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEeeeC--CCCCeeEEecCCCC
Q 013217          268 ------------GGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSG--GSDNHLVLVDLRPM  332 (447)
Q Consensus       268 ------------g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~--~~~~~~~~v~~~~~  332 (447)
                                  ++-.. ...+++++++.+...+++++.++..++++++.+.|++ .|++++.+  ...+.+.+......
T Consensus       351 ~~~~~~~~~~~~~~rr~-~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~  429 (504)
T 2okj_A          351 DVSYDTGDKAIQCGRHV-DIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQS  429 (504)
T ss_dssp             CGGGCCGGGSSCSSCBC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECCGG
T ss_pred             cCcCCcccCCCCCCCCc-cHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCcc
Confidence                        00000 0122333444444467888899999999999999988 58988752  22233222221110


Q ss_pred             --CC------------CHHHHHHHHhhcCe-EEccCCCCCCCCCCCCCeEEEecC-ccccCCCCHHHHHHHHHHHHHHHH
Q 013217          333 --GI------------DGARVEKILDMASI-TLNKNSVPGDKSALVPGGIRIGSP-AMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       333 --~~------------~~~~~~~~L~~~gI-~v~~~~~p~~~~~~~~~~iRig~~-~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                        +.            ...++.+.|.+.|+ .+......+     ..+.+|+++. ..++    ++|++++.+.|++++.
T Consensus       430 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~-----~~~~lRis~~~~~~t----~edi~~~~~~l~~~~~  500 (504)
T 2okj_A          430 LRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGD-----KANFFRMVISNPAAT----QSDIDFLIEEIERLGQ  500 (504)
T ss_dssp             GSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETT-----EEEEEEECCCCTTCC----HHHHHHHHHHHHHHHT
T ss_pred             ccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECC-----ceEEEEEEeCCCCCC----HHHHHHHHHHHHHHHH
Confidence              10            02457777878885 443211110     1247999985 6777    9999999999987764

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.92  E-value=1e-23  Score=206.50  Aligned_cols=288  Identities=14%  Similarity=0.108  Sum_probs=194.5

Q ss_pred             HHHHHHc-CCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC
Q 013217           73 KRALAAF-NLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE  151 (447)
Q Consensus        73 ~~~~~~~-g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  151 (447)
                      +.+++++ +++++.+   +.+++|++|+..++.++++|||+|++.++.|.++..        .+...|.  +++.+++++
T Consensus        70 ~~la~~~~~~~~~~v---~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~  136 (375)
T 3op7_A           70 KSVSQLYTGVKPEQI---LQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYD--------IPKSLGA--EVDLWQIEE  136 (375)
T ss_dssp             HHHHTTSSSCCGGGE---EEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHH--------HHHHTTC--EEEEEEEEG
T ss_pred             HHHHHHhccCChhhE---EEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHH--------HHHHcCC--EEEEEeccc
Confidence            4677776 4555432   223455699999999999999999999998876532        2334454  444555542


Q ss_pred             -CCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC--Ccc
Q 013217          152 -STGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF--KYC  223 (447)
Q Consensus       152 -~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~--~~~  223 (447)
                       +++.+|+++|++++++ ++++|+++.++||+  ..+   +++|.++|++||+++|+|++|..+ ...+. +...  ...
T Consensus       137 ~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~-~~~~~-~~~~~~~~~  213 (375)
T 3op7_A          137 ENGWLPDLEKLRQLIRP-TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSF-SELDV-PSIIEVYDK  213 (375)
T ss_dssp             GGTTEECHHHHHHHCCT-TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCC-SSSCC-CCHHHHCTT
T ss_pred             cCCCCCCHHHHHHhhcc-CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccCC-CchhhhcCC
Confidence             3567899999999987 89999998777775  678   899999999999999999997532 22211 1100  124


Q ss_pred             cEEEeCCCcccC--CCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHH
Q 013217          224 DVVTTTTHKSLR--GPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNC  301 (447)
Q Consensus       224 Di~~~s~~K~l~--Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~  301 (447)
                      +++++|++|+++  |.|+|++++++      ++.+.+.........+ ++....++...+++... ...++..+++.+++
T Consensus       214 ~i~~~s~sK~~~~~G~r~G~v~~~~------~l~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~  285 (375)
T 3op7_A          214 GIAVNSLSKTYSLPGIRIGWVAANH------QVTDILRDYRDYTMIC-AGVFDDLVAQLALAHYQ-EILERNRHILEENL  285 (375)
T ss_dssp             EEEEEESSSSSSCGGGCCEEEECCH------HHHHHHTTTGGGTTSC-CCHHHHHHHHHHHHTHH-HHHHHHHHHHHHHH
T ss_pred             EEEEeEChhhcCCcccceEEEEeCH------HHHHHHHHHHhhhccC-CCcHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence            588999999984  66779999976      7877776543333222 33333334444555322 23456667778889


Q ss_pred             HHHHHHHHH-CCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCC
Q 013217          302 RALASRLVE-LGYKLVSGGSDNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGF  379 (447)
Q Consensus       302 ~~l~~~L~~-~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~  379 (447)
                      +.+.+.|++ .++.+..+ ...+..++.+.. +.+..++.+.| +++||.+..+..++     .++.+|+++..  .   
T Consensus       286 ~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~~g~~~~-----~~~~iRi~~~~--~---  353 (375)
T 3op7_A          286 AILDQWIEEEPLVSYIRP-AVVSTSFVKIAV-DMPMEDFCLQLLQEHGVLLVPGNRFE-----RDGYVRLGFAC--E---  353 (375)
T ss_dssp             HHHHHHHHHCTTEEECCC-SSSSCEEEEECC-SSCHHHHHHHHHHHHCEECEEGGGGT-----CTTEEEECCCS--C---
T ss_pred             HHHHHHHhhCCCceEecC-CCeEEEeEEcCC-CCCHHHHHHHHHHhCCEEEeChhhhC-----CCCeEEEEecC--C---
Confidence            999999988 47776543 234445665543 34666666655 78999986543222     14689998642  2   


Q ss_pred             CHHHHHHHHHHHHHHHHH
Q 013217          380 SEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       380 ~~~di~~l~~~i~~~l~~  397 (447)
                       ++++++.++.|.++++.
T Consensus       354 -~~~i~~~l~~l~~~l~~  370 (375)
T 3op7_A          354 -QETLIKGLEKLSQFLRR  370 (375)
T ss_dssp             -HHHHHHHHHHHHHHHGG
T ss_pred             -HHHHHHHHHHHHHHHHH
Confidence             68899999999888764

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.92  E-value=5.7e-24  Score=208.34  Aligned_cols=333  Identities=17%  Similarity=0.096  Sum_probs=203.6

Q ss_pred             HHHHHHHHHHHhh--cCeeEecC--CCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCC
Q 013217            8 VCEIITKEKERQF--KSLELIAS--ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE   83 (447)
Q Consensus         8 ~~~~~~~e~~~~~--~~i~l~~~--~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~   83 (447)
                      .+..|....+...  .-+++...  ...+++.|++++.     .|          ++.   ..+++..++.+++++|+++
T Consensus        14 ~~~~~~~~i~~~g~~~v~~~~~~~~~~~~~~~v~~a~~-----~~----------~~~---~~~~~~~~~~~a~~~g~~~   75 (374)
T 2aeu_A           14 ARKIILEILNEKGRDALYDLSGLSGGFLIDEKDKALLN-----TY----------IGS---SYFAEKVNEYGLKHLGGDE   75 (374)
T ss_dssp             HHHHHHHHHHHTCGGGCEECSSCCCCCCCCHHHHHHHT-----ST----------THH---HHHHHHHHHHHHHHHTCCT
T ss_pred             HHHHHHHHHhccCccceeeecccCCCCCCCHHHHHHHH-----Hh----------cCc---hHHHHHHHHHHHHHhCCCC
Confidence            4455555544332  34565543  4567999999985     11          111   2334445567788899842


Q ss_pred             CccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHH
Q 013217           84 NKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEK  163 (447)
Q Consensus        84 ~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~  163 (447)
                      .+.  .+.+++|++|+..++.++  |||+|++.++.|++|++..     ..+...|.  +++.+        .|++++++
T Consensus        76 ~~~--~~~~~ggt~a~~~~~~~~--~gd~Vl~~~~~y~~~~~~~-----~~~~~~g~--~~~~v--------~d~~~l~~  136 (374)
T 2aeu_A           76 NDK--CVGFNRTSSAILATILAL--KPKKVIHYLPELPGHPSIE-----RSCKIVNA--KYFES--------DKVGEILN  136 (374)
T ss_dssp             TEE--EEEESSHHHHHHHHHHHH--CCSEEEEECSSSSCCTHHH-----HHHHHTTC--EEEEE--------SCHHHHHT
T ss_pred             cce--EEEEcChHHHHHHHHHhC--CCCEEEEecCCCCccHHHH-----HHHHHcCc--EEEEe--------CCHHHHHh
Confidence            111  244577789999999988  9999999999888765311     01223443  44443        38899988


Q ss_pred             HhhhhCCcE-EEEcCCCCCC---CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-cccEEEeCCCcccCCCC
Q 013217          164 TAILFRPKL-IIAGASAYPR---DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGPR  238 (447)
Q Consensus       164 ~~~~~~~kl-ii~~~~~~~~---~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-~~Di~~~s~~K~l~Gp~  238 (447)
                      + ++ +|++ |++++++||+   ..++++|.++|+++|+++++|++|..+........++.. +.|++++|+||+++||+
T Consensus       137 ~-~~-~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g~~  214 (374)
T 2aeu_A          137 K-ID-KDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPR  214 (374)
T ss_dssp             T-CC-TTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSCS
T ss_pred             c-CC-CccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccCcc
Confidence            7 54 8999 8888777764   467899999999999999999998665310111111222 47999999999999999


Q ss_pred             CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHH----HHHHHH----
Q 013217          239 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL----ASRLVE----  310 (447)
Q Consensus       239 gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l----~~~L~~----  310 (447)
                      +|++++++      ++.+.+....... .++++....++...+++... .   +..+++.++++.+    .+.|.+    
T Consensus       215 ~G~~~~~~------~~~~~l~~~~~~~-~~~~~~~~~~a~~~al~~~~-~---~~~~~~~~~~~~~~~~~~~~l~~~L~~  283 (374)
T 2aeu_A          215 GGLLAGKK------ELVDKIYIEGTKF-GLEAQPPLLAGIYRALKNFN-L---ERIRKAFERAKNFDLSKIEKLNKELKA  283 (374)
T ss_dssp             CEEEEEEH------HHHHHHHHHHHTT-TCBCCHHHHHHHHHHHHHCC-H---HHHHHHHHHHHHCCCHHHHHHHHHHTT
T ss_pred             eEEEEECH------HHHHHHHHhhccc-cCCCCHHHHHHHHHHHHHHh-H---HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            99999988      6777766533221 23455555556666776542 1   2344455555554    344433    


Q ss_pred             ----CCcEeeeCCCCCeeEEecCCCCCCC---HH-HHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHH
Q 013217          311 ----LGYKLVSGGSDNHLVLVDLRPMGID---GA-RVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEK  382 (447)
Q Consensus       311 ----~g~~~~~~~~~~~~~~v~~~~~~~~---~~-~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~  382 (447)
                          .|+.+...+...++.+.+... ..+   .. .+.+.|+++||.+..+    ...+...+.+||++.....   .+.
T Consensus       284 ~~~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~ll~~~gV~v~~g----~~~~~~~~~lRi~~~~~~~---~~~  355 (374)
T 2aeu_A          284 IDDNINIVYERTPTGFVIKRVYKDD-TINIKKLIEIGFNLLKNYGIITITV----AGMPGASKSLRIDLTSRDA---ERI  355 (374)
T ss_dssp             TCTTEEEEEEECSSEEEEEEEESSH-HHHHHHHHHHHHHHHHHHCEECSTT----SSSCSSCCSEEEETTSGGG---GGS
T ss_pred             hhhccCcceeeCCceEEEEeecccc-cccccchHHHHHHHHHhCCEEEecC----CCCCCCCCeEEEEcCCchH---HHH
Confidence                245543332222333333321 000   01 2345667899999643    2112234579999754222   244


Q ss_pred             HHHHHHHHHHHHHHHH
Q 013217          383 EFVAIADFIHEGVEIT  398 (447)
Q Consensus       383 di~~l~~~i~~~l~~~  398 (447)
                      ++++++++|+++++..
T Consensus       356 ~l~~l~~~l~~~l~~~  371 (374)
T 2aeu_A          356 DDNYIIKAIVESIKMA  371 (374)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5899999998887753

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.92  E-value=2.3e-24  Score=212.57  Aligned_cols=309  Identities=17%  Similarity=0.151  Sum_probs=203.0

Q ss_pred             HHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccCC-CCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCC
Q 013217            6 PEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYS-EGLPGKRYYGGNEYIDELETLCQKRALAAFNLDEN   84 (447)
Q Consensus         6 ~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~-~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~   84 (447)
                      .++++.+.++.+++...++.+++.|  ...|+++|......... .+..+.. | +....+.+|    +.+++++|.+. 
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~n--~~~vl~a~~~~~~~~~~~~~~~~~~-y-~~~~~~~Le----~~lA~l~g~e~-   76 (409)
T 3jzl_A            6 QAIRKKVETQIDDLQNKTDEIAEFN--QAKVLDAFQENKVSDFHFHPSTGYG-Y-DDEGRDTLE----RVYATVFKTEA-   76 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHTTCCGGGGCCCCTTC-T-TCHHHHHHH----HHHHHHHTCSE-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHhhhhhhccCCCcCCC-C-ChhHHHHHH----HHHHHHhCCCc-
Confidence            4677777788888888888888888  47888888775432111 1111111 2 222355666    57899999876 


Q ss_pred             ccceeee--cCCcHHHHHHHHHHhcCCCCEEEEec-CCCCcccCCCc-cc-cccccccccceeEEEecccCCCCCCCCHH
Q 013217           85 KWGVNVQ--PLSGSPANFEVYTAILKPHDRIMGLD-LPHGGHLSHGF-MT-PKRRVSGTSIYFESMPYRLDESTGLVDYD  159 (447)
Q Consensus        85 ~~~~~v~--~~sGs~a~~~~~~al~~pgd~Vl~~~-~~~~~~~~~~~-~~-~~~~~~~~g~~~~~~~~~~~~~~~~id~~  159 (447)
                         ..+.  ++||++|+..++.++++|||+|++.+ +.|++.....- .. ....+...|.  +++.++++ +++.+|++
T Consensus        77 ---alv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~--~~~~v~~~-~~g~~d~e  150 (409)
T 3jzl_A           77 ---ALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHI--GYSSVPLL-ENGDVDFP  150 (409)
T ss_dssp             ---EEEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTC--EEEECCCC-TTSCCCHH
T ss_pred             ---EEEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCC--EEEEeCCC-CCCCcCHH
Confidence               3443  68999999999999999999999998 77766431000 00 0001223343  55666665 45789999


Q ss_pred             HHHHHhhhhCCcEEEEcC----CCCCC--CCChHHHHHHHHH--hCCEEEEehhhhccccccccCCCCCC-cccEEEeCC
Q 013217          160 MLEKTAILFRPKLIIAGA----SAYPR--DFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTT  230 (447)
Q Consensus       160 ~l~~~~~~~~~klii~~~----~~~~~--~~~~~~i~~ia~~--~g~~livD~a~~~g~~~~~~~~~~~~-~~Di~~~s~  230 (447)
                      ++++++++ +|++|+++.    +++++  ..|+++|.++|++  +|+++++|++|+.+...    ..|.. ++|++++|+
T Consensus       151 ~l~~ai~~-~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~~~~~----~~p~~~g~Div~~S~  225 (409)
T 3jzl_A          151 RIAKKMTP-KTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEY----QEPPEVGADIIAGSL  225 (409)
T ss_dssp             HHHHHCCT-TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTTSS----CCSGGGTCSEEEEET
T ss_pred             HHHHhccC-CCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCccccccc----CCccccCCeEEEECc
Confidence            99999987 899999986    66665  5689999999999  99999999998655321    12333 589999999


Q ss_pred             CcccCC---CCCceEEeecCCcchhhHHHHhhhcc-CCCC--CCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHH
Q 013217          231 HKSLRG---PRGGMIFFKKDPVLGVELESAINNAV-FPGL--QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL  304 (447)
Q Consensus       231 ~K~l~G---p~gG~i~~~~~~~~~~~~~~~i~~~~-~~~~--~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l  304 (447)
                      ||+++|   +.||++++++      ++.+++.... .++.  ..++......++..+++     ....++++..+++..+
T Consensus       226 sK~lgg~~~~~GG~v~~~~------~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl~-----~~~~r~~~~~~~a~~l  294 (409)
T 3jzl_A          226 IKNPGGGLAKTGGYIAGKE------ALVDLCGYRLTTPGIGREAGASLYSLLEMYQGFF-----LAPHVTAQAIKGARFT  294 (409)
T ss_dssp             TSGGGTTTCSSCEEEEECH------HHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred             cccCCccCCceEEEEEeCH------HHHHHHHHHhccccccccccccHHHHHHHHHHHh-----hHHHHHHHHHHHHHHH
Confidence            999976   5689999987      7777776532 2322  12222211112222222     2356788899999999


Q ss_pred             HHHHHHCCcEeeeCCCCCe-----eEEecCCCCCCCHHHHHHHHhhcCe
Q 013217          305 ASRLVELGYKLVSGGSDNH-----LVLVDLRPMGIDGARVEKILDMASI  348 (447)
Q Consensus       305 ~~~L~~~g~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~L~~~gI  348 (447)
                      ++.|++.|+++.++  .++     +..+.+.. ......+.+.|+....
T Consensus       295 a~~L~~~g~~v~p~--~~~~~~~~i~~i~l~~-~~~~~~~~~~L~~~~~  340 (409)
T 3jzl_A          295 AAMLAEFGVEADPV--WDAPRTDLIQSVSFHN-KEKMVAFAQAIQAASP  340 (409)
T ss_dssp             HHHHHHTTCEEESC--TTSCCSSSCCEEECSC-HHHHHHHHHHHHHTSS
T ss_pred             HHHHHhCCCcccCC--CCCCCccEEEEEEeCC-HHHHHHHHHHHHhcCc
Confidence            99999999988543  222     33444431 1122345666666543

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.92  E-value=1e-23  Score=209.65  Aligned_cols=331  Identities=12%  Similarity=0.143  Sum_probs=210.0

Q ss_pred             cCeeEecCC-------CCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecC
Q 013217           21 KSLELIASE-------NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPL   93 (447)
Q Consensus        21 ~~i~l~~~~-------n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~   93 (447)
                      +.|+|..++       ..+++.+.+++....... ..+|+..   .|   ..++++...+++....+.+..   ..|.++
T Consensus        39 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~---~g---~~~lr~~ia~~~~~~~~~~~~---~~i~~t  108 (418)
T 3rq1_A           39 NVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSE-HVGYAPI---AG---IPDFLCAAEKECFGNFRPEGH---IRSIAT  108 (418)
T ss_dssp             GCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHH-HHSCCCT---TC---CHHHHHHHHHHHHGGGCCSSE---EEEEEE
T ss_pred             CeEECCCCcccCCCCCccccHHHHHHHHHhcccc-cCCCCCC---CC---hHHHHHHHHHHHhcccCcccc---ccEEEC
Confidence            568887663       246889999987654321 1133221   11   234544444556555554421   134446


Q ss_pred             CcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh---C
Q 013217           94 SGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF---R  169 (447)
Q Consensus        94 sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~---~  169 (447)
                      +|+ +|+..++.++++|||+|++.+|.|.++..        .+...|.  +++.++++++++.+|++++++++++.   +
T Consensus       109 ~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~  178 (418)
T 3rq1_A          109 AGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRV--------ICSDTGR--TLVTYSLFDEHNNFNHEAFQNRVNELAAKQ  178 (418)
T ss_dssp             SHHHHHHHHHHHHHSCTTCEEEEESSCCTHHHH--------HHHHTTC--EEEEECSBCTTSSBCHHHHHHHHHHHHHHC
T ss_pred             CchHHHHHHHHHHhcCCCCEEEECCCCchhHHH--------HHHHcCC--EEEEEeeeCCCCCcCHHHHHHHHHHhhccC
Confidence            655 89999999999999999999998876532        2334554  55666665455789999999998753   6


Q ss_pred             Cc-EEEEcCC-CCCC--CCChH---HHHHHHH------HhCCEEEEehhhhccccccccCCCC----CCc--cc---EEE
Q 013217          170 PK-LIIAGAS-AYPR--DFDYP---RMRQIAD------AVGALLMMDMAHISGLVAASVVADP----FKY--CD---VVT  227 (447)
Q Consensus       170 ~k-lii~~~~-~~~~--~~~~~---~i~~ia~------~~g~~livD~a~~~g~~~~~~~~~~----~~~--~D---i~~  227 (447)
                      ++ +|+++++ +||+  ..+.+   +|+++|+      ++|+++|+|++| .++...+....+    .+.  .|   +++
T Consensus       179 ~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  257 (418)
T 3rq1_A          179 TNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAY-LDYSGEKDEVRAFFNKFSHLPKEILTCVC  257 (418)
T ss_dssp             SEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTT-GGGSSCHHHHHGGGGGGTTCCTTEEEEEE
T ss_pred             CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccc-ccccCChHHHHHHHHHHHhcCCCceEEEE
Confidence            76 7777767 7775  66655   5555566      889999999997 444433210000    011  12   778


Q ss_pred             eCCCccc--CCCCCceEEe---ecCCcchhhHHHHhhhccCC---CCCCCCcHHHHHHHHHHHHHhc-----ChhHHHHH
Q 013217          228 TTTHKSL--RGPRGGMIFF---KKDPVLGVELESAINNAVFP---GLQGGPHNHTIGGLAVCLKHAQ-----SPEFKVYQ  294 (447)
Q Consensus       228 ~s~~K~l--~Gp~gG~i~~---~~~~~~~~~~~~~i~~~~~~---~~~g~p~~~~~aal~~al~~~~-----~~~~~~~~  294 (447)
                      +|+||++  +|.|.|++++   ++      ++.+.+......   +..++++....+++..+++...     ....+++.
T Consensus       258 ~S~sK~~~~~G~r~G~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  331 (418)
T 3rq1_A          258 YSLSKGFTMYGQRVGAMIGISDDE------EIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYY  331 (418)
T ss_dssp             EESTTTTTCCSSCCEEEEEEESSH------HHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             EeCCCCCcCcCCcceEEEEEeCCH------HHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            9999986  4777899988   55      666665542110   0112334444444443442210     01123455


Q ss_pred             HHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCcc
Q 013217          295 NKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAM  374 (447)
Q Consensus       295 ~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~  374 (447)
                      +++.++++.+.+.|.+.|+++..+ ..+.+.|+++.    +..++.+.|.++||.+..    +      ++++|+++. .
T Consensus       332 ~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~~~~~~----~~~~~~~~l~~~gi~v~~----g------~~~iRis~~-~  395 (418)
T 3rq1_A          332 QLIRDRADIFKQEAAQVGLPMLPY-RGGFFITIPTD----SANAICEELKKEHIYVIA----L------ANGIRIAAC-G  395 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCCC-CSSSEEEEECT----THHHHHHHHHHTTEECEE----C------SSEEEEEGG-G
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCC-CceEEEEcCCC----CHHHHHHHHHhCCEEEec----C------CCCeEEEEe-c
Confidence            677888888899998888877654 34555666653    567888899999999853    2      357999954 2


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          375 TTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       375 ~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      .+    +++++++++.|+++++..
T Consensus       396 ~~----~~~i~~~~~~l~~~l~~~  415 (418)
T 3rq1_A          396 IP----KCQMTGLAEKIYNAMKSL  415 (418)
T ss_dssp             SC----HHHHTTHHHHHHHHHHHT
T ss_pred             CC----HHHHHHHHHHHHHHHHHH
Confidence            24    899999999999988643

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.92  E-value=7.1e-23  Score=199.30  Aligned_cols=316  Identities=15%  Similarity=0.113  Sum_probs=214.4

Q ss_pred             hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCc-H
Q 013217           20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-S   96 (447)
Q Consensus        20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sG-s   96 (447)
                      +..|+|..++|+  +++.+.+++...+.+.  .+||..       ...+++    ++++++++++++.    |.+++| +
T Consensus        26 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~~--~~y~~~-------~~~~l~----~~la~~~~~~~~~----i~~~~g~t   88 (361)
T 3ftb_A           26 RELLDYSSNINPLGIPKSFLNNIDEGIKNL--GVYPDV-------NYRRLN----KSIENYLKLKDIG----IVLGNGAS   88 (361)
T ss_dssp             --CEETTCCCCTTCSCHHHHTTHHHHHHGG--GSCCCT-------TCHHHH----HHHHHHHTCCSCE----EEEESSHH
T ss_pred             CCEEEecCCCCCCCCCHHHHHHHHHHHHHh--cCCCCc-------cHHHHH----HHHHHHhCCCcce----EEEcCCHH
Confidence            457888888775  4789999988877652  244332       123443    6788888987753    333555 5


Q ss_pred             HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 013217           97 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG  176 (447)
Q Consensus        97 ~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~  176 (447)
                      +|+..++.++    |+|++..+.|.++..        .+...|.  +++.++++ ..+.+|++++++++++  +++|+++
T Consensus        89 ~al~~~~~~~----d~vi~~~~~~~~~~~--------~~~~~g~--~~~~~~~~-~~~~~~~~~l~~~l~~--~~~v~i~  151 (361)
T 3ftb_A           89 EIIELSISLF----EKILIIVPSYAEYEI--------NAKKHGV--SVVFSYLD-ENMCIDYEDIISKIDD--VDSVIIG  151 (361)
T ss_dssp             HHHHHHHTTC----SEEEEEESCCTHHHH--------HHHHTTC--EEEEEECC-TTSCCCHHHHHHHTTT--CSEEEEE
T ss_pred             HHHHHHHHHc----CcEEEecCChHHHHH--------HHHHcCC--eEEEeecC-cccCCCHHHHHHhccC--CCEEEEe
Confidence            8988888777    999999988876531        2334454  55555565 3456888999999976  8999998


Q ss_pred             CCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-----cccEEEeCCCccc--CCCCCceEE-
Q 013217          177 ASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-----YCDVVTTTTHKSL--RGPRGGMIF-  243 (447)
Q Consensus       177 ~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-----~~Di~~~s~~K~l--~Gp~gG~i~-  243 (447)
                      .++||+  ..+   +++|.++|+++|+++++|++|..+ .... ......     ...++++|+||++  +|.|.|+++ 
T Consensus       152 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~-~~~~-~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~  229 (361)
T 3ftb_A          152 NPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEF-TGDP-SSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGIT  229 (361)
T ss_dssp             TTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGG-TCCT-TSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEE
T ss_pred             CCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhh-cCCc-ccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEe
Confidence            788775  444   677888888999999999998533 2211 111111     2347889999987  456679988 


Q ss_pred             eecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcE-eeeCCCC
Q 013217          244 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYK-LVSGGSD  321 (447)
Q Consensus       244 ~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~~  321 (447)
                      .++      ++.+.+.....+   .+++....+++..+++.  ....++..+++.++++.+.+.|++. ++. +..+  .
T Consensus       230 ~~~------~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--~  296 (361)
T 3ftb_A          230 NNK------EIAAKIKAKQNP---WNINCFAEMAAINCLKD--TNYIEESLLWIKKERKRFIEELNKIGFIKRVFSP--H  296 (361)
T ss_dssp             SCH------HHHHHHHTTSCT---TCSCHHHHHHHHHTSSC--HHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECC--S
T ss_pred             CCH------HHHHHHHhhCCC---CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCCceecCC--C
Confidence            555      777777654332   24566555555555542  2345777888899999999999885 777 5543  2


Q ss_pred             CeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          322 NHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       322 ~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      ..++++.+..  .+..++.+.|.++||.++.+...+   +..++.+|++++   +    ++|++++.++|+++.+
T Consensus       297 ~~~~~~~~~~--~~~~~l~~~l~~~gi~v~~g~~~~---~~~~~~iRis~~---~----~~~~~~l~~~l~~~~~  359 (361)
T 3ftb_A          297 ANFVLCRLEN--ISGEKLYDSLLKEDIVIRRCCNFI---GLDDSFVRFAIK---D----EKKNTKFLRALKGVEN  359 (361)
T ss_dssp             SSEEEEEESS--SCHHHHHHHHHTTTEECEECTTST---TCCTTEEEEECC---C----HHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEcCC--CCHHHHHHHHHHCCeEEeeCccCC---CCCCCEEEEEcC---C----HHHHHHHHHHHHHHHh
Confidence            3456677653  467888898988899996542221   223568999965   3    8899999999887654

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.92  E-value=1.5e-24  Score=211.13  Aligned_cols=332  Identities=11%  Similarity=0.058  Sum_probs=207.7

Q ss_pred             HHhhcCeeEecCCCCC--CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCC
Q 013217           17 ERQFKSLELIASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLS   94 (447)
Q Consensus        17 ~~~~~~i~l~~~~n~~--~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~s   94 (447)
                      .++...+.+..++|+.  +|.|++++.+.+..         ..|+..+...+++    +++++++|.+..     +.+++
T Consensus        10 ~~~~~~~~~~~~~~~~g~~p~v~~ai~~~~~~---------~~~~~~~~~~~l~----~~la~~~~~~~~-----i~~~~   71 (359)
T 3pj0_A           10 YQKTPYKLGGNGPRNVGVLTEALQNIDDNLES---------DIYGNGAVIEDFE----TKIAKILGKQSA-----VFFPS   71 (359)
T ss_dssp             HHTCSEESSSSSCCBHHHHHHHTTTSCTTCBC---------CBTTBSHHHHHHH----HHHHHHHTCSEE-----EEESC
T ss_pred             HHhcchhhcCCCccccCCCHHHHHHHHhhccc---------CcccCCHHHHHHH----HHHHHHhCCCcE-----EEeCC
Confidence            4556677888899987  78899988763322         1123334445555    688899998752     34488


Q ss_pred             cHHHHHHHHHHhcCCCCE--EEEecCCCCcccCCCcccccccc-ccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCc
Q 013217           95 GSPANFEVYTAILKPHDR--IMGLDLPHGGHLSHGFMTPKRRV-SGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPK  171 (447)
Q Consensus        95 Gs~a~~~~~~al~~pgd~--Vl~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~k  171 (447)
                      |++|+..++.+++++||+  |++..+.|.......      .+ ...|  .++++++.  +++.+|+++++++ .+ +++
T Consensus        72 g~~a~~~a~~~~~~~g~~~vvi~~~~~~~~~~~~~------~~~~~~g--~~~~~v~~--~~~~~d~~~l~~~-~~-~~~  139 (359)
T 3pj0_A           72 GTMAQQIALRIWADRKENRRVAYHPLSHLEIHEQD------GLKELQQ--ITPLLLGT--ANQLLTIDDIKSL-RE-PVS  139 (359)
T ss_dssp             HHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTT------HHHHHHC--CEEEECSC--TTSCCCHHHHHTC-SS-CCS
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEeccceeeehhcc------hHHHhcC--ceEEecCC--cCCCcCHHHHHhc-cC-Cce
Confidence            999999999999999987  444433332221100      11 2234  35556554  4578999999988 44 899


Q ss_pred             EEEEcCCCCC--C-CCChH---HHHHHHHHhCCEEEEehhhhccccc-cccCCCCC-CcccEEEeCCCcccCCCCCceEE
Q 013217          172 LIIAGASAYP--R-DFDYP---RMRQIADAVGALLMMDMAHISGLVA-ASVVADPF-KYCDVVTTTTHKSLRGPRGGMIF  243 (447)
Q Consensus       172 lii~~~~~~~--~-~~~~~---~i~~ia~~~g~~livD~a~~~g~~~-~~~~~~~~-~~~Di~~~s~~K~l~Gp~gG~i~  243 (447)
                      +|++++++|+  + ..+.+   +|.++|++||+++++|++|..+... .+....++ .++|+++.|+||++++|.||+++
T Consensus       140 ~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~gg~~~  219 (359)
T 3pj0_A          140 SVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVSFYKGIGGIAGAILA  219 (359)
T ss_dssp             EEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSEEEEESSSTTCCSSCEEEE
T ss_pred             EEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCEEEEeccccCCCcceEEEE
Confidence            9999866544  2 55655   5599999999999999987544321 11111111 24789999999999888777777


Q ss_pred             eecCCcchhhHHHHhhhc--cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCC
Q 013217          244 FKKDPVLGVELESAINNA--VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGS  320 (447)
Q Consensus       244 ~~~~~~~~~~~~~~i~~~--~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~  320 (447)
                      .++      ++.+.+...  .+.+...+.+....+++ .+++...     +..++..++++++.+.|++. |+++...+.
T Consensus       220 ~~~------~l~~~~~~~~~~~~~~~~~~~~~~~a~~-~~l~~~~-----~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~  287 (359)
T 3pj0_A          220 GND------DFVQEAKIWKRRYGGDLISLYPYILSAD-YYFEKRI-----GKMAEYFEAAKGLAERFNSCSGVKTVPEVP  287 (359)
T ss_dssp             ECH------HHHHHHHHHHHHTTCCCSCCHHHHHHHH-HHHHHHG-----GGHHHHHHHHHHHHHHHHTSTTEEEESSSC
T ss_pred             CCH------HHHHHHHHHHHHhCCCcchhHHHHHHHH-HHHHHHH-----HHhHHHHHHHHHHHHHHhhCCCceeeccCC
Confidence            777      677766542  12211112222222222 3444322     34556788889999999985 888753223


Q ss_pred             CCeeEEecCCCCC-CCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          321 DNHLVLVDLRPMG-IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       321 ~~~~~~v~~~~~~-~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                      ..+++|+++...+ .+..++.+.|.++||.++.+..++.   ...+.+|++...... ..+.+++++..+.|.++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~g~~~~~---~~~~~~r~~i~~~~~-~~~~e~l~~~l~~l~~~  358 (359)
T 3pj0_A          288 VSNMFHVYFENSADEIGAILTKIQDETGVGISGYLQEKS---ADVCAFEVSVGDAFA-EIPAKNLELVFRCLEKE  358 (359)
T ss_dssp             SSSEEEEEESSCHHHHHHHHHHHHHHHCEECCSCCEEEE---TTEEEEEEECCTTGG-GSCHHHHHHHHHHHHHH
T ss_pred             cceEEEEEecCccchhHHHHHHHHHhcCcEecCCccccC---CCceEEEEEecCccc-cCCHHHHHHHHHHHHhc
Confidence            4566777765321 2356788899999999975432221   113468886542211 13477777777777654

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.92  E-value=2.3e-23  Score=212.62  Aligned_cols=308  Identities=13%  Similarity=0.033  Sum_probs=198.3

Q ss_pred             hHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc-------C-CCC------EEEEecCCCCcccCCC
Q 013217           62 EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL-------K-PHD------RIMGLDLPHGGHLSHG  127 (447)
Q Consensus        62 ~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~-------~-pgd------~Vl~~~~~~~~~~~~~  127 (447)
                      +...++|..+++++++++|++.+.   .+.+++||+||..++.++.       + +||      +|++....|.+...  
T Consensus       144 ~~~~~le~~~~~~la~l~g~~~~~---~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~--  218 (515)
T 2jis_A          144 PVFVLMEEEVLRKLRALVGWSSGD---GIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQK--  218 (515)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSCE---EEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHH--
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCCC---eEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHH--
Confidence            456678888899999999998532   2334566789988887763       2 676      78888877766531  


Q ss_pred             cccccccccccccee-EEEecccCCCCCCCCHHHHHHHhhhh-----CCcEEEEcCCCCC-C-CCChHHHHHHHHHhCCE
Q 013217          128 FMTPKRRVSGTSIYF-ESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIAGASAYP-R-DFDYPRMRQIADAVGAL  199 (447)
Q Consensus       128 ~~~~~~~~~~~g~~~-~~~~~~~~~~~~~id~~~l~~~~~~~-----~~klii~~~~~~~-~-~~~~~~i~~ia~~~g~~  199 (447)
                            .+...|.+. +++.++++ +++.+|+++|++++++.     +|++|+++.++++ + ..|+++|+++|+++|++
T Consensus       219 ------~~~~~g~g~~~v~~v~~~-~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~  291 (515)
T 2jis_A          219 ------GAAFLGLGTDSVRVVKAD-ERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLW  291 (515)
T ss_dssp             ------HHHHTTSCGGGEEEECBC-TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCE
T ss_pred             ------HHHHcCCCCCcEEEEecC-CCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCe
Confidence                  223344322 34455565 46889999999999763     4888888865444 3 78999999999999999


Q ss_pred             EEEehhhhccccccccCCCC---CCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhccCCCC---------
Q 013217          200 LMMDMAHISGLVAASVVADP---FKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGL---------  266 (447)
Q Consensus       200 livD~a~~~g~~~~~~~~~~---~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~~~~~~---------  266 (447)
                      +++|++|+.+....+.+...   +.++|++++|+|||+++|.| |+++++++.    ++.+.......+..         
T Consensus       292 l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~----~~~~~~~~~~~~yl~~~~~~~~~  367 (515)
T 2jis_A          292 LHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTS----NLLKRCHGSQASYLFQQDKFYDV  367 (515)
T ss_dssp             EEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCS----CHHHHHHCC---------CCSCG
T ss_pred             EEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChH----HHHHHHhcCCchhccCCcccccc
Confidence            99999987776644322111   22589999999999988887 999998730    13332111000000         


Q ss_pred             ---------CCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEeeeCCCCCeeEEecCCCCCC--
Q 013217          267 ---------QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGSDNHLVLVDLRPMGI--  334 (447)
Q Consensus       267 ---------~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~v~~~~~~~--  334 (447)
                               +.+... ...+++++++.+...++++..++..++++++.+.|.+ .|++++.+...+. +.+...+.++  
T Consensus       368 ~~~~~~~~~~~~rr~-~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~-v~f~~~p~~~~~  445 (515)
T 2jis_A          368 ALDTGDKVVQCGRRV-DCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVN-VCFWFVPPSLRG  445 (515)
T ss_dssp             GGCCGGGCSCSSCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSE-EEEEECCGGGTT
T ss_pred             cCCCCCCCCCCCCcc-cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeE-EEEEEeCccccc
Confidence                     111000 0123333444444467888899999999999999988 4898876432222 2232211110  


Q ss_pred             -----C-H-------HHHHHHHhhcCeEE-ccCCCCCCCCCCCCCeEEEec-CccccCCCCHHHHHHHHHHHHHHHH
Q 013217          335 -----D-G-------ARVEKILDMASITL-NKNSVPGDKSALVPGGIRIGS-PAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       335 -----~-~-------~~~~~~L~~~gI~v-~~~~~p~~~~~~~~~~iRig~-~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                           + .       ..+.+.|.+.|+.+ .....++     ....+|+++ +..++    ++|++++++.|++++.
T Consensus       446 ~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~-----~~~~lRis~~~~~~t----~edid~~~~~l~~~~~  513 (515)
T 2jis_A          446 KQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGT-----RGNFFRVVVANSALT----CADMDFLLNELERLGQ  513 (515)
T ss_dssp             CTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETT-----EEEEEEEECCCTTCC----HHHHHHHHHHHHHHHT
T ss_pred             cccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECC-----ceEEEEEEeCCCCCC----HHHHHHHHHHHHHHHh
Confidence                 1 0       12556676778654 2110011     124799998 77787    9999999999987653

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.92  E-value=3.2e-23  Score=201.74  Aligned_cols=309  Identities=16%  Similarity=0.112  Sum_probs=203.2

Q ss_pred             cCeeEecCCCCC--CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-H
Q 013217           21 KSLELIASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P   97 (447)
Q Consensus        21 ~~i~l~~~~n~~--~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~   97 (447)
                      ..|.|..++|+.  |+.+  ++    ..  ..+||..      . ..+++    +.+++++|+++++    |.+++|+ +
T Consensus        30 ~~i~l~~~~~~~~~~~~v--a~----~~--~~~Y~~~------~-~~~lr----~~la~~~~~~~~~----v~~~~G~~~   86 (356)
T 1fg7_A           30 GDVWLNANEYPTAVEFQL--TQ----QT--LNRYPEC------Q-PKAVI----ENYAQYAGVKPEQ----VLVSRGADE   86 (356)
T ss_dssp             CSEECSSCCCSSCCCCCC--CC----CC--TTSCCCS------S-CHHHH----HHHHHHHTSCGGG----EEEESHHHH
T ss_pred             ceEEeeCCCCCCCCCHhH--hh----hh--hccCCCc------c-HHHHH----HHHHHHhCCChHH----EEEcCCHHH
Confidence            457888888864  4444  21    11  1233332      1 13343    5788888988653    3447775 8


Q ss_pred             HHHHHHHHhcCCC-CEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 013217           98 ANFEVYTAILKPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG  176 (447)
Q Consensus        98 a~~~~~~al~~pg-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~  176 (447)
                      ++..++.++++|| |+|++..|.|.++..        .+...|.  +++.++++ +++.+|+++++++++  ++++|+++
T Consensus        87 ai~~~~~~~~~~g~d~Vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~--~~~~v~l~  153 (356)
T 1fg7_A           87 GIELLIRAFCEPGKDAILYCPPTYGMYSV--------SAETIGV--ECRTVPTL-DNWQLDLQGISDKLD--GVKVVYVC  153 (356)
T ss_dssp             HHHHHHHHHCCTTTCEEEECSSSCTHHHH--------HHHHHTC--EEEECCCC-TTSCCCHHHHHTSCT--TEEEEEEE
T ss_pred             HHHHHHHHHhCCCCCEEEEeCCChHHHHH--------HHHHcCC--EEEEeeCC-CCCCCCHHHHHHHhc--CCCEEEEe
Confidence            9999999999999 999999988876531        2233454  55566665 456799999998886  78999998


Q ss_pred             CCCCCC--CCChHHHH---HHHHHhCCEEEEehhhhccccccccCCC-CCCcccEEEeCCCccc--CCCCCceEEeecCC
Q 013217          177 ASAYPR--DFDYPRMR---QIADAVGALLMMDMAHISGLVAASVVAD-PFKYCDVVTTTTHKSL--RGPRGGMIFFKKDP  248 (447)
Q Consensus       177 ~~~~~~--~~~~~~i~---~ia~~~g~~livD~a~~~g~~~~~~~~~-~~~~~Di~~~s~~K~l--~Gp~gG~i~~~~~~  248 (447)
                      .++||+  ..+.+++.   ++|+ +|+++++|++|............ .....++++.|+||++  +|.|.|++++++  
T Consensus       154 ~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~--  230 (356)
T 1fg7_A          154 SPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANE--  230 (356)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECH--
T ss_pred             CCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeCH--
Confidence            888875  66665555   5555 89999999998533211111110 0013578899999987  477789999977  


Q ss_pred             cchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCC--cEeeeCCCCCeeEE
Q 013217          249 VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG--YKLVSGGSDNHLVL  326 (447)
Q Consensus       249 ~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~~~~~~~~~~~~~  326 (447)
                          ++.+.+.....+.   +++....++...+++......+++..+++.++++++.+.|.+.|  +.+. + ....+++
T Consensus       231 ----~~~~~l~~~~~~~---~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~-~~~~~~~  301 (356)
T 1fg7_A          231 ----EVINLLMKVIAPY---PLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVF-D-SETNYIL  301 (356)
T ss_dssp             ----HHHHHHHHHSCSS---CSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEEC-C-CSSSEEE
T ss_pred             ----HHHHHHHHhcCCC---CCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEC-C-CCCeEEE
Confidence                7777776643332   34444444434444321101156677888899999999998865  3333 2 2345567


Q ss_pred             ecCCCCCCCHHHHHHHHhhcCeEEcc-CCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217          327 VDLRPMGIDGARVEKILDMASITLNK-NSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       327 v~~~~~~~~~~~~~~~L~~~gI~v~~-~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~  393 (447)
                      +++.    +..++.+.|.++||.++. +..++     ..+.+|++++   +    ++|+++++++|++
T Consensus       302 ~~~~----~~~~l~~~L~~~gI~v~~~g~~~~-----~~~~iRis~~---~----~~e~~~~~~~l~~  353 (356)
T 1fg7_A          302 ARFK----ASSAVFKSLWDQGIILRDQNKQPS-----LSGCLRITVG---T----REESQRVIDALRA  353 (356)
T ss_dssp             EEET----THHHHHHHHHHTTEECEECTTSTT-----CTTEEEEECC---C----HHHHHHHHHHHHT
T ss_pred             EECC----CHHHHHHHHHHCCEEEEECCCCCC-----CCCeEEEEeC---C----HHHHHHHHHHHHh
Confidence            7764    567888888999999975 32222     1358999975   3    7899999988864

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.92  E-value=5.7e-23  Score=200.43  Aligned_cols=319  Identities=13%  Similarity=0.058  Sum_probs=207.8

Q ss_pred             cCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCc-HH
Q 013217           21 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SP   97 (447)
Q Consensus        21 ~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sG-s~   97 (447)
                      ..|+|..+++.  .++.+.+++...+..  ..+|+..       ...+++    +.+++++|++++.    |.+++| ++
T Consensus        25 ~~idl~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~~-------~~~~l~----~~la~~~~~~~~~----v~~~~g~~~   87 (364)
T 1lc5_A           25 QLLDFSANINPLGMPVSVKRALIDNLDC--IERYPDA-------DYFHLH----QALARHHQVPASW----ILAGNGETE   87 (364)
T ss_dssp             GSEECSSCCCTTCCCHHHHHHHHHTGGG--GGSCCCT-------TCHHHH----HHHHHHHTSCGGG----EEEESSHHH
T ss_pred             ceEEeccccCCCCCCHHHHHHHHHHHHH--hhcCCCC-------CHHHHH----HHHHHHHCcCHHH----EEECCCHHH
Confidence            46888877774  579999999887653  1233321       123444    5778888987653    333555 58


Q ss_pred             HHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-CCCCCHHHHHHHhhhhCCcEEEEc
Q 013217           98 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAG  176 (447)
Q Consensus        98 a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~~~~~~~klii~~  176 (447)
                      ++..++.++  +||+|++..|.|.++..        .+...|.  +++.++++++ +..+ ++++.+.+.+ ++++|+++
T Consensus        88 al~~~~~~~--~gd~vl~~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~-l~~~~~~~~~-~~~~v~i~  153 (364)
T 1lc5_A           88 SIFTVASGL--KPRRAMIVTPGFAEYGR--------ALAQSGC--EIRRWSLREADGWQL-TDAILEALTP-DLDCLFLC  153 (364)
T ss_dssp             HHHHHHHHH--CCSEEEEEESCCTHHHH--------HHHHTTC--EEEEEECCGGGTTCC-CTTHHHHCCT-TCCEEEEE
T ss_pred             HHHHHHHHc--CCCeEEEeCCCcHHHHH--------HHHHcCC--eEEEEeCCcccccch-hHHHHHhccC-CCCEEEEe
Confidence            998888888  78999999988876531        2233454  4455555431 2222 4555555554 78998888


Q ss_pred             CCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhcccccccc--CCC-CCCcccEEEeCCCcccC--CCCCceEE-ee
Q 013217          177 ASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV--VAD-PFKYCDVVTTTTHKSLR--GPRGGMIF-FK  245 (447)
Q Consensus       177 ~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~--~~~-~~~~~Di~~~s~~K~l~--Gp~gG~i~-~~  245 (447)
                      .++||+  ..+   +++|.++|+++|+++++|++|..+ ...+.  ... .....+++++|+||+++  |.|.|+++ .+
T Consensus       154 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~  232 (364)
T 1lc5_A          154 TPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDF-IPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSD  232 (364)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGG-STTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhh-ccCccchhhHhccCCCEEEEEECchhhcCCccceEEEEECC
Confidence            777775  566   899999999999999999998543 22111  110 11136789999999984  66779999 77


Q ss_pred             cCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCCCCee
Q 013217          246 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHL  324 (447)
Q Consensus       246 ~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~  324 (447)
                      +      ++.+.+.....+   .+++....++...+++.  ....++..+++.++++.+.+.|++. |+++..+  ...+
T Consensus       233 ~------~~~~~l~~~~~~---~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~g~~  299 (364)
T 1lc5_A          233 D------AAMARMRRQQMP---WSVNALAALAGEVALQD--SAWQQATWHWLREEGARFYQALCQLPLLTVYPG--RANY  299 (364)
T ss_dssp             H------HHHHHHHHHSCT---TCSCHHHHHHHHHGGGC--HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCC--SSSE
T ss_pred             H------HHHHHHHHhCCC---CCCCHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCC--CCeE
Confidence            6      777777654332   23455444444444432  1235677778888899999999885 8876542  3445


Q ss_pred             EEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          325 VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       325 ~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      +++.+..   +..++.+.|.++||.+..+...+   ...++.+|+++.   +    ++|++++.++|+++++.
T Consensus       300 ~~~~~~~---~~~~l~~~l~~~gi~v~~g~~~~---~~~~~~iRis~~---~----~~~~~~l~~~l~~~~~~  359 (364)
T 1lc5_A          300 LLLRCER---EDIDLQRRLLTQRILIRSCANYP---GLDSRYYRVAIR---S----AAQNERLLAALRNVLTG  359 (364)
T ss_dssp             EEEEESC---TTCCHHHHHHTTTEECEECTTST---TCCTTEEEEECC---C----HHHHHHHHHHHHHHC--
T ss_pred             EEEECCC---cHHHHHHHHHHCCcEEeeCcccC---CCCCCEEEEEeC---C----HHHHHHHHHHHHHHhhc
Confidence            6666643   23467777888899996542111   123468999953   3    88999999999887654

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.92  E-value=9.6e-25  Score=218.68  Aligned_cols=281  Identities=14%  Similarity=0.142  Sum_probs=188.5

Q ss_pred             HHHHHHHHcCCCCCccceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEeccc
Q 013217           71 CQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL  149 (447)
Q Consensus        71 ~~~~~~~~~g~~~~~~~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  149 (447)
                      +++++++ +|++.     .+..++|+ +|+.+++.++++|||+|++..+.|.++..        .+...|.  +++.++.
T Consensus        62 ~~~~la~-~g~~~-----~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~--------~~~~~G~--~~~~v~~  125 (446)
T 2x3l_A           62 SMKQVEK-HSDYD-----GYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLH--------ALDISQQ--EGHFIET  125 (446)
T ss_dssp             HHHHHCS-CTTEE-----EEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHH--------HHHHHTC--CEEECEE
T ss_pred             HHHHHHh-cCCCc-----eEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHH--------HHHHcCC--eEEEEeC
Confidence            4478889 99872     23346765 99999999999999999999988876542        2334554  3344444


Q ss_pred             --CCCC---CCCCHHHHHHHhhhhCCcEEEEcCCCCCC-CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCC-C-
Q 013217          150 --DEST---GLVDYDMLEKTAILFRPKLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-K-  221 (447)
Q Consensus       150 --~~~~---~~id~~~l~~~~~~~~~klii~~~~~~~~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~-~-  221 (447)
                        +++.   +.+|++++   +.+ ++++|+++.+++.+ ..|+++|.++|+++|+++++|++|+..+.+.+. +... . 
T Consensus       126 ~~~~~~~~~~~~d~~~l---~~~-~~~~v~~~~~n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~-~~~~~~~  200 (446)
T 2x3l_A          126 HQSPLTNHYNKVNLSRL---NND-GHKLVVLTYPNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGF-PDSTLNY  200 (446)
T ss_dssp             EECTTTSSEEEEEC-----------CCEEEEESSCTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTS-CCCGGGG
T ss_pred             eeccccCcCCCCCHHHH---cCC-CceEEEEECCCCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCC-CCChHHc
Confidence              4221   46888887   344 78999888766655 789999999999999999999998653322222 1111 1 


Q ss_pred             cccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHH
Q 013217          222 YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN  300 (447)
Q Consensus       222 ~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~  300 (447)
                      ++|++++|+||++.|+.| |+++++++..   + ...+.........++++...++++.++++.+...+.+++.++..++
T Consensus       201 g~Di~~~S~~K~l~~~~g~g~l~~~~~~i---~-~~~~~~~~~~~~~~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l  276 (446)
T 2x3l_A          201 QADYVVQSFHKTLPALTMGSVLYIHKNAP---Y-RENIIEYLSYFQTSSPSYLIMASLESAAQFYKTYDSTLFFAKRAQL  276 (446)
T ss_dssp             TCSEEEECHHHHSSSCTTCEEEEEETTCT---T-HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             CCCEEEECCccccccccccEEEEEcCCcC---C-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            479999999999888766 9999987421   1 1222221111124677888888887777766543333355566666


Q ss_pred             HHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCC
Q 013217          301 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFS  380 (447)
Q Consensus       301 ~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~  380 (447)
                      ++.+++.    |++++... +...+++++.  +.++.++.+.|.++||.+..   ++      .+.+|++++..++    
T Consensus       277 ~~~l~~~----g~~~~~~~-~~~~l~i~~~--~~~~~~l~~~L~~~GI~v~~---~g------~~~iRi~~~~~~t----  336 (446)
T 2x3l_A          277 IECLENK----GFEMLQVD-DPLKLLIKYE--GFTGHDIQNWFMNAHIYLEL---AD------DYQALAILPLWHH----  336 (446)
T ss_dssp             HHHHHHH----TCEEEECS-STTEEEEECT--TSCHHHHHHHHHHTTEEESE---EC------SSCEEEECCCCCT----
T ss_pred             HHHHHHc----CCEECcCC-CCeEEEEEeC--CcCHHHHHHHHHHCCCEEEe---cC------CCEEEEEeecCCC----
Confidence            6655555    88887642 2334667764  56788899999888999852   11      2479999887666    


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 013217          381 EKEFVAIADFIHEGVEI  397 (447)
Q Consensus       381 ~~di~~l~~~i~~~l~~  397 (447)
                      ++|+ ++.++|+++++.
T Consensus       337 ~e~i-~l~~aL~~~~~~  352 (446)
T 2x3l_A          337 DDTY-LFDSLLRKIEDM  352 (446)
T ss_dssp             TCCC-CHHHHHHHHHTC
T ss_pred             HHHH-HHHHHHHHHHHh
Confidence            8889 999999888754

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.92  E-value=4.2e-23  Score=209.84  Aligned_cols=329  Identities=12%  Similarity=0.048  Sum_probs=210.1

Q ss_pred             CCHHHHHHHhhhhhcc---CCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCc-HHHHHHHHHH
Q 013217           32 TSRAVMEAVGSCLTNK---YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSG-SPANFEVYTA  105 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~---~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sG-s~a~~~~~~a  105 (447)
                      .|+.++++....+.+.   ...+|+      .......+++.+.+++.+.+|.+  ++.    |..++| ++++..++.+
T Consensus       107 ~p~~~~~~a~~~l~~~~~~~~~~Y~------~~~G~~~lr~~ia~~~~~~~g~~~~~~~----i~~t~G~~~al~~~~~~  176 (500)
T 3tcm_A          107 FSADSISRAKQILAMIPGRATGAYS------HSQGIHGLRDAIASGIASRDGFPANADD----IFLTDGASPGVHLMMQL  176 (500)
T ss_dssp             SCHHHHHHHHHHHTTSTTSCSSSCC------CTTCCHHHHHHHHHHHHHHHSSCCCGGG----EEEESSSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCCCcCCCcC------CCcChHHHHHHHHHHHHhhcCCCCCccc----EEEcCCHHHHHHHHHHH
Confidence            5666777666655442   112232      22223456655566777777744  443    333555 5899999999


Q ss_pred             hc-CCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-CCCCCHHHHHHHhhhh-----CCcEEEEcCC
Q 013217          106 IL-KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILF-----RPKLIIAGAS  178 (447)
Q Consensus       106 l~-~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~~~~~-----~~klii~~~~  178 (447)
                      ++ +|||+|++..|.|.++..        .+...|.  +++.++++++ ++.+|+++|++++++.     ++++|++..+
T Consensus       177 l~~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p  246 (500)
T 3tcm_A          177 LIRNEKDGILVPIPQYPLYSA--------SIALHGG--ALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINP  246 (500)
T ss_dssp             HCCSTTEEEEEEESCCTHHHH--------HHHHTTC--EEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESS
T ss_pred             HcCCCCCEEEEeCCCcHhHHH--------HHHHcCC--EEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECC
Confidence            98 899999999998876532        3344554  5566666643 5689999999999764     6888888877


Q ss_pred             CCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC-----------Ccc-cEEEeCCCccc---CCCC
Q 013217          179 AYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-----------KYC-DVVTTTTHKSL---RGPR  238 (447)
Q Consensus       179 ~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~-----------~~~-Di~~~s~~K~l---~Gp~  238 (447)
                      +||+  ..+   +++|.++|+++|+++++|++|..+....+....++           +.. .+++.|+||++   +|.|
T Consensus       247 ~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R  326 (500)
T 3tcm_A          247 GNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKR  326 (500)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGC
T ss_pred             CCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccc
Confidence            8875  444   56777779999999999999754322121111111           111 26678999998   4888


Q ss_pred             CceEEe---ecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHH----------hcChhHHHHHHHHHHHHHHHH
Q 013217          239 GGMIFF---KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH----------AQSPEFKVYQNKVVSNCRALA  305 (447)
Q Consensus       239 gG~i~~---~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~----------~~~~~~~~~~~~~~~~~~~l~  305 (447)
                      +|++++   ++      ++.+.+.....  ...+++....++++.++..          +. ....++.+++.++++.+.
T Consensus       327 ~G~~~~~~~~~------~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~l~  397 (500)
T 3tcm_A          327 GGYFEITGFSA------PVREQIYKIAS--VNLCSNITGQILASLVMNPPKASDESYASYK-AEKDGILASLARRAKALE  397 (500)
T ss_dssp             CEEEEEESCCT------THHHHHHHHHH--TTCCCCHHHHHHHHHHHSCCCSSSTHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCH------HHHHHHHHHHh--cccCCCHHHHHHHHHHhcCccccchhHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            899988   44      56666554321  1234455555555545431          11 224566778888999999


Q ss_pred             HHHHHC-CcEeeeCCCCCeeEEecCCCC----------CCCHHH--HHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecC
Q 013217          306 SRLVEL-GYKLVSGGSDNHLVLVDLRPM----------GIDGAR--VEKILDMASITLNKNSVPGDKSALVPGGIRIGSP  372 (447)
Q Consensus       306 ~~L~~~-g~~~~~~~~~~~~~~v~~~~~----------~~~~~~--~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~  372 (447)
                      +.|++. |+++..+ ..+.+.|+++...          +.....  +.+.|+++||.+..+..++.  +.....+|+++.
T Consensus       398 ~~L~~~~g~~~~~~-~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~--~~g~~~iRis~~  474 (500)
T 3tcm_A          398 HAFNKLEGITCNEA-EGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQ--VPGTWHFRCTIL  474 (500)
T ss_dssp             HHHHTSTTEECCCC-CBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCC--CTTCCBEEEESC
T ss_pred             HHHhcCCCcEEecC-CeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCC--CCCCCEEEEEEC
Confidence            999885 8887653 3455556444311          122222  45778889999965533322  123457999987


Q ss_pred             ccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          373 AMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       373 ~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                        ++    +++++++++.|.++++..
T Consensus       475 --~~----~e~i~~~i~~l~~~~~~~  494 (500)
T 3tcm_A          475 --PQ----EDKIPAVISRFTVFHEAF  494 (500)
T ss_dssp             --SC----TTTHHHHHHHHHHHHHHH
T ss_pred             --CC----HHHHHHHHHHHHHHHHHH
Confidence              44    789999999998887754

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.91  E-value=1e-23  Score=210.45  Aligned_cols=337  Identities=14%  Similarity=0.089  Sum_probs=217.9

Q ss_pred             hcCeeEecCCC-C--CCHHH--HHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHc-CCCCCccceeeecC
Q 013217           20 FKSLELIASEN-F--TSRAV--MEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF-NLDENKWGVNVQPL   93 (447)
Q Consensus        20 ~~~i~l~~~~n-~--~~~~v--~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~-g~~~~~~~~~v~~~   93 (447)
                      +..++|..+++ .  .++.+  ++++...+......+|+..      ....++++...+++.+.. +++++.+ ..|.++
T Consensus        47 ~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~------~g~~~lr~~ia~~~~~~~~~~~~~~~-~~i~~t  119 (430)
T 2x5f_A           47 STTYNATIGMATNKDGKMFASSLDAMFNDLTPDEIFPYAPP------QGIEELRDLWQQKMLRDNPELSIDNM-SRPIVT  119 (430)
T ss_dssp             TCSEECCCSSCEETTEECCCHHHHTTBSSCCGGGTSSCCCT------TCCHHHHHHHHHHHHHHCTTCCGGGB-CCCEEE
T ss_pred             CCcEEeeeeeccCCCCchhhHHHHHHHHhcCcccccccCCC------CCCHHHHHHHHHHHhccCcccCCCcc-ceEEEc
Confidence            45688877776 3  24555  7776655432111233321      112345433333333332 6665531 003335


Q ss_pred             Cc-HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccc-ccceeEEEecccCCCCCCCCHHHHHHHhhhh--C
Q 013217           94 SG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSG-TSIYFESMPYRLDESTGLVDYDMLEKTAILF--R  169 (447)
Q Consensus        94 sG-s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~--~  169 (447)
                      +| ++|+..++.++++|||+|++.+|.|.++..        .+.. .|.  +++.++++++++.+|++++++++++.  +
T Consensus       120 ~g~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~--------~~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~l~~~~~~  189 (430)
T 2x5f_A          120 NALTHGLSLVGDLFVNQDDTILLPEHNWGNYKL--------VFNTRNGA--NLQTYPIFDKDGHYTTDSLVEALQSYNKD  189 (430)
T ss_dssp             SHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHH--------HHTTTTCC--EEEEECCBCTTSCBCSHHHHHHHHHCCSS
T ss_pred             CCchHHHHHHHHHHhCCCCEEEEcCCcCccHHH--------HHHHhcCC--eEEEEeccCccCCcCHHHHHHHHHhcCCC
Confidence            66 589999999999999999999998877532        2233 444  55566665434679999999998763  6


Q ss_pred             CcEEEEcCCCCCC--CCC---hHHHHHHHHH-----hCCEEEEehhhhcccccccc-CCC---CC---Ccc---cEEEeC
Q 013217          170 PKLIIAGASAYPR--DFD---YPRMRQIADA-----VGALLMMDMAHISGLVAASV-VAD---PF---KYC---DVVTTT  229 (447)
Q Consensus       170 ~klii~~~~~~~~--~~~---~~~i~~ia~~-----~g~~livD~a~~~g~~~~~~-~~~---~~---~~~---Di~~~s  229 (447)
                      +++|+++.++||+  ..+   +++|.++|++     +|+++|+|++|.. +...+. ...   .+   ...   +++++|
T Consensus       190 ~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s  268 (430)
T 2x5f_A          190 KVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYG-LFYEDVYTQSLFTALTNLHSNAILPIRLDG  268 (430)
T ss_dssp             EEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTT-CBCSSSCCSCHHHHHHTTCCTTEEEEEEEE
T ss_pred             CEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhccc-ccCCcccchHHHHHHhhccCCcceEEEEEe
Confidence            7888888778875  566   7899999999     9999999999753 332221 111   11   124   678899


Q ss_pred             CCccc--CCCCCceEEe---ecCCcchhhHHHHhhhccCC---CCCCCCcHHHHHHHHHHHH-Hhc-ChhHHHHHHHHHH
Q 013217          230 THKSL--RGPRGGMIFF---KKDPVLGVELESAINNAVFP---GLQGGPHNHTIGGLAVCLK-HAQ-SPEFKVYQNKVVS  299 (447)
Q Consensus       230 ~~K~l--~Gp~gG~i~~---~~~~~~~~~~~~~i~~~~~~---~~~g~p~~~~~aal~~al~-~~~-~~~~~~~~~~~~~  299 (447)
                      +||++  +|.|.|++++   ++      ++.+.+......   ....+++....+++..+++ ... ....++..+++.+
T Consensus       269 ~sK~~~~~G~riG~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  342 (430)
T 2x5f_A          269 ATKEFFAWGFRVGFMTFGTSDQ------TTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKE  342 (430)
T ss_dssp             HHHHTTCGGGCCEEEEEBCCCH------HHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCCCCeEEEEEecCCH------HHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence            99998  4566799999   66      666666543221   0123445555555555665 320 0112336778888


Q ss_pred             HHHHHHHHHH----HCCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhh-cCeEEccCCCCCCCCCCCCCeEEEecCcc
Q 013217          300 NCRALASRLV----ELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIGSPAM  374 (447)
Q Consensus       300 ~~~~l~~~L~----~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~-~gI~v~~~~~p~~~~~~~~~~iRig~~~~  374 (447)
                      +++.+.+.|.    +.|+++..+ ..+.++|+++.  +.+..++.+.|.+ +||.+..    +     ..+.+|++++. 
T Consensus       343 ~~~~l~~~L~~~~~~~g~~~~~~-~~g~~~~~~~~--~~~~~~~~~~l~~~~gi~v~~----g-----~~~~iRis~~~-  409 (430)
T 2x5f_A          343 RYEVTKEVVYADQYHSHWQAYDF-NSGYFMAIKVH--DVDPEALRKHLIDKYSIGVIA----L-----NATDIRIAFSC-  409 (430)
T ss_dssp             HHHHHHHHHTCGGGTTTEEECCC-CBSSEEEEEES--SSCHHHHHHHHHHHHCEECEE----C-----SSSEEEEEGGG-
T ss_pred             HHHHHHHHHHhhCCCCCceeeCC-CceEEEEeCCC--CCCHHHHHHHHHHhCCEEEec----C-----CCCeEEEEEec-
Confidence            8899999998    567776543 33455777775  5577888888876 9999854    2     24589999874 


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHH
Q 013217          375 TTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       375 ~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      ++    +++++++++.|+++++.
T Consensus       410 ~~----~e~i~~~~~~l~~~l~~  428 (430)
T 2x5f_A          410 VE----KDDIPHVFDSIAKAIDD  428 (430)
T ss_dssp             SC----GGGHHHHHHHHHHHHHH
T ss_pred             CC----HHHHHHHHHHHHHHHHh
Confidence            34    88999999999988764

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.91  E-value=1.8e-23  Score=212.01  Aligned_cols=330  Identities=12%  Similarity=0.017  Sum_probs=210.1

Q ss_pred             HHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCcc------ceeeecCCcHHHHHHHHHHhc
Q 013217           34 RAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKW------GVNVQPLSGSPANFEVYTAIL  107 (447)
Q Consensus        34 ~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~------~~~v~~~sGs~a~~~~~~al~  107 (447)
                      ..+.+++...++. +..+      |.......++|+.+++++++++|++.+..      ...+.+++||+||..++.++.
T Consensus        88 ~~~~~~~~~~~n~-~~~~------~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~  160 (486)
T 1js3_A           88 AMLADMLCGAIGC-IGFS------WAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAAR  160 (486)
T ss_dssp             HHHHHHHHHHHCC-CCSS------GGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCc-Cccc------cccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHH
Confidence            3456666655432 1111      23345577899899999999999985310      012445667799988887653


Q ss_pred             CC---------CC--------E--EEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh
Q 013217          108 KP---------HD--------R--IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF  168 (447)
Q Consensus       108 ~p---------gd--------~--Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~  168 (447)
                      .+         ||        +  |+++.+.|.+..        +.+...|.  +++.++++ +++.+|+++|++++++ 
T Consensus       161 ~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~--------~~~~~~G~--~v~~v~~d-~~~~~d~~~L~~~i~~-  228 (486)
T 1js3_A          161 TKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVE--------RAGLIGGV--KLKAIPSD-GKFAMRASALQEALER-  228 (486)
T ss_dssp             HHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHH--------HHHHHHTC--EEEEECCC-TTSCCCHHHHHHHHHH-
T ss_pred             HHHhhhhhccCccchhcccCCCEEEEECCCCcHHHH--------HHHHhCCC--ceEEeecC-CCCCCCHHHHHHHHHH-
Confidence            21         43        3  777877776542        23445565  45555565 5789999999999976 


Q ss_pred             CC------cEEEEcCCCCC-C-CCChHHHHHHHHHhCCEEEEehhhhccccccccCC---CCCCcccEEEeCCCcccCCC
Q 013217          169 RP------KLIIAGASAYP-R-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA---DPFKYCDVVTTTTHKSLRGP  237 (447)
Q Consensus       169 ~~------klii~~~~~~~-~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~---~~~~~~Di~~~s~~K~l~Gp  237 (447)
                      ++      .+|+++.++++ + ..|+++|+++|+++|+++++|++|+.+....+...   ..+.++|++++++|||+.+|
T Consensus       229 ~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p  308 (486)
T 1js3_A          229 DKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN  308 (486)
T ss_dssp             HHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC
T ss_pred             HHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCC
Confidence            44      37777655444 3 78999999999999999999999876654332111   12236899999999999877


Q ss_pred             CC-ceEEeecCCcchhhH-HHHhhhc---cCC--------------CCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHH
Q 013217          238 RG-GMIFFKKDPVLGVEL-ESAINNA---VFP--------------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVV  298 (447)
Q Consensus       238 ~g-G~i~~~~~~~~~~~~-~~~i~~~---~~~--------------~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~  298 (447)
                      .+ |+++++++     .. .+.+...   ...              ...++... ...+++++++.+...+++++.++..
T Consensus       309 ~~~G~l~~~~~-----~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~-~~~~~~~al~~~g~~g~~~~~~~~~  382 (486)
T 1js3_A          309 FDCSAMWVKRR-----TDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRF-RSLKMWFVFRMYGVKGLQAYIRKHV  382 (486)
T ss_dssp             SSCEEEEESCH-----HHHHGGGC------------CCSCCCGGGSSSCSCCCC-THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEeCH-----HHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCch-hHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            66 99999873     32 3333110   000              00111111 2345566666555567888899999


Q ss_pred             HHHHHHHHHHHH-CCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEec-Ccccc
Q 013217          299 SNCRALASRLVE-LGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS-PAMTT  376 (447)
Q Consensus       299 ~~~~~l~~~L~~-~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~-~~~~~  376 (447)
                      ++++++.+.|.+ .|++++.+. ...++.+.+.+......++.+.|.+.|+.+..   |+..  .....+|+++ ...++
T Consensus       383 ~~a~~l~~~L~~~~~~~~~~~~-~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~---~~~~--~~~~~lRi~~~~~~~t  456 (486)
T 1js3_A          383 QLSHEFEAFVLQDPRFEVCAEV-TLGLVCFRLKGSDGLNEALLERINSARKIHLV---PCRL--RGQFVLRFAICSRKVE  456 (486)
T ss_dssp             HHHHHHHHHHHHCTTEEECSCC-CSSEEEEEESSCHHHHHHHHHHHHHHTSCBCE---EEEE--TTEEEEEEECCCTTCC
T ss_pred             HHHHHHHHHHhcCCCeEEeCCC-ceeEEEEEecChHHHHHHHHHHHHhcCCEEEE---EEEE--CCEEEEEEEeCCCCCC
Confidence            999999999998 489887542 23334444432110136677788777865321   1110  0134799995 44455


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Q 013217          377 RGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       377 ~g~~~~di~~l~~~i~~~l~~~  398 (447)
                          ++|++++++.|++++...
T Consensus       457 ----~~di~~~~~~l~~~~~~~  474 (486)
T 1js3_A          457 ----SGHVRLAWEHIRGLAAEL  474 (486)
T ss_dssp             ----HHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHHH
Confidence                999999999999887654

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.91  E-value=5.6e-23  Score=203.07  Aligned_cols=324  Identities=15%  Similarity=0.164  Sum_probs=200.6

Q ss_pred             CeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHH
Q 013217           22 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE  101 (447)
Q Consensus        22 ~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~  101 (447)
                      ...+.++.+++.+.+.+++.. +.+. ..+|...|+  +.+...+++    +++++++|.+.     .+.++||++|+..
T Consensus        29 ~~p~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~r~--~~~~~~~l~----~~la~~~g~~~-----~i~~~sG~~a~~~   95 (398)
T 1gc0_A           29 VPPVYQTATFTFPTVEYGAAC-FAGE-QAGHFYSRI--SNPTLNLLE----ARMASLEGGEA-----GLALASGMGAITS   95 (398)
T ss_dssp             SCCBCCCSCBCCC-------------------------CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHH
T ss_pred             CCCccCCCccccCCHHHHHHh-hcCC-cCCCcccCC--CChHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHH
Confidence            345667888888888877652 2222 123333332  344455555    68889999862     3556999999999


Q ss_pred             HHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCC
Q 013217          102 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP  181 (447)
Q Consensus       102 ~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~  181 (447)
                      ++.+++++||+|++..+.|+++.....    ......|.  +++.++.      .|++++++++++ +|++|++++++|+
T Consensus        96 ~l~~~~~~gd~vl~~~~~~~~~~~~~~----~~~~~~g~--~~~~~~~------~d~~~l~~~i~~-~~~~v~~~~~~np  162 (398)
T 1gc0_A           96 TLWTLLRPGDEVLLGNTLYGCTFAFLH----HGIGEFGV--KLRHVDM------ADLQALEAAMTP-ATRVIYFESPANP  162 (398)
T ss_dssp             HHHHHCCTTCEEEEESSCCSHHHHHHH----HTGGGGTC--EEEEECT------TCHHHHHHHCCT-TEEEEEEESSCTT
T ss_pred             HHHHHhcCCCEEEEeCCCchhHHHHHH----HHHHHcCC--EEEEECC------CCHHHHHHhcCC-CCeEEEEECCCCC
Confidence            999999999999999999887642110    00122343  4444332      389999999987 8999999877776


Q ss_pred             C--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHH
Q 013217          182 R--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELE  255 (447)
Q Consensus       182 ~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~  255 (447)
                      +  ..|+++|.++|+++|+++++|++|..+....     ++. ++|+++.|+||+++||.   ||++++++      +..
T Consensus       163 tG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~-----~~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~------~~~  231 (398)
T 1gc0_A          163 NMHMADIAGVAKIARKHGATVVVDNTYCTPYLQR-----PLELGADLVVHSATKYLSGHGDITAGIVVGSQ------ALV  231 (398)
T ss_dssp             TCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCC-----GGGGTCSEEEEETTTTTTCSSSCCCEEEEECH------HHH
T ss_pred             CcccccHHHHHHHHHHcCCEEEEECCCcccccCC-----chhhCceEEEECCccccCCCCCCeEEEEEECh------HHH
Confidence            4  7799999999999999999999997665422     222 48999999999998765   58998887      433


Q ss_pred             H-HhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCC-cE--------------eeeC-
Q 013217          256 S-AINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG-YK--------------LVSG-  318 (447)
Q Consensus       256 ~-~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~--------------~~~~-  318 (447)
                      + .+.........++.+....++...+++     .+..+.++..++++.+.+.|.+.+ +.              +... 
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~  306 (398)
T 1gc0_A          232 DRIRLQGLKDMTGAVLSPHDAALLMRGIK-----TLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQ  306 (398)
T ss_dssp             HHHHHTHHHHHTCCCCCHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC--------------
T ss_pred             HHHHHHHhhccCCCCCCHHHHHHHHhccc-----hHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhh
Confidence            3 444322110123445443333333332     345667888899999999998732 22              1110 


Q ss_pred             -CCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCC---------CCCC------------CCCCCCeEEEecCcccc
Q 013217          319 -GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSV---------PGDK------------SALVPGGIRIGSPAMTT  376 (447)
Q Consensus       319 -~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~---------p~~~------------~~~~~~~iRig~~~~~~  376 (447)
                       .....++.+.+..   +...+.+.|.+.+|.+.....         |...            ....++.||++++..++
T Consensus       307 ~~~~~~~~~~~l~~---~~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~  383 (398)
T 1gc0_A          307 MSQPGGMIAFELKG---GIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDI  383 (398)
T ss_dssp             --CCTTEEEEEETT---HHHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCH
T ss_pred             CCCCceEEEEEECC---CHHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCH
Confidence             0123444445432   235677888888877643110         1100            01124689999998877


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 013217          377 RGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       377 ~g~~~~di~~l~~~i~~~  394 (447)
                          +++++.+.++|+++
T Consensus       384 ----~~~i~~l~~al~~~  397 (398)
T 1gc0_A          384 ----DDLLADVQQALKAS  397 (398)
T ss_dssp             ----HHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHhc
Confidence                99999999888754

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.91  E-value=3.8e-23  Score=204.23  Aligned_cols=325  Identities=11%  Similarity=0.017  Sum_probs=212.0

Q ss_pred             cCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCC-CccceeeecCCcHHHH
Q 013217           21 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE-NKWGVNVQPLSGSPAN   99 (447)
Q Consensus        21 ~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~-~~~~~~v~~~sGs~a~   99 (447)
                      ..+++.+++..+|+.|++++......  ..++  .++  +..+ ..+.+.+++++++++|++. +++  .+.+++|++|+
T Consensus        40 ~~~~~~~~~~~~~~~v~~a~~~~~~~--~~~~--~~~--~~~~-~~~~~~~~~~la~~~g~~~~~~i--~~~t~g~t~al  110 (398)
T 2fyf_A           40 RDGRFGSGPSKVRLEQLQTLTTTAAA--LFGT--SHR--QAPV-KNLVGRVRSGLAELFSLPDGYEV--ILGNGGATAFW  110 (398)
T ss_dssp             SSCBCCSSSCCCCHHHHHGGGTTTTT--TTTS--CTT--SHHH-HHHHHHHHHHHHHHTTCCTTCEE--EEEETCHHHHH
T ss_pred             CCccccCCCCCCCHHHHHHHhhcCCC--ccCc--CcC--CHHH-HHHHHHHHHHHHHHhCCCCCceE--EEeCCchhHHH
Confidence            45788899889999999998763111  0010  011  1222 2333456789999999974 222  11145666999


Q ss_pred             HHHHHHhcCCC-CEEEEecCCCCcccCCCccccccccccc--cceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 013217          100 FEVYTAILKPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGT--SIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG  176 (447)
Q Consensus       100 ~~~~~al~~pg-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~  176 (447)
                      .+++.++++|| |.|  ....|+....       ......  |.....++  ++ ++...+. +    +++ +|++|+++
T Consensus       111 ~~~~~~l~~~gv~~v--~~~~~~~~~~-------~~~~~~~~g~~~~~v~--~~-~g~~~~~-~----i~~-~~~~v~~~  172 (398)
T 2fyf_A          111 DAAAFGLIDKRSLHL--TYGEFSAKFA-------SAVSKNPFVGEPIIIT--SD-PGSAPEP-Q----TDP-SVDVIAWA  172 (398)
T ss_dssp             HHHHHHTCSSCEEEE--ECSHHHHHHH-------HHHHHCTTSCCCEEEE--CC-TTCCCCC-C----CCT-TCSEEEEE
T ss_pred             HHHHHHhcCCCeEEE--eCCHHHHHHH-------HHHHHhCCCCceEEEe--cC-CCCCCCc-c----ccC-CCCEEEEe
Confidence            99999999998 444  2222211000       001122  33333334  44 2233332 1    444 89999888


Q ss_pred             CCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhh
Q 013217          177 ASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVE  253 (447)
Q Consensus       177 ~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~  253 (447)
                      .++|++  ..|+++|.++   +|+++++|++|+.|....     ++..+|++++|+||+++++.| |++++++      +
T Consensus       173 ~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~~~-----~~~~~di~~~s~sK~~~~~gg~g~l~~~~------~  238 (398)
T 2fyf_A          173 HNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLPV-----DIAETDAYYFAPQKNFASDGGLWLAIMSP------A  238 (398)
T ss_dssp             SEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTSCC-----CGGGCSEEEECTTSTTCSCSSEEEEEECH------H
T ss_pred             CcCCCcceecchHHhhhh---cCCeEEEEeccccCCccc-----CcccCcEEEEecCcccCCCCceEEEEECH------H
Confidence            766664  7788888777   899999999997765432     222479999999999876645 8888887      5


Q ss_pred             HHHHhhhc----------c----------CCCCCCCCcHHHHHHHHHHHHHhcChh-HHHHHHHHHHHHHHHHHHHHHC-
Q 013217          254 LESAINNA----------V----------FPGLQGGPHNHTIGGLAVCLKHAQSPE-FKVYQNKVVSNCRALASRLVEL-  311 (447)
Q Consensus       254 ~~~~i~~~----------~----------~~~~~g~p~~~~~aal~~al~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~-  311 (447)
                      +.+++...          .          .....++++...++++..+++.+...+ +++..+++.++++++.+.|++. 
T Consensus       239 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~  318 (398)
T 2fyf_A          239 ALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERP  318 (398)
T ss_dssp             HHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             HHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            65554210          0          012346778877777778888765444 7888899999999999999986 


Q ss_pred             CcEeee--C-CCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHH
Q 013217          312 GYKLVS--G-GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIA  388 (447)
Q Consensus       312 g~~~~~--~-~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~  388 (447)
                      |+++..  + ...++++++.+.. +++..++.+.|.+.||.++.+    . .....+.+|++++..++    ++|+++++
T Consensus       319 g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~~gI~v~~g----~-~~~~~~~iRis~~~~~t----~e~i~~~~  388 (398)
T 2fyf_A          319 YTTPFVTDPGLRSQVVGTIDFVD-DVDAGTVAKILRANGIVDTEP----Y-RKLGRNQLRVAMFPAVE----PDDVSALT  388 (398)
T ss_dssp             TEEESCCSGGGBCSSEEEEEECT-TSCHHHHHHHHHHTTCBCCSC----C-TTTCSSEEEEECCTTSC----HHHHHHHH
T ss_pred             CceeccCChhhcCCcEEEEECCC-CCCHHHHHHHHHHCCcEEecC----c-ccCCCCEEEEEecCCCC----HHHHHHHH
Confidence            888764  2 1123366777643 567888999998889998643    1 11224689999987777    99999999


Q ss_pred             HHHHHHHH
Q 013217          389 DFIHEGVE  396 (447)
Q Consensus       389 ~~i~~~l~  396 (447)
                      +.|++++.
T Consensus       389 ~~l~~~l~  396 (398)
T 2fyf_A          389 ECVDWVVE  396 (398)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988765

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.91  E-value=3.7e-23  Score=205.93  Aligned_cols=340  Identities=13%  Similarity=0.080  Sum_probs=211.8

Q ss_pred             hhcCeeEecCCCC-----CCHHHHHHHh--hhhhcc-CCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceee
Q 013217           19 QFKSLELIASENF-----TSRAVMEAVG--SCLTNK-YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNV   90 (447)
Q Consensus        19 ~~~~i~l~~~~n~-----~~~~v~~a~~--~~~~~~-~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v   90 (447)
                      ....|+|..+..-     +++.+++++.  ..+.+. ...+||+     ......+++    +.+++++++++++    |
T Consensus        24 ~~~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~-----~~~g~~~lr----~~ia~~~~~~~~~----i   90 (423)
T 3ez1_A           24 RGLNLNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYPG-----GVAGLPSAR----ALFAGYLDVKAEN----V   90 (423)
T ss_dssp             HTCCEESCCCCCCHHHHHTTGGGGGSCCGGGCEETTEETTSSCS-----CTTCCHHHH----HHHHHHTTSCGGG----E
T ss_pred             CCceEecCCCCCChHhCCCcHHHHHHHhhhHHhhcchhhhCCCC-----CCCChHHHH----HHHHHHhCCChhh----E
Confidence            4466888766654     4557888775  433311 0123421     112223444    5788888988764    3


Q ss_pred             ecCCcH-HHHH--HHHHHhcC--C---------CCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCC
Q 013217           91 QPLSGS-PANF--EVYTAILK--P---------HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLV  156 (447)
Q Consensus        91 ~~~sGs-~a~~--~~~~al~~--p---------gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i  156 (447)
                      .+++|+ +++.  .++.++++  |         ||+|++.+|.|.++..        .+...|.  ++++++++++  .+
T Consensus        91 ~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~--g~  158 (423)
T 3ez1_A           91 LVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFL--------LLQTLGF--ELLTVDMQSD--GP  158 (423)
T ss_dssp             EECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHH--------HHHHHTC--EEEEEEEETT--EE
T ss_pred             EEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHH--------HHHHcCC--EEEeccCCCC--CC
Confidence            346665 7886  78888887  8         5999999988866531        2334454  5556556533  49


Q ss_pred             CHHHHHHHhh-hhCCcEEEEc-CCCCCC--CCChH---HHHHHH-HHhCCEEEEehhhhcccccc-ccCC--CC------
Q 013217          157 DYDMLEKTAI-LFRPKLIIAG-ASAYPR--DFDYP---RMRQIA-DAVGALLMMDMAHISGLVAA-SVVA--DP------  219 (447)
Q Consensus       157 d~~~l~~~~~-~~~~klii~~-~~~~~~--~~~~~---~i~~ia-~~~g~~livD~a~~~g~~~~-~~~~--~~------  219 (447)
                      |+++|+++++ ..++++|++. .++||+  ..+.+   +|.++| +++|+++|+|++|....... +..+  +.      
T Consensus       159 d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~  238 (423)
T 3ez1_A          159 DVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARD  238 (423)
T ss_dssp             CHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHH
T ss_pred             CHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhc
Confidence            9999999995 3378998765 567775  66665   888888 89999999999975322222 1111  00      


Q ss_pred             --CCcccEEEeCCCcc-cCCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcC---hhHHHH
Q 013217          220 --FKYCDVVTTTTHKS-LRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQS---PEFKVY  293 (447)
Q Consensus       220 --~~~~Di~~~s~~K~-l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~---~~~~~~  293 (447)
                        ....++++.|+||+ ++|.|.|+++.++      ++.+.+......... +++.....+...+++.+..   ..+++.
T Consensus       239 ~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~------~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~  311 (423)
T 3ez1_A          239 AGYPDRAFVFASTSKITFAGAGLGFVASSE------DNIRWLSKYLGAQSI-GPNKVEQARHVKFLTEYPGGLEGLMRDH  311 (423)
T ss_dssp             HTCTTSEEEEEESTTTSCSSSSCEEEEECH------HHHHHHHHHHHHSCS-CCCHHHHHHHHHHHHHSTTHHHHHHHHH
T ss_pred             cCCCCeEEEEeCchhhccCCcceEEEEeCH------HHHHHHHHHHhhhcc-CCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence              11356889999996 4678889999987      677766543322222 2333333344445554111   123344


Q ss_pred             HHHHHHHHHHHHHHHHH----CC--cEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEcc-CCCCCCCCCCCCCe
Q 013217          294 QNKVVSNCRALASRLVE----LG--YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNK-NSVPGDKSALVPGG  366 (447)
Q Consensus       294 ~~~~~~~~~~l~~~L~~----~g--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~-~~~p~~~~~~~~~~  366 (447)
                      .+.+.++.+.+.+.|.+    .|  +.+..+ ...+++|+++...  +..++.+.|.++||.+.. +...+...+...++
T Consensus       312 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p-~~g~~~~~~~~~~--~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~  388 (423)
T 3ez1_A          312 AAIIAPKFRAVDEVLRAELGEGGEYATWTLP-KGGYFISLDTAEP--VADRVVKLAEAAGVSLTPAGATYPAGQDPHNRN  388 (423)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTTSSEEECCC-SBSSCEEEEESSS--CHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCE
T ss_pred             HHHHHHHHHHHHHHHHHhcCcCCCceEEeCC-CccEEEEEECCCC--cHHHHHHHHHHCCcEEecCcccccCCCCCCCCe
Confidence            45555566666666544    44  555433 3456678887542  577888999999999965 22111111123568


Q ss_pred             EEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          367 IRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       367 iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      +||++... +    ++++++.++.|.++++..
T Consensus       389 iRis~~~~-~----~~~i~~~~~~l~~~l~~~  415 (423)
T 3ez1_A          389 LRLAPTRP-P----VEEVRTAMQVVAACIRLA  415 (423)
T ss_dssp             EEECCSSS-C----HHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCC-C----HHHHHHHHHHHHHHHHHH
Confidence            99998644 5    899999999999988754

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.91  E-value=2.3e-23  Score=216.51  Aligned_cols=293  Identities=17%  Similarity=0.144  Sum_probs=201.8

Q ss_pred             HHHHHHHHHcCCCCCccceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecc
Q 013217           70 LCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR  148 (447)
Q Consensus        70 ~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  148 (447)
                      .++++++++||++..     +.+++|+ .||.+++.++++|||+|++..+.|.++..        .+..+|.  +++.++
T Consensus       199 eaE~~lA~~fGa~~a-----~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~--------~l~lsGa--~pv~v~  263 (715)
T 3n75_A          199 EAEQYIARVFNADRS-----YMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTH--------LMMMSDV--TPIYFR  263 (715)
T ss_dssp             HHHHHHHHHHTCSEE-----EEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHH--------HHHHSCC--EEEEEC
T ss_pred             HHHHHHHHHhCCCCc-----eEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHH--------HHHHcCC--EEEEEe
Confidence            456789999999863     3348886 99999999999999999999998877642        3445665  444433


Q ss_pred             cCCCCCC----C-----CHHHHHHHhhhh-C---CcEEEEcCCCCCC-CCChHHHHHHHHHhCCEEEEehhhhccccccc
Q 013217          149 LDESTGL----V-----DYDMLEKTAILF-R---PKLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAAS  214 (447)
Q Consensus       149 ~~~~~~~----i-----d~~~l~~~~~~~-~---~klii~~~~~~~~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~  214 (447)
                      .+.+++.    +     |+++|+++++++ +   |++|+++.+++.+ ..|+++|.++|++++  +++|+||+.|+.+.+
T Consensus       264 ~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~pn~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~  341 (715)
T 3n75_A          264 PTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSP  341 (715)
T ss_dssp             CCBCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESSCTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSG
T ss_pred             ccccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECCCCCCccCCHHHHHHHhCcCc--EEEccccccccccCC
Confidence            3322232    3     899999999863 2   3377887666666 789999999998653  799999988764333


Q ss_pred             cCC--CCCC---cccEE---EeCCCcccCCCC-CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHh
Q 013217          215 VVA--DPFK---YCDVV---TTTTHKSLRGPR-GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHA  285 (447)
Q Consensus       215 ~~~--~~~~---~~Di~---~~s~~K~l~Gp~-gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~  285 (447)
                      ..+  +++.   .+|++   ++|+||+|+|+. ||+++++++     ...++++.......+++|+...+|++.+|++.+
T Consensus       342 ~~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~-----i~~~~~~~~~~~~~STSpsy~~~AsldaA~~~~  416 (715)
T 3n75_A          342 IYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD-----VNEETFNEAYMMHTTTSPHYGIVASTETAAAMM  416 (715)
T ss_dssp             GGTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESC-----CCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHH
T ss_pred             ccccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCch-----hhHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Confidence            222  2332   25765   899999999984 599999874     223344444333446789999999999999887


Q ss_pred             cChhHHHHHHHHHHHHHHHHHHHHHC-----C--cEeeeCC-----------------------C-----CCeeEEecCC
Q 013217          286 QSPEFKVYQNKVVSNCRALASRLVEL-----G--YKLVSGG-----------------------S-----DNHLVLVDLR  330 (447)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~l~~~L~~~-----g--~~~~~~~-----------------------~-----~~~~~~v~~~  330 (447)
                      ......+++++..++++++++.|.+.     |  ++++.+.                       .     |.--++++.+
T Consensus       417 ~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~Kl~i~~~  496 (715)
T 3n75_A          417 KGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTP  496 (715)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTTEEEEECS
T ss_pred             HhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCCeEEEEEcC
Confidence            63345678899999999999999773     2  3443210                       0     1111233433


Q ss_pred             CC---------CCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          331 PM---------GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       331 ~~---------~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      ..         |+++.++.++|+++||.+....         ...+=+    +.|.|-++++++++.++|.+.-..
T Consensus       497 ~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d---------~~~vl~----l~s~g~~~~~~~~L~~aL~~~~~~  559 (715)
T 3n75_A          497 GMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTG---------PYNLLF----LFSIGIDKTKALSLLRALTDFKRA  559 (715)
T ss_dssp             CBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEE---------TTEEEE----ECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCccccCCCcHHHHHHHHHHCCCEEEecC---------CCcEEE----EeCCCCCHHHHHHHHHHHHHHHHH
Confidence            22         5778899999999999986531         123333    333455589999999998876543

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.91  E-value=1.2e-22  Score=204.32  Aligned_cols=330  Identities=17%  Similarity=0.171  Sum_probs=204.6

Q ss_pred             eeEecCCC--CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHH
Q 013217           23 LELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  100 (447)
Q Consensus        23 i~l~~~~n--~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~  100 (447)
                      +++.++.+  .+++++++++... .+          .|.......+++    +.+++++|.+.     .+.+++|++|+.
T Consensus        45 lD~~~~~~~~~~~~~~~~a~~~~-~~----------~y~~~~~~~~l~----~~la~~~~~~~-----~~~~~~gt~a~~  104 (456)
T 2ez2_A           45 IDLLTDSGTNAMSDKQWAGMMMG-DE----------AYAGSENFYHLE----RTVQELFGFKH-----IVPTHQGRGAEN  104 (456)
T ss_dssp             EECSCSSSCCCCCHHHHHHHTTC-CC----------CSSSCHHHHHHH----HHHHHHHCCSE-----EEEESSHHHHHH
T ss_pred             eeeccccCCccCCHHHHHHhhcc-hh----------hcccChhHHHHH----HHHHHHhCCCc-----EEEeCCcHHHHH
Confidence            34444443  4568888887521 11          122333445555    57888888763     344578889999


Q ss_pred             HHHHHhcCCCCEEEEecCCC-CcccCCCccccccccccccceeEEEecccCC----C-----CCCCCHHHHHHHhhhhCC
Q 013217          101 EVYTAILKPHDRIMGLDLPH-GGHLSHGFMTPKRRVSGTSIYFESMPYRLDE----S-----TGLVDYDMLEKTAILFRP  170 (447)
Q Consensus       101 ~~~~al~~pgd~Vl~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~-----~~~id~~~l~~~~~~~~~  170 (447)
                      .++.++++|||  ++.++.| +++.        ..+...|.  +++.+++++    +     ++.+|+++|++++++ ++
T Consensus       105 ~al~~l~~~gd--i~~~~~~~~~~~--------~~~~~~G~--~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~-~t  171 (456)
T 2ez2_A          105 LLSQLAIKPGQ--YVAGNMYFTTTR--------YHQEKNGA--VFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDE-KG  171 (456)
T ss_dssp             HHHHHHCCTTC--EEEESSCCHHHH--------HHHHHTTC--EEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHH-HC
T ss_pred             HHHHHhCCCCC--EeccccccchhH--------HHHHHcCC--EEEEecccccccccccccccCCCCHHHHHHHHHh-cc
Confidence            99999999999  6667766 3321        12334554  455555542    2     267899999999986 45


Q ss_pred             ----cEEEEcCCCC-CC--CCC---hHHHHHHHHHhCCEEEEehhhhcc---------ccccccCCC----CC-CcccEE
Q 013217          171 ----KLIIAGASAY-PR--DFD---YPRMRQIADAVGALLMMDMAHISG---------LVAASVVAD----PF-KYCDVV  226 (447)
Q Consensus       171 ----klii~~~~~~-~~--~~~---~~~i~~ia~~~g~~livD~a~~~g---------~~~~~~~~~----~~-~~~Di~  226 (447)
                          ++|++++++| ++  ..+   +++|.++|++||+++|+|++|+.|         ....+....    .+ ...|++
T Consensus       172 ~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~  251 (456)
T 2ez2_A          172 AENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGC  251 (456)
T ss_dssp             GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEE
T ss_pred             ccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEE
Confidence                8888886665 54  555   899999999999999999999775         333332100    00 136888


Q ss_pred             EeCCCcccCCCCCceEEeecCCcchhhHHHHhhhccC--CC--CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHH
Q 013217          227 TTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVF--PG--LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCR  302 (447)
Q Consensus       227 ~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~--~~--~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~  302 (447)
                      ++|+||+++.++||+++++++     ++.+.+.....  .+  ..++.+...+++++.++.....   +++.++..++.+
T Consensus       252 ~~S~kk~~~~~~gG~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~---~~~~~~~~~~~~  323 (456)
T 2ez2_A          252 TMSGKKDCLVNIGGFLCMNDD-----EMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ---YEYIEHRVKQVR  323 (456)
T ss_dssp             EEETTTTTCCSSCEEEEESCH-----HHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC---HHHHHHHHHHHH
T ss_pred             EEeCcccCCCCceeEEEECCH-----HHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhH---HHHHHHHHHHHH
Confidence            888999866567899998542     56655443211  11  1223333344443333322211   355677778888


Q ss_pred             HHHHHHHHCCcEeeeCCCCCeeEEecCCC--CCCCHHHH-----HHHH-hhcCeEEcc-CC--CCCCC-----CCCCCCe
Q 013217          303 ALASRLVELGYKLVSGGSDNHLVLVDLRP--MGIDGARV-----EKIL-DMASITLNK-NS--VPGDK-----SALVPGG  366 (447)
Q Consensus       303 ~l~~~L~~~g~~~~~~~~~~~~~~v~~~~--~~~~~~~~-----~~~L-~~~gI~v~~-~~--~p~~~-----~~~~~~~  366 (447)
                      ++.+.|.+.|+++..+ ...+++++++..  .+.+..++     .+.| .++||.+.. +.  .+...     .....+.
T Consensus       324 ~l~~~L~~~g~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~  402 (456)
T 2ez2_A          324 YLGDKLKAAGVPIVEP-VGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLET  402 (456)
T ss_dssp             HHHHHHHHTTCCBCSS-CCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCE
T ss_pred             HHHHHHhcCCCccccC-CCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCe
Confidence            9999998888876543 335666766531  23334444     5555 788997532 21  11100     0112368


Q ss_pred             EEEecCcc-ccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          367 IRIGSPAM-TTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       367 iRig~~~~-~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      +|++++.. ++    ++|++++++.|++++...
T Consensus       403 iRis~~~~~~t----~e~i~~~~~~l~~~l~~~  431 (456)
T 2ez2_A          403 VRLTIPRRVYT----YAHMDVVADGIIKLYQHK  431 (456)
T ss_dssp             EEEECCTTTCC----HHHHHHHHHHHHHHHHTG
T ss_pred             EEEEeCCCCCC----HHHHHHHHHHHHHHHhhh
Confidence            99998864 44    999999999999988753

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.91  E-value=1.2e-23  Score=209.12  Aligned_cols=285  Identities=18%  Similarity=0.162  Sum_probs=189.8

Q ss_pred             CCHHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccC-CCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC
Q 013217            4 CNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKY-SEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD   82 (447)
Q Consensus         4 ~~~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~-~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~   82 (447)
                      ..+++.+.+.+|.+++...++.++.+|  .+.|++++........ ..+..+..|  +....+.++    +++++++|.+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~n--~~~vl~A~~~~~~~~~~~~~~~g~~y--~~~~~~~l~----~~la~~~g~~   81 (431)
T 3ht4_A           10 KIAPIVKEVESQITEVHKRADEVIESN--QFRVLESFGKHKISDSHFIPTTGYGY--DDIGRDTLE----KVYADVFGAE   81 (431)
T ss_dssp             TSHHHHHHHHHHTHHHHHHHHHHHHHH--HHHHHHHHHHTTCCGGGSCCCCTTCC--SCHHHHHHH----HHHHHHTTCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhchhhhhcCCCCCCCC--ChhhHHHHH----HHHHHHhCCC
Confidence            345555666678888888898888888  6788888876432211 112222222  222234444    6899999998


Q ss_pred             CCccceeeecCCcHHHHHHHHHHhcCCCCEEEEec-CCCCcccCCCccc--cccccccccceeEEEecccCCCCCCCCHH
Q 013217           83 ENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLD-LPHGGHLSHGFMT--PKRRVSGTSIYFESMPYRLDESTGLVDYD  159 (447)
Q Consensus        83 ~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~-~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~id~~  159 (447)
                      .+.  +.++++||++|+..++.++++|||+|++.+ +.|+++.......  ....+...|.  +++.+++++ ++.+|++
T Consensus        82 ~~~--~~i~~~sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~--~~~~v~~~~-~~~~d~e  156 (431)
T 3ht4_A           82 AGL--VRPQIISGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNI--GYNAVPLTE-GGLVDFE  156 (431)
T ss_dssp             EEC--CBTTSCSHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTC--EEEECCBCT-TSSBCHH
T ss_pred             ccc--ccceeeCHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCC--EEEEeCCCC-CCCcCHH
Confidence            542  234468999999999999999999999998 7777653210000  0011223343  566666763 5789999


Q ss_pred             HHHHHhhhhCCcEEEEc-CCCCCC-----CCChHHHHHHHHH--hCCEEEEehhhhccccccccCCCCCC-cccEEEeCC
Q 013217          160 MLEKTAILFRPKLIIAG-ASAYPR-----DFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTT  230 (447)
Q Consensus       160 ~l~~~~~~~~~klii~~-~~~~~~-----~~~~~~i~~ia~~--~g~~livD~a~~~g~~~~~~~~~~~~-~~Di~~~s~  230 (447)
                      +|++++++ +|++|+++ +++||+     ..|+++|+++|++  +|+++++|++|+.+....    .|.. ++|++++|+
T Consensus       157 ~l~~~l~~-~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~----~~~~~g~Di~~~S~  231 (431)
T 3ht4_A          157 AVAAAIHS-NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQ----EPCHVGADLMAGSL  231 (431)
T ss_dssp             HHHHHCCT-TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSC----CGGGTTCSEEEEET
T ss_pred             HHHhhcCC-CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCC----CccccCCeEEEcCc
Confidence            99999987 89999998 456554     3468999999999  999999999986554211    1222 589999999


Q ss_pred             CcccCC---CCCceEEeecCCcchhhHHHHhhhccC-CCC--CCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHH
Q 013217          231 HKSLRG---PRGGMIFFKKDPVLGVELESAINNAVF-PGL--QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL  304 (447)
Q Consensus       231 ~K~l~G---p~gG~i~~~~~~~~~~~~~~~i~~~~~-~~~--~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l  304 (447)
                      ||+|+|   +.||++++++      ++.+.+..... ++.  ..++.......+..+++.     ...++++..++++.+
T Consensus       232 sK~lgg~~~~~GG~v~~~~------~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~a~~l  300 (431)
T 3ht4_A          232 IKNPGGGIVKTGGYIVGKE------QYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFFL-----APHVAGQALKGAIFT  300 (431)
T ss_dssp             TSGGGTTTCSSCEEEEECH------HHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred             cccCCCCCCCceEEEEecH------HHHHHHHHHhccCCcccccCccHHHHHHHHhHhhh-----HHHHHHHHHHHHHHH
Confidence            999876   7889999987      77777655222 221  112211111111222322     345678899999999


Q ss_pred             HHHHHHCCcEeee
Q 013217          305 ASRLVELGYKLVS  317 (447)
Q Consensus       305 ~~~L~~~g~~~~~  317 (447)
                      ++.|++.|+++.+
T Consensus       301 ~~~L~~~g~~v~p  313 (431)
T 3ht4_A          301 AAFLEKLGMNTSP  313 (431)
T ss_dssp             HHHHHHHTCCEES
T ss_pred             HHHHHhCcCEecC
Confidence            9999999988744

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.91  E-value=3.9e-23  Score=205.22  Aligned_cols=344  Identities=10%  Similarity=0.006  Sum_probs=207.7

Q ss_pred             hcCeeEecCCCCCCH----HHHHHHhhhhhccC----CCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCcccee
Q 013217           20 FKSLELIASENFTSR----AVMEAVGSCLTNKY----SEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVN   89 (447)
Q Consensus        20 ~~~i~l~~~~n~~~~----~v~~a~~~~~~~~~----~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~   89 (447)
                      ...++|-.+.+...+    .+.+++...+.+..    ..+|+.      .....++++...+++.+.+|..  +++    
T Consensus        31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~------~~g~~~lr~~ia~~~~~~~g~~~~~~~----  100 (417)
T 3g7q_A           31 PGAIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDG------PQGKTALLNALAVLLRETLGWDIEPQN----  100 (417)
T ss_dssp             -CCEECSCCCCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTC------TTSHHHHHHHHHHHHHHHHCCCCCGGG----
T ss_pred             CCceEecCcCCCCCChHHHHHHHHHHHHhhCCcccceeeccCC------CCCcHHHHHHHHHHHHHHhCCCCCccc----
Confidence            456888777665533    45566655543310    012322      2224456555556666666644  443    


Q ss_pred             eecCCcH-HHHHHHHHHhcCCCC-----EEEEe-cCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHH
Q 013217           90 VQPLSGS-PANFEVYTAILKPHD-----RIMGL-DLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLE  162 (447)
Q Consensus        90 v~~~sGs-~a~~~~~~al~~pgd-----~Vl~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~  162 (447)
                      |.+|+|+ +|+..++.++++|||     +|+++ +|.|.++.......  .  ...+....+.+++.+..++.+|+++++
T Consensus       101 i~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~d~~~l~  176 (417)
T 3g7q_A          101 IALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLED--D--LFVSARPNIELLPEGQFKYHVDFEHLH  176 (417)
T ss_dssp             EEEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-------C--CEEECCCEEEEEGGGEEEEECCGGGCC
T ss_pred             EEEeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccch--h--hhccccCcccccCCcccccccCHHHhc
Confidence            3335555 999999999999988     89987 88776653211000  0  111222344443332123568999888


Q ss_pred             HHhhhhCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhcccc---ccccCCCCCCcccEEEeCCCccc
Q 013217          163 KTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLV---AASVVADPFKYCDVVTTTTHKSL  234 (447)
Q Consensus       163 ~~~~~~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~---~~~~~~~~~~~~Di~~~s~~K~l  234 (447)
                        +.+ ++++|+++.++||+  ..+   +++|.++|++||+++|+|++|.....   ..+..+ .....++++.|+||++
T Consensus       177 --~~~-~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~  252 (417)
T 3g7q_A          177 --IGE-ETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEARP-LWNPNIILCMSLSKLG  252 (417)
T ss_dssp             --CCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCC-CCCTTEEEEEESGGGT
T ss_pred             --ccc-CceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCcccccccccccccc-CCCCCEEEEEechhcc
Confidence              554 78999988788875  566   78999999999999999999753211   111111 1124678899999963


Q ss_pred             -CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHH----H-HHHHHHHHHHHHHHHH
Q 013217          235 -RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK----V-YQNKVVSNCRALASRL  308 (447)
Q Consensus       235 -~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~----~-~~~~~~~~~~~l~~~L  308 (447)
                       +|.|.|+++.++      ++.+.+.........++ +....+++...++.   ..+.    + ..+++.++++.+.+.|
T Consensus       253 ~~G~r~G~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~l  322 (417)
T 3g7q_A          253 LPGSRCGIIIAND------KTITAIANMNGIISLAP-GGMGPAMMCEMIKR---NDLLRLSETVIKPFYYQRVQQTIAII  322 (417)
T ss_dssp             CTTSCCEEEECCH------HHHHHHHHHHHHHCCCC-CSHHHHHHHHHHHT---TCHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             CCCcceEEEEeCH------HHHHHHHHhhcceeeCC-CcHHHHHHHHHHcC---cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence             466779999877      67776654322212222 33333333334432   2222    2 3455667777788887


Q ss_pred             HHC----CcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC--CCC--CCCeEEEecCccccCCCC
Q 013217          309 VEL----GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK--SAL--VPGGIRIGSPAMTTRGFS  380 (447)
Q Consensus       309 ~~~----g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~--~~~--~~~~iRig~~~~~~~g~~  380 (447)
                      .+.    |+.+..+ ....++|+++...+.+..++.+.|.++||.+..+...+..  .+.  ..+.+|++++.  +    
T Consensus       323 ~~~l~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~--~----  395 (417)
T 3g7q_A          323 RRYLSEERCLIHKP-EGAIFLWLWFKDLPITTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP--E----  395 (417)
T ss_dssp             HHHCCTTTCEEECC-CBSSEEEEECTTCSSCHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS--C----
T ss_pred             HHhcccCCceeeCC-CcceEEEEEcCCCCCCHHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEEEEecC--C----
Confidence            662    5766543 3456778888654667888999999999999764322111  000  14589999863  4    


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 013217          381 EKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       381 ~~di~~l~~~i~~~l~~~  398 (447)
                      ++++++.++.|.+++...
T Consensus       396 ~~~i~~~~~~l~~~l~~~  413 (417)
T 3g7q_A          396 PDKIEAGVKILAEEIERA  413 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            899999999999988754

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.91  E-value=6.3e-23  Score=204.87  Aligned_cols=339  Identities=14%  Similarity=0.114  Sum_probs=205.8

Q ss_pred             cCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-H
Q 013217           21 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P   97 (447)
Q Consensus        21 ~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~   97 (447)
                      +.|+|..+++.  .++.|++++.+.+.+. ..+..... |+......++++.+.+++.+.+++++++    |.+++|+ +
T Consensus        57 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~~~~~~-y~~~~g~~~l~~~ia~~~~~~~~~~~~~----i~~t~G~~~  130 (432)
T 3ei9_A           57 QVISLGIGDTTEPIPEVITSAMAKKAHEL-STIEGYSG-YGAEQGAKPLRAAIAKTFYGGLGIGDDD----VFVSDGAKC  130 (432)
T ss_dssp             CCEECSSCCCCSCCCHHHHHHHHHHHHHT-TSTTTCCC-CCCTTCCHHHHHHHHHHHHTTTTCCGGG----EEEESCHHH
T ss_pred             CeEEccCCCCCCCCCHHHHHHHHHHHhcc-cccCCccC-CCCCCCCHHHHHHHHHHHHccCCCCcce----EEECCChHH
Confidence            46888766653  6899999998877631 11111111 2222223456655555555545766653    3447777 5


Q ss_pred             HHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccc----------eeEEEecccCCC-CCCCCHHHHHHHhh
Q 013217           98 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI----------YFESMPYRLDES-TGLVDYDMLEKTAI  166 (447)
Q Consensus        98 a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~----------~~~~~~~~~~~~-~~~id~~~l~~~~~  166 (447)
                      ++. ++.++++|||+|++.+|.|.++...        +...|.          ..+++.++++.+ +...|+++     .
T Consensus       131 al~-~l~~l~~~gd~Vl~~~p~y~~~~~~--------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~  196 (432)
T 3ei9_A          131 DIS-RLQVMFGSNVTIAVQDPSYPAYVDS--------SVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST-----V  196 (432)
T ss_dssp             HHH-HHHHHHCTTCCEEEEESCCTHHHHH--------HHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-----C
T ss_pred             HHH-HHHHHcCCCCEEEEeCCCCHHHHHH--------HHHcCCcccccccccccCceEEeccCcccCCcCChhh-----C
Confidence            555 4688899999999999998876421        112221          012334444422 23455432     2


Q ss_pred             hhCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCC--C---CcccEEEeCCCccc--
Q 013217          167 LFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP--F---KYCDVVTTTTHKSL--  234 (447)
Q Consensus       167 ~~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~--~---~~~Di~~~s~~K~l--  234 (447)
                       .++++|+++.++||+  ..+   +++|.++|+++|+++|+|++|..+ ...+.....  +   ...++++.|+||++  
T Consensus       197 -~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~-~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~  274 (432)
T 3ei9_A          197 -GRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMY-MSDDNPRSIFEIPGAEEVAMETASFSNYAGF  274 (432)
T ss_dssp             -CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGG-CCSSCCSSGGGSTTGGGTEEEEEESHHHHCT
T ss_pred             -CCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhh-ccCCCCCChhhcCCCCCeEEEEecchhccCC
Confidence             378999988888886  444   567778899999999999998643 222211111  1   13468999999987  


Q ss_pred             CCCCCceEEeecCCc--chhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCC
Q 013217          235 RGPRGGMIFFKKDPV--LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG  312 (447)
Q Consensus       235 ~Gp~gG~i~~~~~~~--~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  312 (447)
                      +|.|.|+++++++..  ....+.+.+....... .++++....++...++........++..+++.++++.+.+.|.+.|
T Consensus       275 ~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  353 (432)
T 3ei9_A          275 TGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTC-FNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSLG  353 (432)
T ss_dssp             TTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHS-CCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccceEEEEEChHHhhcchHHHHHHHHHHhccc-cCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            577789999987410  0000144443321111 2334444444444444321113356778889999999999999989


Q ss_pred             cEeeeCCCCCeeEEecCCCCCCCHHHHHHH-HhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217          313 YKLVSGGSDNHLVLVDLRPMGIDGARVEKI-LDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  391 (447)
Q Consensus       313 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i  391 (447)
                      +++..+ ..++++|+++.  +.+..++... ++++||.++.+..++   +...+.+|+++  .++    ++++++.++.|
T Consensus       354 ~~~~~~-~~~~~~~~~~~--~~~~~~~~~~ll~~~gv~v~~g~~f~---~~~~~~iRis~--~~~----~e~l~~~l~rl  421 (432)
T 3ei9_A          354 YDVYGG-KNAPYVWVHFP--NQSSWDVFAEILEKTHVVTTPGSGFG---PGGEGFVRVSA--FGH----RENILEACRRF  421 (432)
T ss_dssp             CCEEEC-SSSSEEEEECT--TSCHHHHHHHHHHHHCEECEEGGGGC---GGGTTEEEEEC--CSC----HHHHHHHHHHH
T ss_pred             ceecCC-CcceEEEEECC--CCCHHHHHHHHHHHCCEEEeCchHhC---CCCCCEEEEEe--cCC----HHHHHHHHHHH
Confidence            887754 34566788886  4456665554 566799997653332   12356899995  334    88988888877


Q ss_pred             HHH
Q 013217          392 HEG  394 (447)
Q Consensus       392 ~~~  394 (447)
                      ++.
T Consensus       422 ~~~  424 (432)
T 3ei9_A          422 KQL  424 (432)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.91  E-value=6.2e-23  Score=205.35  Aligned_cols=290  Identities=13%  Similarity=0.069  Sum_probs=189.6

Q ss_pred             HHHHHHHHHHHHHHcCCCCCccceeeecCCcH-HHHHHHHHHh-cCCCCEEEEecCCCCcccCCCcccccccccccccee
Q 013217           65 DELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYF  142 (447)
Q Consensus        65 ~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a~~~~~~al-~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~  142 (447)
                      .++....++++++++|++++    ++.+++|+ .++.+++.++ +++||+|+++.+.|+++.....    ......|.  
T Consensus       107 ~~~~~~~~~~la~~~g~~~~----~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~----~~a~~~G~--  176 (438)
T 1wyu_A          107 LQATFEYQTMIAELAGLEIA----NASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLR----AYLEAVGA--  176 (438)
T ss_dssp             HHHHHHHHHHHHHHHTSSEE----CSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHH----HHHHHTTC--
T ss_pred             HHHHHHHHHHHHHHhCCCcc----ceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHH----HHHHHCCC--
Confidence            34445677899999999864    33345655 4545555553 6899999999998876532110    00122454  


Q ss_pred             EEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC-CCChHHHHHHHHHhCCEEEEehh-hhccccccccCCCCC
Q 013217          143 ESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMA-HISGLVAASVVADPF  220 (447)
Q Consensus       143 ~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~-~~~~~~i~~ia~~~g~~livD~a-~~~g~~~~~~~~~~~  220 (447)
                      +++.++.  +++.+|+++    +++ +|++|+++.+|..+ ..|+++|.++|+++|+++++|.. ++.|...     .+-
T Consensus       177 ~v~~v~~--~~~~~d~~~----i~~-~t~~v~i~~pn~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~-----~~~  244 (438)
T 1wyu_A          177 KLLTLPL--EGGRTPLPE----VGE-EVGAVVVQNPNFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLK-----PPG  244 (438)
T ss_dssp             EEEEECC--BTTBCCCCC----CCT-TEEEEEEESSCTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBC-----CHH
T ss_pred             EEEEEcC--cCCccCHHH----hCC-CeEEEEEECCCCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcC-----CCc
Confidence            4445444  346788776    555 79999998774444 77999999999999999997754 5455321     111


Q ss_pred             C-cccEEEeCCCc-----ccCCCCCceEEeecCCcchhhHHHHhhhcc------CC-----------------CCCCCCc
Q 013217          221 K-YCDVVTTTTHK-----SLRGPRGGMIFFKKDPVLGVELESAINNAV------FP-----------------GLQGGPH  271 (447)
Q Consensus       221 ~-~~Di~~~s~~K-----~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~------~~-----------------~~~g~p~  271 (447)
                      . ++|++++|+||     |++||++|++++++      ++.+.+....      ..                 ...++++
T Consensus       245 ~~g~D~~~~s~kk~~~~~~~~Gp~~G~l~~~~------~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~  318 (438)
T 1wyu_A          245 AYGADIAVGDGQSLGLPMGFGGPHFGFLATKK------AFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSN  318 (438)
T ss_dssp             HHTCSEEEEECTTTTCCCGGGCSCCEEEEECG------GGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCC
T ss_pred             cCCCCEEEECCcccCCCccCCCCCeeEEEEcH------HHHHhCCCceeccccccCCCcceeeeccccccccchhcccCC
Confidence            1 48999999777     78899669999987      4444331100      00                 0013333


Q ss_pred             H---HHHHHHHHH--HHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhh
Q 013217          272 N---HTIGGLAVC--LKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDM  345 (447)
Q Consensus       272 ~---~~~aal~~a--l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~  345 (447)
                      .   ..+++++++  +..+...++++..+++.++++++.+.|++. |+++..+.  ..+.++.+.. +.+..++.+.|.+
T Consensus       319 ~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~--~~~~~~~~~~-~~~~~~~~~~L~~  395 (438)
T 1wyu_A          319 ITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPK--PFFNEFALAL-PKDPEAVRRALAE  395 (438)
T ss_dssp             CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCS--SBCSEEEEEC-SSCHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCC--CeEEEEEEeC-CCCHHHHHHHHHH
Confidence            3   344555444  554444567888899999999999999986 99887542  2222222221 2367889999988


Q ss_pred             cCeEE--ccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          346 ASITL--NKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       346 ~gI~v--~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      +||.+  +.+..      +.++.+|++++..++    ++|++++++.|++++
T Consensus       396 ~gi~v~~~~~~~------~~~~~lRis~~~~~t----~edi~~~~~~l~~~l  437 (438)
T 1wyu_A          396 RGFHGATPVPRE------YGENLALFAATELHE----EEDLLALREALKEVL  437 (438)
T ss_dssp             TTCCCCEECCTT------SCSSEEEEECCTTCC----HHHHHHHHHHHHHHC
T ss_pred             CCceeccccccc------cCCCeEEEEecccCC----HHHHHHHHHHHHHHh
Confidence            99988  32210      114689999988787    999999999987653

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.91  E-value=1.5e-22  Score=205.59  Aligned_cols=328  Identities=11%  Similarity=0.035  Sum_probs=207.9

Q ss_pred             CCHHHHHHHhhhhhccC---CCCCCCCcccCchhHHHHHHHHHHHHHHHHcC-C--CCCccceeeecCCcH-HHHHHHHH
Q 013217           32 TSRAVMEAVGSCLTNKY---SEGLPGKRYYGGNEYIDELETLCQKRALAAFN-L--DENKWGVNVQPLSGS-PANFEVYT  104 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~---~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g-~--~~~~~~~~v~~~sGs-~a~~~~~~  104 (447)
                      .|..+.+++...+....   ..+|+..      .....+++.+.+++.+..| .  +++    +|.+++|+ +++..++.
T Consensus       102 ~P~~~~~~~~~~l~~~~~~~~~~Y~~~------~G~~~lr~~ia~~~~~~~gG~~~~~~----~i~~t~G~~~ai~~~~~  171 (498)
T 3ihj_A          102 FPEDAKKRARRILQACGGNSLGSYSAS------QGVNCIREDVAAYITRRDGGVPADPD----NIYLTTGASDGISTILK  171 (498)
T ss_dssp             SCHHHHHHHHHHHHHC----------C------CSCHHHHHHHHHHHHHHTTTCCCCGG----GEEEESSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhccCCCCCCCCCC------CCHHHHHHHHHHHHHHhcCCCCCCcc----cEEEcCCHHHHHHHHHH
Confidence            46666666655555321   1123322      2233455555567777774 5  344    33346766 89999999


Q ss_pred             HhcCCCC----EEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-CCCCCHHHHHHHhhhh----CCcEEEE
Q 013217          105 AILKPHD----RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILF----RPKLIIA  175 (447)
Q Consensus       105 al~~pgd----~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~~~~~----~~klii~  175 (447)
                      +++++||    +|++..|.|.++..        .+...|.  ++++++++++ ++.+|+++|++++++.    ++++|++
T Consensus       172 ~l~~~gd~~~d~Vlv~~p~y~~~~~--------~~~~~g~--~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l  241 (498)
T 3ihj_A          172 ILVSGGGKSRTGVMIPIPQYPLYSA--------VISELDA--IQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCI  241 (498)
T ss_dssp             HHCCCCGGGSEEEEEEESCCTHHHH--------HHHHTTC--EEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEE
T ss_pred             HHcCCCCCCCCEEEEeCCCchhHHH--------HHHHcCC--EEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEE
Confidence            9999876    99999998876532        2344554  5666666643 5689999999999874    5899888


Q ss_pred             cCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhcccccccc-CCCCCCc------------c-cEEEeCCCccc--
Q 013217          176 GASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VADPFKY------------C-DVVTTTTHKSL--  234 (447)
Q Consensus       176 ~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~~~~~~------------~-Di~~~s~~K~l--  234 (447)
                      +.++||+  ..+   +++|.++|+++|+++++|++|... .+.+. ...++..            . -+++.|+||++  
T Consensus       242 ~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G  320 (498)
T 3ihj_A          242 INPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDN-VYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMG  320 (498)
T ss_dssp             ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTC-BCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTC
T ss_pred             ECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCcccc-ccCCCCCcCCHHHHHHHhcccccCceeEEEEecccccccc
Confidence            8888886  444   678999999999999999997443 33221 1111111            1 26778999998  


Q ss_pred             -CCCCCceEEe---ecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHH----------hcChhHHHHHHHHHHH
Q 013217          235 -RGPRGGMIFF---KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH----------AQSPEFKVYQNKVVSN  300 (447)
Q Consensus       235 -~Gp~gG~i~~---~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~----------~~~~~~~~~~~~~~~~  300 (447)
                       +|.|+||+++   ++      ++.+.+......  ...++....++++.++..          .. ....+..+++.++
T Consensus       321 ~~G~R~G~~~~~~~~~------~l~~~l~~~~~~--~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~-~~~~~~~~~l~~~  391 (498)
T 3ihj_A          321 ECGYRGGYMEVINLHP------EIKGQLVKLLSV--RLCPPVSGQAAMDIVVNPPVAGEESFEQFS-REKESVLGNLAKK  391 (498)
T ss_dssp             CSSSCCEEEEEESCCH------HHHHHHHHHHHH--SCCCCHHHHHHHHHHTCCCCTTSTTHHHHH-HHHHHHHHHHHHH
T ss_pred             CcccceEEEEEecCCH------HHHHHHHHHHhc--cCCCCHHHHHHHHHHhcCCccCcccHHHHH-HHHHHHHHHHHHH
Confidence             4889999984   44      666666543221  123344444444444321          00 1124556778889


Q ss_pred             HHHHHHHHHHC-CcEeeeCCCCCeeEEecCCC----------CCCCHHH--HHHHHhhcCeEEccCCCCCCCCCCCCCeE
Q 013217          301 CRALASRLVEL-GYKLVSGGSDNHLVLVDLRP----------MGIDGAR--VEKILDMASITLNKNSVPGDKSALVPGGI  367 (447)
Q Consensus       301 ~~~l~~~L~~~-g~~~~~~~~~~~~~~v~~~~----------~~~~~~~--~~~~L~~~gI~v~~~~~p~~~~~~~~~~i  367 (447)
                      ++.+.+.|.+. |+++..+ ..+.+.|+++..          .+++.++  +.++|+++||.+..+..++..  ..+.++
T Consensus       392 ~~~l~~~L~~~~g~~~~~p-~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~--~~~~~~  468 (498)
T 3ihj_A          392 AKLTEDLFNQVPGIHCNPL-QGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQR--EGTYHF  468 (498)
T ss_dssp             HHHHHHHHHTSTTEECCCC-CBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCC--TTCCBE
T ss_pred             HHHHHHHHhcCCCcEecCC-CeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCC--CCCCEE
Confidence            99999999885 8877653 335555655432          1344444  467788899998665333321  134589


Q ss_pred             EEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          368 RIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       368 Rig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      |+++.  ++    +++++++++.|.++++..
T Consensus       469 Ris~~--~~----~e~l~~~i~~L~~~~~~~  493 (498)
T 3ihj_A          469 RMTIL--PP----VEKLKTVLQKVKDFHINF  493 (498)
T ss_dssp             EEECC--SC----HHHHHHHHHHHHHHHHHH
T ss_pred             EEEeC--CC----HHHHHHHHHHHHHHHHHH
Confidence            99973  44    899999999999888754

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.91  E-value=7e-23  Score=204.24  Aligned_cols=294  Identities=13%  Similarity=0.010  Sum_probs=189.9

Q ss_pred             HHHHHHcCCCCCccceeeecCCcH-HHH--HHHHHHhcC--C----------CCEEEEecCCCCcccCCCcccccccccc
Q 013217           73 KRALAAFNLDENKWGVNVQPLSGS-PAN--FEVYTAILK--P----------HDRIMGLDLPHGGHLSHGFMTPKRRVSG  137 (447)
Q Consensus        73 ~~~~~~~g~~~~~~~~~v~~~sGs-~a~--~~~~~al~~--p----------gd~Vl~~~~~~~~~~~~~~~~~~~~~~~  137 (447)
                      +.+++++++++++    |.+|+|+ +++  ..++.++++  |          ||+|++.+|.|.++..        .+..
T Consensus        85 ~~ia~~~~~~~~~----i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~--------~~~~  152 (427)
T 3ppl_A           85 QIWADLLGVPVEQ----VLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFS--------ITER  152 (427)
T ss_dssp             HHHHHHHTSCGGG----EEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHH--------HHHH
T ss_pred             HHHHHHhCCCcce----EEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHH--------HHHH
Confidence            5677788888764    3347776 777  367788776  6          9999999998876532        2334


Q ss_pred             ccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCCCCC--CCChH---HHHHHH-HHhCCEEEEehhhhccc
Q 013217          138 TSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG-ASAYPR--DFDYP---RMRQIA-DAVGALLMMDMAHISGL  210 (447)
Q Consensus       138 ~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~-~~~~~~--~~~~~---~i~~ia-~~~g~~livD~a~~~g~  210 (447)
                      .|.  +++++++++ ++ +|+++|+++++..++++|++. .++||+  ..+.+   +|.++| +++|+++|+|++|.. +
T Consensus       153 ~g~--~~~~v~~~~-~g-~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~-~  227 (427)
T 3ppl_A          153 FGF--EMISVPMNE-DG-PDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAV-H  227 (427)
T ss_dssp             TTC--EEEEEEEET-TE-ECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTT-C
T ss_pred             cCC--EEEEeCCCC-CC-CCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcc-c
Confidence            454  555666664 33 999999999964478998876 567775  66666   888888 899999999999743 2


Q ss_pred             cccccCCCC-----------CCcccEEEeCCCccc-CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHH
Q 013217          211 VAASVVADP-----------FKYCDVVTTTTHKSL-RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGL  278 (447)
Q Consensus       211 ~~~~~~~~~-----------~~~~Di~~~s~~K~l-~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal  278 (447)
                      .+.+....+           ....++++.|+||++ +|.|.|+++.++      ++.+.+.........++ +.....++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~------~l~~~~~~~~~~~~~~~-~~~~q~~~  300 (427)
T 3ppl_A          228 TLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSA------ENRKWYTGHAGIRGIGP-NKVNQLAH  300 (427)
T ss_dssp             BSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCH------HHHHHHHHHHHHHCSCC-CHHHHHHH
T ss_pred             ccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCH------HHHHHHHHHhhcccCCC-CHHHHHHH
Confidence            222211111           113568899999984 577789999987      67666654322111222 33333333


Q ss_pred             HHHHHHh--cChhHHHHHHHHHHHHHHHHHHHHH----C-CcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEc
Q 013217          279 AVCLKHA--QSPEFKVYQNKVVSNCRALASRLVE----L-GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN  351 (447)
Q Consensus       279 ~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~----~-g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~  351 (447)
                      +.+++..  .....++..+.+.++.+.+.+.|.+    . ++.+..+ ...+++|+++...  +..++.+.|.++||.+.
T Consensus       301 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p-~~g~~~~~~~~~~--~~~~~~~~l~~~gv~v~  377 (427)
T 3ppl_A          301 ARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVP-AGGYFISLDVVPG--TASRVAELAKEAGIALT  377 (427)
T ss_dssp             HHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCC-SBSSCEEEECSTT--CHHHHHHHHHHTTEECC
T ss_pred             HHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCC-CccEEEEEECCcc--hHHHHHHHHHHCCCEEe
Confidence            3333320  0122344555666666777777654    2 4555443 3466778887642  57788889999999996


Q ss_pred             c-CCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          352 K-NSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       352 ~-~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      . +...+.......+++|+++... +    ++++++.++.|.++++..
T Consensus       378 ~~g~~~~~~~~~~~~~~Ris~~~~-~----~~~i~~~~~~l~~~l~~~  420 (427)
T 3ppl_A          378 GAGSSYPLRQDPENKNLRLAPSLP-P----VEELEVAMDGVATCVLLA  420 (427)
T ss_dssp             CTTTTSGGGCCTTSCEEEECCSSS-C----HHHHHHHHHHHHHHHHHH
T ss_pred             cCcCcCCCCCCCCCCeEEEECCCC-C----HHHHHHHHHHHHHHHHHH
Confidence            5 2111100112356899998544 4    899999999999988754

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.90  E-value=4.6e-23  Score=200.44  Aligned_cols=329  Identities=11%  Similarity=0.052  Sum_probs=203.9

Q ss_pred             eEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHH
Q 013217           24 ELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY  103 (447)
Q Consensus        24 ~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~  103 (447)
                      -|..+.++..+++++++...+    . +..+...|+..+...+++    +++++++|.+.     .+.+++|++|+..++
T Consensus        14 ~l~~~~~p~~~~~~~~~~~~~----~-~~~~~~~y~~~~~~~~l~----~~la~~~~~~~-----~i~~~~G~~a~~~al   79 (357)
T 3lws_A           14 GQISGHGKRNVGVLKTAFAAV----A-DEMASDQYGTGAIIEPFE----QKFADVLGMDD-----AVFFPSGTMAQQVAL   79 (357)
T ss_dssp             EESSBSSCCBHHHHHHHHTTS----C-TTCBCEETTEETTHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHH
T ss_pred             ccccCCCCCCHHHHHHHHHHh----h-cccCcccccCChHHHHHH----HHHHHHhCCCc-----EEEecCcHHHHHHHH
Confidence            345677777777766654321    1 112223345455566676    57888999864     244589999999999


Q ss_pred             HHhcCCCC--EEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCC
Q 013217          104 TAILKPHD--RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP  181 (447)
Q Consensus       104 ~al~~pgd--~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~  181 (447)
                      .+++++||  .|++.++.|...+...     ......|  .++++++.  +++.+|+++++++.   ++++|+++.++||
T Consensus        80 ~~~~~~gd~~~vi~~~~~~~~~~~~~-----~~~~~~g--~~~~~v~~--~~~~~d~~~l~~~~---~~~~v~~~~p~np  147 (357)
T 3lws_A           80 RIWSDETDNRTVAYHPLCHLEIHEQD-----GLKELHP--IETILVGA--ADRLMTLDEIKALP---DIACLLLELPQRE  147 (357)
T ss_dssp             HHHHHHHTCCEEEECTTCHHHHSSTT-----HHHHHSS--CEEEECSC--TTSCCCHHHHHTCC---SCSEEEEESSBGG
T ss_pred             HHHhhcCCCcEEEecccceeeeeccc-----hhhhccC--cEEEEecC--CCCCcCHHHHhcCc---CcceEEEEccccc
Confidence            99999998  6666655443332110     0112233  35555543  45689999999872   4899999877764


Q ss_pred             --C-CC---ChHHHHHHHHHhCCEEEEehhhhccccc-cccCCCCC-CcccEEEeCCCcccCCCCCceEEeecCCcchhh
Q 013217          182 --R-DF---DYPRMRQIADAVGALLMMDMAHISGLVA-ASVVADPF-KYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVE  253 (447)
Q Consensus       182 --~-~~---~~~~i~~ia~~~g~~livD~a~~~g~~~-~~~~~~~~-~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~  253 (447)
                        + ..   ++++|.++|++||+++++|++|..+... .+.....+ ...|+++.|+||+++||.||+++.++      +
T Consensus       148 ~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~gg~~~~~~------~  221 (357)
T 3lws_A          148 IGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIYISFYKGLGGIAGAILAGPA------A  221 (357)
T ss_dssp             GTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHHTTSSEEEEESSSTTCCSSCEEEEECH------H
T ss_pred             CCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHHhcCCEEEEeccccCCCCceEEEEcCH------H
Confidence              3 44   3889999999999999999997622111 11100011 24688899999999899999998877      6


Q ss_pred             HHHHhhhcc--CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCCCCeeEEecCC
Q 013217          254 LESAINNAV--FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLVLVDLR  330 (447)
Q Consensus       254 ~~~~i~~~~--~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~v~~~  330 (447)
                      +.+.+....  +.+...+.+....+++ .+++..     .+..++..++++++.+.|++. |+++....+.++++|+++.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~-----~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~  295 (357)
T 3lws_A          222 FCQTARIWKRRYGGDLISLYPYIVSAD-YYYELR-----KDRMGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFD  295 (357)
T ss_dssp             HHHHHHHHHHHTTCCCSCCHHHHHHHH-HHHHHH-----TTCHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEE
T ss_pred             HHHHHHHHHHHhcCCcccchHHHHHHH-HHHHHH-----HHHHHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEec
Confidence            766665321  1111111222222222 345442     223455677888999999885 8887432345667788875


Q ss_pred             CCC-CCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          331 PMG-IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       331 ~~~-~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      ..+ .+..++.+.|.++||.++.+..+.   + ....+|++....+. ..+++++++..+.|.+++
T Consensus       296 ~~~~~~~~~~~~~l~~~Gi~v~~g~~~~---~-~~~~~r~~i~~~~~-~~~~~~l~~al~~l~~al  356 (357)
T 3lws_A          296 GQAADISPKLEQVQEETGLGFVGYLVDK---D-GYCSTEISVGDAYG-ELDQQTRDAGFARLRQAF  356 (357)
T ss_dssp             SCHHHHHHHHHHHHHHHCEESCSCCEEC---S-SEEEEEEEBCTTGG-GSCHHHHHHHHHHHHHHC
T ss_pred             CChHHHHHHHHHHHHhcCeEEecccccC---C-CceEEEEEecchhh-hcCHHHHHHHHHHHHHhc
Confidence            421 125678888999999996542221   1 22378987653321 234777877777776653

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.90  E-value=6.9e-23  Score=197.12  Aligned_cols=283  Identities=13%  Similarity=0.096  Sum_probs=187.7

Q ss_pred             HHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC
Q 013217           72 QKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE  151 (447)
Q Consensus        72 ~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  151 (447)
                      ++.+++++|.+ +    .+.++||++|+..++.++++|||+|+++++.|+++.....    ......|.  +++.++.  
T Consensus         4 ~~~la~~~g~~-~----~i~~~sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~----~~~~~~g~--~~~~~~~--   70 (331)
T 1pff_A            4 EGKIAKLEHAE-A----CAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFE----HQLRKFGV--EVDFIDM--   70 (331)
T ss_dssp             HHHHHHHHTCS-E----EEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHH----THHHHTTC--EEEEECT--
T ss_pred             HHHHHHHhCCC-e----EEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHH----HHHHhcCC--EEEEeCC--
Confidence            36788999987 3    3556999999999999999999999999998877532110    00112343  4444332  


Q ss_pred             CCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHH-hCCEEEEehhhhccccccccCCCCCCcccEEEe
Q 013217          152 STGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADA-VGALLMMDMAHISGLVAASVVADPFKYCDVVTT  228 (447)
Q Consensus       152 ~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~-~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~  228 (447)
                          .|++++++.+++ ++++|++++++||+  ..|+++|.++|++ +|+++++|++|+.|...... .   .++|++++
T Consensus        71 ----~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~-~---~~~d~~~~  141 (331)
T 1pff_A           71 ----AVPGNIEKHLKP-NTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPL-D---LGVDIVVH  141 (331)
T ss_dssp             ----TSTTHHHHTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGG-G---GTCSEEEE
T ss_pred             ----CCHHHHHHhhcC-CCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCChh-h---cCCcEEEE
Confidence                578899998876 89999998777764  7799999999999 99999999999877543221 1   14899999


Q ss_pred             CCCcccCCCC---CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHH
Q 013217          229 TTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA  305 (447)
Q Consensus       229 s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~  305 (447)
                      |+||++++|.   +|+++++++     ++.+.+......+..++++.....+...+++.     ...+.++..++.+.+.
T Consensus       142 s~~K~~~~~~~r~~G~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~  211 (331)
T 1pff_A          142 SATKYINGHTDVVAGLVCSRAD-----IIAKVKSQGIKDITGAIISPHDAWLITRGTLT-----LDMRVKRAAENAQKVA  211 (331)
T ss_dssp             ETTTTTSSSSSCCCEEEEECHH-----HHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred             ECccccCCCCCceEEEEEeCcH-----HHHHHHHHHHHhhcCCCCCHHHHHHHHcCcch-----HHHHHHHHHHHHHHHH
Confidence            9999997664   689988863     56666766543312234444333332233432     3334556677777777


Q ss_pred             HHHHHC-C--------------cEeeeC--CCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCC-----------
Q 013217          306 SRLVEL-G--------------YKLVSG--GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPG-----------  357 (447)
Q Consensus       306 ~~L~~~-g--------------~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~-----------  357 (447)
                      +.|++. .              +++..+  .....++.+.+.    +..++.+.|.+.||.+...+..+           
T Consensus       212 ~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~  287 (331)
T 1pff_A          212 EFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD----GLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASM  287 (331)
T ss_dssp             HHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS----SHHHHHHHHHTCSSSEECSSCCSSSCEEECHHHH
T ss_pred             HHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC----CHHHHHHHHHhCCCceeccCCCCcceeeecchhh
Confidence            777653 1              111110  001234444443    56788899999999765431111           


Q ss_pred             -C---------CCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          358 -D---------KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       358 -~---------~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                       .         .....++.+|++++..++    +++++++.++|+++
T Consensus       288 ~~~~~~~~~~~~~g~~~~~iRis~~~~~t----~~~i~~l~~~l~~~  330 (331)
T 1pff_A          288 THAGVPKEEREAAGLTDNLIRLSVGCENV----QDIIDDLKQALDLV  330 (331)
T ss_dssp             TSTTSCHHHHHHTTCCTTEEEEECCSSCH----HHHHHHHHHHHHTC
T ss_pred             cccccCHHHHHhcCCCCCeEEEEEecCCH----HHHHHHHHHHHHHh
Confidence             0         001224789999998887    99999999988653

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.90  E-value=5.6e-22  Score=195.34  Aligned_cols=312  Identities=12%  Similarity=0.060  Sum_probs=201.9

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCC--
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKP--  109 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~p--  109 (447)
                      .+|.+.+++.+.+.. +.  +....  ...+...+++    +++++++|.+.     .+.++||++|+..++..+..+  
T Consensus        53 ~~p~v~~a~~~~~~~-~~--~~~~~--~~~~~~~~l~----~~la~~~g~~~-----v~~~~~gt~a~~~al~~~~~~~~  118 (392)
T 3ruy_A           53 RHPKIINALIDQANR-VT--LTSRA--FHSDQLGPWY----EKVAKLTNKEM-----VLPMNTGAEAVETAIKTARRWAY  118 (392)
T ss_dssp             TCHHHHHHHHHHHTT-CS--CCCTT--SEETTHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHh-cc--ccccc--cCCHHHHHHH----HHHHHhcCCCE-----EEEeCcHHHHHHHHHHHHHHhhh
Confidence            479999999887754 22  21111  1233344444    67888888432     244577889999988876544  


Q ss_pred             --------CCEEEEecCCCCcccCCCcccccc-cc--ccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCC
Q 013217          110 --------HDRIMGLDLPHGGHLSHGFMTPKR-RV--SGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS  178 (447)
Q Consensus       110 --------gd~Vl~~~~~~~~~~~~~~~~~~~-~~--~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~  178 (447)
                              ||+|++..+.|.+........... ..  .+......+..++      ..|+++|++++++ ++++|+++++
T Consensus       119 ~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~l~~-~~~~v~~~~~  191 (392)
T 3ruy_A          119 DVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIP------YGDLEALKAAITP-NTAAFILEPI  191 (392)
T ss_dssp             HTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEEC------TTCHHHHHHHCCT-TEEEEEECSS
T ss_pred             hccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeC------cccHHHHHHHhcc-CeEEEEEeCc
Confidence                    789999999886543110000000 00  0000000112211      1389999999985 8999999877


Q ss_pred             CCCC--CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-CCC-CC-cccEEEeCCCcccCC--CCCceEEeecC
Q 013217          179 AYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-ADP-FK-YCDVVTTTTHKSLRG--PRGGMIFFKKD  247 (447)
Q Consensus       179 ~~~~--~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~~~-~~-~~Di~~~s~~K~l~G--p~gG~i~~~~~  247 (447)
                      +||+  ..+    +++|.++|++||+++++|++|+ |+...+.. ... .+ ..|++++|  |+++|  .++|++++++ 
T Consensus       192 ~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~d~~~~S--K~l~gG~~~~G~~~~~~-  267 (392)
T 3ruy_A          192 QGEAGINIPPAGFLKEALEVCKKENVLFVADEIQT-GLGRTGKVFACDWDNVTPDMYILG--KALGGGVFPISCAAANR-  267 (392)
T ss_dssp             BSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTTSCCEEEEECH-
T ss_pred             cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechh-CCCccccchhhhccCCCCCEEEEc--hhhhCChhhhEEEEECH-
Confidence            7764  666    9999999999999999999984 43322211 100 11 25787665  99977  7889999987 


Q ss_pred             CcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCC---cEeeeCCCCCee
Q 013217          248 PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG---YKLVSGGSDNHL  324 (447)
Q Consensus       248 ~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g---~~~~~~~~~~~~  324 (447)
                           ++.+.+......+. .+++...+++...+++.+..   ++..+++.++++++.+.|++.+   +....+  ...+
T Consensus       268 -----~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~g~~  336 (392)
T 3ruy_A          268 -----DILGVFEPGSHGST-FGGNPLACAVSIAALEVLEE---EKLTERSLQLGEKLVGQLKEIDNPMITEVRG--KGLF  336 (392)
T ss_dssp             -----HHHTTCCTTSSCCS-STTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHTTCCCTTEEEEEE--ETTE
T ss_pred             -----HHHhhhccCCcCCC-CCCCHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHhcCCCceEEEe--eeeE
Confidence                 67766655433222 24455666666667776432   4567788899999999998864   222222  2334


Q ss_pred             EEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          325 VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       325 ~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      +++.+..   +..++.+.|.++||.++.+         ..+.+|++++..++    ++|++++++.|++++
T Consensus       337 ~~~~~~~---~~~~l~~~l~~~gi~v~~~---------~~~~iRi~~~~~~~----~~~i~~~~~~l~~~l  391 (392)
T 3ruy_A          337 IGIELNE---PARPYCEQLKAAGLLCKET---------HENVIRIAPPLVIS----EEDLEWAFQKIKAVL  391 (392)
T ss_dssp             EEEEESS---CSHHHHHHHHTTTEECCCB---------TTTEEEECCCTTCC----HHHHHHHHHHHHHHH
T ss_pred             EEEEEcc---hHHHHHHHHHHCCcEEecC---------CCCEEEEECCCCCC----HHHHHHHHHHHHHHh
Confidence            5555543   5678888898999998532         14689999887777    999999999998875

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.90  E-value=1.3e-22  Score=201.90  Aligned_cols=339  Identities=14%  Similarity=0.054  Sum_probs=208.4

Q ss_pred             hhcCeeEecCCCC-----CCHHHHHHHhhhhh--cc-CCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceee
Q 013217           19 QFKSLELIASENF-----TSRAVMEAVGSCLT--NK-YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNV   90 (447)
Q Consensus        19 ~~~~i~l~~~~n~-----~~~~v~~a~~~~~~--~~-~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v   90 (447)
                      +...|+|..+++.     +++.+++++...+.  .. ...+|+..      ....+++    +.+++++++++++    |
T Consensus        31 ~~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~------~G~~~lr----~~ia~~~~~~~~~----i   96 (422)
T 3d6k_A           31 KNLSLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGL------LGIADIR----ELWAEALGLPADL----V   96 (422)
T ss_dssp             TTCCEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCS------SCCHHHH----HHHHHHHTCCGGG----E
T ss_pred             cCCeEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCC------CCCHHHH----HHHHHHhCCChhH----E
Confidence            3456888888873     34467776654321  10 11234332      1123443    5677778888764    3


Q ss_pred             ecCCcH-HHH--HHHHHHhcCC------------CCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCC
Q 013217           91 QPLSGS-PAN--FEVYTAILKP------------HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGL  155 (447)
Q Consensus        91 ~~~sGs-~a~--~~~~~al~~p------------gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  155 (447)
                      .+|+|+ +++  ..++.++.++            +|+|++.+|.|.++..        .+...|.  +++.+++++ ++ 
T Consensus        97 ~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~--------~~~~~g~--~~~~v~~~~-~g-  164 (422)
T 3d6k_A           97 VAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFT--------ITEHFGF--EMINVPMTD-EG-  164 (422)
T ss_dssp             EECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHH--------HHHHHTC--EEEEEEEET-TE-
T ss_pred             EEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHH--------HHHHcCC--EEEecCCCC-CC-
Confidence            347776 666  4556667655            4589999998876531        2334454  555555653 33 


Q ss_pred             CCHHHHHHHhhhhCCcEEE-EcCCCCCC--CCChH---HHHHHHH-HhCCEEEEehhhhc-cccccccCCCCC-------
Q 013217          156 VDYDMLEKTAILFRPKLII-AGASAYPR--DFDYP---RMRQIAD-AVGALLMMDMAHIS-GLVAASVVADPF-------  220 (447)
Q Consensus       156 id~~~l~~~~~~~~~klii-~~~~~~~~--~~~~~---~i~~ia~-~~g~~livD~a~~~-g~~~~~~~~~~~-------  220 (447)
                      +|++++++++++.++++|+ ++.++||+  ..+.+   +|.++|+ ++|+++|+|++|.. ++...+....++       
T Consensus       165 ~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~  244 (422)
T 3d6k_A          165 PDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAA  244 (422)
T ss_dssp             ECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHT
T ss_pred             CCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhcc
Confidence            9999999999755789888 45677775  66665   7777787 89999999999863 333222111111       


Q ss_pred             --CcccEEEeCCCcc-cCCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc--ChhHHHHHH
Q 013217          221 --KYCDVVTTTTHKS-LRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ--SPEFKVYQN  295 (447)
Q Consensus       221 --~~~Di~~~s~~K~-l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~--~~~~~~~~~  295 (447)
                        ...++++.|+||+ ++|.|.|++++++      ++.+.+......... +++....++...+++...  ....++..+
T Consensus       245 ~~~~~~i~~~S~SK~~~~GlriG~~~~~~------~l~~~l~~~~~~~~~-~~~~~~q~a~~~~l~~~~~~~~~~~~~~~  317 (422)
T 3d6k_A          245 GNPNRFWFMSSTSKITHAGSGVSFFASSK------ENIEWYASHANVRGI-GPNKLNQLAHAQFFGDVAGLKAHMLKHAA  317 (422)
T ss_dssp             TCTTCEEEEEESTTTSCTTSSCEEEECCH------HHHHHHHHHHHHHCS-CCCHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEcChhhhcCcccceEEEEeCH------HHHHHHHHHHHhhcC-CCCHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence              1356889999997 3567889999987      677766543222222 234444444444443200  012344455


Q ss_pred             HHHHHHHHHHHHHHH----CC-cEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccC-CCCCCCCCCCCCeEEE
Q 013217          296 KVVSNCRALASRLVE----LG-YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKN-SVPGDKSALVPGGIRI  369 (447)
Q Consensus       296 ~~~~~~~~l~~~L~~----~g-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~-~~p~~~~~~~~~~iRi  369 (447)
                      .+.++++.+.+.|.+    .| +.+..+ ...+++|+++...  +..++.+.|.++||.+..+ ...........+++|+
T Consensus       318 ~~~~~~~~l~~~L~~~l~~~~~~~~~~p-~~g~~~~~~~~~~--~~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRi  394 (422)
T 3d6k_A          318 SLAPKFERVLEILDSRLSEYGVAKWTSP-TGGYFISVDVVPG--TASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRL  394 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGTCEEECCC-SBSSCEEEEESTT--CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEE
T ss_pred             HHHHHHHHHHHHHHHhcCcCCceEEeCC-CcceEEEEECCCC--CHHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEE
Confidence            566677777777765    33 554433 3456678887542  5677888999999999652 1110000012468999


Q ss_pred             ecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          370 GSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       370 g~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      ++.. ++    +++++++++.|++++...
T Consensus       395 s~~~-~~----~e~i~~~~~~l~~~l~~~  418 (422)
T 3d6k_A          395 APSL-PP----VAELEVAMDGFATCVLMA  418 (422)
T ss_dssp             CCSS-SC----HHHHHHHHHHHHHHHHHH
T ss_pred             ecCC-CC----HHHHHHHHHHHHHHHHHH
Confidence            9876 55    899999999999887643

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.90  E-value=1.2e-22  Score=200.64  Aligned_cols=283  Identities=16%  Similarity=0.142  Sum_probs=185.4

Q ss_pred             HHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC
Q 013217           71 CQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD  150 (447)
Q Consensus        71 ~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  150 (447)
                      .++++++++|.+.     .+.++||++|+..++.++++|||+|++.++.|+++.....    ......|.  +++.++. 
T Consensus        69 l~~~la~~~g~~~-----~i~~~sG~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~----~~~~~~g~--~~~~v~~-  136 (398)
T 2rfv_A           69 LEKKLAVLERGEA-----GLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLS----HSMPKFGI--NVRFVDA-  136 (398)
T ss_dssp             HHHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHH----THHHHTTC--EEEEECT-
T ss_pred             HHHHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHH----HHHHHcCC--EEEEeCC-
Confidence            3468889999862     3456899999999999999999999999998876532110    00123343  4445433 


Q ss_pred             CCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-cccEEE
Q 013217          151 ESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVT  227 (447)
Q Consensus       151 ~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-~~Di~~  227 (447)
                           .|++++++++++ +|++|++++++||+  ..|+++|.++|+++|+++++|++|..+....     ++. ++|+++
T Consensus       137 -----~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~-----~~~~~~di~~  205 (398)
T 2rfv_A          137 -----AKPEEIRAAMRP-ETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQ-----PLQLGADIVV  205 (398)
T ss_dssp             -----TSHHHHHHHCCT-TEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTTCC-----GGGGTCSEEE
T ss_pred             -----CCHHHHHHhcCC-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCC-----chhhCCcEEE
Confidence                 289999999987 89999998877774  7899999999999999999999987665421     222 489999


Q ss_pred             eCCCcccCCCC---CceEEeecCCcchhhHHH-HhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHH
Q 013217          228 TTTHKSLRGPR---GGMIFFKKDPVLGVELES-AINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRA  303 (447)
Q Consensus       228 ~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~-~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~  303 (447)
                      .|+||+++||.   ||++++++      ++.+ .+.........++++....++...+++.     ...+.++..++++.
T Consensus       206 ~s~sK~~~~~g~~~~G~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~  274 (398)
T 2rfv_A          206 HSVTKYINGHGDVIGGIIVGKQ------EFIDQARFVGLKDITGGCMSPFNAWLTLRGVKT-----LGIRMERHCENALK  274 (398)
T ss_dssp             EETTTTTTCSSCCCCEEEEECH------HHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHH
T ss_pred             EeCcccccCCCCceEEEEEECH------HHHHHHHHHHHHhCCCCCCCHHHHHHHHhhhhh-----HHHHHHHHHHHHHH
Confidence            99999987654   49999887      5544 4443221110234455444444444432     34556777888888


Q ss_pred             HHHHHHHCC---------------cEeeeC--CCCCeeEEecCCCCCCCHHHHHHHHhh---cCeEEccCCC------CC
Q 013217          304 LASRLVELG---------------YKLVSG--GSDNHLVLVDLRPMGIDGARVEKILDM---ASITLNKNSV------PG  357 (447)
Q Consensus       304 l~~~L~~~g---------------~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~L~~---~gI~v~~~~~------p~  357 (447)
                      +.+.|++.+               +++..+  .....++++++..   ........+++   .||.++.+..      |.
T Consensus       275 l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~l~~~~~~~~i~~~~G~~~~li~~~~  351 (398)
T 2rfv_A          275 IARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAG---GLEAGRRMINSVELCLLAVSLGDTETLIQHPA  351 (398)
T ss_dssp             HHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT---HHHHHHHHHTTCSSSEECSCCSSSSCEEECHH
T ss_pred             HHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC---CHHHHHHHHHhCCcceeccCCCCcceeeeccc
Confidence            998887743               111110  0124555666642   12334444444   4666654421      10


Q ss_pred             ---CC---------CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          358 ---DK---------SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       358 ---~~---------~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                         +.         .....+.+|++++..++    +++++++.++|+++
T Consensus       352 ~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~----~~~i~~l~~al~~~  396 (398)
T 2rfv_A          352 SMTHSPVAPEERLKAGITDGLIRLSVGLEDP----EDIINDLEHAIRKA  396 (398)
T ss_dssp             HHTSSSSCHHHHHHTTCCTTEEEEECCSSCH----HHHHHHHHHHHHHH
T ss_pred             ccccccCCHHHHHhcCCCCCeEEEEecCCCH----HHHHHHHHHHHHhh
Confidence               00         01125689999998877    99999999888653

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.90  E-value=2.3e-22  Score=193.85  Aligned_cols=304  Identities=15%  Similarity=0.104  Sum_probs=205.8

Q ss_pred             cCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC---CCCCccceeeecCCc
Q 013217           21 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN---LDENKWGVNVQPLSG   95 (447)
Q Consensus        21 ~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g---~~~~~~~~~v~~~sG   95 (447)
                      ..+.|..+++.  .++.+++++.+.+......+|+..    +   ..+++    +.++++++   ++++.    |.+++|
T Consensus        20 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~----~---~~~lr----~~la~~~~~~~~~~~~----v~~~~G   84 (335)
T 1uu1_A           20 DKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYYDS----P---DEELI----EKILSYLDTDFLSKNN----VSVGNG   84 (335)
T ss_dssp             CSEEESSCCCSSCCCHHHHHHHHHTCCGGGGGSCCCS----S---CHHHH----HHHHHHHTCSSCCGGG----EEEESS
T ss_pred             cceECCCCCCCCCCCHHHHHHHHHHhhhhhhhcCCCC----c---hHHHH----HHHHHHcCCCCCCHHH----EEEcCC
Confidence            45888888883  579999999887632111234321    1   23444    56778888   66543    334666


Q ss_pred             H-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEE
Q 013217           96 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII  174 (447)
Q Consensus        96 s-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii  174 (447)
                      + +++..++.++   ||+|++. |.|.++..        .+...|.  +++.++++ +++.+|++++     + ++++|+
T Consensus        85 ~~~al~~~~~~~---gd~Vl~~-p~y~~~~~--------~~~~~g~--~~~~v~~~-~~~~~d~~~l-----~-~~~~v~  143 (335)
T 1uu1_A           85 ADEIIYVMMLMF---DRSVFFP-PTYSCYRI--------FAKAVGA--KFLEVPLT-KDLRIPEVNV-----G-EGDVVF  143 (335)
T ss_dssp             HHHHHHHHHHHS---SEEEECS-SSCHHHHH--------HHHHHTC--EEEECCCC-TTSCCCCCCC-----C-TTEEEE
T ss_pred             hHHHHHHHHHHh---CCcEEEC-CCcHHHHH--------HHHHcCC--eEEEeccC-CCCCCCHHHc-----C-CCCEEE
Confidence            5 8888888887   9999998 88766431        2233444  55566665 3467888876     3 789999


Q ss_pred             EcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCC-CCCcccEEEeCCCcccC--CCCCceEEeecCCc
Q 013217          175 AGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD-PFKYCDVVTTTTHKSLR--GPRGGMIFFKKDPV  249 (447)
Q Consensus       175 ~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~-~~~~~Di~~~s~~K~l~--Gp~gG~i~~~~~~~  249 (447)
                      ++.++||+  ..+.+++.++++..| ++++|++|+.. ........ .....+++++|+||+++  |.|.|++++++   
T Consensus       144 l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~---  218 (335)
T 1uu1_A          144 IPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEF-HGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASE---  218 (335)
T ss_dssp             EESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHH-HCCCCGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEECH---
T ss_pred             EeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhh-cchhHHHHhhhCCCEEEEecchhhcCCcccCeEEEEeCH---
Confidence            88778775  789999999999889 99999998532 21111110 00135789999999973  66779999977   


Q ss_pred             chhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecC
Q 013217          250 LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDL  329 (447)
Q Consensus       250 ~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~  329 (447)
                         ++.+.+.....+   .+++....+++..+++..  ..+++..+++.++++++.+.|.+.|+++..+  ...++++++
T Consensus       219 ---~~~~~l~~~~~~---~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~~~~~~~~~  288 (335)
T 1uu1_A          219 ---KFIDAYNRVRLP---FNVSYVSQMFAKVALDHR--EIFEERTKFIVEERERMKSALREMGYRITDS--RGNFVFVFM  288 (335)
T ss_dssp             ---HHHHHHHHHSCT---TCSCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC--CSSEEEEEC
T ss_pred             ---HHHHHHHHhcCC---CCcCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHCCcEEcCC--CCeEEEEEC
Confidence               777777654333   245555555555566541  2457778888999999999998878765432  344567776


Q ss_pred             CCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          330 RPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       330 ~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                      ..  .+..++.+.|.++||.++.          ..+.+|+++.   +    ++|++++.+.|+++
T Consensus       289 ~~--~~~~~~~~~l~~~gi~v~~----------~~~~iRis~~---~----~~~i~~~~~~l~~~  334 (335)
T 1uu1_A          289 EK--EEKERLLEHLRTKNVAVRS----------FREGVRITIG---K----REENDMILRELEVF  334 (335)
T ss_dssp             CT--HHHHHHHHHHHHHTEEEEE----------ETTEEEEECC---C----HHHHHHHHHHHHCC
T ss_pred             CC--CCHHHHHHHHHHCCEEEEE----------CCCeEEEEeC---C----HHHHHHHHHHHHhh
Confidence            43  3566788888889999964          1358999963   3    67899988888653

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.90  E-value=5.6e-22  Score=197.59  Aligned_cols=289  Identities=16%  Similarity=0.088  Sum_probs=187.7

Q ss_pred             hhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccc
Q 013217           61 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI  140 (447)
Q Consensus        61 ~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~  140 (447)
                      ++...+++    +++++++|.+.     .+.++||++|+..++.+++++||+|++.++.|++.+....    ..+...|.
T Consensus       113 ~~~~~~l~----~~lA~l~g~~~-----~v~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~----~~~~~~G~  179 (445)
T 1qgn_A          113 NPTTVVLE----EKISALEGAES-----TLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIE----TILPKMGI  179 (445)
T ss_dssp             CHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHH----HTGGGGTC
T ss_pred             ChHHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHH----HHHHHcCC
Confidence            34455555    68889999862     3556999999999999999999999999988877532100    01223343


Q ss_pred             eeEEEecccCCCCCCCCHHHHHHHhhhhCC-cEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCC
Q 013217          141 YFESMPYRLDESTGLVDYDMLEKTAILFRP-KLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  217 (447)
Q Consensus       141 ~~~~~~~~~~~~~~~id~~~l~~~~~~~~~-klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~  217 (447)
                        +++.++.+      |++++++++++ +| ++|++++++||+  ..|+++|.++|+++|+++++|++|+.+...     
T Consensus       180 --~v~~v~~~------d~~~l~~ai~~-~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~-----  245 (445)
T 1qgn_A          180 --TATVIDPA------DVGALELALNQ-KKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQ-----  245 (445)
T ss_dssp             --EEEEECSS------CHHHHHHHHHH-SCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC-----
T ss_pred             --EEEEeCCC------CHHHHHHHhcc-CCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccC-----
Confidence              44454332      89999999987 88 999999888775  789999999999999999999998766431     


Q ss_pred             CCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHH
Q 013217          218 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY  293 (447)
Q Consensus       218 ~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~  293 (447)
                      .++. ++|++++|+||+++|+.   +|++++++      ++.+.+...... ..++++......   +++.+.  .+..+
T Consensus       246 ~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~------~l~~~l~~~~~~-~g~~~~~~~a~~---~~~~l~--~l~~r  313 (445)
T 1qgn_A          246 KALALGADLVLHSATKFLGGHNDVLAGCISGPL------KLVSEIRNLHHI-LGGALNPNAAYL---IIRGMK--TLHLR  313 (445)
T ss_dssp             CTTTTTCSEEEECTTTTTTCSSSCCCEEEEECH------HHHHHHHHHHHH-HCCCCCHHHHHH---HHHHGG--GHHHH
T ss_pred             CccccCCEEEEECCcccccccccceEEEEEECH------HHHHHHHHHHHH-hCCCCCHHHHHH---HHHhHH--HHHHH
Confidence            2333 58999999999998775   79999987      666665432211 112233332211   222222  34566


Q ss_pred             HHHHHHHHHHHHHHHHHC-Cc-EeeeCCC---------------CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCC
Q 013217          294 QNKVVSNCRALASRLVEL-GY-KLVSGGS---------------DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVP  356 (447)
Q Consensus       294 ~~~~~~~~~~l~~~L~~~-g~-~~~~~~~---------------~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p  356 (447)
                      ++++.++++.+.+.|++. ++ .+..++.               ...++.+.+.........+.+.|+..+|.++.+...
T Consensus       314 ~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~l~~~~i~~s~G~~~  393 (445)
T 1qgn_A          314 VQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCE  393 (445)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCSSS
T ss_pred             HHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHhCCCceEeccCCCCc
Confidence            788888999999999884 55 3433311               233445555421001223333443346665543211


Q ss_pred             C------C------------CCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          357 G------D------------KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       357 ~------~------------~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      .      .            .....++.||+|++        .||++.+.+.|++++.
T Consensus       394 sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG--------~Edid~li~~L~~al~  443 (445)
T 1qgn_A          394 SIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG--------VEDFDDLKADILQALD  443 (445)
T ss_dssp             CEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC--------SSCHHHHHHHHHHHHH
T ss_pred             eeeecccccccccCCHHHHHhcCCCCCeEEEEec--------cCCHHHHHHHHHHHHh
Confidence            0      0            01122468999976        4689999999988775

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.90  E-value=3e-21  Score=191.57  Aligned_cols=290  Identities=17%  Similarity=0.174  Sum_probs=187.6

Q ss_pred             hHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccce
Q 013217           62 EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY  141 (447)
Q Consensus        62 ~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~  141 (447)
                      +...+++    +++++++|.+.     .+.++||++|+..++.+++++||+|++..+.|++.+....    ..+...|. 
T Consensus        56 ~~~~~l~----~~la~~~g~~~-----~~~~~~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~----~~~~~~g~-  121 (412)
T 2cb1_A           56 PTAKALE----ERLKALEGALE-----AVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFG----QVLSLMGV-  121 (412)
T ss_dssp             HHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHH----HTTTTTTC-
T ss_pred             hHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHH----HHHHHcCC-
Confidence            3444554    68889999862     2445788899999999999999999999998876532110    00122343 


Q ss_pred             eEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCC
Q 013217          142 FESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADP  219 (447)
Q Consensus       142 ~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~  219 (447)
                       +++.++.       |+++|++++++ +|++|+++.++|++  ..|+++|.++|+++|+++++|++|+.+...    ..+
T Consensus       122 -~~~~~~~-------~~~~l~~~i~~-~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~----~~~  188 (412)
T 2cb1_A          122 -TVRYVDP-------EPEAVREALSA-KTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGAL----CRP  188 (412)
T ss_dssp             -EEEEECS-------SHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTS----CCG
T ss_pred             -EEEEECC-------CHHHHHHHhcc-CCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccccc----CCc
Confidence             4445432       48999999987 89999998777764  789999999999999999999999765111    112


Q ss_pred             CC-cccEEEeCCCcccCCCCC--ceEEeecCCcc------h----------------hhHHHHhhhccCCCCCC-CCcHH
Q 013217          220 FK-YCDVVTTTTHKSLRGPRG--GMIFFKKDPVL------G----------------VELESAINNAVFPGLQG-GPHNH  273 (447)
Q Consensus       220 ~~-~~Di~~~s~~K~l~Gp~g--G~i~~~~~~~~------~----------------~~~~~~i~~~~~~~~~g-~p~~~  273 (447)
                      .. ++|++++|+||+++||.+  |++++.++...      .                .++.+.+....... .| ..+..
T Consensus       189 ~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~-~g~~~~~~  267 (412)
T 2cb1_A          189 LAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSL-CGMALSPF  267 (412)
T ss_dssp             GGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHTTT-TCCCCCHH
T ss_pred             cccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHHHh-cCCCCChH
Confidence            22 489999999999987654  66555442100      0                02233333321111 12 12221


Q ss_pred             HHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEeee-CCC---------------CCeeEEecCCCCCCCH
Q 013217          274 TIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVS-GGS---------------DNHLVLVDLRPMGIDG  336 (447)
Q Consensus       274 ~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~-~~~---------------~~~~~~v~~~~~~~~~  336 (447)
                      . +  +.++..+  ..+.++.++..++++++.+.|.+ .++..+. ++.               ...++.+.+   + +.
T Consensus       268 ~-a--~~~~~~l--~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~---~-~~  338 (412)
T 2cb1_A          268 N-A--YLLFQGL--ETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL---G-DL  338 (412)
T ss_dssp             H-H--HHHHHHG--GGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC---S-SH
T ss_pred             H-h--HHHHcCC--chHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe---C-CH
Confidence            1 1  1122222  23456677788899999999988 4777442 221               122344444   3 67


Q ss_pred             HHHHHHHhhcCeEEccCC---------CCCCCC------------CCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217          337 ARVEKILDMASITLNKNS---------VPGDKS------------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       337 ~~~~~~L~~~gI~v~~~~---------~p~~~~------------~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~  393 (447)
                      +.+.+.|++.||.+ ..+         .|....            ...++.||++++..++    +++++.+.++|++
T Consensus       339 ~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~----~~~i~~l~~al~~  411 (412)
T 2cb1_A          339 ERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDP----LDLLALFEEALEA  411 (412)
T ss_dssp             HHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCH----HHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCH----HHHHHHHHHHHhh
Confidence            88899999999998 542         221110            0115789999999988    9999999988864

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=99.83  E-value=2.7e-25  Score=219.21  Aligned_cols=336  Identities=14%  Similarity=0.118  Sum_probs=216.6

Q ss_pred             cCeeEecCCC--CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC--CCCCccceeeecCCcH
Q 013217           21 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLSGS   96 (447)
Q Consensus        21 ~~i~l~~~~n--~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g--~~~~~~~~~v~~~sGs   96 (447)
                      ..++|..+++  ..++.+.+++.+.+.+. ..+|+..        ..++++...+++.+.+|  .+++    +|.+++|+
T Consensus        32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~--------~~~l~~~la~~l~~~~g~~~~~~----~v~~~~g~   98 (392)
T 3b1d_A           32 QLLPAWIADMDFEVMPEVKQAIHDYAEQL-VYGYTYA--------SDELLQAVLDWEKSEHQYSFDKE----DIVFVEGV   98 (392)
Confidence            4567766655  34688889888766431 1233221        33555555567777777  4444    23346664


Q ss_pred             -HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC--CCCCCHHHHHHHhhhhCCcEE
Q 013217           97 -PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES--TGLVDYDMLEKTAILFRPKLI  173 (447)
Q Consensus        97 -~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~id~~~l~~~~~~~~~kli  173 (447)
                       +|+.+++.+++++||+|++..|.|.++..        .+...|.  +++.++++++  ++.+|++++++++++.++++|
T Consensus        99 ~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v  168 (392)
T 3b1d_A           99 VPAISIAIQAFTKEGEAVLINSPVYPPFAR--------SVRLNNR--KLVSNSLKEENGLFQIDFEQLENDIVENDVKLY  168 (392)
Confidence             89999999999999999999988876532        2233343  4445555322  356899999999874478998


Q ss_pred             EEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCC-------CcccEEEeCCCccc--CCCCC
Q 013217          174 IAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-------KYCDVVTTTTHKSL--RGPRG  239 (447)
Q Consensus       174 i~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~-------~~~Di~~~s~~K~l--~Gp~g  239 (447)
                      +++.++||+  ..   ++++|.++|+++|+++|+|++|.. +...+....++       ...++++.|++|++  +|.|.
T Consensus       169 ~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~  247 (392)
T 3b1d_A          169 LLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQD-LTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKN  247 (392)
Confidence            888777775  33   489999999999999999999753 33322111111       12458889999997  57788


Q ss_pred             ceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-C-CcEeee
Q 013217          240 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-L-GYKLVS  317 (447)
Q Consensus       240 G~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~  317 (447)
                      |+++++++     ++.+.+.....+...++++....++...+++.. ...+++..+++.++++.+.+.|++ . |+.+..
T Consensus       248 G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  321 (392)
T 3b1d_A          248 SYAIIENP-----TLCAQFKHQQLVNNHHEVSSLGYIATETAYRYG-KPWLVALKAVLEENIQFAVEYFAQEAPRLKVMK  321 (392)
Confidence            99998763     466666554333322344444444444455532 233566777888888888888876 3 776654


Q ss_pred             CCCCCeeEEecCCCCCCCHHHHHHHHh-hcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          318 GGSDNHLVLVDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       318 ~~~~~~~~~v~~~~~~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      + ..+++.|+++...+.+..++.+.|. ++||.+..+..++   +..++.+|+++..  +    ++++++.++.|.++++
T Consensus       322 ~-~~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~---~~~~~~iRi~~~~--~----~e~i~~~l~~l~~~l~  391 (392)
T 3b1d_A          322 P-QGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYG---SEGELHARLNIAA--P----KSLVEEICKRIVCCLP  391 (392)
Confidence            3 3355556777543345667777774 8899996542221   1124579998542  3    6888888888877654

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.89  E-value=5.2e-22  Score=196.23  Aligned_cols=331  Identities=14%  Similarity=0.140  Sum_probs=198.9

Q ss_pred             hcCeeEecCCC--CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHH--cC-CCCCccceeeecCC
Q 013217           20 FKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA--FN-LDENKWGVNVQPLS   94 (447)
Q Consensus        20 ~~~i~l~~~~n--~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~--~g-~~~~~~~~~v~~~s   94 (447)
                      +..|+|..+++  ..+|.+++++...+..... . .+...|+......+++    +.++++  +| ++++.    |.+++
T Consensus        33 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~-~-~~~~~y~~~~g~~~lr----~~la~~l~~g~~~~~~----v~~~~  102 (400)
T 3asa_A           33 HTVINLSIGDTTQPLNASVAEAFASSIARLSS-P-TTCRGYGPDFGLPALR----QKLSEDFYRGFVDAKE----IFISD  102 (400)
T ss_dssp             SCCEECSSCCCCCCCCHHHHHHHHHHHHHHTS-S-SCCCCCCCTTCCHHHH----HHHHHTTSTTSSCGGG----EEEES
T ss_pred             CceEeccCCCCCCCCCHHHHHHHHHHHhcccc-c-ccccCCCCCCCCHHHH----HHHHHHHHcCCCCHHH----EEEcc
Confidence            35678877766  3578999998877654210 0 0011121111123444    456666  57 55543    33467


Q ss_pred             cH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-CCCCCHHHHHHHhhhhCCcE
Q 013217           95 GS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKL  172 (447)
Q Consensus        95 Gs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~~~~~~~kl  172 (447)
                      |+ +++..+ ..+++|||+|++.+|.|.++..        .+...|.. .++.++++++ ....|+++    .  .++++
T Consensus       103 G~~~al~~~-~~~~~~gd~Vl~~~p~y~~~~~--------~~~~~g~~-~~~~~~~~~~~~~~~~l~~----~--~~~~~  166 (400)
T 3asa_A          103 GAKVDLFRL-LSFFGPNQTVAIQDPSYPAYLD--------IARLTGAK-EIIALPCLQENAFFPEFPE----D--THIDI  166 (400)
T ss_dssp             CHHHHHHHH-HHHHCSSCEEEEEESCCHHHHH--------HHHHTTCS-EEEEEECCGGGTTCCCCCT----T--CCCSE
T ss_pred             ChHHHHHHH-HHHcCCCCEEEECCCCcHHHHH--------HHHHcCCc-ceEecccchhcCcccChhh----c--cCccE
Confidence            66 777764 4567899999999998876531        22334543 0444445422 22344322    1  37899


Q ss_pred             EEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC---C---cccEEEeCCCccc--CCCCC
Q 013217          173 IIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K---YCDVVTTTTHKSL--RGPRG  239 (447)
Q Consensus       173 ii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~---~---~~Di~~~s~~K~l--~Gp~g  239 (447)
                      |+++.++||+  ..+   +++|.++|+++|+++|+|++|. ++...+..+.++   +   ..+++++|+||++  +|.|.
T Consensus       167 v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~Glri  245 (400)
T 3asa_A          167 LCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYS-TFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRL  245 (400)
T ss_dssp             EEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTG-GGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCC
T ss_pred             EEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhh-hhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcchhe
Confidence            9998778875  555   5678899999999999999975 332222111111   1   1348899999997  46777


Q ss_pred             ceEEeecCCcchhhH-------HHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCC
Q 013217          240 GMIFFKKDPVLGVEL-------ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG  312 (447)
Q Consensus       240 G~i~~~~~~~~~~~~-------~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  312 (447)
                      |+++++++      +       .+.+.........++++....+++..+++..   +.++..+++.++++.+.+.|.+.|
T Consensus       246 G~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~l~~~L~~~g  316 (400)
T 3asa_A          246 GWTVIPQE------LTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSIL---PQLEAIHYYRENSDLLRKALLATG  316 (400)
T ss_dssp             EEEECCTT------CBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             eEEeeChh------hccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcH---HHHHHHHHHHHHHHHHHHHHHHCC
Confidence            99999874      3       2322211001112344555555555566653   345667888899999999999889


Q ss_pred             cEeeeCCCCCeeEEec-CCCCCCCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHH
Q 013217          313 YKLVSGGSDNHLVLVD-LRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADF  390 (447)
Q Consensus       313 ~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~  390 (447)
                      +++..+ ....++|++ +. .+.+..++.+.| +++||.+..+...+   +...+.+|++.  .++    +++++++++.
T Consensus       317 ~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~l~~~~gv~v~~g~~f~---~~~~~~iRis~--~~~----~e~i~~~l~~  385 (400)
T 3asa_A          317 FEVFGG-EHAPYLWVKPTQ-ANISDRDLFDFFLREYHIAITPGIGFG---RSGSGFVRFSS--LGK----REDILAACER  385 (400)
T ss_dssp             CEEEEC-SSSSEEEEECCC-TTCCTTTHHHHHHHHHSEECEEGGGGC---GGGTTCEEEEC--CSC----HHHHHHHHHH
T ss_pred             CeeeCC-CCceEEEEeccC-CCCCHHHHHHHHHHhCCEEEeChhHhC---CCCCCEEEEEe--eCC----HHHHHHHHHH
Confidence            887654 235567888 54 244555566555 56799987542221   11245799983  445    8999999999


Q ss_pred             HHHHHHH
Q 013217          391 IHEGVEI  397 (447)
Q Consensus       391 i~~~l~~  397 (447)
                      |++++..
T Consensus       386 l~~~~~~  392 (400)
T 3asa_A          386 LQMAPAL  392 (400)
T ss_dssp             HHC----
T ss_pred             HHHHHHh
Confidence            9887764

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.89  E-value=1.2e-21  Score=190.01  Aligned_cols=313  Identities=13%  Similarity=0.112  Sum_probs=210.2

Q ss_pred             hcCeeEecCCCCC--CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-
Q 013217           20 FKSLELIASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-   96 (447)
Q Consensus        20 ~~~i~l~~~~n~~--~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-   96 (447)
                      +..|+|..++|+.  ++.+++++...+..  ..+|+...      . .++    ++++++++|++++.    |.+++|+ 
T Consensus        15 ~~~id~~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~~~------~-~~l----r~~la~~~~~~~~~----i~~t~g~~   77 (350)
T 3fkd_A           15 SEIVNFSTTVWTDGDKDHLEKHLVENLNC--IRHYPEPD------A-GTL----RQMLAKRNSVDNNA----ILVTNGPT   77 (350)
T ss_dssp             -CCEECSCCSCCCSCCHHHHHHHHHTGGG--GGSCCCTT------C-HHH----HHHHHHHTTCCGGG----EEEESHHH
T ss_pred             ccEEEccCCCCCCCCCHHHHHHHHHhHhH--HhcCCCCc------H-HHH----HHHHHHHhCcCHHH----EEEcCCHH
Confidence            5678888887754  78999999887733  23454431      1 234    36788899988753    3346665 


Q ss_pred             HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEeccc-CCCCCCCCHHHHHHHhhhhCCcEEEE
Q 013217           97 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-DESTGLVDYDMLEKTAILFRPKLIIA  175 (447)
Q Consensus        97 ~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~id~~~l~~~~~~~~~klii~  175 (447)
                      +++..++.++.  ||+|++..|.|.++..        .+...|.  +++.+++ ++ .+.+++        + ++++|++
T Consensus        78 ~al~~~~~~l~--gd~Vi~~~p~~~~~~~--------~~~~~g~--~~~~v~~~~~-~~~~~~--------~-~~~~v~i  135 (350)
T 3fkd_A           78 AAFYQIAQAFR--GSRSLIAIPSFAEYED--------ACRMYEH--EVCFYPSNED-IGEADF--------S-NMDFCWL  135 (350)
T ss_dssp             HHHHHHHHHTT--TCEEEEEESCCHHHHH--------HHHHTTC--EEEEEETTSC-GGGSCC--------T-TCSEEEE
T ss_pred             HHHHHHHHHHC--CCEEEEeCCCcHHHHH--------HHHHcCC--eEEEEecCCc-cccCcc--------C-CCCEEEE
Confidence            89998888887  9999999988766531        2334454  5555556 42 233444        3 7999999


Q ss_pred             cCCCCCC--CCChHHHHHHHHHhC-CEEEEehhhhccccccccCC-CCCC--cccEEEeCCCcccC--CCCCceEEeecC
Q 013217          176 GASAYPR--DFDYPRMRQIADAVG-ALLMMDMAHISGLVAASVVA-DPFK--YCDVVTTTTHKSLR--GPRGGMIFFKKD  247 (447)
Q Consensus       176 ~~~~~~~--~~~~~~i~~ia~~~g-~~livD~a~~~g~~~~~~~~-~~~~--~~Di~~~s~~K~l~--Gp~gG~i~~~~~  247 (447)
                      +.++||+  ..+.+++.++++.++ .++++|++|. ++...+... ..++  ..+++++|+||+++  |.|.|++++++ 
T Consensus       136 ~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~-~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~-  213 (350)
T 3fkd_A          136 CNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYV-SFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVANK-  213 (350)
T ss_dssp             ESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTT-TSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEEECCH-
T ss_pred             eCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchh-hhccCcchhhHHhhcCCCEEEEecCchhccCcchheEeEEeCH-
Confidence            8888875  789999999999886 7999999974 333322111 1111  24588999999874  67789999976 


Q ss_pred             CcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCCCCeeEE
Q 013217          248 PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLVL  326 (447)
Q Consensus       248 ~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~  326 (447)
                           ++.+.+.....+   .+++....+++..+++...  .+.+..++..++++.+.+.|++. |+++..+  ...+++
T Consensus       214 -----~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~~~~~~  281 (350)
T 3fkd_A          214 -----DFMKRVAAFSTP---WAVNALAIEAAKFILIHPA--QFTLPIRKWQRNTVDFITALNRLDGVEVHPS--GTTFFL  281 (350)
T ss_dssp             -----HHHHHHHTTCCT---TCSCHHHHHHHHHHHHCTT--TTCCCHHHHHHHHHHHHHHHHHSTTEEECCC--SSSEEE
T ss_pred             -----HHHHHHHHhCCC---CCCCHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHHHHHHhcCCCcEECCC--CCcEEE
Confidence                 787777665432   2445555555555665432  13233444558889999999885 8887543  344556


Q ss_pred             ecCCCCCCCHHHHHHHHhh-cCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          327 VDLRPMGIDGARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       327 v~~~~~~~~~~~~~~~L~~-~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      +.+...  +..++.+.|.+ +||.++.+...+   +...+.+|+++.   +    ++|++++.++|++++..
T Consensus       282 ~~~~~~--~~~~l~~~L~~~~gi~v~~g~~f~---~~~~~~iRis~~---~----~~~~~~l~~al~~~~~~  341 (350)
T 3fkd_A          282 LRLKKG--TAAELKKYMLEEYNMLIRDASNFR---GLDESYVRITTQ---R----PAQNQLFIKALETFLEK  341 (350)
T ss_dssp             EEESSS--CHHHHHHHHHHTTCEECEECTTST---TCCTTEEEEECC---C----HHHHHHHHHHHHHHHTC
T ss_pred             EECCCC--CHHHHHHHHHHHCCEEEEeCccCC---CCCCCEEEEEcC---C----HHHHHHHHHHHHHHHHH
Confidence            666532  67888888877 999997543221   223568999864   3    88999999999888764

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.89  E-value=1.5e-22  Score=200.41  Aligned_cols=289  Identities=13%  Similarity=0.066  Sum_probs=186.4

Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217           60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  139 (447)
Q Consensus        60 g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g  139 (447)
                      +++..+++|    +++++++|.+.     .+.++||++|+.+++.++++|||+|++.++.|++.+....    ..+...|
T Consensus        80 ~~p~~~~le----~~lA~l~g~~~-----~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~----~~l~~~G  146 (415)
T 2fq6_A           80 GTLTHFSLQ----QAMCELEGGAG-----CVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCS----KILSKLG  146 (415)
T ss_dssp             CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHH----HTGGGGT
T ss_pred             CCchHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHH----HHHHHcC
Confidence            445566666    57889999863     2445899999999999999999999999998877642110    0112234


Q ss_pred             ceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHH--hCCEEEEehhhhcccccccc
Q 013217          140 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADA--VGALLMMDMAHISGLVAASV  215 (447)
Q Consensus       140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~--~g~~livD~a~~~g~~~~~~  215 (447)
                      .  ++..++.      .|++++++++++ +|++|++..++||+  ..|+++|+++|++  +|+++++|++|+.+..    
T Consensus       147 ~--~v~~v~~------~d~~~le~ai~~-~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~----  213 (415)
T 2fq6_A          147 V--TTSWFDP------LIGADIVKHLQP-NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVL----  213 (415)
T ss_dssp             C--EEEEECT------TCGGGGGGGCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTS----
T ss_pred             c--EEEEECC------CCHHHHHHhhcc-CCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCccccc----
Confidence            3  4444332      278999999987 89999998877775  7899999999999  9999999999876532    


Q ss_pred             CCCCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccC-CCCCCCCcHHHHHHHHHHHHHhcChhH
Q 013217          216 VADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVF-PGLQGGPHNHTIGGLAVCLKHAQSPEF  290 (447)
Q Consensus       216 ~~~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~-~~~~g~p~~~~~aal~~al~~~~~~~~  290 (447)
                       ..|+. ++|++++|+||+++|+.   +|++++++      ++.+.+..... .+  +.+.......+..+++     .+
T Consensus       214 -~~p~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~------~~~~~l~~~~~~~G--~~~~~~~a~~~~~~l~-----~l  279 (415)
T 2fq6_A          214 -FKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNA------RCWEQLRENAYLMG--QMVDADTAYITSRGLR-----TL  279 (415)
T ss_dssp             -SCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECT------TTHHHHHHHHHHTT--CCCCHHHHHHHHHHHH-----HH
T ss_pred             -CCccccCCeEEEEeCccccCCCCCceEEEEEeCH------HHHHHHHHHHHhcC--CCCCHHHHHHHHhhhh-----HH
Confidence             12333 58999999999997764   68998887      44454443211 11  1222221111112222     34


Q ss_pred             HHHHHHHHHHHHHHHHHHHHC-CcE-eeeCC---------------CCCeeEEecCCCCCCCHHHHHHHHhh---cCeEE
Q 013217          291 KVYQNKVVSNCRALASRLVEL-GYK-LVSGG---------------SDNHLVLVDLRPMGIDGARVEKILDM---ASITL  350 (447)
Q Consensus       291 ~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~---------------~~~~~~~v~~~~~~~~~~~~~~~L~~---~gI~v  350 (447)
                      ..+.++..+|+..+++.|++. .+. +..++               ....++.+.+.. +.+..+...++..   .+|.+
T Consensus       280 ~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g-~~~~~~~~~~l~~l~~~~~a~  358 (415)
T 2fq6_A          280 GVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKK-KLNNEELANYLDNFSLFSMAY  358 (415)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESS-CCCHHHHHHHHTTCSSCEECS
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC-CCCHHHHHHHHHhCCcCeEec
Confidence            566788889999999999874 333 21221               023344555542 1123445555544   44555


Q ss_pred             ccCC------C--CC---C-----CCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217          351 NKNS------V--PG---D-----KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       351 ~~~~------~--p~---~-----~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~  393 (447)
                      +.+.      .  |.   +     .-....+.||+|+...++    +++++.+.++|++
T Consensus       359 s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~----~d~i~~l~~al~~  413 (415)
T 2fq6_A          359 SWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDV----DDLIADLDAGFAR  413 (415)
T ss_dssp             CCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCH----HHHHHHHHHHHHT
T ss_pred             cCCCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCH----HHHHHHHHHHHHh
Confidence            5431      1  21   1     011224689999998888    8999888888764

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.89  E-value=1.7e-21  Score=190.51  Aligned_cols=303  Identities=17%  Similarity=0.150  Sum_probs=195.0

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHH---hc-
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA---IL-  107 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~a---l~-  107 (447)
                      .++.+++++...+.+.   +.+..+| . .....++    ++++++++|++ +.   .+.+++|++|+..++.+   +. 
T Consensus        45 ~~~~v~~a~~~~~~~~---~~~~~~y-~-~~~~~~l----~~~la~~~g~~-~~---v~~~~g~t~a~~~~~~~~~~~~~  111 (375)
T 2eh6_A           45 AYPKLTEALKEQVEKL---LHVSNLY-E-NPWQEEL----AHKLVKHFWTE-GK---VFFANSGTESVEAAIKLARKYWR  111 (375)
T ss_dssp             SCHHHHHHHHHHHHHC---SCCCTTB-C-CHHHHHH----HHHHHHTSSSC-EE---EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhc---cccCccc-C-CHHHHHH----HHHHHhhcCCC-Ce---EEEeCchHHHHHHHHHHHHHHhc
Confidence            6899999998877542   2222233 2 2223334    46888899983 32   23345566999888764   35 


Q ss_pred             --CCC-CEEEEecCCCCcccCCCccccccccccccce-----eE-----EEecccCCCCCCCCHHHHHHHhhhhCCcEEE
Q 013217          108 --KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----FE-----SMPYRLDESTGLVDYDMLEKTAILFRPKLII  174 (447)
Q Consensus       108 --~pg-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~-----~~-----~~~~~~~~~~~~id~~~l~~~~~~~~~klii  174 (447)
                        +|| |+|++.++.|.+.....       ....+..     +.     +..++      ..|+++|++++++ ++++|+
T Consensus       112 ~~~~g~~~vl~~~~~y~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~l~~-~~~~v~  177 (375)
T 2eh6_A          112 DKGKNKWKFISFENSFHGRTYGS-------LSATGQPKFHKGFEPLVPGFSYAK------LNDIDSVYKLLDE-ETAGII  177 (375)
T ss_dssp             HTTCCCCEEEEEBTCCCCSSHHH-------HHHCBCGGGTTTTCSCCSSEEEEC------TTCHHHHHTTCCT-TEEEEE
T ss_pred             cCCCCCCEEEEECCCcCCCchhh-------hhhcCCccccCCCCCCCCCceeCC------CchHHHHHHHhcC-CeEEEE
Confidence              789 99999998876542110       0111110     00     11111      1589999998876 899999


Q ss_pred             EcCCCCCC--CCC----hHHHHHHHHHhCCEEEEehhhhcccccccc-CC-CCCC-cccEEEeCCCcccCC-CCCceEEe
Q 013217          175 AGASAYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASV-VA-DPFK-YCDVVTTTTHKSLRG-PRGGMIFF  244 (447)
Q Consensus       175 ~~~~~~~~--~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~-~~~~-~~Di~~~s~~K~l~G-p~gG~i~~  244 (447)
                      ++++++++  ..+    +++|.++|+++|+++++|++|+ ++...+. .. ..++ ..|++++|  |++++ .+.|++++
T Consensus       178 ~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~d~~s~S--K~~~~g~~~G~~~~  254 (375)
T 2eh6_A          178 IEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQT-GIGRTGEFYAYQHFNLKPDVIALA--KGLGGGVPIGAILA  254 (375)
T ss_dssp             ECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSCCEEEEE
T ss_pred             EeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEecccc-CCCCCCcchhhhhcCCCCCEEEEc--ccccCCCCeEEEEE
Confidence            98777764  447    9999999999999999999986 3322221 00 0111 26888666  98864 45599999


Q ss_pred             ecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCee
Q 013217          245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHL  324 (447)
Q Consensus       245 ~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~  324 (447)
                      ++      ++.+.+.........+++ ....++...+++...     ++.+++.++++++.+.|++.+.....+  ...+
T Consensus       255 ~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~-----~~~~~~~~~~~~l~~~L~~~~~~~~~~--~g~~  320 (375)
T 2eh6_A          255 RE------EVAQSFTPGSHGSTFGGN-PLACRAGTVVVDEVE-----KLLPHVREVGNYFKEKLKELGKGKVKG--RGLM  320 (375)
T ss_dssp             EH------HHHTTCCTTSCCCSSTTC-HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTTSSEEEE--ETTE
T ss_pred             cH------HHHhhhcCCCCCCCCCCC-HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCceE--EEEE
Confidence            87      676666553222233443 333333344555432     567788888999999998866433332  2456


Q ss_pred             EEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          325 VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       325 ~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                      +++++..   +..++.+.|.++||.+...         .++.+|++++..++    ++|++++++.|+++
T Consensus       321 ~~~~~~~---~~~~~~~~l~~~gi~~~~~---------~~~~iRi~~~~~~~----~~~i~~~~~~l~~~  374 (375)
T 2eh6_A          321 LGLELER---ECKDYVLKALEKGLLINCT---------AGKVLRFLPPLIIQ----KEHIDRAISVLREI  374 (375)
T ss_dssp             EEEECSS---CCHHHHHHHHHTTEECEEE---------TTTEEEECCCTTCC----HHHHHHHHHHHHHH
T ss_pred             EEEEEcC---cHHHHHHHHHHCCCEEecC---------CCCEEEEECCCCCC----HHHHHHHHHHHHHh
Confidence            6777753   3567888888899998532         14589999886666    99999999998765

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.89  E-value=4.1e-22  Score=200.99  Aligned_cols=327  Identities=18%  Similarity=0.208  Sum_probs=198.9

Q ss_pred             HHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcC----C
Q 013217           34 RAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK----P  109 (447)
Q Consensus        34 ~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~----p  109 (447)
                      +++.+++...+.... .      .|+......+++    +++++++|.+.     .+.+++|++|+..++.++++    |
T Consensus        55 ~~v~~a~~~~~~~~~-~------~y~~~~~~~~l~----~~la~~~~~~~-----v~~t~ggt~A~~~al~~~~~~~~~~  118 (467)
T 1ax4_A           55 NAMSDHQWAAMITGD-E------AYAGSRNYYDLK----DKAKELFNYDY-----IIPAHQGRGAENILFPVLLKYKQKE  118 (467)
T ss_dssp             CCEEHHHHHHHHTCC-C------CSSSCHHHHHHH----HHHHHHHCCCE-----EEEESSHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhcc-c------ccccCccHHHHH----HHHHHHcCCCc-----EEEcCCcHHHHHHHHHHHHHhhccC
Confidence            566666655543210 1      123333445554    57888888742     23446678999999999988    9


Q ss_pred             CCE---EEEecCCCCcccCCCccccccccccccceeEEEeccc----CC-----CCCCCCHHHHHHHhhhh---CCcEEE
Q 013217          110 HDR---IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL----DE-----STGLVDYDMLEKTAILF---RPKLII  174 (447)
Q Consensus       110 gd~---Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~-----~~~~id~~~l~~~~~~~---~~klii  174 (447)
                      ||+   |++. ..|.+...       ..+...|.  +++....    +.     .++.+|+++|++++++.   ++++|+
T Consensus       119 Gd~~~~viv~-~~~~~~~~-------~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi  188 (467)
T 1ax4_A          119 GKAKNPVFIS-NFHFDTTA-------AHVELNGC--KAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIV  188 (467)
T ss_dssp             TCCSSCEEEE-SSCCHHHH-------HHHHHTTC--EEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEE
T ss_pred             CCccceEEEe-ccccchhh-------HHHhccCC--ceecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEE
Confidence            998   8887 33321100       11223343  2222211    11     14579999999999753   689999


Q ss_pred             EcCCCCCC---CC---ChHHHHHHHHHhCCEEEEehhhhc-ccc--------ccccCCCCC-----CcccEEEeCCCccc
Q 013217          175 AGASAYPR---DF---DYPRMRQIADAVGALLMMDMAHIS-GLV--------AASVVADPF-----KYCDVVTTTTHKSL  234 (447)
Q Consensus       175 ~~~~~~~~---~~---~~~~i~~ia~~~g~~livD~a~~~-g~~--------~~~~~~~~~-----~~~Di~~~s~~K~l  234 (447)
                      +++++|++   ..   ++++|+++|++||+++|+|++|.. |..        ..+.....+     ..+|++++|+||++
T Consensus       189 ~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~  268 (467)
T 1ax4_A          189 STVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDP  268 (467)
T ss_dssp             EESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTT
T ss_pred             EeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEEeccccC
Confidence            88666553   33   468999999999999999998765 221        111100001     23689999999998


Q ss_pred             CCCCCceEEeecCCcchhhHHHHhhhcc--CCC--CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH
Q 013217          235 RGPRGGMIFFKKDPVLGVELESAINNAV--FPG--LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE  310 (447)
Q Consensus       235 ~Gp~gG~i~~~~~~~~~~~~~~~i~~~~--~~~--~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~  310 (447)
                      +.|.||+++.+++.    ++.+.+....  ..+  ..++.+...+++++.+++....   .+..++..++++.+.+.|.+
T Consensus       269 g~~~Gg~~~~~d~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~  341 (467)
T 1ax4_A          269 LLNIGGLVAIRDNE----EIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE---EEYLHYRIGQVKYLGDRLRE  341 (467)
T ss_dssp             CCSSCEEEEESSCH----HHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcceEEEeCCHH----HHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHh
Confidence            66657888877310    2333332210  011  2234444445555556665443   22344555778899999988


Q ss_pred             CCcEeeeCCCCCeeEEec-------CCCCCCCHHHHHHHH-hhcCeEEcc-CCC-----C--CCCCCCCCCeEEEecCcc
Q 013217          311 LGYKLVSGGSDNHLVLVD-------LRPMGIDGARVEKIL-DMASITLNK-NSV-----P--GDKSALVPGGIRIGSPAM  374 (447)
Q Consensus       311 ~g~~~~~~~~~~~~~~v~-------~~~~~~~~~~~~~~L-~~~gI~v~~-~~~-----p--~~~~~~~~~~iRig~~~~  374 (447)
                      .|+++..+ ...+.+|++       +...+.+..++.+.| .++||.+.. +..     |  +...+...+.+|++++..
T Consensus       342 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~  420 (467)
T 1ax4_A          342 AGIPIQYP-TGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARR  420 (467)
T ss_dssp             TTCCBCSS-CCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTT
T ss_pred             CCCCcccC-CCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccc
Confidence            88876543 345667777       322234567788877 899999875 311     1  100011236899998843


Q ss_pred             -ccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          375 -TTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       375 -~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                       ++    ++|++++++.|+++++..
T Consensus       421 ~~t----~e~i~~~~~~l~~~~~~~  441 (467)
T 1ax4_A          421 VYT----NDHMDYIADALIGLKEKF  441 (467)
T ss_dssp             SSC----HHHHHHHHHHHHTTHHHH
T ss_pred             cCC----HHHHHHHHHHHHHHHHhh
Confidence             44    999999999999988753

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.89  E-value=8e-22  Score=195.06  Aligned_cols=290  Identities=18%  Similarity=0.144  Sum_probs=188.7

Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217           60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  139 (447)
Q Consensus        60 g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g  139 (447)
                      +.+...+++    +++++++|.+.     .+.+++|++|+..++.++++|||+|++.++.|+++.....    ..+...|
T Consensus        60 ~~~~~~~l~----~~ia~~~g~~~-----~i~~~~g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~----~~~~~~g  126 (404)
T 1e5e_A           60 GNPTVSNLE----GKIAFLEKTEA-----CVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFE----HALTKFG  126 (404)
T ss_dssp             CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHH----THHHHTT
T ss_pred             cChHHHHHH----HHHHHHhCCCc-----EEEeCChHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHH----HHHHHcC
Confidence            344445555    67888889862     3446888899999999999999999999999877542110    0123345


Q ss_pred             ceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHH-hCCEEEEehhhhccccccccC
Q 013217          140 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADA-VGALLMMDMAHISGLVAASVV  216 (447)
Q Consensus       140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~-~g~~livD~a~~~g~~~~~~~  216 (447)
                      .  +++.++++      |++++++++++ +|++|++++++||+  ..|+++|.++|++ +|+++++|++|+.+...    
T Consensus       127 ~--~~~~v~~~------d~~~l~~~i~~-~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~----  193 (404)
T 1e5e_A          127 I--QVDFINTA------IPGEVKKHMKP-NTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMIT----  193 (404)
T ss_dssp             C--EEEEECTT------STTHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTC----
T ss_pred             C--EEEEECCC------CHHHHHHhcCC-CCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhC----
Confidence            4  45554442      78999999987 89999998887775  7799999999999 99999999998765421    


Q ss_pred             CCCCC-cccEEEeCCCcccCCC--C-CceEEeecCCcchhhHHH-HhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHH
Q 013217          217 ADPFK-YCDVVTTTTHKSLRGP--R-GGMIFFKKDPVLGVELES-AINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK  291 (447)
Q Consensus       217 ~~~~~-~~Di~~~s~~K~l~Gp--~-gG~i~~~~~~~~~~~~~~-~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~  291 (447)
                       .|+. ++|+++.|+||++++|  | +|++++++      ++.+ .+.........++++.....+...+++     ...
T Consensus       194 -~~~~~~~di~~~S~sK~~~~~g~ri~G~~~~~~------~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~-----~~~  261 (404)
T 1e5e_A          194 -NPVDFGVDVVVHSATKYINGHTDVVAGLICGKA------DLLQQIRMVGIKDITGSVISPHDAWLITRGLS-----TLN  261 (404)
T ss_dssp             -CGGGGTCSEEEEETTTTTTCSSCCCCEEEEECH------HHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHT-----THH
T ss_pred             -CccccCCEEEEEcCccccCCCCCCeEEEEEECH------HHHHHHHHHHHHhCCCCCCCHHHHHHHHHhHh-----HHH
Confidence             1222 4899999999998765  4 49999988      5655 666543322023344433333333333     244


Q ss_pred             HHHHHHHHHHHHHHHHHHHCC-cE-eeeCC---------------CCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCC
Q 013217          292 VYQNKVVSNCRALASRLVELG-YK-LVSGG---------------SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNS  354 (447)
Q Consensus       292 ~~~~~~~~~~~~l~~~L~~~g-~~-~~~~~---------------~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~  354 (447)
                      .+.++..++++.+.+.|++.. +. +..+.               ....++.+++..   ...++.+.|++.||.+....
T Consensus       262 ~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~l~~~~i~~~~~s  338 (404)
T 1e5e_A          262 IRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKS---GFEGAKKLLDNLKLITLAVS  338 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETT---HHHHHHHHHHTCSSSEESSC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCC---CHHHHHHHHHhCCCceeccC
Confidence            567777888888888887743 21 11110               013334446542   13567778888998443211


Q ss_pred             C---------CCCC------------CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          355 V---------PGDK------------SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       355 ~---------p~~~------------~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      .         |...            ....++.+|++++.        +|++++.+.|++++...
T Consensus       339 ~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~--------e~~~~li~~l~~al~~~  395 (404)
T 1e5e_A          339 LGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI--------EDADELIADFKQGLDAL  395 (404)
T ss_dssp             CCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS--------SCHHHHHHHHHHHHHHH
T ss_pred             CCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC--------CCHHHHHHHHHHHHHHH
Confidence            1         1000            01114689999764        57888888888877643

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.89  E-value=8.2e-22  Score=194.75  Aligned_cols=342  Identities=17%  Similarity=0.186  Sum_probs=201.3

Q ss_pred             HHHHHHHHHHHhh-cCeeEecCCC-------CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHc
Q 013217            8 VCEIITKEKERQF-KSLELIASEN-------FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF   79 (447)
Q Consensus         8 ~~~~~~~e~~~~~-~~i~l~~~~n-------~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~   79 (447)
                      +..+...-.+..+ +.|+|..+..       ++.+++.+++...+.+....+|+..   .|   ..++.+.+.+++.+.+
T Consensus        15 i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~---~g---~~~lr~~ia~~~~~~~   88 (401)
T 7aat_A           15 ILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPI---AG---LADFTRASAELALGEN   88 (401)
T ss_dssp             HHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCT---TC---CHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHhhCCCCCceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCC---CC---CHHHHHHHHHHhcCCC
Confidence            4454443322222 3578766552       2235788888776653223344432   12   2344434444555444


Q ss_pred             CCC--CCccceeeecCCcHHHHHHHHHHh---cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC-CCC
Q 013217           80 NLD--ENKWGVNVQPLSGSPANFEVYTAI---LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-EST  153 (447)
Q Consensus        80 g~~--~~~~~~~v~~~sGs~a~~~~~~al---~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~  153 (447)
                      |..  ++++ +.+++++|++|+..++.++   ++|||+|++.+|.|.++..        .+...|.  +++.++++ +++
T Consensus        89 ~~~~~~~~i-~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~~  157 (401)
T 7aat_A           89 SEAFKSGRY-VTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTP--------IFRDAGL--QLQAYRYYDPKT  157 (401)
T ss_dssp             CHHHHTTCE-EEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECEETTT
T ss_pred             ccccccCce-EEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHH--------HHHHcCC--eeEeeeeecccc
Confidence            432  4433 1122344458988777665   4999999999998877642        2344554  44555553 246


Q ss_pred             CCCCHHHHHHHhhh--hCCcEEEEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccC--CCC-----
Q 013217          154 GLVDYDMLEKTAIL--FRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVV--ADP-----  219 (447)
Q Consensus       154 ~~id~~~l~~~~~~--~~~klii~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~--~~~-----  219 (447)
                      +.+|++++++.+++  .++++|+++.++||+  ..   ++++|.++|+++|+++++|++|. ++...+..  ..+     
T Consensus       158 ~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~-~~~~~~~~~~~~~~~~~~  236 (401)
T 7aat_A          158 CSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQ-GFASGDINRDAWALRHFI  236 (401)
T ss_dssp             TEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT-TTTTSCHHHHTHHHHHHH
T ss_pred             CccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccc-cccCCCccccHHHHHHHH
Confidence            78999988877754  267888888888886  34   46788999999999999999963 33322210  000     


Q ss_pred             -CCcccEEEeCCCccc--CCCCCceEEeecCCcchhh----HHHHhhhccCCCCCCCCcHHHHHHHHHHHHHh--c---C
Q 013217          220 -FKYCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHA--Q---S  287 (447)
Q Consensus       220 -~~~~Di~~~s~~K~l--~Gp~gG~i~~~~~~~~~~~----~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~--~---~  287 (447)
                       .....+++.|+||++  +|+|.|++++.....   +    +...+......+.. ++.....++.+.++..-  .   .
T Consensus       237 ~~~~~~i~~~S~sK~~~~~G~RiG~l~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~  312 (401)
T 7aat_A          237 EQGIDVVLSQSYAKNMGLYGERAGAFTVICRDA---EEAKRVESQLKILIRPMYS-NPPMNGARIASLILNTPELRKEWL  312 (401)
T ss_dssp             HTTCCCEEEEECTTTSCCGGGCEEEEEEECSSH---HHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHCHHHHHHHH
T ss_pred             hcCCcEEEEecCCcccccccCceEEEEEEeCCH---HHHHHHHHHHHHHHHhccC-CCChHHHHHHHHHhCCHHHHHHHH
Confidence             012458899999997  577779988632100   3    22333322111112 22222222222233210  0   1


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHCC----cEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCC
Q 013217          288 PEFKVYQNKVVSNCRALASRLVELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALV  363 (447)
Q Consensus       288 ~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~  363 (447)
                      ...++..+++.++++.+.+.|.+.|    +++..+ ..+++.|+++     +.+.+...|+++||.+.            
T Consensus       313 ~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~ll~~~gi~v~------------  374 (401)
T 7aat_A          313 VEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITD-QIGMFCFTGL-----KPEQVERLTKEFSIYMT------------  374 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHH-CCSSEEECCC-----CHHHHHHHHHHHCEECC------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceecC-CcceEEecCC-----CHHHHHHHHHhCCEecc------------
Confidence            2245667788888999999998865    444332 2344555543     46677777788999983            


Q ss_pred             CCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          364 PGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       364 ~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                       +++|+++...++     ++++++++.|++++
T Consensus       375 -~~~Ris~~~~~~-----~~i~~~~~~l~~~~  400 (401)
T 7aat_A          375 -KDGRISVAGVAS-----SNVGYLAHAIHQVT  400 (401)
T ss_dssp             -TTCEEEGGGCCT-----TTHHHHHHHHHHHH
T ss_pred             -CCCeEEeccCCh-----hhHHHHHHHHHHHh
Confidence             247998876554     56999999998765

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.89  E-value=1.4e-21  Score=192.58  Aligned_cols=289  Identities=19%  Similarity=0.172  Sum_probs=186.2

Q ss_pred             hhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccc
Q 013217           61 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI  140 (447)
Q Consensus        61 ~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~  140 (447)
                      ++...+++    +++++++|.+.     .+.++||++|+..++.+++++||+|++..+.|++......    ......| 
T Consensus        65 ~~~~~~l~----~~la~~~g~~~-----~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~----~~~~~~g-  130 (392)
T 3qhx_A           65 NPTRTALE----AALAAVEDAAF-----GRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLID----KVFTGWN-  130 (392)
T ss_dssp             CHHHHHHH----HHHHHHTTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH----HTGGGGT-
T ss_pred             ChHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHH----HHHHhcC-
Confidence            34445554    68899999873     3456889999999999999999999999999876532110    0112234 


Q ss_pred             eeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCC
Q 013217          141 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD  218 (447)
Q Consensus       141 ~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~  218 (447)
                       ++++.++.+      |++++++++++ +|++|++..++|++  ..|+++|+++|+++|+++++|++|+.+..     ..
T Consensus       131 -~~~~~v~~~------d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~-----~~  197 (392)
T 3qhx_A          131 -VEYTPVALA------DLDAVRAAIRP-TTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPAL-----QQ  197 (392)
T ss_dssp             -CEEEEECTT------CHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTT-----CC
T ss_pred             -cEEEEeCCC------CHHHHHHhhCC-CCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCccccc-----CC
Confidence             355554432      89999999987 89999998777775  78999999999999999999999865532     12


Q ss_pred             CCC-cccEEEeCCCcccCCC---CCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHH
Q 013217          219 PFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ  294 (447)
Q Consensus       219 ~~~-~~Di~~~s~~K~l~Gp---~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~  294 (447)
                      ++. ++|+++.|+||+++|+   ++|+++++++     ++.+.+....... ..+++....+   .+++.+.  .+..++
T Consensus       198 ~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~-----~~~~~l~~~~~~~-g~~~~~~~~~---~~~~~l~--~l~~~~  266 (392)
T 3qhx_A          198 PLSLGADVVLHSTTKYIGGHSDVVGGALVTNDE-----ELDQSFAFLQNGA-GAVPGPFDAY---LTMRGLK--TLVLRM  266 (392)
T ss_dssp             GGGGTCSEEEEETTTTTTCSSCCCCEEEEESCH-----HHHHHHHHHHHHH-CCCCCHHHHH---HHHHHHT--THHHHH
T ss_pred             hHHhCCcEEEEcCccccCCCCCceEEEEEECcH-----HHHHHHHHHHHhc-CCCCCHHHHH---HHHhhhh--HHHHHH
Confidence            233 5899999999999764   5799998853     5666554422111 1122222222   1223222  245667


Q ss_pred             HHHHHHHHHHHHHHHHC-CcEee-eCCCC---------------CeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCC--
Q 013217          295 NKVVSNCRALASRLVEL-GYKLV-SGGSD---------------NHLVLVDLRPMGIDGARVEKILDMASITLNKNSV--  355 (447)
Q Consensus       295 ~~~~~~~~~l~~~L~~~-g~~~~-~~~~~---------------~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~--  355 (447)
                      ++..++++.+.+.|++. ++..+ .++-.               ..++.+.+.........+...|...+|.++.+..  
T Consensus       267 ~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~~~s  346 (392)
T 3qhx_A          267 QRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAESLGSVES  346 (392)
T ss_dssp             HHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSSEECSCCCCSSC
T ss_pred             HHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCceECCCCCCCCc
Confidence            88899999999999873 44322 22110               2245556543112344555666666777665321  


Q ss_pred             ----CCCC---------CCCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217          356 ----PGDK---------SALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  391 (447)
Q Consensus       356 ----p~~~---------~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i  391 (447)
                          |...         ....++.||+|++..++    +++++.+.++|
T Consensus       347 l~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~----~~~i~~l~~al  391 (392)
T 3qhx_A          347 LIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDV----ADLLDDLKQAL  391 (392)
T ss_dssp             EEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCH----HHHHHHHHHHH
T ss_pred             eeeCcccccccccCHHHcCCCCCeEEEEeccCCH----HHHHHHHHHHh
Confidence                2110         01235679999887666    67777666654

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.89  E-value=7.9e-22  Score=194.97  Aligned_cols=288  Identities=17%  Similarity=0.117  Sum_probs=188.6

Q ss_pred             hHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccce
Q 013217           62 EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY  141 (447)
Q Consensus        62 ~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~  141 (447)
                      +....++    +.+++++|.+.     .+.++||++|+..++. +++|||+|++.++.|++++....    ..+...|. 
T Consensus        67 p~~~~l~----~~la~~~g~~~-----~i~~~sG~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~----~~~~~~G~-  131 (403)
T 3cog_A           67 PTRNCLE----KAVAALDGAKY-----CLAFASGLAATVTITH-LLKAGDQIICMDDVYGGTNRYFR----QVASEFGL-  131 (403)
T ss_dssp             HHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHH----HTGGGGTC-
T ss_pred             chHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHH----HHHHHcCC-
Confidence            4455565    67888999862     4556899999999988 89999999999999887532110    01123343 


Q ss_pred             eEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhC-CEEEEehhhhccccccccCCC
Q 013217          142 FESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVG-ALLMMDMAHISGLVAASVVAD  218 (447)
Q Consensus       142 ~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g-~~livD~a~~~g~~~~~~~~~  218 (447)
                       +++.++.+      |++++++++++ +|++|++++++||+  ..|+++|.++|+++| +++++|++|..+...     .
T Consensus       132 -~v~~v~~~------d~~~l~~~i~~-~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~-----~  198 (403)
T 3cog_A          132 -KISFVDCS------KIKLLEAAITP-ETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQ-----R  198 (403)
T ss_dssp             -EEEEECTT------SHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTC-----C
T ss_pred             -EEEEECCC------CHHHHHHhcCc-CCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccC-----C
Confidence             55554432      89999999987 89999998888775  789999999999999 999999998665421     2


Q ss_pred             CCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHH
Q 013217          219 PFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ  294 (447)
Q Consensus       219 ~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~  294 (447)
                      |+. ++|+++.|+||+++||.   +|+++++++     ++.+.+.....+. .++++.....+...+++     .+..+.
T Consensus       199 ~~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~-----~l~~~l~~~~~~~-g~~~~~~~~~~~~~~l~-----~l~~r~  267 (403)
T 3cog_A          199 PLALGADISMYSATKYMNGHSDVVMGLVSVNCE-----SLHNRLRFLQNSL-GAVPSPIDCYLCNRGLK-----TLHVRM  267 (403)
T ss_dssp             TTTTTCSEEEEETTTTTTCSSCCCCEEEEECCH-----HHHHHHHHHHHHH-CCCCCHHHHHHHHHHHT-----THHHHH
T ss_pred             ccccCCeEEEEcChhhccCCCCCeEEEEEECcH-----HHHHHHHHHHHhc-CCCCCHHHHHHHHhhhh-----HHHHHH
Confidence            333 58999999999998775   599998643     6666665432221 12333333222222332     244567


Q ss_pred             HHHHHHHHHHHHHHHHCC---------------cEeeeCC--CCCeeEEecCCCCCCCHHHHHHHHhhcCeEEcc---CC
Q 013217          295 NKVVSNCRALASRLVELG---------------YKLVSGG--SDNHLVLVDLRPMGIDGARVEKILDMASITLNK---NS  354 (447)
Q Consensus       295 ~~~~~~~~~l~~~L~~~g---------------~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~---~~  354 (447)
                      ++..+|+..+.+.|++..               +++..+.  ....++.+.+..   ....+.++|.+.||.+..   +.
T Consensus       268 ~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~---~~~~~~~~l~~~~i~~~~~s~G~  344 (403)
T 3cog_A          268 EKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKG---TLQHAEIFLKNLKLFTLAESLGG  344 (403)
T ss_dssp             HHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESS---CHHHHHHHHHHCSSSEECSCCSS
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecC---CHHHHHHHHHhCCcceEccCCCC
Confidence            778888888888887641               1111100  012334445532   235677888888886542   21


Q ss_pred             ------CCCCCC------------CCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          355 ------VPGDKS------------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       355 ------~p~~~~------------~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                            .|....            ...++.||++++..++    +++++.+.++|++++
T Consensus       345 ~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~----~d~i~~l~~al~~~~  399 (403)
T 3cog_A          345 FESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDE----EDLLEDLDQALKAAH  399 (403)
T ss_dssp             SSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCH----HHHHHHHHHHHHHHC
T ss_pred             cceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCH----HHHHHHHHHHHHHhh
Confidence                  222110            1225689999988776    888888888776544

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.88  E-value=9.5e-22  Score=195.03  Aligned_cols=328  Identities=15%  Similarity=0.172  Sum_probs=202.1

Q ss_pred             hcCeeEecCC----C---CCCHHHHHHHhh-hhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CCCcccee
Q 013217           20 FKSLELIASE----N---FTSRAVMEAVGS-CLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVN   89 (447)
Q Consensus        20 ~~~i~l~~~~----n---~~~~~v~~a~~~-~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~~~~~   89 (447)
                      +..++|..+.    +   ++++.+.+++.. .+......+|..      .....++++...+++...+|.  +++++ +.
T Consensus        29 ~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~------~~g~~~lr~~ia~~~~~~~~~~~~~~~i-~~  101 (412)
T 1yaa_A           29 ATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLG------ITGLPSLTSNAAKIIFGTQSDALQEDRV-IS  101 (412)
T ss_dssp             SSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCC------TTCCHHHHHHHHHHHHCTTCHHHHTTCE-EE
T ss_pred             CCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCC------CCCcHHHHHHHHHHHhcCCCCCCCcceE-EE
Confidence            3567876554    2   567999999988 664321223321      111234554434444433342  34432 21


Q ss_pred             eecCCcHHHHHHH--HHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEeccc-CCCCCCCCHHHHHHHhh
Q 013217           90 VQPLSGSPANFEV--YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-DESTGLVDYDMLEKTAI  166 (447)
Q Consensus        90 v~~~sGs~a~~~~--~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~id~~~l~~~~~  166 (447)
                      +++++|++|+..+  +..+++|||+|++.+|.|.++..        .+...|.  +++.+++ +++++.+|+++++++++
T Consensus       102 ~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~  171 (412)
T 1yaa_A          102 VQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMA--------IFENQGL--KTATYPYWANETKSLDLNGFLNAIQ  171 (412)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHH--------HHHTTTC--CEEEEECEETTTTEECHHHHHHHHH
T ss_pred             EeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHH--------HHHHcCc--eEEEEeeecCCCCccCHHHHHHHHH
Confidence            2245556888877  34556799999999998877532        2234454  4445545 43467899999999997


Q ss_pred             hhC-Cc-EEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccc----cCCC-CCC--c----ccEEEe
Q 013217          167 LFR-PK-LIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAAS----VVAD-PFK--Y----CDVVTT  228 (447)
Q Consensus       167 ~~~-~k-lii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~----~~~~-~~~--~----~Di~~~  228 (447)
                      +.+ ++ +++++.++||+  ..+   +++|.++|+++|+++++|++|. ++...+    ..+. .+.  +    .+++++
T Consensus       172 ~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  250 (412)
T 1yaa_A          172 KAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQ-GFATGDLDKDAYAVRLGVEKLSTVSPVFVCQ  250 (412)
T ss_dssp             HSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT-TTSSSCHHHHTHHHHHHHHHTTTTCCEEEEE
T ss_pred             hCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccc-cccCCcccchhHHHHHHHhcCCCCcceEEEe
Confidence            632 24 44447778875  443   6688999999999999999973 333221    0000 010  1    357889


Q ss_pred             CCCcccC--CCCCceEE--e-----ecCCcchhh----HHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc-----ChhH
Q 013217          229 TTHKSLR--GPRGGMIF--F-----KKDPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-----SPEF  290 (447)
Q Consensus       229 s~~K~l~--Gp~gG~i~--~-----~~~~~~~~~----~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~-----~~~~  290 (447)
                      |+||+++  |.|.|+++  +     ++      +    +.+.+....... .++++....+++..+++...     ..+.
T Consensus       251 s~sK~~~~~GlriG~~~~~~~~~~~~~------~~~~~l~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~  323 (412)
T 1yaa_A          251 SFAKNAGMYGERVGCFHLALTKQAQNK------TIKPAVTSQLAKIIRSE-VSNPPAYGAKIVAKLLETPELTEQWHKDM  323 (412)
T ss_dssp             ECTTTSCCGGGCEEEEEEECCSCTTHH------HHHHHHHHHHHHHHHTT-TSSCCHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred             ccCCCCCCcCCcceEEEEEecCCCCCH------HHHHHHHHHHHHHHhhc-cCCCChHHHHHHHHHhCCHHHHHHHHHHH
Confidence            9999874  45569988  6     33      4    555555422222 23445554555555565431     1245


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCC----cEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCe
Q 013217          291 KVYQNKVVSNCRALASRLVELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGG  366 (447)
Q Consensus       291 ~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~  366 (447)
                      ++..+++.++++.+.+.|++.+    +++..+ ..+.+.|+.+     +..++...|+++||.+..             .
T Consensus       324 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~-------------~  384 (412)
T 1yaa_A          324 VTMSSRITKMRHALRDHLVKLGTPGNWDHIVN-QCGMFSFTGL-----TPQMVKRLEETHAVYLVA-------------S  384 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHH-CCSSEEECCC-----CHHHHHHHHHHHCEECCT-------------T
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCCCeeeecc-CceEEEeeCC-----CHHHHHHHHHhCCEEecc-------------C
Confidence            6777888889999999998855    666543 2244445433     456777777889999842             4


Q ss_pred             EEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          367 IRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       367 iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      +|+++... +    ++|++++.+.|+++++
T Consensus       385 ~Ris~~~~-~----~~~i~~~~~~l~~~~~  409 (412)
T 1yaa_A          385 GRASIAGL-N----QGNVEYVAKAIDEVVR  409 (412)
T ss_dssp             SEEEGGGC-C----TTTHHHHHHHHHHHHH
T ss_pred             cEEEEccC-C----HhHHHHHHHHHHHHHH
Confidence            89997642 4    8999999999988875

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.88  E-value=2.8e-21  Score=197.67  Aligned_cols=338  Identities=13%  Similarity=0.127  Sum_probs=203.3

Q ss_pred             eeEecCCC-CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHc-C-CCCCccceeeecCCcH-HH
Q 013217           23 LELIASEN-FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF-N-LDENKWGVNVQPLSGS-PA   98 (447)
Q Consensus        23 i~l~~~~n-~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~-g-~~~~~~~~~v~~~sGs-~a   98 (447)
                      ++|..++. ..++.+.+++...+..   .+|+.     .......+++.+.+++.+.+ + ...+.- ..|.+++|+ +|
T Consensus       106 i~l~~g~~~~~~~~~v~a~~~~~~~---~~y~~-----~~~g~~~lr~~ia~~l~~~~~~~~~~~~~-~~i~~t~G~t~a  176 (533)
T 3f6t_A          106 VNYCHTELGLNRDKVVAEWVNGAVA---NNYPV-----PDRCLVNTEKIINYFLQELSYKDANLAEQ-TDLFPTEGGTAA  176 (533)
T ss_dssp             HHHHHHTTCCCHHHHHHHHHHHHHT---CSCCS-----SSSCCHHHHHHHHHHHHHHHTTTCCCGGG-EEEEEEEHHHHH
T ss_pred             eeccCCCCCcCCcHHHHHHHHHHHh---CCCCC-----CcccHHHHHHHHHHHHHHhcCCCCCCCCc-ceEEEECCHHHH
Confidence            44443333 2356666665554432   12221     11122456655556666552 3 222100 134446665 89


Q ss_pred             HHHHHHH-----hcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC-CCCCCCCHHHHHHHhhhhCCcE
Q 013217           99 NFEVYTA-----ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-ESTGLVDYDMLEKTAILFRPKL  172 (447)
Q Consensus        99 ~~~~~~a-----l~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~id~~~l~~~~~~~~~kl  172 (447)
                      +..++.+     +++|||+|++.+|.|.++..        .+...|..+..+++..+ .+++.+|+++|++++++ ++++
T Consensus       177 l~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~--------~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~-~~k~  247 (533)
T 3f6t_A          177 IVYAFHSLAENHLLKKGDKIAINEPIFTPYLR--------IPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDP-SIKA  247 (533)
T ss_dssp             HHHHHHHHHHTTSSCTTCEEEEESSCCHHHHT--------SGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCT-TEEE
T ss_pred             HHHHHHHhhhhhccCCcCEEEEcCCCcHHHHH--------HHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCC-CCeE
Confidence            9888888     78999999999999877642        23345554444444321 24578999999999976 8999


Q ss_pred             EEEcCCCCCC--CCChH---HHHHHHH-HhCCEEEEehhhhccccccccCCCCC----CcccEEEeCCCccc--CCCCCc
Q 013217          173 IIAGASAYPR--DFDYP---RMRQIAD-AVGALLMMDMAHISGLVAASVVADPF----KYCDVVTTTTHKSL--RGPRGG  240 (447)
Q Consensus       173 ii~~~~~~~~--~~~~~---~i~~ia~-~~g~~livD~a~~~g~~~~~~~~~~~----~~~Di~~~s~~K~l--~Gp~gG  240 (447)
                      |+++.++||+  ..+.+   +|.++|+ ++|+++|+|++|. ++....   .++    +..++++.|+||++  .|.|.|
T Consensus       248 v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~-~~~~~~---~~~~~~~~~~~i~~~S~SK~~g~~G~RiG  323 (533)
T 3f6t_A          248 LIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYG-AFVPNF---KSIYSVVPYNTMLVYSYSKLFGCTGWRLG  323 (533)
T ss_dssp             EEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTG-GGSTTC---CCHHHHSGGGEEEEEESHHHHTCGGGCEE
T ss_pred             EEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCcc-ccccCc---cCHhhcCCCCEEEEecCcccCCCcccceE
Confidence            9988778875  55655   8888888 5899999999975 443321   111    13459999999987  477789


Q ss_pred             eEEeecCCcchhhHHHHhhh-----------------------------------ccCCCCCCCCcHHHHHHHHH-HHHH
Q 013217          241 MIFFKKDPVLGVELESAINN-----------------------------------AVFPGLQGGPHNHTIGGLAV-CLKH  284 (447)
Q Consensus       241 ~i~~~~~~~~~~~~~~~i~~-----------------------------------~~~~~~~g~p~~~~~aal~~-al~~  284 (447)
                      +++++++     ...+++..                                   .......++++....++++. ++..
T Consensus       324 ~l~~~~~-----~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~  398 (533)
T 3f6t_A          324 VIALNEK-----NVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTH  398 (533)
T ss_dssp             EEEEESS-----CHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHH
T ss_pred             EEEECcH-----HHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHH
Confidence            9999874     22221110                                   01111223334333333211 2222


Q ss_pred             h--------cChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCC-----C----------CCH-HHHH
Q 013217          285 A--------QSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPM-----G----------IDG-ARVE  340 (447)
Q Consensus       285 ~--------~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~-----~----------~~~-~~~~  340 (447)
                      +        .....++..+.+.++++.|.+.|. .++.+..+ ...++.|+++...     +          .+. +.+.
T Consensus       399 L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~~~~~~~~-~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~  476 (533)
T 3f6t_A          399 LLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-APKDETDT-NTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLL  476 (533)
T ss_dssp             HTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-CCCCCSTT-BCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHH
T ss_pred             HhhhccccchHHHHHHHHHHHHHHHHHHHHhcC-CCccccCC-CceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHH
Confidence            2        223346677778888889999886 66654332 3345567766420     1          233 3445


Q ss_pred             HHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          341 KILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       341 ~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      +.++++||.+..+..++.    ..+.+|+++...     ++++++++++.|.+++...
T Consensus       477 ~ll~~~GV~v~pg~~f~~----~~~~iRls~a~~-----~~e~i~~~i~~L~~~l~~~  525 (533)
T 3f6t_A          477 KLAEKNGVVLVDGVGFGA----KPGELRVSQANL-----PTEDYALIGKQVLELLKEY  525 (533)
T ss_dssp             HHHHHTTSSSCTTEEECS----STTEEEEESSSS-----CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCEEEeCCcccCC----CCCEEEEEEeeC-----CHHHHHHHHHHHHHHHHHH
Confidence            666789999855432221    246899997533     3889999999999998765

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.88  E-value=1.6e-21  Score=193.25  Aligned_cols=289  Identities=18%  Similarity=0.170  Sum_probs=183.8

Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217           60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  139 (447)
Q Consensus        60 g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g  139 (447)
                      +++....++    +++++++|.+.     .+.++||++|+..++.++++|||+|++.++.|++......    ......|
T Consensus        79 ~~p~~~~l~----~~la~~~g~~~-----~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~----~~~~~~g  145 (414)
T 3ndn_A           79 GNPTVSVFE----ERLRLIEGAPA-----AFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCS----EILPRWG  145 (414)
T ss_dssp             CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHH----THHHHTT
T ss_pred             CChHHHHHH----HHHHHHHCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHH----HHHHHcC
Confidence            345556665    68888999753     3556899999999999999999999999998877532110    0011234


Q ss_pred             ceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCC
Q 013217          140 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  217 (447)
Q Consensus       140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~  217 (447)
                      .  +++.++.+      |++++++++++ +|++|++++++||+  ..|+++|+++|+++|+++++|++|+.|...     
T Consensus       146 ~--~~~~v~~~------d~~~l~~ai~~-~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~-----  211 (414)
T 3ndn_A          146 V--QTVFVDGD------DLSQWERALSV-PTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQ-----  211 (414)
T ss_dssp             C--EEEEECTT------CHHHHHHHTSS-CCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHC-----
T ss_pred             c--EEEEeCCC------CHHHHHHhcCC-CCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccccC-----
Confidence            3  45554432      89999999987 89999999888775  789999999999999999999998766432     


Q ss_pred             CCCC-cccEEEeCCCcccCC---CCCceEEeecCCcchhhHHH-HhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHH
Q 013217          218 DPFK-YCDVVTTTTHKSLRG---PRGGMIFFKKDPVLGVELES-AINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKV  292 (447)
Q Consensus       218 ~~~~-~~Di~~~s~~K~l~G---p~gG~i~~~~~~~~~~~~~~-~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~  292 (447)
                      .++. ++|+++.|+||+++|   +++|++++++      +... .+...... ..++++... +  +.+++.+  ..+..
T Consensus       212 ~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~------~~~~~~l~~~~~~-~g~~~~~~~-a--~~~~~~l--~~l~~  279 (414)
T 3ndn_A          212 QGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDR------EYIDGPVQKLMRH-TGPAMSAFN-A--WVLLKGL--ETLAI  279 (414)
T ss_dssp             CCGGGTCSEEEEETTTTTTCSSCCCCEEEEECH------HHHTTHHHHHHHH-HCCCCCHHH-H--HHHHHHG--GGHHH
T ss_pred             CchhcCCCeEeccCCccccCCCCceEEEEEECH------HHHHHHHHHHHHH-cCCCCCHHH-H--HHHHHHH--HHHHH
Confidence            2333 589999999999966   4579999987      4333 34321110 011222221 1  2233333  24567


Q ss_pred             HHHHHHHHHHHHHHHHHH-CCcEee-eCCC---------------CCeeEEecCCCC----CCCHHHHHHHHhhcCeEEc
Q 013217          293 YQNKVVSNCRALASRLVE-LGYKLV-SGGS---------------DNHLVLVDLRPM----GIDGARVEKILDMASITLN  351 (447)
Q Consensus       293 ~~~~~~~~~~~l~~~L~~-~g~~~~-~~~~---------------~~~~~~v~~~~~----~~~~~~~~~~L~~~gI~v~  351 (447)
                      +++++.++++.+.+.|++ +++..+ .++-               ...++++.+...    ......+.+.|...++.++
T Consensus       280 r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~s  359 (414)
T 3ndn_A          280 RVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLIDISNN  359 (414)
T ss_dssp             HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCSSSEECSC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhCccceEcCC
Confidence            788899999999999987 344332 2211               123556666431    1123445555555666665


Q ss_pred             cCCC------CCCC------------CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          352 KNSV------PGDK------------SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       352 ~~~~------p~~~------------~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      .+..      |...            ....++.||++...        |+.+.+.+.|++++
T Consensus       360 ~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~--------e~~~dli~dl~~al  413 (414)
T 3ndn_A          360 LGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL--------EDTDDLIADIDRAL  413 (414)
T ss_dssp             CSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS--------SCHHHHHHHHHHHH
T ss_pred             CCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc--------CCHHHHHHHHHHhh
Confidence            4321      1110            01234579998763        45556666665554

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.88  E-value=9.1e-21  Score=189.57  Aligned_cols=312  Identities=14%  Similarity=0.084  Sum_probs=198.0

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc----
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  107 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~----  107 (447)
                      .+|.|.+++.+.+.+. .  +.... + ..+...+++    +++++++|.+.     .+.++||++|+..++.++.    
T Consensus        93 ~~p~v~~Ai~~~~~~~-~--~~~~~-~-~~~~~~~l~----~~la~~~g~~~-----v~~~~sGseA~~~al~~~~~~~~  158 (439)
T 2oat_A           93 CHPKIVNALKSQVDKL-T--LTSRA-F-YNNVLGEYE----EYITKLFNYHK-----VLPMNTGVEAGETACKLARKWGY  158 (439)
T ss_dssp             TCHHHHHHHHHHHTTC-S--CCCTT-S-EESSHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhc-C--cccCc-c-CCHHHHHHH----HHHHHhcCCCE-----EEEeCCHHHHHHHHHHHHHHHhh
Confidence            5799999998877542 1  11111 2 123334444    57777887542     2345778899999888764    


Q ss_pred             -----CCC-CEEEEecCCCCcccCCCccccccccccccc----------eeEEEecccCCCCCCCCHHHHHHHhhhhCCc
Q 013217          108 -----KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSI----------YFESMPYRLDESTGLVDYDMLEKTAILFRPK  171 (447)
Q Consensus       108 -----~pg-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~----------~~~~~~~~~~~~~~~id~~~l~~~~~~~~~k  171 (447)
                           .|| |+|++.++.|.+....       .+...+.          ...++.++.      .|+++|+++++..+++
T Consensus       159 ~~~g~~~g~~~vi~~~~~yhg~~~~-------~~~~~g~~~~~~~~~p~~~~v~~~~~------~d~~~le~~l~~~~~~  225 (439)
T 2oat_A          159 TVKGIQKYKAKIVFAAGNFWGRTLS-------AISSSTDPTSYDGFGPFMPGFDIIPY------NDLPALERALQDPNVA  225 (439)
T ss_dssp             HTTCCCTTCCEEEEETTCCCCSSHH-------HHTTCCCHHHHTTSCSCCTTEEEECS------SCHHHHHHHTTSTTEE
T ss_pred             hccCCCCCCCeEEEEcCCCCCCCHh-------HhhcCCChhcccCCCCCCCCeEEeCC------CCHHHHHHHhCCCCEE
Confidence                 467 8999998876554210       0111110          011222222      3899999999533778


Q ss_pred             EEEEcCCCCC-C-CC----ChHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccCC--CCCc
Q 013217          172 LIIAGASAYP-R-DF----DYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRG--PRGG  240 (447)
Q Consensus       172 lii~~~~~~~-~-~~----~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~G--p~gG  240 (447)
                      +|++++.+++ + ..    ++++|.++|++||+++|+|++| .|+...+.. . ...+ ..|++  |++|+|+|  .++|
T Consensus       226 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~-~g~g~~g~~~~~~~~~~~~Di~--t~sK~l~~G~~~~G  302 (439)
T 2oat_A          226 AFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQ-TGLARTGRWLAVDYENVRPDIV--LLGKALSGGLYPVS  302 (439)
T ss_dssp             EEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTT-TTTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCCE
T ss_pred             EEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc-cCCccCCcchhHHHhCCCCcEE--EecccccCCCCCeE
Confidence            8888754332 3 33    6899999999999999999998 564332211 0 0111 35877  55699865  4789


Q ss_pred             eEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeC-C
Q 013217          241 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSG-G  319 (447)
Q Consensus       241 ~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~  319 (447)
                      ++++++      ++.+.+......+.. +.+....++..++++.+..+   ++.+++.++.+++.+.|++.+++++.. .
T Consensus       303 ~v~~~~------~~~~~l~~~~~~~t~-~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~  372 (439)
T 2oat_A          303 AVLCDD------DIMLTIKPGEHGSTY-GGNPLGCRVAIAALEVLEEE---NLAENADKLGIILRNELMKLPSDVVTAVR  372 (439)
T ss_dssp             EEEECH------HHHTTSCTTSSCCSS-TTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHTTSCTTTEEEEE
T ss_pred             EEEECH------HHHhccCCCCcccCC-CcCHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            999987      676666543222222 23445555555577765432   356778888999999998765543211 0


Q ss_pred             CCCeeEEecCCCCC-CCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          320 SDNHLVLVDLRPMG-IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       320 ~~~~~~~v~~~~~~-~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      ....++++++.... .+..++.+.|.++||.+..    .     ..+.+|++++..++    ++|++++++.|++++.
T Consensus       373 ~~g~~~~v~l~~~~~~~~~~l~~~l~~~Gv~v~~----~-----~~~~iRi~~~~~~t----~e~i~~~l~~l~~~l~  437 (439)
T 2oat_A          373 GKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKP----T-----HGDIIRFAPPLVIK----EDELRESIEIINKTIL  437 (439)
T ss_dssp             EETTEEEEEECCCSSCCHHHHHHHHHHTTEECCB----S-----SSSEEEECCCTTCC----HHHHHHHHHHHHHHHH
T ss_pred             eeeeEEEEEEecCccHHHHHHHHHHHHCCeEEec----C-----CCCEEEEECccCCC----HHHHHHHHHHHHHHHH
Confidence            12345566664321 3567888888889999853    1     24589999877666    9999999999998875

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.88  E-value=3.4e-21  Score=189.95  Aligned_cols=313  Identities=15%  Similarity=0.102  Sum_probs=199.0

Q ss_pred             CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc--C
Q 013217           31 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--K  108 (447)
Q Consensus        31 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~--~  108 (447)
                      +.++.+.+++...+... .  +.... | ..+...+    .++++++++|++++.+   +.+++|++|+..++.++.  .
T Consensus        61 ~~~~~v~~a~~~~~~~~-~--~~~~~-~-~~~~~~~----l~~~la~~~~~~~~~v---~~~~gg~~a~~~al~~~~~~~  128 (395)
T 1vef_A           61 HGNPEVVEAVKRQAETL-M--AMPQT-L-PTPMRGE----FYRTLTAILPPELNRV---FPVNSGTEANEAALKFARAHT  128 (395)
T ss_dssp             BTCHHHHHHHHHHHHHC-C--CCCTT-S-CCHHHHH----HHHHHHHTSCTTEEEE---EEESSHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhC-C--CCccc-c-CCHHHHH----HHHHHHHhcCCCcCEE---EEcCcHHHHHHHHHHHHHHHh
Confidence            36899999998887642 1  11111 2 1222333    4468889998765422   334566799998888764  6


Q ss_pred             CCCEEEEecCCCCcccCCCccccccccccccceeE---EEecccCCCC---CCCCHHHHHHHhhhhCCcEEEEcCCCCC-
Q 013217          109 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE---SMPYRLDEST---GLVDYDMLEKTAILFRPKLIIAGASAYP-  181 (447)
Q Consensus       109 pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~---~~id~~~l~~~~~~~~~klii~~~~~~~-  181 (447)
                      +||+|++.++.|.+....       .+...|....   ..+  +..+.   ...|+++|++++++ ++++|++++++++ 
T Consensus       129 ~~~~vi~~~~~y~~~~~~-------~~~~~g~~~~~~~~~p--~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~t  198 (395)
T 1vef_A          129 GRKKFVAAMRGFSGRTMG-------SLSVTWEPKYREPFLP--LVEPVEFIPYNDVEALKRAVDE-ETAAVILEPVQGEG  198 (395)
T ss_dssp             SCCEEEEETTCCCCSSHH-------HHHTCCCHHHHGGGCS--CSSCEEEECTTCHHHHHHHCCT-TEEEEEECSEETTT
T ss_pred             CCCeEEEEcCCcCCCchh-------hhhhcCCcccccccCC--CCCCeeEeCCCcHHHHHHHhcc-CEEEEEEeCccCCC
Confidence            899999998876543211       1112222100   001  11000   02589999999986 8899988765443 


Q ss_pred             C-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC---C-cccEEEeCCCcccCC-CCCceEEeecCCcch
Q 013217          182 R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K-YCDVVTTTTHKSLRG-PRGGMIFFKKDPVLG  251 (447)
Q Consensus       182 ~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~---~-~~Di~~~s~~K~l~G-p~gG~i~~~~~~~~~  251 (447)
                      + ..+    +++|.++|+++|+++++|++|+ |+...+. ..++   + ..|++  |+||++++ ++.|++++++     
T Consensus       199 G~~~~~~~~l~~i~~l~~~~~~~li~Dea~~-~~~~~g~-~~~~~~~~~~~d~~--s~sK~~~~g~~~G~~~~~~-----  269 (395)
T 1vef_A          199 GVRPATPEFLRAAREITQEKGALLILDEIQT-GMGRTGK-RFAFEHFGIVPDIL--TLAKALGGGVPLGVAVMRE-----  269 (395)
T ss_dssp             TSEECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSS-SSTHHHHTCCCSEE--EECGGGGTTSSCEEEEEEH-----
T ss_pred             CccCCCHHHHHHHHHHHHHcCCEEEEEeccc-CCccCCc-hhHhhhcCCCCCEE--EEcccccCCCceEEEEehH-----
Confidence            4 557    9999999999999999999986 5432221 1111   1 36777  56899865 4569999988     


Q ss_pred             hhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeee-CCCCCeeEEecCC
Q 013217          252 VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVS-GGSDNHLVLVDLR  330 (447)
Q Consensus       252 ~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~v~~~  330 (447)
                       ++.+.+...... ...+++....++...+++.+..   .++.+++.++++++.+.|++.+.+++. ......++++++.
T Consensus       270 -~~~~~l~~~~~~-~~~~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~~~  344 (395)
T 1vef_A          270 -EVARSMPKGGHG-TTFGGNPLAMAAGVAAIRYLER---TRLWERAAELGPWFMEKLRAIPSPKIREVRGMGLMVGLELK  344 (395)
T ss_dssp             -HHHHTSCTTSSC-CSSTTCHHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHTSCCTTEEEEEEETTEEEEEES
T ss_pred             -HHHhhhccCCcC-CCcCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHhhcCceEEEEEEEEEEEEEEc
Confidence             676666542111 1223455555556667765532   345677888899999999886542211 0112345677765


Q ss_pred             CCCCCHHHHHHHHh-hcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          331 PMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       331 ~~~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      .   +..++.+.|. ++||.+...         ..+.+|++++..++    ++|++++++.|++++
T Consensus       345 ~---~~~~l~~~l~~~~gi~v~~~---------~~~~iRi~~~~~~~----~~~i~~~~~~l~~~l  394 (395)
T 1vef_A          345 E---KAAPYIARLEKEHRVLALQA---------GPTVIRFLPPLVIE----KEDLERVVEAVRAVL  394 (395)
T ss_dssp             S---CSHHHHHHHHHHHCEECEES---------STTEEEECCCTTCC----HHHHHHHHHHHHHHH
T ss_pred             C---hHHHHHHHHHHHCCeEEecC---------CCCEEEEeCCCCCC----HHHHHHHHHHHHHHh
Confidence            3   2567888887 899998642         14589999876666    999999999998765

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.88  E-value=6.7e-22  Score=196.74  Aligned_cols=341  Identities=16%  Similarity=0.169  Sum_probs=205.7

Q ss_pred             HHHHHHHHHHH-hhcCeeEecC---CC----CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHc
Q 013217            8 VCEIITKEKER-QFKSLELIAS---EN----FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF   79 (447)
Q Consensus         8 ~~~~~~~e~~~-~~~~i~l~~~---~n----~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~   79 (447)
                      ++.+...-.+. ..+.|+|..+   ++    ++++.|++++...+......+|+..      ....++.+...+++....
T Consensus        36 i~~~~~~~~~~~~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~------~g~~~lr~~ia~~l~~~~  109 (420)
T 4f4e_A           36 ILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPI------DGIAAYDASVQKLLLGDD  109 (420)
T ss_dssp             HHHHHHHHHHCCCSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCT------TCCHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHhcCCCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCC------CCcHHHHHHHHHHhcCCC
Confidence            55555543332 2356888776   22    2348999999887765222344332      112344433334444333


Q ss_pred             CC--CCCccceeeecCCcH-HHHHHH--HHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEeccc-CCCC
Q 013217           80 NL--DENKWGVNVQPLSGS-PANFEV--YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-DEST  153 (447)
Q Consensus        80 g~--~~~~~~~~v~~~sGs-~a~~~~--~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~  153 (447)
                      +.  +++.+  +|.+++|+ +|+..+  +.++++|||+|++.+|.|.++..        .+...|.  +++.+++ ++++
T Consensus       110 ~~~~~~~~~--~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~--------~~~~~g~--~~~~v~~~~~~~  177 (420)
T 4f4e_A          110 SPLIAAGRV--VTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRA--------LFDMAGF--EVVAYPYYDAKT  177 (420)
T ss_dssp             CHHHHTTCE--EEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHH--------HHHHTTC--CEEEEECEETTT
T ss_pred             ccccccCce--EEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHH--------HHHHcCC--eEEEeeeecccc
Confidence            21  23310  23335554 898888  55778999999999998876532        2334554  4445445 3356


Q ss_pred             CCCCHHHHHHHhhh--hCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhcccccccc-CCCC------
Q 013217          154 GLVDYDMLEKTAIL--FRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VADP------  219 (447)
Q Consensus       154 ~~id~~~l~~~~~~--~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~~~------  219 (447)
                      +.+|++++++.+++  .++++++++.++||+  ..+   +++|.++|+++|+++++|+++ .++...+. ...+      
T Consensus       178 ~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y-~~~~~~~~~~~~~~~~~~~  256 (420)
T 4f4e_A          178 NGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAY-QGFGESIEADAAAVRLFAA  256 (420)
T ss_dssp             TEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESC-TTSSSCTTGGGHHHHHHHH
T ss_pred             CccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccc-ccccCCcchhhHHHHHHHh
Confidence            78999999999974  267888888888876  433   678899999999999999996 44443310 0000      


Q ss_pred             CCcccEEEeCCCcccC--CCCCceEEeecCCcchhhHHHH----hhhccCCCCCCCCcHHHHHHHHHHHHHhc-----Ch
Q 013217          220 FKYCDVVTTTTHKSLR--GPRGGMIFFKKDPVLGVELESA----INNAVFPGLQGGPHNHTIGGLAVCLKHAQ-----SP  288 (447)
Q Consensus       220 ~~~~Di~~~s~~K~l~--Gp~gG~i~~~~~~~~~~~~~~~----i~~~~~~~~~g~p~~~~~aal~~al~~~~-----~~  288 (447)
                      ....++++.|+||+++  |.|.|+++......   ++.+.    +......... +++....++.+.++....     ..
T Consensus       257 ~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~  332 (420)
T 4f4e_A          257 ANLNVFVSSSFSKSFSLYGERVGALSIITDSK---DEAARVLSQLKRVIRTNYS-NPPTHGGAIVAAVLASPELRASWVQ  332 (420)
T ss_dssp             TTCCEEEEEECTTTTTCGGGCEEEEEEECSSH---HHHHHHHHHHHHHHHTTTS-SCCSHHHHHHHHHHHCHHHHHHHHH
T ss_pred             cCCCEEEEEeCCccCcCcCCCcEEEEEEcCCH---HHHHHHHHHHHHHHhcccC-CCCHHHHHHHHHHhcCHHHHHHHHH
Confidence            1124688999999974  77779986421100   33332    2221112222 223333333333333210     12


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHC----CcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCC
Q 013217          289 EFKVYQNKVVSNCRALASRLVEL----GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVP  364 (447)
Q Consensus       289 ~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~  364 (447)
                      ..++..+++.++++.+.+.|++.    |+.+..+ ....+.|+.+     +.+.+.+.|.++||.+..            
T Consensus       333 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~g~~~~~~~-----~~~~~~~~l~~~gI~v~~------------  394 (420)
T 4f4e_A          333 ELGEMRDRIRAMRNGLVERLKAAGIERDFSFINA-QRGMFSYSGL-----TSAQVDRLREEFGIYAVS------------  394 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHH-SCSSEEECCC-----CHHHHHHHHHHHCEECCT------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCceeECC-CccEEEEeCC-----CHHHHHHHHHhCCEEecC------------
Confidence            34667788889999999999885    6655443 2344555543     457788889999999842            


Q ss_pred             CeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          365 GGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       365 ~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                       +.|+++..++     +++++++++.|++++
T Consensus       395 -~~Ris~~~~~-----~~~i~~~~~~l~~~l  419 (420)
T 4f4e_A          395 -TGRICVAALN-----TRNLDVVANAIAAVL  419 (420)
T ss_dssp             -TSEEEGGGCC-----TTTHHHHHHHHHHHH
T ss_pred             -CCeEEEecCC-----HHHHHHHHHHHHHHh
Confidence             2388875433     577999999998775

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.88  E-value=2.8e-20  Score=185.67  Aligned_cols=313  Identities=12%  Similarity=0.074  Sum_probs=192.9

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc----
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  107 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~----  107 (447)
                      .+|.|.+++...+.+. .  +.... + ..+...+++    +++++++|.+.     .+.++||++|+..++..+.    
T Consensus        82 ~~p~v~~ai~~~~~~~-~--~~~~~-~-~~~~~~~l~----~~la~~~g~~~-----v~~~~sGseA~~~al~~a~~~~~  147 (433)
T 1z7d_A           82 CHPNILNAMINQAKNL-T--ICSRA-F-FSVPLGICE----RYLTNLLGYDK-----VLMMNTGAEANETAYKLCRKWGY  147 (433)
T ss_dssp             TCHHHHHHHHHHHTTC-S--CCCTT-S-EEHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhC-C--CccCC-c-CCHHHHHHH----HHHHhhcCCCe-----EEEeCCHHHHHHHHHHHHHHHhh
Confidence            5799999998877542 1  11111 2 223333443    57788888542     2445778899999887753    


Q ss_pred             -----CCC-CEEEEecCCCCcccCCCccccccccccccce----------eEEEecccCCCCCCCCHHHHHHHhhhhCCc
Q 013217          108 -----KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY----------FESMPYRLDESTGLVDYDMLEKTAILFRPK  171 (447)
Q Consensus       108 -----~pg-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~~~~~id~~~l~~~~~~~~~k  171 (447)
                           .|| |+|++.++.|.+.....       +...+..          ..++.++.      .|+++|+++++..+++
T Consensus       148 ~~~g~~~gr~~vi~~~~~yhg~~~~~-------~~~~g~~~~~~~~~p~~~~v~~~~~------~d~~~le~~l~~~~~~  214 (433)
T 1z7d_A          148 EVKKIPENMAKIVVCKNNFSGRTLGC-------ISASTTKKCTSNFGPFAPQFSKVPY------DDLEALEEELKDPNVC  214 (433)
T ss_dssp             HTSCCCTTCCEEEEETTC---------------------------------CEEEECT------TCHHHHHHHHTSTTEE
T ss_pred             hccCCCCCCCeEEEEeCCcCCcchhh-------hcccCCccccccCCCCCCCeEEeCC------CCHHHHHHHhCCCCEE
Confidence                 478 99999998775542111       1122210          11222221      3899999999433788


Q ss_pred             EEEEcCCCC-CC-CC----ChHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccCC--CCCc
Q 013217          172 LIIAGASAY-PR-DF----DYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRG--PRGG  240 (447)
Q Consensus       172 lii~~~~~~-~~-~~----~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~G--p~gG  240 (447)
                      +|++++.++ ++ ..    ++++|.++|+++|+++|+|++|. |+...+.. . ...+ ..|++  |++|+++|  .++|
T Consensus       215 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~g~~g~~~~~~~~~~~~di~--t~sK~l~~G~~~~G  291 (433)
T 1z7d_A          215 AFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQT-GLGRTGKLLCVHHYNVKPDVI--LLGKALSGGHYPIS  291 (433)
T ss_dssp             EEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCCE
T ss_pred             EEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCcc-CCCcCCcchhhHhcCCCCCEE--EECccccCCCCCeE
Confidence            888875433 23 33    68999999999999999999984 64332211 0 1111 36877  45699864  4789


Q ss_pred             eEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC--CcEeeeC
Q 013217          241 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVSG  318 (447)
Q Consensus       241 ~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~  318 (447)
                      ++++++      ++.+.+......+.. +.+....++..++++.+...   ++.+++.++.+++.+.|++.  ++..+..
T Consensus       292 ~v~~~~------~~~~~l~~~~~~~t~-~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~  361 (433)
T 1z7d_A          292 AVLAND------DIMLVIKPGEHGSTY-GGNPLAASICVEALNVLINE---KLCENAEKLGGPFLENLKRELKDSKIVRD  361 (433)
T ss_dssp             EEEECH------HHHTTCCTTCCCCTT-TTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHTTCTTEEE
T ss_pred             EEEECH------HHHhhhccccccccC-CCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence            999987      676666543222222 33455555555577765432   35677788888888888763  5432210


Q ss_pred             -CCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          319 -GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       319 -~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                       .....++++++.....+..++.+.|.++||.+...         ..+.+|++++..++    ++|++++++.|+++++.
T Consensus       362 ~~~~g~~~~i~~~~~~~~~~~~~~~l~~~Gv~v~~~---------~~~~iRi~~~~~~t----~e~i~~~l~~l~~~l~~  428 (433)
T 1z7d_A          362 VRGKGLLCAIEFKNELVNVLDICLKLKENGLITRDV---------HDKTIRLTPPLCIT----KEQLDECTEIIVKTVKF  428 (433)
T ss_dssp             EEEETTEEEEEECTTTCCHHHHHHHHHHTTEECCEE---------TTTEEEECCCTTCC----HHHHHHHHHHHHHHHHH
T ss_pred             EEeeeeEEEEEEccChhHHHHHHHHHHHCCeEEecC---------CCCEEEEECCcCCC----HHHHHHHHHHHHHHHHH
Confidence             01234566676532135678888888899998532         14589999887666    99999999999988764

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.87  E-value=1.4e-20  Score=185.03  Aligned_cols=282  Identities=17%  Similarity=0.122  Sum_probs=186.1

Q ss_pred             HHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC
Q 013217           72 QKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE  151 (447)
Q Consensus        72 ~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  151 (447)
                      ++.+++++|.+ +    .+.++||++|+..++.+++++||+|++..+.|++.+....    ......|.  +++.++.  
T Consensus        58 ~~~la~~~~~~-~----~i~~~sGt~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~----~~~~~~g~--~~~~~~~--  124 (386)
T 1cs1_A           58 QRALAELEGGA-G----AVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFD----SLAKRGCY--RVLFVDQ--  124 (386)
T ss_dssp             HHHHHHHHTCS-E----EEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH----HHHTTTSC--EEEEECT--
T ss_pred             HHHHHHHhCCC-c----EEEeCCHHHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHH----HHHHhcCC--EEEEeCC--
Confidence            36788899987 2    3445899999999999999999999999998876432100    00122343  4444333  


Q ss_pred             CCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-cccEEEe
Q 013217          152 STGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTT  228 (447)
Q Consensus       152 ~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-~~Di~~~  228 (447)
                          .|++++++++++ ++++|+++.++|++  ..|+++|.++|+++|+++++|++|..+....     ++. ++|++++
T Consensus       125 ----~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~-----~~~~~~di~~~  194 (386)
T 1cs1_A          125 ----GDEQALRAALAE-KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQN-----PLALGADLVLH  194 (386)
T ss_dssp             ----TCHHHHHHHHHT-CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCC-----GGGGTCSEEEE
T ss_pred             ----CCHHHHHHhhcc-CCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCC-----ccccCceEEEE
Confidence                289999999987 89999998777774  7799999999999999999999987664321     222 4799999


Q ss_pred             CCCcccCCCC---CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHH
Q 013217          229 TTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA  305 (447)
Q Consensus       229 s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~  305 (447)
                      |+||+++||.   ||+++++++     ++.+.+....... .++++....++...+++     .+.++.++..++++.+.
T Consensus       195 s~sK~~~~~~~~~~G~~~~~~~-----~l~~~l~~~~~~~-~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~  263 (386)
T 1cs1_A          195 SCTKYLNGHSDVVAGVVIAKDP-----DVVTELAWWANNI-GVTGGAFDSYLLLRGLR-----TLVPRMELAQRNAQAIV  263 (386)
T ss_dssp             ETTTTTTCSSCCCCEEEEESSH-----HHHHHHHHHHHHH-TCBCCHHHHHHHHHHHT-----THHHHHHHHHHHHHHHH
T ss_pred             cCcccccCCCCceeEEEEeCcH-----HHHHHHHHHHHhc-CCCCCHHHHHHHHhccc-----HHHHHHHHHHHHHHHHH
Confidence            9999987665   399998763     4666655432221 12334333222222222     24556777888889999


Q ss_pred             HHHHHCC-cEee-eCC---------------CCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCC---------CCCC-
Q 013217          306 SRLVELG-YKLV-SGG---------------SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNS---------VPGD-  358 (447)
Q Consensus       306 ~~L~~~g-~~~~-~~~---------------~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~---------~p~~-  358 (447)
                      +.|.+.+ +.-. .+.               ....++.+.+..   ....+.+.|.+.||.++...         .|.. 
T Consensus       264 ~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~~~~g~~~sl~~~~~~~  340 (386)
T 1cs1_A          264 KYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG---DEQTLRRFLGGLSLFTLAESLGGVESLISHAATM  340 (386)
T ss_dssp             HHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS---CHHHHHHHHHTCSSSEEBSCCCSSSCEEEEGGGT
T ss_pred             HHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECC---CHHHHHHHHHhCCcceEcccCCCcceeeeccccc
Confidence            8887742 3211 110               013344445432   25678888989999886311         0100 


Q ss_pred             --C--C-------CCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          359 --K--S-------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       359 --~--~-------~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                        .  +       ...++.+|++++..++    +++++.+.++|+++
T Consensus       341 ~~~~~~~~~~~~~g~~~~~iRis~~~~~~----~~~i~~l~~al~~~  383 (386)
T 1cs1_A          341 THAGMAPEARAAAGISETLLRISTGIEDG----EDLIADLENGFRAA  383 (386)
T ss_dssp             TTTTSCHHHHHHHTCCTTEEEEECCSSCH----HHHHHHHHHHHHHH
T ss_pred             ccccCCHHHHHhcCCCCCeEEEEEccCCH----HHHHHHHHHHHHHh
Confidence              0  0       1124689999988766    88988888887654

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.87  E-value=6.7e-20  Score=182.75  Aligned_cols=325  Identities=14%  Similarity=0.047  Sum_probs=200.6

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc---C
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---K  108 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~---~  108 (447)
                      .+|.|++++...+....  +++..+| . .+...++    +++++++++.+++++   +..++|++|+..++.++.   +
T Consensus        60 ~~p~v~~a~~~~~~~~~--~~~~~~~-~-~~~~~~l----~~~la~~~~~~~~~v---~~~~ggtea~~~ai~~~~~~~~  128 (429)
T 1s0a_A           60 NHPQLNAAMKSQIDAMS--HVMFGGI-T-HAPAIEL----CRKLVAMTPQPLECV---FLADSGSVAVEVAMKMALQYWQ  128 (429)
T ss_dssp             SCHHHHHHHHHHHHHCS--CCCCSSE-E-CHHHHHH----HHHHHHHSCTTCCEE---EEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcc--ccccccc-C-CHHHHHH----HHHHHHhCCCCCCEE---EEeCCHHHHHHHHHHHHHHHhc
Confidence            47999999988876532  1211111 1 1222223    357888998766532   334566799998887653   2


Q ss_pred             ----CCCEEEEecCCCCcccCCCccc------cccccccccceeEEEecccC---CCCCCCCHHHHHHHhhh--hCCcEE
Q 013217          109 ----PHDRIMGLDLPHGGHLSHGFMT------PKRRVSGTSIYFESMPYRLD---ESTGLVDYDMLEKTAIL--FRPKLI  173 (447)
Q Consensus       109 ----pgd~Vl~~~~~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~---~~~~~id~~~l~~~~~~--~~~kli  173 (447)
                          |||+|++.++.|.+........      ..............++++..   ...+.+|+++|++++++  .++++|
T Consensus       129 ~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v  208 (429)
T 1s0a_A          129 AKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAV  208 (429)
T ss_dssp             HHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEE
T ss_pred             ccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEE
Confidence                7999999998765532100000      00000000011244443321   01235899999999874  256777


Q ss_pred             EEcCC-CCC-C-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccCC--CCCce
Q 013217          174 IAGAS-AYP-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRG--PRGGM  241 (447)
Q Consensus       174 i~~~~-~~~-~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~G--p~gG~  241 (447)
                      ++++. +++ + ..+    +++|.++|++||+++|+|++|. |+...+.. . .... ..|++++  +|+|+|  .+.|+
T Consensus       209 i~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~g~~g~~~~~~~~~~~~d~~t~--sK~l~~G~~~iG~  285 (429)
T 1s0a_A          209 IIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIAT-GFGRTGKLFACEHAEIAPDILCL--GKALTGGTMTLSA  285 (429)
T ss_dssp             EECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEE--CGGGGTSSSCCEE
T ss_pred             EEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhh-CCcccchHHHhhhcCCCCCEEEe--cccccCCCccceE
Confidence            77765 554 3 455    8999999999999999999985 33211110 0 0011 3577755  499876  46699


Q ss_pred             EEeecCCcchhhHHHHhhhcc----CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC----Cc
Q 013217          242 IFFKKDPVLGVELESAINNAV----FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL----GY  313 (447)
Q Consensus       242 i~~~~~~~~~~~~~~~i~~~~----~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~  313 (447)
                      +++++      ++.+.+....    ..+...+++...+++..++++.+...   ++.+++.++++++.+.|++.    ++
T Consensus       286 ~~~~~------~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~  356 (429)
T 1s0a_A          286 TLTTR------EVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESG---DWQQQVADIEVQLREQLAPARDAEMV  356 (429)
T ss_dssp             EEECH------HHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHGGGGGCTTE
T ss_pred             EEeCH------HHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence            99887      6777665421    01112234566666666788766543   34677778888999998773    34


Q ss_pred             EeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217          314 KLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       314 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~  393 (447)
                      ..+.+  ...++++++.. ..+..++.+.|.++||.++..          .+.+|++++..++    ++|++++++.|++
T Consensus       357 ~~~~~--~g~~~~~~~~~-~~~~~~l~~~l~~~Gi~v~~~----------~~~iRis~~~~~t----~e~i~~~~~~l~~  419 (429)
T 1s0a_A          357 ADVRV--LGAIGVVETTH-PVNMAALQKFFVEQGVWIRPF----------GKLIYLMPPYIIL----PQQLQRLTAAVNR  419 (429)
T ss_dssp             EEEEE--ETTEEEEEESS-CBCHHHHHHHHHHTTEECCCB----------TTEEEECCCTTCC----HHHHHHHHHHHHH
T ss_pred             EEEEE--eeEEEEEEECC-cccHHHHHHHHHHCCCEEecc----------CCEEEEECCCCCC----HHHHHHHHHHHHH
Confidence            32222  23356777653 245677888888899998531          2589999887777    9999999999988


Q ss_pred             HHH
Q 013217          394 GVE  396 (447)
Q Consensus       394 ~l~  396 (447)
                      ++.
T Consensus       420 ~~~  422 (429)
T 1s0a_A          420 AVQ  422 (429)
T ss_dssp             HTS
T ss_pred             HHH
Confidence            765

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.87  E-value=1.6e-21  Score=193.76  Aligned_cols=225  Identities=17%  Similarity=0.115  Sum_probs=150.8

Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217           60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  139 (447)
Q Consensus        60 g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g  139 (447)
                      +++..+.+|    +++++++|.+.     .+.++||++|+..++.++++|||+|++.++.|++......    ..+...|
T Consensus        80 ~~p~~~~le----~~lA~l~g~~~-----~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~----~~~~~~G  146 (430)
T 3ri6_A           80 SNPTVEDLE----QRLKNLTGALG-----VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQ----KTLPSFG  146 (430)
T ss_dssp             CCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH----THHHHTT
T ss_pred             CCHHHHHHH----HHHHHHHCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHH----HHHHHcC
Confidence            445566776    67889999864     3456899999999999999999999999998877542110    0122334


Q ss_pred             ceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCC
Q 013217          140 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  217 (447)
Q Consensus       140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~  217 (447)
                      .  +++.++.+      |++++++++++ +|++|+++.++||+  ..|+++|.++|+++|+++++|++|+.+..     .
T Consensus       147 ~--~~~~v~~~------d~~~l~~ai~~-~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~-----~  212 (430)
T 3ri6_A          147 I--EVRFVDVM------DSLAVEHACDE-TTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYL-----L  212 (430)
T ss_dssp             C--EEEEECTT------CHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTT-----C
T ss_pred             C--EEEEeCCC------CHHHHHHhhCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc-----C
Confidence            3  55554332      89999999987 89999998887775  78999999999999999999999876643     2


Q ss_pred             CCCC-cccEEEeCCCcccCCC---CCceEEeecCCcc-----hhh---------HHHHhhhccCCCCCCCCcHHHHHHHH
Q 013217          218 DPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVL-----GVE---------LESAINNAVFPGLQGGPHNHTIGGLA  279 (447)
Q Consensus       218 ~~~~-~~Di~~~s~~K~l~Gp---~gG~i~~~~~~~~-----~~~---------~~~~i~~~~~~~~~g~p~~~~~aal~  279 (447)
                      .|.. ++|+++.|++|+|+|+   .||+++.+.....     +..         +..++.........+.+.. ..+.  
T Consensus       213 ~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~~-~~a~--  289 (430)
T 3ri6_A          213 EAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSP-HNAY--  289 (430)
T ss_dssp             CGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCCH-HHHH--
T ss_pred             ChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCCH-HHHH--
Confidence            2333 5899999999999887   6788886543110     001         1121111100001112222 1221  


Q ss_pred             HHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEee
Q 013217          280 VCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLV  316 (447)
Q Consensus       280 ~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~  316 (447)
                      .+++.+  ..+..++++..+|++.+++.|++ ++++.+
T Consensus       290 l~l~~l--~~l~~r~~~~~~na~~la~~L~~~p~v~~V  325 (430)
T 3ri6_A          290 LQSLGL--ETMALRIERSCQNAQELAHWLLSIPQVKCV  325 (430)
T ss_dssp             HHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCTTCEEE
T ss_pred             HHHhhh--hhHHHHHHHHHHHHHHHHHHHhCCCCccEE
Confidence            223322  23566788889999999999987 466533

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.87  E-value=3.9e-21  Score=189.41  Aligned_cols=284  Identities=13%  Similarity=0.097  Sum_probs=179.6

Q ss_pred             HHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC
Q 013217           71 CQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD  150 (447)
Q Consensus        71 ~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  150 (447)
                      .++.+++++|.+.     .+.++||++|+..++. +++|||+|++..+.|++.+....    ..+...|.  +++.++++
T Consensus        60 lr~~la~~~g~~~-----~i~~~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~----~~~~~~G~--~v~~v~~~  127 (393)
T 1n8p_A           60 LERAVAALENAQY-----GLAFSSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFT----KVANAHGV--ETSFTNDL  127 (393)
T ss_dssp             HHHHHHHHTTCSE-----EEEESCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHH----HTSTTTCS--CCEEESSH
T ss_pred             HHHHHHHHhCCCc-----EEEECChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHH----HHHHHcCc--EEEEeCCC
Confidence            3468899999872     3456899999999999 99999999999998876432100    01123343  33443332


Q ss_pred             CCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHh----CCEEEEehhhhccccccccCCCCCC-cc
Q 013217          151 ESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAV----GALLMMDMAHISGLVAASVVADPFK-YC  223 (447)
Q Consensus       151 ~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~----g~~livD~a~~~g~~~~~~~~~~~~-~~  223 (447)
                            | +++++++++ +|++|++.+++|++  ..|+++|.++|+++    |+++++|++|+.+...     .++. ++
T Consensus       128 ------d-~~l~~~i~~-~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~-----~~~~~~~  194 (393)
T 1n8p_A          128 ------L-NDLPQLIKE-NTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYIS-----NPLNFGA  194 (393)
T ss_dssp             ------H-HHHHHHSCS-SEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-----CGGGGTC
T ss_pred             ------h-HHHHHhccc-CceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccC-----CHHHcCC
Confidence                  7 899998876 89999998777775  78999999999999    9999999999766432     1222 48


Q ss_pred             cEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHH
Q 013217          224 DVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN  300 (447)
Q Consensus       224 Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~  300 (447)
                      |++++|+||+++++.   ||+++++++     ++.+.+....... .++++....++...+++     .+....++..++
T Consensus       195 di~~~S~sK~~g~~G~rigG~~~~~~~-----~~~~~l~~~~~~~-g~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~  263 (393)
T 1n8p_A          195 DIVVHSATKYINGHSDVVLGVLATNNK-----PLYERLQFLQNAI-GAIPSPFDAWLTHRGLK-----TLHLRVRQAALS  263 (393)
T ss_dssp             SEEEEETTTTTTCSSCCCCEEEEESCH-----HHHHHHHHHHHHH-CCCCCHHHHHHHHHHHT-----THHHHHHHHHHH
T ss_pred             eEEEEECcccccCCCCceeEEEEeCCH-----HHHHHHHHHHHhc-CCCCCHHHHHHHHhccc-----hHHHHHHHHHHH
Confidence            999999999986543   399988642     5666655432111 11223222222222222     245667788889


Q ss_pred             HHHHHHHHHHCC--cE-eeeCC--------------C--C-CeeEEecCCCCCCCHHHHHHHHhhcCeEEccC------C
Q 013217          301 CRALASRLVELG--YK-LVSGG--------------S--D-NHLVLVDLRPMGIDGARVEKILDMASITLNKN------S  354 (447)
Q Consensus       301 ~~~l~~~L~~~g--~~-~~~~~--------------~--~-~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~------~  354 (447)
                      ++.+.+.|.+.+  +. +..++              .  . ..++.+.+.....+...+...|...++.++.+      .
T Consensus       264 ~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~l~~l~~~~~~~s~G~~~s~~~  343 (393)
T 1n8p_A          264 ANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLE  343 (393)
T ss_dssp             HHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCCSSCEEE
T ss_pred             HHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHHHhhCCcceECCCCCCCcceee
Confidence            999999987743  32 21111              0  1 33455555421012233334444445555433      1


Q ss_pred             CCCCCC------------CCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          355 VPGDKS------------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       355 ~p~~~~------------~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                      .|....            ....+.||+|++..++    +++++.+.++|+++
T Consensus       344 ~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~----~~~i~~l~~al~~~  391 (393)
T 1n8p_A          344 VPAVMTHGGIPKEAREASGVFDDLVRISVGIEDT----DDLLEDIKQALKQA  391 (393)
T ss_dssp             CTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCH----HHHHHHHHHHHHHH
T ss_pred             ccccccccccCHHHHHhcCCCCCeEEEEEccCCH----HHHHHHHHHHHHHh
Confidence            222110            1124689999999888    99999999888754

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.87  E-value=2e-21  Score=195.94  Aligned_cols=326  Identities=17%  Similarity=0.172  Sum_probs=195.2

Q ss_pred             HHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCC----
Q 013217           34 RAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKP----  109 (447)
Q Consensus        34 ~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~p----  109 (447)
                      +.|.+++...+..    |.   ..|+......+++    +++++++|.+.     .+.++||++|+..++.+++++    
T Consensus        53 ~~v~~a~~~~l~~----~~---~~y~~~~~~~~l~----~~la~~~~~~~-----v~~t~~gt~A~~~al~~~~~~~~~~  116 (467)
T 2oqx_A           53 GAVTQSMQAAMMR----GD---EAYSGSRSYYALA----ESVKNIFGYQY-----TIPTHQGRGAEQIYIPVLIKKREQE  116 (467)
T ss_dssp             SCCCHHHHHHTTS----CC---CCSSSCHHHHHHH----HHHHHHHCCSE-----EEEEC--CCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc----Cc---ceeccCchhHHHH----HHHHHHhCcCc-----EEEcCCcHHHHHHHHHHHhcccccc
Confidence            7777777666532    11   1233344445555    57888888753     234567789999999998888    


Q ss_pred             -C----CEEEEecCCCCcccCCCccccccccccccceeE----EEecccC---CCCCCCCHHHHHHHhhh---hCCcEEE
Q 013217          110 -H----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE----SMPYRLD---ESTGLVDYDMLEKTAIL---FRPKLII  174 (447)
Q Consensus       110 -g----d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~---~~~~~id~~~l~~~~~~---~~~klii  174 (447)
                       |    |+|++. ..|+..+..       .....+....    ...++.+   +.++.+|+++|++++++   .++++|+
T Consensus       117 ~G~~~~d~Ii~~-~~h~~t~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi  188 (467)
T 2oqx_A          117 KGLDRSKMVAFS-NYFFDTTQG-------HSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIV  188 (467)
T ss_dssp             HCCCTTTCEEEE-SSCCHHHHH-------HHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEE
T ss_pred             CCCCccceEEec-ccccccchh-------hhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEE
Confidence             8    997765 444221000       0001111100    0011111   13467899999999985   3789999


Q ss_pred             EcCCCCC--C-CC---ChHHHHHHHHHhCCEEEEehhhhc-ccc--------ccccCCCCC-----CcccEEEeCCCccc
Q 013217          175 AGASAYP--R-DF---DYPRMRQIADAVGALLMMDMAHIS-GLV--------AASVVADPF-----KYCDVVTTTTHKSL  234 (447)
Q Consensus       175 ~~~~~~~--~-~~---~~~~i~~ia~~~g~~livD~a~~~-g~~--------~~~~~~~~~-----~~~Di~~~s~~K~l  234 (447)
                      +++++|+  + ..   ++++|+++|++||+++|+|++|+. +..        ..+.....+     .++|++++|+||++
T Consensus       189 ~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~  268 (467)
T 2oqx_A          189 ATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDA  268 (467)
T ss_dssp             EESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTT
T ss_pred             EeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEeccccc
Confidence            9877665  3 33   478999999999999999988766 321        122111011     23688899999999


Q ss_pred             CCCCCceEEeecCCcchhh-HH---HHhhhcc--CCC--CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHH
Q 013217          235 RGPRGGMIFFKKDPVLGVE-LE---SAINNAV--FPG--LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALAS  306 (447)
Q Consensus       235 ~Gp~gG~i~~~~~~~~~~~-~~---~~i~~~~--~~~--~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~  306 (447)
                      +.|.||++++++      + +.   .++....  ..+  ..++.....++++..+++....   ++..++..++++.+.+
T Consensus       269 g~~~Gg~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~---~~~~~~~~~~~~~l~~  339 (467)
T 2oqx_A          269 MVPMGGLLCMKD------DSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMN---LDWLAYRIAQVQYLVD  339 (467)
T ss_dssp             CCSSCEEEEECS------GGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred             CCCCceEEEecC------hhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhh---HHHHHHHHHHHHHHHH
Confidence            777688888876      4 22   3332211  111  1233333444444444343322   1235556788899999


Q ss_pred             HHHHCCcEeeeCCCCCeeEEecCCC--CCCC-----HHHHHHHH-hhcCeEEccCCC------C--CCCCCCCCCeEEEe
Q 013217          307 RLVELGYKLVSGGSDNHLVLVDLRP--MGID-----GARVEKIL-DMASITLNKNSV------P--GDKSALVPGGIRIG  370 (447)
Q Consensus       307 ~L~~~g~~~~~~~~~~~~~~v~~~~--~~~~-----~~~~~~~L-~~~gI~v~~~~~------p--~~~~~~~~~~iRig  370 (447)
                      .|.+.|+++. + ...+++++++..  .+.+     ...+.+.| .++||.+.....      |  +...+...+.+|++
T Consensus       340 ~L~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~  417 (467)
T 2oqx_A          340 GLEEIGVVCQ-Q-AGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLT  417 (467)
T ss_dssp             HHHHTTCCEE-E-ECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEC
T ss_pred             HHHHCCCeee-c-CCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEE
Confidence            9988888766 3 335566777631  1223     33457777 889999865211      1  00011123689999


Q ss_pred             cCcc-ccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          371 SPAM-TTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       371 ~~~~-~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      ++.. ++    ++|++++++.|++++...
T Consensus       418 ~~~~~~t----~e~i~~~~~~l~~~l~~~  442 (467)
T 2oqx_A          418 IPRATYT----QTHMDFIIEAFKHVKENA  442 (467)
T ss_dssp             CCTTTSC----HHHHHHHHHHHHHHHHSG
T ss_pred             ecCCCCC----HHHHHHHHHHHHHHHhhh
Confidence            8876 66    999999999999988753

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.87  E-value=3.6e-21  Score=190.78  Aligned_cols=328  Identities=16%  Similarity=0.129  Sum_probs=200.3

Q ss_pred             hcCeeEecCCC-------CCCHHHHHHHhhhhhcc-CCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CCCcccee
Q 013217           20 FKSLELIASEN-------FTSRAVMEAVGSCLTNK-YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVN   89 (447)
Q Consensus        20 ~~~i~l~~~~n-------~~~~~v~~a~~~~~~~~-~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~~~~~   89 (447)
                      +..++|..+..       ++++.+.+++...+... ...+|..      .....++++...+++...+|.  +++++ +.
T Consensus        30 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~------~~g~~~lr~~la~~~~~~~~~~~~~~~v-~~  102 (412)
T 1ajs_A           30 PRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLP------ILGLAEFRTCASRLALGDDSPALQEKRV-GG  102 (412)
T ss_dssp             TTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCC------TTCCHHHHHHHHHHHHCTTCHHHHTTCE-EE
T ss_pred             CCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCC------CCCCHHHHHHHHHHHhcCCCCccCCCcE-EE
Confidence            35678876651       45689999988766221 1122321      111234543333333222222  34432 21


Q ss_pred             eecCCcHHHHHHHH--HHhcCCC-----CEEEEecCCCCcccCCCccccccccccccceeE-EEecccCC-CCCCCCHHH
Q 013217           90 VQPLSGSPANFEVY--TAILKPH-----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE-SMPYRLDE-STGLVDYDM  160 (447)
Q Consensus        90 v~~~sGs~a~~~~~--~al~~pg-----d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~-~~~~id~~~  160 (447)
                      +++++|++|+..++  .++++||     |+|++.+|.|.++..        .+...|.  + ++.+++++ +++.+|+++
T Consensus       103 ~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~~d~~~  172 (412)
T 1ajs_A          103 VQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNG--------VFTTAGF--KDIRSYRYWDTEKRGLDLQG  172 (412)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHH--------HHHHTTC--SCEEEEECEETTTTEECHHH
T ss_pred             EECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHH--------HHHHcCC--ceeEEEeeecCCCCccCHHH
Confidence            22455668998885  3557899     999999998877532        2234454  3 44444421 457899999


Q ss_pred             HHHHhhhh--CCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccc---cC-C-CCC---CcccE
Q 013217          161 LEKTAILF--RPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAAS---VV-A-DPF---KYCDV  225 (447)
Q Consensus       161 l~~~~~~~--~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~---~~-~-~~~---~~~Di  225 (447)
                      +++++++.  ++++|+++.++||+  ..+   +++|.++|+++|+++|+|++|. ++...+   .. + ..+   ...++
T Consensus       173 l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~-~~~~~~~~~~~~~~~~~~~~~~~~i  251 (412)
T 1ajs_A          173 FLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQ-GFASGNLEKDAWAIRYFVSEGFELF  251 (412)
T ss_dssp             HHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCT-TTTTSCHHHHTHHHHHHHHTTCCEE
T ss_pred             HHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccc-cccCCcccccchHHHHHhccCCcEE
Confidence            99998764  45677778788875  433   5689999999999999999963 333221   00 0 001   11248


Q ss_pred             EEeCCCcccC--CCCCceEEe---ecCCcchhh----HHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc-----ChhHH
Q 013217          226 VTTTTHKSLR--GPRGGMIFF---KKDPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-----SPEFK  291 (447)
Q Consensus       226 ~~~s~~K~l~--Gp~gG~i~~---~~~~~~~~~----~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~-----~~~~~  291 (447)
                      ++.|+||+++  |.|.|++++   ++      +    +.+.+...... ..++++....++...+++...     ....+
T Consensus       252 ~~~s~sK~~~~~G~riG~~~~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  324 (412)
T 1ajs_A          252 CAQSFSKNFGLYNERVGNLTVVAKEP------DSILRVLSQMQKIVRV-TWSNPPAQGARIVARTLSDPELFHEWTGNVK  324 (412)
T ss_dssp             EEEECTTTSCCGGGCEEEEEEECSSH------HHHHHHHHHHHHHHHT-TTSSCCSHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             EEEecccccCCCCcceEEEEEecCCH------HHHHHHHHHHHHHHhc-ccCCCChHHHHHHHHHHcCcchhHHHHHHHH
Confidence            8999999874  555699998   54      4    33333331111 123334444445555665431     12456


Q ss_pred             HHHHHHHHHHHHHHHHHHHCC----cEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeE
Q 013217          292 VYQNKVVSNCRALASRLVELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGI  367 (447)
Q Consensus       292 ~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~i  367 (447)
                      +..+++.++++.+.+.|.+.+    +++..+ ..+.+.|+.+     +...+...|.++||.+..             ++
T Consensus       325 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~l~~~gv~v~~-------------~~  385 (412)
T 1ajs_A          325 TMADRILSMRSELRARLEALKTPGTWNHITD-QIGMFSFTGL-----NPKQVEYLINQKHIYLLP-------------SG  385 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCSSCCHHHHH-CCSSEEECCC-----CHHHHHHHHHTTCEECCT-------------TS
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCCCeeEEcC-CCceEEEeCC-----CHHHHHHHHHhCCEEecC-------------Cc
Confidence            777888899999999998865    665443 2244455543     356677788899999842             37


Q ss_pred             EEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          368 RIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       368 Rig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      |+++... +    +++++++++.|+++++
T Consensus       386 Ris~~~~-~----~~~i~~~~~~l~~~l~  409 (412)
T 1ajs_A          386 RINMCGL-T----TKNLDYVATSIHEAVT  409 (412)
T ss_dssp             EEEGGGC-C----TTTHHHHHHHHHHHHH
T ss_pred             EEEeeeC-C----HHHHHHHHHHHHHHHH
Confidence            9987632 4    7899999999988875

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.86  E-value=1.5e-20  Score=185.93  Aligned_cols=312  Identities=17%  Similarity=0.095  Sum_probs=200.8

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcC---
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK---  108 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~---  108 (447)
                      .+|.+.+++.+.+...+  .+ +.. + ..+...++    ++++++++|.+.     .+.+++|++|+..++.+++.   
T Consensus        56 ~~p~v~~a~~~~~~~~~--~~-~~~-~-~~~~~~~l----~~~la~~~~~~~-----v~~~~gg~~a~~~al~~~~~~~~  121 (406)
T 4adb_A           56 AHPELREALNEQASKFW--HT-GNG-Y-TNEPVLRL----AKKLIDATFADR-----VFFCNSGAEANEAALKLARKFAH  121 (406)
T ss_dssp             TCHHHHHHHHHHHTTCS--CC-CTT-S-CCHHHHHH----HHHHHHHSSCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcc--cc-cCC-c-CCHHHHHH----HHHHHhhCCCCe-----EEEeCcHHHHHHHHHHHHHHHHH
Confidence            37999999988775421  11 111 1 22333334    468889998762     23456777999999988764   


Q ss_pred             ----CC-CEEEEecCCCCcccCCCccccccccccccc----------eeEEEecccCCCCCCCCHHHHHHHhhhhCCcEE
Q 013217          109 ----PH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSI----------YFESMPYRLDESTGLVDYDMLEKTAILFRPKLI  173 (447)
Q Consensus       109 ----pg-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~----------~~~~~~~~~~~~~~~id~~~l~~~~~~~~~kli  173 (447)
                          +| |+|++.++.|.+.....       ....+.          ...+..++      ..|+++|++++++ ++++|
T Consensus       122 ~~~~~g~~~vi~~~~~y~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~l~~-~~~~v  187 (406)
T 4adb_A          122 DRYGSHKSGIVAFKNAFHGRTLFT-------VSAGGQPAYSQDFAPLPADIRHAA------YNDINSASALIDD-STCAV  187 (406)
T ss_dssp             HHTCTTCCEEEEETTCCCCSSHHH-------HHHSSCGGGTGGGCSCCSSEEEEC------TTCHHHHHTTCST-TEEEE
T ss_pred             hcCCCCCcEEEEECCCcCCCcHHH-------hhccCCccccccCCCCCCCceEeC------CCcHHHHHHHhcC-CeEEE
Confidence                66 99999998876653110       011110          00111111      1489999999875 89999


Q ss_pred             EEcCCCCCC--CC-----ChHHHHHHHHHhCCEEEEehhhhccccccccCC--CCCC-cccEEEeCCCcccC-CCCCceE
Q 013217          174 IAGASAYPR--DF-----DYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPRGGMI  242 (447)
Q Consensus       174 i~~~~~~~~--~~-----~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~--~~~~-~~Di~~~s~~K~l~-Gp~gG~i  242 (447)
                      +++ |+||+  ..     ++++|.++|++||+++|+|++|+ |+...+...  ...+ ..|++++  ||+++ |.|+|++
T Consensus       188 ~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~d~~t~--sK~~~~G~r~G~~  263 (406)
T 4adb_A          188 IVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQT-GVGRTGELYAYMHYGVTPDLLTT--AKALGGGFPVGAL  263 (406)
T ss_dssp             EEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSHHHHHTCCCSEEEE--CGGGGTTSCCEEE
T ss_pred             EEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCccchhHHHHhcCCCCCEEEe--chhhcCCCCeEEE
Confidence            998 56653  32     57899999999999999999985 543322110  0001 2577754  89985 5578999


Q ss_pred             EeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCc--EeeeC-C
Q 013217          243 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGY--KLVSG-G  319 (447)
Q Consensus       243 ~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~--~~~~~-~  319 (447)
                      ++++      ++.+.+......+.. +++....++...+++.+..   +++.+++.++++++.+.|++.+.  ..... .
T Consensus       264 ~~~~------~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  333 (406)
T 4adb_A          264 LATE------ECARVMTVGTHGTTY-GGNPLASAVAGKVLELINT---PEMLNGVKQRHDWFVERLNTINHRYGLFSEVR  333 (406)
T ss_dssp             EECH------HHHHTCCTTSSCCSS-TTCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred             EEcH------HHHhhhccCCcCCCC-CCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCceEEE
Confidence            9888      777776654332222 3455555566667776543   45677888888899888876321  11111 0


Q ss_pred             CCCeeEEecCCCC-CCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          320 SDNHLVLVDLRPM-GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       320 ~~~~~~~v~~~~~-~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      ....++++.+... ..+..++.+.|.++||.+...         ..+.+|++++..++    ++|++++++.|+++++..
T Consensus       334 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~---------~~~~iRi~~~~~~~----~e~i~~~~~~l~~~l~~~  400 (406)
T 4adb_A          334 GLGLLIGCVLNADYAGQAKQISQEAAKAGVMVLIA---------GGNVVRFAPALNVS----EEEVTTGLDRFAAACEHF  400 (406)
T ss_dssp             EETTEEEEEECTTTTTCHHHHHHHHHHTTEECEES---------STTEEEECCCTTCC----HHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEEEeCCcHHHHHHHHHHHHHCCcEEeec---------CCCeEEEECCCCCC----HHHHHHHHHHHHHHHHHH
Confidence            1233455655431 125678888898899998642         14689998877776    999999999999988754

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.86  E-value=7.2e-21  Score=187.57  Aligned_cols=327  Identities=15%  Similarity=0.134  Sum_probs=195.6

Q ss_pred             cCeeEecCC---C----CCCHHHHHHHhh-hhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CCCccceee
Q 013217           21 KSLELIASE---N----FTSRAVMEAVGS-CLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNV   90 (447)
Q Consensus        21 ~~i~l~~~~---n----~~~~~v~~a~~~-~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~~~~~v   90 (447)
                      +.|+|..+.   +    ++++.|++++.. .+.+....+|+..   .|   ..++.+...+++....+.  +++.+  +|
T Consensus        27 ~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~---~g---~~~lr~~la~~~~~~~~~~~~~~~~--~i   98 (397)
T 3fsl_A           27 DKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPM---EG---LNCYRHAIAPLLFGADHPVLKQQRV--AT   98 (397)
T ss_dssp             CCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCT---TC---CHHHHHHHHHHHHCTTCHHHHTTCE--EE
T ss_pred             CeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCC---Cc---hHHHHHHHHHHHhcCCcccccccce--EE
Confidence            458887662   2    234899999988 7654222344332   11   233443333344333221  33310  23


Q ss_pred             ecCCcH-HHHHHH--HHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC-CCCCCCCHHHHHHHhh
Q 013217           91 QPLSGS-PANFEV--YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-ESTGLVDYDMLEKTAI  166 (447)
Q Consensus        91 ~~~sGs-~a~~~~--~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~id~~~l~~~~~  166 (447)
                      .+++|+ +|+..+  +.++++|||+|++..|.|.++..        .+...|.  +++.+++. ++++.+|++++++.++
T Consensus        99 ~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~l~  168 (397)
T 3fsl_A           99 IQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVA--------IFAGAGF--EVSTYPWYDEATNGVRFNDLLATLK  168 (397)
T ss_dssp             EEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHH--------HHHHTTC--CEEEECCEETTTTEECHHHHHHHHT
T ss_pred             EEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHH--------HHHHcCC--ceEEEeeeeccCCcCcHHHHHHHHH
Confidence            335554 888888  45678999999999988876531        2334454  44454452 2467899999999997


Q ss_pred             hh--CCcEEEEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccc-cCCCC------CCcccEEEeCCCc
Q 013217          167 LF--RPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAAS-VVADP------FKYCDVVTTTTHK  232 (447)
Q Consensus       167 ~~--~~klii~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~-~~~~~------~~~~Di~~~s~~K  232 (447)
                      ++  ++++++++.++||+  ..   ++++|.++|+++|+++++|++|. ++...+ ....+      .....+++.|++|
T Consensus       169 ~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK  247 (397)
T 3fsl_A          169 TLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQ-GFGAGMEEDAYAIRAIASAGLPALVSNSFSK  247 (397)
T ss_dssp             TCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT-TSSSCTTGGGHHHHHHHHTTCCEEEEEECTT
T ss_pred             hCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCch-hhccCcccccHHHHHHHhcCCCEEEEecccc
Confidence            42  56788888778775  44   45699999999999999999974 333221 00000      0124588899999


Q ss_pred             ccC--CCCCceEEeecCCcchhhHHHHhh----hccCCCCCCCCcHHHHHHHHHHHHHh-----cChhHHHHHHHHHHHH
Q 013217          233 SLR--GPRGGMIFFKKDPVLGVELESAIN----NAVFPGLQGGPHNHTIGGLAVCLKHA-----QSPEFKVYQNKVVSNC  301 (447)
Q Consensus       233 ~l~--Gp~gG~i~~~~~~~~~~~~~~~i~----~~~~~~~~g~p~~~~~aal~~al~~~-----~~~~~~~~~~~~~~~~  301 (447)
                      +++  |.|.|+++......   +..+.+.    ...... .++++....++++.++...     .....++..+++.+++
T Consensus       248 ~~~~~G~riG~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~  323 (397)
T 3fsl_A          248 IFSLYGERVGGLSVMCEDA---EAAGRVLGQLKATVRRN-YSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMR  323 (397)
T ss_dssp             TTTCGGGCCEEEEEECSSH---HHHHHHHHHHHHHHHTT-TSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCcCCCeeEEEEecCCH---HHHHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            874  77779987632100   3333221    111111 2233333333333333311     0123466778888999


Q ss_pred             HHHHHHHHHC----CcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccC
Q 013217          302 RALASRLVEL----GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTR  377 (447)
Q Consensus       302 ~~l~~~L~~~----g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~  377 (447)
                      +.+.+.|.+.    |+.+..+ ....+.|+++     +.+.+.+.|+++||.+..    +        + |+++...+  
T Consensus       324 ~~l~~~L~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~----g--------~-Ris~~~~~--  382 (397)
T 3fsl_A          324 QELVKVLSTEMPERNFDYLLN-QRGMFSYTGL-----SAAQVDRLREEFGVYLIA----S--------G-RMCVAGLN--  382 (397)
T ss_dssp             HHHHHHHHHHCTTSCCTHHHH-CCSSEEECCC-----CHHHHHHHHHTTCEECCT----T--------C-EEEGGGCC--
T ss_pred             HHHHHHHHhcCCCCCceeecC-CceEEEecCC-----CHHHHHHHHHhCCEEECC----C--------C-eEEEEecC--
Confidence            9999999885    6665543 2244555554     457788889999999842    2        1 88875433  


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 013217          378 GFSEKEFVAIADFIHEG  394 (447)
Q Consensus       378 g~~~~di~~l~~~i~~~  394 (447)
                         +++++++++.|+++
T Consensus       383 ---~~~i~~~~~~l~~~  396 (397)
T 3fsl_A          383 ---TANVQRVAKAFAAV  396 (397)
T ss_dssp             ---TTTHHHHHHHHHHH
T ss_pred             ---HhhHHHHHHHHHhh
Confidence               57799999998765

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.86  E-value=3e-20  Score=186.37  Aligned_cols=328  Identities=17%  Similarity=0.176  Sum_probs=195.6

Q ss_pred             CeeEecCCC-------CCCHHHHHHHhhhhh--ccCCCCCCCCcccCchhHHHHHHHHHHHHHHHH-cCCC-----CCcc
Q 013217           22 SLELIASEN-------FTSRAVMEAVGSCLT--NKYSEGLPGKRYYGGNEYIDELETLCQKRALAA-FNLD-----ENKW   86 (447)
Q Consensus        22 ~i~l~~~~n-------~~~~~v~~a~~~~~~--~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~-~g~~-----~~~~   86 (447)
                      .|+|-.+..       ++.+++.+++.....  .....+|+..   .|   ..++.    +.++++ +|.+     ++++
T Consensus        51 ~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~---~G---~~~lr----~~ia~~l~g~~~~~~~~~~i  120 (448)
T 3meb_A           51 KVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPV---AG---FPLFL----EAAQFLMFGKDSKAAQEGRI  120 (448)
T ss_dssp             CEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCT---TC---CHHHH----HHHHHHHHCTTCHHHHTTCE
T ss_pred             eEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCC---cc---hHHHH----HHHHHHhcCCCccccCcCcE
Confidence            477754332       356888888665541  1122233322   12   23343    334444 3776     3443


Q ss_pred             ceeeecCCcHHHHHH--HHHHhcCCCCEEEEecCCCCcccCCCccccccccc----cccceeEEEeccc-CCC-CCCCCH
Q 013217           87 GVNVQPLSGSPANFE--VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVS----GTSIYFESMPYRL-DES-TGLVDY  158 (447)
Q Consensus        87 ~~~v~~~sGs~a~~~--~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~-~~~-~~~id~  158 (447)
                       +.+++++|++|+..  .+.+++.|||+|++.+|.|.++..        .+.    ..|.  +++.+++ +++ ++.+|+
T Consensus       121 -~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~--------~~~~~~~~~G~--~v~~~~~~~~~~~~~~d~  189 (448)
T 3meb_A          121 -ASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYG--------IYDKVFNKLKV--PYKEYTYLRKDGELEIDF  189 (448)
T ss_dssp             -EEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHH--------HHHHHHCTTTS--CCEEECCBCTTSCSSBCH
T ss_pred             -EEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHH--------HHHhhHHhCCC--eEEEEeccccccCCCcCH
Confidence             33445666788866  566778999999999999877642        233    4454  4555556 544 588999


Q ss_pred             HHHHHHhhh--hCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccC--CCCC------Ccc
Q 013217          159 DMLEKTAIL--FRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPF------KYC  223 (447)
Q Consensus       159 ~~l~~~~~~--~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~--~~~~------~~~  223 (447)
                      +++++.+++  .++++++++.++||+  ..+   +++|+++|+++|+++++|+++ .++...+..  ..++      ...
T Consensus       190 e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay-~~~~~~~~~~~~~~~~~~~~~~~~  268 (448)
T 3meb_A          190 SNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAY-QGFATGSFEADAFAVRMFVDAGVE  268 (448)
T ss_dssp             HHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESC-TTTSSSCHHHHTHHHHHHHHTTCC
T ss_pred             HHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEeccc-ccccCCCcccCchhHHHHhhcCCc
Confidence            999999975  246777778788886  445   566999999999999999996 343333210  0001      113


Q ss_pred             cEEEeCCCccc--CCCCCceE--Ee--------ecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc-----
Q 013217          224 DVVTTTTHKSL--RGPRGGMI--FF--------KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-----  286 (447)
Q Consensus       224 Di~~~s~~K~l--~Gp~gG~i--~~--------~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~-----  286 (447)
                      .+++.|+||++  .|.|.|++  ++        .++ ....++.+.+....... .++++.....+.+.++....     
T Consensus       269 ~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~l~~~~  346 (448)
T 3meb_A          269 VLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNK-ALSAAMVSGMTLQIRKT-WSMSAIHGAYIVQVIVHDKRLLQMF  346 (448)
T ss_dssp             EEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHH-HHHHHHHHHHHHHHHTT-TSSCCHHHHHHHHHHHTSHHHHHHH
T ss_pred             EEEEecccccCCCccccceeeeeeeccccccccCCH-HHHHHHHHHHHHHHhcc-cCCccHHHHHHHHHHhcChHHHHHH
Confidence            47789999987  46777987  55        331 00001333333222222 22344444333333433210     


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHCCc---------EeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCC
Q 013217          287 SPEFKVYQNKVVSNCRALASRLVELGY---------KLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPG  357 (447)
Q Consensus       287 ~~~~~~~~~~~~~~~~~l~~~L~~~g~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~  357 (447)
                      ....++..+++.++++.+.+.|.+.|+         .+..+ ....+.|+++     +.+.+..+|+++||.+..    |
T Consensus       347 ~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~-----~~~~~~~ll~~~gV~v~~----G  416 (448)
T 3meb_A          347 YDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILT-AIGMFTFTGL-----TPEHVDYLKEKWSIYLVK----A  416 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHH-CCSSEEECCC-----CHHHHHHHHHHHCEEECS----G
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCC-CceEEEecCC-----CHHHHHHHHHhCCEEEeC----C
Confidence            022466678888899999999988643         22222 2234455444     356666777889999943    2


Q ss_pred             CCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          358 DKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       358 ~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      .        .||++..++     +++++++++.|+++++
T Consensus       417 ~--------gRis~a~~~-----~~~i~~~~~~l~~~l~  442 (448)
T 3meb_A          417 G--------GRMSMCGLT-----ESNCDYVAEAIHDAVT  442 (448)
T ss_dssp             G--------GEEEGGGCC-----TTTHHHHHHHHHHHHH
T ss_pred             C--------cEEEEecCC-----HHHHHHHHHHHHHHHH
Confidence            1        388875434     5679999999999886

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.86  E-value=1.8e-20  Score=184.93  Aligned_cols=308  Identities=14%  Similarity=0.094  Sum_probs=197.1

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcC---
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK---  108 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~---  108 (447)
                      .+|.+.+++.+.+.+ +.  +.+.. | ..+...++    ++++++++|.+.     .+.+++|++|+..++.++..   
T Consensus        57 ~~~~v~~a~~~~~~~-~~--~~~~~-~-~~~~~~~l----~~~la~~~g~~~-----v~~~~gg~~a~~~al~~~~~~~~  122 (397)
T 2ord_A           57 SHPRLVEAIKDQAEK-LI--HCSNL-F-WNRPQMEL----AELLSKNTFGGK-----VFFANTGTEANEAAIKIARKYGK  122 (397)
T ss_dssp             TCHHHHHHHHHHHHH-CS--CCCTT-S-EEHHHHHH----HHHHHHTTTSCE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHh-cc--cCccc-c-CCHHHHHH----HHHHHHhcCCCe-----EEEeCCHHHHHHHHHHHHHHHhh
Confidence            479999999888764 22  21111 2 22333444    467888888532     23456778999998888753   


Q ss_pred             ---C-CCEEEEecCCCCcccCCCccccccccccccce-----e-----EEEecccCCCCCCCCHHHHHHHhhhhCCcEEE
Q 013217          109 ---P-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----F-----ESMPYRLDESTGLVDYDMLEKTAILFRPKLII  174 (447)
Q Consensus       109 ---p-gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~-----~-----~~~~~~~~~~~~~id~~~l~~~~~~~~~klii  174 (447)
                         | +|+|++.++.+.+....       .+...|..     +     .++.++.      .|+++|++++++ ++++|+
T Consensus       123 ~~~~~~~~vi~~~~~yh~~~~~-------~~~~~g~~~~~~~~~p~~~~~~~~~~------~d~~~l~~~l~~-~~~~v~  188 (397)
T 2ord_A          123 KKSEKKYRILSAHNSFHGRTLG-------SLTATGQPKYQKPFEPLVPGFEYFEF------NNVEDLRRKMSE-DVCAVF  188 (397)
T ss_dssp             HHCTTCCEEEEEBTCCCCSSHH-------HHHHSBCHHHHGGGCSCCTTEEEECT------TCHHHHHHHCCT-TEEEEE
T ss_pred             cCCCCCceEEEEcCCcCCCchh-------hhhccCChhhccccCCCCCCeeEecC------CCHHHHHHHhhc-CeEEEE
Confidence               5 47899888776443210       11222221     0     0222222      389999999986 899999


Q ss_pred             EcCCCCCC-C-----CChHHHHHHHHHhCCEEEEehhhhccccccccCCCCC---C-cccEEEeCCCcccC-CCCCceEE
Q 013217          175 AGASAYPR-D-----FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K-YCDVVTTTTHKSLR-GPRGGMIF  243 (447)
Q Consensus       175 ~~~~~~~~-~-----~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~---~-~~Di~~~s~~K~l~-Gp~gG~i~  243 (447)
                      +++++||+ .     .++++|.++|+++|+++++|++|. |+...+. ..++   + ..|++  |++|+++ |.|.|+++
T Consensus       189 ~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~-~~~~~~~~~~~d~~--s~sK~~~~G~r~G~~~  264 (397)
T 2ord_A          189 LEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQC-GMGRTGK-LFAYQKYGVVPDVL--TTAKGLGGGVPIGAVI  264 (397)
T ss_dssp             ECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSS-SSHHHHHTCCCSEE--EECGGGGTTSCCEEEE
T ss_pred             EecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc-CCccCcc-chhhhhhCCCCCee--eeccccCCCcCeEEEE
Confidence            98777774 3     368999999999999999999985 6543321 1111   1 25777  4479986 45679999


Q ss_pred             eecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC--CcEeeeC-CC
Q 013217          244 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVSG-GS  320 (447)
Q Consensus       244 ~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~-~~  320 (447)
                      +++      ++. .+....... ..+++....++...+++.+..   ++..+++.++++++.+.|++.  +++++.. ..
T Consensus       265 ~~~------~~~-~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~  333 (397)
T 2ord_A          265 VNE------RAN-VLEPGDHGT-TFGGNPLACRAGVTVIKELTK---EGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRG  333 (397)
T ss_dssp             ECS------TTC-CCCTTSSCC-SSTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred             Ech------Hhc-ccCCCCcCC-CCCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHhCCceEEEEE
Confidence            887      443 443211111 223455555666667776553   345677888888888888764  3432210 01


Q ss_pred             CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          321 DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       321 ~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      ...++++++.. ..+..++.+.|.++||.+..+         .++.+|++++..++    ++|++++++.|+++++
T Consensus       334 ~g~~~~~~~~~-~~~~~~l~~~l~~~gi~v~~~---------~~~~iRis~~~~~~----~e~i~~~~~~l~~~l~  395 (397)
T 2ord_A          334 MGLMIGIQFRE-EVSNREVATKCFENKLLVVPA---------GNNTIRFLPPLTVE----YGEIDLAVETLKKVLQ  395 (397)
T ss_dssp             ETTEEEEEECT-TSCHHHHHHHHHHTTEECEEE---------TTTEEEECCCTTCC----HHHHHHHHHHHHHHHH
T ss_pred             EeEEEEEEECC-hHHHHHHHHHHHHCCCEEccC---------CCCEEEEECCcCCC----HHHHHHHHHHHHHHHh
Confidence            23455666643 235778888888899998542         14589999876666    9999999999988765

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.86  E-value=3e-21  Score=190.25  Aligned_cols=330  Identities=15%  Similarity=0.141  Sum_probs=196.7

Q ss_pred             hcCeeEecCC---C----CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC--CCCCccceee
Q 013217           20 FKSLELIASE---N----FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNV   90 (447)
Q Consensus        20 ~~~i~l~~~~---n----~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g--~~~~~~~~~v   90 (447)
                      +..|+|..+.   +    +.++.+.+++...+.+....+|..      .....++++...+++.+..+  ++++++ +.+
T Consensus        26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~------~~g~~~lr~~la~~~~~~~~~~~~~~~v-~~~   98 (396)
T 2q7w_A           26 PGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLG------IDGIPEFGRCTQELLFGKGSALINDKRA-RTA   98 (396)
T ss_dssp             --CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCC------TTCCHHHHHHHHHHHHCTTCHHHHTTCE-EEE
T ss_pred             CCceecccccccCCCCCccCcHHHHHHHHhhcCcccccCCCC------CCCCHHHHHHHHHHHhcCCCCccccccE-EEE
Confidence            3567887665   1    456999999987765321223321      11123444333333322212  124432 111


Q ss_pred             ecCCcHHHHHHHHHHh--cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhh
Q 013217           91 QPLSGSPANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAIL  167 (447)
Q Consensus        91 ~~~sGs~a~~~~~~al--~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~  167 (447)
                      ++++|++|+..++.++  +.|||+|++.+|.|.++..        .+...|.  +++.+++++ +++.+|++++++.+++
T Consensus        99 ~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~l~~  168 (396)
T 2q7w_A           99 QTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKS--------VFNSAGL--EVREYAYYDAENHTLDFDALINSLNE  168 (396)
T ss_dssp             EESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHH--------HHHHTTC--EEEEEECEETTTTEECHHHHHHHHTT
T ss_pred             ecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHH--------HHHHcCC--ceEEEecccCCCCCcCHHHHHHHHHh
Confidence            2455668998888665  4799999999998877532        2334454  444544532 3578999999999875


Q ss_pred             h--CCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccc--cC-C-CCC---CcccEEEeCCCcc
Q 013217          168 F--RPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAAS--VV-A-DPF---KYCDVVTTTTHKS  233 (447)
Q Consensus       168 ~--~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~--~~-~-~~~---~~~Di~~~s~~K~  233 (447)
                      .  ++++++++.++||+  ..+   +++|.++|+++|+++++|++|.. +...+  .. + ..+   ...++++.|+||+
T Consensus       169 ~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~  247 (396)
T 2q7w_A          169 AQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQG-FARGLEEDAEGLRAFAAMHKELIVASSYSXN  247 (396)
T ss_dssp             CCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTT-SSSCHHHHTHHHHHHHHHCSCEEEEEECTTT
T ss_pred             CCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEeccccc-ccCCccchhHHHHHHHhcCCcEEEEEecccc
Confidence            3  35677778888875  443   56899999999999999999743 32211  00 0 001   1235889999998


Q ss_pred             cC--CCCCceEEe---ecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHh-----cChhHHHHHHHHHHHHHH
Q 013217          234 LR--GPRGGMIFF---KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHA-----QSPEFKVYQNKVVSNCRA  303 (447)
Q Consensus       234 l~--Gp~gG~i~~---~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~-----~~~~~~~~~~~~~~~~~~  303 (447)
                      ++  |.|.|++++   +++  ...++.+.+...... ..++++....++...+++..     .....++..+++.++++.
T Consensus       248 ~~~~G~riG~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~  324 (396)
T 2q7w_A          248 FGLYNERVGACTLVAADSE--TVDRAFSQMKAAIRA-NYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQL  324 (396)
T ss_dssp             TTCGGGCCEEEEEECSSHH--HHHHHHHHHHHHHHT-TTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHH
T ss_pred             ccccccccceEEEEcCCHH--HHHHHHHHHHHHHhh-ccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHH
Confidence            74  667799986   331  000233333321111 12334554444444454321     012345667778888999


Q ss_pred             HHHHHHHCC----cEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCC
Q 013217          304 LASRLVELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGF  379 (447)
Q Consensus       304 l~~~L~~~g----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~  379 (447)
                      +.+.|.+.|    +++..+ ..+.+.|+.+     +...+...|+++||.+..             ++|++++.. +   
T Consensus       325 l~~~L~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~l~~~gv~v~~-------------~~Ris~~~~-~---  381 (396)
T 2q7w_A          325 FVNTLQEKGANRDFSFIIK-QNGMFSFSGL-----TKEQVLRLREEFGVYAVA-------------SGRVNVAGM-T---  381 (396)
T ss_dssp             HHHHHHHTTCCSCCTHHHH-CCSSEEECCC-----CHHHHHHHHHHHCEECCT-------------TCEEEGGGC-C---
T ss_pred             HHHHHHhcCCCCCcceecC-CCceEEEecC-----CHHHHHHHHHhcCeeecC-------------CceEEEeec-C---
Confidence            999998866    655433 2244455544     346677888899999842             479997643 4   


Q ss_pred             CHHHHHHHHHHHHHH
Q 013217          380 SEKEFVAIADFIHEG  394 (447)
Q Consensus       380 ~~~di~~l~~~i~~~  394 (447)
                       ++|++++++.|+++
T Consensus       382 -~e~i~~~~~~l~~~  395 (396)
T 2q7w_A          382 -PDNMAPLCEAIVAV  395 (396)
T ss_dssp             -TTTHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhc
Confidence             78999999988765

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.86  E-value=2.2e-20  Score=185.71  Aligned_cols=311  Identities=14%  Similarity=0.118  Sum_probs=196.8

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcC---
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK---  108 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~---  108 (447)
                      .+|.+.+++.+.+.. +.  +.... + ..+...++    ++++++++|.+.     .+.++||++|+..++.++..   
T Consensus        74 ~~p~v~~ai~~~~~~-~~--~~~~~-~-~~~~~~~l----~~~la~~~g~~~-----v~~~~ggteA~~~al~~~~~~~~  139 (420)
T 2pb2_A           74 CHPALVEALKSQGET-LW--HTSNV-F-TNEPALRL----GRKLIDATFAER-----VLFMNSGTEANETAFKLARHYAC  139 (420)
T ss_dssp             TCHHHHHHHHHHHTT-CC--CCCTT-S-CCHHHHHH----HHHHHHHSSCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHh-cc--cccCc-c-CCHHHHHH----HHHHHhhCCCCe-----EEEeCCHHHHHHHHHHHHHHHhh
Confidence            479999999887754 22  11111 2 22333333    467888888542     23456778999999988765   


Q ss_pred             ----CC-CEEEEecCCCCcccCCCccccccccccccce-----e-----EEEecccCCCCCCCCHHHHHHHhhhhCCcEE
Q 013217          109 ----PH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----F-----ESMPYRLDESTGLVDYDMLEKTAILFRPKLI  173 (447)
Q Consensus       109 ----pg-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~-----~-----~~~~~~~~~~~~~id~~~l~~~~~~~~~kli  173 (447)
                          +| ++|++.++.|.+....       .+...|..     +     .+..++      ..|+++|++++++ ++++|
T Consensus       140 ~~~~~g~~~vi~~~~~yh~~~~~-------~~~~~g~~~~~~~~~p~~~~~~~~~------~~d~~~le~~i~~-~~~~v  205 (420)
T 2pb2_A          140 VRHSPFKTKIIAFHNAFHGRSLF-------TVSVGGQPKYSDGFGPKPADIIHVP------FNDLHAVKAVMDD-HTCAV  205 (420)
T ss_dssp             HHTCTTCCEEEEETTCCCCSSHH-------HHHHSSCHHHHTTSSSCCSCEEEEC------TTCHHHHHHHCCT-TEEEE
T ss_pred             hccCCCCCEEEEEeCCcCCcCHH-------HHHhcCCccccccCCCCCCCeEEec------CCCHHHHHHHhcc-CceEE
Confidence                77 4999998877554211       01112210     0     112211      1389999999986 89999


Q ss_pred             EEcCCCCCC-C-----CChHHHHHHHHHhCCEEEEehhhhccccccccCC--CCCC-cccEEEeCCCcccC-CCCCceEE
Q 013217          174 IAGASAYPR-D-----FDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPRGGMIF  243 (447)
Q Consensus       174 i~~~~~~~~-~-----~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~--~~~~-~~Di~~~s~~K~l~-Gp~gG~i~  243 (447)
                      +++++++++ .     .++++|.++|+++|+++|+|++| .|+...+...  ...+ ..|+++  ++|+++ |.+.|+++
T Consensus       206 i~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~-~g~~~~g~~~~~~~~~~~~diit--~sK~l~~G~~iG~~~  282 (420)
T 2pb2_A          206 VVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQ-CGMGRTGDLFAYMHYGVTPDILT--SAKALGGGFPVSAML  282 (420)
T ss_dssp             EECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTT-TTTTTTSSSSHHHHHTCCCSEEE--ECGGGGTTSCCEEEE
T ss_pred             EEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCC-cCcccCCcHHHHHhcCCCCCeEE--ecccccCCCceEEEE
Confidence            998655543 2     35789999999999999999998 5654333110  0011 358775  569985 45679999


Q ss_pred             eecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC--CcEeee--CC
Q 013217          244 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVS--GG  319 (447)
Q Consensus       244 ~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~--~~  319 (447)
                      +++      ++.+.+......... +.+....++..++++.+..   +++.+++.++++++.+.|++.  +++.+.  .+
T Consensus       283 ~~~------~l~~~l~~~~~~~t~-~~~~~~~aa~~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~  352 (420)
T 2pb2_A          283 TTQ------EIASAFHVGSHGSTY-GGNPLACAVAGAAFDIINT---PEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRG  352 (420)
T ss_dssp             ECH------HHHTTCC----CCEE-CCCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred             EhH------HHHHhhcCCCcCccc-CcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence            987      666655442111112 3355555555567776654   356778888888888888763  232211  11


Q ss_pred             CCCeeEEecCCCC-CCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          320 SDNHLVLVDLRPM-GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       320 ~~~~~~~v~~~~~-~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                       ...++++++... +.+..++.+.|.++||.+...    .     ++.+|++++..++    ++|++++++.|+++++.
T Consensus       353 -~g~~~~v~~~~~~~~~~~~l~~~l~~~Gi~v~~~----~-----~~~iRl~~~~~~t----~eei~~~~~~l~~~l~~  417 (420)
T 2pb2_A          353 -MGLLIGAELKPKYKGRARDFLYAGAEAGVMVLNA----G-----ADVMRFAPSLVVE----EADIHEGMQRFAQAVGK  417 (420)
T ss_dssp             -ETTEEEEEECGGGTTCHHHHHHHHHHTTEECEES----S-----TTEEEECCCTTCC----HHHHHHHHHHHHHHHHH
T ss_pred             -cceEEEEEECCCchHHHHHHHHHHHHCCCEEEeC----C-----CCEEEEECCCCCC----HHHHHHHHHHHHHHHHH
Confidence             234556666431 124677888888899998642    1     3589999886666    99999999999988764

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=99.86  E-value=2.7e-20  Score=183.68  Aligned_cols=338  Identities=16%  Similarity=0.143  Sum_probs=204.9

Q ss_pred             HHHHHHHHHHH-hhcCeeEecCC-------CCCCHHHHHHHhhhh-hccCCCCCCCCcccCchhHHHHHHHHHHHHHHHH
Q 013217            8 VCEIITKEKER-QFKSLELIASE-------NFTSRAVMEAVGSCL-TNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA   78 (447)
Q Consensus         8 ~~~~~~~e~~~-~~~~i~l~~~~-------n~~~~~v~~a~~~~~-~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~   78 (447)
                      +..+...-.+. ..+.|+|..++       .++++.|.+++. .+ ......+|+..      ....++.+.+.+++.+.
T Consensus        16 i~~~~~~~~~~~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~------~G~~~lr~aia~~~~~~   88 (405)
T 3k7y_A           16 ILKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLG------NGTEDFSTLTQNLIFGN   88 (405)
T ss_dssp             HHHHHHHHTTSSCSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTT------SSCHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHhcCCCcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCC------CCcHHHHHHHHHHHcCC
Confidence            55555443222 23568987664       245788998876 43 22212234332      12234554555566544


Q ss_pred             cCCC-CCccceeeecCCcH-HHHHHHHHHhcC--CCCEEEEecCCCCcccCCCccccccccccccceeEEEeccc-CCCC
Q 013217           79 FNLD-ENKWGVNVQPLSGS-PANFEVYTAILK--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-DEST  153 (447)
Q Consensus        79 ~g~~-~~~~~~~v~~~sGs-~a~~~~~~al~~--pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~  153 (447)
                      .+.. .++. +.+..|+|+ +|+..++.++++  | |+|++.+|.|.++..        .+...|.  +++.+++ ++++
T Consensus        89 ~~~~~~~~~-i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~--------~~~~~g~--~~~~v~~~~~~~  156 (405)
T 3k7y_A           89 NSKYIEDKK-ICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVN--------MIESRGF--NLKYINFFDYNL  156 (405)
T ss_dssp             SCTTTTTTC-EEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHH--------HHHTTTC--EEEEECCEETTT
T ss_pred             CCccccccc-eEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHH--------HHHHcCC--eEEEEecccccc
Confidence            4432 1122 123346665 899988888877  9 999999998877642        3345565  5555555 4346


Q ss_pred             CCCCHHHHHHHhhhh-CCcEEEEcCC-CCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCC--CCC----
Q 013217          154 GLVDYDMLEKTAILF-RPKLIIAGAS-AYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPF----  220 (447)
Q Consensus       154 ~~id~~~l~~~~~~~-~~klii~~~~-~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~--~~~----  220 (447)
                      +.+|++++++.+++. ++++|+++.+ +||+  ..+   +++|.++|++||+++++|+++ .++.+.+...  .++    
T Consensus       157 ~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y-~~l~~~~~~~~~~~~~~~~  235 (405)
T 3k7y_A          157 IDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAY-QGFGHTNLEEDVLLIRKFE  235 (405)
T ss_dssp             TEECHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESC-TTTSSSSTTGGGHHHHHHH
T ss_pred             CCcCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCc-ccccCCCcccchHHHHHHH
Confidence            789999999998752 4678888754 7886  444   578888999999999999985 5555432110  001    


Q ss_pred             C--cccEEEeCCCccc--CCCCCceEEe--ecCCcchhhHHHHhh----hccCCCCCCCCcHHHHHHHHHHHHHh--c--
Q 013217          221 K--YCDVVTTTTHKSL--RGPRGGMIFF--KKDPVLGVELESAIN----NAVFPGLQGGPHNHTIGGLAVCLKHA--Q--  286 (447)
Q Consensus       221 ~--~~Di~~~s~~K~l--~Gp~gG~i~~--~~~~~~~~~~~~~i~----~~~~~~~~g~p~~~~~aal~~al~~~--~--  286 (447)
                      .  ..-+++.|++|++  +|+|.|++++  .++     ++.+++.    ...... .+.++.....+.+.++..-  .  
T Consensus       236 ~~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~-----~~~~~~~~~l~~~~~~~-~~~~~~~~q~~~~~~l~~~~l~~~  309 (405)
T 3k7y_A          236 EKNIAFSVCQSFSKNMSLYGERAGALHIVCKNQ-----EEKKIVFNNLCFIVRKF-YSSPVIHTNRILCQLLNNQNLKLN  309 (405)
T ss_dssp             TTTCCEEEEEECTTTSCCTTTTEEEEEEECSSH-----HHHHHHHHHHHHHHHTT-TSSCCHHHHHHHHHHHHCHHHHHH
T ss_pred             hcCCcEEEEeeCCccCCCccccceEEEEEeCCH-----HHHHHHHHHHHHHHhcc-cCCCcHHHHHHHHHHhCCHHHHHH
Confidence            1  1237789999987  5899999864  232     4443332    211111 2233433333333344321  0  


Q ss_pred             -ChhHHHHHHHHHHHHHHHHHHHH----HCC----cEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCC
Q 013217          287 -SPEFKVYQNKVVSNCRALASRLV----ELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPG  357 (447)
Q Consensus       287 -~~~~~~~~~~~~~~~~~l~~~L~----~~g----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~  357 (447)
                       ....+++.+++.++++.+.+.|.    +.|    +++..+ ..++++|+.+.     .+.+ ..|+++||.+.    |+
T Consensus       310 ~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p-~gg~f~~~~l~-----~~~~-~~L~~~gV~v~----p~  378 (405)
T 3k7y_A          310 WIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKK-QRGLFSFVPLL-----AKIA-EHLKTHHIYII----NN  378 (405)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSS-CCSSEEECGGG-----GGGT-TTTTTTTEECC----TT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccC-CceEEEecCCC-----HHHH-HHHHHCCEeec----CC
Confidence             11235566778899999999998    766    454433 34666676653     2334 44588999983    32


Q ss_pred             CCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          358 DKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       358 ~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                              + ||++...+     +++++++++.|++++.
T Consensus       379 --------~-Ris~a~~~-----~~~i~~~~~~i~~~~~  403 (405)
T 3k7y_A          379 --------G-RINVSGIT-----KNNVDYIADKICLSLS  403 (405)
T ss_dssp             --------S-EEEGGGCC-----TTHHHHHHHHHHHHHH
T ss_pred             --------C-eEEEeccC-----HHHHHHHHHHHHHHHh
Confidence                    2 88865433     6899999999999875

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.86  E-value=1.3e-20  Score=185.40  Aligned_cols=285  Identities=15%  Similarity=0.121  Sum_probs=181.8

Q ss_pred             hhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccc
Q 013217           61 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI  140 (447)
Q Consensus        61 ~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~  140 (447)
                      ++...+++    +++++++|.+.     .+.++||++|+..++.+++++||+|++.++.|++......    ..+...|.
T Consensus        58 ~~~~~~l~----~~la~~~g~~~-----~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~----~~~~~~g~  124 (389)
T 3acz_A           58 NPTVEQFE----EMVCSIEGAAG-----SAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFT----HWLPRFGI  124 (389)
T ss_dssp             CHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHH----HHHHHTTC
T ss_pred             ChHHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHH----HHHHHcCC
Confidence            34455555    68889999872     3456899999999999999999999999998877532110    00123343


Q ss_pred             eeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCC
Q 013217          141 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD  218 (447)
Q Consensus       141 ~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~  218 (447)
                        +++.++.      .|++++++++++ ++++|++++++||+  ..|+++|.++|+++|+++++|++|..+...     .
T Consensus       125 --~~~~v~~------~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~-----~  190 (389)
T 3acz_A          125 --EVDLIDT------SDVEKVKAAWKP-NTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFL-----K  190 (389)
T ss_dssp             --EEEEECT------TCHHHHHHTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTC-----C
T ss_pred             --EEEEECC------CCHHHHHHhcCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccc-----C
Confidence              4444332      489999999987 89999998777765  789999999999999999999998766421     2


Q ss_pred             CCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHH
Q 013217          219 PFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ  294 (447)
Q Consensus       219 ~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~  294 (447)
                      |+. ++|+++.|+||+++||.   +|+++++++     ++.+.+....... .++.+....+   .++..+.  .+..+.
T Consensus       191 ~~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~-----~~~~~l~~~~~~~-g~~~~~~~~~---~~~~~l~--~l~~r~  259 (389)
T 3acz_A          191 PLELGADIALHSVSKYINGHGDVIGGVSSAKTA-----EDIATIKFYRKDA-GSLMAPMDAF---LCARGMK--TLPIRM  259 (389)
T ss_dssp             GGGTTCSEEEEETTTTTTCSSCCCCEEEEESSH-----HHHHHHHHHHHHH-CCCCCHHHHH---HHHHHHT--THHHHH
T ss_pred             ccccCCeEEEECChhhccCCCCceeEEEEECcH-----HHHHHHHHHHHhc-CCCCCHHHHH---HHHcCcc--HHHHHH
Confidence            222 58999999999998764   488888872     3555554432111 1222322221   1222222  245567


Q ss_pred             HHHHHHHHHHHHHHHHCC-cE-eeeCC---------------CCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccC----
Q 013217          295 NKVVSNCRALASRLVELG-YK-LVSGG---------------SDNHLVLVDLRPMGIDGARVEKILDMASITLNKN----  353 (447)
Q Consensus       295 ~~~~~~~~~l~~~L~~~g-~~-~~~~~---------------~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~----  353 (447)
                      ++..+++..+.+.|++.+ +. ++.++               ....++.+.+.  +  ..++.+.|.+.||.+...    
T Consensus       260 ~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~--~--~~~~~~~l~~~~i~~~~~s~G~  335 (389)
T 3acz_A          260 QIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMK--S--FEAAKKLMEHLKVCTLAVSLGC  335 (389)
T ss_dssp             HHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEES--S--HHHHHHHHTTCSSSEEBSCCCC
T ss_pred             HHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEEC--C--HHHHHHHHHhCCCcEECcCCCC
Confidence            788889999999998743 21 11111               01223344443  2  567888888888876542    


Q ss_pred             -----CCCCCCC------------CCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217          354 -----SVPGDKS------------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  391 (447)
Q Consensus       354 -----~~p~~~~------------~~~~~~iRig~~~~~~~g~~~~di~~l~~~i  391 (447)
                           ..|....            ...++.||++++..++    ++.++.+.++|
T Consensus       336 ~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~~~----~~li~~l~~al  386 (389)
T 3acz_A          336 VDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENV----DDIIADLKQAL  386 (389)
T ss_dssp             SSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSSCH----HHHHHHHHHHH
T ss_pred             cccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccCCH----HHHHHHHHHHH
Confidence                 1121100            1124689999876554    55555555444

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.86  E-value=1.3e-20  Score=186.75  Aligned_cols=336  Identities=16%  Similarity=0.151  Sum_probs=196.3

Q ss_pred             HHHHHHHHHHHh-hcCeeEecCCC---CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC-
Q 013217            8 VCEIITKEKERQ-FKSLELIASEN---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-   82 (447)
Q Consensus         8 ~~~~~~~e~~~~-~~~i~l~~~~n---~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~-   82 (447)
                      +..+...-.+.. .+.|+|..+..   ..++.+.+++.+.... ...+|..      .....++++...+++   +|.+ 
T Consensus        28 i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~a~~~a~~~-~~~~y~~------~~g~~~lr~~ia~~~---~~~~~   97 (409)
T 4eu1_A           28 ILGLGQDFRMDPAKRKVNLSIGVYRDDADQPFVLECVKQATLG-TNMDYAP------VTGIASFVEEAQKLC---FGPTC   97 (409)
T ss_dssp             HHHHHHHHHHCCCSSCEECCCSSCCCTTSCCCCCHHHHTCCCC-SCCCCCC------TTCCHHHHHHHHHHH---HCSSC
T ss_pred             HHHHHHHHhhCCCcCceeeeeeEEECCCCCEeecHHHHhcCcc-ccccCCC------CCCcHHHHHHHHHHH---cCCCc
Confidence            455554433322 34578866653   2355666666554211 1123322      111234543322332   3654 


Q ss_pred             ----CCccceeeecCCcHHHHHHH---HHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC-CCCC
Q 013217           83 ----ENKWGVNVQPLSGSPANFEV---YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-ESTG  154 (447)
Q Consensus        83 ----~~~~~~~v~~~sGs~a~~~~---~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~  154 (447)
                          ++++ ..+++.+|++++..+   +.+++++||+|++.+|.|.++..        .+...|.  +++.++++ .+++
T Consensus        98 ~~~~~~~i-~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~  166 (409)
T 4eu1_A           98 AALRDGRI-ASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHES--------IFAKAGM--ELTPYSYYDPATK  166 (409)
T ss_dssp             HHHHTTCE-EEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHH--------HHHHTTC--EEEEECCEETTTT
T ss_pred             hhhccCce-eeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHH--------HHHHcCC--eEEEEEeecCcCC
Confidence                3332 112335555666554   44567899999999998877632        2344554  55555552 3567


Q ss_pred             CCCHHHHHHHhhhh--CCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccC--CC------C
Q 013217          155 LVDYDMLEKTAILF--RPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVV--AD------P  219 (447)
Q Consensus       155 ~id~~~l~~~~~~~--~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~--~~------~  219 (447)
                      .+|++++++.+++.  ++++++++.++||+  ..+   +++|.++|+++|+++++|++|. ++...+..  ..      .
T Consensus       167 ~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~-~~~~~~~~~~~~~~~~~~~  245 (409)
T 4eu1_A          167 GLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQ-GFATGQLDYDAFVPRHLVD  245 (409)
T ss_dssp             EECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT-TTTTSCHHHHTHHHHHHHT
T ss_pred             cCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccc-ccccCCcccchHHHHHHHh
Confidence            89999999999742  45566667788886  555   5569999999999999999964 33332210  00      0


Q ss_pred             CCcccEEEeCCCccc--CCCCCceE--EeecCCcchhh----HHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc-----
Q 013217          220 FKYCDVVTTTTHKSL--RGPRGGMI--FFKKDPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-----  286 (447)
Q Consensus       220 ~~~~Di~~~s~~K~l--~Gp~gG~i--~~~~~~~~~~~----~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~-----  286 (447)
                      .....+++.|++|++  +|.|.|++  ++.++     +    +.+.+......+. .+++....++.+.+++...     
T Consensus       246 ~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~-----~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~  319 (409)
T 4eu1_A          246 MVPNLIVAQSFSKNFGLYGHRCGALHISTASA-----EEAKRLVSQLALLIRPMY-NNPPLYGAWVVSSILKDPQLTALW  319 (409)
T ss_dssp             TSSCCEEEEECTTTSSCGGGCCEEEEEECSSH-----HHHHHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHCHHHHHHH
T ss_pred             hCCcEEEEecCcccccCccCCceEEEEEeCCH-----HHHHHHHHHHHHHHhhhc-CCCChHHHHHHHHHhCCHHHHHHH
Confidence            011237889999987  46777996  55442     5    4444433211111 2233333334444554210     


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHCC----cEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCC
Q 013217          287 SPEFKVYQNKVVSNCRALASRLVELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSAL  362 (447)
Q Consensus       287 ~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~  362 (447)
                      ....++..+++.++++.+.+.|.+.|    +++..+ ..+.+.|+++     +.+.+...|+++||.+..          
T Consensus       320 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~ll~~~gv~v~p----------  383 (409)
T 4eu1_A          320 KKELKQMSSRIAEVRKRLVSELKACGSVHDWSHIER-QVGMMAYTGL-----TREQVELLRSEYHIYMTL----------  383 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHH-SCSSEEECCC-----CHHHHHHHHHHHCEECCT----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecC-CceEEEEeCC-----CHHHHHHHHHcCCEEEcC----------
Confidence            12246677888899999999999877    554432 2344555443     355666777789999842          


Q ss_pred             CCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          363 VPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       363 ~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                         +.|+++...+     ++|+++++++|++++
T Consensus       384 ---~~Ri~~~~~~-----~~~i~~~~~~l~~~l  408 (409)
T 4eu1_A          384 ---NGRAAVSGLN-----STNVEYVSQAIHNVT  408 (409)
T ss_dssp             ---TCEEEGGGCC-----TTTHHHHHHHHHHHH
T ss_pred             ---CCEEEEEecC-----HhhHHHHHHHHHHHh
Confidence               2477765444     577999999998765

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.86  E-value=9.6e-20  Score=181.30  Aligned_cols=321  Identities=15%  Similarity=0.031  Sum_probs=197.8

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCC-CccceeeecCCcHHHHHHHHH---Hhc
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE-NKWGVNVQPLSGSPANFEVYT---AIL  107 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~-~~~~~~v~~~sGs~a~~~~~~---al~  107 (447)
                      .+|.+++++...+.. +  ++....+ ...+...++    ++.++++++.+. +.   .+.+++|++|+..++.   ++.
T Consensus        58 ~~~~v~~a~~~~~~~-~--~~~~~~~-~~~~~~~~l----~~~la~~~~~~~~~~---v~~~~g~~~a~~~~~~~a~~~~  126 (426)
T 1sff_A           58 LHPKVVAAVEAQLKK-L--SHTCFQV-LAYEPYLEL----CEIMNQKVPGDFAKK---TLLVTTGSEAVENAVKIARAAT  126 (426)
T ss_dssp             TCHHHHHHHHHHTTT-C--SCCCTTT-EECHHHHHH----HHHHHHHSSCSSCEE---EEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHh-C--CCccccc-cCCHHHHHH----HHHHHHhCCcccccE---EEEeCchHHHHHHHHHHHHHhh
Confidence            579999999887754 2  1211112 222333334    467888883222 32   1333555699998887   677


Q ss_pred             CCCCEEEEecCCCCcccCCCccccccccccccc-------------eeEEEecccCC--CCCCCCHHHHHHHhhh----h
Q 013217          108 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-------------YFESMPYRLDE--STGLVDYDMLEKTAIL----F  168 (447)
Q Consensus       108 ~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~--~~~~id~~~l~~~~~~----~  168 (447)
                      ++| +|++.++.|.+....       .+...|.             .+..++++.+.  .++.+|+++|++++++    .
T Consensus       127 ~~~-~vi~~~p~y~~~~~~-------~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~  198 (426)
T 1sff_A          127 KRS-GTIAFSGAYHGRTHY-------TLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPE  198 (426)
T ss_dssp             TCC-EEEEETTCCCCSSHH-------HHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGG
T ss_pred             CCC-eEEEECCCcCCCchH-------hhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCC
Confidence            787 888888887554210       0111111             12334433210  1235799999998874    3


Q ss_pred             CCcEEEEcC-CCCCC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccC-CCC
Q 013217          169 RPKLIIAGA-SAYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLR-GPR  238 (447)
Q Consensus       169 ~~klii~~~-~~~~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~-Gp~  238 (447)
                      ++++|++++ +++++ ..+    +++|.++|++||+++|+|++|+ |+...+.. . ...+ ..|++  |++|+++ |.|
T Consensus       199 ~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~di~--s~sK~~~~Glr  275 (426)
T 1sff_A          199 DIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQS-GAGRTGTLFAMEQMGVAPDLT--TFAKSIAGGFP  275 (426)
T ss_dssp             GEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTSCCSEE--EECGGGGTSSC
T ss_pred             ceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhh-ccCcccchhhhhhcCCCCCEE--EEcccccCCCc
Confidence            678888863 34456 667    8999999999999999999986 65433211 0 0111 25766  5669985 445


Q ss_pred             CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCC--cE--
Q 013217          239 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG--YK--  314 (447)
Q Consensus       239 gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~--  314 (447)
                      .|++++++      ++.+.+....... ..+++....+++.++++.+...   ++.+++.++++.+.+.|.+.+  +.  
T Consensus       276 iG~~~~~~------~~~~~l~~~~~~~-~~~~~~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~  345 (426)
T 1sff_A          276 LAGVTGRA------EVMDAVAPGGLGG-TYAGNPIACVAALEVLKVFEQE---NLLQKANDLGQKLKDGLLAIAEKHPEI  345 (426)
T ss_dssp             CEEEEEEH------HHHTTSCTTSBCC-SSSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred             eEEEEEcH------HHHhhhccCCcCc-CCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            59999988      6766665321112 2233555556666677765432   346677788888888886632  22  


Q ss_pred             -eeeCCCCCeeEEecCCC-------CCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHH
Q 013217          315 -LVSGGSDNHLVLVDLRP-------MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVA  386 (447)
Q Consensus       315 -~~~~~~~~~~~~v~~~~-------~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~  386 (447)
                       ...+  ...++++++..       .+.+..++.+.|.++||.+..+    ..   .++.+|++++..++    ++|+++
T Consensus       346 ~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~----~~---~~~~iRi~~~~~~~----~~~i~~  412 (426)
T 1sff_A          346 GDVRG--LGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSC----GP---YYNVLRILVPLTIE----DAQIRQ  412 (426)
T ss_dssp             EEEEE--ETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEE----ST---TSCEEEECCCTTCC----HHHHHH
T ss_pred             EEEEE--EEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecC----CC---CCCEEEEECCccCC----HHHHHH
Confidence             2222  24566777642       1234566788888899998643    21   14689999886666    999999


Q ss_pred             HHHHHHHHHHH
Q 013217          387 IADFIHEGVEI  397 (447)
Q Consensus       387 l~~~i~~~l~~  397 (447)
                      +++.|+++++.
T Consensus       413 ~~~~l~~~l~~  423 (426)
T 1sff_A          413 GLEIISQCFDE  423 (426)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.86  E-value=7.2e-21  Score=187.45  Aligned_cols=321  Identities=15%  Similarity=0.146  Sum_probs=195.4

Q ss_pred             cCeeEecCC----C---CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHc-CC--CCCccceee
Q 013217           21 KSLELIASE----N---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF-NL--DENKWGVNV   90 (447)
Q Consensus        21 ~~i~l~~~~----n---~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~-g~--~~~~~~~~v   90 (447)
                      ..|+|..+.    +   ++++.+.+++...+.+....+|+..      ....++++    .+++++ +.  +++.+ +.+
T Consensus        27 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~------~g~~~lr~----~la~~~~~~~~~~~~v-~~~   95 (394)
T 2ay1_A           27 GKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGL------SGEPEFQK----AMGELILGDGLKSETT-ATL   95 (394)
T ss_dssp             TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCS------SCCHHHHH----HHHHHHHGGGCCGGGE-EEE
T ss_pred             cccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCC------CCcHHHHH----HHHHHHhCCCCCcccE-EEE
Confidence            567887666    1   3469999999877653212233321      11234443    344443 33  44432 111


Q ss_pred             ecCCcHHHHHHHHHHhc--CCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhh
Q 013217           91 QPLSGSPANFEVYTAIL--KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAIL  167 (447)
Q Consensus        91 ~~~sGs~a~~~~~~al~--~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~  167 (447)
                      ++++|++|+..++.++.  .|||+|++..|.|.++..        .+...|.  +++.+++++ +++.+|++++++++++
T Consensus        96 ~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~l~~  165 (394)
T 2ay1_A           96 ATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVS--------IMNFMGL--PVQTYRYFDAETRGVDFEGMKADLAA  165 (394)
T ss_dssp             EEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHH--------HHHHHTC--CEEEEECEETTTTEECHHHHHHHHHT
T ss_pred             ecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHH--------HHHHcCC--ceEEEecccccCCccCHHHHHHHHHh
Confidence            24556699998887764  499999999988876531        2233454  344444432 3577999999999876


Q ss_pred             h--CCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccc---cCC-CCCC--c-ccEEEeCCCcc
Q 013217          168 F--RPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAAS---VVA-DPFK--Y-CDVVTTTTHKS  233 (447)
Q Consensus       168 ~--~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~---~~~-~~~~--~-~Di~~~s~~K~  233 (447)
                      .  ++++++++.++||+  ..+   +++|.++|+++|+++++|++|... ...+   ..+ ..+.  + ..+++.|+||+
T Consensus       166 ~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~  244 (394)
T 2ay1_A          166 AKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGF-GDGLEEDAAGTRLIASRIPEVLIAASCSKN  244 (394)
T ss_dssp             CCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTS-SSCHHHHHHHHHHHHHHCSSEEEEEECTTT
T ss_pred             CCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCcccc-ccCcccchHHHHHHhhcCCCEEEEEeccCC
Confidence            3  25667777778775  444   568899999999999999997532 2211   000 0011  1 24778999999


Q ss_pred             cC--CCCCceEEe---ecCCcchhhHH----HHhhhccCCCCCCCCcHHHHHHHHHHHHHh-----cChhHHHHHHHHHH
Q 013217          234 LR--GPRGGMIFF---KKDPVLGVELE----SAINNAVFPGLQGGPHNHTIGGLAVCLKHA-----QSPEFKVYQNKVVS  299 (447)
Q Consensus       234 l~--Gp~gG~i~~---~~~~~~~~~~~----~~i~~~~~~~~~g~p~~~~~aal~~al~~~-----~~~~~~~~~~~~~~  299 (447)
                      ++  |.|.|++++   ++      ++.    +.+....... .++++....++...+++..     ...+.++..+++.+
T Consensus       245 ~~~~G~riG~~~~~~~~~------~~~~~l~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~  317 (394)
T 2ay1_A          245 FGIYRERTGCLLALCADA------ATRELAQGAMAFLNRQT-YSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLR  317 (394)
T ss_dssp             TTCGGGCEEEEEEECSSH------HHHHHHHHHHHHHHHTT-TSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCcCCccceEEEEeCCH------HHHHHHHHHHHHHHhhh-cCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence            74  666699987   33      332    2222111111 2233444444444455432     01235667788888


Q ss_pred             HHHHHHHHHHHCC----cEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccc
Q 013217          300 NCRALASRLVELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMT  375 (447)
Q Consensus       300 ~~~~l~~~L~~~g----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~  375 (447)
                      +++.+.+.|.+.+    +++..+ ....+.|+++     +.+.+.+.|.++||.+..             ++|++++ .+
T Consensus       318 ~~~~l~~~L~~~~~~~~~~~~~~-~~g~~~~~~~-----~~~~~~~~l~~~gi~v~~-------------~~Ris~~-~~  377 (394)
T 2ay1_A          318 LREQLAGELRDLSGSDRFGFVAE-HRGMFSRLGA-----TPEQVKRIKEEFGIYMVG-------------DSRINIA-GL  377 (394)
T ss_dssp             HHHHHHHHHHHHHTSSTTTHHHH-CCSSEEECCC-----CHHHHHHHHHHHCEECCT-------------TCEEEGG-GC
T ss_pred             HHHHHHHHHHhcCCCCCeeEEcC-CceEEEeeCC-----CHHHHHHHHHhCCEEecC-------------CCeEEee-cC
Confidence            8889999988753    665443 2244556554     346678888899999842             4799976 33


Q ss_pred             cCCCCHHHHHHHHHHHHHH
Q 013217          376 TRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       376 ~~g~~~~di~~l~~~i~~~  394 (447)
                      +    ++|++++++.|+++
T Consensus       378 ~----~~~i~~~~~~l~~~  392 (394)
T 2ay1_A          378 N----DNTIPILARAIIEV  392 (394)
T ss_dssp             C----TTTHHHHHHHHHHH
T ss_pred             C----HhhHHHHHHHHHHc
Confidence            4    89999999988764

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.85  E-value=2.5e-19  Score=176.51  Aligned_cols=315  Identities=14%  Similarity=0.119  Sum_probs=190.7

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc----
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  107 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~----  107 (447)
                      .+|.|.+++...+... ..++  ..+  ..+...++    ++++++++|.+.     .+.++||++|+..++.++.    
T Consensus        53 ~~p~v~~a~~~~~~~~-~~~~--~~~--~~~~~~~l----~~~la~~~~~~~-----v~~~~gg~ea~~~al~~~~~~~~  118 (395)
T 3nx3_A           53 NHAKFNAKIKAQVDKL-LHTS--NLY--YNENIAAA----AKNLAKASALER-----VFFTNSGTESIEGAMKTARKYAF  118 (395)
T ss_dssp             SCHHHHHHHHHHHTTC-SCCC--TTS--BCHHHHHH----HHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhc-cccc--ccc--CCHHHHHH----HHHHHHhcCCCe-----EEEeCCHHHHHHHHHHHHHHHhh
Confidence            3799999998877542 2222  111  22333344    367888888432     2445777899999888764    


Q ss_pred             ---CCCCEEEEecCCCCcccCCCcccccccc---ccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCC-C
Q 013217          108 ---KPHDRIMGLDLPHGGHLSHGFMTPKRRV---SGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-Y  180 (447)
Q Consensus       108 ---~pgd~Vl~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~-~  180 (447)
                         .++|+|++.++.|.+.............   .+......+..++      ..|+++|++++++ ++++|++.+++ +
T Consensus       119 ~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~l~~-~~~~v~~~~~~~~  191 (395)
T 3nx3_A          119 NKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAK------YNDISSVEKLVNE-KTCAIILESVQGE  191 (395)
T ss_dssp             HTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEEC------TTCHHHHHTTCCT-TEEEEEEESEECT
T ss_pred             ccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeC------CCCHHHHHHhccC-CeEEEEEeCccCC
Confidence               4689999999887654210000000000   0000000111211      1389999999875 78888887543 3


Q ss_pred             CC-CCC----hHHHHHHHHHhCCEEEEehhhhcccccccc-CC-CCCC-cccEEEeCCCcccC-CCCCceEEeecCCcch
Q 013217          181 PR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASV-VA-DPFK-YCDVVTTTTHKSLR-GPRGGMIFFKKDPVLG  251 (447)
Q Consensus       181 ~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~-~~~~-~~Di~~~s~~K~l~-Gp~gG~i~~~~~~~~~  251 (447)
                      ++ ..+    +++|.++|++||+++|+|++|. |+...+. .. ...+ ..|++++|  |+++ |++.|++++++     
T Consensus       192 ~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~-~~g~~g~~~~~~~~~~~~d~~t~s--K~~~~G~~~G~~~~~~-----  263 (395)
T 3nx3_A          192 GGINPANKDFYKALRKLCDEKDILLIADEIQC-GMGRSGKFFAYEHAQILPDIMTSA--KALGCGLSVGAFVINQ-----  263 (395)
T ss_dssp             TSCEECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEEC--GGGTTTSCCEEEEECH-----
T ss_pred             CCcccCCHHHHHHHHHHHHHcCCEEEEEeccc-CCCcCCcchhHHhcCCCCCEEEec--ccccCCCceEEEEEch-----
Confidence            34 334    8999999999999999999974 3322221 00 0011 25777654  9874 56679999988     


Q ss_pred             hhH-HHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH----CC-cEeeeCCCCCeeE
Q 013217          252 VEL-ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----LG-YKLVSGGSDNHLV  325 (447)
Q Consensus       252 ~~~-~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g-~~~~~~~~~~~~~  325 (447)
                       ++ .+.+......+.+ +.+....++..++++.+..+   ++.+++.++.+++++.|.+    .+ +....+  ...++
T Consensus       264 -~~~~~~~~~~~~~~~~-~~~~~~~~aa~aal~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~g~~~  336 (395)
T 3nx3_A          264 -KVASNSLEAGDHGSTY-GGNPLVCAGVNAVFEIFKEE---KILENVNKLTPYLEQSLDELINEFDFCKKRKG--LGFMQ  336 (395)
T ss_dssp             -HHHHHHSCTTCCSSCB-SCCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE--ETTEE
T ss_pred             -hhhhhhcCCcccCCCC-CCCHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe--EEEEE
Confidence             66 7776554322222 33445555555567655322   3355566666666666654    22 222221  23455


Q ss_pred             EecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          326 LVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       326 ~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      ++++... .+..++.+.|.++||.++..         ..+.+|++++..++    ++|++++++.|+++++
T Consensus       337 ~~~~~~~-~~~~~~~~~l~~~Gi~v~~~---------~~~~iRi~~~~~~t----~e~i~~~l~~l~~~l~  393 (395)
T 3nx3_A          337 GLSLDKS-VKVAKVIQKCQENALLLISC---------GENDLRFLPPLILQ----KEHIDEMSEKLRKALK  393 (395)
T ss_dssp             EEEECTT-SCHHHHHHHHHHTTEECEEE---------TTTEEEECCCTTCC----HHHHHHHHHHHHHHHH
T ss_pred             EEEeCCc-chHHHHHHHHHHCCCEEecC---------CCCEEEEECCCCCC----HHHHHHHHHHHHHHHH
Confidence            6666432 35678888898999998642         14589999887777    9999999999998875

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.85  E-value=6.4e-20  Score=182.33  Aligned_cols=327  Identities=15%  Similarity=0.081  Sum_probs=194.3

Q ss_pred             eeEecCC--CCC----CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC-CCccceeeecCCc
Q 013217           23 LELIASE--NFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSG   95 (447)
Q Consensus        23 i~l~~~~--n~~----~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~-~~~~~~~v~~~sG   95 (447)
                      |++..+.  +++    +|.|.+++...+... .. +...+| . .+...++    ++++++++|.+ ++++   +..++|
T Consensus        45 lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~-~~-~~~~~~-~-~~~~~~l----~~~la~~~~~~~~~~v---~~~~gg  113 (419)
T 2eo5_A           45 LDFTSGIGVNNLGWPSHPEVIKIGIEQMQKL-AH-AAANDF-Y-NIPQLEL----AKKLVTYSPGNFQKKV---FFSNSG  113 (419)
T ss_dssp             EESSGGGGTTTTCBSCCHHHHHHHHHHHTTS-CC-CSCSCS-C-CHHHHHH----HHHHHHHSSCSSCEEE---EEESSH
T ss_pred             EEccCChhhhccCCCCCHHHHHHHHHHHhhC-cc-cccccc-C-CHHHHHH----HHHHHHhCCCCcCCEE---EEeCch
Confidence            4554554  333    799999998877542 11 111111 1 1222233    35788899987 5432   223556


Q ss_pred             HHHHHHHHHHhcC-CCCEEEEecCCCCcccCCCcc------ccccccccccceeEEEecccCCCCCC-------------
Q 013217           96 SPANFEVYTAILK-PHDRIMGLDLPHGGHLSHGFM------TPKRRVSGTSIYFESMPYRLDESTGL-------------  155 (447)
Q Consensus        96 s~a~~~~~~al~~-pgd~Vl~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~~~~~~~~~~~~-------------  155 (447)
                      ++|+..++.++.. +||+|++.+|.+.+.......      ..+.........+..++  ++ +.+.             
T Consensus       114 ~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~~~~~g~~~~~~~~~  190 (419)
T 2eo5_A          114 TEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVP--YP-NPYRNPWHINGYENPSE  190 (419)
T ss_dssp             HHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEEC--CC-CSSSCTTCCCTTTCHHH
T ss_pred             HHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEEC--CC-ccccccccccccccchh
Confidence            6999998887643 499999999887543210000      00000000011223333  32 2221             


Q ss_pred             ---CCHHHHH-HHhhh----hCCcEEEEcCCCCC-C-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-CCC-
Q 013217          156 ---VDYDMLE-KTAIL----FRPKLIIAGASAYP-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-ADP-  219 (447)
Q Consensus       156 ---id~~~l~-~~~~~----~~~klii~~~~~~~-~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~~~-  219 (447)
                         +|+++|+ +++++    .++++|++++.+++ + ..+    +++|.++|++||+++|+|++|. |+...+.. ... 
T Consensus       191 ~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~-~~g~~g~~~~~~~  269 (419)
T 2eo5_A          191 LVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQM-GLGRTGKLFAIEN  269 (419)
T ss_dssp             HHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGG
T ss_pred             hHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCccCcchhhHHh
Confidence               4789999 88874    35678887755444 4 455    8999999999999999999985 33222211 001 


Q ss_pred             CC-cccEEEeCCCcccCC--CCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHH
Q 013217          220 FK-YCDVVTTTTHKSLRG--PRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK  296 (447)
Q Consensus       220 ~~-~~Di~~~s~~K~l~G--p~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~  296 (447)
                      .. ..|+++  ++|++++  .|.|++++++      ++. .+ .....+. .+.+...+++..++++...     +..++
T Consensus       270 ~~~~~d~~t--~sK~~~~G~~riG~~~~~~------~~~-~~-~~~~~~t-~~~n~~~~~aa~aal~~~~-----~~~~~  333 (419)
T 2eo5_A          270 FNTVPDVIT--LAKALGGGIMPIGATIFRK------DLD-FK-PGMHSNT-FGGNALACAIGSKVIDIVK-----DLLPH  333 (419)
T ss_dssp             GTCCCSEEE--ECGGGGTTTSCCEEEEEEG------GGC-CC-------C-CCCCHHHHHHHHHHHHHHH-----HHHHH
T ss_pred             cCCCCCEEE--ecccccCCccceEEEEEch------Hhh-cC-CcccCCC-CCCCHHHHHHHHHHHHHHH-----HHHHH
Confidence            11 357764  5599864  5669999987      444 44 2111111 2335555666666776532     25778


Q ss_pred             HHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCcccc
Q 013217          297 VVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTT  376 (447)
Q Consensus       297 ~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~  376 (447)
                      +.+++++|.+.|.+. +..+.+  ...++++++.+...... +.+.|.++||.++..    .     .+.+|++++..++
T Consensus       334 ~~~~~~~l~~~L~~~-~~~~~~--~g~~~~i~~~~~~~~~~-~~~~l~~~Gv~v~~~----~-----~~~lRis~~~~~t  400 (419)
T 2eo5_A          334 VNEIGKIFAEELQGL-ADDVRG--IGLAWGLEYNEKKVRDR-IIGESFKRGLLLLPA----G-----RSAIRVIPPLVIS  400 (419)
T ss_dssp             HHHHHHHHHHHHTTS-SSEEEE--ETTEEEEECSCHHHHHH-HHHHHHHTTEECEEE----T-----TTEEEECCCTTCC
T ss_pred             HHHHHHHHHHHHHHh-hhheEe--eeEEEEEEEecCccHHH-HHHHHHHCCCEEecC----C-----CCEEEEECCCCCC
Confidence            888899999999775 322222  23455677642111234 777777899998642    1     3589998887777


Q ss_pred             CCCCHHHHHHHHHHHHHHHHH
Q 013217          377 RGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       377 ~g~~~~di~~l~~~i~~~l~~  397 (447)
                          ++|++++++.|++++..
T Consensus       401 ----~e~i~~~l~~l~~~l~~  417 (419)
T 2eo5_A          401 ----EEEAKQGLDILKKVIKV  417 (419)
T ss_dssp             ----HHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHh
Confidence                99999999999988753

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.85  E-value=1.6e-19  Score=181.02  Aligned_cols=321  Identities=16%  Similarity=0.066  Sum_probs=197.1

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcc-cCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcC--
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRY-YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--  108 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~-~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~--  108 (447)
                      .+|.|.+++...+.+. .  +  .++ .+..+...++    +++++++++.+.+.   .+.+++|++|+.+++.++..  
T Consensus        67 ~~~~v~~a~~~~~~~~-~--~--~~~~~~~~~~~~~l----~~~la~~~~~~~~~---v~~~~ggsea~~~al~~~~~~~  134 (449)
T 3a8u_X           67 TRKEIQEAVAKQLSTL-D--Y--SPGFQYGHPLSFQL----AEKITDLTPGNLNH---VFFTDSGSECALTAVKMVRAYW  134 (449)
T ss_dssp             SCHHHHHHHHHHTTTC-S--C--CCSSSCCCHHHHHH----HHHHHTTSSTTEEE---EEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhC-C--C--ccccccCCHHHHHH----HHHHHHhCCCCCCE---EEEcCcHHHHHHHHHHHHHHHH
Confidence            3799999998877542 1  1  111 1112222333    46788888766542   23346677999999887753  


Q ss_pred             ------CCCEEEEecCCCCcccCCCcccccccccccc------------ceeEEEecccCCC-C-CCCC--------HHH
Q 013217          109 ------PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS------------IYFESMPYRLDES-T-GLVD--------YDM  160 (447)
Q Consensus       109 ------pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~-~-~~id--------~~~  160 (447)
                            +||+|++.++.|.+....       .+...|            ..+..++++.... . ..+|        +++
T Consensus       135 ~~~g~~~~~~vi~~~~~yhg~~~~-------~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~  207 (449)
T 3a8u_X          135 RLKGQATKTKMIGRARGYHGVNIA-------GTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADE  207 (449)
T ss_dssp             HHTTCTTCCEEEEETTCCCCSSHH-------HHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCcCCCChh-------hhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHH
Confidence                  789999998887654210       011111            1123344322100 0 1246        999


Q ss_pred             HHHHhhh---hCCcEEEEcCCCC-CC-CCC----hHHHHHHHHHhCCEEEEehhhh-ccccccccCC-CCCC-cccEEEe
Q 013217          161 LEKTAIL---FRPKLIIAGASAY-PR-DFD----YPRMRQIADAVGALLMMDMAHI-SGLVAASVVA-DPFK-YCDVVTT  228 (447)
Q Consensus       161 l~~~~~~---~~~klii~~~~~~-~~-~~~----~~~i~~ia~~~g~~livD~a~~-~g~~~~~~~~-~~~~-~~Di~~~  228 (447)
                      |++++++   .++++|++++.++ ++ ..+    +++|.++|++||+++|+|++|. .|.... ... ..+. ..|++  
T Consensus       208 le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~-~~~~~~~~~~~di~--  284 (449)
T 3a8u_X          208 LLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGS-MFGADSFGVTPDLM--  284 (449)
T ss_dssp             HHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSHHHHHTCCCSEE--
T ss_pred             HHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCc-chhhhhcCCCCCEE--
Confidence            9999874   2567887775433 34 577    9999999999999999999984 332211 000 0001 25777  


Q ss_pred             CCCcccCC--CCCceEEeecCCcchhhHHHHhhhcc--------CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHH
Q 013217          229 TTHKSLRG--PRGGMIFFKKDPVLGVELESAINNAV--------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVV  298 (447)
Q Consensus       229 s~~K~l~G--p~gG~i~~~~~~~~~~~~~~~i~~~~--------~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~  298 (447)
                      |++|+|+|  .|.|++++++      ++.+.+....        ..+...+.+...+++..++++.+...   ++.+++.
T Consensus       285 s~sK~l~~G~~~~G~~~~~~------~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~---~~~~~~~  355 (449)
T 3a8u_X          285 CIAKQVTNGAIPMGAVIAST------EIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKE---NLVQSVA  355 (449)
T ss_dssp             EECGGGGTTSSCCEEEEEEH------HHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHT---THHHHHH
T ss_pred             EEcccccCCCCceEEEEECH------HHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHhc---CHHHHHH
Confidence            45599965  5788888887      6777765431        11112233555566666677765432   3567788


Q ss_pred             HHHHHHHHHHHHCC-cEeeeC-CCCCeeEEecCCCCCC----CHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecC
Q 013217          299 SNCRALASRLVELG-YKLVSG-GSDNHLVLVDLRPMGI----DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSP  372 (447)
Q Consensus       299 ~~~~~l~~~L~~~g-~~~~~~-~~~~~~~~v~~~~~~~----~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~  372 (447)
                      ++.+.+.+.|.+.+ +..+.. .....++++++.....    +..++.+.|.++||.++..          .+.+|++++
T Consensus       356 ~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----------g~~iRis~~  425 (449)
T 3a8u_X          356 EVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRFG----------GDTLQFGPT  425 (449)
T ss_dssp             HHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBSSHHHHHHHHHHHHHTEECEEE----------TTEEEECCC
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCcccccccHHHHHHHHHHCCcEEecC----------CCEEEEECC
Confidence            88889999887732 322210 0123456777653211    1236788888889998642          158999988


Q ss_pred             ccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          373 AMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       373 ~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      ..++    ++|++++++.|+++++.
T Consensus       426 ~~~t----~~~i~~~l~~l~~~l~~  446 (449)
T 3a8u_X          426 FNSK----PQDLDRLFDAVGEVLNK  446 (449)
T ss_dssp             TTCC----HHHHHHHHHHHHHHHHH
T ss_pred             CcCC----HHHHHHHHHHHHHHHHH
Confidence            7777    99999999999988763

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.85  E-value=3.3e-20  Score=186.18  Aligned_cols=281  Identities=17%  Similarity=0.133  Sum_probs=177.2

Q ss_pred             HHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC
Q 013217           71 CQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD  150 (447)
Q Consensus        71 ~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  150 (447)
                      +++++++++|.+.     .+.+++|++|+.+++. +++|||+|++.++.|+++.....    ..+...|.  +++.++. 
T Consensus       138 l~~~la~~~g~~~-----~i~~~sGt~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~~----~~~~~~G~--~v~~v~~-  204 (464)
T 1ibj_A          138 LESLLAKLDKADR-----AFCFTSGMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLLS----QVVPRSGV--VVKRVNT-  204 (464)
T ss_dssp             HHHHHHHHHTCSE-----EEEESSHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHH----HTSGGGTC--EEEEECT-
T ss_pred             HHHHHHHHhCCCe-----EEEECCHHHHHHHHHH-HhCCCCEEEEECCCchhHHHHHH----HHHHHcCC--EEEEeCC-
Confidence            3478899999762     3445888888887764 78999999999998876531100    01223444  4445433 


Q ss_pred             CCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-cccEEE
Q 013217          151 ESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVT  227 (447)
Q Consensus       151 ~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-~~Di~~  227 (447)
                           .|++++++++++ +|++|++++++||+  ..|+++|.++|+++|+++++|++|+.|...     .++. ++|+++
T Consensus       205 -----~d~~~l~~~i~~-~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~~-----~~~~~~~div~  273 (464)
T 1ibj_A          205 -----TKLDEVAAAIGP-QTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLS-----RPLELGADIVM  273 (464)
T ss_dssp             -----TSHHHHHHHCCS-SEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTC-----CGGGTTCSEEE
T ss_pred             -----CCHHHHHHHhcc-CceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCcccccC-----ChhhcCCEEEE
Confidence                 289999999986 89999999888775  779999999999999999999999766432     1222 489999


Q ss_pred             eCCCcccCCC---CCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHH
Q 013217          228 TTTHKSLRGP---RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL  304 (447)
Q Consensus       228 ~s~~K~l~Gp---~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l  304 (447)
                      +|+||+++||   ++|+++++++     ++.+.+....... .++.+.....+...+++     ....+.++..+++..+
T Consensus       274 ~S~sK~~~g~~Gl~~G~l~~~~~-----~l~~~l~~~~~~~-g~~~~~~~~~a~~~al~-----~~~~r~~~~~~~~~~l  342 (464)
T 1ibj_A          274 HSATKFIAGHSDVMAGVLAVKGE-----KLAKEVYFLQNSE-GSGLAPFDCWLCLRGIK-----TMALRIEKQQENARKI  342 (464)
T ss_dssp             EETTTTTTCSSCCCCEEEEECSH-----HHHHHHHHHHHHT-TCBCCHHHHHHHHHHHT-----THHHHHHHHHHHHHHH
T ss_pred             ECCcccccCCCCCcEEEEEEChH-----HHHHHHHHHHHhc-CCCCCHHHHHHHHhchh-----hHHHHHHHHHHHHHHH
Confidence            9999999765   5599999863     5666655432111 12223322222222332     2333455556666667


Q ss_pred             HHHHHHCC---------------cEeeeCCC--CCeeEEecCCCCCCC-HHHHHHHHhhcCeEEccCC------CCCCC-
Q 013217          305 ASRLVELG---------------YKLVSGGS--DNHLVLVDLRPMGID-GARVEKILDMASITLNKNS------VPGDK-  359 (447)
Q Consensus       305 ~~~L~~~g---------------~~~~~~~~--~~~~~~v~~~~~~~~-~~~~~~~L~~~gI~v~~~~------~p~~~-  359 (447)
                      .+.|++.+               +++..+..  ...++++++.  +.. ...+.+.|...||.++.+.      .|... 
T Consensus       343 ~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~--~~~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~  420 (464)
T 1ibj_A          343 AMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITG--SVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMS  420 (464)
T ss_dssp             HHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECS--CHHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTT
T ss_pred             HHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEEC--CHHHHHHHHHhcCcceEeecCCCCceeeecccccc
Confidence            77776532               22221110  1235666663  221 2346666766788877542      12100 


Q ss_pred             -----------CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          360 -----------SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       360 -----------~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                                 ....++.+|++++.        +|++++++.|++++.
T Consensus       421 ~~~~~~~~~~~~g~~~~~iRlsvg~--------edi~~li~~L~~al~  460 (464)
T 1ibj_A          421 HASIPAEVREARGLTEDLVRISAGI--------EDVDDLISDLDIAFK  460 (464)
T ss_dssp             TCSCCSSSSSSSSCCTTCEEEECCS--------SCHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHhcCCCcCeEEEEeCC--------CCHHHHHHHHHHHHh
Confidence                       01124579998763        688889998888775

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.85  E-value=1.6e-18  Score=172.80  Aligned_cols=327  Identities=13%  Similarity=0.083  Sum_probs=185.0

Q ss_pred             CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc-----
Q 013217           33 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL-----  107 (447)
Q Consensus        33 ~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~-----  107 (447)
                      +|.|.+++.+.+.+. ..+++ .++  ..+...++    ++++++.++.+.+.+   +..++|++|+..++.+++     
T Consensus        47 ~p~v~~a~~~~~~~~-~~~~~-~~~--~~~~~~~l----~~~la~~~~~~~~~v---~~~~gg~ea~~~al~~~~~~~~~  115 (430)
T 3i4j_A           47 RAEVGERMAAQAARL-PFVHG-SQF--SSDVLEEY----AGRLARFVGLPTFRF---WAVSGGSEATESAVKLARQYHVE  115 (430)
T ss_dssp             CHHHHHHHHHHHHHC-CCCCT-TTC--EEHHHHHH----HHHHHHHTTCTTCEE---EEESSHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhc-ccccc-ccc--CCHHHHHH----HHHHHHhCCCCCCEE---EEeCcHHHHHHHHHHHHHHHHHh
Confidence            899999998877542 11111 111  12223333    467888998776532   334567799999988876     


Q ss_pred             ---CCCCEEEEecCCCCcccCCCccccccccccccc--------------eeEEEecccCCCCCCCCHHHHHHHhhh---
Q 013217          108 ---KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI--------------YFESMPYRLDESTGLVDYDMLEKTAIL---  167 (447)
Q Consensus       108 ---~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~--------------~~~~~~~~~~~~~~~id~~~l~~~~~~---  167 (447)
                         .++|+|++.++.|.+.....       ....+.              .+..++++-....+..|+++|++++++   
T Consensus       116 ~g~~~~~~vi~~~~~yhg~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~  188 (430)
T 3i4j_A          116 RGEPGRFKVITRVPSYHGASLGS-------LAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGP  188 (430)
T ss_dssp             TTCTTCCEEEEETTC--------------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCG
T ss_pred             cCCCCCcEEEEEeCCcCCCCccc-------ccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCC
Confidence               45789999998876543111       011111              111111110000023477899998874   


Q ss_pred             hCCcEEEEcCCCC-C-C-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccCC--CCC-C-cccEEEeCCCcccC-
Q 013217          168 FRPKLIIAGASAY-P-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPF-K-YCDVVTTTTHKSLR-  235 (447)
Q Consensus       168 ~~~klii~~~~~~-~-~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~--~~~-~-~~Di~~~s~~K~l~-  235 (447)
                      .++++|+++++++ + + ..+    +++|.++|++||+++|+|++|. |+...+...  ... + ..|++++  +|+++ 
T Consensus       189 ~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-~~~~~g~~~~~~~~~~~~~di~t~--sK~l~~  265 (430)
T 3i4j_A          189 ETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMS-GMGRCGSPLALSRWSGVTPDIAVL--GKGLAA  265 (430)
T ss_dssp             GGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTTCCCSEEEE--CGGGTT
T ss_pred             CCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCcccchhhhhhhcCCCCcEEEE--cccccC
Confidence            3567777765443 2 2 344    8999999999999999999974 443222110  001 1 2467765  49985 


Q ss_pred             C-CCCceEEeecCCcchhhHHHHhhhc---cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-
Q 013217          236 G-PRGGMIFFKKDPVLGVELESAINNA---VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-  310 (447)
Q Consensus       236 G-p~gG~i~~~~~~~~~~~~~~~i~~~---~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-  310 (447)
                      | .|.|++++++      ++.+.+...   ...+...+.+....++..++++.+..+   ++.+++.++.+++++.|.+ 
T Consensus       266 G~~r~G~~~~~~------~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~~~~~l~~~  336 (430)
T 3i4j_A          266 GYAPLAGLLAAP------QVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVERE---DLTGAAKERGAQLLAGLQAL  336 (430)
T ss_dssp             TSSCCEEEEECH------HHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHH
T ss_pred             CccccEEEEECH------HHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHHHH
Confidence            4 6679999987      787777653   111122233455555555577755432   3455666666666666654 


Q ss_pred             ----CCcEeeeCCCCCeeEEecCCCC--------CCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCC
Q 013217          311 ----LGYKLVSGGSDNHLVLVDLRPM--------GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRG  378 (447)
Q Consensus       311 ----~g~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g  378 (447)
                          .++..+.+ . ..++++++...        .....++.+.|.++||.+.....+.  .+..++.+|++++...+  
T Consensus       337 ~~~~~~~~~~~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~--~~~~~~~iRi~~~~~~t--  410 (430)
T 3i4j_A          337 QARFPQMMQVRG-T-GLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAE--PNGRGDHLLLGPPLSIT--  410 (430)
T ss_dssp             HHHCTTEEEEEE-E-TTEEEEEEC------------CHHHHHHHHHHTTEECC-------------CEEEECCCTTCC--
T ss_pred             HHhCCCeEEEEE-E-EEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEeccccc--CCCCCCEEEEECCCCCC--
Confidence                23433332 1 23445554321        1113567888889999986431111  11224579999887777  


Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q 013217          379 FSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       379 ~~~~di~~l~~~i~~~l~~  397 (447)
                        +++++++++.|+++++.
T Consensus       411 --~e~i~~~l~~l~~~l~~  427 (430)
T 3i4j_A          411 --AAEVDGLLALLAGALED  427 (430)
T ss_dssp             --HHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHH
Confidence              99999999999998864

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.84  E-value=9.6e-20  Score=186.47  Aligned_cols=340  Identities=14%  Similarity=0.101  Sum_probs=200.1

Q ss_pred             CeeEecCCCC-CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CC-CccceeeecCCcH-
Q 013217           22 SLELIASENF-TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DE-NKWGVNVQPLSGS-   96 (447)
Q Consensus        22 ~i~l~~~~n~-~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~-~~~~~~v~~~sGs-   96 (447)
                      .++|..+++. .++.+.+++...+..   .+||...  +..   ...+..++.++.+.++.  +. +.  .+|.+++|+ 
T Consensus       106 ~i~l~~g~~~~~~~~~~~al~~~~~~---~~Y~~~~--g~~---~lr~~ia~~~~~~~~~~~~~~~~~--~~I~~t~G~~  175 (546)
T 2zy4_A          106 SLSYVRDQLGLDPAAFLHEMVDGILG---CNYPVPP--RML---NISEKIVRQYIIREMGADAIPSES--VNLFAVEGGT  175 (546)
T ss_dssp             HHHHHHHTSCCCHHHHHHHHHHHHHT---CSCCSSS--SCC---HHHHHHHHHHHHHHTTCTTSCGGG--EEEEEEEHHH
T ss_pred             hhecccCCCCCCChHHHHHHHHhhhc---CCCCCCc--CCH---HHHHHHHHHHHHHhccCCCCCCCc--ceEEEECCHH
Confidence            3455445553 356666666655432   2444431  111   23444455555665543  11 00  245567887 


Q ss_pred             HHHHHHHHH-----hcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-CCCCCHHHHHHHhhhhCC
Q 013217           97 PANFEVYTA-----ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRP  170 (447)
Q Consensus        97 ~a~~~~~~a-----l~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~~~~~~~  170 (447)
                      +++..++.+     +++|||+|++.+|.|.++..        .+.+.+.+.++++++++++ ++.+|+++|++++.. ++
T Consensus       176 eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~--------~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~-~~  246 (546)
T 2zy4_A          176 AAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIE--------IPELAQYALEEVAINADPSLNWQYPDSELDKLKDP-AI  246 (546)
T ss_dssp             HHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHH--------HHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGST-TE
T ss_pred             HHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHH--------HHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCC-CC
Confidence            888888877     57999999999998876532        1112333346666666543 467999999987755 88


Q ss_pred             cEEEEcCCCCCC--CCC---hHHHHHHH--HHhCCEEEEehhhhccccccccCCCCC---CcccEEEeCCCccc--CCCC
Q 013217          171 KLIIAGASAYPR--DFD---YPRMRQIA--DAVGALLMMDMAHISGLVAASVVADPF---KYCDVVTTTTHKSL--RGPR  238 (447)
Q Consensus       171 klii~~~~~~~~--~~~---~~~i~~ia--~~~g~~livD~a~~~g~~~~~~~~~~~---~~~Di~~~s~~K~l--~Gp~  238 (447)
                      ++|+++.++||+  ..+   +++|.++|  +++|+++|+|+++. ++...  ..+..   +..++++.|++|++  +|.|
T Consensus       247 k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~-~~~~~--~~s~~~~~~~~~i~~~S~SK~~g~~GlR  323 (546)
T 2zy4_A          247 KIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYG-TFADD--FQSLFAICPENTLLVYSFSKYFGATGWR  323 (546)
T ss_dssp             EEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTG-GGSTT--CCCHHHHCGGGEEEEEESTTTTTCGGGC
T ss_pred             eEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcch-hhccc--CcCHHHhCCCCEEEEEeCccccCCCCcc
Confidence            999988888886  555   56778888  77899999999975 33321  11111   13568899999987  4778


Q ss_pred             CceEEeecCCcchhhHHHHhhhcc-----------------------------------CCCCCCCCcHHHHHHHHH-HH
Q 013217          239 GGMIFFKKDPVLGVELESAINNAV-----------------------------------FPGLQGGPHNHTIGGLAV-CL  282 (447)
Q Consensus       239 gG~i~~~~~~~~~~~~~~~i~~~~-----------------------------------~~~~~g~p~~~~~aal~~-al  282 (447)
                      .|+++++++     ++.+.+....                                   ......+.+.....+++. ++
T Consensus       324 iG~~~~~~~-----~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~  398 (546)
T 2zy4_A          324 LGVVAAHQQ-----NVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSL  398 (546)
T ss_dssp             EEEEEEESS-----CHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHH
T ss_pred             eEEEEECCH-----HHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHH
Confidence            899999873     2544442100                                   001111222222222210 11


Q ss_pred             -HHhcC-hhH-HHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCC---------------CC-CHHHHHHHH
Q 013217          283 -KHAQS-PEF-KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPM---------------GI-DGARVEKIL  343 (447)
Q Consensus       283 -~~~~~-~~~-~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~---------------~~-~~~~~~~~L  343 (447)
                       ..+.. ..+ ++..+.+.++.+.+.+.|. .++.+. ++..++++|+++...               +. +...+.+.|
T Consensus       399 ~all~~~~~~~~~~r~~~~~r~~~l~~~L~-~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll  476 (546)
T 2zy4_A          399 FALMDEADEYKHTLKQLIRRRETTLYRELG-MPPLRD-ENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIA  476 (546)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHHHHGGGT-SSCCCC-TTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHhcC-CCcccC-CCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHH
Confidence             11111 223 4555666667777777764 344322 223456667776310               01 234567788


Q ss_pred             hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHHH
Q 013217          344 DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITL  399 (447)
Q Consensus       344 ~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~  399 (447)
                      .++||.+..+...+.    ..+++|+++.. .+    +++++++++.|++++....
T Consensus       477 ~~~gV~v~pG~~F~~----~~~~iRis~~~-~~----~e~i~~~~~~l~~~l~~~~  523 (546)
T 2zy4_A          477 DETGIVLLPGRGFGS----NRPSGRASLAN-LN----EYEYAAIGRALRKMADELY  523 (546)
T ss_dssp             HHHSCCCEESSCTTC----SSCEEEEESSS-SC----HHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCEEEeCccccCC----CCCeEEEEecc-CC----HHHHHHHHHHHHHHHHHHH
Confidence            899999965432221    24679999853 23    8999999999999887653

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.84  E-value=2.4e-19  Score=178.21  Aligned_cols=191  Identities=19%  Similarity=0.153  Sum_probs=130.8

Q ss_pred             eEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHH
Q 013217           24 ELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY  103 (447)
Q Consensus        24 ~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~  103 (447)
                      .+..+.++..+.+.++...+ .+. ..|+...|+  +++...+++    +++++++|.+.     .+.++||++|+..++
T Consensus        24 pi~~~~~~~~~~~~~~~~~~-~~~-~~~~~y~~~--~~~~~~~l~----~~la~~~g~~~-----~v~~~sGt~A~~~~l   90 (421)
T 2ctz_A           24 PIYPTTSYVFKSPEHAANLF-ALK-EFGNIYSRI--MNPTVDVLE----KRLAALEGGKA-----ALATASGHAAQFLAL   90 (421)
T ss_dssp             CBCCCSCBCCSCHHHHHHHH-TTT-TGGGSCBTT--BCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHH
T ss_pred             CeeccceeeeCCHHHHHHhh-ccc-cCCCcccCC--CChHHHHHH----HHHHHHhCCCc-----eEEecCHHHHHHHHH
Confidence            44556666655555543322 111 123433333  234445555    67889999873     245689999999999


Q ss_pred             HHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEec-ccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC
Q 013217          104 TAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY-RLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR  182 (447)
Q Consensus       104 ~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~  182 (447)
                      .+++++||+|++..+.|++......    ......|.  +++.+ +.+      |++++++++++ +|++|++.+++|++
T Consensus        91 ~~~~~~gd~vi~~~~~~~~~~~~~~----~~~~~~g~--~~~~~~~~~------d~~~l~~~i~~-~~~~v~~~~~~n~~  157 (421)
T 2ctz_A           91 TTLAQAGDNIVSTPNLYGGTFNQFK----VTLKRLGI--EVRFTSREE------RPEEFLALTDE-KTRAWWVESIGNPA  157 (421)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHH----THHHHTTC--EEEECCTTC------CHHHHHHHCCT-TEEEEEEESSCTTT
T ss_pred             HHHhCCCCEEEEeCCCchHHHHHHH----HHHHHcCC--EEEEECCCC------CHHHHHHhhcc-CCeEEEEECCCCCC
Confidence            9999999999999998877643210    00123343  55554 332      89999999987 89999998777764


Q ss_pred             --CCChHHHHHHHHHhCCEEEEehhh-hccccccccCCCCCC-cccEEEeCCCcccCCCCC--ceEEee
Q 013217          183 --DFDYPRMRQIADAVGALLMMDMAH-ISGLVAASVVADPFK-YCDVVTTTTHKSLRGPRG--GMIFFK  245 (447)
Q Consensus       183 --~~~~~~i~~ia~~~g~~livD~a~-~~g~~~~~~~~~~~~-~~Di~~~s~~K~l~Gp~g--G~i~~~  245 (447)
                        ..|+++|.++|+++|+++++|++| +.|...     .++. ++|++++|+||+++||.+  |++++.
T Consensus       158 G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~~-----~~~~~~~Di~~~s~~K~l~~~g~~~G~~~~~  221 (421)
T 2ctz_A          158 LNIPDLEALAQAAREKGVALIVDNTFGMGGYLL-----RPLAWGAALVTHSLTKWVGGHGAVIAGAIVD  221 (421)
T ss_dssp             CCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSC-----CGGGGTCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred             CcccCHHHHHHHHHHcCCEEEEECCcccccccC-----CccccCCeEEEECCcccccCCCCcEEEEEEe
Confidence              789999999999999999999999 776421     1222 489999999999987553  544443

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.83  E-value=3.4e-21  Score=189.21  Aligned_cols=310  Identities=8%  Similarity=0.028  Sum_probs=182.7

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-HHHHHHHHHh---cCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217           64 IDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAI---LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  139 (447)
Q Consensus        64 ~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a~~~~~~al---~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g  139 (447)
                      ...+|+....++.+++|++...-+  +.++.+| .++.+++.+.   ..+++.|+++.-.|.+.+        +.+.+.|
T Consensus        96 ~~~~e~~~~~~~~~~lGlp~~~~~--~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~--------kAl~l~G  165 (450)
T 3bc8_A           96 LNKITNSLVLNVIKLAGVHSVASC--FVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCF--------KSMVTAG  165 (450)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTCCEE--EEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHH--------HHHHHTT
T ss_pred             HHHHHHHHHHHHHHhCCCCCCceE--EEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHH--------HHHHHcC
Confidence            446777777889999999854321  2234444 3444333333   224899998876665543        3556777


Q ss_pred             ceeEEEecccCCCCCCCCHHHHHHHhhhhC---CcEEEEcCCCCC--CCCChHHHHHHHHHhCCEEEEehhhhccccccc
Q 013217          140 IYFESMPYRLDESTGLVDYDMLEKTAILFR---PKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAAS  214 (447)
Q Consensus       140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~~---~klii~~~~~~~--~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~  214 (447)
                      .....++...+.+.+.+|+++|+++++++.   +-+|+.+.+.|+  ...|+++|+++|++||+|++||+||...+....
T Consensus       166 l~p~~v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~  245 (450)
T 3bc8_A          166 FEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCM  245 (450)
T ss_dssp             CEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHH
T ss_pred             CeeEEEEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhH
Confidence            655544433333567899999999998743   233444455554  378999999999999999999999875433221


Q ss_pred             cCC-CCC--CcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhccCCCCC-CCCcHHHHHHHHHHHHHhcChh
Q 013217          215 VVA-DPF--KYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGLQ-GGPHNHTIGGLAVCLKHAQSPE  289 (447)
Q Consensus       215 ~~~-~~~--~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~~~~~~~-g~p~~~~~aal~~al~~~~~~~  289 (447)
                      ..+ ..+  .++|+++.|+|||+..|-+ ++++++++     +..+.+... +++.+ ++|.    ..++.++......+
T Consensus       246 ~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~-----~~~~~~~~~-~~g~~s~Sps----L~l~~~l~~~G~~g  315 (450)
T 3bc8_A          246 HLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNE-----PFIQDISKM-YPGRASASPS----LDVLITLLSLGCSG  315 (450)
T ss_dssp             HHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCH-----HHHHHHHHH-SCSCBCSHHH----HHHHHHHHHHHHHH
T ss_pred             hHHHHHhcccCCCEEEECCccCCCchhccEEEEecCH-----HHHHHHHHH-hhcCCcccHH----HHHHHHHHHHHHHH
Confidence            111 112  3699999999999999977 66666653     555555443 33332 2232    23344444444456


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-C---CcEeeeCCCCCe-eEEecCCCC----CCCHHHHHHHHhhcC---eEEccC----
Q 013217          290 FKVYQNKVVSNCRALASRLVE-L---GYKLVSGGSDNH-LVLVDLRPM----GIDGARVEKILDMAS---ITLNKN----  353 (447)
Q Consensus       290 ~~~~~~~~~~~~~~l~~~L~~-~---g~~~~~~~~~~~-~~~v~~~~~----~~~~~~~~~~L~~~g---I~v~~~----  353 (447)
                      +.+.+++..++++++++.|.+ .   |++++... .+. -..+++...    ..+...+.-.+...|   ..+...    
T Consensus       316 ~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~-~~~~~~~~~l~~~~~~~~~D~tkl~i~~~~~g~sG~~v~~~~~~~  394 (450)
T 3bc8_A          316 YRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTP-HNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQ  394 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCT-TCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCc-cCCCcceeecccccccccCCCceeEEEecCCCCccceeeeccccc
Confidence            777788889999999999876 3   77766421 111 111222111    223334444443333   222200    


Q ss_pred             -----CCC--C-CCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          354 -----SVP--G-DKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       354 -----~~p--~-~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                           ...  + ...-....+|=+-    .+.|.+++|++++.+.|+++....
T Consensus       395 ~~~~~~l~~~gi~~E~~~~~~i~~~----~sig~~~~di~~l~~~L~~~~~~~  443 (450)
T 3bc8_A          395 TVSGHTFRGFMSHADNYPCAYLNAA----AAIGMKMQDVDLFIKRLDKCLNIV  443 (450)
T ss_dssp             EETTEEEETTTTTSSCCSSCEEEEE----CCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHcCCeeecCCCCcEEEE----ecCCCCHHHHHHHHHHHHHHHHHH
Confidence                 000  0 0011112344443    345667999999999999987644

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.83  E-value=1.9e-18  Score=173.48  Aligned_cols=325  Identities=12%  Similarity=0.018  Sum_probs=197.9

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcC---
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK---  108 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~---  108 (447)
                      .+|.|.+++.+.+... .... ..++  ..+...+    .+++++++++...+.   .+.++||++|+..++..+..   
T Consensus        92 ~~p~v~~A~~~~~~~~-~~~~-~~~~--~~~~~~~----L~e~la~~~~~~~~~---v~~~~sGseA~~~Alk~a~~~~~  160 (457)
T 3tfu_A           92 GHPALDQALTTQLRVM-NHVM-FGGL--THEPAAR----LAKLLVDITPAGLDT---VFFSDSGSVSVEVAAKMALQYWR  160 (457)
T ss_dssp             TCHHHHHHHHHHHHHC-SCCC-SSSE--ECHHHHH----HHHHHHHHSSTTEEE---EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhc-cCcc-cccc--CCHHHHH----HHHHHHHhCCCCcCE---EEEeCcHHHHHHHHHHHHHHHHH
Confidence            4899999998877642 1111 0111  1222233    346888999765442   23357788999999887764   


Q ss_pred             ----CCC-EEEEecCCCCcccCCC------ccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhh--hCCcEEEE
Q 013217          109 ----PHD-RIMGLDLPHGGHLSHG------FMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL--FRPKLIIA  175 (447)
Q Consensus       109 ----pgd-~Vl~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~--~~~klii~  175 (447)
                          +|+ +|++.++.|.|.....      .................++++.+ .....|+++|++++++  .++++|++
T Consensus       161 ~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~d~~~le~~l~~~~~~~aavi~  239 (457)
T 3tfu_A          161 GRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPR-DYDPAYSAAFEAQLAQHAGELAAVVV  239 (457)
T ss_dssp             HTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCS-SCCHHHHHHHHHHHHHHGGGEEEEEE
T ss_pred             hcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCc-ccCHHHHHHHHHHHHhCCCCEEEEEE
Confidence                554 8888887765532000      00000000000011233333322 1123589999999873  36788888


Q ss_pred             cC-CCCCC--CCC----hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC----cccEEEeCCCcccCC--CCCceE
Q 013217          176 GA-SAYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSLRG--PRGGMI  242 (447)
Q Consensus       176 ~~-~~~~~--~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~----~~Di~~~s~~K~l~G--p~gG~i  242 (447)
                      .+ .++++  ..+    +++|+++|++||+++|+|++| .|+...+.. ..+.    ..|++++  +|.|+|  ++.|++
T Consensus       240 ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~-~g~gr~G~~-~a~~~~~~~pdiit~--sK~l~gG~~~lG~v  315 (457)
T 3tfu_A          240 EPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIA-TGFGRTGAL-FAADHAGVSPDIMCV--GKALTGGYLSLAAT  315 (457)
T ss_dssp             CSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTT-TTTTTTSSS-STHHHHTCCCSEEEE--CGGGGTTSSCCEEE
T ss_pred             eCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCc-cCCccccch-hHhHhcCCCceEEEE--ChhhhCCCcceEEE
Confidence            76 55443  333    899999999999999999996 444322211 0111    2577754  599976  588999


Q ss_pred             EeecCCcchhhHHHHhhh---c-cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC----CcE
Q 013217          243 FFKKDPVLGVELESAINN---A-VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL----GYK  314 (447)
Q Consensus       243 ~~~~~~~~~~~~~~~i~~---~-~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~  314 (447)
                      ++++      ++.+.+..   . ...+...+.+....++..++++.+..++   +.+++.++.+++.+.|.+.    ++.
T Consensus       316 ~~~~------~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~v~  386 (457)
T 3tfu_A          316 LCTA------DVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQD---WRTRITELAAGLTAGLDTARALPAVT  386 (457)
T ss_dssp             EEEH------HHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHGGGGGSTTEE
T ss_pred             EEcH------HHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHhcCCCee
Confidence            9988      77777742   1 1111222335555555556777665443   4667777888888888763    232


Q ss_pred             eeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          315 LVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       315 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                      .+.+  ...+.++++.. ..+..++.+.|.++||.++.    .      ...+|++++...+    ++|+++++++|+++
T Consensus       387 ~vr~--~G~~~~i~l~~-~~~~~~~~~~l~~~Gv~v~~----~------~~~lRi~p~~~~t----~eei~~~l~~L~~~  449 (457)
T 3tfu_A          387 DVRV--CGAIGVIECDR-PVDLAVATPAALDRGVWLRP----F------RNLVYAMPPYICT----PAEITQITSAMVEV  449 (457)
T ss_dssp             EEEE--CSSCEEEEESS-CCCHHHHHHHHHHTTEECCC----B------TTEEEECCCTTCC----HHHHHHHHHHHHHH
T ss_pred             eeec--CCeEEEEEECC-cccHHHHHHHHHHCCeEEEe----c------CCEEEEECCCCCC----HHHHHHHHHHHHHH
Confidence            2222  23345666643 23567888888889999853    1      2589999887777    99999999999998


Q ss_pred             HHHH
Q 013217          395 VEIT  398 (447)
Q Consensus       395 l~~~  398 (447)
                      +...
T Consensus       450 l~~~  453 (457)
T 3tfu_A          450 ARLV  453 (457)
T ss_dssp             HHHC
T ss_pred             HHHh
Confidence            8743

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.83  E-value=8.6e-18  Score=168.65  Aligned_cols=331  Identities=13%  Similarity=0.023  Sum_probs=191.8

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc----
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  107 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~----  107 (447)
                      .+|.|.+++...+.+.   ++...  ....+...+    .+++++++++.+.+ +   +.++||++|+..++..+.    
T Consensus        66 ~~p~v~~A~~~~~~~~---~~~~~--~~~~~~~~~----la~~l~~~~~~~~~-v---~~~~ggseA~~~al~~~~~~~~  132 (452)
T 3n5m_A           66 GRKELAEAAYKQLQTL---SYFPM--SQSHEPAIK----LAEKLNEWLGGEYV-I---FFSNSGSEANETAFKIARQYYA  132 (452)
T ss_dssp             CCHHHHHHHHHHHTTC---CCCCT--TSEEHHHHH----HHHHHHHHHTSCEE-E---EEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhc---CCccc--ccCCHHHHH----HHHHHHHhCCCCce-E---EEeCchHHHHHHHHHHHHHHHH
Confidence            3799999998877542   11111  112222333    34678888886653 2   335777899999998876    


Q ss_pred             -C---CCCEEEEecCCCCcccCC-----CccccccccccccceeEEEecccCCCC---------CCCCHHHHHHHhh---
Q 013217          108 -K---PHDRIMGLDLPHGGHLSH-----GFMTPKRRVSGTSIYFESMPYRLDEST---------GLVDYDMLEKTAI---  166 (447)
Q Consensus       108 -~---pgd~Vl~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~id~~~l~~~~~---  166 (447)
                       .   ++|+|++.++.|.|....     +.........-....+..++.+.....         +..++++|+++++   
T Consensus       133 ~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~  212 (452)
T 3n5m_A          133 QKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWEL  212 (452)
T ss_dssp             TTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHC
T ss_pred             hcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcC
Confidence             5   889999999887654210     000000000000001122221110000         0112899999987   


Q ss_pred             hhCCcEEEEcCC-CCCC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-CCC-CC-cccEEEeCCCcccC-C
Q 013217          167 LFRPKLIIAGAS-AYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-ADP-FK-YCDVVTTTTHKSLR-G  236 (447)
Q Consensus       167 ~~~~klii~~~~-~~~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~~~-~~-~~Di~~~s~~K~l~-G  236 (447)
                      ..++++|+++++ ++++ ..+    +++|+++|++||+++|+|++|. |+...+.. ... .+ ..|++++  +|+++ |
T Consensus       213 ~~~~~~vi~ep~~~n~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~g~~g~~~~~~~~~~~~di~t~--sK~l~~G  289 (452)
T 3n5m_A          213 SETIAAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALLISDEVIC-GFGRTGKAFGFMNYDVKPDIITM--AKGITSA  289 (452)
T ss_dssp             GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTCCCSEEEE--CGGGGTT
T ss_pred             CCCEEEEEEccccCCCCeeeCCHHHHHHHHHHHHHcCCEEEEecchh-CCCcccccchhhhcCCCCCEEee--cccccCC
Confidence            236788888865 3455 454    8999999999999999999974 43222211 000 11 2577765  48874 5


Q ss_pred             -CCCceEEeecCCcchhhHHHHhhh----c-cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH
Q 013217          237 -PRGGMIFFKKDPVLGVELESAINN----A-VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE  310 (447)
Q Consensus       237 -p~gG~i~~~~~~~~~~~~~~~i~~----~-~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~  310 (447)
                       ++.|++++++      ++.+.+..    . ...+...+.+...+++..++++.+..+   ++.+++.++.+++++.|.+
T Consensus       290 ~~~ig~~~~~~------~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~  360 (452)
T 3n5m_A          290 YLPLSATAVKR------EIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIENE---NLIERSAQMGSLLLEQLKE  360 (452)
T ss_dssp             SSCCEEEEEEH------HHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHH
T ss_pred             CcceEEEEECH------HHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHH
Confidence             5669999988      78777743    1 111222233455555555577765432   3456677777777777765


Q ss_pred             C--C---cEeeeCCCCCeeEEecCCCCCC-----C---HHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccC
Q 013217          311 L--G---YKLVSGGSDNHLVLVDLRPMGI-----D---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTR  377 (447)
Q Consensus       311 ~--g---~~~~~~~~~~~~~~v~~~~~~~-----~---~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~  377 (447)
                      .  .   +..+.+ . ..++++++.....     +   ..++.+.|.++||.+.....+.   +...+.||++++..++ 
T Consensus       361 ~~~~~~~~~~~~~-~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~---~~~~~~iRi~~~~~~t-  434 (452)
T 3n5m_A          361 EIGEHPLVGDIRG-K-GLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTT---AGYNNILTLAPPLVIS-  434 (452)
T ss_dssp             HHTTCTTEEEEEE-S-SSCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSS---TTCCCEEEECCCTTCC-
T ss_pred             HHhcCCCeEEEEE-E-EEEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCccc---CCCCCEEEEECCCCCC-
Confidence            2  2   222222 2 2233444421110     1   2357777888999997543221   1125689999887777 


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q 013217          378 GFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       378 g~~~~di~~l~~~i~~~l~  396 (447)
                         ++|++++++.|+++++
T Consensus       435 ---~e~i~~~l~~l~~~l~  450 (452)
T 3n5m_A          435 ---SEEIAFVIGTLKTAME  450 (452)
T ss_dssp             ---HHHHHHHHHHHHHHHT
T ss_pred             ---HHHHHHHHHHHHHHHH
Confidence               9999999999988874

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.83  E-value=1e-18  Score=174.62  Aligned_cols=321  Identities=15%  Similarity=0.082  Sum_probs=191.8

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCC-CccceeeecCCcHHHHHHHHHHh--cC
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE-NKWGVNVQPLSGSPANFEVYTAI--LK  108 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~-~~~~~~v~~~sGs~a~~~~~~al--~~  108 (447)
                      .+|.+.+++.+.+...  ..|...  .+..+...+    .+++++++++... +.   .+.+++|++|+..++.++  ..
T Consensus        60 ~~p~v~~a~~~~~~~~--~~~~~~--~~~~~~~~~----l~~~la~~~~~~~~~~---v~~~~ggsea~~~al~~~~~~~  128 (439)
T 3dxv_A           60 GHPAIVAAVSAAAANP--AGATIL--SASNAPAVT----LAERLLASFPGEGTHK---IWFGHSGSDANEAAYRAIVKAT  128 (439)
T ss_dssp             SCHHHHHHHHHHHHSC--SCSCSS--SSEEHHHHH----HHHHHHHTTTCTTTEE---EEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhc--cCcccc--ccCCHHHHH----HHHHHHHhCCCCCCCE---EEEeCCHHHHHHHHHHHHHHHh
Confidence            5899999998877542  122211  122232333    3468888886544 32   244577889999998875  34


Q ss_pred             CCCEEEEecCCCCcccCCCcccccccccccccee------------EEEecccCCCCCCC-----CHHHHHHHhh---hh
Q 013217          109 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYF------------ESMPYRLDESTGLV-----DYDMLEKTAI---LF  168 (447)
Q Consensus       109 pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~------------~~~~~~~~~~~~~i-----d~~~l~~~~~---~~  168 (447)
                      ++++|++.++.+.+....       .+...+...            .+..++.+ +.+..     |+++|+++++   ..
T Consensus       129 ~~~~vi~~~~~yhg~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~le~~l~~~~~~  200 (439)
T 3dxv_A          129 GRSGVIAFAGAYHGCTVG-------SMAFSGHSVQADAAKADGLILLPYPDPYR-PYRNDPTGDAILTLLTEKLAAVPAG  200 (439)
T ss_dssp             SCCEEEEETTCCCCSSHH-------HHCC-------------CEEEECCCCSSS-CBTTBTTSHHHHHHHHHHHHTSCTT
T ss_pred             CCCEEEEECCCCCCCcHH-------HHhhcCCCchhhccccCCCCCCcEEcCCC-cccccccHHHHHHHHHHHHHhcCCC
Confidence            678888888776443211       011111100            11112221 11112     7999999984   33


Q ss_pred             CCcEEEEcCCCCC-C-CCC----hHHHHHHHHHhCCEEEEehhhhcccccccc-CCCC-CC-cccEEEeCCCcccC-CCC
Q 013217          169 RPKLIIAGASAYP-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASV-VADP-FK-YCDVVTTTTHKSLR-GPR  238 (447)
Q Consensus       169 ~~klii~~~~~~~-~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~~~-~~-~~Di~~~s~~K~l~-Gp~  238 (447)
                      ++++|++.+++++ + ..+    +++|.++|++||+++|+|++|. |+...+. .... .. ..|++  |++|+++ |.|
T Consensus       201 ~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~-g~g~~g~~~~~~~~~~~~di~--s~sK~~~~G~r  277 (439)
T 3dxv_A          201 SIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKV-GLARSGRLHCFEHEGFVPDIL--VLGKGLGGGLP  277 (439)
T ss_dssp             CEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-CTTTTSSSSGGGGTTCCCSEE--EECGGGGTTSC
T ss_pred             CEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCchhhHHHhcCCCCCEE--EEcchhcCCcc
Confidence            6788888754433 3 556    8999999999999999999985 5432221 1100 11 25777  5569885 567


Q ss_pred             CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC----C-c
Q 013217          239 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL----G-Y  313 (447)
Q Consensus       239 gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g-~  313 (447)
                      .|++++++      ++.+.+......+..  .+...+++..++++.+..   +++.+++.++.+++.+.|.+.    + +
T Consensus       278 iG~~~~~~------~~~~~~~~~~~~~t~--~~~~~~~aa~aal~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~  346 (439)
T 3dxv_A          278 LSAVIAPA------EILDCASAFAMQTLH--GNPISAAAGLAVLETIDR---DDLPAMAERKGRLLRDGLSELAKRHPLI  346 (439)
T ss_dssp             CEEEEEEH------HHHTSCSSSSCCTTT--TCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHHCTTE
T ss_pred             eEEEEECH------HHHhhhcCCCcCCCc--ccHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            79999988      677766654222222  344455555556665433   234666777777777777652    2 2


Q ss_pred             EeeeCCCCCeeEEecCC-------CCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHH
Q 013217          314 KLVSGGSDNHLVLVDLR-------PMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVA  386 (447)
Q Consensus       314 ~~~~~~~~~~~~~v~~~-------~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~  386 (447)
                      ....+  ...++++++.       +...+..++.+.|.++||.+..+    .   ..++.+|++++..++    ++|+++
T Consensus       347 ~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----~---~~~~~iRi~~~~~~t----~e~i~~  413 (439)
T 3dxv_A          347 GDIRG--RGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYV----G---MNGNVLEFTPPLTIT----ETDIHK  413 (439)
T ss_dssp             EEEEE--ETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEE----S---TTSCEEEECCCTTCC----HHHHHH
T ss_pred             EEEEE--EEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeec----C---CCCCEEEEECCCCCC----HHHHHH
Confidence            22222  2334455442       11123456777888889998643    1   123689999887777    999999


Q ss_pred             HHHHHHHHHHHH
Q 013217          387 IADFIHEGVEIT  398 (447)
Q Consensus       387 l~~~i~~~l~~~  398 (447)
                      +.+.|++++...
T Consensus       414 ~l~~l~~~l~~~  425 (439)
T 3dxv_A          414 ALDLLDRAFSEL  425 (439)
T ss_dssp             HHHHHHHHHHTG
T ss_pred             HHHHHHHHHHHH
Confidence            999999988754

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.83  E-value=4.3e-18  Score=169.79  Aligned_cols=331  Identities=15%  Similarity=0.073  Sum_probs=193.4

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc--CC
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--KP  109 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~--~p  109 (447)
                      .+|.|.+++...+... .  +....| . .+...++    +++++++++.+.+.+   +.+++|++|+..++..+.  ..
T Consensus        60 ~~p~v~~a~~~~~~~~-~--~~~~~~-~-~~~~~~l----~~~la~~~~~~~~~v---~~~~gg~ea~~~a~~~~~~~~~  127 (433)
T 1zod_A           60 CHPEIVSVIGEYAGKL-D--HLFSEM-L-SRPVVDL----ATRLANITPPGLDRA---LLLSTGAESNEAAIRMAKLVTG  127 (433)
T ss_dssp             TCHHHHHHHHHHHHHC-C--CCCTTC-C-CHHHHHH----HHHHHHHSCTTCCEE---EEESCHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHhC-c--cccccc-C-CHHHHHH----HHHHHHhCCCCcCEE---EEeCchHHHHHHHHHHHHHhhC
Confidence            3899999998877542 1  111111 1 1222333    357888898765432   334667799999887653  34


Q ss_pred             CCEEEEecCCCCcccCCCc----cccccccccccceeEEEecccCCC---------CCCCCHHHHHHHhhh---hCCcEE
Q 013217          110 HDRIMGLDLPHGGHLSHGF----MTPKRRVSGTSIYFESMPYRLDES---------TGLVDYDMLEKTAIL---FRPKLI  173 (447)
Q Consensus       110 gd~Vl~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~---------~~~id~~~l~~~~~~---~~~kli  173 (447)
                      +|+|++.++.|.|......    .............+..++++....         .+.+|+++|++++++   .++++|
T Consensus       128 ~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~v  207 (433)
T 1zod_A          128 KYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAF  207 (433)
T ss_dssp             CCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEE
T ss_pred             CCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEE
Confidence            6899999987754321000    000000000001233443321100         112579999999874   366788


Q ss_pred             EEcCCCCC-C-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-CCC-CC-cccEEEeCCCcccC-CCCCceEE
Q 013217          174 IAGASAYP-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-ADP-FK-YCDVVTTTTHKSLR-GPRGGMIF  243 (447)
Q Consensus       174 i~~~~~~~-~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~~~-~~-~~Di~~~s~~K~l~-Gp~gG~i~  243 (447)
                      ++++.+++ + ..+    +++|.++|++||+++|+|++|. |+...+.. ... .. ..|++  |++|+|+ |.|.|+++
T Consensus       208 i~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-~~g~~g~~~~~~~~~~~~di~--s~sK~~~~G~~ig~~~  284 (433)
T 1zod_A          208 IAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQT-GVGRTGTMFACQRDGVTPDIL--TLSKTLGAGLPLAAIV  284 (433)
T ss_dssp             EECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSTHHHHTCCCSEE--EECHHHHTTSSCEEEE
T ss_pred             EEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CCCcCchHhHHhhcCCCCCEE--EecccccCCCCeeEEE
Confidence            87754443 4 344    8999999999999999999985 33222210 000 01 24666  4559985 45669999


Q ss_pred             eecCCcchhhHHHHhhhccCC-CCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC----C-cEeee
Q 013217          244 FKKDPVLGVELESAINNAVFP-GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL----G-YKLVS  317 (447)
Q Consensus       244 ~~~~~~~~~~~~~~i~~~~~~-~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g-~~~~~  317 (447)
                      +++      ++.+.+...... +...+.+....++..++++.+.+.+   +.+++.++++++.+.|++.    + +..+.
T Consensus       285 ~~~------~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~~~~---~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~  355 (433)
T 1zod_A          285 TSA------AIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDG---LVARANVMGDRLRRGLLDLMERFDCIGDVR  355 (433)
T ss_dssp             ECH------HHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred             EhH------HHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence            987      777777653211 1112234555555556777654333   4566777788888877652    2 22222


Q ss_pred             CCCCCeeEEecCCCC-------CCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHH
Q 013217          318 GGSDNHLVLVDLRPM-------GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADF  390 (447)
Q Consensus       318 ~~~~~~~~~v~~~~~-------~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~  390 (447)
                      +  ...++++++...       .....++.+.|.++||.+..+    .... .++.+|++++..++    ++|++++++.
T Consensus       356 ~--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----~~~~-~~~~lRi~~~~~~t----~~~i~~~l~~  424 (433)
T 1zod_A          356 G--RGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIV----QLPG-MGGVFRIAPPLTVS----EDEIDLGLSL  424 (433)
T ss_dssp             E--ETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEE----CCTT-SCCEEEECCCTTCC----HHHHHHHHHH
T ss_pred             E--EEEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEecc----CCCC-CCCEEEEECCcCCC----HHHHHHHHHH
Confidence            2  233456665321       123566888888899998643    2111 13689999887777    9999999999


Q ss_pred             HHHHHHH
Q 013217          391 IHEGVEI  397 (447)
Q Consensus       391 i~~~l~~  397 (447)
                      |++++..
T Consensus       425 l~~~l~~  431 (433)
T 1zod_A          425 LGQAIER  431 (433)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988753

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.82  E-value=9.6e-19  Score=172.40  Aligned_cols=216  Identities=18%  Similarity=0.136  Sum_probs=147.6

Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccc-cccc
Q 013217           60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRR-VSGT  138 (447)
Q Consensus        60 g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~-~~~~  138 (447)
                      +++...++|    +++++++|.+.     .+.++||++|+.+ +.++++|||+|++.++.|++.+....    .. +...
T Consensus        65 ~~p~~~~l~----~~la~l~g~~~-----~~~~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~----~~~~~~~  130 (400)
T 3nmy_A           65 HNPTRFAYE----RCVAALEGGTR-----AFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFE----RVRRRTA  130 (400)
T ss_dssp             CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHH----HTHHHHH
T ss_pred             CCHHHHHHH----HHHHHHhCCCC-----EEEecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHH----HhhHhhc
Confidence            455666676    57888999763     3456899999887 67789999999999998876532110    00 1112


Q ss_pred             cceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccC
Q 013217          139 SIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV  216 (447)
Q Consensus       139 g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~  216 (447)
                      |.  +++.++.      .|++++++++++ +|++|++.+++||+  ..|+++|+++|+++|+++++|++|..+...    
T Consensus       131 g~--~~~~v~~------~d~~~l~~~i~~-~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~----  197 (400)
T 3nmy_A          131 GL--DFSFVDL------TDPAAFKAAIRA-DTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQ----  197 (400)
T ss_dssp             CC--EEEEECT------TSHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHC----
T ss_pred             Ce--EEEEECC------CCHHHHHHHhcc-CCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccC----
Confidence            43  4445433      289999999987 89999998777775  779999999999999999999998755432    


Q ss_pred             CCCCC-cccEEEeCCCcccCCC---CCc-eEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHH
Q 013217          217 ADPFK-YCDVVTTTTHKSLRGP---RGG-MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK  291 (447)
Q Consensus       217 ~~~~~-~~Di~~~s~~K~l~Gp---~gG-~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~  291 (447)
                       .|+. ++|+++.|+||+|+|+   .|| +++++++     ++.+++....... .++++...   .+.+++.+.  .+.
T Consensus       198 -~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~-----~~~~~l~~~~~~~-g~~~~~~~---a~~~l~~l~--~l~  265 (400)
T 3nmy_A          198 -RPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNA-----ELAEQMAFLQNSI-GGVQGPFD---SFLALRGLK--TLP  265 (400)
T ss_dssp             -CGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCH-----HHHHHHHHHHHHH-CCBCCHHH---HHHHHHHHT--THH
T ss_pred             -ChhhcCCcEEEecCccccCCCCCcceeEEEEeCCH-----HHHHHHHHHHHhc-CCCCCHHH---HHHHHHhHh--HHH
Confidence             2333 5899999999999876   457 5666553     5666554322111 11222222   122333332  356


Q ss_pred             HHHHHHHHHHHHHHHHHHHC-CcE
Q 013217          292 VYQNKVVSNCRALASRLVEL-GYK  314 (447)
Q Consensus       292 ~~~~~~~~~~~~l~~~L~~~-g~~  314 (447)
                      .++++..+|++.+.+.|++. .+.
T Consensus       266 ~r~~~~~~~a~~l~~~L~~~p~v~  289 (400)
T 3nmy_A          266 LRMRAHCENALALAQWLETHPAIE  289 (400)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTEE
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCEe
Confidence            67888999999999999873 444

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.82  E-value=1.7e-17  Score=166.84  Aligned_cols=330  Identities=12%  Similarity=0.038  Sum_probs=191.1

Q ss_pred             CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcC----
Q 013217           33 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK----  108 (447)
Q Consensus        33 ~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~----  108 (447)
                      +|.|.+++.+.+.+. ...++...+  ..+...+    ..++++++++.+.+.   .+..+||++|+..++.++..    
T Consensus        69 ~p~v~~A~~~~~~~~-~~~~~~~~~--~~~~~~~----la~~l~~~~~~~~~~---v~~~~gGseA~~~al~~~~~~~~~  138 (460)
T 3gju_A           69 RQKIADAIATQAKNL-AYYHAYVGH--GTEASIT----LAKMIIDRAPKGMSR---VYFGLSGSDANETNIKLIWYYNNV  138 (460)
T ss_dssp             CHHHHHHHHHHHHHH-SCCCCCTTC--CCHHHHH----HHHHHHHHSCTTEEE---EEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhc-ccccccccc--CCHHHHH----HHHHHHhhCCCCcCE---EEEeCchHHHHHHHHHHHHHHHHh
Confidence            799999988777542 112221111  1222223    346788887665542   23356778999999988763    


Q ss_pred             ----CCCEEEEecCCCCcccCC-----CccccccccccccceeEEEeccc--CCCCCCCC--------HHHHHHHhhh--
Q 013217          109 ----PHDRIMGLDLPHGGHLSH-----GFMTPKRRVSGTSIYFESMPYRL--DESTGLVD--------YDMLEKTAIL--  167 (447)
Q Consensus       109 ----pgd~Vl~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~id--------~~~l~~~~~~--  167 (447)
                          ++++|++.++.|.|....     +...+..........+..++++.  ..++...|        +++|++++++  
T Consensus       139 ~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~  218 (460)
T 3gju_A          139 LGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEG  218 (460)
T ss_dssp             TTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcC
Confidence                568999999887554210     00000000001111223333222  10111233        6889988863  


Q ss_pred             -hCCcEEEEcCCCCCC--CCC----hHHHHHHHHHhCCEEEEehhhhcccccccc-CCCC-CC-cccEEEeCCCcccCC-
Q 013217          168 -FRPKLIIAGASAYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASV-VADP-FK-YCDVVTTTTHKSLRG-  236 (447)
Q Consensus       168 -~~~klii~~~~~~~~--~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~~~-~~-~~Di~~~s~~K~l~G-  236 (447)
                       .++++|++.++++++  ..+    +++|+++|++||+++|+|++|. |+...+. .... .+ ..|++++|  |+|+| 
T Consensus       219 ~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~gr~g~~~~~~~~~~~pdi~t~s--K~l~gG  295 (460)
T 3gju_A          219 PETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVT-GFGRLGTMFGSDHYGIKPDLITIA--KGLTSA  295 (460)
T ss_dssp             GGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSCHHHHHTCCCSEEEEC--GGGTTT
T ss_pred             CCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcccccchHhhcCCCCCeeeee--hhhcCC
Confidence             356788887554443  344    8999999999999999999974 4422221 0000 01 24777655  99976 


Q ss_pred             -CCCceEEeecCCcchhhHHHHhhh------ccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHH
Q 013217          237 -PRGGMIFFKKDPVLGVELESAINN------AVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLV  309 (447)
Q Consensus       237 -p~gG~i~~~~~~~~~~~~~~~i~~------~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~  309 (447)
                       +|.|++++++      ++.+.+..      ....+...+.+....++..++++.+..++   +.+++.++.+++++.|.
T Consensus       296 ~~~lg~v~~~~------~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~~~~~l~  366 (460)
T 3gju_A          296 YAPLSGVIVAD------RVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMD---LVTNAGETGAYFRAELA  366 (460)
T ss_dssp             SSCCEEEEEEH------HHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECH------HHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHH
Confidence             6789999988      77777742      11222222334555555556777654333   35555666666666653


Q ss_pred             H----CC-cEeeeCCCCCeeEEecCCCCC----------CCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCcc
Q 013217          310 E----LG-YKLVSGGSDNHLVLVDLRPMG----------IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAM  374 (447)
Q Consensus       310 ~----~g-~~~~~~~~~~~~~~v~~~~~~----------~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~  374 (447)
                      +    .+ +..+.+ . ..++++.+....          ....++.+.|.++||.+...    .    ..+.+|++++..
T Consensus       367 ~~l~~~~~~~~~~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----~----~~~~iRi~~~~~  436 (460)
T 3gju_A          367 KAVGGHKNVGEVRG-D-GMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAM----P----QGDILGFAPPLC  436 (460)
T ss_dssp             HHHTTSTTEEEEEE-E-TTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEC----S----SSCEEEECCCTT
T ss_pred             HHHhcCCCeEEEee-e-eEEEEEEEccCccccccccchHHHHHHHHHHHHHCCeEEecC----C----CCCEEEEECCCC
Confidence            3    22 322222 1 223444443211          01456778888899988642    1    135899998877


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          375 TTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       375 ~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      ++    ++|++++++.|+++++..
T Consensus       437 ~t----~e~i~~~l~~l~~~l~~~  456 (460)
T 3gju_A          437 LT----REQADIVVSKTADAVKSV  456 (460)
T ss_dssp             CC----HHHHHHHHHHHHHHHHHH
T ss_pred             CC----HHHHHHHHHHHHHHHHHH
Confidence            77    999999999999988753

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.82  E-value=5.1e-19  Score=171.38  Aligned_cols=310  Identities=12%  Similarity=0.097  Sum_probs=196.0

Q ss_pred             HHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCC---C-CEEEEecCCCCcccCCCccccccccccccc
Q 013217           65 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKP---H-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSI  140 (447)
Q Consensus        65 ~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~p---g-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~  140 (447)
                      ..-+..+.+|++.+ |.+...-.+.|  ..+|.++.+++++.+++   | |+|+++...|.+.+        +.+.+.|.
T Consensus       116 ~ltn~l~ld~L~~~-G~~~~~~~flV--nGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~--------kAliL~Gl  184 (501)
T 3hl2_A          116 KITNSLVLDIIKLA-GVHTVANCFVV--PMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCF--------KSMITAGF  184 (501)
T ss_dssp             HHHHHHHHHHHHHT-TCTTCCEEEEE--SSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHH--------HHHHHTTC
T ss_pred             HHHHHHHHHHHHHc-CCCCCCcEEEE--CcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHH--------HHHHHcCC
Confidence            34455677888877 99854221222  33345666666666553   4 99999877665543        35567777


Q ss_pred             eeEEEecccCCCCCCCCHHHHHHHhhhhCCc--EEEEc-CCCC-CC-CCChHHHHHHHHHhCCEEEEehhhhcccccccc
Q 013217          141 YFESMPYRLDESTGLVDYDMLEKTAILFRPK--LIIAG-ASAY-PR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASV  215 (447)
Q Consensus       141 ~~~~~~~~~~~~~~~id~~~l~~~~~~~~~k--lii~~-~~~~-~~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~  215 (447)
                      ....++...+++...+|+++|+++++++.++  ++++. .+.| |+ +.|+++|+++|++||++++||+||.+.+.....
T Consensus       185 ~Pv~V~p~~d~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~  264 (501)
T 3hl2_A          185 EPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMH  264 (501)
T ss_dssp             EEEEECEEEETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHH
T ss_pred             eEEEEeeeecccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhh
Confidence            5555554444455789999999999886333  33333 4555 33 579999999999999999999998765533211


Q ss_pred             CC-CCCC-c-ccEEEeCCCcccCCCCCc-eEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHH
Q 013217          216 VA-DPFK-Y-CDVVTTTTHKSLRGPRGG-MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK  291 (447)
Q Consensus       216 ~~-~~~~-~-~Di~~~s~~K~l~Gp~gG-~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~  291 (447)
                      .+ ..+. + +|+++.|+||++..|-|| +++++++     ++.+++.. .+|+.++   ......++.++..+...+|+
T Consensus       265 lp~sA~~~GrAD~vVqS~HK~llvpIGG~ii~~~d~-----e~l~~~~~-~yPGr~S---~Spsldl~~tLL~lGr~Gy~  335 (501)
T 3hl2_A          265 LIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFND-----SFIQEISK-MYPGRAS---ASPSLDVLITLLSLGSNGYK  335 (501)
T ss_dssp             HHHHHHHHSCCCEEEEEHHHHHCCCSSCEEEEESCH-----HHHHHHHH-TSCSCBC---SHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHhcCCCcEEEecccccceeecCceEEEeCCH-----HHHHHHHH-hCCCCCC---CcHHHHHHHHHHHHHHHHHH
Confidence            11 1112 4 999999999999888775 4446664     66666644 4565542   22234455566667778899


Q ss_pred             HHHHHHHHHHHHHHHHHHH----CCcEeeeCCCCCeeE-EecCCCCC----CCHHHHHHHHhhcCeEEccCCCCCC----
Q 013217          292 VYQNKVVSNCRALASRLVE----LGYKLVSGGSDNHLV-LVDLRPMG----IDGARVEKILDMASITLNKNSVPGD----  358 (447)
Q Consensus       292 ~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~~~~~~-~v~~~~~~----~~~~~~~~~L~~~gI~v~~~~~p~~----  358 (447)
                      +++++..+++++|++.|++    .|-+++.. ..|.+. -+++...+    ....++-..|-.++|.-.....+++    
T Consensus       336 ~ll~e~~ela~~L~~~L~~la~~~ge~ll~~-~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i  414 (501)
T 3hl2_A          336 KLLKERKEMFSYLSNQIKKLSEAYNERLLHT-PHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTV  414 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTCCBCCC-TTCSSEEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEEECTTCCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcChhhcCC-CCCceeEEEecccccccccccHHHHHHHHHhcCCCcceeecCCCceEE
Confidence            9999999999999999987    45555542 224332 23443221    1233555666665553211101111    


Q ss_pred             -----------CCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHHH
Q 013217          359 -----------KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITL  399 (447)
Q Consensus       359 -----------~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~  399 (447)
                                 ...+...++-+.    ...||+++|++.+.+.|++++....
T Consensus       415 ~g~~f~~~g~h~~~~~~~yl~~a----~aiG~~~~~v~~~~~~l~~~~~~~~  462 (501)
T 3hl2_A          415 SGYTFRGFMSHTNNYPCAYLNAA----SAIGMKMQDVDLFIKRLDRCLKAVR  462 (501)
T ss_dssp             TTEEESSTTTTSSCCSSCEEEEE----CCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeeecCcccCCCCCCchHHHHH----HHcCCCHHHHHHHHHHHHHHHHHHH
Confidence                       011222344443    3468899999999999999998764

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.82  E-value=2.8e-17  Score=165.77  Aligned_cols=328  Identities=11%  Similarity=0.002  Sum_probs=196.1

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcC---
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK---  108 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~---  108 (447)
                      .+|.|.+|+.+.+.+ +..+++. .  +..+...++    .++++++++.+.+.   .+.++||++|+..++..+..   
T Consensus        71 ~~p~v~~A~~~~l~~-~~~~~~~-~--~~~~~~~~l----a~~l~~~~~~~~~~---v~~~~sGseA~~~Aik~a~~~~~  139 (476)
T 3i5t_A           71 GRREIVDAMAHQAMV-LPYASPW-Y--MATSPAARL----AEKIATLTPGDLNR---IFFTTGGSTAVDSALRFSEFYNN  139 (476)
T ss_dssp             CCHHHHHHHHHHHHH-CCCCCTT-T--CBCHHHHHH----HHHHHTTSSTTCCE---EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHh-ccCcccC-c--cCCHHHHHH----HHHHHhcCCCCcCE---EEEeCchHHHHHHHHHHHHHHHH
Confidence            489999999887764 2222221 1  122323333    36888888755442   23457888999999888753   


Q ss_pred             -----CCCEEEEecCCCCcccCC-----CccccccccccccceeEEEecccCCCCCCCC--------HHHHHHHhhh---
Q 013217          109 -----PHDRIMGLDLPHGGHLSH-----GFMTPKRRVSGTSIYFESMPYRLDESTGLVD--------YDMLEKTAIL---  167 (447)
Q Consensus       109 -----pgd~Vl~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id--------~~~l~~~~~~---  167 (447)
                           .+++|++.++.|.|....     +...++.........+..++++........|        +++|++++++   
T Consensus       140 ~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~  219 (476)
T 3i5t_A          140 VLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGP  219 (476)
T ss_dssp             HTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCG
T ss_pred             hcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCC
Confidence                 367999998887554210     0000000000001112333322211111122        7899988864   


Q ss_pred             hCCcEEEEcCCCCC-C-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-C-C-CCC-cccEEEeCCCcccCC-
Q 013217          168 FRPKLIIAGASAYP-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-D-PFK-YCDVVTTTTHKSLRG-  236 (447)
Q Consensus       168 ~~~klii~~~~~~~-~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~-~~~-~~Di~~~s~~K~l~G-  236 (447)
                      .++++|++.+++++ + ..+    +++|+++|++||+++|+|++|. |+...+.. . . ..+ ..|++++|  |+++| 
T Consensus       220 ~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~-g~gr~G~~~~~~~~~~v~pdi~t~s--K~l~~G  296 (476)
T 3i5t_A          220 DTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVT-GFGRCGEWFASEKVFGVVPDIITFA--KGVTSG  296 (476)
T ss_dssp             GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSCHHHHTTCCCCSEEEEC--GGGGTT
T ss_pred             CCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc-CCccccCceeeecccCCCcchhhhh--hhhcCC
Confidence            35678888754443 3 343    8999999999999999999984 44322211 0 0 111 25788765  99864 


Q ss_pred             -CCCceEEeecCCcchhhHHHHhhhc------cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHH
Q 013217          237 -PRGGMIFFKKDPVLGVELESAINNA------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLV  309 (447)
Q Consensus       237 -p~gG~i~~~~~~~~~~~~~~~i~~~------~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~  309 (447)
                       .+.|++++++      ++.+.+...      ...+...+.+...+++..++++.+..+   ++.+++.++.+++.+.|+
T Consensus       297 ~~plg~v~~~~------~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~---~~~~~~~~~~~~l~~~L~  367 (476)
T 3i5t_A          297 YVPLGGLAISE------AVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMERE---GIVDQAREMADYFAAALA  367 (476)
T ss_dssp             SSCCEEEEECH------HHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHH
T ss_pred             CcCeEEEEECH------HHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHH
Confidence             5779999987      787777643      122222233555555555677765433   346777888888888887


Q ss_pred             HCC----cEeeeCCCCCeeEEecCCCCCC----------CHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccc
Q 013217          310 ELG----YKLVSGGSDNHLVLVDLRPMGI----------DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMT  375 (447)
Q Consensus       310 ~~g----~~~~~~~~~~~~~~v~~~~~~~----------~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~  375 (447)
                      +.+    +..+.+ . ..++.+++.....          ....+.+.|.++||.+...          .+.+|++++..+
T Consensus       368 ~l~~~~~v~~v~~-~-G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----------g~~iRi~p~l~~  435 (476)
T 3i5t_A          368 SLRDLPGVAETRS-V-GLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPL----------GDLCVISPPLII  435 (476)
T ss_dssp             TTTTSTTEEEEEE-E-TTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTTEECEEE----------TTEEEECCCTTC
T ss_pred             HHhcCCCeEEEEe-c-CceeEEEEecCccccccccchhHHHHHHHHHHHHCCCEEEec----------CCEEEEECCCCC
Confidence            632    222221 1 2234455543211          1346777788889998541          258999988777


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHH
Q 013217          376 TRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       376 ~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      +    ++|++++++.|++++...
T Consensus       436 t----~e~i~~~l~~l~~~l~~~  454 (476)
T 3i5t_A          436 S----RAQIDEMVAIMRQAITEV  454 (476)
T ss_dssp             C----HHHHHHHHHHHHHHHHHH
T ss_pred             C----HHHHHHHHHHHHHHHHHH
Confidence            7    999999999999998765

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=99.82  E-value=9.4e-19  Score=172.79  Aligned_cols=333  Identities=15%  Similarity=0.134  Sum_probs=194.3

Q ss_pred             cCeeEecC-------CCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCC-Cccceeeec
Q 013217           21 KSLELIAS-------ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE-NKWGVNVQP   92 (447)
Q Consensus        21 ~~i~l~~~-------~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~-~~~~~~v~~   92 (447)
                      ..++|-.+       ..++.|.|++|....+.+....+|+..      ....++.+.+.++   ++|-.. ..-...++.
T Consensus        45 ~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~------~G~p~lr~aia~~---~~g~~~~~~~~~~~qt  115 (420)
T 4h51_A           45 PKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPI------SGYQPFIDEAVKI---IYGNTVELENLVAVQT  115 (420)
T ss_dssp             SCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCT------TCCHHHHHHHHHH---HHC---CGGGEEEEEE
T ss_pred             CCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCc------CChHHHHHHHHHH---hcCCCccccccceeee
Confidence            45888655       235679999998776655433344443      2233454333333   344331 111134556


Q ss_pred             CCcHHHHHHHHH----HhcCCCCEEEEecCCCCcccCCCccccccccccccce-eEEEecccCCCCCCCCHHHHHHHhhh
Q 013217           93 LSGSPANFEVYT----AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDESTGLVDYDMLEKTAIL  167 (447)
Q Consensus        93 ~sGs~a~~~~~~----al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~id~~~l~~~~~~  167 (447)
                      .+||.|+..++.    ++++|||+|++++|.++.|..        .+...|.. +...++ .+++++.+|++.+.+.+..
T Consensus       116 ~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~--------i~~~aG~~~V~~~~~-~~~~~~~~d~~~~~~~l~~  186 (420)
T 4h51_A          116 LSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYG--------VVKAAGWKNICTYAY-YDPKTVSLNFEGMKKDILA  186 (420)
T ss_dssp             EHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHH--------HHHHTTCCCEEEEEC-EEGGGTEECHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHH--------HHHHcCCeEEEeecc-ccccccCCCHHHHHHHHhc
Confidence            667766655443    346799999999999887642        23445542 222232 3345678999999887764


Q ss_pred             h--CCcEEEEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC--------cccEEEeCCCc
Q 013217          168 F--RPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--------YCDVVTTTTHK  232 (447)
Q Consensus       168 ~--~~klii~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~--------~~Di~~~s~~K  232 (447)
                      .  ++++++++.++||+  ..   .+++|.++|+++++++++|+++ .|+.+.+....+..        ..-+++.|++|
T Consensus       187 ~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK  265 (420)
T 4h51_A          187 APDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAY-QGYASGSLDTDAYAARLFARRGIEVLLAQSFSK  265 (420)
T ss_dssp             SCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESC-TTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTT
T ss_pred             cCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhh-hhhccCCcccchHHHHhHHhhCceEEEEecccc
Confidence            2  45666777788886  33   4689999999999999999984 66665432211110        12377899999


Q ss_pred             cc--CCCCCceEEeecCCc-chhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHH-----hcChhHHHHHHHHHHHHHHH
Q 013217          233 SL--RGPRGGMIFFKKDPV-LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH-----AQSPEFKVYQNKVVSNCRAL  304 (447)
Q Consensus       233 ~l--~Gp~gG~i~~~~~~~-~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~-----~~~~~~~~~~~~~~~~~~~l  304 (447)
                      ++  .|+|.|++++..+.. ....+...+....... .+.|..+.....+..+..     ......+.+.+++.+.++.|
T Consensus       266 ~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~-~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l  344 (420)
T 4h51_A          266 NMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREE-YTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTV  344 (420)
T ss_dssp             TSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTT-TSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCceEEEEecccCHHHHHHHHHHHHHhhhcc-cCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            75  689999998876411 0001111121111122 233444333333323221     01123456677888889999


Q ss_pred             HHHHHHCCcE----eeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCC
Q 013217          305 ASRLVELGYK----LVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFS  380 (447)
Q Consensus       305 ~~~L~~~g~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~  380 (447)
                      .+.|++.|..    .+.. ....+.++     +++.+++ ++|+++||.+    +|        + -||++..+     +
T Consensus       345 ~~~L~~~g~~~~~~~i~~-q~GmF~~~-----gls~e~v-~~L~e~~Vy~----~~--------~-gRis~Agl-----~  399 (420)
T 4h51_A          345 YDELLRLQTPGSWEHVIN-QIGMFSFL-----GLSKAQC-EYCQNHNIFI----TV--------S-GRANMAGL-----T  399 (420)
T ss_dssp             HHHHHHTTCSSCCTHHHH-CCSSEEEC-----CCCHHHH-HHHHHTTEEC----CT--------T-CEEEGGGC-----C
T ss_pred             HHHHHHhCCCCCCCeecC-CCceEEec-----CcCHHHH-HHHHhCCEEE----cC--------C-CEEEeccC-----C
Confidence            9999886532    2221 12333333     4455555 5788999986    22        1 28886543     4


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 013217          381 EKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       381 ~~di~~l~~~i~~~l~~~  398 (447)
                      ++.|++++++|+++++..
T Consensus       400 ~~ni~~~a~aI~~vvr~i  417 (420)
T 4h51_A          400 HETALMLAQTINDAVRNV  417 (420)
T ss_dssp             HHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            799999999999998754

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.81  E-value=1.8e-17  Score=166.20  Aligned_cols=320  Identities=13%  Similarity=0.042  Sum_probs=184.5

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcC---
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK---  108 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~---  108 (447)
                      .+|.|.+++...+.+. ..++ ..  .+..+...++    .++++++++...+.   .+.++||++|+..++..+..   
T Consensus        61 ~~p~v~~A~~~~~~~~-~~~~-~~--~~~~~~~~~l----a~~l~~~~~~~~~~---v~~~~sGseA~~~al~~~~~~~~  129 (448)
T 3dod_A           61 RKKELDDAIKKQLGKI-AHST-LL--GMTNVPATQL----AETLIDISPKKLTR---VFYSDSGAEAMEIALKMAFQYWK  129 (448)
T ss_dssp             SCHHHHHHHHHHHTTC-SCCC-CS--SSEEHHHHHH----HHHHHHHSCTTEEE---EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhc-cCcc-cc--ccCCHHHHHH----HHHHHHhCCCCCCE---EEEeCchHHHHHHHHHHHHHHHH
Confidence            4799999998877542 1111 11  1222333333    36788888655432   23457788999999988765   


Q ss_pred             -CC----CEEEEecCCCCcccCCCccccccccccccce----------eEEEecccCCCCCC-----------CCHHHHH
Q 013217          109 -PH----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY----------FESMPYRLDESTGL-----------VDYDMLE  162 (447)
Q Consensus       109 -pg----d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~~~~~-----------id~~~l~  162 (447)
                       +|    |+|++.++.|.|.....       +...+..          ..+..++.+ +.+.           .|+++|+
T Consensus       130 ~~G~~~~~~vi~~~~~yhg~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~le  201 (448)
T 3dod_A          130 NIGKPEKQKFIAMKNGYHGDTIGA-------VSVGSIELFHHVYGPLMFESYKAPIP-YVYRSESGDPDECRDQCLRELA  201 (448)
T ss_dssp             HTTCTTCCEEEEEC------------------------------------CEEECCC-CCTTSSSCCHHHHHHHHHHHHH
T ss_pred             hhCCCCCCEEEEECCCCCCccHHH-------HHhcCCccccccccCCCCCceEeCCC-ccccCCccchhhhhHHHHHHHH
Confidence             45    99999998875542111       1111110          011111111 1111           2589999


Q ss_pred             HHhhh--hCCcEEEEcCC--CCCC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-CCC-CC-cccEEEeCC
Q 013217          163 KTAIL--FRPKLIIAGAS--AYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-ADP-FK-YCDVVTTTT  230 (447)
Q Consensus       163 ~~~~~--~~~klii~~~~--~~~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~~~-~~-~~Di~~~s~  230 (447)
                      ++++.  .++++|++.+.  ++++ ..+    +++|+++|++||+++|+|++|. |+...+.. ... .+ ..|++++| 
T Consensus       202 ~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~-g~g~~g~~~a~~~~~~~~di~t~s-  279 (448)
T 3dod_A          202 QLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVAT-GFGRTGKMFACEHENVQPDLMAAG-  279 (448)
T ss_dssp             HHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEEC-
T ss_pred             HHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEecccc-CCCcccchhhhhhcCCCCCEEEec-
Confidence            98872  35677777754  3333 333    8999999999999999999974 43322211 100 11 25777654 


Q ss_pred             CcccC-C-CCCceEEeecCCcchhhHHHHhhhc------cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHH
Q 013217          231 HKSLR-G-PRGGMIFFKKDPVLGVELESAINNA------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCR  302 (447)
Q Consensus       231 ~K~l~-G-p~gG~i~~~~~~~~~~~~~~~i~~~------~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~  302 (447)
                       |+++ | .+.|++++++      ++.+.+...      ...+...+.+....++..++++.+..+   ++.+++.++.+
T Consensus       280 -K~l~~G~~~ig~v~~~~------~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~  349 (448)
T 3dod_A          280 -KGITGGYLPIAVTFATE------DIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESE---NIVEQVAEKSK  349 (448)
T ss_dssp             -GGGGTTSSCCEEEEEEH------HHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHH
T ss_pred             -ccccCCcCceEEEEECH------HHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhcc---cHHHHHHHHHH
Confidence             9985 4 3779999988      787777541      112222233455555555677765433   34566666677


Q ss_pred             HHHHHHHH---CC-cEeeeCCCCCeeEEecCCCCCCC----------HHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEE
Q 013217          303 ALASRLVE---LG-YKLVSGGSDNHLVLVDLRPMGID----------GARVEKILDMASITLNKNSVPGDKSALVPGGIR  368 (447)
Q Consensus       303 ~l~~~L~~---~g-~~~~~~~~~~~~~~v~~~~~~~~----------~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iR  368 (447)
                      ++++.|.+   .+ +..+.+  ...++++.+.....+          ..++.+.|.++||.+..    +      .+.+|
T Consensus       350 ~~~~~l~~l~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~----~------~~~iR  417 (448)
T 3dod_A          350 KLHFLLQDLHALPHVGDIRQ--LGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRP----L------GDVIA  417 (448)
T ss_dssp             HHHHHHHHHTTSTTEEEEEE--ETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECCE----E------TTEEE
T ss_pred             HHHHHHHHHhcCCCeEEEEe--eeEEEEEEEccCcccccccchhhHHHHHHHHHHHHCCcEEec----c------CCEEE
Confidence            77776665   22 221211  123455555331100          35677888889999843    2      25899


Q ss_pred             EecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          369 IGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       369 ig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      ++++..++    ++|++++++.|++++...
T Consensus       418 i~~~~~~t----~e~i~~~l~~l~~~l~~~  443 (448)
T 3dod_A          418 FLPPLAST----AEELSEMVAIMKQAIHEV  443 (448)
T ss_dssp             ECCCTTCC----HHHHHHHHHHHHHHHHHH
T ss_pred             EECCCCCC----HHHHHHHHHHHHHHHHHH
Confidence            99887777    999999999999998754

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.81  E-value=1.8e-17  Score=165.34  Aligned_cols=314  Identities=13%  Similarity=0.060  Sum_probs=185.4

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcC--C
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--P  109 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~--p  109 (447)
                      .+|.|.+++...+.+....+||       .+...++    +++++++++ ..+.   .+..+||++|+..++..+..  +
T Consensus        72 ~~p~v~~a~~~~~~~~~~~~~~-------~~~~~~l----~~~la~~~~-~~~~---v~~~~sGsea~~~ai~~a~~~~~  136 (434)
T 3l44_A           72 AHPHITKAITTAAENGVLYGTP-------TALEVKF----AKMLKEAMP-ALDK---VRFVNSGTEAVMTTIRVARAYTG  136 (434)
T ss_dssp             TCHHHHHHHHHHHHHCSCCSSC-------CHHHHHH----HHHHHHHCT-TCSE---EEEESSHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHhCcCCCCC-------CHHHHHH----HHHHHHhCC-CCCE---EEEeCchHHHHHHHHHHHHHhhC
Confidence            4899999998877653222222       1222233    357788886 4432   23357788999999887654  7


Q ss_pred             CCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCC-------------CCHHHHHHHhhhh--CCcEEE
Q 013217          110 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGL-------------VDYDMLEKTAILF--RPKLII  174 (447)
Q Consensus       110 gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------------id~~~l~~~~~~~--~~klii  174 (447)
                      +|+|++.++.|.+....       .+...|........+.  ..+.             .|+++|+++++++  ++++|+
T Consensus       137 ~~~vi~~~~~yhg~~~~-------~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi  207 (434)
T 3l44_A          137 RTKIMKFAGCYHGHSDL-------VLVAAGSGPSTLGTPD--SAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAIL  207 (434)
T ss_dssp             CCEEEEETTCCCCSSGG-------GGBC-------CCCBS--STTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEE
T ss_pred             CCEEEEEcCccCCCcHH-------HHhhcCCcccccCCCC--cCCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEE
Confidence            89999998877554211       1111121100000000  0011             2899999998742  567777


Q ss_pred             EcCCCCCC--CCC----hHHHHHHHHHhCCEEEEehhhhccccccccCC-C-CCC-cccEEEeCCCcccC-CCCCceEEe
Q 013217          175 AGASAYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA-D-PFK-YCDVVTTTTHKSLR-GPRGGMIFF  244 (447)
Q Consensus       175 ~~~~~~~~--~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~-~-~~~-~~Di~~~s~~K~l~-Gp~gG~i~~  244 (447)
                      ++++++++  ..+    +++|.++|++||+++|+|++| .|+ ..+... . ... ..|++++  +|+++ |+|.|++++
T Consensus       208 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~-~g~-~~g~~~~~~~~~~~~di~t~--sK~~~~G~~iG~~~~  283 (434)
T 3l44_A          208 VEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVI-TAF-RFMYGGAQDLLGVTPDLTAL--GKVIGGGLPIGAYGG  283 (434)
T ss_dssp             ECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTT-TTT-TSSSSCHHHHHTCCCSEEEE--EGGGGTTSSCEEEEE
T ss_pred             EcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccc-cce-eccccHHHHHcCCCCCeeeh--hhhhcCCcCeeeEEE
Confidence            77544433  455    899999999999999999997 454 222110 0 001 2467655  49884 566799988


Q ss_pred             ecCCcchhhHHHHhhhc--cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH----CCcEeeeC
Q 013217          245 KKDPVLGVELESAINNA--VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----LGYKLVSG  318 (447)
Q Consensus       245 ~~~~~~~~~~~~~i~~~--~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~  318 (447)
                      ++      ++.+.+...  ...+...+.+...+++..++++.+..+   ++.+++.++.+++++.|.+    .++.....
T Consensus       284 ~~------~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  354 (434)
T 3l44_A          284 KK------EIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQE---GLYEKLDELGATLEKGILEQAAKHNIDITLN  354 (434)
T ss_dssp             CH------HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTST---THHHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cH------HHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            87      777766542  112222334555556556677766543   3466677777777777765    34321111


Q ss_pred             CCCCeeEEecCCCCCC------------CHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHH
Q 013217          319 GSDNHLVLVDLRPMGI------------DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVA  386 (447)
Q Consensus       319 ~~~~~~~~v~~~~~~~------------~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~  386 (447)
                      + ...++++.+.....            ...++.+.|.++||.+...    .     ...+|++  ..++    ++|+++
T Consensus       355 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----~-----~~~~rl~--~~~t----~e~i~~  418 (434)
T 3l44_A          355 R-LKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPS----K-----YEAWFLT--TEHT----KEDIEY  418 (434)
T ss_dssp             E-ETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSS----T-----TCCEECC--TTCC----HHHHHH
T ss_pred             e-eccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEeec----C-----CCcEEEe--cccC----HHHHHH
Confidence            1 22344554432111            1255777888899998542    1     2368885  3444    999999


Q ss_pred             HHHHHHHHHHHH
Q 013217          387 IADFIHEGVEIT  398 (447)
Q Consensus       387 l~~~i~~~l~~~  398 (447)
                      ++++|++++...
T Consensus       419 ~l~~l~~~l~~~  430 (434)
T 3l44_A          419 TIEAVGRAFAAL  430 (434)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988754

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.80  E-value=5e-17  Score=161.78  Aligned_cols=308  Identities=14%  Similarity=0.048  Sum_probs=182.7

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh--cCC
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP  109 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al--~~p  109 (447)
                      .+|.|.+++...+......++       ..+...    ...++++++++ +.+.   .+.+++|++|+..++...  ...
T Consensus        69 ~~p~v~~a~~~~~~~~~~~~~-------~~~~~~----~la~~l~~~~~-~~~~---v~~~~ggsea~~~al~~a~~~~~  133 (427)
T 3fq8_A           69 AHPEVIEALKVAMEKGTSFGA-------PCALEN----VLAEMVNDAVP-SIEM---VRFVNSGTEACMAVLRIMRAYTG  133 (427)
T ss_dssp             TCHHHHHHHHHHHTTCSCCSS-------CCHHHH----HHHHHHHHHST-TCSE---EEEESSHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHhCCCcCC-------CCHHHH----HHHHHHHHhCC-CCCE---EEEeCCHHHHHHHHHHHHHHhhC
Confidence            489999999887754211111       122222    33467888887 4442   234567789999888432  234


Q ss_pred             CCEEEEecCCCCcccCCCccccccccccccceeE-----------------EEecccCCCCCCCCHHHHHHHhhhh--CC
Q 013217          110 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE-----------------SMPYRLDESTGLVDYDMLEKTAILF--RP  170 (447)
Q Consensus       110 gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-----------------~~~~~~~~~~~~id~~~l~~~~~~~--~~  170 (447)
                      +++|++.++.|.|.....       ....+....                 ++.++.      -|+++|+++++++  ++
T Consensus       134 ~~~vi~~~~~yhg~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~le~~l~~~~~~~  200 (427)
T 3fq8_A          134 RDKIIKFEGCYHGHADMF-------LVKAGSGVATLGLPSSPGVPKKTTANTLTTPY------NDLEAVKALFAENPGEI  200 (427)
T ss_dssp             CCEEEEEETCCCCSCGGG-------CSSCCTHHHHHTCCSCSSSCHHHHTTEEEEET------TCHHHHHHHHHHSTTTE
T ss_pred             CCEEEEECCCcCCCCHHH-------HHhcCCcccccCCCCCCCCCCcccCceeecCC------CCHHHHHHHHHhCCCCE
Confidence            578998888765542111       011111000                 111111      1899999999764  56


Q ss_pred             cEEEEcCCCCC-C-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccCC--CCCC-cccEEEeCCCcccC-CCCCc
Q 013217          171 KLIIAGASAYP-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPRGG  240 (447)
Q Consensus       171 klii~~~~~~~-~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~--~~~~-~~Di~~~s~~K~l~-Gp~gG  240 (447)
                      ++|++++++++ + ..+    +++|.++|++||+++|+|++|. |+ ..+...  .... ..|++++|  |+++ |.|.|
T Consensus       201 ~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-g~-~~g~~~~~~~~~~~~di~t~s--K~~~~G~~~G  276 (427)
T 3fq8_A          201 AGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVIT-GF-RIAYGGVQEKFGVTPDLTTLG--KIIGGGLPVG  276 (427)
T ss_dssp             EEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-BT-TTBTTHHHHHTTCCCSEEEEC--GGGGTTSSCE
T ss_pred             EEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-cc-ccCcchhhHhcCCCCChhhhh--hhhhCCcceE
Confidence            78888754433 3 556    8999999999999999999984 55 322110  0011 24776555  9985 56789


Q ss_pred             eEEeecCCcchhhHHHHhhhcc--CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH----CCcE
Q 013217          241 MIFFKKDPVLGVELESAINNAV--FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----LGYK  314 (447)
Q Consensus       241 ~i~~~~~~~~~~~~~~~i~~~~--~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~  314 (447)
                      ++++++      ++.+.+....  ..+...+.+...+++..++++.+..++   +.+++.++.+++.+.|.+    .++.
T Consensus       277 ~~~~~~------~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~  347 (427)
T 3fq8_A          277 AYGGKR------EIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPG---TYEYLDQITKRLSDGLLAIAQETGHA  347 (427)
T ss_dssp             EEEECH------HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTT---HHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             EEEEcH------HHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            998887      7777665421  111112335566666666777665433   456677777777777765    2332


Q ss_pred             eeeCCCCCeeEEecCCCCCCC------------HHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHH
Q 013217          315 LVSGGSDNHLVLVDLRPMGID------------GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEK  382 (447)
Q Consensus       315 ~~~~~~~~~~~~v~~~~~~~~------------~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~  382 (447)
                      ....+ ...+.++.+......            ..++.+.|.++||.+...    .     ..++|  .+..++    ++
T Consensus       348 ~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~----~-----~~r~~--~~~~~t----~e  411 (427)
T 3fq8_A          348 ACGGQ-VSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPS----Q-----FEAGF--TSLAHT----EE  411 (427)
T ss_dssp             CEEEE-ETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSS----T-----TSCEE--CCTTCC----HH
T ss_pred             eEEEE-eeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEEecC----C-----CCCEE--eeCcCC----HH
Confidence            22111 133455555432221            346777888899998542    1     12344  444555    99


Q ss_pred             HHHHHHHHHHHHHH
Q 013217          383 EFVAIADFIHEGVE  396 (447)
Q Consensus       383 di~~l~~~i~~~l~  396 (447)
                      |++++++.|+++++
T Consensus       412 ~i~~~l~~l~~~l~  425 (427)
T 3fq8_A          412 DIDATLAAARTVMS  425 (427)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998875

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.80  E-value=2.3e-17  Score=165.89  Aligned_cols=327  Identities=12%  Similarity=0.036  Sum_probs=189.3

Q ss_pred             CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcC----
Q 013217           33 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK----  108 (447)
Q Consensus        33 ~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~----  108 (447)
                      +|.|.+++.+.+.+. ..+++..++  ..+...    ..+++++++++.+.+.+   +..+||++|+..++..+.+    
T Consensus        68 ~p~v~~A~~~~~~~~-~~~~~~~~~--~~~~~~----~la~~l~~~~~~~~~~v---~~~~ggseA~~~al~~~~~~~~~  137 (459)
T 4a6r_A           68 RKDFAEAARRQMEEL-PFYNTFFKT--THPAVV----ELSSLLAEVTPAGFDRV---FYTNSGSESVDTMIRMVRRYWDV  137 (459)
T ss_dssp             CHHHHHHHHHHHHHC-SCCCTTSSS--CCHHHH----HHHHHHHHHSCTTCCEE---EEESSHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhc-ccccccccc--CCHHHH----HHHHHHHHhCCCCCCEE---EEeCchHHHHHHHHHHHHHHHHh
Confidence            799999998877642 112222211  122222    33468888887765532   3346778999999988865    


Q ss_pred             ----CCCEEEEecCCCCcccCC-----CccccccccccccceeEEEeccc--CCCCCCCC--------HHHHHHHhhh--
Q 013217          109 ----PHDRIMGLDLPHGGHLSH-----GFMTPKRRVSGTSIYFESMPYRL--DESTGLVD--------YDMLEKTAIL--  167 (447)
Q Consensus       109 ----pgd~Vl~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~id--------~~~l~~~~~~--  167 (447)
                          ++|+|++.++.|.|....     +..............+..++++.  ....+ .|        +++|++++.+  
T Consensus       138 ~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~  216 (459)
T 4a6r_A          138 QGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIG  216 (459)
T ss_dssp             TTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcC
Confidence                579999999887654210     00000000000111123333222  00112 45        7889988864  


Q ss_pred             -hCCcEEEEcCCCCC-C-CCC----hHHHHHHHHHhCCEEEEehhhhcccccccc-CCCC-CC-cccEEEeCCCcccCC-
Q 013217          168 -FRPKLIIAGASAYP-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASV-VADP-FK-YCDVVTTTTHKSLRG-  236 (447)
Q Consensus       168 -~~~klii~~~~~~~-~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~~~-~~-~~Di~~~s~~K~l~G-  236 (447)
                       .++++|++.+.+++ + ..+    +++|+++|++||+++|+|++|. |+...+. .... .+ ..|++++|  |+|+| 
T Consensus       217 ~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~gr~G~~~~~~~~~~~pdi~t~s--K~l~gg  293 (459)
T 4a6r_A          217 ADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVIC-GFGRTGEWFGHQHFGFQPDLFTAA--KGLSSG  293 (459)
T ss_dssp             GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSHHHHHTCCCSEEEEC--GGGGTT
T ss_pred             CCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcccccchHhhcCCCCCeeehh--hhhcCC
Confidence             35677777654333 3 444    8999999999999999999974 4432221 1000 01 25777665  99865 


Q ss_pred             -CCCceEEeecCCcchhhHHHHhhhc--cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHH-HHHHHHHHHH-HH-
Q 013217          237 -PRGGMIFFKKDPVLGVELESAINNA--VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVV-SNCRALASRL-VE-  310 (447)
Q Consensus       237 -p~gG~i~~~~~~~~~~~~~~~i~~~--~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~-~~~~~l~~~L-~~-  310 (447)
                       .+.|++++++      ++.+.+...  ...+...+.+....++..++++.+..++   +.+++. ++.+++++.| +. 
T Consensus       294 ~~~lg~v~~~~------~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~~~~~~l~~~l  364 (459)
T 4a6r_A          294 YLPIGAVFVGK------RVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEG---IVQRVKDDIGPYMQKRWRETF  364 (459)
T ss_dssp             SSCCEEEEECH------HHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHHTC---HHHHHHHTHHHHHHHHHHHHH
T ss_pred             CCCccceeeCH------HHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHH
Confidence             6779999987      777766521  0111111224444455455677554333   345555 5666666666 33 


Q ss_pred             --C-CcEeeeCCCCCeeEEecCCCCCC----------CHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccC
Q 013217          311 --L-GYKLVSGGSDNHLVLVDLRPMGI----------DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTR  377 (447)
Q Consensus       311 --~-g~~~~~~~~~~~~~~v~~~~~~~----------~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~  377 (447)
                        . .+..+.+ . ..++++++.....          ...++.+.|.++||.+...          .+.+|++++..++ 
T Consensus       365 ~~~~~~~~~~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----------g~~iRi~~~~~~t-  431 (459)
T 4a6r_A          365 SRFEHVDDVRG-V-GMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRAC----------GDHIVSAPPLVMT-  431 (459)
T ss_dssp             TTCTTEEEEEE-E-TTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEE----------TTEEEECCCTTCC-
T ss_pred             hcCCCeEEEEE-E-EEEEEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecC----------CCEEEEECCCCCC-
Confidence              2 2322222 1 2233444432110          1456778888899998642          1589999887777 


Q ss_pred             CCCHHHHHHHHHHHHHHHHHH
Q 013217          378 GFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       378 g~~~~di~~l~~~i~~~l~~~  398 (447)
                         ++|++++++.|++++...
T Consensus       432 ---~e~i~~~l~~l~~~l~~~  449 (459)
T 4a6r_A          432 ---RAEVDEMLAVAERCLEEF  449 (459)
T ss_dssp             ---HHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHH
Confidence               999999999999998754

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.80  E-value=2.1e-17  Score=166.43  Aligned_cols=321  Identities=14%  Similarity=0.042  Sum_probs=192.8

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcC---
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK---  108 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~---  108 (447)
                      .+|.|.+|+.+.+.+. ...+...++  ..+...++    .++++++++.+.+.   .+..+||++|+..++..+..   
T Consensus        72 ~~p~v~~A~~~~~~~~-~~~~~~~~~--~~~~~~~l----ae~l~~~~~~~~~~---v~~~~sGseA~~~aik~a~~~~~  141 (472)
T 3hmu_A           72 GRDELAEVAARQMREL-PYYNTFFKT--THVPAIAL----AQKLAELAPGDLNH---VFFAGGGSEANDTNIRMVRTYWQ  141 (472)
T ss_dssp             CCHHHHHHHHHHHHHC-SCCCSSSSE--ECHHHHHH----HHHHHHHSCTTEEE---EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhc-ccccccccc--CCHHHHHH----HHHHHHhCCCCCCE---EEEeCCHHHHHHHHHHHHHHHHH
Confidence            3799999998877642 112222221  12222333    36788888765432   23357788999999988764   


Q ss_pred             -----CCCEEEEecCCCCcccCCCccccccccccccc-----------eeEEEeccc--CCCCCCCC--------HHHHH
Q 013217          109 -----PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-----------YFESMPYRL--DESTGLVD--------YDMLE  162 (447)
Q Consensus       109 -----pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~-----------~~~~~~~~~--~~~~~~id--------~~~l~  162 (447)
                           ++++|++.++.|.|... +      .....+.           .+..++++.  ....+ .|        +++|+
T Consensus       142 ~~g~~~~~~ii~~~~~yHg~t~-~------~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le  213 (472)
T 3hmu_A          142 NKGQPEKTVIISRKNAYHGSTV-A------SSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARARELE  213 (472)
T ss_dssp             HTTCTTCCEEEEETTCCCCSSH-H------HHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHH
T ss_pred             hcCCCCCCEEEEEcCcCCCccH-H------hhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHH
Confidence                 56899999887655321 0      0011110           123333221  10111 34        78888


Q ss_pred             HHhhh---hCCcEEEEcCCCCCC--CCC----hHHHHHHHHHhCCEEEEehhhhcccccccc-CCC-CCC-cccEEEeCC
Q 013217          163 KTAIL---FRPKLIIAGASAYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASV-VAD-PFK-YCDVVTTTT  230 (447)
Q Consensus       163 ~~~~~---~~~klii~~~~~~~~--~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~~-~~~-~~Di~~~s~  230 (447)
                      +++++   .++++|++.+.++++  ..+    +++|+++|+++|+++|+|++| .|+...+. ... ..+ ..|++++| 
T Consensus       214 ~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~-~gfgr~G~~~a~~~~~v~pdi~t~s-  291 (472)
T 3hmu_A          214 EAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVI-CGFGRTGNWFGTQTMGIRPHIMTIA-  291 (472)
T ss_dssp             HHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTT-TTTTTTSSSCHHHHHTCCCSEEEEC-
T ss_pred             HHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccc-cCCcccCccchhHHhCCCCceeeec-
Confidence            88863   256778887544333  444    899999999999999999997 44432221 000 001 25788765 


Q ss_pred             CcccCC--CCCceEEeecCCcchhhHHHHhhhcc-CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHH-HHHHHHHH
Q 013217          231 HKSLRG--PRGGMIFFKKDPVLGVELESAINNAV-FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVV-SNCRALAS  306 (447)
Q Consensus       231 ~K~l~G--p~gG~i~~~~~~~~~~~~~~~i~~~~-~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~-~~~~~l~~  306 (447)
                       |+|+|  ++.|++++++      ++.+.+.... ..+...+.+....++..++++.+..+   ++.+++. ++.+++++
T Consensus       292 -K~l~gg~~plG~v~~~~------~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~---~~~~~~~~~~~~~l~~  361 (472)
T 3hmu_A          292 -KGLSSGYAPIGGSIVCD------EVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEEE---NILDHVRNVAAPYLKE  361 (472)
T ss_dssp             -GGGTTTSSCCEEEEEEH------HHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHHHT---THHHHHHHTHHHHHHH
T ss_pred             -hhhhcCCcceEEEEECH------HHHHhcccCCccccCCCCCCHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHH
Confidence             99865  6779999988      7877774221 12222233445555555577765433   3466677 77788888


Q ss_pred             HHHHC----CcEeeeCCCCCeeEEecCCCCCC-----------CHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEec
Q 013217          307 RLVEL----GYKLVSGGSDNHLVLVDLRPMGI-----------DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS  371 (447)
Q Consensus       307 ~L~~~----g~~~~~~~~~~~~~~v~~~~~~~-----------~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~  371 (447)
                      .|++.    ++..+.+ . ..++.+++.....           ....+.+.|.++||.+...          .+.||+++
T Consensus       362 ~L~~l~~~~~v~~vr~-~-G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----------g~~iRi~p  429 (472)
T 3hmu_A          362 KWEALTDHPLVGEAKI-V-GMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHV----------GDRMIISP  429 (472)
T ss_dssp             HHHGGGGSTTEEEEEE-E-TTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEE----------TTEEEECC
T ss_pred             HHHHHhcCCCeEEEEe-c-CceEEEEEecCccccccccchhHHHHHHHHHHHHHCCcEEEec----------CCEEEEEC
Confidence            88652    2222221 1 2234444432100           1456778888899988542          15899998


Q ss_pred             CccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          372 PAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       372 ~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      +...+    ++|+++++++|++++...
T Consensus       430 ~~~~t----~e~i~~~l~~l~~~l~~~  452 (472)
T 3hmu_A          430 PLVIT----PAEIDEMFVRIRKSLDEA  452 (472)
T ss_dssp             CTTCC----HHHHHHHHHHHHHHHHHH
T ss_pred             CCCCC----HHHHHHHHHHHHHHHHHH
Confidence            88777    999999999999998765

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.80  E-value=7.6e-18  Score=168.87  Aligned_cols=316  Identities=12%  Similarity=0.065  Sum_probs=189.5

Q ss_pred             CCHHHH-H-HHhh---hhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC-CCCCccceeeecCCcHHHHHHHHHH
Q 013217           32 TSRAVM-E-AVGS---CLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN-LDENKWGVNVQPLSGSPANFEVYTA  105 (447)
Q Consensus        32 ~~~~v~-~-a~~~---~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g-~~~~~~~~~v~~~sGs~a~~~~~~a  105 (447)
                      .+|.|. + ++..   .+... . .+. .+|  ..+...++    .++++++++ .+.+.   .+.++||++|+..++..
T Consensus        71 ~~p~v~~~~A~~~~~~~~~~~-~-~~~-~~~--~~~~~~~l----a~~la~~~~~~~~~~---v~~~~~gseA~~~aik~  138 (449)
T 2cjg_A           71 NPPALVDDREFHAELMQAALN-K-PSN-SDV--YSVAMARF----VETFARVLGDPALPH---LFFVEGGALAVENALKA  138 (449)
T ss_dssp             SCHHHHTCHHHHHHHHHHHTC-C-CCT-TTC--CCHHHHHH----HHHHHHHHCCTTCCE---EEEESSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhc-C-CCC-ccc--CCHHHHHH----HHHHHHhcCCCCCCE---EEEeCchHHHHHHHHHH
Confidence            479999 8 8887   55432 1 111 112  12222333    356888886 33432   23346778999988865


Q ss_pred             hc---C----------C-CCEEEEecCCCCcccCCCccccccccccccc------ee-----EEEecccCCC-CC-----
Q 013217          106 IL---K----------P-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------YF-----ESMPYRLDES-TG-----  154 (447)
Q Consensus       106 l~---~----------p-gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~------~~-----~~~~~~~~~~-~~-----  154 (447)
                      +.   +          | ||+|+++++.|.|.....       +...+.      .+     .++.++.+.. ..     
T Consensus       139 a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  211 (449)
T 2cjg_A          139 AFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYT-------LSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMA  211 (449)
T ss_dssp             HHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTG-------GGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHH
T ss_pred             HHHHhcccccccccccCCCCEEEEECCCcCCcccch-------hhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccc
Confidence            42   2          2 899999998876643211       111110      01     2333333310 11     


Q ss_pred             ---CCCHHHHHHHhhh--hCCcEEEEcCCCCC-C-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC
Q 013217          155 ---LVDYDMLEKTAIL--FRPKLIIAGASAYP-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK  221 (447)
Q Consensus       155 ---~id~~~l~~~~~~--~~~klii~~~~~~~-~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~  221 (447)
                         ..|+++|++++++  .++++|++++.+++ + ..+    +++|+++|++||+++|+|++|. |+...+.. . ...+
T Consensus       212 ~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~-g~g~~g~~~~~~~~~  290 (449)
T 2cjg_A          212 ALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQT-GCGLTGTAWAYQQLD  290 (449)
T ss_dssp             HHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSTHHHHT
T ss_pred             hhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEecccc-CCCccCcceeecccC
Confidence               2567779988863  36788888765443 4 456    8999999999999999999985 44332221 0 0001


Q ss_pred             -cccEEEeCCCcccCCCCCceEEeecCCcchhhHHHHhhh----ccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHH
Q 013217          222 -YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINN----AVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK  296 (447)
Q Consensus       222 -~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~----~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~  296 (447)
                       ..|++++  +|+|   +.|++++++      ++.+.+..    ....+...+.+....++..++++.+.++   ++.++
T Consensus       291 ~~~di~t~--sK~l---~iG~~~~~~------~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~~~~~---~~~~~  356 (449)
T 2cjg_A          291 VAPDIVAF--GKKT---QVCGVMAGR------RVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEAE---GLFER  356 (449)
T ss_dssp             CCCSEEEE--CGGG---SSEEEEECG------GGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHHHHHH---THHHH
T ss_pred             CCceEEEe--cCcc---cEEEEEECH------HHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHHHHHhc---cHHHH
Confidence             2577755  4998   578888877      56554221    0111112233555555555677765432   34677


Q ss_pred             HHHHHHHHHHHHHHC-----C-cEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEe
Q 013217          297 VVSNCRALASRLVEL-----G-YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIG  370 (447)
Q Consensus       297 ~~~~~~~l~~~L~~~-----g-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig  370 (447)
                      +.++.+++.+.|++.     + +..+.+  ...++++++... .+..++.+.|.++||.+...         ..+.+|++
T Consensus       357 ~~~~~~~l~~~L~~l~~~~~~~~~~~~~--~g~~~~~~~~~~-~~~~~~~~~l~~~Gv~v~~~---------g~~~iRi~  424 (449)
T 2cjg_A          357 AVQHGKYLRARLDELAADFPAVVLDPRG--RGLMCAFSLPTT-ADRDELIRQLWQRAVIVLPA---------GADTVRFR  424 (449)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTTSEEEEE--ETTEEEEECSSH-HHHHHHHHHHHHTTEECEEE---------TTTEEEEC
T ss_pred             HHHHHHHHHHHHHHHHhhCCCceeeEee--ccEEEEEEECCh-HHHHHHHHHHHHCCeEEecC---------CCCEEEEE
Confidence            788888888888752     2 333322  233455676431 13456777787899998642         13589999


Q ss_pred             cCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          371 SPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       371 ~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      ++..++    ++|++++++.|++++..
T Consensus       425 ~~~~~t----~e~i~~~l~~l~~~l~~  447 (449)
T 2cjg_A          425 PPLTVS----TAEIDAAIAAVRSALPV  447 (449)
T ss_dssp             CCTTCC----HHHHHHHHHHHHHHHHH
T ss_pred             CCCCCC----HHHHHHHHHHHHHHHHH
Confidence            887777    99999999999988763

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.79  E-value=7.4e-18  Score=168.22  Aligned_cols=316  Identities=14%  Similarity=0.083  Sum_probs=186.1

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh--cCC
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP  109 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al--~~p  109 (447)
                      .+|.|.+++.+.+.+....+|       ..+...+    .+++++++++ ..+.   .+.++||++|+.+++.+.  +.+
T Consensus        73 ~~~~v~~a~~~~~~~~~~~~~-------~~~~~~~----l~~~la~~~~-~~~~---v~~~~sgseA~~~al~~ar~~~~  137 (434)
T 2epj_A           73 KHPRVLEAVEEALARGWLYGA-------PGEAEVL----LAEKILGYVK-RGGM---IRFVNSGTEATMTAIRLARGYTG  137 (434)
T ss_dssp             TCHHHHHHHHHHHHTCSCCSS-------CCHHHHH----HHHHHHHHHC-TTCE---EEEESSHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHhCCCCCC-------CCHHHHH----HHHHHHHhCC-CCCE---EEEeCCHHHHHHHHHHHHHHhhC
Confidence            579999999888765211111       1222233    3467788884 2332   234577889999988862  345


Q ss_pred             CCEEEEecCCCCcccCCCccccccc------cccccce----eEEEecccCCCCCCCCHHHHHHHhhh--hCCcEEEEcC
Q 013217          110 HDRIMGLDLPHGGHLSHGFMTPKRR------VSGTSIY----FESMPYRLDESTGLVDYDMLEKTAIL--FRPKLIIAGA  177 (447)
Q Consensus       110 gd~Vl~~~~~~~~~~~~~~~~~~~~------~~~~g~~----~~~~~~~~~~~~~~id~~~l~~~~~~--~~~klii~~~  177 (447)
                      +|+|++.++.|.+............      ....|..    ..++.++.      .|+++|++++++  .++++|++++
T Consensus       138 ~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~------~d~~~le~~l~~~~~~~~~vi~ep  211 (434)
T 2epj_A          138 RDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY------NDVEALERVFAEYGDRIAGVIVEP  211 (434)
T ss_dssp             CCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET------TCHHHHHHHHHHHGGGEEEEEECS
T ss_pred             CCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC------CCHHHHHHHHHhCCCCEEEEEEeC
Confidence            6788888877655421110000000      0001110    01222221      489999999875  2677888875


Q ss_pred             CCC-CC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccCC-CCCceEEeecC
Q 013217          178 SAY-PR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRG-PRGGMIFFKKD  247 (447)
Q Consensus       178 ~~~-~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~G-p~gG~i~~~~~  247 (447)
                      .++ ++ ..+    +++|.++|++||+++|+|++|. |+ ..+.. . ..++ ..|++  |++|++++ .++|++++++ 
T Consensus       212 ~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~-~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~v~~~~-  286 (434)
T 2epj_A          212 VIANAGVIPPRREFLAALQRLSRESGALLILDEVVT-GF-RLGLEGAQGYFNIEGDII--VLGKIIGGGFPVGAVAGSR-  286 (434)
T ss_dssp             SBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTT-TT-TSSTTHHHHHHTCCCSEE--EEEGGGGTTSSCEEEEECH-
T ss_pred             CcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchh-ce-eCCcchhhHHhCCCCCee--eecchhcCCcceeeeeecH-
Confidence            433 34 567    9999999999999999999986 65 22210 0 0001 25776  45599854 5789999987 


Q ss_pred             CcchhhHHHHhhhcc--CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC----CcEeeeCCCC
Q 013217          248 PVLGVELESAINNAV--FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL----GYKLVSGGSD  321 (447)
Q Consensus       248 ~~~~~~~~~~i~~~~--~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~  321 (447)
                           ++.+.+....  ..+...+.+...+++..++++.+.++   ++.+++.++.+++.+.|++.    ++.....+ .
T Consensus       287 -----~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~  357 (434)
T 2epj_A          287 -----EVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEE---PVYSVSREAAKALEEAASEVLDRTGLPYTINR-V  357 (434)
T ss_dssp             -----HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEE-E
T ss_pred             -----HHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEE-e
Confidence                 6777665411  11111134555555656677765432   34677778888888888663    55321111 2


Q ss_pred             CeeEEecCCCCC------------CCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHH
Q 013217          322 NHLVLVDLRPMG------------IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIAD  389 (447)
Q Consensus       322 ~~~~~v~~~~~~------------~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~  389 (447)
                      ..++++.+....            ....++.+.|.++||.+..+    .     ..++|++  ..++    ++|++++++
T Consensus       358 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----~-----~~~~~~~--~~~t----~e~i~~~l~  422 (434)
T 2epj_A          358 ESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPS----N-----LEAVFTG--LPHQ----GEALEIAVE  422 (434)
T ss_dssp             TTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSS----T-----TSCEECC--TTCS----HHHHHHHHH
T ss_pred             eeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEecc----C-----CCcEEEe--ccCC----HHHHHHHHH
Confidence            345666664311            12456778888899998542    1     1246654  3444    999999999


Q ss_pred             HHHHHHHH
Q 013217          390 FIHEGVEI  397 (447)
Q Consensus       390 ~i~~~l~~  397 (447)
                      .|++++..
T Consensus       423 ~l~~~l~~  430 (434)
T 2epj_A          423 GLRSSLKT  430 (434)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.78  E-value=1.3e-18  Score=171.21  Aligned_cols=278  Identities=13%  Similarity=0.059  Sum_probs=173.1

Q ss_pred             HHHHHHHHHHHHHHcCCC--CCccceeeecCCcH-HHHHHHHHHhcCCCC----EEEEecCCCCcccCCCcccccccccc
Q 013217           65 DELETLCQKRALAAFNLD--ENKWGVNVQPLSGS-PANFEVYTAILKPHD----RIMGLDLPHGGHLSHGFMTPKRRVSG  137 (447)
Q Consensus        65 ~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sGs-~a~~~~~~al~~pgd----~Vl~~~~~~~~~~~~~~~~~~~~~~~  137 (447)
                      .++++.+.+++. ..|.+  +++   +|.+|+|+ +++..++.++++|||    +|++.+|.|.++..        .+..
T Consensus        71 ~~lr~aia~~~~-~~g~~~~~~~---~i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~--------~~~~  138 (391)
T 3bwn_A           71 PELEDAIKDLHG-VVGNAATEDR---YIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVE--------ETTY  138 (391)
T ss_dssp             HHHHHHHHHHHH-HHCSBCCSSS---EEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHH--------HHHT
T ss_pred             HHHHHHHHHHHH-hcCCCCCCCC---eEEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHH--------HHHH
Confidence            455544444444 33443  321   34558887 899999999999999    99999998876532        2334


Q ss_pred             ccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhcccccccc
Q 013217          138 TSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASV  215 (447)
Q Consensus       138 ~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~  215 (447)
                      .|.  +++.+++|.++  ++        .+ ++|+|++++++||+  ..+  +|++.++.+++++|+|++|+.+.     
T Consensus       139 ~g~--~~~~~~~d~~~--l~--------~~-~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~De~y~~~~-----  198 (391)
T 3bwn_A          139 VRS--GMYKWEGDAWG--FD--------KK-GPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHDFAYYWPH-----  198 (391)
T ss_dssp             TCB--TTEEEEEESTT--CC--------CC-SCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEECTTCSTT-----
T ss_pred             cCC--eEEEecCCHHH--cC--------CC-CCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEeCCCCCCC-----
Confidence            454  33444454322  22        13 78999888888886  433  44332222239999999986321     


Q ss_pred             CCCCC---CcccEEEeCCCccc--CCCCCceEEe-ecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc---
Q 013217          216 VADPF---KYCDVVTTTTHKSL--RGPRGGMIFF-KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ---  286 (447)
Q Consensus       216 ~~~~~---~~~Di~~~s~~K~l--~Gp~gG~i~~-~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~---  286 (447)
                       ..++   ...+++++|+||++  +|.|.|++++ ++      ++.+.+........ .+++.....++..+++...   
T Consensus       199 -~~~l~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~------~l~~~l~~~~~~~~-~~~~~~~q~a~~~~l~~~~~~~  270 (391)
T 3bwn_A          199 -YTPITRRQDHDIMLFTFSKITGHAGSRIGWALVKDK------EVAKKMVEYIIVNS-IGVSKESQVRTAKILNVLKETC  270 (391)
T ss_dssp             -TSCCCCCBCCSEEEEEHHHHHSCGGGCEEEEEECCH------HHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHT
T ss_pred             -CCccccCCCCeEEEEechhhcCCCccceEEEEecCH------HHHHHHHHHhcccc-cCCCHHHHHHHHHHHhCcchhc
Confidence             1122   24679999999986  4777899997 55      66666654322111 2334444444555666432   


Q ss_pred             ------ChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeC-CC-----------CCeeEEecCCCCCCCHHHHHHHHhhcC
Q 013217          287 ------SPEFKVYQNKVVSNCRALASRLVEL-GYKLVSG-GS-----------DNHLVLVDLRPMGIDGARVEKILDMAS  347 (447)
Q Consensus       287 ------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~-----------~~~~~~v~~~~~~~~~~~~~~~L~~~g  347 (447)
                            ....++..+.+.++++.+.+.|++. |+++..+ ++           ...++|+++..    .+.+.+.|+++|
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~----~~~~~~~l~~~g  346 (391)
T 3bwn_A          271 KSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKE----ETDLVSELRRHK  346 (391)
T ss_dssp             TCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESS----SCCHHHHHHHTT
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCc----HHHHHHHHHHCC
Confidence                  3345777888889999999999885 6665431 11           11256777653    245778888999


Q ss_pred             eEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          348 ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       348 I~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      |.+..+...+.    ..+++|+++..  +    +++++++++.|.++++
T Consensus       347 V~v~pg~~fg~----~~~~iRis~~~--~----~e~i~~~~~~L~~~~~  385 (391)
T 3bwn_A          347 VMSRAGERCGS----DKKHVRVSMLS--R----EDVFNVFLERLANMKL  385 (391)
T ss_dssp             EECEEGGGGTC----CTTEEEEESCS--C----HHHHHHHHHHHHSCC-
T ss_pred             EEEccCCCCCC----CCCEEEEEecC--C----HHHHHHHHHHHHHHHH
Confidence            99976533321    24689999762  4    8899999998877654

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.78  E-value=6.5e-17  Score=161.11  Aligned_cols=311  Identities=14%  Similarity=0.079  Sum_probs=184.2

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcC--C
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--P  109 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~--p  109 (447)
                      .+|.|.+++...+.+....+||       .+...++    +++++++++ ..+.   .+.++||++|+..++..+..  +
T Consensus        70 ~~p~v~~A~~~~~~~~~~~~~~-------~~~~~~l----~~~la~~~~-~~~~---v~~~~~Gsea~~~ai~~a~~~~~  134 (429)
T 3k28_A           70 ANDRVVEALKAVAERGTSFGAP-------TEIENKL----AKLVIERVP-SIEI---VRMVNSGTEATMSALRLARGYTG  134 (429)
T ss_dssp             SCHHHHHHHHHHHHHCSCCSSC-------CHHHHHH----HHHHHHHST-TCSE---EEEESSHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHhhCcCcCCC-------CHHHHHH----HHHHHHhCC-CCCE---EEEeCChHHHHHHHHHHHHHhhC
Confidence            4899999998877653211222       2222333    357777875 3332   23457788999998877653  6


Q ss_pred             CCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCC-------------CCHHHHHHHhhhh--CCcEEE
Q 013217          110 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGL-------------VDYDMLEKTAILF--RPKLII  174 (447)
Q Consensus       110 gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------------id~~~l~~~~~~~--~~klii  174 (447)
                      +++|++.++.|.|.....       +...|.......++.  ..+.             -|+++++++++++  ++++|+
T Consensus       135 ~~~vi~~~~~yhg~~~~~-------~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi  205 (429)
T 3k28_A          135 RNKILKFIGCYHGHGDSL-------LIKAGSGVATLGLPD--SPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVI  205 (429)
T ss_dssp             CCEEEEEETCCCCSCGGG-------CSSCCTTC-----CC--CTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEE
T ss_pred             CCEEEEECCCcCCCcHHH-------HHhcCCcccccCCCC--cCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEE
Confidence            789999888765442111       111111111111110  0011             1899999988742  567777


Q ss_pred             EcCCCCC-C-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccCC-C-CCC-cccEEEeCCCcccC-CCCCceEEe
Q 013217          175 AGASAYP-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA-D-PFK-YCDVVTTTTHKSLR-GPRGGMIFF  244 (447)
Q Consensus       175 ~~~~~~~-~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~-~-~~~-~~Di~~~s~~K~l~-Gp~gG~i~~  244 (447)
                      +.++++. + ..+    +++|.++|++||+++|+|++| .|+ ..+... . ..+ ..|++++  +|+++ |++.|++++
T Consensus       206 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~-~g~-~~g~~~~~~~~~~~~di~t~--sK~~~~G~~iG~~~~  281 (429)
T 3k28_A          206 VEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVM-TGF-RVAYNCGQGYYGVTPDLTCL--GKVIGGGLPVGAYGG  281 (429)
T ss_dssp             ECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTT-TTT-TSSTTHHHHHHTCCCSEEEE--CGGGGTTSCCEEEEE
T ss_pred             EcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccc-ccc-ccCcchHHHHhCCCCceehh--hhhhcCCCCeEEEEE
Confidence            7754433 3 555    899999999999999999998 555 332110 0 001 2467654  59984 567799999


Q ss_pred             ecCCcchhhHHHHhhhcc--CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC----Cc-Eeee
Q 013217          245 KKDPVLGVELESAINNAV--FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL----GY-KLVS  317 (447)
Q Consensus       245 ~~~~~~~~~~~~~i~~~~--~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~-~~~~  317 (447)
                      ++      ++.+.+....  ..+...+.+...+++..++++...    ++..+++.++.+++.+.|.+.    ++ ..+.
T Consensus       282 ~~------~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  351 (429)
T 3k28_A          282 KA------EIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT----PESYVEFERKAEMLEAGLRKAAEKHGIPHHIN  351 (429)
T ss_dssp             CH------HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC----HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred             cH------HHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence            87      7777665421  122223345555555555676543    456778888888888888662    22 1121


Q ss_pred             CCCCCeeEEecCCCCCC------------CHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHH
Q 013217          318 GGSDNHLVLVDLRPMGI------------DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFV  385 (447)
Q Consensus       318 ~~~~~~~~~v~~~~~~~------------~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~  385 (447)
                      + . ..++++.+.....            ...++.+.|.++||.+..+    .     .+.+|++  ..++    ++|++
T Consensus       352 ~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----~-----~~~~r~~--~~~t----~e~i~  414 (429)
T 3k28_A          352 R-A-GSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPS----Q-----FEGLFLS--TVHS----DADIE  414 (429)
T ss_dssp             E-E-TTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSS----T-----TSCBCCC--TTCC----HHHHH
T ss_pred             e-e-ccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCCeEEecC----C-----CCCEEEE--CCCC----HHHHH
Confidence            1 1 2233444422111            1356777888899998532    1     2367874  2444    99999


Q ss_pred             HHHHHHHHHHHH
Q 013217          386 AIADFIHEGVEI  397 (447)
Q Consensus       386 ~l~~~i~~~l~~  397 (447)
                      ++.+.|++++..
T Consensus       415 ~~l~~l~~~l~~  426 (429)
T 3k28_A          415 ATIAAAEIAMSK  426 (429)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH
Confidence            999999988763

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.77  E-value=1.9e-16  Score=158.77  Aligned_cols=328  Identities=13%  Similarity=0.030  Sum_probs=186.1

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC-CCccceeeecCCcHHHHHHHHHHhc--C
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVYTAIL--K  108 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~-~~~~~~~v~~~sGs~a~~~~~~al~--~  108 (447)
                      .+|.|.+++.+.+...  ..+....+  ..+...    ..+++++++++.+ .+.   .+.++||++|+..++....  .
T Consensus        81 ~~p~v~~A~~~~~~~~--~~~~~~~~--~~~~~~----~la~~l~~~~~~~~~~~---v~~~~sGseA~~~alk~a~~~~  149 (453)
T 4ffc_A           81 SHPAVAAAIADQATHF--THTCFMVT--PYEQYV----QVAELLNALTPGDHDKR---TALFNSGAEAVENAIKVARLAT  149 (453)
T ss_dssp             TCHHHHHHHHHHHHHC--SCCTTTTS--CCHHHH----HHHHHHHHHSSCSSCEE---EEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhc--cccccCcC--CCHHHH----HHHHHHHHhCCCCCCcE---EEEeCcHHHHHHHHHHHHHHhc
Confidence            3899999998877542  11221111  122222    3346788888754 232   2345778899999987654  3


Q ss_pred             CCCEEEEecCCCCcccCCCc------cccccccccccceeEEEecccCC-CCCCCC--------HHHHHHHhhhhCCcEE
Q 013217          109 PHDRIMGLDLPHGGHLSHGF------MTPKRRVSGTSIYFESMPYRLDE-STGLVD--------YDMLEKTAILFRPKLI  173 (447)
Q Consensus       109 pgd~Vl~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~-~~~~id--------~~~l~~~~~~~~~kli  173 (447)
                      .+++|++.++.|.|......      ..+..........+..++++... +....+        .++|++.+...++.+|
T Consensus       150 g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aav  229 (453)
T 4ffc_A          150 GRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAI  229 (453)
T ss_dssp             CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEE
T ss_pred             CCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEE
Confidence            45899999888765421000      00000000011123344443211 111222        4556666554345666


Q ss_pred             EEcCCCCC-C-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC----cccEEEeCCCcccC-CCCCceE
Q 013217          174 IAGASAYP-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSLR-GPRGGMI  242 (447)
Q Consensus       174 i~~~~~~~-~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~----~~Di~~~s~~K~l~-Gp~gG~i  242 (447)
                      ++.+.+.. + ..+    +++|+++|++||+++|+|++| .|+...+.. ..+.    ..|++++|  |+++ |+|.|++
T Consensus       230 i~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~-~g~g~~g~~-~a~~~~~~~pdi~t~s--K~~~~G~~~G~~  305 (453)
T 4ffc_A          230 IIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQ-TGFARTGAW-FASEHEGIVPDIVTMA--KGIAGGMPLSAV  305 (453)
T ss_dssp             EECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTT-TTTTTTSSS-STHHHHTCCCSEEEEC--GGGGTTSSCEEE
T ss_pred             EEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCc-cCCCccccc-chhhhcCCCcchHhhh--hhhcCCcCeEEE
Confidence            66643322 2 333    899999999999999999997 444322211 0111    24677654  9884 5677999


Q ss_pred             EeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH----C-CcEeee
Q 013217          243 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----L-GYKLVS  317 (447)
Q Consensus       243 ~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~-g~~~~~  317 (447)
                      ++++      ++.+.+......+..+ .+....++..++++.+..+   ++.+++.++.+++++.|.+    . ++..+.
T Consensus       306 ~~~~------~i~~~~~~~~~~~t~~-~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  375 (453)
T 4ffc_A          306 TGRA------ELMDAVYAGGLGGTYG-GNPVTCAAAVAALGVMREL---DLPARARAIEASVTSRLSALAEEVDIIGEVR  375 (453)
T ss_dssp             EEEH------HHHTTSCTTSSCCSSS-SCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCSSEEEEE
T ss_pred             EECH------HHHhhhcccCcCCCCC-cCHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE
Confidence            9987      7777666543333333 3444444445567655433   3455566666666666654    2 232222


Q ss_pred             CCCCCeeEEecCCC------CCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217          318 GGSDNHLVLVDLRP------MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  391 (447)
Q Consensus       318 ~~~~~~~~~v~~~~------~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i  391 (447)
                      +  ...++++++..      ......++.+.|.++||.+...    ..   ..+.+|++++..++    ++|++++++.|
T Consensus       376 ~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----~~---~~~~iRi~~~~~~t----~e~i~~~l~~l  442 (453)
T 4ffc_A          376 G--RGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTC----GT---FGNVIRLLPPLVIG----DDLLDEGITAL  442 (453)
T ss_dssp             E--ETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEE----CT---TSCEEEECCCTTCC----HHHHHHHHHHH
T ss_pred             e--eceEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecC----CC---CCCEEEEECCCCCC----HHHHHHHHHHH
Confidence            2  12345555532      1112456777888899998542    11   13589999887777    99999999999


Q ss_pred             HHHHHH
Q 013217          392 HEGVEI  397 (447)
Q Consensus       392 ~~~l~~  397 (447)
                      ++++..
T Consensus       443 ~~~l~~  448 (453)
T 4ffc_A          443 SDIIRA  448 (453)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998874

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.76  E-value=6.1e-16  Score=154.05  Aligned_cols=315  Identities=14%  Similarity=0.101  Sum_probs=180.3

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc--CC
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--KP  109 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~--~p  109 (447)
                      .+|.|.+++...+.+....+||       .+...++    .++++++++ ..+.   .+.++||++|+..++....  .+
T Consensus        70 ~~p~v~~A~~~~~~~~~~~~~~-------~~~~~~l----a~~l~~~~~-~~~~---v~~~~sGsea~~~al~~a~~~~~  134 (429)
T 4e77_A           70 NHPAIRQAVIEAVERGLSFGAP-------TEMEVKM----AQLVTDLVP-TMDM---VRMVNSGTEATMSAIRLARGYTG  134 (429)
T ss_dssp             TCHHHHHHHHHHHTTCSCCSSC-------CHHHHHH----HHHHHHHST-TCSE---EEEESSHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHhCcccCCC-------CHHHHHH----HHHHHhhCC-CCCE---EEEeCcHHHHHHHHHHHHHHhhC
Confidence            4799999998877653222222       1222233    357888886 3332   2345778899998887542  35


Q ss_pred             CCEEEEecCCCCcccCCCccc-ccccc-----ccccc----eeEEEecccCCCCCCCCHHHHHHHhhhh--CCcEEEEcC
Q 013217          110 HDRIMGLDLPHGGHLSHGFMT-PKRRV-----SGTSI----YFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGA  177 (447)
Q Consensus       110 gd~Vl~~~~~~~~~~~~~~~~-~~~~~-----~~~g~----~~~~~~~~~~~~~~~id~~~l~~~~~~~--~~klii~~~  177 (447)
                      +++|++.++.|.|........ .....     ...+.    ......++      ..|+++|+++++++  ++++|++.+
T Consensus       135 ~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~le~~l~~~~~~~~~vi~ep  208 (429)
T 4e77_A          135 RDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCT------YNDLASVRQAFEQYPQEVACIIVEP  208 (429)
T ss_dssp             CCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEEC------TTCHHHHHHHHHHSTTTEEEEEECS
T ss_pred             CCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecC------CCCHHHHHHHHHhcCCCEEEEEECC
Confidence            678988887765442100000 00000     00000    00011111      13899999999753  456777764


Q ss_pred             CCC-CC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccCC--CCCC-cccEEEeCCCcccC-CCCCceEEeecC
Q 013217          178 SAY-PR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPRGGMIFFKKD  247 (447)
Q Consensus       178 ~~~-~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~--~~~~-~~Di~~~s~~K~l~-Gp~gG~i~~~~~  247 (447)
                      .++ ++ ..+    +++|.++|++||+++|+|++|. |+ ..+...  ..+. ..|++++  +|+++ |.+.|++++++ 
T Consensus       209 ~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~-g~-r~g~~~~~~~~~~~pdi~t~--sK~~~~G~~~G~~~~~~-  283 (429)
T 4e77_A          209 VAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMT-GF-RVALAGAQDYYHVIPDLTCL--GKIIGGGMPVGAFGGRR-  283 (429)
T ss_dssp             SBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTT-BT-TTBTTCHHHHTTCCCSEEEE--EGGGGTTSCCEEEEECH-
T ss_pred             ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-Cc-ccCcchHHHhcCCCCCeeee--cccccCCCCeEEEEECH-
Confidence            333 23 445    8999999999999999999985 54 222110  0011 2477654  59885 56779999887 


Q ss_pred             CcchhhHHHHhhhcc--CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH----CCcEeeeCCCC
Q 013217          248 PVLGVELESAINNAV--FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----LGYKLVSGGSD  321 (447)
Q Consensus       248 ~~~~~~~~~~i~~~~--~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~~  321 (447)
                           ++.+.+....  ..+...+.+...+++..++++.+..+   ++.+++.++.+++++.|.+    .++.....+ .
T Consensus       284 -----~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~  354 (429)
T 4e77_A          284 -----EVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQV---GVYETLTELTDSLATGLRHAAKEENIPLVVNH-V  354 (429)
T ss_dssp             -----HHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTST---THHHHHHHHHHHHHHHHHHHHHHTTCCCEEEE-E
T ss_pred             -----HHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCceEEEE-e
Confidence                 6777665421  11112234566666666678776543   3456667777777777655    344322211 2


Q ss_pred             CeeEEecCCCCC-------------CCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHH
Q 013217          322 NHLVLVDLRPMG-------------IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIA  388 (447)
Q Consensus       322 ~~~~~v~~~~~~-------------~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~  388 (447)
                      ..++++.+....             ....++.+.|.++||.+...    .     ..++|++  ..++    ++|+++++
T Consensus       355 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~----~-----~~~~~~~--~~~t----~e~i~~~l  419 (429)
T 4e77_A          355 GGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPS----A-----FEAGFMS--LAHS----NEDIQKTV  419 (429)
T ss_dssp             TTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSS----T-----TSCEECC--TTCC----HHHHHHHH
T ss_pred             eeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeec----C-----CCCEEEe--ccCC----HHHHHHHH
Confidence            334556654320             01256777888889998542    1     1246653  3444    99999999


Q ss_pred             HHHHHHHH
Q 013217          389 DFIHEGVE  396 (447)
Q Consensus       389 ~~i~~~l~  396 (447)
                      +.|++++.
T Consensus       420 ~~l~~~l~  427 (429)
T 4e77_A          420 NAARRCFA  427 (429)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            99998774

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.76  E-value=6.8e-16  Score=154.70  Aligned_cols=328  Identities=12%  Similarity=0.015  Sum_probs=184.5

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC-CCccceeeecCCcHHHHHHHHHHhcC--
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVYTAILK--  108 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~-~~~~~~~v~~~sGs~a~~~~~~al~~--  108 (447)
                      .+|.|.+++.+.+...  ..+....+  ..+...    ...++++++++.. .+.   .+.++||++|+.+++.....  
T Consensus        78 ~~p~v~~A~~~~~~~~--~~~~~~~~--~~~~~~----~la~~l~~~~~~~~~~~---v~~~~sGseA~~~Alk~a~~~~  146 (451)
T 3oks_A           78 SAPKVVEAVRSQVGDF--THTCFMVT--PYEGYV----AVCEQLNRLTPVRGDKR---SALFNSGSEAVENAVKIARSHT  146 (451)
T ss_dssp             TCHHHHHHHHHHHTTC--SCCTTTTS--CCHHHH----HHHHHHHHHSSCCSSEE---EEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhc--ccccCCcc--CCHHHH----HHHHHHHHhCCcCCCCE---EEEeCcHHHHHHHHHHHHHHhc
Confidence            3899999998877542  11111111  122222    3346788888744 222   23457888999999876643  


Q ss_pred             CCCEEEEecCCCCcccCCCc------cccccccccccceeEEEecccC-------CCC---CCCCHHHHHHHhhh----h
Q 013217          109 PHDRIMGLDLPHGGHLSHGF------MTPKRRVSGTSIYFESMPYRLD-------EST---GLVDYDMLEKTAIL----F  168 (447)
Q Consensus       109 pgd~Vl~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~-------~~~---~~id~~~l~~~~~~----~  168 (447)
                      .+++|++.++.|.|......      ..+..........+..++++.+       .+.   ...+++.+++.+++    .
T Consensus       147 g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~  226 (451)
T 3oks_A          147 HKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGAD  226 (451)
T ss_dssp             CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGG
T ss_pred             CCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCC
Confidence            45899998888765421000      0000000011112333443310       000   01234555454442    3


Q ss_pred             CCcEEEEcCCCC-CC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccC-CCC
Q 013217          169 RPKLIIAGASAY-PR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLR-GPR  238 (447)
Q Consensus       169 ~~klii~~~~~~-~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~-Gp~  238 (447)
                      ++.+|++.+.+. ++ ..+    +++|+++|++||+++|+|++|. |+...+.. . ...+ ..|++++  +|+++ |+|
T Consensus       227 ~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~g~~g~~~~~~~~~~~pdi~t~--sK~l~~G~~  303 (451)
T 3oks_A          227 NLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQT-GFARTGAMFACEHEGIDPDLIVT--AKGIAGGLP  303 (451)
T ss_dssp             GEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEE--CGGGGTTSS
T ss_pred             CEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc-CCCccccchhhhhcCCCCCeeee--hhhhhCCcc
Confidence            556777764332 23 333    8999999999999999999974 44332211 0 0011 2577755  59984 567


Q ss_pred             CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH----C-Cc
Q 013217          239 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----L-GY  313 (447)
Q Consensus       239 gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~-g~  313 (447)
                      .|++++++      ++.+.+......+..+ .+....++..++++.+..+   ++.+++.++.+++++.|.+    . .+
T Consensus       304 iG~v~~~~------~~~~~~~~~~~~~t~~-~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~  373 (451)
T 3oks_A          304 LSAVTGRA------EIMDSPHVSGLGGTYG-GNPIACAAALATIETIESE---GLVARAQQIEKIMKDRLGRLQAEDDRI  373 (451)
T ss_dssp             CEEEEEEH------HHHTCSCTTSBCCSSS-SCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCTTE
T ss_pred             eEEEEECH------HHHhhhcCCCcCCCCC-CCHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence            79999887      7777665433322233 3444454545567665433   3456666666777766654    2 23


Q ss_pred             EeeeCCCCCeeEEecCCC------CCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHH
Q 013217          314 KLVSGGSDNHLVLVDLRP------MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAI  387 (447)
Q Consensus       314 ~~~~~~~~~~~~~v~~~~------~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l  387 (447)
                      ..+.+ . ..++++.+..      ......++.+.|.++||.+...    ..   ....+|++++..++    ++|++++
T Consensus       374 ~~~~~-~-G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----~~---~~~~iRi~~~~~~t----~e~i~~~  440 (451)
T 3oks_A          374 GDVRG-R-GAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSC----GT---YGNVVRFLPPLSIG----DDLLNEG  440 (451)
T ss_dssp             EEEEE-E-TTEEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEE----CT---TSCEEEECCCTTCC----HHHHHHH
T ss_pred             EEEEE-e-eEEEEEEEecCccCCCCHHHHHHHHHHHHhCCcEEecC----CC---CCCEEEEECCCCCC----HHHHHHH
Confidence            22222 1 2345555422      1112456778888899998542    11   13589999887777    9999999


Q ss_pred             HHHHHHHHH
Q 013217          388 ADFIHEGVE  396 (447)
Q Consensus       388 ~~~i~~~l~  396 (447)
                      ++.|++++.
T Consensus       441 l~~l~~~l~  449 (451)
T 3oks_A          441 LDVLEEVLR  449 (451)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998875

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.76  E-value=5.3e-17  Score=161.48  Aligned_cols=322  Identities=14%  Similarity=0.023  Sum_probs=187.1

Q ss_pred             CeeEecCC--C---CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH
Q 013217           22 SLELIASE--N---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS   96 (447)
Q Consensus        22 ~i~l~~~~--n---~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs   96 (447)
                      .|++..+.  +   +.+|.|.+++.+.+.+....+|       ..+...    ...++++++++ ..+.   .+.++||+
T Consensus        54 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-------~~~~~~----~l~~~l~~~~~-~~~~---v~~~~~g~  118 (424)
T 2e7u_A           54 YLDYVMSWGPLILGHAHPKVLARVRETLERGLTFGA-------PSPLEV----ALAKKVKRAYP-FVDL---VRFVNSGT  118 (424)
T ss_dssp             EEESSGGGTTCTTCBTCHHHHHHHHHHHHTCSCCSS-------CCHHHH----HHHHHHHHHCT-TCCE---EEEESSHH
T ss_pred             EEEccccccccccCCCCHHHHHHHHHHHHhCCCCCC-------CCHHHH----HHHHHHHHhCC-CCCE---EEEeCCHH
Confidence            35555443  2   2589999999888765211111       112223    33467888885 3332   23356778


Q ss_pred             HHHHHHHHH---hcCCCCEEEEecCCCCcccCCCcccccc---c---cccccce----eEEEecccCCCCCCCCHHHHHH
Q 013217           97 PANFEVYTA---ILKPHDRIMGLDLPHGGHLSHGFMTPKR---R---VSGTSIY----FESMPYRLDESTGLVDYDMLEK  163 (447)
Q Consensus        97 ~a~~~~~~a---l~~pgd~Vl~~~~~~~~~~~~~~~~~~~---~---~~~~g~~----~~~~~~~~~~~~~~id~~~l~~  163 (447)
                      +|+..++..   +. ++|+|++.++.|.++..........   .   ....|..    ..++.++      ..|+++|++
T Consensus       119 ea~~~al~~ar~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~------~~d~~~le~  191 (424)
T 2e7u_A          119 EATMSALRLARGYT-GRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLE------YNDPEGLRE  191 (424)
T ss_dssp             HHHHHHHHHHHHHH-CCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEEC------TTCHHHHHH
T ss_pred             HHHHHHHHHHHHhh-CCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCC------CCCHHHHHH
Confidence            999988875   44 4588888888776542110000000   0   0001100    0122221      148999999


Q ss_pred             Hhhh--hCCcEEEEcCCCC-CC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-CC-CCC-cccEEEeCCCc
Q 013217          164 TAIL--FRPKLIIAGASAY-PR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-AD-PFK-YCDVVTTTTHK  232 (447)
Q Consensus       164 ~~~~--~~~klii~~~~~~-~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~~-~~~-~~Di~~~s~~K  232 (447)
                      ++++  .++++|++++.+. ++ ..+    +++|.++ ++||+++|+|++|. |+ ..+.. .. .++ ..|++  |++|
T Consensus       192 ~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~-g~-~~g~~~~~~~~~~~~di~--s~sK  266 (424)
T 2e7u_A          192 VLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMT-GF-RLAFGGATELLGLKPDLV--TLGK  266 (424)
T ss_dssp             HHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTT-TT-TSSTTHHHHHHTCCCSEE--EECG
T ss_pred             HHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcc-cc-ccchhHHHHHhCCCcchh--hhhh
Confidence            8874  2567777764332 34 566    8999999 99999999999985 65 22210 00 001 25776  5569


Q ss_pred             ccC-CCCCceEEeecCCcchhhHHHHhhhcc--CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHH
Q 013217          233 SLR-GPRGGMIFFKKDPVLGVELESAINNAV--FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLV  309 (447)
Q Consensus       233 ~l~-Gp~gG~i~~~~~~~~~~~~~~~i~~~~--~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~  309 (447)
                      +++ |.++|++++++      ++.+.+....  ..+...+.+...+++..++++.+..  .+++.+++.++.+++.+.|+
T Consensus       267 ~l~~G~~~G~~~~~~------~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~l~~~L~  338 (424)
T 2e7u_A          267 ILGGGLPAAAYAGRR------EIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEE--NPGYYAYLEDLGARLEAGLK  338 (424)
T ss_dssp             GGGTTSSCEEEEECH------HHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCcceEEEEEcH------HHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHH
Confidence            986 45789999987      6777665411  1111113345555555567766542  13457778888888888887


Q ss_pred             HC----CcEeeeCCCCCeeEEecCCCCC------------CCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCc
Q 013217          310 EL----GYKLVSGGSDNHLVLVDLRPMG------------IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPA  373 (447)
Q Consensus       310 ~~----g~~~~~~~~~~~~~~v~~~~~~------------~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~  373 (447)
                      +.    ++.....+ ...++++++....            ....++.+.|.++||.+..+    .     ..++|++  .
T Consensus       339 ~~~~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----~-----~~~~~~~--~  406 (424)
T 2e7u_A          339 EVLKEKGLPHTVNR-VGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPS----N-----FEAAFLS--V  406 (424)
T ss_dssp             HHHHHTTCCCEEEE-ETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSS----S-----SSCEECC--T
T ss_pred             HHHHhCCCceEEEe-eceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEecc----C-----CCceEee--c
Confidence            63    54321111 2335677775311            12346777788899998542    1     1246654  3


Q ss_pred             cccCCCCHHHHHHHHHHHHHH
Q 013217          374 MTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       374 ~~~~g~~~~di~~l~~~i~~~  394 (447)
                      .++    ++|++++++.|+++
T Consensus       407 ~~t----~~~i~~~l~~l~~~  423 (424)
T 2e7u_A          407 AHR----EEDVEKTLEALRKA  423 (424)
T ss_dssp             TCC----HHHHHHHHHHHHHH
T ss_pred             cCC----HHHHHHHHHHHHHh
Confidence            444    99999999998775

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.76  E-value=1.3e-16  Score=160.17  Aligned_cols=313  Identities=12%  Similarity=0.056  Sum_probs=180.8

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHH---hcC
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA---ILK  108 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~a---l~~  108 (447)
                      .+|.|.+++...+....  .+      ++   ...++....+++++.++ ..+.   .+.++||++|+..++.+   +.+
T Consensus        74 ~~~~v~~a~~~~~~~~~--~~------~~---~~~~~~~la~~l~~~~~-~~~~---v~~~~gg~eA~~~al~~ar~~~~  138 (453)
T 2cy8_A           74 GHPRVNAAIAEALSHGV--QY------AA---SHPLEVRWAERIVAAFP-SIRK---LRFTGSGTETTLLALRVARAFTG  138 (453)
T ss_dssp             TCHHHHHHHHHHHTTTC--SS------CS---SCHHHHHHHHHHHHHCT-TCSE---EEEESCHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHhCC--CC------CC---CCHHHHHHHHHHHhhCC-CCCE---EEEeCCHHHHHHHHHHHHHHhhC
Confidence            57999999988775421  11      11   12344455678888886 4432   23357778999998887   555


Q ss_pred             CCCEEEEecCCCCcccCCCccccccc---cccccce----eEEEecccCCCCCCCCHHHHHHHhhhh--CCcEEEEcCCC
Q 013217          109 PHDRIMGLDLPHGGHLSHGFMTPKRR---VSGTSIY----FESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASA  179 (447)
Q Consensus       109 pgd~Vl~~~~~~~~~~~~~~~~~~~~---~~~~g~~----~~~~~~~~~~~~~~id~~~l~~~~~~~--~~klii~~~~~  179 (447)
                       +|+|++.++.|.|............   ....|..    ..++.++      ..|+++|+++++++  ++++|++++.+
T Consensus       139 -~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~d~~~le~~l~~~~~~~~~vi~ep~~  211 (453)
T 2cy8_A          139 -RRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIR------PDDIEGMREVFANHGSDIAAFIAEPVG  211 (453)
T ss_dssp             -CCEEEEECC----------------------------CGGGEEEEC------TTCHHHHHHHHHHHGGGEEEEEECSSE
T ss_pred             -CCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecC------CCCHHHHHHHHHhcCCCEEEEEECCCC
Confidence             4688888877655421110000000   0001110    0111211      14899999998742  67788877543


Q ss_pred             C-CC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccCC--CCCC-cccEEEeCCCcccC-CCCCceEEeecCCc
Q 013217          180 Y-PR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPRGGMIFFKKDPV  249 (447)
Q Consensus       180 ~-~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~--~~~~-~~Di~~~s~~K~l~-Gp~gG~i~~~~~~~  249 (447)
                      + ++ ..+    +++|.++|++||+++|+|++|. |+ ..+...  ..++ ..|++  |++|+|+ |.++|++++++   
T Consensus       212 ~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~-~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~v~~~~---  284 (453)
T 2cy8_A          212 SHFGVTPVSDSFLREGAELARQYGALFILDEVIS-GF-RVGNHGMQALLDVQPDLT--CLAKASAGGLPGGILGGRE---  284 (453)
T ss_dssp             HHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTT-TT-TTCTTHHHHHHTCCCSEE--EEEGGGGTTSSCEEEEECH---
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcc-cc-ccCchhhhHHhCCCCcEE--EEChhhhCCcceEEEechH---
Confidence            3 23 456    8999999999999999999985 65 322100  0001 25776  4559986 56789999987   


Q ss_pred             chhhHHHHhhh---c-cCCCCCCCCcHHHHHHHHHHHHH-hcChhHHHHHHHHHHHHHHHHHHHHHC----CcEeeeCCC
Q 013217          250 LGVELESAINN---A-VFPGLQGGPHNHTIGGLAVCLKH-AQSPEFKVYQNKVVSNCRALASRLVEL----GYKLVSGGS  320 (447)
Q Consensus       250 ~~~~~~~~i~~---~-~~~~~~g~p~~~~~aal~~al~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~  320 (447)
                         ++.+.+..   . ...+...+.+...+++..++++. + .+   ++.+++.++.+++.+.|++.    ++.....+ 
T Consensus       285 ---~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~-~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-  356 (453)
T 2cy8_A          285 ---DVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL-ED---DVCAKINDLGQFAREAMNHLFARKGLNWLAYG-  356 (453)
T ss_dssp             ---HHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH-HT---THHHHHHHHHHHHHHHHHHHHHHTTCCEEEEC-
T ss_pred             ---HHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh-hh---hHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEE-
Confidence               67766654   1 01111123455555555567776 4 22   34567777788888877652    44221122 


Q ss_pred             CCeeEEecCCC-----C-------------CCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHH
Q 013217          321 DNHLVLVDLRP-----M-------------GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEK  382 (447)
Q Consensus       321 ~~~~~~v~~~~-----~-------------~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~  382 (447)
                      ...++++++..     .             .....++.+.|.++||.+.    |+       +.+|++  ..++    ++
T Consensus       357 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~v~----~~-------~~~~l~--~~~t----~~  419 (453)
T 2cy8_A          357 RFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVDIG----GR-------GSVFLS--AQHE----RE  419 (453)
T ss_dssp             CTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTTEECB----TT-------TEEECC--TTCC----HH
T ss_pred             eeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHCCeEEe----CC-------CCEEee--ccCC----HH
Confidence            23456777653     1             0124567778888999983    21       246653  4444    99


Q ss_pred             HHHHHHHHHHHHHHHH
Q 013217          383 EFVAIADFIHEGVEIT  398 (447)
Q Consensus       383 di~~l~~~i~~~l~~~  398 (447)
                      |++++++.|++++...
T Consensus       420 ~i~~~l~~l~~~l~~~  435 (453)
T 2cy8_A          420 HVEHLVTTFDRVLDRL  435 (453)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998754

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.75  E-value=2.6e-18  Score=170.95  Aligned_cols=322  Identities=10%  Similarity=0.010  Sum_probs=195.4

Q ss_pred             cCeeEecCCCCC--CHHHHHHHhhhhhccCCC--CCCCCcccCchhHHHHHHHHHHHHHHHHcC--CCCCccceeeecCC
Q 013217           21 KSLELIASENFT--SRAVMEAVGSCLTNKYSE--GLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLS   94 (447)
Q Consensus        21 ~~i~l~~~~n~~--~~~v~~a~~~~~~~~~~~--g~~~~~~~~g~~~~~~le~~~~~~~~~~~g--~~~~~~~~~v~~~s   94 (447)
                      ..++|..+++..  ++.+++++...+...-..  +|+...  .|.....++++...+++.+..+  ++++    +|.+++
T Consensus        57 ~~i~l~~g~~~~~~~~~v~~a~~~~l~~~~~~~~~Y~~~~--~G~~~~~~lr~aia~~~~~~~~~~~~~~----~iv~t~  130 (427)
T 2hox_A           57 CSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNP--VSNFISFELEKTIKELHEVVGNAAAKDR----YIVFGV  130 (427)
T ss_dssp             CCEECCSCCCGGGHHHHTTSHHHHCEEECTTTTCSSSCSS--CCTTCCHHHHHHHHHHHHHHTCBCCTTC----EEEEES
T ss_pred             ceEEecCcCCCCCCCHHHHHhHHhhhhcCCcccccCCCCC--CCccchHHHHHHHHHHHHHhCCcCCCCC----EEEEeC
Confidence            346777777743  356677776655221011  243321  0211134566555555555443  3444    344577


Q ss_pred             cH-HHHHHHHHHh--------cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHh
Q 013217           95 GS-PANFEVYTAI--------LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTA  165 (447)
Q Consensus        95 Gs-~a~~~~~~al--------~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~  165 (447)
                      |+ +++..++.++        ++|||+|++.+|.|.++..        .+...|.  +++.       +.+|+++|++++
T Consensus       131 G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~--------~~~~~g~--~~~~-------~~~d~~~l~~~~  193 (427)
T 2hox_A          131 GVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFRE--------QTKYFDK--KGYV-------WAGNAANYVNVS  193 (427)
T ss_dssp             HHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHH--------HHHHSCB--TTEE-------EEEEGGGGTTCS
T ss_pred             CHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHH--------HHHHcCC--eeee-------ecCCHHHHHHhh
Confidence            76 8999999999        9999999999998866431        2233343  2222       346778888777


Q ss_pred             hhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCC-CcccEEEeCCCccc--CCCCCc
Q 013217          166 ILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-KYCDVVTTTTHKSL--RGPRGG  240 (447)
Q Consensus       166 ~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~-~~~Di~~~s~~K~l--~Gp~gG  240 (447)
                      ++ ++|+|+++.++||+  ..+ +    +++  ++..+.|++++....  ..  ..+ ...+++++|+||++  +|.|.|
T Consensus       194 ~~-~~k~v~l~~p~NPtG~~~~-~----~l~--~~~~i~d~~~~~~~~--s~--~~~~~~~~i~~~S~SK~~g~~G~RiG  261 (427)
T 2hox_A          194 NP-EQYIEMVTSPNNPEGLLRH-A----VIK--GCKSIYDMVYYWPHY--TP--IKYKADEDILLFTMSKFTGHSGSRFG  261 (427)
T ss_dssp             CG-GGEEEEEESSCTTTCCCCC-C----SST--TCEEEEECTTCSTTT--SC--CCSCBCCSEEEEEHHHHTSCGGGCCE
T ss_pred             cC-CceEEEEcCCCCCcccccH-H----HHc--CCCEEEeecccCCCC--Cc--cccCCCceEEEEeChhcCCCCCceEE
Confidence            66 78999988888886  556 3    333  567888887642110  00  111 24689999999986  477889


Q ss_pred             eEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc----------ChhHHHHHHHHHHHHHHHHHHHHH
Q 013217          241 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ----------SPEFKVYQNKVVSNCRALASRLVE  310 (447)
Q Consensus       241 ~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~----------~~~~~~~~~~~~~~~~~l~~~L~~  310 (447)
                      +++++++     ++.+.+.........+.+...+.+ +..+++...          ...+++..+++.++++.+.+.|++
T Consensus       262 ~~~~~~~-----~l~~~l~~~~~~~~~~~~~~~q~a-~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  335 (427)
T 2hox_A          262 WALIKDE-----SVYNNLLNYMTKNTEGTPRETQLR-SLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQ  335 (427)
T ss_dssp             EEEECCH-----HHHHHHHHHHHHHTSSCCHHHHHH-HHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEECCH-----HHHHHHHHHHHhcCCCCCHHHHHH-HHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999532     677766654322223333333333 334555321          223355667888889999999988


Q ss_pred             C-CcEe--ee-C----------CCCCeeEEecCCCCCCCHHHHH-HHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccc
Q 013217          311 L-GYKL--VS-G----------GSDNHLVLVDLRPMGIDGARVE-KILDMASITLNKNSVPGDKSALVPGGIRIGSPAMT  375 (447)
Q Consensus       311 ~-g~~~--~~-~----------~~~~~~~~v~~~~~~~~~~~~~-~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~  375 (447)
                      . |+.+  +. +          +....++|+++..   +..++. .+|+++||.+..+...+.    .++++|+++..  
T Consensus       336 ~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~---~~~~~~~~ll~~~gI~v~pg~~f~~----~~~~~Ris~~~--  406 (427)
T 2hox_A          336 SDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW---EEDKDCYQTFQNGRINTQNGVGFEA----SSRYVRLSLIK--  406 (427)
T ss_dssp             SSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS---GGGCSHHHHHHHTTEECEEGGGGTS----CTTEEEEECSS--
T ss_pred             CcCccccccccccccccccccCCCCceEEEEECCC---cHHHHHHHHHHHCCEEEcCCCccCC----CCCEEEEEecC--
Confidence            5 7765  11 1          1224567888753   333444 455789999975432221    35689999762  


Q ss_pred             cCCCCHHHHHHHHHHHHHHHH
Q 013217          376 TRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       376 ~~g~~~~di~~l~~~i~~~l~  396 (447)
                      +    ++++++.++.|.+++.
T Consensus       407 ~----~e~l~~~l~~l~~~~~  423 (427)
T 2hox_A          407 T----QDDFDQLMYYLKDMVK  423 (427)
T ss_dssp             C----HHHHHHHHHHHHHHHT
T ss_pred             C----HHHHHHHHHHHHHHHh
Confidence            4    7889999888887764

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.70  E-value=1.9e-15  Score=152.18  Aligned_cols=317  Identities=13%  Similarity=0.101  Sum_probs=182.1

Q ss_pred             CCHHHHHHHhhhhhcc-CCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc---
Q 013217           32 TSRAVMEAVGSCLTNK-YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---  107 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~-~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~---  107 (447)
                      .+|.|.+|+...+... +..+  . . ++. ....++++.+.++++++++...+.   .+.++||++||..++..+.   
T Consensus        80 ~~p~v~~A~~~~~~~~~~~~~--~-~-~~~-~~~~~l~~~la~~l~~~~~~~~~~---v~f~~sGseA~~~Aik~a~~~~  151 (472)
T 1ohv_A           80 SHPALVKLVQQPQNVSTFINR--P-A-LGI-LPPENFVEKLRESLLSVAPKGMSQ---LITMACGSCSNENAFKTIFMWY  151 (472)
T ss_dssp             TCHHHHHHHHCGGGHHHHHCC--C-C-TTT-SCBTTHHHHHHHTGGGGCCTTCCE---EEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhhcccccc--c-c-ccc-ccHHHHHHHHHHHHHHhCCCCcCE---EEEeCCchhHHHHHHHHHHHHh
Confidence            3899999998765321 1111  0 1 111 111234433344566666444332   2345889999999987663   


Q ss_pred             -----C-----------------CC---CEEEEecCCCCcccCCCccccccccccccce-----------eEEEecccC-
Q 013217          108 -----K-----------------PH---DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----------FESMPYRLD-  150 (447)
Q Consensus       108 -----~-----------------pg---d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~-----------~~~~~~~~~-  150 (447)
                           .                 ||   ++|+++++.|.|+...       .+.+.|..           +..++++.. 
T Consensus       152 ~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~-------~~~~~g~~~~~~~~~~~~~~~~~~~p~~~  224 (472)
T 1ohv_A          152 RSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMG-------CLATTHSKAIHKIDIPSFDWPIAPFPRLK  224 (472)
T ss_dssp             HHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHH-------HHHHCCSCHHHHTTSCCCCCCEECCCCCC
T ss_pred             hhhccCcccccccccccccccccccCCCCeEEEECCCcccccHH-------HHhcCCCccccccCCCCCCCcccCCCccc
Confidence                 1                 56   8999998776554211       11111110           011122110 


Q ss_pred             -C--CC-------CCCCHHHHHHHhhhh-----CCcEEEEcCC-CCCC-CCC----hHHHHHHHHHhCCEEEEehhhhcc
Q 013217          151 -E--ST-------GLVDYDMLEKTAILF-----RPKLIIAGAS-AYPR-DFD----YPRMRQIADAVGALLMMDMAHISG  209 (447)
Q Consensus       151 -~--~~-------~~id~~~l~~~~~~~-----~~klii~~~~-~~~~-~~~----~~~i~~ia~~~g~~livD~a~~~g  209 (447)
                       +  ..       ...|+++|+++++++     ++++|++.+. +..+ ..+    +++|+++|++||+++|+|++|. |
T Consensus       225 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~-g  303 (472)
T 1ohv_A          225 YPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQT-G  303 (472)
T ss_dssp             SSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTT-T
T ss_pred             CccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCccc-C
Confidence             0  00       023789999988763     6788888743 3344 556    8999999999999999999985 4


Q ss_pred             ccccccC-C---CCCC-cccEEEeCCCcc-cCCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHH
Q 013217          210 LVAASVV-A---DPFK-YCDVVTTTTHKS-LRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLK  283 (447)
Q Consensus       210 ~~~~~~~-~---~~~~-~~Di~~~s~~K~-l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~  283 (447)
                      +...+.. .   ..+. ..|++++|  |+ ++   ||+++ ++      ++. .+......++. +.+...+++..++++
T Consensus       304 ~g~~g~~~~~~~~gv~~~~Di~t~s--K~~l~---GG~~~-~~------~~~-~~~~~~~~~T~-~~~~~~~aaa~aal~  369 (472)
T 1ohv_A          304 GGSTGKFWAHEHWGLDDPADVMTFS--KKMMT---GGFFH-KE------EFR-PNAPYRIFNTW-LGDPSKNLLLAEVIN  369 (472)
T ss_dssp             TTTTSSSSGGGGGCCSSCCSEEEEC--GGGSS---EEEEE-CG------GGS-CSSSSSSCCSS-SSCHHHHHHHHHHHH
T ss_pred             CCCCCCchhccccCCCCCCCEEEEc--ccccc---CCccC-ch------hhc-ccccccccCcc-CccHHHHHHHHHHHH
Confidence            3322210 0   0110 16877655  98 44   47776 44      431 11111111222 234555555556777


Q ss_pred             HhcChhHHHHHHHHHHHHHHHHHHHHHC--C----cEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCC
Q 013217          284 HAQSPEFKVYQNKVVSNCRALASRLVEL--G----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPG  357 (447)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~  357 (447)
                      .+.+++   +.+++.++.++|.+.|.+.  +    +..+.+  ...++++++.. ..+...+.+.|.++||.+...    
T Consensus       370 ~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~--~g~~~~~~~~~-~~~~~~~~~~l~~~Gv~~~~~----  439 (472)
T 1ohv_A          370 IIKRED---LLSNAAHAGKVLLTGLLDLQARYPQFISRVRG--RGTFCSFDTPD-ESIRNKLISIARNKGVMLGGC----  439 (472)
T ss_dssp             HHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEE--ETTEEEEECSS-HHHHHHHHHHHHHTTEECEEE----
T ss_pred             HHHhCC---HHHHHHHHHHHHHHHHHHHHhhCCCcEEeecC--CceEEEEEeCC-hhHHHHHHHHHHHCCeEEecC----
Confidence            654333   4667777888888888663  2    222222  23345556542 112456777787899998531    


Q ss_pred             CCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          358 DKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       358 ~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                           ..+.||++++..++    ++|++++++.|++++..
T Consensus       440 -----g~~~iRi~~~~~~t----~e~i~~~~~~l~~~l~~  470 (472)
T 1ohv_A          440 -----GDKSIRFRPTLVFR----DHHAHLFLNIFSDILAD  470 (472)
T ss_dssp             -----TTTEEEECCCTTCC----HHHHHHHHHHHHHHHHT
T ss_pred             -----CCCEEEEECCCCCC----HHHHHHHHHHHHHHHHh
Confidence                 13589999988887    99999999999988763

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.58  E-value=1.4e-12  Score=129.28  Aligned_cols=309  Identities=18%  Similarity=0.125  Sum_probs=173.7

Q ss_pred             CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc--CCC
Q 013217           33 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--KPH  110 (447)
Q Consensus        33 ~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~--~pg  110 (447)
                      .|.|.+|+.+.+.+....+       ..+....+++    +++++.+..-. .   ...++||++|+..++....  ...
T Consensus       105 hp~v~~Av~~q~~~~~~~~-------~~~~~~~~la----e~l~~~~p~~~-~---v~f~~SGsEA~e~AiklAr~~tgr  169 (454)
T 4ao9_A          105 APEIRDAVIEAMQGGINLT-------GHNLLEGRLA----RLICERFPQIE-Q---LRFTNSGTEANLMALTAALHFTGR  169 (454)
T ss_dssp             CHHHHHHHHHHHHTCSCCC-------SEESSHHHHH----HHHHHHSTTCS-E---EEEESSHHHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHhcCCCcc-------CCcHHHHHHH----HHHHHhCCCCC-E---EEEeCchHHHHHHHHHHHHhcccC
Confidence            6999999888776532111       1122222333    56777764221 1   2335899999999887542  234


Q ss_pred             CEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhC--CcEEEEcCC-CCCC-CCC-
Q 013217          111 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR--PKLIIAGAS-AYPR-DFD-  185 (447)
Q Consensus       111 d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~--~klii~~~~-~~~~-~~~-  185 (447)
                      ++|+...-.|.|+.. +.....   ...........++      .-|.+.+++.++++.  +.+||+.+. .+.+ ..+ 
T Consensus       170 ~~ii~~~~~yHG~t~-~~~~~~---~~~~~~~~~~~~p------~nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~  239 (454)
T 4ao9_A          170 RKIVVFSGGYHGGVL-GFGARP---SPTTVPFDFLVLP------YNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQ  239 (454)
T ss_dssp             CEEEEETTCBCSTTC-BBSSSB---CTTSCCSEEEEEC------TTCHHHHHHHHHHTGGGEEEEEECSEESTTTCEECC
T ss_pred             CeEEEEeCCcCCccc-cccccc---cCccCCCCcccCC------CchHHHHHHHHhhcCCceEEEEeccccCCCCccCCc
Confidence            688887766544321 110000   0001111222222      247899999887643  456777531 2233 333 


Q ss_pred             ---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-cccEEEeCCCcccCC-CCCceEEeecCCcchhhHHHHhhh
Q 013217          186 ---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRG-PRGGMIFFKKDPVLGVELESAINN  260 (447)
Q Consensus       186 ---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-~~Di~~~s~~K~l~G-p~gG~i~~~~~~~~~~~~~~~i~~  260 (447)
                         +++|+++|++||+++|+|++|. |-+.......-++ ..|+++.+  |.++| .+.|.+.+++      ++.+.+..
T Consensus       240 ~~fL~~lr~lc~~~g~lLI~DEV~t-GR~G~~~a~e~~gv~PDi~t~g--K~lggG~Piga~~~~~------ei~~~~~~  310 (454)
T 4ao9_A          240 PDFLQALRESATQVGALLVFDEVMT-SRLAPHGLANKLGIRSDLTTLG--KYIGGGMSFGAFGGRA------DVMALFDP  310 (454)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEECTTG-GGGSTTCHHHHHTCCCSEEEEE--GGGGTTSSCEEEEECH------HHHGGGCT
T ss_pred             hhhHHHHHHHHhhcCCEEEEECCCc-CCCccccchhccCCCCcEEEec--cccCCCCcceeeeeHH------HHHHHHhh
Confidence               7999999999999999999985 5332211000001 25898776  88854 4458888888      77777654


Q ss_pred             ccCCCCC-C--CCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH----CCc--EeeeCCCCCeeEEecCCC
Q 013217          261 AVFPGLQ-G--GPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----LGY--KLVSGGSDNHLVLVDLRP  331 (447)
Q Consensus       261 ~~~~~~~-g--~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~--~~~~~~~~~~~~~v~~~~  331 (447)
                      ...+..+ +  +.|...+++..++|+.+.+++   ..+++.++.++|++.|++    .++  .+..-+  .. +-+.+..
T Consensus       311 ~~~~~~h~~T~~gnPla~AAala~L~~l~~~~---~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G--~m-~gi~f~~  384 (454)
T 4ao9_A          311 RTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPE---AAGALAERGEALRARLNALCANEGVAMQFTGIG--SL-MNAHFVQ  384 (454)
T ss_dssp             TTCSCCCCCTTTTCHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEET--TE-EEEESCC
T ss_pred             ccCCccccCCCCCCHHHHHHHHHHHHHHhccC---hhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeec--eE-EEEEEec
Confidence            3211111 1  224555665556788776654   466777778888887765    232  222111  21 1122211


Q ss_pred             C---------CCCH---HHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          332 M---------GIDG---ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       332 ~---------~~~~---~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      .         ..+.   ..+...|.++||.+.+           .+.+.+++  .+|    ++|+++++++|++++...
T Consensus       385 ~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~p-----------~~~~~~s~--~~T----~~dId~~l~al~~~l~~~  446 (454)
T 4ao9_A          385 GDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSSP-----------RGFVVLSL--PLT----DADIDRYVAAIGSFIGGH  446 (454)
T ss_dssp             SCCCSGGGGTTCCHHHHHHHHHHHHHTTEECCT-----------TCEEECCT--TCC----HHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEcC-----------CCCEEEeC--CCC----HHHHHHHHHHHHHHHHhc
Confidence            1         1122   2345567789998732           12344443  244    999999999999999864

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.32  E-value=3.4e-16  Score=156.30  Aligned_cols=320  Identities=13%  Similarity=0.020  Sum_probs=178.8

Q ss_pred             CeeEecCCCC-----CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHc-CCCCCccceeeecCCc
Q 013217           22 SLELIASENF-----TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF-NLDENKWGVNVQPLSG   95 (447)
Q Consensus        22 ~i~l~~~~n~-----~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~-g~~~~~~~~~v~~~sG   95 (447)
                      .|++..+...     .+|.|.+++.+.+.+....+|+       .+...++    .+++++++ +.+.     .+.++||
T Consensus       102 yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~~~~~~-------~~~~~~L----ae~L~~~~p~~~~-----v~~~nSG  165 (465)
T 2yky_A          102 YVNFLGEYTAGLFGHSHPVIRAAVERALAVGLNLSTQ-------TENEALF----AEAVCDRFPSIDL-----VRFTNSG  165 (465)
Confidence            4555544331     2678888877665442111111       1222233    35777787 4332     2345889


Q ss_pred             HHHHHHHHHHhc--CCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhh--hCCc
Q 013217           96 SPANFEVYTAIL--KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL--FRPK  171 (447)
Q Consensus        96 s~a~~~~~~al~--~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~--~~~k  171 (447)
                      ++|+..++....  ..+|+|++.+..|.|+..... .   .....|....++.++      ..|+++|++++++  .+++
T Consensus       166 seA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~-s---g~~~~g~~~~~~~~~------~~d~~~l~~~l~~~~~~~a  235 (465)
T 2yky_A          166 TEANLMALATATAITGRKTVLAFDGGYHGGLLNFA-S---GHAPTNAPYHVVLGV------YNDVEGTADLLKRHGHDCA  235 (465)
Confidence            999999887652  456899998877655321100 0   000011100112222      1478999998873  3788


Q ss_pred             EEEEcCC-CCCC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccCC-CCCC-cccEEEeCCCcccC-CCCCceE
Q 013217          172 LIIAGAS-AYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA-DPFK-YCDVVTTTTHKSLR-GPRGGMI  242 (447)
Q Consensus       172 lii~~~~-~~~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~-~~~~-~~Di~~~s~~K~l~-Gp~gG~i  242 (447)
                      +|++.+. ++++ ..+    +++|+++|+++|+++|+|++|. + ....... ...+ ..|++  |++|+++ |.+.|++
T Consensus       236 avi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~-r~g~~~a~~~~gv~pDi~--t~sK~lg~G~piG~v  311 (465)
T 2yky_A          236 AILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-S-RLSGGGAQEMLGISADLT--TLGKYIGGGMSFGAF  311 (465)
Confidence            8888742 3344 444    8999999999999999999987 4 2111100 0011 24665  5679985 4566999


Q ss_pred             EeecCCcchhhHHHHhhhc----cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC--CcEee
Q 013217          243 FFKKDPVLGVELESAINNA----VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLV  316 (447)
Q Consensus       243 ~~~~~~~~~~~~~~~i~~~----~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~  316 (447)
                      ++++      ++.+.+...    .+.+...+.+...+++..++++.+.++   ++.+++.++.++|++.|++.  .+.+.
T Consensus       312 ~~~~------~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~  382 (465)
T 2yky_A          312 GGRR------DLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYTR---QAASDLSASGDRFRANLNRIAVENQAP  382 (465)
Confidence            9888      676666541    111111122333444444567766543   34667777788888877663  22221


Q ss_pred             --eCCCCCeeEEecCCCCCC------------CHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHH
Q 013217          317 --SGGSDNHLVLVDLRPMGI------------DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEK  382 (447)
Q Consensus       317 --~~~~~~~~~~v~~~~~~~------------~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~  382 (447)
                        ..+ ...++++.+....+            ....+.+.|.++||.+...    .   +   ..   ++..++    ++
T Consensus       383 ~~v~g-~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~----~---~---~~---~s~~~t----~e  444 (465)
T 2yky_A          383 LQFTG-LGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAPR----G---M---YA---LSLEIA----DA  444 (465)
Confidence              111 22344554432000            1345667777899998532    1   0   01   233344    99


Q ss_pred             HHHHHHHHHHHHHHHH
Q 013217          383 EFVAIADFIHEGVEIT  398 (447)
Q Consensus       383 di~~l~~~i~~~l~~~  398 (447)
                      |+++++++|.+++...
T Consensus       445 did~~l~~l~~~l~~~  460 (465)
T 2yky_A          445 GRDAFAEALADFIGEQ  460 (465)
Confidence            9999999999887643

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=99.48  E-value=1.5e-10  Score=115.09  Aligned_cols=331  Identities=15%  Similarity=0.129  Sum_probs=173.7

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh--cCC
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP  109 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al--~~p  109 (447)
                      -.|.|.+|+.+.+.+- ...  .. +....+.  .++  ..+++.+++..+..+.  .+.++||++|+..++...  ...
T Consensus        81 ~~p~v~~Ai~~q~~~~-~~~--~~-~~~~~~~--~~~--lae~L~~~~p~~~~~~--v~f~~sGsEA~e~AlklAr~~t~  150 (456)
T 4atq_A           81 SDPAVVAAVQEAAAHF-THT--CF-MVTPYEG--YVA--VTEQLNRLTPGDHAKR--TVLFNSGAEAVENAVKVARLATG  150 (456)
T ss_dssp             TCHHHHHHHHHHHHHC-SCC--TT-TTSCCHH--HHH--HHHHHHHHSSCSSCEE--EEEESSHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHhhc-cCc--cc-CccCcHH--HHH--HHHHHHHhCCCCCCcE--EEEeCChHHHHHHHHHHHhhhhc
Confidence            3689999987766542 111  10 1111111  121  2356777775432211  233589999999888643  234


Q ss_pred             CCEEEEecCCCCccc------CCCccccccccccccceeEEEecccC--CC-CCCCCHHHHHHHhh-------hhCCcEE
Q 013217          110 HDRIMGLDLPHGGHL------SHGFMTPKRRVSGTSIYFESMPYRLD--ES-TGLVDYDMLEKTAI-------LFRPKLI  173 (447)
Q Consensus       110 gd~Vl~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~--~~-~~~id~~~l~~~~~-------~~~~kli  173 (447)
                      ..+|+...-.|.|.-      +...........-....+..++++..  .. ....+.+.+++.++       ..++.+|
T Consensus       151 r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAv  230 (456)
T 4atq_A          151 RDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAI  230 (456)
T ss_dssp             CCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEE
T ss_pred             CCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEE
Confidence            578888876654431      00000000000000011222333221  11 11233444433332       2345677


Q ss_pred             EEcCC-CCCC-CC----ChHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccC-CCCCceEE
Q 013217          174 IAGAS-AYPR-DF----DYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLR-GPRGGMIF  243 (447)
Q Consensus       174 i~~~~-~~~~-~~----~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~-Gp~gG~i~  243 (447)
                      |+.+- ...+ ..    =+++++++|++||+++|+|++| .|+--.|.. . ..++ ..|+++++  |.++ |.+.|.++
T Consensus       231 ivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~-tG~GRtG~~~a~e~~gv~PDivt~g--K~lggg~P~~av~  307 (456)
T 4atq_A          231 IIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQ-SGFCRTGEWFAVDHEGVVPDIITMA--KGIAGGLPLSAIT  307 (456)
T ss_dssp             EECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTT-TTTTTTSSSSGGGGTTCCCSEEEEC--GGGGTTSSCEEEE
T ss_pred             EeccccCCCCccccchhhhHHHHHHHhhcCCceEecccc-cccCCccccccccccCCCCchhhhh--hcccCcCCceeeE
Confidence            77632 1222 11    2799999999999999999998 443222211 0 0011 26999887  8875 34457888


Q ss_pred             eecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC----C---cEee
Q 013217          244 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL----G---YKLV  316 (447)
Q Consensus       244 ~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g---~~~~  316 (447)
                      +++      ++.+.+......+++++ |...+++..+.++.+.++++   .++..+..++|.+.|++.    .   ..++
T Consensus       308 ~~~------~i~~~~~~~~~~~Tf~g-npla~aaala~L~~i~~~~l---~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v  377 (456)
T 4atq_A          308 GRA------DLLDAVHPGGLGGTYGG-NPVACAAALAAIDTMEQHDL---NGRARHIEELALGKLRELAAELSAGGGSVV  377 (456)
T ss_dssp             EEH------HHHTTSCTTSSCCSSSS-CHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHHHCC-----CE
T ss_pred             ecH------HHHhcccccCCCCCCCC-ChHHHHhhHHHHHHHhhccH---HHHHHHHHHHHHHHHHHHHHhcccccCCce
Confidence            887      67666654433333333 45555555557777765544   445555556666665541    1   1222


Q ss_pred             eC--CCCCeeEEecCCCCC---CC---HHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHH
Q 013217          317 SG--GSDNHLVLVDLRPMG---ID---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIA  388 (447)
Q Consensus       317 ~~--~~~~~~~~v~~~~~~---~~---~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~  388 (447)
                      .+  +... +.-+++....   -+   ...+.+.|.++|+.+...   +    .....||+.++...|    ++|++++.
T Consensus       378 ~~VRG~Gl-~~giel~~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~---g----~~~~~irl~PpL~it----~~~id~~l  445 (456)
T 4atq_A          378 GDIRGRGA-MLAIELVQPGSKEPNAELTKAVAAACLKEGVIILTC---G----TYGNVIRLLPPLVIS----DELLIDGL  445 (456)
T ss_dssp             EEEEEETT-EEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECEEE---C----TTSCEEEECCCTTCC----HHHHHHHH
T ss_pred             EEeeecce-EEEEEEecCCCCCcCHHHHHHHHHHHHHCCCEEEec---C----CCCCEEEEECCCCCC----HHHHHHHH
Confidence            21  1111 2223332211   11   245677788899987542   1    113479999886666    99999999


Q ss_pred             HHHHHHHHH
Q 013217          389 DFIHEGVEI  397 (447)
Q Consensus       389 ~~i~~~l~~  397 (447)
                      ++|.++|+.
T Consensus       446 ~~l~~al~a  454 (456)
T 4atq_A          446 EVLAAAIKA  454 (456)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999873

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=99.30  E-value=2.1e-09  Score=107.29  Aligned_cols=327  Identities=12%  Similarity=0.080  Sum_probs=173.0

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc----
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  107 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~----  107 (447)
                      -.|.+.+|+...+.+-.  .+ + .+++ ......++  ..+++.++...+.+.   .....||++|+..++....    
T Consensus        84 ~~p~v~~Ai~~q~~~l~--~~-~-~~~~-~~~~~~~~--lAe~L~~~~p~~~~~---v~f~~sGsEA~e~AiKlAr~~~~  153 (473)
T 4e3q_A           84 DHKGLIDAAKAQYERFP--GY-H-AFFG-RMSDQTVM--LSEKLVEVSPFDSGR---VFYTNSGSEANDTMVKMLWFLHA  153 (473)
T ss_dssp             CCHHHHHHHHHHHHHCC--CC-C-CCTT-EEEHHHHH--HHHHHHHHSSCSSCE---EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcc--cc-c-cccc-ccCHHHHH--HHHHHHhhCCCCccE---EEEeCchHHHHHHHHHHHHHHHH
Confidence            36999999887775421  01 0 1111 11111222  235777787654322   2335899999998886432    


Q ss_pred             ---CCC-CEEEEecCCCCcccC----CCcccccccc--ccccceeEEEeccc--C-CCCCCC-------CHHHHHHHhhh
Q 013217          108 ---KPH-DRIMGLDLPHGGHLS----HGFMTPKRRV--SGTSIYFESMPYRL--D-ESTGLV-------DYDMLEKTAIL  167 (447)
Q Consensus       108 ---~pg-d~Vl~~~~~~~~~~~----~~~~~~~~~~--~~~g~~~~~~~~~~--~-~~~~~i-------d~~~l~~~~~~  167 (447)
                         +++ .+|+...-.|.|.-.    .......+..  ...+  +..++.+.  . ...+..       ..+++++.+..
T Consensus       154 ~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~  231 (473)
T 4e3q_A          154 AEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPG--FVHLTCPHYWRYGEEGETEEQFVARLARELEETIQR  231 (473)
T ss_dssp             HTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTT--EEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCCcceEEEeeceECCCccccccccccccccccCCCCCc--ccccCCCcccccccccchhhHHHHHHHHHHHHHHHh
Confidence               243 467777655443210    0000000000  0001  11222111  0 011111       13455555543


Q ss_pred             h---CCcEEEEcCC-CCCC-CC----ChHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccC
Q 013217          168 F---RPKLIIAGAS-AYPR-DF----DYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLR  235 (447)
Q Consensus       168 ~---~~klii~~~~-~~~~-~~----~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~  235 (447)
                      .   ++.+|++... ...+ ..    =+++|+++|++||+++|+|+++ .|+--.+.. . ..++ ..|+++.+  |.+.
T Consensus       232 ~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~-tGfGRtG~~fa~e~~gv~PDi~t~~--K~l~  308 (473)
T 4e3q_A          232 EGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVI-CGFGRTGNTWGCVTYDFTPDAIISS--KNLT  308 (473)
T ss_dssp             HCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTT-TSSSTTSSSCHHHHTTCCCSEEEEC--GGGG
T ss_pred             hCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCcc-ccCCcccchhHHHhcCCCCChHHhc--cccc
Confidence            2   3456666522 2223 11    2699999999999999999997 454222210 0 0001 25999877  9885


Q ss_pred             C--CCCceEEeecCCcchhhHHHHhhhc------cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHH
Q 013217          236 G--PRGGMIFFKKDPVLGVELESAINNA------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASR  307 (447)
Q Consensus       236 G--p~gG~i~~~~~~~~~~~~~~~i~~~------~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~  307 (447)
                      |  .+.|.+++++      ++.+.+...      ...+.+-+-|+..+++..+.++.+.++++   .+++.+..++|.+.
T Consensus       309 gG~~Pl~av~~~~------~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~~~l---~~~~~~~g~~l~~~  379 (473)
T 4e3q_A          309 AGFFPMGAVILGP------ELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGL---AENVRRLAPRFEER  379 (473)
T ss_dssp             TTSSCCEEEEECH------HHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHHSSH---HHHHHHHHHHHHHH
T ss_pred             CCCCCcccccccH------HHHHHhccccccccccccCCCCCCCcchhhhhhhhhhhhccccH---HHHHHHHHHHHHHH
Confidence            4  4568888887      676665431      11222222355555555557777665544   55666677778887


Q ss_pred             HHHC----CcEeeeCCCCCeeEEecCCC-C----CC-----CHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCc
Q 013217          308 LVEL----GYKLVSGGSDNHLVLVDLRP-M----GI-----DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPA  373 (447)
Q Consensus       308 L~~~----g~~~~~~~~~~~~~~v~~~~-~----~~-----~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~  373 (447)
                      |++.    .+.-+.+ ..- +.-+++.. .    ..     -...+.+.+.++|+.++..          ...+|+.++.
T Consensus       380 L~~l~~~~~v~~vRG-~Gl-~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~----------g~~i~l~PPL  447 (473)
T 4e3q_A          380 LKHIAERPNIGEYRG-IGF-MWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPL----------GQSVVLCPPF  447 (473)
T ss_dssp             HHHHTTSTTEEEEEE-ETT-EEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEE----------TTEEEECCCT
T ss_pred             HHHHhcCCCeeEEee-cce-EEEEEEecCccccccccccHHHHHHHHHHHHHCCcEEEec----------CCEEEEeCCC
Confidence            7662    2211111 111 12222211 0    00     1346778888999998532          2479998876


Q ss_pred             cccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          374 MTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       374 ~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      ..|    ++|++++.+++.++|+..
T Consensus       448 ~it----~~eid~~~~~l~~al~~v  468 (473)
T 4e3q_A          448 ILT----EAQMDEMFDKLEKALDKV  468 (473)
T ss_dssp             TCC----HHHHHHHHHHHHHHHHHH
T ss_pred             CCC----HHHHHHHHHHHHHHHHHH
Confidence            666    999999999999998754

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.23  E-value=2.9e-10  Score=121.10  Aligned_cols=211  Identities=12%  Similarity=0.062  Sum_probs=121.6

Q ss_pred             HHHHHHhhh-------hCCcEEEEcCC--CCCCCC--C---hHHHHHHHHHhCCEEEEehhhhccccccccCCC--CCC-
Q 013217          159 DMLEKTAIL-------FRPKLIIAGAS--AYPRDF--D---YPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFK-  221 (447)
Q Consensus       159 ~~l~~~~~~-------~~~klii~~~~--~~~~~~--~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~--~~~-  221 (447)
                      ++|++.+++       .++.+||+.+.  +.++..  +   +++|+++|++||+++|+|++| .|+...|....  .++ 
T Consensus       577 ~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~-tGfGRtG~~fa~e~~gv  655 (831)
T 4a0g_A          577 AYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVF-TGFWRLGVETTTELLGC  655 (831)
T ss_dssp             HHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTT-TTTTTTSBSSTHHHHSS
T ss_pred             HHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCc-cccccCCCchhhHhcCC
Confidence            567777652       24567777642  333432  2   799999999999999999997 44322221100  001 


Q ss_pred             cccEEEeCCCcccCC--CCCceEEeecCCcchhhHHHHhhhc-----cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHH
Q 013217          222 YCDVVTTTTHKSLRG--PRGGMIFFKKDPVLGVELESAINNA-----VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ  294 (447)
Q Consensus       222 ~~Di~~~s~~K~l~G--p~gG~i~~~~~~~~~~~~~~~i~~~-----~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~  294 (447)
                      ..|++++|  |.|+|  .+.|++++++      ++.+.+...     ...+.+.+.+....++..++++.+.++++.   
T Consensus       656 ~PDiitls--K~L~gG~~Plgav~~~~------~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~---  724 (831)
T 4a0g_A          656 KPDIACFA--KLLTGGMVPLAVTLATD------AVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETN---  724 (831)
T ss_dssp             CCSEEEEC--GGGGTTSSCCEEEEECH------HHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTC---
T ss_pred             CCcEEEEe--cccccCccCcEEEEECH------HHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHH---
Confidence            25888655  99965  3558888888      677766432     112222233555555555677776554431   


Q ss_pred             HHHHHHHH--------HHHHHHHHC-CcEeeeCCCCCeeEEecCCCC-------CCCHHHHHHHHhhcCeEEccCCCCCC
Q 013217          295 NKVVSNCR--------ALASRLVEL-GYKLVSGGSDNHLVLVDLRPM-------GIDGARVEKILDMASITLNKNSVPGD  358 (447)
Q Consensus       295 ~~~~~~~~--------~l~~~L~~~-g~~~~~~~~~~~~~~v~~~~~-------~~~~~~~~~~L~~~gI~v~~~~~p~~  358 (447)
                      +++.++.+        .+.+.+.+. .+..+.+ . ..+..+++...       ......+.+.|.++||.++.    . 
T Consensus       725 ~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg-~-Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p----~-  797 (831)
T 4a0g_A          725 HNITSQGKTLRELWDEELVQQISSHSAVQRVVV-I-GTLFALELKADASNSGYASLYAKSLLIMLREDGIFTRP----L-  797 (831)
T ss_dssp             TTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEE-E-TTEEEEEEC---------CHHHHHHHHHHHHTTEECCC----B-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCceeEee-c-ccEEEEEEecCccccccchHHHHHHHHHHHHCCcEEEe----c-
Confidence            22211111        233445443 2322221 1 12333443211       11234677888899999853    1 


Q ss_pred             CCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          359 KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       359 ~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                           ...||+.++..++    ++|++++.+.|.++++.
T Consensus       798 -----g~~lrl~pp~~~t----~e~id~~~~~l~~~l~~  827 (831)
T 4a0g_A          798 -----GNVIYLMCGPCTS----PEICRRLLTKLYKRLGE  827 (831)
T ss_dssp             -----TTEEEEECCTTCC----HHHHHHHHHHHHHHHTT
T ss_pred             -----CCEEEEECCCCCC----HHHHHHHHHHHHHHHHH
Confidence                 3589999888777    99999999999988763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	447
d1rv3a_	470	c.67.1.4 (A:) Serine hydroxymethyltransferase {Rab	1e-178
d2a7va1	463	c.67.1.4 (A:26-488) Serine hydroxymethyltransferas	1e-171
d1dfoa_	416	c.67.1.4 (A:) Serine hydroxymethyltransferase {Esc	1e-157
d1kl1a_	405	c.67.1.4 (A:) Serine hydroxymethyltransferase {Bac	1e-155
d2v1pa1	467	c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop	2e-47
d1ax4a_	465	c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas	1e-39
d1c4ka2	462	c.67.1.5 (A:108-569) Ornithine decarboxylase major	3e-37
d1c7ga_	456	c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi	5e-33
d1m6sa_	343	c.67.1.1 (A:) Low-specificity threonine aldolase {	4e-10
d2z67a1	434	c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (	3e-07
d2e7ja1	364	c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (	6e-07

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 470

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  504 bits (1299), Expect = e-178
 Identities = 272/453 (60%), Positives = 335/453 (73%), Gaps = 11/453 (2%)

Query: 5   NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
           + EV +II KE  RQ   LELIASENF SRAV+EA+GSCL NKYS G PG+RYYGG E+I
Sbjct: 16  DAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHI 75

Query: 65  DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
           DELETLCQKRAL A+ LD   WGVNVQP SGSPANF VYTA+++PH RIMGLDLP GGHL
Sbjct: 76  DELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHL 135

Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
           +HGFMT K+++S TSI+FESM Y+++  TG +DYD LE+ A LF PKLIIAG S Y R+ 
Sbjct: 136 THGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCYSRNL 195

Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
           DY R+R+IAD  GA LM DMAHISGLV A VV  PF++C VVTTTTHK+LRG R GMIF+
Sbjct: 196 DYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFY 255

Query: 245 KKD---------PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQN 295
           ++            +   LES IN+AVFPGLQGGPHNH I G+AV LK A +PEFK YQ 
Sbjct: 256 RRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQR 315

Query: 296 KVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSV 355
           +VV+NCRAL++ LVELGYK+V+GGSDNHL+LVDLR  G DG R EK+L+  SI  NKN+ 
Sbjct: 316 QVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTC 375

Query: 356 PGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAK-KLVQGSKLQDFM 414
           PGDKSAL P G+R+G+PA+T+RG  EK+F  +A FIH G+E+T++ +      + L++F 
Sbjct: 376 PGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATLKEFK 435

Query: 415 NFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 447
             +   +      V  LR  VE+    FP+PG+
Sbjct: 436 EKLAG-DEKHQRAVRALRQEVESFAALFPLPGL 467

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 463

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score =  486 bits (1251), Expect = e-171
 Identities = 271/450 (60%), Positives = 338/450 (75%), Gaps = 12/450 (2%)

Query: 6   PEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYID 65
           PE+ E++ +EK+RQ + LELIASENF SRA +EA+GSCL NKYSEG PGKRYYGG E +D
Sbjct: 13  PEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVD 72

Query: 66  ELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLS 125
           E+E LCQ+RAL AF+LD  +WGVNVQP SGSPAN  VYTA+L+PHDRIMGLDLP GGHL+
Sbjct: 73  EIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLT 132

Query: 126 HGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFD 185
           HG+M+  +R+S TSI+FESMPY+L+  TGL+DY+ L  TA LFRP+LIIAG SAY R  D
Sbjct: 133 HGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYARLID 192

Query: 186 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFK 245
           Y RMR++ D V A L+ DMAHISGLVAA V+  PFK+ D+VTTTTHK+LRG R G+IF++
Sbjct: 193 YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIFYR 252

Query: 246 K-----DPVLGVEL----ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK 296
           K     DP  G E+    E  IN AVFP LQGGPHNH I  +AV LK A +P F+ Y  +
Sbjct: 253 KGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQ 312

Query: 297 VVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVP 356
           V+ N RA+A  L+E GY LVSGG+DNHLVLVDLRP G+DGAR E++L++ SIT NKN+ P
Sbjct: 313 VLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCP 372

Query: 357 GDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNF 416
           GD+SA+ PGG+R+G+PA+T+R F E +F  + DFI EGV I LE K     +KLQDF +F
Sbjct: 373 GDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKT--AKLQDFKSF 430

Query: 417 VTSPNFSLMNNVADLRGRVEALTTQFPIPG 446
           +   +      +A+LR RVE     FP+PG
Sbjct: 431 LLK-DSETSQRLANLRQRVEQFARAFPMPG 459

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} Length = 416

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

 Score =  450 bits (1158), Expect = e-157
 Identities = 198/440 (45%), Positives = 267/440 (60%), Gaps = 38/440 (8%)

Query: 6   PEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYID 65
            E+ + + +EK RQ + +ELIASEN+TS  VM+A GS LTNKY+EG PGKRYYGG EY+D
Sbjct: 12  AELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVD 71

Query: 66  ELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLS 125
            +E L   RA   F         NVQP SGS ANF VYTA+L+P D ++G++L HGGHL+
Sbjct: 72  IVEQLAIDRAKELFGA----DYANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLT 127

Query: 126 HGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFD 185
           HG       V+ +   +  +PY +D  TG +DY  LEK A   +PK+II G SAY    D
Sbjct: 128 HG-----SPVNFSGKLYNIVPYGIDA-TGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVD 181

Query: 186 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFK 245
           + +MR+IAD++GA L +DMAH++GLVAA V  +P  +  VVTTTTHK+L GPRGG+I  K
Sbjct: 182 WAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAK 241

Query: 246 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA 305
                  +    +N+AVFPG QGGP  H I G AV LK A  PEFK YQ +V  N +A+ 
Sbjct: 242 GGSEELYK---KLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMV 298

Query: 306 SRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVP 364
              +E GYK+VSGG+DNHL LVDL    + G   +  L  A+IT+NKNSVP D KS  V 
Sbjct: 299 EVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVT 358

Query: 365 GGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSL 424
            GIR+G+PA+T RGF E E   +A ++ + ++   +   +                    
Sbjct: 359 SGIRVGTPAITRRGFKEAEAKELAGWMCDVLDSINDEAVI-------------------- 398

Query: 425 MNNVADLRGRVEALTTQFPI 444
                 ++G+V  +  ++P+
Sbjct: 399 ----ERIKGKVLDICARYPV 414

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 405

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  443 bits (1140), Expect = e-155
 Identities = 201/435 (46%), Positives = 263/435 (60%), Gaps = 40/435 (9%)

Query: 6   PEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYID 65
           P+V   I +E++RQ   +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG EY+D
Sbjct: 9   PQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVD 68

Query: 66  ELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLS 125
            +E L ++RA   F         NVQP SG+ AN  VY  +L+  D ++G++L HGGHL+
Sbjct: 69  IVEELARERAKQLFGA----EHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLT 124

Query: 126 HGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFD 185
           HG       V+ + + +  + Y +D  T ++DYD + + A L RPKLI+A ASAYPR  D
Sbjct: 125 HGSP-----VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRIID 179

Query: 186 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFK 245
           + + R+IAD VGA LM+DMAHI+GLVAA +  +P  Y   VTTTTHK+LRGPRGGMI  +
Sbjct: 180 FAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQ 239

Query: 246 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA 305
           +           I+ A+FPG+QGGP  H I   AV    A   +FK Y  +VV N + LA
Sbjct: 240 EQ------FAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLA 293

Query: 306 SRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVP 364
           S L   G+ LVSGG+DNHL+LVDLRP  + G   EK+LD   IT+NKN++P D +S  V 
Sbjct: 294 SALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVT 353

Query: 365 GGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSL 424
            GIRIG+ A+TTRGF  +E   IA  I   ++                        N   
Sbjct: 354 SGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLK------------------------NVGS 389

Query: 425 MNNVADLRGRVEALT 439
              + + R RV ALT
Sbjct: 390 EQALEEARQRVAALT 404

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

 Score =  167 bits (424), Expect = 2e-47
 Identities = 61/461 (13%), Positives = 125/461 (27%), Gaps = 82/461 (17%)

Query: 10  EIITKEKERQFKSLELIASEN---FTSRAVM------EAVGSCLTNKYSEGLPGKRYYGG 60
           E + +      +   + +  N     S  V          G+   +  +  + G   + G
Sbjct: 13  EPVKRTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMMRGDEAFSG 72

Query: 61  NEYIDELETLCQKRALAAFNLDENKWGVN--VQPLSGSPANFEVYTAILKPHDRIMGLDL 118
           +     L       ++         +G    +    G  A       ++K  ++  GLD 
Sbjct: 73  SRSYYALA-----ESVKNI------FGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDR 121

Query: 119 PHGGHLSHGFMTPKR---RVSGTS-----IYFESMPYRLDESTGLVDYDMLEKTAILFRP 170
                 S+ F    +   +++G +     I          +  G  D + LE+      P
Sbjct: 122 SKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGP 181

Query: 171 KLII---------AGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA-------- 213
             +          +         +   M  IA      ++MD A  +             
Sbjct: 182 NNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEY 241

Query: 214 ------SVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQ 267
                  +  + +KY D++  +  K    P GG++  K D    V         +    +
Sbjct: 242 KDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVY---TECRTLCVVQE 298

Query: 268 GGPHNHTIGGLAVCLKHAQSPEF--KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLV 325
           G P    + G A+        +     +    ++  + L   L E    +V   +  H  
Sbjct: 299 GFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEE--IGVVCQQAGGHAA 356

Query: 326 LVDLRPMGID--------GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSP----- 372
            VD   +            A   ++  +A I   +            G            
Sbjct: 357 FVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRL 416

Query: 373 AMTTRGFSEKEFVAIADFIHE---------GVEITLEAKKL 404
            +    +++     I +             G+  T E K L
Sbjct: 417 TIPRATYTQTHMDFIIEAFKHVKENAANIKGLTFTYEPKVL 457

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

 Score =  146 bits (368), Expect = 1e-39
 Identities = 58/421 (13%), Positives = 118/421 (28%), Gaps = 74/421 (17%)

Query: 40  VGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN 99
             +   ++++  + G   Y G+    +L+     +A   FN D       +    G  A 
Sbjct: 53  TNAMSDHQWAAMITGDEAYAGSRNYYDLK----DKAKELFNYDYI-----IPAHQGRGAE 103

Query: 100 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESM------PYRLDEST 153
             ++  +LK   +      P      H   T              +          D+  
Sbjct: 104 NILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWK 163

Query: 154 GLVDYDMLEKTA---------ILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDM 204
           G  D   L++            +       +         +   + +IA   G  ++MD 
Sbjct: 164 GDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDS 223

Query: 205 AHISGLVA--------------ASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVL 250
           A                       V+ D +KY D +T +  K      GG++  + +  +
Sbjct: 224 ARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEI 283

Query: 251 GVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPE--FKVYQNKVVSNCRALASRL 308
                  +       ++G      + G  +        E   + Y +  +   + L  RL
Sbjct: 284 FT-----LARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRL 338

Query: 309 VELGYKLVSGGSDNHLVLVDLRPMGID--------GARVEKILDMASITLNKNSVP---- 356
            E G  +       H V VD + +            A +  +   + +   +        
Sbjct: 339 REAGIPIQYPT-GGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGR 397

Query: 357 ----GDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE---------GVEITLEAKK 403
               G++       +R+       R ++      IAD +           G+E   E   
Sbjct: 398 DPATGEQKHADMEFMRLTIA---RRVYTNDHMDYIADALIGLKEKFATLKGLEFEYEPPV 454

Query: 404 L 404
           L
Sbjct: 455 L 455

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} Length = 462

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

 Score =  139 bits (350), Expect = 3e-37
 Identities = 55/417 (13%), Positives = 100/417 (23%), Gaps = 53/417 (12%)

Query: 20  FKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGN-------EYIDELETLC- 71
           FKSL+   S            G     K+  G     ++G              L  L  
Sbjct: 4   FKSLKEYVSRYLIQFDCPGHQGGQYYRKHPAGREFYDFFGETVFRADLCNADVALGDLLI 63

Query: 72  --------QKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGH 123
                   +K A   +N D+            S AN  V +A++   D ++     H   
Sbjct: 64  HEGPAVAAEKHAARVYNADK----TYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSV 119

Query: 124 LSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPK----------LI 173
            +        R            +         D   + + A    P+           +
Sbjct: 120 YNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAV 179

Query: 174 IAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA----------DPFKYC 223
           I   +     ++   + +    +   +  D A +       ++            P    
Sbjct: 180 IQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPG 239

Query: 224 DVVTTTTHKSLRGPRGGMIFFKKD----PVLGVELESAINNAVFPGLQGGPHNHTIGGLA 279
            +V  + HK   G        KKD      L        NN+    +   P       L 
Sbjct: 240 IIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALD 299

Query: 280 VCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-------GYKLVSGGSDNHLVLVDLRPM 332
           V     +    +   + ++        +L++           +V+G         D+   
Sbjct: 300 VNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANN 359

Query: 333 GIDGARVEKILDMASITLNKNSVPGD--KSALVPGGIRIGSPAMTTRGFSEKEFVAI 387
                  +     A      N    D  K  L   GI   +      G         
Sbjct: 360 IDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANY 416

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

 Score =  127 bits (320), Expect = 5e-33
 Identities = 58/407 (14%), Positives = 105/407 (25%), Gaps = 71/407 (17%)

Query: 48  YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVN--VQPLSGSPANFEVYTA 105
           ++  + G   Y G+E    LE     + +         +G    V    G  A   +   
Sbjct: 61  WAGMMIGDEAYAGSENFYHLE-----KTVKEL------FGFKHIVPTHQGRGAENLLSQL 109

Query: 106 ILKPHDRIMG---LDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLE 162
            +KP   + G             +G                          G +D + L 
Sbjct: 110 AIKPGQYVAGNMYFTTTRFHQEKNGA-----TFVDIVRDEAHDASLNLPFKGDIDLNKLA 164

Query: 163 K---------TAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHIS----- 208
                      A +     +           +   + ++A   G  +  D          
Sbjct: 165 TLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYF 224

Query: 209 ---------GLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAIN 259
                     +    +V + F Y D  T +  K      GG +    D  +    +  + 
Sbjct: 225 IKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLCM-NDEEMFSAAKELVV 283

Query: 260 NAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGG 319
                   GG     +  +A+ L+ A   E   Y    V   R L  +L E G  +V   
Sbjct: 284 VYEGMPSYGGLAGRDMEAMAIGLREAMQYE---YIEHRVKQVRYLGDKLREAGVPIVEPT 340

Query: 320 SDNHLVLVDLRPM--------GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS 371
              H V +D R              +    I     +   +  +     +   G      
Sbjct: 341 -GGHAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPK 399

Query: 372 P-----AMTTRGFSEKEFVAIADFIHE---------GVEITLEAKKL 404
                  +  R ++      +AD I +         G+    E K+L
Sbjct: 400 LETVRLTIPRRVYTYAHMDVVADGIIKLYQHKEDIRGLTFVYEPKQL 446

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

 Score = 59.0 bits (141), Expect = 4e-10
 Identities = 58/357 (16%), Positives = 110/357 (30%), Gaps = 42/357 (11%)

Query: 27  ASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDEN 84
            S+  T  +  + +A+        ++   G   YG +  I+ELE     R  A       
Sbjct: 5   RSDTVTKPTEEMRKAM--------AQAEVGDDVYGEDPTINELE-----RLAAET---FG 48

Query: 85  KWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFES 144
           K      P SG+  N     A  +  D ++     H      G M     V    +  ++
Sbjct: 49  KEAALFVP-SGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKN 107

Query: 145 MPYRLDESTGLVDYDMLE--KTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMM 202
                D+    +    +   +T+++                 +   +  IA   G  + +
Sbjct: 108 GAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHI 167

Query: 203 DMAHISGLVAASVV--ADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINN 260
           D A I     AS V   +   Y D V     K L  P G ++   +D             
Sbjct: 168 DGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRD----------FIE 217

Query: 261 AVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS 320
                 +         G+          +      +   N R LA +L E+GY +     
Sbjct: 218 RARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSVNPEDV 277

Query: 321 DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTR 377
             ++V++    + ++     + L  + +  N         A+    IR+ +    +R
Sbjct: 278 KTNMVILRTDNLKVNAHGFIEALRNSGVLAN---------AVSDTEIRLVTHKDVSR 325

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 49.9 bits (118), Expect = 3e-07
 Identities = 47/303 (15%), Positives = 91/303 (30%), Gaps = 31/303 (10%)

Query: 60  GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 119
           G   +  L     +       L+ +       P+S   +     +A  K +   + +   
Sbjct: 107 GASIMYALTNKILESFFKQLGLNVHAIAT---PISTGMSISLCLSAARKKYGSNVVI--- 160

Query: 120 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEK-----TAILFRPKLII 174
              + SH          G ++    +   LD     V  + +E        +  RP ++ 
Sbjct: 161 -YPYASHKSPIKAVSFVGMNMRL--VETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLS 217

Query: 175 AGASAYPRD-FDYPRMRQIADAVGALLMMDMAHISGLVAAS--VVADPFKYCDVVTTTTH 231
                 PR+  D   + +I +      +++ A+          +        D V +++ 
Sbjct: 218 TLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSD 277

Query: 232 KSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 291
           K+L  P GG + +  D     E    I+ +        P  +T+  L            K
Sbjct: 278 KNLLTPIGGGLVYSTDA----EFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVK 333

Query: 292 VYQNKVVSNCRALASRLVELGYKL----------VSGGSDNHLVLVDLRPMGIDGARVEK 341
             +N        L     + G K           +S  SD   +   L  + + G R  K
Sbjct: 334 NQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVTGPRGIK 393

Query: 342 ILD 344
             D
Sbjct: 394 KTD 396

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 364

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 49.0 bits (115), Expect = 6e-07
 Identities = 56/385 (14%), Positives = 120/385 (31%), Gaps = 31/385 (8%)

Query: 19  QFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELET--LCQK--R 74
            F +++ + +    +    +A+      ++ +G     +      +DE++T  +      
Sbjct: 1   DFINIDPLQTGGKLTEEARQAL-----LEWGDGYSVCDFCTTG-RLDEIKTPPIHDFIHN 54

Query: 75  ALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRR 134
            L  F          V       A F V  ++ K    ++  +  H              
Sbjct: 55  QLPKF---LGCDVARVTN-GAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNI 110

Query: 135 VSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIAD 194
                  +       +     ++        +L    LI      Y    D  ++ ++  
Sbjct: 111 ALVPKTDYPDYAITPENFAQTIEETKKRGEVVLA---LITYPDGNYGNLPDVKKIAKVCS 167

Query: 195 AVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVEL 254
                L+++ A+  G +  S+        D +  + HKS+       +   K+    + L
Sbjct: 168 EYDVPLLVNGAYAIGRMPVSL---KEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVL 224

Query: 255 ESAIN--NAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG 312
             +    N     L       TI  L     H +  E     ++ V   R  A+ + +LG
Sbjct: 225 RRSEKYKNKEVELLGCTARGATIITLMASFPHVR--ERIKRWDEEVEKARRFAAEMEKLG 282

Query: 313 YKLVSGGSDNHLVLVDLRPMGID-GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS 371
            K +     NH ++     +  +   + +         L    + G K    PG  R   
Sbjct: 283 IKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHGIK----PGLTRYFK 338

Query: 372 PAMTTRGFSEKEFVAIADFIHEGVE 396
             ++T G S++E   + +   E +E
Sbjct: 339 --LSTYGLSDEEVDYVLNAFKEIIE 361

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	447
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	100.0
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	100.0
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	100.0
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	100.0
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	100.0
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	100.0
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.97
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.97
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.97
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.96
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.96
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	99.96
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.96
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	99.96
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	99.95
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.95
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.95
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.95
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	99.95
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.95
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.95
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.94
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	99.94
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.94
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.94
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	99.93
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.93
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.93
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.93
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	99.92
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.92
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	99.92
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.91
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	99.91
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	99.91
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	99.91
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.91
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.9
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.9
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.9
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.9
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.9
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	99.9
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.89
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	99.89
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.89
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.89
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.89
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	99.89
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.87
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.87
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.86
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.86
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.85
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.84
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.84
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	99.84
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.83
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	99.83
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.82
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.81
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.8
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	99.79
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	99.79
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.78
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	99.78
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	99.78
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	99.77
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.77
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.76
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.76
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.73
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	99.72
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.72
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	99.71
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	99.69
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	99.65
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.57
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	99.55
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	99.53
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.47
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	99.46
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.42
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	99.39
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	99.28
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	99.2

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=2.5e-96  Score=711.55  Aligned_cols=446  Identities=61%  Similarity=1.019  Sum_probs=418.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC
Q 013217            1 MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN   80 (447)
Q Consensus         1 ~~~~~~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g   80 (447)
                      |++.||||+++|++|.+||+++|+||||||++|+.|++++++.++|+|++||||.|||+|++++|++|..|+++++++||
T Consensus        12 l~~~D~ei~~~i~~e~~rq~~~l~LIaSEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~   91 (470)
T d1rv3a_          12 LKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYG   91 (470)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHSSEECCTTCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HhhhCHHHHHHHHHHHHHHHcCceEecCCCcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhC
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHH
Q 013217           81 LDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDM  160 (447)
Q Consensus        81 ~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~  160 (447)
                      ++++.|.+|||+.||+.||.+++.++++|||+|+.+++.+|||++|++......++..+..++.++|+++++++.||+|+
T Consensus        92 ~~~~~~~anVqp~SGs~An~av~~all~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~~~IDyd~  171 (470)
T d1rv3a_          92 LDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDR  171 (470)
T ss_dssp             CCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHH
T ss_pred             CChhhccccccccCCccHHHHHHHHhcCCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEecccCcccHHH
Confidence            99888889999999999999999999999999999999999999999877666778888899999999999999999999


Q ss_pred             HHHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCc
Q 013217          161 LEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG  240 (447)
Q Consensus       161 l~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG  240 (447)
                      +++.++.++||+|+++.|+||+.+|++++++||++.|++|++|++|.+|+++.+.+++|++++|++++||||+|+|||||
T Consensus       172 l~~~a~~~kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~~aDvvt~tTHKtlrGPrgG  251 (470)
T d1rv3a_         172 LEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAG  251 (470)
T ss_dssp             HHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGGGCCCSCE
T ss_pred             HHHHHHhhCcceEeechhhccccCCHHHHHHHHhccCCeEEecchhhhhhccccccCChhheeeeeeeehhhhccCCcce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeecCCc---------chhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC
Q 013217          241 MIFFKKDPV---------LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL  311 (447)
Q Consensus       241 ~i~~~~~~~---------~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  311 (447)
                      +|+++++.+         ..+++.+++++++||+++|+|+++.+||++++++++.++.|++|.+++.+|++.|++.|.+.
T Consensus       252 iI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~  331 (470)
T d1rv3a_         252 MIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL  331 (470)
T ss_dssp             EEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999987421         12358899999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217          312 GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  391 (447)
Q Consensus       312 g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i  391 (447)
                      |+++++++|++|++++|+++.++++.++++.|++.||.+|++++|++.+++.++||||||+++|+|||+++||++++++|
T Consensus       332 G~~v~~ggTdnHlvlvdl~~~g~~g~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~alTtrG~~e~dm~~iA~~I  411 (470)
T d1rv3a_         332 GYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFI  411 (470)
T ss_dssp             TCEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHH
T ss_pred             CceeccCCCCCceEEEeecccCCcHHHHHHHHHHcCcEECCCcCCCCCCCCCCCeeEecCHHHHhCCCCHHHHHHHHHHH
Confidence            99999999999999999998899999999999999999999999999888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccc-cchhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCCC
Q 013217          392 HEGVEITLEAKKLVQGS-KLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV  447 (447)
Q Consensus       392 ~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~~~  447 (447)
                      .++++....++++++.+ .+++|.+.+..+. ...+.++++|++|.+||++||+|||
T Consensus       412 ~~~l~~~~~~~~~~g~~~~~~ef~~~~~~~~-~~~~~i~~lr~eV~~l~~~FPlPg~  467 (470)
T d1rv3a_         412 HRGIELTVQIQDDTGPRATLKEFKEKLAGDE-KHQRAVRALRQEVESFAALFPLPGL  467 (470)
T ss_dssp             HHHHHHHHHHHHTTCSSCCHHHHHHHHHSCH-HHHHHHHHHHHHHHHHHTTSCCCSS
T ss_pred             HHHHHHHHhhhhcccchhhHHHHHHHhhccc-ccHHHHHHHHHHHHHHHHcCCCCCC
Confidence            99999999998877333 4678888776443 1124689999999999999999986

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=1.6e-96  Score=710.44  Aligned_cols=444  Identities=60%  Similarity=1.028  Sum_probs=376.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC
Q 013217            1 MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN   80 (447)
Q Consensus         1 ~~~~~~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g   80 (447)
                      |++.||||+++|++|.+||+++|+||||||++|+.|++++++.++|+|++||||.|||+|++++|++|..|+++++++|+
T Consensus         8 L~~~D~ei~~~i~~e~~rq~~~l~LiaSEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~   87 (463)
T d2a7va1           8 LSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFD   87 (463)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTT
T ss_pred             hhhhCHHHHHHHHHHHHHHhcCeeEeccCCcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhC
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHH
Q 013217           81 LDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDM  160 (447)
Q Consensus        81 ~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~  160 (447)
                      +++++|++|||+.||+.||++++.+|++|||+|+.+++.+|||++|++......++++|..++.++|+++++++.||+|+
T Consensus        88 ~~~a~w~vNVqp~SGs~An~av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~IDyd~  167 (463)
T d2a7va1          88 LDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQ  167 (463)
T ss_dssp             CCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC-------------------------------CCBCTTTCSBCHHH
T ss_pred             CCchhccCCccccccHHHHHHHHHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcCcHHH
Confidence            99999999999999999999999999999999999999999999999866555678889999999999998899999999


Q ss_pred             HHHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCc
Q 013217          161 LEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG  240 (447)
Q Consensus       161 l~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG  240 (447)
                      +++++.+++||+|+++.|+||+.+|++++++||++.|+++++|++|.+|+++.+.+++|++++|++++||||+|+|||||
T Consensus       168 ~~~~a~~~kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~~aDvvt~tTHKTlrGPrgG  247 (463)
T d2a7va1         168 LALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSG  247 (463)
T ss_dssp             HHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCSCSCE
T ss_pred             HHHHHhhcCCceEEecccccccccCHHHHHHHhhcccceEEechhhhhHHhhhhhhcChhhhhhhhhchhhhhhcCCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeecCCc---------chhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC
Q 013217          241 MIFFKKDPV---------LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL  311 (447)
Q Consensus       241 ~i~~~~~~~---------~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  311 (447)
                      +|+++++..         ...++.++++.++||+.+|+|+++.+||+++|++++.+++|++|.+++++|++.|++.|.+.
T Consensus       248 iIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~  327 (463)
T d2a7va1         248 LIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER  327 (463)
T ss_dssp             EEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhC
Confidence            999987411         11257889999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217          312 GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  391 (447)
Q Consensus       312 g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i  391 (447)
                      |+++++++|++|++++|+++.++++..+++.|++.||.+|++.+|+|.+++.++||||||+++|+|||+++||++++++|
T Consensus       328 G~~vv~ggTdnHlvlvdl~~~~~~G~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~a~TtrG~~e~dm~~iA~~I  407 (463)
T d2a7va1         328 GYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFI  407 (463)
T ss_dssp             TCEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHH
T ss_pred             CCeeecCCCCCceeeeeccccCCCHHHHHHHHHhccCccCCccCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHH
Confidence            99999999999999999998899999999999999999999999999888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccccchhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCCC
Q 013217          392 HEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV  447 (447)
Q Consensus       392 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~~~  447 (447)
                      .+++....++++++ + ++++|...+..+. +..+++++||++|.+||++||+|+|
T Consensus       408 ~~~l~~~~~~~~~~-~-~~~df~~~~~~~~-~~~~~i~~lr~~V~~l~~~fP~pg~  460 (463)
T d2a7va1         408 DEGVNIGLEVKSKT-A-KLQDFKSFLLKDS-ETSQRLANLRQRVEQFARAFPMPGF  460 (463)
T ss_dssp             HHHHHHHHHHHHHC-C-SHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHTTSCCSSC
T ss_pred             HHHHHHhhhhhhhh-h-hhHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHhCCCCCC
Confidence            99999999988876 4 5678876553222 1124689999999999999999986

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.1e-92  Score=672.23  Aligned_cols=409  Identities=49%  Similarity=0.795  Sum_probs=387.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC
Q 013217            1 MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN   80 (447)
Q Consensus         1 ~~~~~~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g   80 (447)
                      |++.||||+++|++|.+||+++|+||||||++||.|++++++.++|+|++||||.|||+|++++|++|..|+++++++||
T Consensus         7 l~~~D~ei~~~i~~e~~rq~~~i~LiaSEN~~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~   86 (416)
T d1dfoa_           7 IADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFG   86 (416)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred             hhhcCHHHHHHHHHHHHHHHcCceEecCcccCCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhC
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHH
Q 013217           81 LDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDM  160 (447)
Q Consensus        81 ~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~  160 (447)
                      ++.    +|||++||+.||.+++.++++|||+|+.+++.+|||++|++     .++..|..+++++|+++ .++.||+|+
T Consensus        87 a~~----anVqp~SGs~AN~av~~All~pGD~Il~l~l~~GGHlshg~-----~~~~~g~~~~~~~y~~d-~~~~IDyd~  156 (416)
T d1dfoa_          87 ADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGS-----PVNFSGKLYNIVPYGID-ATGHIDYAD  156 (416)
T ss_dssp             CSE----EECCCSSHHHHHHHHHHHHCCTTCEEEEECTTTTCCGGGTC-----TTSHHHHHSEEEEECBC-SSSSBCHHH
T ss_pred             CCc----ceeecccCccHHHHHHHHhcCCCCeeeeccccccccccccc-----cccccCceEEEEecccC-CccCccHHH
Confidence            976    79999999999999999999999999999999999999996     56788999999999998 477899999


Q ss_pred             HHHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCc
Q 013217          161 LEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG  240 (447)
Q Consensus       161 l~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG  240 (447)
                      +++++.+++||+|+++.|.||+.+|++++++||+++|+++++|++|.+|+++.+.+++|++++|++++|+||+|+|||||
T Consensus       157 l~~~a~~~kPklIi~G~S~y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~aDvvt~tThKtlrGPrgg  236 (416)
T d1dfoa_         157 LEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGG  236 (416)
T ss_dssp             HHHHHHHHCCSEEEEECSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTTSSEEEEESSSTTCCCSCE
T ss_pred             HHHHHHHhccceEEecccccccccCHHHHHHHHHhcCceEEcchhhhhcceeccccCCcccccceeeeehhhcccCCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCC
Q 013217          241 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS  320 (447)
Q Consensus       241 ~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~  320 (447)
                      +|+++++.+   ++.+++++++||+.+|+|+++.+||++++++++.+++|++|.+++.+|++.|++.|.+.|+++++++|
T Consensus       237 iI~~~~~~~---~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~G~~iv~ggT  313 (416)
T d1dfoa_         237 LILAKGGSE---ELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGT  313 (416)
T ss_dssp             EEEESSCCH---HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSC
T ss_pred             EEEeccchH---hHHHHHHhhhCcccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCCC
Confidence            999985322   78889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC-CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHHH
Q 013217          321 DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITL  399 (447)
Q Consensus       321 ~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~-~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~  399 (447)
                      ++|++++|+++.++++.++++.|++.||.+|++++|++. +|+.++||||||+++|+|||+++||++++++|.++++.. 
T Consensus       314 dnHlvlvdl~~~~~~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~~~-  392 (416)
T d1dfoa_         314 DNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDSI-  392 (416)
T ss_dssp             SSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT-
T ss_pred             CCceeEEEecccCCCHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHHcC-
Confidence            999999999988999999999999999999999999986 788899999999999999999999999999999999742 


Q ss_pred             HHHHhhccccchhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCC
Q 013217          400 EAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG  446 (447)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~~  446 (447)
                                        + ++    ..+++||++|.+||++||++.
T Consensus       393 ------------------~-~~----~~~~~ir~~V~~l~~~fPly~  416 (416)
T d1dfoa_         393 ------------------N-DE----AVIERIKGKVLDICARYPVYA  416 (416)
T ss_dssp             ------------------T-CH----HHHHHHHHHHHHHHHHSCSBC
T ss_pred             ------------------C-cH----HHHHHHHHHHHHHHHcCCCCC
Confidence                              1 12    378999999999999999973

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=5.9e-91  Score=660.82  Aligned_cols=401  Identities=50%  Similarity=0.819  Sum_probs=383.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC
Q 013217            1 MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN   80 (447)
Q Consensus         1 ~~~~~~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g   80 (447)
                      |++.||||+++|++|.+||+++|+||||||++||.|++++++.++|+|++||||.|||+|++++|++|..|+++++++||
T Consensus         4 l~~~D~ei~~~i~~e~~rq~~~l~LiaSEN~~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~   83 (405)
T d1kl1a_           4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFG   83 (405)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhCHHHHHHHHHHHHHHHcCceEeccCCcCCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHH
Q 013217           81 LDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDM  160 (447)
Q Consensus        81 ~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~  160 (447)
                      ++.    +|||+.||+.||++++.+|++|||+|+.+++.+|||++|+.     ..+..|..++++.|++|++++.||+|+
T Consensus        84 a~~----anVqp~SGs~An~av~~all~pGD~im~l~l~~GGHlshg~-----~~~~~g~~~~~~~y~~d~~~~~ID~d~  154 (405)
T d1kl1a_          84 AEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGS-----PVNFSGVQYNFVAYGVDPETHVIDYDD  154 (405)
T ss_dssp             CSE----EECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTC-----TTSHHHHHSEEEEECBCTTTCSBCHHH
T ss_pred             CCc----ceeeccCchHHHHHHHHHhcCCCCEEEEeecccccccccCc-----cccccceEEEEEEeccchhcccccHHH
Confidence            976    79999999999999999999999999999999999999995     567788889999999999999999999


Q ss_pred             HHHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCc
Q 013217          161 LEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG  240 (447)
Q Consensus       161 l~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG  240 (447)
                      ++++++.+|||+|+++.|.|++.+|++++++||++.|+++++|++|.+|+++.+.+++|++++|++++|+||+|+|||||
T Consensus       155 l~~~a~~~kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~~aDvvt~tThKtlrGPrgg  234 (405)
T d1kl1a_         155 VREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGG  234 (405)
T ss_dssp             HHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSCE
T ss_pred             HHHHHHhhCcceEEecccccccccChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChhhhhhheeccccccccCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCC
Q 013217          241 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS  320 (447)
Q Consensus       241 ~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~  320 (447)
                      +|++++      ++.+++++++||+.+|+|+++.+||++++|+++.++.|++|.+++.+|++.|++.|.+.|+++++++|
T Consensus       235 ~I~~~~------~~~~~i~~avfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~G~~vv~ggT  308 (405)
T d1kl1a_         235 MILCQE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGGT  308 (405)
T ss_dssp             EEEECH------HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSC
T ss_pred             eEEecc------hhHHHHHhhhCcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCceeecCCC
Confidence            999998      89999999999999999999999999999999988999999999999999999999999999999999


Q ss_pred             CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC-CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHHH
Q 013217          321 DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITL  399 (447)
Q Consensus       321 ~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~-~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~  399 (447)
                      ++|++++|+++.++++.++++.|++.||.+|++.+|++. +|+.++||||||+++|+|||+++||++++++|.++++.. 
T Consensus       309 d~H~vlvdl~~~~~~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~~~-  387 (405)
T d1kl1a_         309 DNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNV-  387 (405)
T ss_dssp             SSSEEEEECGGGTCCHHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCT-
T ss_pred             ccceeeccccccCCcHHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHHhcC-
Confidence            999999999988999999999999999999999999996 788899999999999999999999999999999998742 


Q ss_pred             HHHHhhccccchhhhcccCCCCccchHHHHHHHHHHHHHHh
Q 013217          400 EAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTT  440 (447)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  440 (447)
                                        ++ +    ..++++|++|.+||.
T Consensus       388 ------------------~~-~----~~~~~ir~~V~~L~~  405 (405)
T d1kl1a_         388 ------------------GS-E----QALEEARQRVAALTD  405 (405)
T ss_dssp             ------------------TC-H----HHHHHHHHHHHHHHC
T ss_pred             ------------------Cc-H----HHHHHHHHHHHHhhC
Confidence                              11 2    378899999999994

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.5e-31  Score=262.67  Aligned_cols=342  Identities=17%  Similarity=0.118  Sum_probs=244.1

Q ss_pred             ecCCCCCCHHHHHHHhhhhhccCCCCCCCC-cccCchhHHHHHHHHHHHHHHHHcCCCC-CccceeeecCCcHHHHHHHH
Q 013217           26 IASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDE-NKWGVNVQPLSGSPANFEVY  103 (447)
Q Consensus        26 ~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~-~~~~g~~~~~~le~~~~~~~~~~~g~~~-~~~~~~v~~~sGs~a~~~~~  103 (447)
                      .++.+++|+.|++++..++.+.|  ++|++ .+..+....+.+| .+|+.+++++|+.. +++   +.+.++|+++..++
T Consensus        28 ~a~~~~~p~~v~~~~~~~~~~~~--~n~~~~~~~~~~~~~~~~e-~~R~~ia~~l~~~~~~~i---~~~~~~T~~~~~~~  101 (405)
T d1jf9a_          28 SAASAQKPSQVIDAEAEFYRHGY--AAVHRGIHTLSAQATEKME-NVRKRASLFINARSAEEL---VFVRGTTEGINLVA  101 (405)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHTC--CCCSSCSSHHHHHHHHHHH-HHHHHHHHHTTCSCGGGE---EEESSHHHHHHHHH
T ss_pred             CccccCCCHHHHHHHHHHHHhcc--CCCccchhHHHHHHHHHHH-HHHHHHHHHcCCCCcccc---cccCcHHHHHHHHH
Confidence            46677899999999999888754  45543 2333444445555 67899999999764 443   22345567877666


Q ss_pred             HH----hcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCC
Q 013217          104 TA----ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA  179 (447)
Q Consensus       104 ~a----l~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~  179 (447)
                      .+    .+++||+|++.+.+|++...++...    ....|.  ++..++++ .++.+|++.+++++++ +|++|+++..+
T Consensus       102 ~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~----a~~~g~--~v~~~~~~-~~g~~~~~~~~~~i~~-~t~lv~~~~v~  173 (405)
T d1jf9a_         102 NSWGNSNVRAGDNIIISQMEHHANIVPWQML----CARVGA--ELRVIPLN-PDGTLQLETLPTLFDE-KTRLLAITHVS  173 (405)
T ss_dssp             HHHHHHHCCTTCEEEEETTCCGGGTHHHHHH----HHHHTC--EEEEECBC-TTSCBCGGGHHHHCCT-TEEEEEEESBC
T ss_pred             hcccccccCCCCEEEEEeCcccchHHHHHHH----HHHcCc--EEEEECCC-CCCcCCHHHHHHhccC-CcEEEEEecCC
Confidence            55    3689999999999998876543211    122343  55555566 4678999999999988 99999998433


Q ss_pred             C-CC-CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHH
Q 013217          180 Y-PR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES  256 (447)
Q Consensus       180 ~-~~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~  256 (447)
                      + ++ ..|+++|+++|+++|+++++|++|+.|.++.++...   ++|++++|+|||+ ||+| |++++++      +..+
T Consensus       174 ~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~~~id~~~~---~~D~~~~s~hK~~-Gp~G~g~l~v~~------~~~~  243 (405)
T d1jf9a_         174 NVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQAL---DCDFYVFSGHKLY-GPTGIGILYVKE------ALLQ  243 (405)
T ss_dssp             TTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH---TCSEEEEEGGGTT-SCSSCEEEEECH------HHHT
T ss_pred             CcccccCchHHhhhHHHHcCCeeecccceeccccccchhhc---CCceeeccccccc-cCCCceeeeech------hhhc
Confidence            3 34 899999999999999999999999999876554433   4899999999995 8998 9999987      4444


Q ss_pred             HhhhccC---------------------CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEe
Q 013217          257 AINNAVF---------------------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKL  315 (447)
Q Consensus       257 ~i~~~~~---------------------~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~  315 (447)
                      .+.....                     ....|+++...++++..|++.+...+.+...++.....+.+.+.+...+...
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~l~~~~~~~  323 (405)
T d1jf9a_         244 EMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLT  323 (405)
T ss_dssp             TCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEE
T ss_pred             ccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhhhhcCCccc
Confidence            3321100                     0125899999999999999987766777777777777777777777765544


Q ss_pred             eeCCC-CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC---CCCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217          316 VSGGS-DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK---SALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  391 (447)
Q Consensus       316 ~~~~~-~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~---~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i  391 (447)
                      ..+.. ....+.+.+  .+.++.++...|.++||.++.++.....   ....++.+|+|++.+||    ++|+++++++|
T Consensus       324 ~~~~~~r~~ivsf~~--~~~~~~~~~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt----~eDid~l~~~l  397 (405)
T d1jf9a_         324 LYGPQNRLGVIAFNL--GKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNT----HEEVDRLVTGL  397 (405)
T ss_dssp             EESCTTCCSEEEEEE--TTCCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCC----HHHHHHHHHHH
T ss_pred             ccCCcCcCcEEEEEc--CCCCHHHHHHHHHHCCcEEEccchhhhhHHHhcCCCCEEEEECCCCCC----HHHHHHHHHHH
Confidence            43322 223333333  4567888999999999998753211000   01124679999999999    99999999999


Q ss_pred             HHHHHH
Q 013217          392 HEGVEI  397 (447)
Q Consensus       392 ~~~l~~  397 (447)
                      +++++.
T Consensus       398 ~~i~r~  403 (405)
T d1jf9a_         398 QRIHRL  403 (405)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            988774

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=100.00  E-value=3.1e-31  Score=260.68  Aligned_cols=344  Identities=17%  Similarity=0.122  Sum_probs=245.6

Q ss_pred             ecCCCCCCHHHHHHHhhhhhccCCCCCCCC-cccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCc-HHHHHHHH
Q 013217           26 IASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPANFEVY  103 (447)
Q Consensus        26 ~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~-~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sG-s~a~~~~~  103 (447)
                      .++.+++|+.|++++.+++.+.|  ++|++ .+..+....+.+| .+|+.+++++|++.++.   +..+++ +.++..++
T Consensus        28 ~a~~~~~p~~v~~~~~~~~~~~~--~n~~s~~~~~~~~~~~~~e-~aR~~ia~llga~~~~~---i~~~~~tt~~~n~~~  101 (408)
T d1t3ia_          28 NAATSQKPRAVLEKLMHYYENDN--ANVHRGAHQLSVRATDAYE-AVRNKVAKFINARSPRE---IVYTRNATEAINLVA  101 (408)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHTC--CCC--CCSHHHHHHHHHHH-HHHHHHHHHTTCSCGGG---EEEESSHHHHHHHHH
T ss_pred             CccccCCCHHHHHHHHHHHHhcC--CCCCchhhHHHHHHHHHHH-HHHHHHHHHhCCCCccc---EEeecchHHHHHHHH
Confidence            46777899999999999888765  45543 2334445456665 57899999999985443   222444 46766655


Q ss_pred             HH----hcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCC-
Q 013217          104 TA----ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS-  178 (447)
Q Consensus       104 ~a----l~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~-  178 (447)
                      .+    -+++||+|++.+.+|++....+..    .....|.  .+..++.+ .++..|.+.+++++++ +|++|+++.. 
T Consensus       102 ~~~~~~~~~~g~~il~s~~e~~s~~~~~~~----~~~~~g~--~v~~~~~~-~~~~~~~~~l~~~~~~-~t~lv~i~~~~  173 (408)
T d1t3ia_         102 YSWGMNNLKAGDEIITTVMEHHSNLVPWQM----VAAKTGA--VLKFVQLD-EQESFDLEHFKTLLSE-KTKLVTVVHIS  173 (408)
T ss_dssp             HHTHHHHCCTTCEEEEETTCCGGGTHHHHH----HHHHHCC--EEEEECBC-TTSSBCHHHHHHHCCT-TEEEEEEESBC
T ss_pred             hhccccccCCCCEEEeecccchhhhhhhhh----hhhccCc--eEeeeecc-ccccccHHHhhhccCC-CceEEEEeccc
Confidence            54    368999999999999887543321    1122343  33344444 4678899999999987 9999999743 


Q ss_pred             CCCC-CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHH
Q 013217          179 AYPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES  256 (447)
Q Consensus       179 ~~~~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~  256 (447)
                      +.++ ..|+++|.++|+++|+++++|++|+.|.++.++...   ++|++++|+||| .||+| |++++++      +...
T Consensus       174 ~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~~id~~~~---~~D~~~~s~hK~-~gp~G~g~l~v~~------~~~~  243 (408)
T d1t3ia_         174 NTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLI---DCDWLVASGHKM-CAPTGIGFLYGKE------EILE  243 (408)
T ss_dssp             TTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH---TCSEEEEEGGGT-TSCTTCEEEEECH------HHHH
T ss_pred             ccccccCcHHHHhhhhhccCceeeeccceeccccccccccc---CCceEEeccccc-cCCCCccccccch------hhhh
Confidence            3334 889999999999999999999999999886654433   489999999998 58888 9999988      5544


Q ss_pred             HhhhccCC--------------------CCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEe
Q 013217          257 AINNAVFP--------------------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKL  315 (447)
Q Consensus       257 ~i~~~~~~--------------------~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  315 (447)
                      ........                    ...|+++...++++..|++.+...+.++..++..+..+++.+.+.+. ++.+
T Consensus       244 ~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~~~~~~~  323 (408)
T d1t3ia_         244 AMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRL  323 (408)
T ss_dssp             HSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEE
T ss_pred             cCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHhhhhccCccccc
Confidence            43221110                    12589999999999999998877777777778888888888888774 5666


Q ss_pred             eeCCC--CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCC---CCCCCCCCeEEEecCccccCCCCHHHHHHHHHH
Q 013217          316 VSGGS--DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPG---DKSALVPGGIRIGSPAMTTRGFSEKEFVAIADF  390 (447)
Q Consensus       316 ~~~~~--~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~---~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~  390 (447)
                      +.+..  ..+..++.+...++++.++...|.++||.++.++...   ...-..++.+|+|++.+||    ++|+++++++
T Consensus       324 ~~~~~~~~~~~~iv~f~~~~~~~~~v~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt----~~did~li~~  399 (408)
T d1t3ia_         324 YGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNT----KEEIDLFLQS  399 (408)
T ss_dssp             ESCCGGGSCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCC----HHHHHHHHHH
T ss_pred             cCCCccccCcceEEEEEeCCCCHHHHHHHHhhCCcEEecCcccccHHHHhhcCCccEEEECCCCCC----HHHHHHHHHH
Confidence            54321  1222233333346788999999999999987642110   0000124579999999999    9999999999


Q ss_pred             HHHHHHH
Q 013217          391 IHEGVEI  397 (447)
Q Consensus       391 i~~~l~~  397 (447)
                      |+++++.
T Consensus       400 L~~~~~~  406 (408)
T d1t3ia_         400 LQATIRF  406 (408)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999874

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.4e-30  Score=254.81  Aligned_cols=342  Identities=15%  Similarity=0.174  Sum_probs=232.0

Q ss_pred             cCCCCCCHHHHHHHhhhhhccCCCCCCCCcccC-chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCc-HHHHHHHHH
Q 013217           27 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG-GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYT  104 (447)
Q Consensus        27 ~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~-g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sG-s~a~~~~~~  104 (447)
                      ++..+.|+.|+++|.+++.+....|+|.+..+. +....+.++ .+|+.+++++|++++++    ..++| |+++..++.
T Consensus         9 aa~~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~-~~R~~iA~~lg~~~~~I----~~~~~~t~~l~~~~~   83 (391)
T d1p3wa_           9 SATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVD-IARNQIADLVGADPREI----VFTSGATESDNLAIK   83 (391)
T ss_dssp             TTCCCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHH-HHHHHHHHHHTCCGGGE----EEESSHHHHHHHHHH
T ss_pred             ccccCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHH-HHHHHHHHHcCCCCCcE----EEECCHHHHHHHHHh
Confidence            566788999999999988765445677654333 333334444 67899999999998754    22555 577776666


Q ss_pred             Hh----cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCC
Q 013217          105 AI----LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY  180 (447)
Q Consensus       105 al----~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~  180 (447)
                      ++    +++||+|++.+++|+++.....     .+...|.  ++..++.+ +++.+|++++++++++ +|++|+++.++|
T Consensus        84 ~~~~~~~~~gd~Vv~~~~~~~s~~~~~~-----~~~~~G~--~v~~v~~~-~~~~~d~~~~~~~i~~-~T~lv~is~~~n  154 (391)
T d1p3wa_          84 GAANFYQKKGKHIITSKTEHKAVLDTCR-----QLEREGF--EVTYLAPQ-RNGIIDLKELEAAMRD-DTILVSIMHVNN  154 (391)
T ss_dssp             HHHHHHGGGCCEEEEETTSCHHHHHHHH-----HHHHTTC--EEEEECCC-TTSCCCHHHHHHHCCT-TEEEEECCSBCT
T ss_pred             hhhhhhcCCCCEEEEeccccchHHHHHH-----HHHHcCC--EEEEeCCC-CCCeEcHHHHHHhCCC-CcEEEEEECCCC
Confidence            54    5899999999999987643221     1122343  55555565 4678999999999987 999999986665


Q ss_pred             CC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHH
Q 013217          181 PR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA  257 (447)
Q Consensus       181 ~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~  257 (447)
                      ++  ..|+++|+++|+++|+++++|++|+.|..+.++...+   +|++++|+|||+ ||.| |+++++++      ....
T Consensus       155 ~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~g~~~~d~~~~~---~D~~~~s~~k~~-g~~g~g~~~~~~~------~~~~  224 (391)
T d1p3wa_         155 EIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLK---VDLMSFSGHKIY-GPKGIGALYVRRK------PRVR  224 (391)
T ss_dssp             TTCCBCCHHHHHHHHHHHTCEEEEECTTTBTTBCCCTTTSC---CSEEEEESTTTT-SCSSCEEEEECBT------TBCC
T ss_pred             CCeeECCHHHHHHHhccCCcEEEEeeccccCCccccchhcc---cccccccccccc-CCCceEEEEEecc------hhcc
Confidence            54  8899999999999999999999999998766655443   899999999996 7777 99999884      2222


Q ss_pred             hhhccCC------CCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeC-CCCCeeEEecCC
Q 013217          258 INNAVFP------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSG-GSDNHLVLVDLR  330 (447)
Q Consensus       258 i~~~~~~------~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~~~v~~~  330 (447)
                      .......      ...|+++....++++.++..... ...+..+++.+.+..+.+.|.+.+...+.. .......++.+.
T Consensus       225 ~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~  303 (391)
T d1p3wa_         225 IEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKE-EMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVS  303 (391)
T ss_dssp             CCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTTTSTTEEECSCTTTSCTTEEEEE
T ss_pred             cCCcccCCccccCcccCcchhhhhhhhhhhhhHHHH-HhhHHHHHHHHHHHHHHHHHHhhcCeeecccccccCceEEEEE
Confidence            2221111      12466677777777777665542 345556777777788888887754433332 111111122222


Q ss_pred             CCCCCHHHHHHHHhhcCeEEccC--CCCCCCCC------------CCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          331 PMGIDGARVEKILDMASITLNKN--SVPGDKSA------------LVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       331 ~~~~~~~~~~~~L~~~gI~v~~~--~~p~~~~~------------~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      ..+.+...+...|.  +|.++.+  +.+....+            ...+.||+|++.+||    ++|+++++++|+++++
T Consensus       304 ~~~~~~~~~~~~l~--~i~v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt----~edid~l~~~l~~~l~  377 (391)
T d1p3wa_         304 FNYVEGESLIMALK--DLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTT----EEEIDYTIELVRKSIG  377 (391)
T ss_dssp             ETTSCHHHHHHHTT--TEECBCCCC------CCCHHHHHHTCCHHHHHTEEEEECCTTCC----HHHHHHHHHHHHHHHH
T ss_pred             eCCCChHHHHHHhC--CCEEEccccccCCccchhHHHHHcCCCccccCCEEEEecCCCCC----HHHHHHHHHHHHHHHH
Confidence            33456777777775  4544432  11111110            012579999999999    9999999999999998


Q ss_pred             HHH
Q 013217          397 ITL  399 (447)
Q Consensus       397 ~~~  399 (447)
                      ..+
T Consensus       378 ~lr  380 (391)
T d1p3wa_         378 RLR  380 (391)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.97  E-value=1.6e-29  Score=246.19  Aligned_cols=333  Identities=16%  Similarity=0.144  Sum_probs=230.9

Q ss_pred             ecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHH
Q 013217           26 IASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA  105 (447)
Q Consensus        26 ~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~a  105 (447)
                      .++..++|..|++++...+...+..|.  .. +........+.+.+|+.+++++|+++++++   .+.+||+++..++.+
T Consensus        13 ~~~~~~~p~~v~ea~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~r~~la~~~~~~~~~i~---~~~g~t~a~~~~~~~   86 (381)
T d1elua_          13 FGGQGILPTVALEAITAMYGYLQENGP--FS-IAANQHIQQLIAQLRQALAETFNVDPNTIT---ITDNVTTGCDIVLWG   86 (381)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHHHHCS--SS-HHHHHHHHHHHHHHHHHHHHHTTSCGGGEE---EESSHHHHHHHHHHH
T ss_pred             CCcccCCCHHHHHHHHHHHHHhhcCCC--cc-chhhHHHHHHHHHHHHHHHHHhCCCcccEE---EECChHHHhhhcchh
Confidence            567778899999999888765322111  11 122333444445678899999999987642   234556999889888


Q ss_pred             h-cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCC-HHHHHHHhhhhCCcEEEEcCCCCC-C
Q 013217          106 I-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVD-YDMLEKTAILFRPKLIIAGASAYP-R  182 (447)
Q Consensus       106 l-~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id-~~~l~~~~~~~~~klii~~~~~~~-~  182 (447)
                      + +++||+|++++.+|++....+..    .....|..+..++  .+......+ .+.+++++++ +|++|+++.++|+ +
T Consensus        87 l~~~~g~~i~~~~~~~~s~~~~~~~----~~~~~g~~~~~v~--~~~~~~~~~~~~~l~~~i~~-~t~~v~i~~~~n~tG  159 (381)
T d1elua_          87 LDWHQGDEILLTDCEHPGIIAIVQA----IAARFGITYRFFP--VAATLNQGDAAAVLANHLGP-KTRLVILSHLLWNTG  159 (381)
T ss_dssp             SCCCTTCEEEEETTCCHHHHHHHHH----HHHHHCCEEEEEC--CGGGSSSSCHHHHHHTTCCT-TEEEEEEESBCTTTC
T ss_pred             hhhcCCceEEEeccccceeeecccc----ccccccccccccc--cccccccchHHHHHHhhhcc-ccccccccccccccc
Confidence            8 78999999999998775432210    1122344334333  432222233 5566666666 8999999866654 3


Q ss_pred             -CCChHHHHHHHHHh----CCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHH
Q 013217          183 -DFDYPRMRQIADAV----GALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES  256 (447)
Q Consensus       183 -~~~~~~i~~ia~~~----g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~  256 (447)
                       ..|+++|.++|+++    |+++++|++|+.|..+.++...   ++|++++|+|||++||.| |+++++++      ..+
T Consensus       160 ~~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~~~~~---~~D~~~~s~~K~~~~p~G~g~l~~~~~------~~~  230 (381)
T d1elua_         160 QVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRL---EVDYYAFTGHKWFAGPAGVGGLYIHGD------CLG  230 (381)
T ss_dssp             CBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTS---CCSEEEEESSSTTCCCTTCEEEEECTT------TGG
T ss_pred             ccchhhHHHHHHhhccccccccccccccccccccccccccc---ccccccccccccccccchhhHHHhhHH------HHH
Confidence             88999999999985    6999999999988765443322   589999999999999999 99999884      333


Q ss_pred             HhhhccCC---------------------CCCCCCcHHHHHHHHHHHHHhcChhH-HHHHHHHHHHHHHHHHHHHH-CCc
Q 013217          257 AINNAVFP---------------------GLQGGPHNHTIGGLAVCLKHAQSPEF-KVYQNKVVSNCRALASRLVE-LGY  313 (447)
Q Consensus       257 ~i~~~~~~---------------------~~~g~p~~~~~aal~~al~~~~~~~~-~~~~~~~~~~~~~l~~~L~~-~g~  313 (447)
                      .+......                     ...|+++...+.++..|++.+...+. +.+.++..++++++.+.|++ .|+
T Consensus       231 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~  310 (381)
T d1elua_         231 EINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHV  310 (381)
T ss_dssp             GCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTE
T ss_pred             hcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhcccccchhhhhhHHHHHHHHHhcCCCe
Confidence            33221110                     12468888888888888887765554 45567888899999999999 588


Q ss_pred             EeeeCC-CCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHH
Q 013217          314 KLVSGG-SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH  392 (447)
Q Consensus       314 ~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~  392 (447)
                      ++++.. ....++.+.+.. ....+.+.+.|+++||.++...        .++++|+|++.+||    ++||+++++.|+
T Consensus       311 ~~~~~~~~~~~~vsf~~~~-~~~~~~i~~~L~~~gi~v~~~~--------~~~~lRis~~~~nt----~edid~ll~~l~  377 (381)
T d1elua_         311 HCLATSAPQAGLVSFTVDS-PLGHRAIVQKLEEQRIYLRTIA--------DPDCIRACCHYITD----EEEINHLLARLA  377 (381)
T ss_dssp             EESCSSCCSSSEEEEEECS-SSCHHHHHHHHHHTTEECEEET--------TTTEEEEECCTTCC----HHHHHHHHHHHT
T ss_pred             EecCCCCccccEEEEEcCC-CCCHHHHHHHHHhCCcEEEecC--------CCCEEEEecCCCCC----HHHHHHHHHHHH
Confidence            887642 223344344322 2356788899999999986421        24689999998888    999999999886


Q ss_pred             H
Q 013217          393 E  393 (447)
Q Consensus       393 ~  393 (447)
                      +
T Consensus       378 e  378 (381)
T d1elua_         378 D  378 (381)
T ss_dssp             T
T ss_pred             h
Confidence            5

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.5e-29  Score=242.99  Aligned_cols=336  Identities=15%  Similarity=0.120  Sum_probs=241.4

Q ss_pred             cCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHH
Q 013217           21 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  100 (447)
Q Consensus        21 ~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~  100 (447)
                      +.+.+.|++..+++.|+++|.....        +.   .+.++.+.++ .+++.+++++|++.+..  .+.+.|||.++.
T Consensus        19 ~~~l~~pGP~~~~~~Vl~am~~~~i--------~H---Rs~~f~~i~~-ea~~~l~~llg~~~~~~--ii~~gsgT~a~~   84 (388)
T d1h0ca_          19 NQLLLGPGPSNLPPRIMAAGGLQMI--------GS---MSKDMYQIMD-EIKEGIQYVFQTRNPLT--LVISGSGHCALE   84 (388)
T ss_dssp             CCEECSSSCCCCCHHHHHHHTCCCC--------CT---TSHHHHHHHH-HHHHHHHHHHTCCCSEE--EEESSCHHHHHH
T ss_pred             cCccccCCCCCCCHHHHHHhCcCCC--------CC---CCHHHHHHHH-HHHHHHHHHhCCCCCcE--EEEcCcHHHHHH
Confidence            5678899999999999999864221        11   2345555444 67899999999985431  244567789999


Q ss_pred             HHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCC
Q 013217          101 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY  180 (447)
Q Consensus       101 ~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~  180 (447)
                      +++.+++.+||++++....+.+.....      .....+  .....+..+ +...+|.+++++.+...++++|.++..++
T Consensus        85 ~~i~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~n  155 (388)
T d1h0ca_          85 AALVNVLEPGDSFLVGANGIWGQRAVD------IGERIG--ARVHPMTKD-PGGHYTLQEVEEGLAQHKPVLLFLTHGES  155 (388)
T ss_dssp             HHHHHHCCSSCCEEECBSSHHHHHHHH------HHHHHC----CBCCBCC-TTCCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred             HHHHHhhccCCceeeecccceeeeecc------cccccc--ccccccccC-CccccchHHHHHHhccCCcceEEEeeeee
Confidence            999999999999998876544431100      111122  233333343 45679999998888777999999885444


Q ss_pred             C-C-CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHH
Q 013217          181 P-R-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA  257 (447)
Q Consensus       181 ~-~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~  257 (447)
                      . + ..|+++|.++|+++|+++++|++|++|.+..++...   ++|++++|+|||++||.| |+++.++      ...+.
T Consensus       156 ~tG~i~pi~~i~~~~~~~g~~~~vD~~qs~g~~~~d~~~~---~~D~~~~s~~K~~~gp~g~~~~~~~~------~~~~~  226 (388)
T d1h0ca_         156 STGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQ---GIDILYSGSQKALNAPPGTSLISFSD------KAKKK  226 (388)
T ss_dssp             TTTEECCCTTHHHHHHTTTCEEEEECTTTTTTSCCCTTTT---TCSEEEEESSSTTCCCTTCEEEEECH------HHHHH
T ss_pred             ccccccCHHHHHHHhhcccccceecccccccccccccccc---ccceecccccccccCCCceEEEeecH------HHHHh
Confidence            3 3 889999999999999999999999999876655444   489999999999999999 7777766      33332


Q ss_pred             hhh----------------------ccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEe
Q 013217          258 INN----------------------AVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKL  315 (447)
Q Consensus       258 i~~----------------------~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~  315 (447)
                      +..                      .......++|+...+.++..+++.+.+.+.+...++..+..+++.+.+.+.|+.+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~g~~~  306 (388)
T d1h0ca_         227 MYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQL  306 (388)
T ss_dssp             HTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCB
T ss_pred             hhhccccccccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhcCccc
Confidence            211                      0112235788888898999899888777788888888999999999998888766


Q ss_pred             eeCCCC---CeeEEecCCCCCCCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEec-CccccCCCCHHHHHHHHHH
Q 013217          316 VSGGSD---NHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGS-PAMTTRGFSEKEFVAIADF  390 (447)
Q Consensus       316 ~~~~~~---~~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~-~~~~~~g~~~~di~~l~~~  390 (447)
                      +.....   ..++.+.+ +.++++.++...| +++||.++.+.-+     ...+.||||+ +.+++    .+|+++++++
T Consensus       307 ~~~~~~~rs~~i~~~~~-p~~~~~~~~~~~L~~~~gI~v~~G~~~-----~~~~~iRis~~g~~~t----~edid~li~a  376 (388)
T d1h0ca_         307 FVKDPALRLPTVTTVAV-PAGYDWRDIVSYVIDHFDIEIMGGLGP-----STGKVLRIGLLGCNAT----RENVDRVTEA  376 (388)
T ss_dssp             SSCSGGGBCTTEEEEEC-CTTCCHHHHHHHHHHHHCEECEECCGG-----GTTTEEEEECCGGGCS----HHHHHHHHHH
T ss_pred             ccCCHHHcCCeEEEEEC-CCCCCHHHHHHHHHhcCCEEEeCCchh-----hcCCEEEEeCCCCCCC----HHHHHHHHHH
Confidence            543211   12333444 3567888887776 5679998754211     2345899994 56677    9999999999


Q ss_pred             HHHHHHHH
Q 013217          391 IHEGVEIT  398 (447)
Q Consensus       391 i~~~l~~~  398 (447)
                      |+++|+..
T Consensus       377 L~~~L~~l  384 (388)
T d1h0ca_         377 LRAALQHC  384 (388)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHHh
Confidence            99999865

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=6.8e-28  Score=234.20  Aligned_cols=339  Identities=19%  Similarity=0.189  Sum_probs=232.8

Q ss_pred             ecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHH
Q 013217           26 IASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA  105 (447)
Q Consensus        26 ~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~a  105 (447)
                      .++.+++|+.|++++.+++.+.|  ++|++.+..+.+..+.++ .+|+++++++|++++++.+   ..++|+++..++.+
T Consensus         7 ~a~~~~~p~~v~ea~~~~~~~~~--~np~~~~~~~~~~~~~~~-~aR~~ia~l~~~~~~~i~~---~~~~T~~l~~~~~~   80 (376)
T d1eg5a_           7 NNATTRVDDRVLEEMIVFYREKY--GNPNSAHGMGIEANLHME-KAREKVAKVLGVSPSEIFF---TSCATESINWILKT   80 (376)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHTCC--CCTTCSSHHHHHHHHHHH-HHHHHHHHHHTSCGGGEEE---ESCHHHHHHHHHHH
T ss_pred             CcccccCCHHHHHHHHHHHHHcC--CCCccccHHHHHHHHHHH-HHHHHHHHHcCCCCCcEEE---ECCHHHHHHhhhhc
Confidence            46778899999999999998764  678766655555555555 6789999999999876422   34555777766643


Q ss_pred             ----hcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCC
Q 013217          106 ----ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP  181 (447)
Q Consensus       106 ----l~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~  181 (447)
                          ...+|+.|++....++.+....     +.+...|  ++++.++++ .++.+|++++++++++ +|++|+++..+++
T Consensus        81 ~~~~~~~~g~~v~~~~~~~~~~~~~~-----~~~~~~g--~~v~~vp~~-~~~~id~~~l~~~i~~-~t~lv~is~v~~~  151 (376)
T d1eg5a_          81 VAETFEKRKRTIITTPIEHKAVLETM-----KYLSMKG--FKVKYVPVD-SRGVVKLEELEKLVDE-DTFLVSIMAANNE  151 (376)
T ss_dssp             HHHHTTTTCCEEEECTTSCHHHHHHH-----HHHHHTT--CEEEECCBC-TTSCBCHHHHHHHCCT-TEEEEEEESBCTT
T ss_pred             ccccccccCcccccccccchhhHHHH-----HHHHhcC--CEEEEEcCC-CCCeECHHHHHHhcCC-CceEEEEECCccc
Confidence                4678888888876665543221     1122234  466666677 4689999999999988 9999999865554


Q ss_pred             C--CCChHHHHHHHHHh--CCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHH
Q 013217          182 R--DFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES  256 (447)
Q Consensus       182 ~--~~~~~~i~~ia~~~--g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~  256 (447)
                      +  ..|++++.++|+.+  |+++++|++|++|.++.++...+   +|++++|+|||+ ||+| |+++++++.        
T Consensus       152 tG~~~~~~~i~~~~~~~~~~~~~~vD~~q~~g~~~~d~~~~~---~D~~~~s~~K~~-gp~G~~~l~~~~~~--------  219 (376)
T d1eg5a_         152 VGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLE---VDYASFSAHKFH-GPKGVGITYIRKGV--------  219 (376)
T ss_dssp             TCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTC---CSEEEEEGGGGT-SCTTCEEEEECTTS--------
T ss_pred             cceeeeehhhhhhhhhcccCceeEEEeeeccccccccccccC---ccceecccceee-cCCCceeEEeccCc--------
Confidence            3  77999999998766  99999999999998876654443   899999999995 7888 888887741        


Q ss_pred             HhhhccCCC------CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCC
Q 013217          257 AINNAVFPG------LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLR  330 (447)
Q Consensus       257 ~i~~~~~~~------~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~  330 (447)
                      .+.+....+      ..|.++.......+.+..... ...............++.+.|...+.....+........+.+.
T Consensus       220 ~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  298 (376)
T d1eg5a_         220 PIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAV-EELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVS  298 (376)
T ss_dssp             CCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEE
T ss_pred             ccCCcccCCCCcccccCCcccchhhhhHHHHhhccc-cchhhhhhhhhhhhhhhccccccccccccccccccccceeeec
Confidence            122221111      134555555555554444432 3345556666667777888887766555543222222223333


Q ss_pred             CCCCCHHHHHHHHhhcCeEEccCC--CCCCCCC------------CCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          331 PMGIDGARVEKILDMASITLNKNS--VPGDKSA------------LVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       331 ~~~~~~~~~~~~L~~~gI~v~~~~--~p~~~~~------------~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      ..++.+..+...|.++||.++.+.  .+++..+            ..+++||+|++.+||    ++|++++++.|+++++
T Consensus       299 ~~~~~~~~~~~~L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt----~edid~l~~~L~~iv~  374 (376)
T d1eg5a_         299 FPNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNT----EEEVDYFLKKIEEILS  374 (376)
T ss_dssp             CTTCCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCC----HHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHhhCCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCC----HHHHHHHHHHHHHHHh
Confidence            346788999999999999987642  1211100            012469999999998    9999999999999876

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.96  E-value=7.1e-28  Score=232.64  Aligned_cols=331  Identities=15%  Similarity=0.057  Sum_probs=221.2

Q ss_pred             eeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHH
Q 013217           23 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV  102 (447)
Q Consensus        23 i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~  102 (447)
                      |.+.|++..+|+.|++||.....++           .+..+.+.+ +.+++++++++|+++++. +.+.++|||.++.++
T Consensus         2 ~l~~pGP~~~~~~V~~A~~~~~~~~-----------~~~~~~~~~-~~~r~~l~~l~~~~~~~~-~i~~t~s~T~~~~~~   68 (361)
T d1m32a_           2 LLLTPGPLTTSRTVKEAMLFDSCTW-----------DDDYNIGVV-EQIRQQLTALATASEGYT-SVLLQGSGSYAVEAV   68 (361)
T ss_dssp             EECSSSSCCCCHHHHHTTCCCCCTT-----------SHHHHTTTH-HHHHHHHHHHHCSSSSEE-EEEEESCHHHHHHHH
T ss_pred             ccccCCCCCCCHHHHHHhhhhccCC-----------CcHHHHHHH-HHHHHHHHHHhCCCCCCE-EEEECCCHHHHHHHH
Confidence            4578898999999999986432221           122233333 467899999999987653 234457788999999


Q ss_pred             HHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCC--CHHHHHHHhhhhCCcEEEEcCCCC
Q 013217          103 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLV--DYDMLEKTAILFRPKLIIAGASAY  180 (447)
Q Consensus       103 ~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i--d~~~l~~~~~~~~~klii~~~~~~  180 (447)
                      +.++..++|.+++....+.+.....      .....+.....+.  .. .....  +.+.......+ ++++|.++..++
T Consensus        69 ~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~  138 (361)
T d1m32a_          69 LGSALGPQDKVLIVSNGAYGARMVE------MAGLMGIAHHAYD--CG-EVARPDVQAIDAILNADP-TISHIAMVHSET  138 (361)
T ss_dssp             HHHSCCTTCCEEEEESSHHHHHHHH------HHHHHTCCEEEEE--CC-TTSCCCHHHHHHHHHHCT-TCCEEEEESEET
T ss_pred             HHHhhhhccccceeeehhhhhhHHH------Hhhhhhccccccc--cc-ccCCccchhhHHHHHhcc-CccceEEEeeec
Confidence            9999999988887764432221100      0111122122222  22 22223  33333334444 889988875444


Q ss_pred             C-C-CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHH
Q 013217          181 P-R-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA  257 (447)
Q Consensus       181 ~-~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~  257 (447)
                      . + ..|+++|.++|+++|+++++|++|++|.++.++...   ++|++++|+|||+.||.| |+++++++      ..++
T Consensus       139 ~tG~~~~i~~i~~~~~~~g~~~~vDa~qs~G~~~~d~~~~---~~D~~~~s~~K~l~gp~G~g~l~~~~~------~~~~  209 (361)
T d1m32a_         139 TTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAAL---HIDYLISSANKCIQGVPGFAFVIAREQ------KLAA  209 (361)
T ss_dssp             TTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTT---TCSEEEEESSSTTCCCSSEEEEEEEHH------HHTT
T ss_pred             ccccchhhhhhhhhhcccceeeEeecccccCccccccccc---ccceEEeeecccccCCCCceEEEechh------hhhh
Confidence            3 3 889999999999999999999999999887665544   489999999999999999 99999873      3322


Q ss_pred             hhhc-----------------cCCCCCCCCcHHHHHHHHHHHHHhcChhH-HHHHHHHHHHHHHHHHHHHHCCcEeeeCC
Q 013217          258 INNA-----------------VFPGLQGGPHNHTIGGLAVCLKHAQSPEF-KVYQNKVVSNCRALASRLVELGYKLVSGG  319 (447)
Q Consensus       258 i~~~-----------------~~~~~~g~p~~~~~aal~~al~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~g~~~~~~~  319 (447)
                      +...                 ......++++...+.++..++.....++. ....++....++.+.+.+...|+.+..+.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~  289 (361)
T d1m32a_         210 CKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDD  289 (361)
T ss_dssp             CTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCG
T ss_pred             hccccccccccchhhhccccccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhcCCcccCCh
Confidence            2211                 11223467788778787778777665554 45556777778888888888887665432


Q ss_pred             C-C-CeeEEecCC-CCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          320 S-D-NHLVLVDLR-PMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       320 ~-~-~~~~~v~~~-~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      . . +.++.+.+. ..+.+..++.+.|.+.||.+..+    ..  ..++.+|||+..+++    ++|++++.++|+++|
T Consensus       290 ~~rs~~v~~~~~p~~~~~~~~~~~~~l~~~gi~i~~G----~~--~~~~~~Ris~~g~~~----~~di~~lv~al~~~L  358 (361)
T d1m32a_         290 ELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPG----KV--SQSDCFRIGNIGEVY----AADITALLTAIRTAM  358 (361)
T ss_dssp             GGBCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEEC----CC--SSSCEEEEECCSSCC----HHHHHHHHHHHHHHC
T ss_pred             hhcCCcEEEEECCCCCCCCHHHHHHHHHHCCcEEECC----Cc--CCCCEEEEeCCCCCC----HHHHHHHHHHHHHHc
Confidence            1 1 223233332 23467788999999999998543    21  234579999766677    899999999999875

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=1.8e-27  Score=231.72  Aligned_cols=332  Identities=18%  Similarity=0.133  Sum_probs=222.9

Q ss_pred             cCeeEecCCC--CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCcH
Q 013217           21 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGS   96 (447)
Q Consensus        21 ~~i~l~~~~n--~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sGs   96 (447)
                      +-|+|..+++  .+|+.+++++...+.+.. .+|+..      ....++.+...+++.+.+|.+  ++    +|.+|+|+
T Consensus        32 ~vi~l~~g~p~~~~p~~i~~a~~~~~~~~~-~~Y~~~------~G~~~lR~~ia~~~~~~~~~~~~~~----~i~it~G~  100 (382)
T d1b5pa_          32 DLVALTAGEPDFDTPEHVKEAARRALAQGK-TKYAPP------AGIPELREALAEKFRRENGLSVTPE----ETIVTVGG  100 (382)
T ss_dssp             CCEECCCSSCSSCCCHHHHHHHHHHHHTTC-CSCCCT------TCCHHHHHHHHHHHHHTTCCCCCGG----GEEEESHH
T ss_pred             CeEECCCCCCCCCCCHHHHHHHHHHHhcCC-cCCCCC------CCCHHHHHHHHhhhhhhcccccccc----cceecCCH
Confidence            4588877776  468999999988776532 355433      112345555556777777765  43    44558887


Q ss_pred             -HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhhCCcEEE
Q 013217           97 -PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLII  174 (447)
Q Consensus        97 -~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~~~klii  174 (447)
                       +|+..++.++++|||.|++.+|.|.++..        .+...|.  +++.++.++ +++.+|++++++.+++ ++++++
T Consensus       101 ~~al~~~~~~l~~~gd~vl~~~P~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~~~~-~~~~i~  169 (382)
T d1b5pa_         101 SQALFNLFQAILDPGDEVIVLSPYWVSYPE--------MVRFAGG--VVVEVETLPEEGFVPDPERVRRAITP-RTKALV  169 (382)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEEESCCTHHHH--------HHHHTTC--EEEEEECCGGGTTCCCHHHHHTTCCT-TEEEEE
T ss_pred             HHHHHHHHHHhCCCCCEEEECCCCcHHHHH--------HHHHhcC--eEEEEecccccccCCCHHHHHHhCCC-CCeEEE
Confidence             89999999999999999999998876532        2345554  455554543 3568999999998877 889999


Q ss_pred             EcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC---cccEEEeCCCccc--CCCCCceEEe
Q 013217          175 AGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK---YCDVVTTTTHKSL--RGPRGGMIFF  244 (447)
Q Consensus       175 ~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~---~~Di~~~s~~K~l--~Gp~gG~i~~  244 (447)
                      ++.|+||+  ..   .+++|.++|+++|+++|+|+++ ..+.+.+....+..   .-.+++.|++|++  +|.|.||+++
T Consensus       170 ~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlR~G~~~~  248 (382)
T d1b5pa_         170 VNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIY-EHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACG  248 (382)
T ss_dssp             EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTT-TTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEEC
T ss_pred             ECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccc-cceecCCCCCCHHHcCCCCEEEEecchhhccCcHhheEEEEE
Confidence            98888886  44   4678889999999999999996 45555443333221   2348889999986  5889999999


Q ss_pred             ecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHH--hcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCC
Q 013217          245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH--AQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDN  322 (447)
Q Consensus       245 ~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~  322 (447)
                      ++      ++.+.+.........+++...+.++.. ++..  ..........+...++++.+.+.+.+.|+++..+ ..+
T Consensus       249 ~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~p-~gg  320 (382)
T d1b5pa_         249 PK------EVIKAMASVSRQSTTSPDTIAQWATLE-ALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRP-SGA  320 (382)
T ss_dssp             CH------HHHHHHHHHHHTTTCSCCHHHHHHHHH-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC-SBT
T ss_pred             CH------HHHHHHHHHHHhcccCccccccccccc-ccccccchhHHHHHHHHHHHhhhhHHHHHHhhcCCeEecC-Cce
Confidence            87      666655443222222233333222222 2211  1111224445556667778888888888877543 456


Q ss_pred             eeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          323 HLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       323 ~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                      +++|+++.+.+.+...+.+.|.++||.+..+...+     ..+++|+++.  ++    ++++++..+.|.++
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~l~e~gV~v~PG~~F~-----~~~~iRis~~--~~----~e~l~~al~rl~~~  381 (382)
T d1b5pa_         321 FYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFA-----AFGHVRLSYA--TS----EENLRKALERFARV  381 (382)
T ss_dssp             TEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGT-----CTTEEEEECC--SC----HHHHHHHHHHGGGG
T ss_pred             EEEeEeCCCCCCCHHHHHHHHHHCCEEEEeCcccC-----CCCeEEEEEc--CC----HHHHHHHHHHHHHh
Confidence            77899987777778888899999999996543222     2458999863  23    77777777766554

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.96  E-value=1.5e-27  Score=230.43  Aligned_cols=326  Identities=15%  Similarity=0.133  Sum_probs=198.4

Q ss_pred             CCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHH-----HHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHH
Q 013217           28 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDE-----LETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV  102 (447)
Q Consensus        28 ~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~-----le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~  102 (447)
                      ..+.+++++++++.+     |.+||+..++..+.. .+.     +-+..++++++++|++.    + +.+++|++||.++
T Consensus        10 ~~~~l~~~a~~a~~~-----~~~g~~~~~~~~~~~-~~~~~~~~l~~~~~~~~A~~~g~e~----~-~~t~g~t~a~~~~   78 (364)
T d2e7ja1          10 TGGKLTEEARQALLE-----WGDGYSVCDFCTTGR-LDEIKTPPIHDFIHNQLPKFLGCDV----A-RVTNGAREAKFAV   78 (364)
T ss_dssp             HTCCCCHHHHHHHHH-----C---------------------CCHHHHHHTHHHHHTTSSE----E-EEESSHHHHHHHH
T ss_pred             cCCcCCHHHHHHHHH-----HhcCCchhccccccc-cccccChHHHHHHHHHHHHHhCcCE----E-EEECcHHHHHHHH
Confidence            567789999999875     455665544322111 111     22234478999999874    2 2346667999999


Q ss_pred             HHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhh----CCcEEEEcC
Q 013217          103 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILF----RPKLIIAGA  177 (447)
Q Consensus       103 ~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~----~~klii~~~  177 (447)
                      +.++++|||+|++..++|.+++.        .+...|..+..++  ++. .++.+|++++++++++.    ++++|++++
T Consensus        79 ~~al~~~gd~Vi~~~~~h~s~~~--------~~~~~g~~v~~v~--~~~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~  148 (364)
T d2e7ja1          79 MHSLAKKDAWVVMDENCHYSSYV--------AAERAGLNIALVP--KTDYPDYAITPENFAQTIEETKKRGEVVLALITY  148 (364)
T ss_dssp             HHHHCCTTCEEEEETTCCHHHHH--------HHHHTTCEEEEEC--CCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEES
T ss_pred             HHHHhCCCcEEEeecccccccch--------HHHhccceEEEee--eccccccccCHHHHHhhhhhhcccCCceEEEeec
Confidence            99999999999999988876542        2345565444444  432 46789999999999763    234777776


Q ss_pred             CCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhH
Q 013217          178 SAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVEL  254 (447)
Q Consensus       178 ~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~  254 (447)
                      +++++  ..|+++|.++|++||+++++|++|+.|.++.+....   ++|++++|+||++++|.+ |++++++      ++
T Consensus       149 ~~n~tG~~~~l~~I~~ia~~~~i~livD~a~~~g~~~~~~~~~---g~D~~~~S~~K~~~~~g~~g~l~~~~------~~  219 (364)
T d2e7ja1         149 PDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEI---GADFIVGSGHKSMAASGPIGVMGMKE------EW  219 (364)
T ss_dssp             SCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHH---TCSEEEEEHHHHSSCCSSCEEEEECT------TT
T ss_pred             CCCCCceeecchhheeccccccchhhccccchhhhhhhccccc---ccceeeeccccccCCCCCEEEEEECH------HH
Confidence            65553  789999999999999999999999887654322111   489999999999987765 8888887      34


Q ss_pred             HHHhhhccCCC-------CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCe-eEE
Q 013217          255 ESAINNAVFPG-------LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNH-LVL  326 (447)
Q Consensus       255 ~~~i~~~~~~~-------~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~-~~~  326 (447)
                      .+.+.....+.       ..++.......++..+++.+..  ..+...+..++++++.++|.+.|+.++......+ ...
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  297 (364)
T d2e7ja1         220 AEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRE--RIKRWDEEVEKARRFAAEMEKLGIKQLGDNPHNHDLMF  297 (364)
T ss_dssp             TTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHH--HGGGHHHHHHHHHHHHHHHHHTTCEEESSSSCCSSEEE
T ss_pred             HHHHHhhccccCcccccccccccchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCeecCCCCCCcceEE
Confidence            33332211111       1122222223333334443321  1122334457788899999998988775432222 223


Q ss_pred             ecCCC-------CCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          327 VDLRP-------MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       327 v~~~~-------~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      +....       .......+...|...|+..-   .|+     ....+|+++.     +.+++||++++++|+++++.+
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~g-----~~~~~~~~~~-----~~t~edid~~~~~l~ei~~~y  363 (364)
T d2e7ja1         298 FHAEVLYEISKKAKGGRFFLYRELKSRKIHGI---KPG-----LTRYFKLSTY-----GLSDEEVDYVLNAFKEIIEKY  363 (364)
T ss_dssp             EECHHHHHHHHHSSSGGGHHHHHHHHTTEECS---CTT-----CCSEEEEECT-----TCCHHHHHHHHHHHHHHHHHC
T ss_pred             EeccchHHHHHHhhccchHHHHHHHhcCCcee---cCC-----CcceEEEecc-----CCCHHHHHHHHHHHHHHHHHh
Confidence            22210       00112334555666676532   111     1335777643     334899999999999998753

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.96  E-value=1.6e-27  Score=232.46  Aligned_cols=353  Identities=13%  Similarity=0.092  Sum_probs=233.2

Q ss_pred             HHHHHHHHHHHHHhhcCeeEecCCC--CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC-
Q 013217            6 PEVCEIITKEKERQFKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-   82 (447)
Q Consensus         6 ~~~~~~~~~e~~~~~~~i~l~~~~n--~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~-   82 (447)
                      ++|+++.....+ .++-|+|..+++  .+|+.|++++.+.+.+.. .+|+..      ....++.+...+++.+..+.. 
T Consensus        12 s~ir~~~~~~~~-~~dvi~l~~g~p~~~~p~~v~~~~~~a~~~~~-~~Y~~~------~G~~~lr~aia~~~~~~~~~~~   83 (388)
T d1gdea_          12 SEIRKLFDIAAG-MKDVISLGIGEPDFDTPQHIKEYAKEALDKGL-THYGPN------IGLLELREAIAEKLKKQNGIEA   83 (388)
T ss_dssp             CHHHHHHHHHHH-CTTCEECCCCSCCSCCCHHHHHHHHHHHHTTC-CSCCCT------TCCHHHHHHHHHHHHHHHCCCC
T ss_pred             cHHHHHHHHHhC-CCCeEECCCCCCCCCCCHHHHHHHHHHHhcCc-cCCCCC------cCCHHHHHHHHHHHHhhccccC
Confidence            567777775433 467899988776  468999999988876532 344432      112345444445666555543 


Q ss_pred             -CCccceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHH
Q 013217           83 -ENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYD  159 (447)
Q Consensus        83 -~~~~~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~  159 (447)
                       +++   +|.+++|+ +++..++.++++|||+|++.+|.|.++..        .+...|.  +++.+++++ +++.+|++
T Consensus        84 ~~~~---~i~~t~G~~~~l~~~~~~l~~~gd~vlv~~P~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~  150 (388)
T d1gdea_          84 DPKT---EIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAP--------AVILAGG--KPVEVPTYEEDEFRLNVD  150 (388)
T ss_dssp             CTTT---SEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHH--------HHHHHTC--EEEEEECCGGGTTCCCHH
T ss_pred             CChh---eeeeccCcchHHHHHHHHhcCCCCEEEECCCCcHHHHH--------HHHHcCC--EEEEeecccccCCCCCHH
Confidence             221   34457777 89999999999999999999998876532        2344554  555555543 45689999


Q ss_pred             HHHHHhhhhCCcEEEEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCC---C---cccEEEe
Q 013217          160 MLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K---YCDVVTT  228 (447)
Q Consensus       160 ~l~~~~~~~~~klii~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~---~---~~Di~~~  228 (447)
                      +|++.+++ ++++++++.|+||+  ..   ++++|.++|+++|+++|+|++|. .+...+....++   .   ...+++.
T Consensus       151 ~l~~~~~~-~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~-~~~~~~~~~~~~~~~~~~~~~~i~~~  228 (388)
T d1gdea_         151 ELKKYVTD-KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYE-HFIYDDARHYSIASLDGMFERTITVN  228 (388)
T ss_dssp             HHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT-TCBCTTCCCCCGGGSTTCGGGEEEEE
T ss_pred             HHHHhCcc-CCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCCh-hhhhccCCCCChhhccCCCCeEEEEe
Confidence            99999987 89999999888886  43   46788899999999999999963 444332211111   1   1348889


Q ss_pred             CCCccc--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc-ChhHHHHHHHHHHHHHHHH
Q 013217          229 TTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-SPEFKVYQNKVVSNCRALA  305 (447)
Q Consensus       229 s~~K~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~-~~~~~~~~~~~~~~~~~l~  305 (447)
                      |++|++  +|.|.||+++++      ++.+.+.........++ +.....+.+.+++.-. ........+.+.++...+.
T Consensus       229 S~SK~~~~~GlR~G~ii~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  301 (388)
T d1gdea_         229 GFSKTFAMTGWRLGFVAAPS------WIIERMVKFQMYNATCP-VTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVW  301 (388)
T ss_dssp             ESTTTTTCGGGCCEEEECCH------HHHHHHHHHHHTTTCSC-CHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CChhhccCccccEEEEEeec------cchhhhhhccccccccc-cccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhh
Confidence            999986  588999999988      66665554333332233 3332223333432111 0112445556667777888


Q ss_pred             HHHHHCCcEeeeCCCCCeeEEecCCCCCCCHHHHHH-HHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHH
Q 013217          306 SRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEK-ILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEF  384 (447)
Q Consensus       306 ~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di  384 (447)
                      +.|.+.++....+ ..+.++|++++..+.+..++.+ .|+++||.+.++...+   +..++.+|+++.  ++    ++++
T Consensus       302 ~~l~~~~~~~~~p-~gg~fl~~~l~~~~~~~~~~~~~ll~e~gV~v~PG~~F~---~~~~~~iRis~~--~~----~e~l  371 (388)
T d1gdea_         302 KRLNEMGLPTVKP-KGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFG---KAGEGYVRISYA--TA----YEKL  371 (388)
T ss_dssp             HHHHHTTCCCCCC-CBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGC---GGGTTBEEEECC--SC----HHHH
T ss_pred             hhhhhccccccCC-CceEEEEEECCCCCCCHHHHHHHHHHhCCEEEEechhhC---CCCCCEEEEEec--CC----HHHH
Confidence            8888888776543 3466788888766667777665 4678899996542221   112467999864  33    7889


Q ss_pred             HHHHHHHHHHHHHH
Q 013217          385 VAIADFIHEGVEIT  398 (447)
Q Consensus       385 ~~l~~~i~~~l~~~  398 (447)
                      ++.++.|+++++..
T Consensus       372 ~~al~rL~~~l~e~  385 (388)
T d1gdea_         372 EEAMDRMERVLKER  385 (388)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999888754

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=99.95  E-value=1.5e-26  Score=225.50  Aligned_cols=337  Identities=12%  Similarity=0.070  Sum_probs=226.6

Q ss_pred             hcCeeEecCCC--CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-
Q 013217           20 FKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-   96 (447)
Q Consensus        20 ~~~i~l~~~~n--~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-   96 (447)
                      ++.|+|..+++  .+|+.+++++...+.+.+ .+|+..      +...++.+...+++.+.+|...+.  -+|.+|+|+ 
T Consensus        30 ~~vi~l~~G~p~~~~p~~v~~a~~~~~~~~~-~~Y~~~------~G~~~lR~aia~~~~~~~g~~~~~--~~i~it~G~~  100 (388)
T d1j32a_          30 IDVCSFSAGEPDFNTPKHIVEAAKAALEQGK-TRYGPA------AGEPRLREAIAQKLQRDNGLCYGA--DNILVTNGGK  100 (388)
T ss_dssp             CCCEECCCSSCSSCCCHHHHHHHHHHHHTTC-CSCCCT------TCCHHHHHHHHHHHHHHHCCCCCG--GGEEEESHHH
T ss_pred             CCeEECCCCCCCCCCCHHHHHHHHHHHhcCC-CCCCCC------CCCHHHHHHHHHHHHHhcccCCCC--ceEEEcCCHH
Confidence            35688877665  357999999988776532 234332      112345445556787887765221  145568887 


Q ss_pred             HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhhCCcEEEE
Q 013217           97 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLIIA  175 (447)
Q Consensus        97 ~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~~~klii~  175 (447)
                      +++..++.++++|||+|++.+|.|.++..        .+...|.  +.+.++.+. +++.+|++++++.+++ +++++++
T Consensus       101 ~al~~~~~~~~~~gd~Vlv~~P~y~~~~~--------~~~~~~~--~~v~~~~~~~~~~~~d~~~l~~~~~~-~~~~~~~  169 (388)
T d1j32a_         101 QSIFNLMLAMIEPGDEVIIPAPFWVSYPE--------MVKLAEG--TPVILPTTVETQFKVSPEQIRQAITP-KTKLLVF  169 (388)
T ss_dssp             HHHHHHHHHHCCTTCEEEEESSCCTHHHH--------HHHHTTC--EEEEECCCGGGTTCCCHHHHHHHCCT-TEEEEEE
T ss_pred             HHHHHHHHHHhCCCCEEEEcCCCcHHHHH--------HHHHhcC--eEEEEecccccccCCCHHHHHHhCCC-CCeEEEE
Confidence            89999999999999999999998876531        2334444  444444443 3568999999999987 8899998


Q ss_pred             cCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-------cccEEEeCCCccc--CCCCCce
Q 013217          176 GASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-------YCDVVTTTTHKSL--RGPRGGM  241 (447)
Q Consensus       176 ~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-------~~Di~~~s~~K~l--~Gp~gG~  241 (447)
                      +.|+||+  ..+   +++|.++|+++|+++|+|+++ ..+.+.+....++.       ...+++.|++|++  +|.|.||
T Consensus       170 ~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y-~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~  248 (388)
T d1j32a_         170 NTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIY-EKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGF  248 (388)
T ss_dssp             ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTT-TTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEE
T ss_pred             CCCCCCCCcccchhhhhhhhcccccCCeEEEchhhh-hcccccCCCCCCHHHhCcccccceeEecCChhhhhcchhHeEE
Confidence            8888886  444   578888899999999999996 34444332222221       1247889999986  6889999


Q ss_pred             EEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCC
Q 013217          242 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGS  320 (447)
Q Consensus       242 i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~  320 (447)
                      ++.++      ++.+.+........ ..++.....+...++... ...+++..+.+.++++.+.+.|.+. |+++..+ .
T Consensus       249 ~~~~~------~~~~~~~~~~~~~~-~~~~~~~q~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p-~  319 (388)
T d1j32a_         249 LAGPV------PLVKAATKIQGHST-SNVCTFAQYGAIAAYENS-QDCVQEMLAAFAERRRYMLDALNAMPGLECPKP-D  319 (388)
T ss_dssp             EECCH------HHHHHHHHHHHTTT-CSCCHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCC-C
T ss_pred             EEECH------HHHHHHHHhhhhcc-ccccHHHHHHHhhcccch-HHHHHHHHHHHHHHHHHHHHHHHhCCCCEecCC-C
Confidence            99987      66665544322211 233333333333344432 3445777888889999999999884 7776543 4


Q ss_pred             CCeeEEecCCCCCCCHHHHH-HHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          321 DNHLVLVDLRPMGIDGARVE-KILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       321 ~~~~~~v~~~~~~~~~~~~~-~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      .++++|+++...+.+..++. ++|+++||.+.++...+     .++++|+++.  ++    ++++++.++.|+++++.
T Consensus       320 gg~~l~~~l~~~~~~~~~~~~~ll~~~gV~v~pG~~F~-----~~~~~Rls~~--~~----~e~l~~al~rl~~~l~~  386 (388)
T d1j32a_         320 GAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFG-----ADDCIRLSYA--TD----LDTIKRGMERLEKFLHG  386 (388)
T ss_dssp             BTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGT-----CTTBEEEECC--SC----HHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCCHHHHHHHHHHhCCEEEEeccccC-----CCCeEEEEEe--CC----HHHHHHHHHHHHHHHHH
Confidence            46777888876556666665 45678999996543222     2468999964  33    78888888888887764

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.95  E-value=1.8e-26  Score=223.87  Aligned_cols=334  Identities=13%  Similarity=0.072  Sum_probs=231.9

Q ss_pred             cCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHH
Q 013217           21 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  100 (447)
Q Consensus        21 ~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~  100 (447)
                      +.+.+.|++..+|+.|++||.....+           +.+.++.+.++ .+++.+++++|++.++.  .+.+++||.++.
T Consensus        18 ~~~l~~PGP~~v~~~Vl~am~~~~~~-----------hr~~ef~~i~~-~~r~~l~~ll~~~~~~~--i~~~g~gT~~~~   83 (377)
T d1vjoa_          18 SRLLLGPGPSNAHPSVLQAMNVSPVG-----------HLDPAFLALMD-EIQSLLRYVWQTENPLT--IAVSGTGTAAME   83 (377)
T ss_dssp             CCEECSSSCCCCCHHHHHHHSSCCCC-----------TTSHHHHHHHH-HHHHHHHHHHTCCCSCE--EEESSCHHHHHH
T ss_pred             cceeecCCCCCCCHHHHHHhCcCCCC-----------CCCHHHHHHHH-HHHHHHHHHhCCCCCeE--EEEcCcHHHHHH
Confidence            35778899999999999998543222           23456666555 67899999999976543  244567789999


Q ss_pred             HHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCC
Q 013217          101 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY  180 (447)
Q Consensus       101 ~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~  180 (447)
                      +++..++.+|+++++....+.+.....      .....+....  .+... .+...+.+..+......++++|.+...++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  154 (377)
T d1vjoa_          84 ATIANAVEPGDVVLIGVAGYFGNRLVD------MAGRYGADVR--TISKP-WGEVFSLEELRTALETHRPAILALVHAET  154 (377)
T ss_dssp             HHHHHHCCTTCEEEEEESSHHHHHHHH------HHHHTTCEEE--EEECC-TTCCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred             HHHHhccccccccceeeechhhhhhhh------hhhhhccccc--ccccC-CCCcccchhhhhhhhcCcceeeeeeeeec
Confidence            999999999999998876554432110      1112222222  22222 33456677776666666899988874333


Q ss_pred             -CC-CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHH
Q 013217          181 -PR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA  257 (447)
Q Consensus       181 -~~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~  257 (447)
                       ++ ..|+++|.++|+++|+++++|++|+.|.+..++...   ++|++++|.|||+.||.| |+++.++      ...+.
T Consensus       155 ~tg~~~~i~~i~~~~~~~g~~~~vDa~~~~g~~~~~~~~~---~~d~~~~s~~K~~~gp~g~~~~~~~~------~~~~~  225 (377)
T d1vjoa_         155 STGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAW---GVDLAYSCSQKGLGCSPGASPFTMSS------RAIEK  225 (377)
T ss_dssp             TTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTT---TCSEEECCSSSTTCSCSSCEEEEECH------HHHHH
T ss_pred             cceeeechhhhhhhhhhccceEEEecchhhhhhhhccccc---ccceeeecccccccCCCEEEEecchh------hHHhh
Confidence             33 789999999999999999999999998776655444   389999999999999998 6666665      33333


Q ss_pred             hhhc-------------------cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeC
Q 013217          258 INNA-------------------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSG  318 (447)
Q Consensus       258 i~~~-------------------~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~  318 (447)
                      ....                   ......+++....+.++..+.......+.+...++..+++..+.+.+.+.++..+.+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  305 (377)
T d1vjoa_         226 LQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVE  305 (377)
T ss_dssp             HHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSC
T ss_pred             hhccCCCCcceeeccchhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhccCceeecC
Confidence            2211                   112234566777777777677766666778888888899999999999988776543


Q ss_pred             CC-CC-eeEEecCCCCCCCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEec-CccccCCCCHHHHHHHHHHHHHH
Q 013217          319 GS-DN-HLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGS-PAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       319 ~~-~~-~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~-~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                      .. .+ ..+.+.+ +.++++.++.+.| +++||.+..+.-     ....+.+|+|+ +.+++    ++|+++++++|+++
T Consensus       306 ~~~rs~~v~~~~~-p~~~~~~~l~~~L~~~~gI~v~~G~~-----~~~~~~~Ris~~g~~~t----~edi~~lv~al~~~  375 (377)
T d1vjoa_         306 KEYRLPTLTTVCI-PDGVDGKAVARRLLNEHNIEVGGGLG-----ELAGKVWRVGLMGFNSR----KESVDQLIPALEQV  375 (377)
T ss_dssp             GGGBCSSEEEEEC-CTTCCHHHHHHHHHHHHCEECEECCG-----GGTTTEEEEECCGGGCS----HHHHHHHHHHHHHH
T ss_pred             hHhcCCeEEEEEC-CCCCCHHHHHHHHHhcCCEEEecCcc-----cccCCEEEEecCcCCCC----HHHHHHHHHHHHHH
Confidence            21 12 2233343 3567888888766 678999865421     12345799996 55666    89999999999988


Q ss_pred             HH
Q 013217          395 VE  396 (447)
Q Consensus       395 l~  396 (447)
                      |+
T Consensus       376 l~  377 (377)
T d1vjoa_         376 LR  377 (377)
T ss_dssp             HC
T ss_pred             hC
Confidence            73

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.2e-26  Score=225.77  Aligned_cols=333  Identities=16%  Similarity=0.087  Sum_probs=225.7

Q ss_pred             eEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC-CCccceeeecCCcHHHHHHH
Q 013217           24 ELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEV  102 (447)
Q Consensus        24 ~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~-~~~~~~~v~~~sGs~a~~~~  102 (447)
                      .|+|++..+|++|++||.....        +.   .+.++.+.. +.+++.++++++.. ++.....+.+.|||.++.++
T Consensus         6 l~~PGP~~v~~~V~~Am~~~~~--------~h---r~~~f~~~~-~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~   73 (382)
T d2bkwa1           6 LLIPGPIILSGAVQKALDVPSL--------GH---TSPEFVSIF-QRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIF   73 (382)
T ss_dssp             ECSSSSCCCCHHHHHTTSCCCC--------CT---TSHHHHHHH-HHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHH
T ss_pred             ccCCCCCCCCHHHHHHhCcccC--------CC---CcHHHHHHH-HHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHH
Confidence            4789999999999999853221        11   123444433 35667888888752 11111334567888999999


Q ss_pred             HHHhc---CCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCC
Q 013217          103 YTAIL---KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA  179 (447)
Q Consensus       103 ~~al~---~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~  179 (447)
                      +.+++   +|||+|++....+.+.....      .....+....  .+...+.+...+.+.+++++...++++++++..+
T Consensus        74 ~~~l~~~~~~gd~vlv~~~~~~~~~~~~------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  145 (382)
T d2bkwa1          74 ASNFILSKAPNKNVLVVSTGTFSDRFAD------CLRSYGAQVD--VVRPLKIGESVPLELITEKLSQNSYGAVTVTHVD  145 (382)
T ss_dssp             HHHHSCTTCSCCEEEEECSSHHHHHHHH------HHHHTTCEEE--EECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEE
T ss_pred             HHHHHHhcCCCCceEEEEechhhhhhhh------hccccccccc--cccccCCCCccchhHHHHHhhhccchheeeeecc
Confidence            99986   68999999875444332110      1122333222  2223334567899999988887789998887443


Q ss_pred             CC--CCCChHHHHHHHHHhC--CEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhH
Q 013217          180 YP--RDFDYPRMRQIADAVG--ALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVEL  254 (447)
Q Consensus       180 ~~--~~~~~~~i~~ia~~~g--~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~  254 (447)
                      +.  ...|++++.++|++++  +++++|++|++|.++.++..+   ++|++++|.||||+||.| |+++++++      .
T Consensus       146 ~~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~g~~pid~~~~---giD~~~~s~~K~l~gP~G~g~l~vs~~------~  216 (382)
T d2bkwa1         146 TSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEW---GVDFALTASQKAIGAPAGLSISLCSSR------F  216 (382)
T ss_dssp             TTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTT---TCSEEEEESSSTTCCCSCEEEEEECHH------H
T ss_pred             ccccccccchhhhhhccccccceeeeeeccccccccccccccc---CeeEEeecccccCcCCCchhhhhccHH------H
Confidence            33  3789999999998874  999999999999886665444   489999999999999999 99999883      3


Q ss_pred             HHHhhh-------------------------ccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHH
Q 013217          255 ESAINN-------------------------AVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLV  309 (447)
Q Consensus       255 ~~~i~~-------------------------~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~  309 (447)
                      .+++..                         .....+.+||+...+.++..|++.+..++.+...++..+.++++++.+.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~  296 (382)
T d2bkwa1         217 MDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLV  296 (382)
T ss_dssp             HHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhh
Confidence            322211                         0112235789999999999999998888888888888888889998887


Q ss_pred             H-CCcEeeeCCC---CCe-eEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHH
Q 013217          310 E-LGYKLVSGGS---DNH-LVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEF  384 (447)
Q Consensus       310 ~-~g~~~~~~~~---~~~-~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di  384 (447)
                      + .++..+....   .++ ++.+.+.    ++.++.++|+++||.+..+.-    .....+.+|||+..+++   +++|+
T Consensus       297 ~~~~~~~~~~~~~~~~s~~v~~~~~~----~~~~~~~~L~~~gi~i~~G~~----~~~~~~~~Ri~~~G~~~---~~e~i  365 (382)
T d2bkwa1         297 NGLQLTSVSRYPSNMSAHGLTAVYVA----DPPDVIAFLKSHGVVIAGGIH----KDIGPKYIRIGHMGVTA---CNKNL  365 (382)
T ss_dssp             TTTCCEESSCSSSTTBCSSCEEEECS----CHHHHHHHHHHTTEECBCCCC----TTTGGGEEEECCCGGGT---SSTTC
T ss_pred             hcccccccccCchhccCCcEEEEcCC----CHHHHHHHHHHCCeEEECCCC----hhhcCCEEEEeCCcCCC---CHHHH
Confidence            6 4454443211   122 2223322    578899999999999975421    12334579999554443   17788


Q ss_pred             HHHHHHHHHHHH
Q 013217          385 VAIADFIHEGVE  396 (447)
Q Consensus       385 ~~l~~~i~~~l~  396 (447)
                      +++.++|+.+..
T Consensus       366 ~~l~~~l~~i~~  377 (382)
T d2bkwa1         366 PYMKNCFDLIKL  377 (382)
T ss_dssp             THHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888888865443

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.95  E-value=2e-26  Score=222.47  Aligned_cols=327  Identities=17%  Similarity=0.170  Sum_probs=233.0

Q ss_pred             ecCCCCC----CHHHHHHHhhhhhccCCCCCCCCcccCch-hHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHH
Q 013217           26 IASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGGN-EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  100 (447)
Q Consensus        26 ~~~~n~~----~~~v~~a~~~~~~~~~~~g~~~~~~~~g~-~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~  100 (447)
                      ..|.+|+    .|.++++....+. +|..|..++|...|. +...++|    +++++++|.+.     .+.++||..||.
T Consensus        50 FsSndYLGL~~~p~v~~a~~~al~-~yG~gs~~Sr~~~G~~~~h~~LE----~~lA~~~g~e~-----all~~sG~~An~  119 (396)
T d2bwna1          50 WCGNDYLGMGQHPVVLAAMHEALE-AVGAGSGGTRNISGTTAYHRRLE----AEIAGLHQKEA-----ALVFSSAYNAND  119 (396)
T ss_dssp             CSCSCTTSGGGCHHHHHHHHHHHH-HHCSCCCSBTTTBCCBHHHHHHH----HHHHHHTTCSE-----EEEESCHHHHHH
T ss_pred             EEcccccCcCCCHHHHHHHHHHHH-HhCCCccccccccCCchHHHHHH----HHHHHHhCCCc-----eeeeecchHHHH
Confidence            4788887    6999999888775 577888888876664 5567787    68999999985     355699999999


Q ss_pred             HHHHHh--cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh---CCcEEEE
Q 013217          101 EVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF---RPKLIIA  175 (447)
Q Consensus       101 ~~~~al--~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~---~~klii~  175 (447)
                      .++.++  ..+||.|+.....|.+.+.        .+.+++.  +++.++.      .|+++++++++..   ++++|++
T Consensus       120 ~~i~~l~~~~~~d~i~~D~~~Hasi~~--------g~~ls~a--~~~~f~H------nd~~~l~~l~~~~~~~~~~~iv~  183 (396)
T d2bwna1         120 ATLSTLRVLFPGLIIYSDSLNHASMIE--------GIKRNAG--PKRIFRH------NDVAHLRELIAADDPAAPKLIAF  183 (396)
T ss_dssp             HHHHHHHHHSTTCEEEEETTCCHHHHH--------HHHHSCC--CEEEECT------TCHHHHHHHHHHSCTTSCEEEEE
T ss_pred             HHHHHHhcccCCCceeehhhhhhccch--------hhhcccc--CceEeec------chHHHhhhHHhhhcccCceeEEE
Confidence            999988  5789999888876655431        3344554  3344433      4677777666542   3445555


Q ss_pred             c--CCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccC-----CCCCCcccEEEeCCCcccCCCCCceEEeecCC
Q 013217          176 G--ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVV-----ADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDP  248 (447)
Q Consensus       176 ~--~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-----~~~~~~~Di~~~s~~K~l~Gp~gG~i~~~~~~  248 (447)
                      .  .|..+...|+++|.++|++||+++++|+||+.|.+.....     ....+..|++++|++|.| |..||++++++  
T Consensus       184 egvySmdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~-g~~Gg~v~~~~--  260 (396)
T d2bwna1         184 ESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAY-GVFGGYIAASA--  260 (396)
T ss_dssp             ESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTT-CSCCEEEEECH--
T ss_pred             EeeccCcccccccHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeecccccc-cccccccchhH--
Confidence            4  2333347899999999999999999999999998754221     011124799999999997 55688999988  


Q ss_pred             cchhhHHHHhhhccCCCC-CCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEe
Q 013217          249 VLGVELESAINNAVFPGL-QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLV  327 (447)
Q Consensus       249 ~~~~~~~~~i~~~~~~~~-~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v  327 (447)
                          ++.+.+.....+.. .+++.+..+++...+++.+......+.+++...+.+++.+.|.+.|+.+..  ++++++.+
T Consensus       261 ----~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~g~~~~~--~~spIvpv  334 (396)
T d2bwna1         261 ----RMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIID--HGSHIVPV  334 (396)
T ss_dssp             ----HHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCBCC--CSSSCEEE
T ss_pred             ----HHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhcCCCcCC--CCCCEEEE
Confidence                67776664332322 334455666666667877776666777788889999999999999987754  45666655


Q ss_pred             cCCCCCCCHHHHHHH-HhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          328 DLRPMGIDGARVEKI-LDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       328 ~~~~~~~~~~~~~~~-L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                      .+.... ....+.+. |+++||.+.....|.  .|...+++|++.++.+|    ++||++++++|+++
T Consensus       335 ~ig~~~-~~~~~a~~lL~e~Gi~v~~i~~Pt--Vp~g~~rlRi~lsa~ht----~edId~l~~~L~~i  395 (396)
T d2bwna1         335 VIGDPV-HTKAVSDMLLSDYGVYVQPINFPT--VPRGTERLRFTPSPVHD----LKQIDGLVHAMDLL  395 (396)
T ss_dssp             ECCCHH-HHHHHHHHHHHHHCEECCEECTTT--SCTTCCEEEECCCTTSC----HHHHHHHHHHHHHH
T ss_pred             EeCCHH-HHHHHHHHHHHhCCEEEEEECCCc--CCCCCeeEEEEeCccCC----HHHHHHHHHHHHHh
Confidence            554211 22345544 678999987643342  23456789999999998    99999999999875

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=6.4e-26  Score=218.93  Aligned_cols=340  Identities=13%  Similarity=0.103  Sum_probs=221.4

Q ss_pred             eeEecCCC--CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-HHH
Q 013217           23 LELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PAN   99 (447)
Q Consensus        23 i~l~~~~n--~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a~   99 (447)
                      |.|..++.  ++|+.+++++.+.+.+.. .+|+..   +|.    ++.+...+++++.+|.+.+.  .+|.+|+|+ +++
T Consensus         2 ~~~~~~~~df~~p~~i~eal~~~~~~~~-~~Y~~~---~g~----~lr~~ia~~~~~~~g~~~~~--~~i~it~G~~~~l   71 (361)
T d1d2fa_           2 LPFTISDMDFATAPCIIEALNQRLMHGV-FGYSRW---KND----EFLAAIAHWFSTQHYTAIDS--QTVVYGPSVIYMV   71 (361)
T ss_dssp             EECCSSSCSSCCCHHHHHHHHHHHTTCC-CCCCCS---CCH----HHHHHHHHHHHHHSCCCCCG--GGEEEESCHHHHH
T ss_pred             cCcCCCCCCCCCCHHHHHHHHHHHhCCC-CCCCCC---CCH----HHHHHHHHHHHHHhCCCCCc--ceEEEeCCHHHHH
Confidence            34443443  457999999988876532 255543   332    34444556888888876221  134457777 899


Q ss_pred             HHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCC
Q 013217          100 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA  179 (447)
Q Consensus       100 ~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~  179 (447)
                      ..++.++++|||+|++++|.|+++..        .+...|.....++.....+++.+|++++++.+...++++|+++.++
T Consensus        72 ~~~~~~l~~~gd~Vlv~~P~y~~~~~--------~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~  143 (361)
T d1d2fa_          72 SELIRQWSETGEGVVIHTPAYDAFYK--------AIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQ  143 (361)
T ss_dssp             HHHHHHSSCTTCEEEEEESCCHHHHH--------HHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSC
T ss_pred             HHHhhhccccccccccccccccchhH--------HHHhhcceEEeecccccccccccccccchhhcccCCceeEEecccc
Confidence            99999999999999999998876632        2334454333344433335567999999999977689999999888


Q ss_pred             CCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC----cccEEEeCCCccc--CCCCCceEEeecCC
Q 013217          180 YPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSL--RGPRGGMIFFKKDP  248 (447)
Q Consensus       180 ~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~----~~Di~~~s~~K~l--~Gp~gG~i~~~~~~  248 (447)
                      ||+  ..   ++++|.++|+++|+++|+|+++ .++.+.+..+.++.    ...++..|++|++  +|.|+|++++... 
T Consensus       144 NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y-~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~~-  221 (361)
T d1d2fa_         144 NPTGKVWTCDELEIMADLCERHGVRVISDEIH-MDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIENS-  221 (361)
T ss_dssp             TTTCCCCCTTHHHHHHHHHHHTTCEEEEECTT-TTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECSH-
T ss_pred             cccccccchhhhhhhhhhhhhhheeeeecccc-cccccccccccccccccccccccccccccccccccccceeeecchh-
Confidence            886  33   4789999999999999999996 55555443333322    1236778888864  6889999887652 


Q ss_pred             cchhhHHHH-hhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH--CCcEeeeCCCCCeeE
Q 013217          249 VLGVELESA-INNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE--LGYKLVSGGSDNHLV  325 (447)
Q Consensus       249 ~~~~~~~~~-i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~~~~~~  325 (447)
                          ...+. +.........++|....+++...++... ....++......++++.+.+.+.+  .++.+..+ ..++++
T Consensus       222 ----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p-~gg~~~  295 (361)
T d1d2fa_         222 ----SSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQG-APWLDALRIYLKDNLTYIADKMNAAFPELNWQIP-QSTYLA  295 (361)
T ss_dssp             ----HHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCC-SBCSEE
T ss_pred             ----HHHHHHhhhcccccccccchhhhHHHHHHHhhcc-chhhhcccccchhhHHHHHHHhhhhccccccccc-CceeEE
Confidence                23222 2222222233455555554433344332 223456667777777777777766  35555443 346677


Q ss_pred             EecCCCCCCCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          326 LVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       326 ~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      |+++.+.++++.++.+.| +++||.+..+...+   +...+.+|+++.  ++    ++++++..+.|.++++.
T Consensus       296 ~~~l~~~~~~~~~~~~~Ll~~~gv~v~pG~~F~---~~~~~~vRis~~--~~----~e~l~~al~rl~~~l~~  359 (361)
T d1d2fa_         296 WLDLRPLNIDDNALQKALIEQEKVAIMPGYTYG---EEGRGFVRLNAG--CP----RSKLEKGVAGLINAIRA  359 (361)
T ss_dssp             EEECGGGCCCHHHHHHHHHHTTCEECEEGGGGC---GGGTTEEEEECC--SC----HHHHHHHHHHHHHHHHH
T ss_pred             EEEccCCCCCHHHHHHHHHHhCCEEEEeccccC---CCCCCEEEEEEc--CC----HHHHHHHHHHHHHHHHh
Confidence            888877778888877765 67899996543222   122457999863  33    78888888888887764

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=1.4e-25  Score=214.64  Aligned_cols=325  Identities=14%  Similarity=0.066  Sum_probs=224.5

Q ss_pred             eEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHH
Q 013217           24 ELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY  103 (447)
Q Consensus        24 ~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~  103 (447)
                      .|+|++..+|+.|++||.....++           .+.++.+.+ +.+++.++++++.+.+   +.+.+.|||.++.+++
T Consensus         3 L~~PGP~~v~~~V~~am~~~~~~h-----------r~~~f~~i~-~~~~~~l~~ll~~~~~---~i~~~gsgT~a~e~~~   67 (348)
T d1iuga_           3 LLTPGPVRLHPKALEALARPQLHH-----------RTEAAREVF-LKARGLLREAFRTEGE---VLILTGSGTLAMEALV   67 (348)
T ss_dssp             ECSSSSCCCCHHHHHHHHSCCCCT-----------TSHHHHHHH-HHHHHHHHHHHTCSSE---EEEEESCHHHHHHHHH
T ss_pred             ccCCCCCCCCHHHHHHhcCCCCCC-----------CCHHHHHHH-HHHHHHHHHHhCCCCC---EEEEeCchHHHHHHHH
Confidence            478999999999999997643321           234444444 4678899999998764   3455688889999999


Q ss_pred             HHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCC--C
Q 013217          104 TAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--P  181 (447)
Q Consensus       104 ~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~--~  181 (447)
                      .++++|||+|++....   +++..+.   ..++..+..+....  .+ ....++++++    ...+++.|++++..+  +
T Consensus        68 ~nl~~~g~~vlv~~~G---~f~~~~~---~~a~~~~~~~~~~~--~~-~g~~~~~~~~----~~~~~~~v~~~h~eTstG  134 (348)
T d1iuga_          68 KNLFAPGERVLVPVYG---KFSERFY---EIALEAGLVVERLD--YP-YGDTPRPEDV----AKEGYAGLLLVHSETSTG  134 (348)
T ss_dssp             HHHCCTTCEEEEEECS---HHHHHHH---HHHHHTTCEEEEEE--CC-TTCCCCTTTS----CCSSCSEEEEESEETTTT
T ss_pred             Hhcccccccceeecch---HHHHHHH---HHHHhcCccccccc--cc-CCCccccccc----cccCCCeeEEEecchhhh
Confidence            9999999999988643   2221111   11223343333333  32 2233444332    234788888874433  3


Q ss_pred             CCCChHHHHHHHHHhC--CEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHh
Q 013217          182 RDFDYPRMRQIADAVG--ALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAI  258 (447)
Q Consensus       182 ~~~~~~~i~~ia~~~g--~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i  258 (447)
                      ...|+++|.++|++++  +++++|++++.|..+.+...+   ++|++++|.||+|+||+| |++++++      +..+++
T Consensus       135 ~~~~i~~i~~~~~~~~~~~l~~vDavss~g~~~i~~d~~---~iD~~~~~sqK~l~gppG~~~v~~s~------~~le~~  205 (348)
T d1iuga_         135 ALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAM---GVDAAASGSQKGLMCPPGLGFVALSP------RALERL  205 (348)
T ss_dssp             EECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGG---TCSEEEEESSSTTCCCSCEEEEEECH------HHHHTC
T ss_pred             hhccHHHHHHHHHhhhccceeechhhhcccccccccccc---cCCEEEeccccceecCCceeeeeech------HHHhhh
Confidence            3889999999999985  889999999888765544433   489999999999999999 9999987      333332


Q ss_pred             h-------------hccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCe-e
Q 013217          259 N-------------NAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNH-L  324 (447)
Q Consensus       259 ~-------------~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~-~  324 (447)
                      .             ......+.+||+.+.+.++..|++++... +.++.++.......+...+++.|++..... .++ +
T Consensus       206 ~~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~-~s~~v  283 (348)
T d1iuga_         206 KPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEHLALKAWQNALLYGVGEEGGLRPVPKR-FSPAV  283 (348)
T ss_dssp             CCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHTTCEESCSS-BCTTC
T ss_pred             cccccccchhhhhhhhccCcccccccchHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHhhhhhhhhhccChhh-cCCeE
Confidence            2             11122345689999999999999987754 445555444445555666666898876542 232 2


Q ss_pred             EEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          325 VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       325 ~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      ..+.+ +.+++..++.+.|.++||.+..+.     .+.....+|||+....+    .+|++++.+.|+++|+.
T Consensus       284 ~~~~~-P~g~~~~~~~~~l~~~gi~i~~G~-----~~l~~~~~RIg~mG~~~----~~d~~~~~~~l~~~l~~  346 (348)
T d1iuga_         284 AAFYL-PEGVPYARVKEAFAQRGAVIAGGQ-----GPLKGKVFRLSLMGAYD----RYEALGVAGMFREVLEE  346 (348)
T ss_dssp             EEEEC-CTTCCHHHHHHHHHTTTEECEECC-----GGGTTTEEEECCCSSCC----HHHHHHHHHHHHHHHHH
T ss_pred             EEEEC-CCCCCHHHHHHHHHHCCeEEEcCc-----cccCCCEEEEeCCCCCC----HHHHHHHHHHHHHHHHH
Confidence            33333 457889999999999999986542     12334579999887776    99999999999998874

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.95  E-value=9.9e-26  Score=219.64  Aligned_cols=336  Identities=13%  Similarity=0.066  Sum_probs=232.0

Q ss_pred             cCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHH
Q 013217           21 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  100 (447)
Q Consensus        21 ~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~  100 (447)
                      +.+.++|++..+++.|++||.....+           +.+.++.+.++ .+++.+++++|++..+.  .+...|||.++.
T Consensus        17 ~~~l~~PGP~~~~~~V~~Am~~~~~~-----------hr~~ef~~i~~-~~r~~L~~ll~~~~~~~--i~~~gsgT~a~e   82 (388)
T d2ch1a1          17 EKIMMGPGPSNCSKRVLTAMTNTVLS-----------NFHAELFRTMD-EVKDGLRYIFQTENRAT--MCVSGSAHAGME   82 (388)
T ss_dssp             CCBCCSSSSCCCCHHHHHHTTSCCCC-----------TTCHHHHHHHH-HHHHHHHHHHTCCCSCE--EEESSCHHHHHH
T ss_pred             cceeeeCCCCCCCHHHHHHhCcCCCC-----------CCCHHHHHHHH-HHHHHHHHHhCCCCCeE--EEEcCcHHHHHH
Confidence            45778999999999999998643322           13455566554 78899999999975432  344567789999


Q ss_pred             HHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCC
Q 013217          101 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY  180 (447)
Q Consensus       101 ~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~  180 (447)
                      +++.+++.+|+++++....+.+.....      .....+.  ..+.+... +....+.++++......+++++.++..++
T Consensus        83 a~~~~l~~~~~~vl~~~~g~~~~~~~~------~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~t  153 (388)
T d2ch1a1          83 AMLSNLLEEGDRVLIAVNGIWAERAVE------MSERYGA--DVRTIEGP-PDRPFSLETLARAIELHQPKCLFLTHGDS  153 (388)
T ss_dssp             HHHHHHCCTTCEEEEEESSHHHHHHHH------HHHHTTC--EEEEEECC-TTSCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred             HHHHHhccccccccccccccccccchh------hhhhhcc--cccccccc-cccccchhhhhhhhccCCcceeeeeeccc
Confidence            999999999999998875443331110      1122233  22233333 34568888888887777999998874333


Q ss_pred             C-C-CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHH
Q 013217          181 P-R-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA  257 (447)
Q Consensus       181 ~-~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~  257 (447)
                      . + ..|+++|.++|+++|+++++|++|+.|....++..+   ++|++++|.||++.||.| |+++.++.      ..+.
T Consensus       154 ~tG~~~~~~~i~~~~~~~~~~~~vD~~ss~g~~pid~~~~---~~d~~~~s~~K~~~gp~G~g~~~~~~~------~~~~  224 (388)
T d2ch1a1         154 SSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKW---EIDAVYTGAQKVLGAPPGITPISISPK------ALDV  224 (388)
T ss_dssp             TTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTT---TCCEEECCCC-CCCCCSSCEEEEECHH------HHHH
T ss_pred             ccccccchhhhcchhccccceeeeeeeecccccccchhcc---CceEEEEccccccCCCCeEEEEeccHH------HHHh
Confidence            3 3 789999999999999999999999999876655444   489999999999999999 88888763      2222


Q ss_pred             hhh----------------------ccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEe
Q 013217          258 INN----------------------AVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKL  315 (447)
Q Consensus       258 i~~----------------------~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~  315 (447)
                      ...                      ...+.+.+++....+.++..+++.+...+.....++..+....+...+...++..
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (388)
T d2ch1a1         225 IRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDI  304 (388)
T ss_dssp             HHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCB
T ss_pred             hhcccCccccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhccccc
Confidence            111                      1112345678888888888888877655666666666666666777776656554


Q ss_pred             eeCCC--CC-eeEEecCCCCCCCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEec-CccccCCCCHHHHHHHHHH
Q 013217          316 VSGGS--DN-HLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGS-PAMTTRGFSEKEFVAIADF  390 (447)
Q Consensus       316 ~~~~~--~~-~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~-~~~~~~g~~~~di~~l~~~  390 (447)
                      .....  .+ ....+.+ +.++++.++...| +++||.+..+.-     ....+.+|||+ +.+++    +|||+++.++
T Consensus       305 ~~~~~~~rs~~v~~~~~-p~g~~~~~l~~~l~~~~gI~v~~G~~-----~~~~~~~RIs~~g~~~t----~edI~~ll~a  374 (388)
T d2ch1a1         305 FVKDPRHRLPTVTGIMI-PKGVDWWKVSQYAMNNFSLEVQGGLG-----PTFGKAWRVGIMGECST----VQKIQFYLYG  374 (388)
T ss_dssp             SSCSGGGBCTTEEEEEC-CTTCCHHHHHHHHHHHHCBCCBCCCG-----GGTTTEEEEECCGGGCS----HHHHHHHHHH
T ss_pred             ccCCHHHhCCeEEEEEC-CCCCCHHHHHHHHhhcCCEEEeCCCc-----cccCCEEEEcCCcCCCC----HHHHHHHHHH
Confidence            43211  12 2333444 3478888887776 567999865421     12345799995 56677    8999999999


Q ss_pred             HHHHHHHH
Q 013217          391 IHEGVEIT  398 (447)
Q Consensus       391 i~~~l~~~  398 (447)
                      |+++|+..
T Consensus       375 lke~L~~~  382 (388)
T d2ch1a1         375 FKESLKAT  382 (388)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99999853

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1.3e-25  Score=218.77  Aligned_cols=329  Identities=19%  Similarity=0.219  Sum_probs=228.8

Q ss_pred             cCCCCC----CHHHHHHHhhhhhccCCCCCCCCcccCc-hhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHH
Q 013217           27 ASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE  101 (447)
Q Consensus        27 ~~~n~~----~~~v~~a~~~~~~~~~~~g~~~~~~~~g-~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~  101 (447)
                      +|.+|+    .|.|+++....+. +|..++.+.|...| .+...++|    +.+++++|.+.     .+.++||+.||..
T Consensus        51 ~s~dYLGl~~hp~v~~a~~~a~~-~~g~~~~~sr~~~g~~~~~~~lE----~~lA~~~g~e~-----al~~~SG~~An~~  120 (401)
T d1fc4a_          51 CANNYLGLANHPDLIAAAKAGMD-SHGFGMASVRFICGTQDSHKELE----QKLAAFLGMED-----AILYSSCFDANGG  120 (401)
T ss_dssp             CCSCTTSCTTCHHHHHHHHHHHH-HHCSCCCSCHHHHCCBHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHT
T ss_pred             EccccccccCCHHHHHHHHHHHH-HhCCCcccceeeccCcHHHHHHH----HHHHHhhcCCc-----eEEecchhhhhHH
Confidence            677775    6999999888764 56677777765444 34455666    57889999885     3456999999999


Q ss_pred             HHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh-----CCcEEEEc
Q 013217          102 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIAG  176 (447)
Q Consensus       102 ~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~-----~~klii~~  176 (447)
                      ++.++.+++|.|+.....|.+++.        .+...+.  +...++      ..|+++++++++..     +..+|++.
T Consensus       121 ~i~~l~~~~d~i~~d~~~h~s~~~--------G~~~~~a--~~~~~~------~~d~~~le~~~~~~~~~~~~~~liv~e  184 (401)
T d1fc4a_         121 LFETLLGAEDAIISDALNHASIID--------GVRLCKA--KRYRYA------NNDMQELEARLKEAREAGARHVLIATD  184 (401)
T ss_dssp             THHHHCCTTCEEEEETTCCHHHHH--------HHHTSCS--EEEEEC------TTCHHHHHHHHHHHHHTTCSSEEEEEE
T ss_pred             HHHHhcCCCcEEEeCCcchHHHHc--------cccccCc--eEEEEc------CCChHHHHHHHHHhhhcccCceEEEEc
Confidence            999999999999998887766532        2223333  222322      24677777665432     22355554


Q ss_pred             C--CCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccC-----CCCCCcccEEEeCCCcccCCCCCceEEeecCCc
Q 013217          177 A--SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVV-----ADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPV  249 (447)
Q Consensus       177 ~--~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-----~~~~~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~  249 (447)
                      +  |..+...|+++|.++|++||+++++|++|+.|.+.....     ....+..|++++|++|.|+|+.||++.+++   
T Consensus       185 gv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~~Gg~v~g~~---  261 (401)
T d1fc4a_         185 GVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARK---  261 (401)
T ss_dssp             SEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSCEEEEECH---
T ss_pred             CCCCCCCchhhhhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccccCCcccccCCH---
Confidence            2  222337799999999999999999999999887654211     111235899999999999999999999988   


Q ss_pred             chhhHHHHhhhccCCCC-CCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEec
Q 013217          250 LGVELESAINNAVFPGL-QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVD  328 (447)
Q Consensus       250 ~~~~~~~~i~~~~~~~~-~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~  328 (447)
                         ++.+.+.....+.. .+++++...++...+++....  .+++.+++.++.+++++.+.+.|+.+..  ++++++.+.
T Consensus       262 ---~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~~~--~~~~~~~l~~~~~~~~~~l~~~g~~~~~--~~~pIv~v~  334 (401)
T d1fc4a_         262 ---EVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEA--GSELRDRLWANARQFREQMSAAGFTLAG--ADHAIIPVM  334 (401)
T ss_dssp             ---HHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTTCCBCC--SSSSEEEEE
T ss_pred             ---HHHHHHHcCChhhhhcCCCCHHHHHHHHhhhccccc--CHHHHHHHHHHHHHHHhhhcccCCccCC--CCCCEEEEE
Confidence               67776654322222 223344444455556665543  3567899999999999999999887654  345555454


Q ss_pred             CCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          329 LRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       329 ~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      +... ....++.+.|.++||.++....|.  .|...++||+++++.+|    ++||++++++|+++.++.
T Consensus       335 ~~~~-~~a~~~~~~L~~~Gi~v~~i~~Pt--Vp~g~~~lRi~~~a~hT----~edId~~v~al~ev~~~l  397 (401)
T d1fc4a_         335 LGDA-VVAQKFARELQKEGIYVTGFFYPV--VPKGQARIRTQMSAAHT----PEQITRAVEAFTRIGKQL  397 (401)
T ss_dssp             EECH-HHHHHHHHHHHHTTEECCEECTTS--SCTTCEEEEEECCTTCC----HHHHHHHHHHHHHHHHHT
T ss_pred             ECCH-HHHHHHHHHHHHCCceEEeECCCC--CCCCCceEEEEECCCCC----HHHHHHHHHHHHHHHHHh
Confidence            4321 124468888999999987543332  23445689999998888    999999999999987753

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=99.94  E-value=1e-25  Score=220.02  Aligned_cols=353  Identities=14%  Similarity=0.133  Sum_probs=227.2

Q ss_pred             HHHHHHHHHHHHh-hcCeeEecCCC--CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCC
Q 013217            7 EVCEIITKEKERQ-FKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE   83 (447)
Q Consensus         7 ~~~~~~~~e~~~~-~~~i~l~~~~n--~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~   83 (447)
                      .-|+.+.++.+.+ ++-|+|..++.  ++|+.|++++.+.+.+.. .||+.     |.   .++.+.+.+++++.+|.+.
T Consensus        17 ~k~~~~~~~~~~~g~~vi~l~~g~pdf~~p~~v~~al~~~~~~~~-~~Y~~-----g~---~~Lr~aia~~~~~~~g~~~   87 (394)
T d1c7na_          17 LKWDLMYSQNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETV-LGYTG-----PT---EEYKKTVKKWMKDRHQWDI   87 (394)
T ss_dssp             HHHHHHHHHCTTCCTTCCCCCSSSCSSCCCHHHHHHHHHHHHHCC-CSSBC-----CC---HHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHhHhcCCCeEEccCCCCCCCCCHHHHHHHHHHHhCCC-cCCCC-----CC---HHHHHHHHHHHHHhcCCCC
Confidence            3455666544333 35588876665  458999999988876532 35542     21   3566667788888888763


Q ss_pred             CccceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC--CCCCCCCHHH
Q 013217           84 NKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD--ESTGLVDYDM  160 (447)
Q Consensus        84 ~~~~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~id~~~  160 (447)
                      +.  -+|.+|+|+ +++..++.++++|||+|++.+|.+.++..        .+...|.  +.+.++..  ...+.+|.+.
T Consensus        88 ~~--~~I~vt~G~~~al~~~~~~~~~pgd~vi~~~p~~~~~~~--------~~~~~g~--~~v~~~~~~~~~~~~~d~~~  155 (394)
T d1c7na_          88 QT--DWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFM--------AIKNQER--KIIECELLEKDGYYTIDFQK  155 (394)
T ss_dssp             CG--GGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHH--------HHHTTTC--EEEECCCEEETTEEECCHHH
T ss_pred             CC--cceEeeccchhhhhhhhccccccccccccccCcccchhh--------HHhhhhh--cccccccccccccccchhhh
Confidence            21  145568887 89999999999999999999988766532        2223343  44443332  2335689999


Q ss_pred             HHHHhhhhCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-------cccEEEe
Q 013217          161 LEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-------YCDVVTT  228 (447)
Q Consensus       161 l~~~~~~~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-------~~Di~~~  228 (447)
                      ++.++...++++++++.|+||+  ..+   +++|.++|++++++||+|+++ ..+++.+....+..       ..-+++.
T Consensus       156 ~~~~~~~~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y-~~~~~~~~~~~~~~~~~~~~~~~~i~~~  234 (394)
T d1c7na_         156 LEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIH-FDLIMPGYEHTVFQSIDEQLADKTITFT  234 (394)
T ss_dssp             HHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTT-TTCBCTTCCCCCGGGSCHHHHTTEEEEE
T ss_pred             hhhhhccccceEEEecccccccceeccHHHhhhhhccccccceeEeccccc-cccccCCccccchhhhhcccccceeecc
Confidence            9988866578999999899987  444   577888999999999999996 55555443222211       1337889


Q ss_pred             CCCccc--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHH
Q 013217          229 TTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALAS  306 (447)
Q Consensus       229 s~~K~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~  306 (447)
                      |++|++  +|+|.|++++.++     .+.+.+.........+.......++...+.... ....+++.+...++.+.+.+
T Consensus       235 s~SK~~~~~G~R~g~~~~~~~-----~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  308 (394)
T d1c7na_         235 APSKTFNIAGMGMSNIIIKNP-----DIRERFTKSRDATSGMPFTTLGYKACEICYKEC-GKWLDGCIKVIDKNQRIVKD  308 (394)
T ss_dssp             CSHHHHTCGGGCCEEEECCCH-----HHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccCh-----hhhhhhhhhhhhccccccccccchhhhhhhcch-hhhhcccccccchhhhhhhh
Confidence            999975  6889888887763     565555443222112222332323322233222 23345666666677777777


Q ss_pred             HHHHC--CcEeeeCCCCCeeEEecCCCCCCCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHH
Q 013217          307 RLVEL--GYKLVSGGSDNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKE  383 (447)
Q Consensus       307 ~L~~~--g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~d  383 (447)
                      .++..  ++.+..+ ..++++|++++..+.+..++.+.| +++||.+..+...+.   ..++.+||++.  ++    +++
T Consensus       309 ~l~~~~~~~~~~~p-~g~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~---~~~~~iRis~~--~~----~e~  378 (394)
T d1c7na_         309 FFEVNHPEIKAPLI-EGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGD---GGIGFERINLA--AP----SSV  378 (394)
T ss_dssp             HHHHHCTTSBCCCC-SBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCG---GGTTEEEEECC--SC----HHH
T ss_pred             hhhccccceeecCC-CceeEEEEECCCCCCCHHHHHHHHHHhCCEEEEcchhhCC---CCCCEEEEEEe--CC----HHH
Confidence            77663  5554432 346778999876677888876655 677999865433222   23458999863  33    778


Q ss_pred             HHHHHHHHHHHHHH
Q 013217          384 FVAIADFIHEGVEI  397 (447)
Q Consensus       384 i~~l~~~i~~~l~~  397 (447)
                      +++..+.|+++++.
T Consensus       379 i~eal~rl~~~l~~  392 (394)
T d1c7na_         379 IQESLERLNKALKD  392 (394)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            88888888887764

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.94  E-value=5.7e-26  Score=220.46  Aligned_cols=322  Identities=13%  Similarity=0.125  Sum_probs=219.3

Q ss_pred             CCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh-c
Q 013217           29 ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-L  107 (447)
Q Consensus        29 ~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al-~  107 (447)
                      .+.++++-++++.+.+.+.+         +...+.++++|    +++++++|.+.     .+.++|||+|+.+++.++ +
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~---------~~~G~~v~~~E----~~la~~~g~~~-----ai~~~sgt~Al~~al~al~~   68 (376)
T d1mdoa_           7 RPAMGAEELAAVKTVLDSGW---------ITTGPKNQELE----AAFCRLTGNQY-----AVAVSSATAGMHIALMALGI   68 (376)
T ss_dssp             CCCCCHHHHHHHHHHHHHTC---------CSSSHHHHHHH----HHHHHHHCCSE-----EEEESCHHHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHHHHHhcCC---------CcCCHHHHHHH----HHHHHHHCcCe-----EEEeCCHHHHHHHHHHHhCC
Confidence            45667777888888887643         22235678888    68999999975     355689999999999999 8


Q ss_pred             CCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCCCCChH
Q 013217          108 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYP  187 (447)
Q Consensus       108 ~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~~~~~~  187 (447)
                      +|||+|+++++++.+...        .+...|.  +++.++++++++.+|+++|++++++ +|++|++.+ .++...|++
T Consensus        69 ~~gdeVi~~~~~~~~~~~--------ai~~~g~--~pv~~d~~~~~~~~d~~~l~~~i~~-~tkaIi~~h-~~G~~~~~~  136 (376)
T d1mdoa_          69 GEGDEVITPSMTWVSTLN--------MIVLLGA--NPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIPVH-YAGAPADLD  136 (376)
T ss_dssp             CTTCEEEEESSSCHHHHH--------HHHHTTC--EEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCBC-GGGCCCCHH
T ss_pred             CCCCEEEEeccccccccc--------chhcccc--ceeeecccccccCCCHHHHHHhcCC-CCeEEEEeC-CCCCccchh
Confidence            999999999988876643        3344554  6777888888899999999999988 899988763 455578999


Q ss_pred             HHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCceEEeecCCcchhhHHHHhhhccCCC--
Q 013217          188 RMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPG--  265 (447)
Q Consensus       188 ~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~--  265 (447)
                      +|.++|+++|+++|+|+||+.|....+.....+ +..+++++.+|.++++.||+++++++     ++.+++......+  
T Consensus       137 ~i~~i~~~~~i~vIeD~a~a~g~~~~~~~~g~~-g~~~~Sf~~~K~l~~g~GG~i~t~~~-----~l~~~~~~~~~~g~~  210 (376)
T d1mdoa_         137 AIYALGERYGIPVIEDAAHATGTSYKGRHIGAR-GTAIFSFHAIKNITCAEGGIVVTDNP-----QFADKLRSLKFHGLG  210 (376)
T ss_dssp             HHHHHHHHHTCCBCEECTTCTTCEETTEETTSS-SEEEEECCTTSSSCSSSCEEEEESCH-----HHHHHHHHHTBTTEE
T ss_pred             HHHHHHHhcCceEEeccchhccCeeCCeecccc-cCccccCCCcCCCCCCCCCEEEEech-----hHHHHHHhhcccCCc
Confidence            999999999999999999999876654333222 23455566679999889999999885     5655554322211  


Q ss_pred             ---------------------CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeC-CCC--
Q 013217          266 ---------------------LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSG-GSD--  321 (447)
Q Consensus       266 ---------------------~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~--  321 (447)
                                           ..... ....+++  ++.++  ..+++..++..++++.+.+.|.+..+..... ..+  
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~g~n~~~-~~~~Aai--~~~qL--~~~~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~  285 (376)
T d1mdoa_         211 VDAWDRQSGGRAPQAEVLAPGYKYNL-PDLNAAI--ALAQL--QKLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHI  285 (376)
T ss_dssp             CC-----------CCEESSCCCBCCC-CHHHHHH--HHHHH--HTHHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEE
T ss_pred             ccccccccccccccccchhccccccc-chhhhhh--hhhhh--hhhhHHHHHHhhhhhhhhhhccccccccccccccccc
Confidence                                 11111 1122222  22222  3466778888999999999998854432221 111  


Q ss_pred             -C-eeEEe--cCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCC----------C------CCCCeEEEecCccccCCCCH
Q 013217          322 -N-HLVLV--DLRPMGIDGARVEKILDMASITLNKNSVPGDKS----------A------LVPGGIRIGSPAMTTRGFSE  381 (447)
Q Consensus       322 -~-~~~~v--~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~----------~------~~~~~iRig~~~~~~~g~~~  381 (447)
                       + +.++.  +....+.+.+++.+.|.+.||.++..+.|.+..          .      .....|.|.++.    +|++
T Consensus       286 ~~~~~~~~~~~~~~~~~~Rd~l~~~L~~~gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~----~lt~  361 (376)
T d1mdoa_         286 HAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFP----DMTE  361 (376)
T ss_dssp             CCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCT----TCCH
T ss_pred             ccccccccccccccchhhHHHHHHHHHHCCCCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEEEccCCC----CCCH
Confidence             1 11122  211123456789999999999987654332110          0      012346665443    4569


Q ss_pred             HHHHHHHHHHHHHH
Q 013217          382 KEFVAIADFIHEGV  395 (447)
Q Consensus       382 ~di~~l~~~i~~~l  395 (447)
                      +|++++++.|++++
T Consensus       362 ~ei~~I~~~i~~i~  375 (376)
T d1mdoa_         362 SDFDRVITALHQIA  375 (376)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998865

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=7.3e-25  Score=212.29  Aligned_cols=327  Identities=15%  Similarity=0.145  Sum_probs=230.8

Q ss_pred             ecCCCCC----CHHHHHHHhhhhhccCCCCCCCCcccCc-hhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHH
Q 013217           26 IASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  100 (447)
Q Consensus        26 ~~~~n~~----~~~v~~a~~~~~~~~~~~g~~~~~~~~g-~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~  100 (447)
                      .+|.+|+    .|.++++....+. +|..|..++|...| .+...++|    +++++++|.+.     .+.++||+.||.
T Consensus        43 f~s~dYLGl~~~p~v~~a~~~a~~-~~G~~~~~sr~~~g~~~~~~~lE----~~LA~~~g~e~-----al~~~SG~~an~  112 (383)
T d1bs0a_          43 FSSNDYLGLSHHPQIIRAWQQGAE-QFGIGSGGSGHVSGYSVVHQALE----EELAEWLGYSR-----ALLFISGFAANQ  112 (383)
T ss_dssp             CSCCCTTSGGGCHHHHHHHHHHHH-HHCSCCCSBTTTTCCCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHH
T ss_pred             EEcccccccCCCHHHHHHHHHHHH-HhCCCCCccccccCcchHHHHHH----HHHHHhcCCCc-----eEEecccchhhH
Confidence            4677776    6899998887765 57788888876555 45667787    58899999885     355699999999


Q ss_pred             HHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhC--CcEEEEcC-
Q 013217          101 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR--PKLIIAGA-  177 (447)
Q Consensus       101 ~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~--~klii~~~-  177 (447)
                      .++.++..++|.|+.....|.+.+.        .+..++.  ..+.++      ..|++++++.+...+  .++|++.. 
T Consensus       113 ~~i~al~~~~d~v~~d~~~h~si~~--------g~~~~~~--~~~~~~------hnd~~~le~~l~~~~~~~~~vv~e~v  176 (383)
T d1bs0a_         113 AVIAAMMAKEDRIAADRLSHASLLE--------AASLSPS--QLRRFA------HNDVTHLARLLASPCPGQQMVVTEGV  176 (383)
T ss_dssp             HHHHHHCCTTCEEEEETTCCHHHHH--------HHHTSSS--EEEEEC------TTCHHHHHHHHHSCCSSCEEEEEESB
T ss_pred             HHHHhhcCCCceEEeeccccHHHhh--------ccccCCC--cceEec------chHHHHHHHHhcccCCCceEEEecCC
Confidence            9999999999999998877655432        2233333  334443      368899998886533  34555552 


Q ss_pred             -CCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCC--CCCC-cccEEEeCCCcccCCCCCceEEeecCCcchhh
Q 013217          178 -SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVE  253 (447)
Q Consensus       178 -~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~--~~~~-~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~  253 (447)
                       +..+...|+++|.++|++||+++++|++|+.|.+..+..-  .... ..|+++.++.|.+ |..||++.++.      +
T Consensus       177 ~s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~-g~~Gg~v~~~~------~  249 (383)
T d1bs0a_         177 FSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGF-GVSGAAVLCSS------T  249 (383)
T ss_dssp             CTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTT-SSCCEEEEECH------H
T ss_pred             CCCCCcccchhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCCccccccccccccc-cccccccccch------h
Confidence             3334488999999999999999999999998876543210  0001 2567888999986 45678888887      6


Q ss_pred             HHHHhhhccCCCCCC-CCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCC
Q 013217          254 LESAINNAVFPGLQG-GPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPM  332 (447)
Q Consensus       254 ~~~~i~~~~~~~~~g-~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~  332 (447)
                      ..+.+.....+...+ ++++...+++..+++.......+...++..++..++.+.|.+.|+.+..  ++++++.+-+...
T Consensus       250 ~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~~~~--~~s~Ii~v~~g~~  327 (383)
T d1bs0a_         250 VADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLAD--SCSAIQPLIVGDN  327 (383)
T ss_dssp             HHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEECS--CCSSBCCEEEESH
T ss_pred             HHHHHHhhchhhhhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCccCC--CCCCEEEEEECCH
Confidence            666665432222222 3344555666667777766666778888999999999999999987654  3355443333221


Q ss_pred             CCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          333 GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       333 ~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                       ....++.+.|.++||.++....|-  .|...+++|+++++.+|    ++||++++++|+.+
T Consensus       328 -~~a~~~~~~L~~~Gi~v~~~~~Pt--Vp~g~~~lRi~~~a~ht----~edid~l~~~L~~~  382 (383)
T d1bs0a_         328 -SRALQLAEKLRQQGCWVTAIRPPT--VPAGTARLRLTLTAAHE----MQDIDRLLEVLHGN  382 (383)
T ss_dssp             -HHHHHHHHHHHHTTEECCEECTTS--SCTTCEEECCBCCTTCC----HHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHCCceEEEEcCCC--CCCCCceEEEEeCCCCC----HHHHHHHHHHHHhc
Confidence             134578889999999987643332  23445689999999988    99999999998753

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.93  E-value=3.8e-25  Score=215.98  Aligned_cols=357  Identities=16%  Similarity=0.085  Sum_probs=221.1

Q ss_pred             HHHHHHH--HHHHHh-hcCeeEecCCC-----CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHH
Q 013217            7 EVCEIIT--KEKERQ-FKSLELIASEN-----FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA   78 (447)
Q Consensus         7 ~~~~~~~--~e~~~~-~~~i~l~~~~n-----~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~   78 (447)
                      .|++++.  +|.+.+ ++-|+|..++.     .+|+.+++++...+... ..+|+..      +...++.+...+++.+.
T Consensus        14 ~ir~i~~~a~~l~~~G~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~~~-~~~Y~~~------~G~~~LR~aia~~~~~~   86 (395)
T d1xi9a_          14 AIRDVVLPARELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEG-HNYYGDS------EGLPELRKAIVEREKRK   86 (395)
T ss_dssp             -------CHHHHHHTTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTT-CCSCCCT------TCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCeEECCCCCCCCCCCCCCHHHHHHHHHHHhcC-CCCCCCC------CCCHHHHHHHHHhhhhc
Confidence            3555554  333332 34588876653     36789999998877542 1234433      22345555556788888


Q ss_pred             cCCCCCccceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC-CCCCCC
Q 013217           79 FNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-ESTGLV  156 (447)
Q Consensus        79 ~g~~~~~~~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~i  156 (447)
                      +|.+.+.  -+|.+++|+ +++..++.+++++||+|++.+|.|..+..        .+...|.  +++.++.. .+++.+
T Consensus        87 ~g~~~~~--~~i~i~~G~~~~~~~~~~~~~~~Gd~vlv~~P~y~~~~~--------~~~~~g~--~~v~v~~~~~~~~~~  154 (395)
T d1xi9a_          87 NGVDITP--DDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTG--------LVKFYGG--KPVEYRTIEEEDWQP  154 (395)
T ss_dssp             HCCCCCG--GGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHHTTC--EEEEEEEEGGGTSEE
T ss_pred             ccccccc--cccccccccchhhhhhhhhhcCCCCEEEEcCCccccchh--------hhhhcCC--EEEEEeccccccccc
Confidence            8876322  145567877 88999999999999999999998866532        3345565  44444433 246789


Q ss_pred             CHHHHHHHhhhhCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC---c-ccEEE
Q 013217          157 DYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK---Y-CDVVT  227 (447)
Q Consensus       157 d~~~l~~~~~~~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~---~-~Di~~  227 (447)
                      |++++++.+.+ ++++++++.|+||+  ..+   +++|.++|+++|++++.|+++ ..+.+.+....+..   . .-+++
T Consensus       155 d~~~~~~~~~~-~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~vi~~  232 (395)
T d1xi9a_         155 DIDDIRKKITD-RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIY-DLMTYEGEHISPGSLTKDVPVIVM  232 (395)
T ss_dssp             CHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTT-TTCBSSSCCCCHHHHCSSSCEEEE
T ss_pred             hHHHHHHhhcc-cccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEecccc-ccccccccccchhhcCCCCCEEEE
Confidence            99999999876 89999999888886  443   578889999999999999985 44444332222211   1 23778


Q ss_pred             eCCCccc--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHH
Q 013217          228 TTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA  305 (447)
Q Consensus       228 ~s~~K~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~  305 (447)
                      .|++|++  +|+|.|++++.........+.+....... ...+.+...++++ ..++.. ....+++..+.+.++++.+.
T Consensus       233 ~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~a~-~~~l~~-~~~~~~~~~~~~~~~~~~l~  309 (395)
T d1xi9a_         233 NGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLAR-IRLCPNTPAQFAA-IAGLTG-PMDYLKEYMKKLKERRDYIY  309 (395)
T ss_dssp             EESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHH-HTCCSCSHHHHHH-HHHHHS-CCHHHHHHHHHHHHHHHHHH
T ss_pred             eCcchhcccchhhcEeeEecCHHHHHHHHHHHHHHhhc-CCCCcCHHHHHHH-HHHhcC-CHHHHHHHHHHHHHHHHHHH
Confidence            9999986  58999998775432111112222111100 0112223333333 334443 23445777888889999999


Q ss_pred             HHHHHCCcEeeeCCCCCeeEEecCCCC-CCCHH-HHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHH
Q 013217          306 SRLVELGYKLVSGGSDNHLVLVDLRPM-GIDGA-RVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKE  383 (447)
Q Consensus       306 ~~L~~~g~~~~~~~~~~~~~~v~~~~~-~~~~~-~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~d  383 (447)
                      +.|.+.+...+..+..++++|++++.. ..+.. .+.+.|+++||.+.++...+   +..++.+||++.  ++    +++
T Consensus       310 ~~L~~~~~~~~~~p~gg~~~~~~l~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg---~~~~~~~Ris~~--~~----~e~  380 (395)
T d1xi9a_         310 KRLNEIPGISTTKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFG---EYGAGHFRAVFL--PP----IEI  380 (395)
T ss_dssp             HHHHTSTTEECCCCCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGC---GGGTTBEEEECC--SC----HHH
T ss_pred             HHHHhCCCceecCCCeeEEEeEECCCCCCCCHHHHHHHHHHhCCEEEEcChhhC---CCCCCEEEEEec--CC----HHH
Confidence            999987643333334567788887532 23444 45567788999985543222   122457999863  33    778


Q ss_pred             HHHHHHHHHHHHH
Q 013217          384 FVAIADFIHEGVE  396 (447)
Q Consensus       384 i~~l~~~i~~~l~  396 (447)
                      +++.++.|.++++
T Consensus       381 l~eal~rl~~~l~  393 (395)
T d1xi9a_         381 LEEAMDRFEKFMK  393 (395)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            8888888887775

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=6.9e-25  Score=212.16  Aligned_cols=333  Identities=17%  Similarity=0.142  Sum_probs=217.4

Q ss_pred             HHhhcCeeEecCCC--CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCC
Q 013217           17 ERQFKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLS   94 (447)
Q Consensus        17 ~~~~~~i~l~~~~n--~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~s   94 (447)
                      .+....|+|..+.+  ++|+.+++++.+.+.+.  .+|+..   .|   ..+++    +.+++.+++++++    |.+++
T Consensus        22 a~~~~~I~ls~g~p~~~~p~~i~~al~~~l~~~--~~Y~~~---~G---~~elr----~aiA~~~~~~~~~----Iiit~   85 (368)
T d1v2da_          22 AQRLGAVNLGQGFPSNPPPPFLLEAVRRALGRQ--DQYAPP---AG---LPALR----EALAEEFAVEPES----VVVTS   85 (368)
T ss_dssp             HHHHTCEECCCCSCSSCCCHHHHHHHHHHTTTS--CSCCCT---TC---CHHHH----HHHHHHHTSCGGG----EEEES
T ss_pred             hccCCCEEecCCCCCCCCCHHHHHHHHHHhhcc--cCCCCC---cC---CHHHH----HHHHhhcccCCcc----eeecc
Confidence            33446788865443  46899999998877542  345443   12   22343    5677889999864    34467


Q ss_pred             cH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEE
Q 013217           95 GS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI  173 (447)
Q Consensus        95 Gs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~kli  173 (447)
                      |+ +++..++.+++++||.|++.+|.|..+..        .....|.....++++.+.+++.+|++++++.+++ +++++
T Consensus        86 G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~~--------~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i  156 (368)
T d1v2da_          86 GATEALYVLLQSLVGPGDEVVVLEPFFDVYLP--------DAFLAGAKARLVRLDLTPEGFRLDLSALEKALTP-RTRAL  156 (368)
T ss_dssp             SHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTCEEEEEECEEETTEEECCHHHHHTTCCT-TEEEE
T ss_pred             chHHHHHHHhhccccccccccccCCcchhhhh--------HHHhcCCccceeccccccccccCCHHHHHHhhcc-CceEE
Confidence            66 89999999999999999999998776542        2334455445555554445678999999999987 78888


Q ss_pred             EEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC---CcccEEEeCCCcc--cCCCCCceEE
Q 013217          174 IAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KYCDVVTTTTHKS--LRGPRGGMIF  243 (447)
Q Consensus       174 i~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~---~~~Di~~~s~~K~--l~Gp~gG~i~  243 (447)
                      +++.++||+  ..+   +++|.++|+++|+++++|+++..... ....+...   ....+++.|++|.  ++|.|.|+++
T Consensus       157 ~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~  235 (368)
T d1v2da_         157 LLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIV  235 (368)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEE
T ss_pred             EEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhcc-cccccccccccccccceeeccccccccccccccccc
Confidence            888888886  444   78899999999999999998643322 21111110   0123555666664  4678889999


Q ss_pred             eecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCC
Q 013217          244 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-SPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDN  322 (447)
Q Consensus       244 ~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~  322 (447)
                      .++      ++.+.+.........++....+ .+.+.++.... ....+...+.+.++++.+.+.|++.|+++..+ ..+
T Consensus       236 ~~~------~~~~~~~~~~~~~~~~~~~~~q-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~p-~g~  307 (368)
T d1v2da_         236 GPK------EFMPRLAGMRQWTSFSAPTPLQ-AGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVP-EGT  307 (368)
T ss_dssp             CCT------TTHHHHHHHHHHHTSSCCHHHH-HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEECC-SBS
T ss_pred             ccc------cccchhhhhhhccccccccccc-cccccccccccchhhHHHHHHHHHHhhhhhhhhHHhcCcEEecC-Cce
Confidence            888      4555444322211122222222 22233433222 22346667778889999999999999988754 346


Q ss_pred             eeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          323 HLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       323 ~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      +++|++++  +.+   ..++|+++||.+.++...+.. ....+++|+++.  ++    ++++++.++.|+++|
T Consensus       308 ~~~~~~l~--~~~---~~~ll~~~gI~v~pg~~F~~~-~~~~~~iRis~~--~~----~e~i~~ai~rL~~~l  368 (368)
T d1v2da_         308 YFLMAELP--GWD---AFRLVEEARVALIPASAFYLE-DPPKDLFRFAFC--KT----EEELHLALERLGRVV  368 (368)
T ss_dssp             SEEEEECT--TCC---HHHHHHHTCEECEEGGGGCSS-SCCTTEEEEECC--SC----HHHHHHHHHHHHHHC
T ss_pred             eEEEEeCC--ccH---HHHHHHhCCEEEEechhhCCC-CCCCCEEEEEec--CC----HHHHHHHHHHHHHhC
Confidence            77888875  333   445688999999654322211 123568999863  34    788999988888764

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.93  E-value=2.9e-25  Score=217.50  Aligned_cols=330  Identities=15%  Similarity=0.103  Sum_probs=211.5

Q ss_pred             ecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHH
Q 013217           26 IASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA  105 (447)
Q Consensus        26 ~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~a  105 (447)
                      .++..++|..|++++.+++.+.+.  ++..+...+..+.+.+ +.+++++++++|++++++.+   +.++|+++..++..
T Consensus        33 ~as~g~~p~~v~~a~~~~l~~~~~--~~~~~~~~~~~~~~~~-e~~R~~iA~llga~~~ei~~---~~~~T~~~~~~~~~  106 (404)
T d1qz9a_          33 GNSLGARPVAALARAQAVIAEEWG--NGLIRSWNSAGWRDLS-ERLGNRLATLIGARDGEVVV---TDTTSINLFKVLSA  106 (404)
T ss_dssp             TTTSCCCBTTHHHHHHHHHHTCCC--CCGGGHHHHTSGGGHH-HHHHHHHHTTTTCCTTSEEE---CSCHHHHHHHHHHH
T ss_pred             CcccccCCHHHHHHHHHHHHHHhc--ccCcccccchhHHHHH-HHHHHHHHHHhCCCCCcEEE---ecCchHHHHHHhhh
Confidence            366678899999999998876543  3322211122223334 46789999999999887532   35556776655432


Q ss_pred             ------hcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCC
Q 013217          106 ------ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA  179 (447)
Q Consensus       106 ------l~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~  179 (447)
                            ...+|+.|++.+..+.......        ...+.......  ++ ..+..+.+.+++++++ +|++|+++..+
T Consensus       107 ~~~~~~~~~~~~~vi~~~~~~~~~~~~~--------~~~~~~~~~~~--~~-~~~~~~~~~~~~~i~~-~T~lV~i~~v~  174 (404)
T d1qz9a_         107 ALRVQATRSPERRVIVTETSNFPTDLYI--------AEGLADMLQQG--YT-LRLVDSPEELPQAIDQ-DTAVVMLTHVN  174 (404)
T ss_dssp             HHHHHHHHSTTCCEEEEETTSCHHHHHH--------HHHHHHHHCSS--CE-EEEESSGGGHHHHCST-TEEEEEEESBC
T ss_pred             hhhhhcccCCCcEEEEeccccchHHHHH--------Hhhhheeeeec--ee-ccccccchhHHHhcCC-CceEEEEeccc
Confidence                  2478999998876654432111        01111111111  11 2356788899999988 89999998443


Q ss_pred             C-CC-CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC--ceEEeecCCcchhhHH
Q 013217          180 Y-PR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG--GMIFFKKDPVLGVELE  255 (447)
Q Consensus       180 ~-~~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g--G~i~~~~~~~~~~~~~  255 (447)
                      + .+ .+|+++|+++|+++|+++++|++|+.|.+..++...   ++|++++|+|||+++|+|  |+++.++.      ..
T Consensus       175 ~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~~~~~~~~---~~d~~~~s~~K~~~~~~g~~g~~~~~~~------~~  245 (404)
T d1qz9a_         175 YKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQA---GADYAIGCTYKYLNGGPGSQAFVWVSPQ------LC  245 (404)
T ss_dssp             TTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHH---TCSEEEECSSSTTCCCTTCCCEEEECTT------TT
T ss_pred             ccccceecHHHHhccccccccceeEEeeccccccccccccc---cceEEEEechhhcccCCceEEEEEechh------hh
Confidence            3 34 889999999999999999999999999775543332   489999999999866554  56666653      21


Q ss_pred             HHhhhc----------------------cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHH---HHHHHH
Q 013217          256 SAINNA----------------------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL---ASRLVE  310 (447)
Q Consensus       256 ~~i~~~----------------------~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l---~~~L~~  310 (447)
                      +.+...                      ......++++......+..++......+.....++.......+   .+.+..
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~  325 (404)
T d1qz9a_         246 DLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCA  325 (404)
T ss_dssp             TTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHhhcc
Confidence            111100                      0001246667777777777777666555544444444444433   333333


Q ss_pred             -CCcEeeeCC-CCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEec-CccccCCCCHHHHHHH
Q 013217          311 -LGYKLVSGG-SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS-PAMTTRGFSEKEFVAI  387 (447)
Q Consensus       311 -~g~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~-~~~~~~g~~~~di~~l  387 (447)
                       .|++++++. ...+..++.+...  ++.++.+.|.++||.++..         .++.||+|+ |.+||    ++|++++
T Consensus       326 ~~~~~i~~p~~~~~r~~~vsf~~~--~~~~v~~~L~~~gi~~~~r---------~~~~lRiS~~h~ynt----~~did~~  390 (404)
T d1qz9a_         326 AHELTLVTPREHAKRGSHVSFEHP--EGYAVIQALIDRGVIGDYR---------EPRIMRFGFTPLYTT----FTEVWDA  390 (404)
T ss_dssp             TSCCEECSCSSGGGBCSEEEEECT--THHHHHHHHHTTTEECEEE---------TTTEEEEECCTTTCC----HHHHHHH
T ss_pred             CCCEEEECCCCccceeeEEEEecC--CHHHHHHHHHHCCCEEeec---------CCCeEEEECCCCCCC----HHHHHHH
Confidence             688887642 1222223333322  5788999999999976432         135899998 56898    9999999


Q ss_pred             HHHHHHHHHH
Q 013217          388 ADFIHEGVEI  397 (447)
Q Consensus       388 ~~~i~~~l~~  397 (447)
                      +++|+++|+.
T Consensus       391 ~~~L~~vl~~  400 (404)
T d1qz9a_         391 VQILGEILDR  400 (404)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999974

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=7.7e-24  Score=208.83  Aligned_cols=364  Identities=11%  Similarity=0.035  Sum_probs=239.5

Q ss_pred             HHHHHHHHHHHHHhhc-CeeEecC-CCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCC
Q 013217            6 PEVCEIITKEKERQFK-SLELIAS-ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE   83 (447)
Q Consensus         6 ~~~~~~~~~e~~~~~~-~i~l~~~-~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~   83 (447)
                      .+++++|.+|....-+ .++|... .++++|.+.+.|...++..+.    ..   ...+...++|..+..++++++|++.
T Consensus        38 ~~~~~~i~d~l~~dg~~~~n~asf~~t~~~~~~~~l~~~~~~~N~~----~~---~~~P~~~~lE~~~v~~la~L~~~p~  110 (450)
T d1pmma_          38 DVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWI----DK---EEYPQSAAIDLRCVNMVADLWHAPA  110 (450)
T ss_dssp             HHHHHHHHHHGGGSCCGGGBCSCCSCCCCCHHHHHHHHHTTTCBTT----CT---TTSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHhcCCC----Cc---ccCccHHHHHHHHHHHHHHHhCCCc
Confidence            3478899887644332 3566433 346789999998887765432    11   1123467899999999999999863


Q ss_pred             Ccc--ceeeecCCcHHHHHHHHHHhc-----------CCCC-EEEEecCCCCcccCCCccccccccccccceeEEEeccc
Q 013217           84 NKW--GVNVQPLSGSPANFEVYTAIL-----------KPHD-RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL  149 (447)
Q Consensus        84 ~~~--~~~v~~~sGs~a~~~~~~al~-----------~pgd-~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  149 (447)
                      ...  ..-+.+++||+||+.++.+..           .+++ .++++...|.+.        .+.+.+.|...+  .+++
T Consensus       111 ~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~--------~Kaa~~~gi~~~--~v~~  180 (450)
T d1pmma_         111 PKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICW--------HKFARYWDVELR--EIPM  180 (450)
T ss_dssp             CTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHH--------HHHHHHTTCEEE--ECCC
T ss_pred             cccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHH--------HHHHHHcCCCce--Eeee
Confidence            211  112333555688887776541           2333 355554333221        134556676444  4456


Q ss_pred             CCCCCCCCHHHHHHHhhhhCCcEEEEc-CCCCCC-CCChHHHHHHH------HHhCCEEEEehhhhccccccccC--CC-
Q 013217          150 DESTGLVDYDMLEKTAILFRPKLIIAG-ASAYPR-DFDYPRMRQIA------DAVGALLMMDMAHISGLVAASVV--AD-  218 (447)
Q Consensus       150 ~~~~~~id~~~l~~~~~~~~~klii~~-~~~~~~-~~~~~~i~~ia------~~~g~~livD~a~~~g~~~~~~~--~~-  218 (447)
                      +++++.+|+++|++++++ +|.+|+++ .+++.+ ..|+++|.++|      +++|+|++||+|++.+..+....  .. 
T Consensus       181 ~~~~~~~d~~~L~~~i~~-~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~  259 (450)
T d1pmma_         181 RPGQLFMDPKRMIEACDE-NTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWD  259 (450)
T ss_dssp             BTTBCSCCHHHHHHHCCT-TEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCS
T ss_pred             cCCCCcCcHHHHHHHhhh-CceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhh
Confidence            666799999999999988 88888776 344444 67888888775      45799999999976554432211  11 


Q ss_pred             -CCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhh---------ccCCCCCCCCcHHHHHHHHHHHHHhcC
Q 013217          219 -PFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINN---------AVFPGLQGGPHNHTIGGLAVCLKHAQS  287 (447)
Q Consensus       219 -~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~---------~~~~~~~g~p~~~~~aal~~al~~~~~  287 (447)
                       .+.++|.+++|+|||+.+|.| |+++++++     ........         ....+..++-....+.+++.+++.+..
T Consensus       260 ~~~~~aDSi~~s~HK~~~~p~g~g~l~~r~~-----~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~  334 (450)
T d1pmma_         260 FRLPRVKSISASGHKFGLAPLGCGWVIWRDE-----EALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGR  334 (450)
T ss_dssp             TTSTTEEEEEEETTTTTCCCSSCEEEEESSG-----GGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHHHH
T ss_pred             hcccceeEeecChhhccCCCCCeeEEEecCh-----hhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhhhH
Confidence             223799999999999999999 99999875     22111000         001122344444556667778887777


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHH-CCcEeeeCCC-CCee--EEecCCC---CCCCHHHHHHHHhhcCeEEccCCCCCCCC
Q 013217          288 PEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGS-DNHL--VLVDLRP---MGIDGARVEKILDMASITLNKNSVPGDKS  360 (447)
Q Consensus       288 ~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~-~~~~--~~v~~~~---~~~~~~~~~~~L~~~gI~v~~~~~p~~~~  360 (447)
                      .++++..++..+++++|.+.|++ .+++++.++. ...+  +.+.+.+   .+++..++.+.|.+.|+.+.....|.+. 
T Consensus       335 ~G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~~~~~~~~~~~~l~~~L~~~Gw~v~~~~~p~~~-  413 (450)
T d1pmma_         335 EGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEA-  413 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEECCTTTBSSEEEEEECTTCCCSSCHHHHHHHHHTTTCBCCEEECCTTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCCceEEEEEecCCcccCCCCHHHHHHHHHHcCCeeeccCcCCCc-
Confidence            88999999999999999999988 4688876422 2222  3333322   3456778999999999887654444322 


Q ss_pred             CCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          361 ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       361 ~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                       .....+|+.+...+|    +++++++++.|+++++..
T Consensus       414 -~~~~~lRvvv~~~~t----~e~~d~lv~dl~~~v~~l  446 (450)
T d1pmma_         414 -TDIVVMRIMCRRGFE----MDFAELLLEDYKASLKYL  446 (450)
T ss_dssp             -TTCEEEEEECCTTCC----HHHHHHHHHHHHHHHHHH
T ss_pred             -CCcEEEEEEccCCCC----HHHHHHHHHHHHHHHHHH
Confidence             123469998766555    899999999999888754

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=4.1e-24  Score=207.15  Aligned_cols=332  Identities=16%  Similarity=0.127  Sum_probs=217.5

Q ss_pred             hcCeeEecCCC--CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-
Q 013217           20 FKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-   96 (447)
Q Consensus        20 ~~~i~l~~~~n--~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-   96 (447)
                      ++-|+|..+++  .+|+.+++++...+.+.. .+|+..      +...++.+...+++.+.+|.+.+..  ++.+++|+ 
T Consensus        28 ~~vI~l~~G~p~~~~p~~i~~~~~~~~~~~~-~~Y~~~------~G~~~lR~aia~~~~~~~~~~~~~~--~i~~t~G~~   98 (375)
T d1o4sa_          28 EDVINLTAGEPDFPTPEPVVEEAVRFLQKGE-VKYTDP------RGIYELREGIAKRIGERYKKDISPD--QVVVTNGAK   98 (375)
T ss_dssp             CCCEECCCSSCSSCCCHHHHHHHHHHHTTCC-CCCCCT------TCCHHHHHHHHHHHHHHHTCCCCGG--GEEEESHHH
T ss_pred             CCeEECCCcCCCCCCCHHHHHHHHHHHhcCC-cCCCCC------cCCHHHHHHHHhhhhhccccccccc--cccccCcHH
Confidence            45689887766  357899999988776532 345433      2233555556678888888763322  44557776 


Q ss_pred             HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 013217           97 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG  176 (447)
Q Consensus        97 ~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~  176 (447)
                      +|+..++.++++|||+|++.+|.+..+..        .....+......+...+ +.+.+|.+.++..... ++++++++
T Consensus        99 ~al~~~~~~l~~~gd~vlv~~P~y~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~l~  168 (375)
T d1o4sa_          99 QALFNAFMALLDPGDEVIVFSPVWVSYIP--------QIILAGGTVNVVETFMS-KNFQPSLEEVEGLLVG-KTKAVLIN  168 (375)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTCEEEEEECCGG-GTTCCCHHHHHHTCCT-TEEEEEEE
T ss_pred             HHHHHHHHHHhCCCCEEEEccCccccchh--------hhhcccccccccccccc-ccccchhHHHHHhhcc-CccEEEEe
Confidence            89999999999999999999998776532        12233433333332222 4568899999887766 88999999


Q ss_pred             CCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCC---C--cccEEEeCCCccc--CCCCCceEEe
Q 013217          177 ASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K--YCDVVTTTTHKSL--RGPRGGMIFF  244 (447)
Q Consensus       177 ~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~---~--~~Di~~~s~~K~l--~Gp~gG~i~~  244 (447)
                      .|+||+  ..   .+++|.++|++|+++|++|+++. .+........++   +  ..-+++.|++|++  +|.|.|+++.
T Consensus       169 nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~~~  247 (375)
T d1o4sa_         169 SPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYD-SLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLIS  247 (375)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT-TSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEEC
T ss_pred             CCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhc-cccccccccccccccCCCCCEEEEeechhhccCCccccccccc
Confidence            889886  33   46788889999999999999753 333222111111   1  2348889999986  5889999999


Q ss_pred             ecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCee
Q 013217          245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHL  324 (447)
Q Consensus       245 ~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~  324 (447)
                      ++      +..+.+........... .....   ..+..... .......+.+.++++.+.+.|++.|+++..+ ..+++
T Consensus       248 ~~------~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~-~~~~~~~~~~~~r~~~~~~~l~~~g~~~~~p-~gg~f  315 (375)
T d1o4sa_         248 SE------KVATAVSKIQSHTTSCI-NTVAQ---YAALKALE-VDNSYMVQTFKERKNFVVERLKKMGVKFVEP-EGAFY  315 (375)
T ss_dssp             CH------HHHHHHHHHHHHHTCSC-CHHHH---HHHHHHTT-CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCC-SBSSE
T ss_pred             cc------cchhhhhhhhccccccc-cccch---hhhhhhcc-cchhhhHHHHHHHHHHHHHHHHhcCceEecC-CccEE
Confidence            88      55554443222111111 21111   11222222 2335556777888889999999999987653 45677


Q ss_pred             EEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          325 VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       325 ~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      +|+++..  -+.+.+.++|+++||.+.++...+     .+++||+++.  ++    ++++++..+.|+++++
T Consensus       316 ~~~~~~~--~~~~~~~~ll~~~gV~v~pG~~F~-----~~g~iRis~~--~~----~e~l~~al~rl~~~l~  374 (375)
T d1o4sa_         316 LFFKVRG--DDVKFCERLLEEKKVALVPGSAFL-----KPGFVRLSFA--TS----IERLTEALDRIEDFLN  374 (375)
T ss_dssp             EEEECSS--CHHHHHHHHHHHHCEECEEGGGGT-----CTTEEEEECC--SC----HHHHHHHHHHHHHHHT
T ss_pred             EEEECCC--CHHHHHHHHHHhCCEEEEEccccC-----CCCeEEEEEc--CC----HHHHHHHHHHHHHHhc
Confidence            8888754  234556667788999996543222     2458999863  34    7888888888888764

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.92  E-value=9.9e-25  Score=217.51  Aligned_cols=303  Identities=15%  Similarity=0.103  Sum_probs=200.0

Q ss_pred             HHHHHHHHcCCCCCccceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEeccc
Q 013217           71 CQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL  149 (447)
Q Consensus        71 ~~~~~~~~~g~~~~~~~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  149 (447)
                      ++++++++||++..     +.+++|| ++|.+++.++++|||+|++...+|.+++..+.       .+.+....+....+
T Consensus        71 ae~~~A~~~ga~~a-----~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~-------~l~~~~~~~~~~~~  138 (462)
T d1c4ka2          71 AEKHAARVYNADKT-----YFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSAL-------AMAGGRPVYLQTNR  138 (462)
T ss_dssp             HHHHHHHHTTCSEE-----EEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHT-------TTTCCEEEEECEEE
T ss_pred             HHHHHHHHhCCCeE-----EEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHHH-------HHhcCCceeeeccc
Confidence            34789999999863     3347887 67888899999999999999999877653331       12233334444344


Q ss_pred             CCCC-------CCCCHHHHHHHhhh--------hCCc-EEEEcCCCCCC-CCChHHHHHHHHHhCCEEEEehhhhccccc
Q 013217          150 DEST-------GLVDYDMLEKTAIL--------FRPK-LIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGLVA  212 (447)
Q Consensus       150 ~~~~-------~~id~~~l~~~~~~--------~~~k-lii~~~~~~~~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~  212 (447)
                      ++.+       ..++.+.+++.+..        .+|. ++++..+++.+ ..|+++|+++|+++|+++++|+||+.|...
T Consensus       139 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~~  218 (462)
T d1c4ka2         139 NPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQF  218 (462)
T ss_dssp             CTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGS
T ss_pred             ccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhccccc
Confidence            4322       13455555443321        1343 55555666666 789999999999999999999999988776


Q ss_pred             cccCCCC----------CCcccEEEeCCCcccCCCCCceEEeecCCcc----hhhHHHHhhhccCCCCCCCCcHHHHHHH
Q 013217          213 ASVVADP----------FKYCDVVTTTTHKSLRGPRGGMIFFKKDPVL----GVELESAINNAVFPGLQGGPHNHTIGGL  278 (447)
Q Consensus       213 ~~~~~~~----------~~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~----~~~~~~~i~~~~~~~~~g~p~~~~~aal  278 (447)
                      .+..+..          ..++|++++|+||+++++.+|.++..++...    ...-...+.........++|+...++++
T Consensus       219 ~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp~~~~~asl  298 (462)
T d1c4ka2         219 IPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAAL  298 (462)
T ss_dssp             SGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred             cCcCCcchhhccccccccCCccEEEEecCcccccccceEEEEeccccccccchhhhHHHHHHhhhhcccCCchHHHHHHH
Confidence            5543221          1246999999999998888866665443100    0000112222222223578899999999


Q ss_pred             HHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeee-----------------------------CC---------C
Q 013217          279 AVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVS-----------------------------GG---------S  320 (447)
Q Consensus       279 ~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-----------------------------~~---------~  320 (447)
                      .+|...+.....+++.++..++++++++++.+.+.....                             ++         .
T Consensus       299 ~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (462)
T d1c4ka2         299 DVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYG  378 (462)
T ss_dssp             HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCC
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchHhhhcccchhccCCcchhccccccC
Confidence            999888776666788899999999999999874211100                             00         0


Q ss_pred             CCee------EEecC----------CCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHH
Q 013217          321 DNHL------VLVDL----------RPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEF  384 (447)
Q Consensus       321 ~~~~------~~v~~----------~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di  384 (447)
                      +...      +.+..          ...++++.++.+.|+++||.+...         ....||+.++..+|    ++|+
T Consensus       379 ~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~~L~~~gI~~e~~---------~~~~i~~~~s~~~T----~edi  445 (462)
T d1c4ka2         379 DNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKS---------DLNSILFLMTPAET----PAKM  445 (462)
T ss_dssp             TTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEE---------CSSEEEEECCTTCC----HHHH
T ss_pred             ccceecccceeEEecCCccccccchhhcCCcHHHHHHHHHHcCCeeecc---------CCCeEEEEecCCCC----HHHH
Confidence            0000      11211          123567889999999999976432         23579999887777    9999


Q ss_pred             HHHHHHHHHHHHHH
Q 013217          385 VAIADFIHEGVEIT  398 (447)
Q Consensus       385 ~~l~~~i~~~l~~~  398 (447)
                      ++++++|.+.-+.+
T Consensus       446 d~li~aL~ei~r~~  459 (462)
T d1c4ka2         446 NNLITQLLQLQRLI  459 (462)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998876654

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=99.92  E-value=1.4e-23  Score=206.28  Aligned_cols=358  Identities=12%  Similarity=0.054  Sum_probs=227.5

Q ss_pred             CHHHHHHHHHHHHHhhcCeeEecCCC--CCCHHHHHHHhhhhhccC--CCCCCCCcccCchhHHHHHHHHHHHHHHHHcC
Q 013217            5 NPEVCEIITKEKERQFKSLELIASEN--FTSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFN   80 (447)
Q Consensus         5 ~~~~~~~~~~e~~~~~~~i~l~~~~n--~~~~~v~~a~~~~~~~~~--~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g   80 (447)
                      .+.++.-+.+ ...+.+.|+|-.++.  .+|+.+++++.+.+.+.-  ..+|+..      ....++.+...+++++.+|
T Consensus        12 ~~~~~~~~~~-~~~~~~~I~L~~G~Pd~~~p~~i~eal~~a~~~~~~~~~~Y~~~------~G~~~lReaiA~~~~~~~g   84 (418)
T d2r5ea1          12 TKSVWVEYIQ-LAAQYKPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRG------FGHPRLVQALSKLYSQLVD   84 (418)
T ss_dssp             CCCHHHHHHH-HHHHHCCEECSSSCCSSCCCHHHHHHHHHHHTCSCGGGGSCCCT------TCCHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHH-HhcCCCCEEccCCCCCCCCCHHHHHHHHHHHhCCCccCcCCCCC------CCCHHHHHHHHHHHHHHhC
Confidence            4445544433 333457799987765  257889999888765421  1234332      2223454455578888888


Q ss_pred             CC--CCccceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC------
Q 013217           81 LD--ENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE------  151 (447)
Q Consensus        81 ~~--~~~~~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------  151 (447)
                      .+  +.+   +|.+|+|+ +|+..+++++++|||.|++.+|.|+++..        .+...|.....+++..+.      
T Consensus        85 ~~~~p~~---~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~--------~~~~~g~~~~~v~~~~~~~~~~~~  153 (418)
T d2r5ea1          85 RTINPMT---EVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEP--------MVKAAGGIPRFIPLKPNKTGGTIS  153 (418)
T ss_dssp             SCCCTTT---SEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTCEEEEEECEESCCSSCEE
T ss_pred             CCCCccc---eEEEcCCCchhhhhhhhhccccccceeccccccchhhH--------HHHHcCCeEEEEEecccccccchh
Confidence            76  222   35568988 89999999999999999999998876532        233445433444433221      


Q ss_pred             -CCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC---C-
Q 013217          152 -STGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K-  221 (447)
Q Consensus       152 -~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~---~-  221 (447)
                       ..+.++++++.+.... ++++++++.++||+  ..+   +++|.++|+++|+++|+|+++ ..+...+....++   . 
T Consensus       154 ~~~~~~~~~~~~~~~~~-~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y-~~~~~~~~~~~s~~~~~~  231 (418)
T d2r5ea1         154 SADWVLDNNELEALFNE-KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVY-EHMVFEPFEHIRICTLPG  231 (418)
T ss_dssp             GGGEECCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTT-TTCBCTTCCCCCGGGSTT
T ss_pred             hhhhhhhHHHHhhhhhc-cccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccch-hhhccCCCcccccccccc
Confidence             1245789999888766 88999998888886  444   567888999999999999986 3334332211111   1 


Q ss_pred             --cccEEEeCCCccc--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHh------cChhHH
Q 013217          222 --YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHA------QSPEFK  291 (447)
Q Consensus       222 --~~Di~~~s~~K~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~------~~~~~~  291 (447)
                        ..-+++.|++|++  +|.|.||+++++      ++.+.+.........+.+...+.++. ..+...      ....++
T Consensus       232 ~~~~~i~~~S~SK~~~~pGlRiG~~~~~~------~~i~~~~~~~~~~~~~~~~~~q~a~~-~~l~~~~~~~~~~~~~~~  304 (418)
T d2r5ea1         232 MWERTITIGSAGKTFSLTGWKIGWAYGPE------ALLKNLQMVHQNCVYTCATPIQEAIA-VGFETELKRLKSPECYFN  304 (418)
T ss_dssp             TGGGEEEEEEHHHHTTCGGGCCEEEESCH------HHHHHHHHHHTTTTCSCCHHHHHHHH-HHHHHHHTTTTSTTSHHH
T ss_pred             ccceeeeeecCCccccCCCcccccccccc------hhhhhhhhcccccccccccchhhhcc-ccccccccccccchhhHH
Confidence              1237788999985  688999999988      67776655433333334443333322 222211      122346


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCC-----------CCCHHHHHH-HHhhcCeEEccCCCCCCC
Q 013217          292 VYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPM-----------GIDGARVEK-ILDMASITLNKNSVPGDK  359 (447)
Q Consensus       292 ~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~-----------~~~~~~~~~-~L~~~gI~v~~~~~p~~~  359 (447)
                      +..+.+..+++.+.+.|++.|+++..+ ..++++|+++...           ..+..++.+ .|+++||.+.++...+..
T Consensus       305 ~~~~~~~~~r~~l~~~L~~~g~~~~~P-~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~  383 (418)
T d2r5ea1         305 SISGELMAKRDYMASFLAEVGMNPTVP-QGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSE  383 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEEC-SBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCG
T ss_pred             HHHHHHHHhhhhHHhhHhhcCCcccCC-CceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCC
Confidence            677788888999999999999987654 4577788887531           123444554 557789999654222111


Q ss_pred             --CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          360 --SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       360 --~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                        .....+.||+++.  ++    ++++++.++.|++.+.
T Consensus       384 ~~~~~g~~~iRis~~--~~----~e~l~~a~~rl~~~lg  416 (418)
T d2r5ea1         384 PNKHLGEDFVRYCFF--KK----DENLQKAAEILRKWKG  416 (418)
T ss_dssp             GGHHHHTTEEEEECC--SC----HHHHHHHHHHHHHHHT
T ss_pred             CCccCCCCEEEEEec--CC----HHHHHHHHHHHHHHHc
Confidence              0112357999973  23    7888888888877653

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.91  E-value=1.3e-23  Score=207.67  Aligned_cols=314  Identities=18%  Similarity=0.153  Sum_probs=207.5

Q ss_pred             CCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccc
Q 013217           53 PGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPK  132 (447)
Q Consensus        53 ~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~  132 (447)
                      .|...|+|++.+..+|    +.++++||.++     .+.++||++||..++.++++|||+|+.....+... .       
T Consensus        66 ~GDd~Y~~dpt~~~lE----~~~a~l~G~e~-----al~~~SGt~An~~a~~~l~~~Gd~Vi~~~~f~~~~-~-------  128 (456)
T d1c7ga_          66 IGDEAYAGSENFYHLE----KTVKELFGFKH-----IVPTHQGRGAENLLSQLAIKPGQYVAGNMYFTTTR-F-------  128 (456)
T ss_dssp             SCCCCSSSCHHHHHHH----HHHHHHHCCSE-----EEEESSHHHHHHHHHHHHCCTTEEEEESSCCHHHH-H-------
T ss_pred             ccchhccCCchHHHHH----HHHHHHhCCCe-----EEECCCHHHHHHHHHHHhcCCCCeEecCcchHHHH-H-------
Confidence            3455688899999999    57889999986     35579999999999999999999998754321110 0       


Q ss_pred             cccccccceeEEEecc---------cCCCCCCCCHHHHHHHhhhhC---CcEEEEcCCCCCC---CC---ChHHHHHHHH
Q 013217          133 RRVSGTSIYFESMPYR---------LDESTGLVDYDMLEKTAILFR---PKLIIAGASAYPR---DF---DYPRMRQIAD  194 (447)
Q Consensus       133 ~~~~~~g~~~~~~~~~---------~~~~~~~id~~~l~~~~~~~~---~klii~~~~~~~~---~~---~~~~i~~ia~  194 (447)
                       .+...|.  ..+...         .++.++.+|+++|+++++++.   +.++++..++|+.   ..   ++++|.++|+
T Consensus       129 -~i~~~g~--~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~  205 (456)
T d1c7ga_         129 -HQEKNGA--TFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMAS  205 (456)
T ss_dssp             -HHHHTTE--EEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHH
T ss_pred             -HHHHcCc--eeeeccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHH
Confidence             0112222  111111         123457899999999998643   3466676555542   33   4678899999


Q ss_pred             HhCCEEEEehhhhcccccc------ccCCCC--------CCcccEEEeCCCcccCCCCCceEEeecCCcchhhHHHHhhh
Q 013217          195 AVGALLMMDMAHISGLVAA------SVVADP--------FKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINN  260 (447)
Q Consensus       195 ~~g~~livD~a~~~g~~~~------~~~~~~--------~~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~  260 (447)
                      +||+++++|+++..|....      +.....        +.++|++++|+||.++++.||+++++++     ++.++++.
T Consensus       206 ~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~GG~i~~~~~-----~l~~~~r~  280 (456)
T d1c7ga_         206 TYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDE-----EMFSAAKE  280 (456)
T ss_dssp             HHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSCEEEEESCH-----HHHHHHHH
T ss_pred             HcCCEEEEEcchhhcchhhhcccccccCCCChhhhccccccccccEEEeccccccccceeEEEcCCH-----HHHHHHHH
Confidence            9999999999987653211      111111        2358999999999999999999999875     56665543


Q ss_pred             c----cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCC------
Q 013217          261 A----VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLR------  330 (447)
Q Consensus       261 ~----~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~------  330 (447)
                      .    .....+|+.+...+.+++..+.+....   ++.++..+++++|.+.|.+.|+.++.+ ...|...+|..      
T Consensus       281 ~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~~~---~~l~~r~~~~~~L~e~L~~~g~~vv~p-~g~~~v~vda~~~~~~i  356 (456)
T d1c7ga_         281 LVVVYEGMPSYGGLAGRDMEAMAIGLREAMQY---EYIEHRVKQVRYLGDKLREAGVPIVEP-TGGHAVFLDARRFCPHL  356 (456)
T ss_dssp             HHHHHTCCTTTTTCCHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHHHHHHHTTCCBCSS-CCSSEEEEEHHHHCTTS
T ss_pred             hccccCCCcccchhhHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHhccCCcccC-CCCcceeEechhhccCC
Confidence            1    122234566677777777777776543   456777888999999999999887764 35666666521      


Q ss_pred             -CCCCCHHH-HHHHHhhcCeEEcc-CC-----CCCCC--CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          331 -PMGIDGAR-VEKILDMASITLNK-NS-----VPGDK--SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       331 -~~~~~~~~-~~~~L~~~gI~v~~-~~-----~p~~~--~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                       .....+.. +...+.+.||.+.. +.     .|...  ..-....+|++.+.   +..++++||++++.|+++.+..
T Consensus       357 ~~~~~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~---~~~T~e~iD~Vae~i~~v~~~~  431 (456)
T d1c7ga_         357 TQDQFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPR---RVYTYAHMDVVADGIIKLYQHK  431 (456)
T ss_dssp             CGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCT---TSCCHHHHHHHHHHHHHHHTTG
T ss_pred             CcccccHHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCc---ccCCHHHHHHHHHHHHHHHhhh
Confidence             11112333 44455678987532 11     11111  11123469998763   2345999999999999988754

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=3e-23  Score=201.52  Aligned_cols=340  Identities=12%  Similarity=0.117  Sum_probs=225.5

Q ss_pred             HHhhcCeeEecCCC--CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCC-ccceeeecC
Q 013217           17 ERQFKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDEN-KWGVNVQPL   93 (447)
Q Consensus        17 ~~~~~~i~l~~~~n--~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~-~~~~~v~~~   93 (447)
                      .+..+.|+|..+..  .+|+.+++++...+.+. ..+|+..      +...++.+...+++.+.+|.+.+ +.  +|.+|
T Consensus        23 a~~~~~i~l~~G~Pd~~~p~~i~~a~~~~~~~~-~~~Y~~~------~G~~~LReaia~~~~~~~g~~~~~~~--~I~vt   93 (382)
T d1u08a_          23 AQQHQAINLSQGFPDFDGPRYLQERLAHHVAQG-ANQYAPM------TGVQALREAIAQKTERLYGYQPDADS--DITVT   93 (382)
T ss_dssp             HHHTTCEECCCSSCSSCCCHHHHHHHHHHHHTT-CCSCCCT------TCCHHHHHHHHHHHHHHHSCCCCTTT--TEEEE
T ss_pred             hccCCCEEccCCCCCCCCCHHHHHHHHHHHhcC-CCCCCCC------cCCHHHHHHHHHHHHHHhCCCCCCCc--eEEec
Confidence            34457799988777  46788999998877653 2345432      22335555566788888887632 11  34558


Q ss_pred             CcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcE
Q 013217           94 SGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKL  172 (447)
Q Consensus        94 sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~kl  172 (447)
                      +|+ +++..+++++.++||.|++.+|.+..+..        .+...|..  .+....+.+.+.+|++++++.+.+ ++++
T Consensus        94 ~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~--------~~~~~g~~--~~~~~~~~~~~~~d~~~l~~~~~~-~~~~  162 (382)
T d1u08a_          94 AGATEALYAAITALVRNGDEVICFDPSYDSYAP--------AIALSGGI--VKRMALQPPHFRVDWQEFAALLSE-RTRL  162 (382)
T ss_dssp             SSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTCE--EEEEECCTTTCCCCHHHHHHHCCT-TEEE
T ss_pred             cchHHHHHHHHhhcccccceEEEecccccchhh--------hhhhcccc--ceecccccccccCCHHHHhhhhcc-CccE
Confidence            888 89999999999999999999988766532        23344543  333445556778999999998887 8999


Q ss_pred             EEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC-C-----cccEEEeCCCccc--CCCCC
Q 013217          173 IIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-K-----YCDVVTTTTHKSL--RGPRG  239 (447)
Q Consensus       173 ii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~-~-----~~Di~~~s~~K~l--~Gp~g  239 (447)
                      ++++.|+||+  ..+   +++|.++|++++++++.|+.+.. ....+...... .     ..-++..|++|++  +|.|.
T Consensus       163 i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~Ri  241 (382)
T d1u08a_         163 VILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEH-INFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKV  241 (382)
T ss_dssp             EEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTT-CBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCC
T ss_pred             EEECCCCcccccccccccchhhhhhhccccceeeeecchhh-ccccccccccccccccccCcEEEEeeccccccCCcccc
Confidence            9998888886  444   46777788889999999987532 23332222111 1     1237889999975  68899


Q ss_pred             ceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCC
Q 013217          240 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGG  319 (447)
Q Consensus       240 G~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~  319 (447)
                      ||+++++      ++.+.+.........+.+...+. +++.+++.- ...+.+..+.+.++++.+.+.+...|+++..+ 
T Consensus       242 G~~v~~~------~~~~~~~~~~~~~~~~~~~~~q~-a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~p-  312 (382)
T d1u08a_         242 GYCVAPA------PISAEIRKVHQYLTFSVNTPAQL-ALADMLRAE-PEHYLALPDFYRQKRDILVNALNESRLEILPC-  312 (382)
T ss_dssp             EEEECCH------HHHHHHHHHHHHHTSSCCHHHHH-HHHHHHHHC-THHHHTHHHHHHHHHHHHHHHTTSSSCEECCC-
T ss_pred             hhhhccc------hhHHHHHhhhccccccccccccc-ccccccccc-hHHHHHHHHHHHhhhhhhhhhhccCCcEEecC-
Confidence            9999987      66665544322222333344443 444466543 34456777888888888888888889887654 


Q ss_pred             CCCeeEEecCCCC-CCCHHHHHH-HHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217          320 SDNHLVLVDLRPM-GIDGARVEK-ILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       320 ~~~~~~~v~~~~~-~~~~~~~~~-~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~  393 (447)
                      ..++++|+++... ..+..++.+ +|+++||.+.++...+. .+...+++||++.  +.    ++++++..+.|++
T Consensus       313 ~gg~~~~~~~~~~~~~d~~e~~~~ll~e~gV~v~PG~~F~~-~~~~~~~~Ris~~--~~----~e~l~~al~RL~~  381 (382)
T d1u08a_         313 EGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCA-DPFPHKLIRLCFA--KK----ESTLLAAAERLRQ  381 (382)
T ss_dssp             CBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCS-SCCCSCEEEEECC--SC----HHHHHHHHHHHTT
T ss_pred             CceEEEEEecCCCCCCCHHHHHHHHHHHCCEEEEcchhhCC-CCCCCCEEEEEEe--CC----HHHHHHHHHHHhC
Confidence            4577889888753 356766665 55789999955432221 1223468999863  23    7777776666543

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.91  E-value=1e-22  Score=199.77  Aligned_cols=340  Identities=16%  Similarity=0.138  Sum_probs=214.3

Q ss_pred             CeeEecCCC------CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--------CCCccc
Q 013217           22 SLELIASEN------FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--------DENKWG   87 (447)
Q Consensus        22 ~i~l~~~~n------~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--------~~~~~~   87 (447)
                      .|+|..+++      .+++++++++...+......+|+..   .|   ..++.+.+.+++.+.++.        +++   
T Consensus        32 vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~---~G---~~~LReaia~~~~~~~~~~~~~~~~~~~~---  102 (412)
T d1bw0a_          32 IIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPT---VG---SPEAREAVATWWRNSFVHKEELKSTIVKD---  102 (412)
T ss_dssp             CEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCT---TC---CHHHHHHHHHHHHHHHCCSTTTGGGCCGG---
T ss_pred             cEECcCCCCCCCCCccccHHHHHHHHHHhhCCCCCCCCCC---cC---CHHHHHHHHHHHHHhcCcccccCCCCCCC---
Confidence            478877765      2457788888776655433455543   12   234555555677776643        333   


Q ss_pred             eeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHh
Q 013217           88 VNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTA  165 (447)
Q Consensus        88 ~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~  165 (447)
                       +|.+++|+ +|+..++.++++|||+|++.+|.|+++..        .+...|.  +++.+++++ +++.+|++++++..
T Consensus       103 -~I~it~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~--------~~~~~G~--~~~~v~~~~~~~~~~~~~~l~~~~  171 (412)
T d1bw0a_         103 -NVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYET--------VCKAYGI--GMHFYNCRPENDWEADLDEIRRLK  171 (412)
T ss_dssp             -GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHH--------HHHHTTC--EEEEEEEEGGGTTEECHHHHHHHC
T ss_pred             -eEEEecccccchhhhhhhhhccccceeeeeccchhhhh--------hhhccCc--cccccccccccccchhhHHHHhhh
Confidence             45568887 89999999999999999999998876532        3345565  444555543 45689999999988


Q ss_pred             hhhCCcEEEEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-------c--ccEEEeCCC
Q 013217          166 ILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-------Y--CDVVTTTTH  231 (447)
Q Consensus       166 ~~~~~klii~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-------~--~Di~~~s~~  231 (447)
                      .+ ++++++++.++||+  ..   ++++|.++|+++++++++|+++ ..+.+.+..+.+..       .  .-++..|++
T Consensus       172 ~~-~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~S  249 (412)
T d1bw0a_         172 DD-KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIY-AGMVFKGKDPNATFTSVADFETTVPRVILGGTA  249 (412)
T ss_dssp             CT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTT-TTCBCCSSCTTCCCCCTTSSCCSCCEEEEEEST
T ss_pred             hc-cccccccccccccccccchhhhccccccccccCCeeeechhhH-HHhccCCCCCccccccccccccccccccccccC
Confidence            77 88999988888886  33   4678888999999999999995 66665543322210       1  126678899


Q ss_pred             ccc--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHH
Q 013217          232 KSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLV  309 (447)
Q Consensus       232 K~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~  309 (447)
                      |++  +|+|.|++++++.......+........ . ...++.....+.++..+.........+..+++.++++.+.+.|.
T Consensus       250 K~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~  327 (412)
T d1bw0a_         250 KNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVG-M-LVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIG  327 (412)
T ss_dssp             TTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHH-H-HHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCccCCCCcccccccchhhcchhhhhhhcccc-c-cccCCchhhhhhcccccccccccccccccchhHHHHHHHHHHHH
Confidence            975  6899999998864211111211111110 0 01122333333332222222222346777888888999999997


Q ss_pred             H-CCcEeeeCCCCCeeEEecCCCC----CCCHHHH-HHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHH
Q 013217          310 E-LGYKLVSGGSDNHLVLVDLRPM----GIDGARV-EKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKE  383 (447)
Q Consensus       310 ~-~g~~~~~~~~~~~~~~v~~~~~----~~~~~~~-~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~d  383 (447)
                      + .|+.+..+ ...+++|+++...    ..+..++ .++|+++||.+.++...+     .++.+||++.  +.    +++
T Consensus       328 ~~~g~~~~~p-~gg~~l~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg-----~~g~iRis~~--~~----~e~  395 (412)
T d1bw0a_         328 ECIGLAPTMP-RGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFH-----APGFTRLTTT--RP----VEV  395 (412)
T ss_dssp             TSTTEEECCC-CBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGT-----CTTEEEEECC--SC----HHH
T ss_pred             HhcCceecCC-CCceEEEEeCChhhcCCCCCHHHHHHHHHHhCCEEEEeccccC-----CCCeEEEEEc--CC----HHH
Confidence            7 58876543 3455667655321    1244554 455677899995432221     2468999863  33    778


Q ss_pred             HHHHHHHHHHHHHH
Q 013217          384 FVAIADFIHEGVEI  397 (447)
Q Consensus       384 i~~l~~~i~~~l~~  397 (447)
                      +++.++.|++.++.
T Consensus       396 l~eal~Rl~~~l~~  409 (412)
T d1bw0a_         396 YREAVERIKAFCQR  409 (412)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            88877777777764

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.8e-23  Score=202.41  Aligned_cols=361  Identities=11%  Similarity=0.039  Sum_probs=229.0

Q ss_pred             CCCCHHHHHHHHHHHHHhhcCeeEecCCC--CCCHHHHHHHhhhhhccC-CCCCCCCcccCchhHHHHHHHHHHHHHHHH
Q 013217            2 QACNPEVCEIITKEKERQFKSLELIASEN--FTSRAVMEAVGSCLTNKY-SEGLPGKRYYGGNEYIDELETLCQKRALAA   78 (447)
Q Consensus         2 ~~~~~~~~~~~~~e~~~~~~~i~l~~~~n--~~~~~v~~a~~~~~~~~~-~~g~~~~~~~~g~~~~~~le~~~~~~~~~~   78 (447)
                      +..|+..|.-+.+ ....++-|+|..++.  ++|+.+++++...+.+.. ..+|+..      ....++.+...+++.+.
T Consensus         8 ~~~~~~~~~~~~~-~~~~~dvI~l~~G~p~~~~p~~v~~a~~~al~~~~~~~~Y~~~------~G~~~LReaia~~~~~~   80 (418)
T d1w7la_           8 DGIDYNPWVEFVK-LASEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKT------FGYPPLTKILASFFGEL   80 (418)
T ss_dssp             TTCCCCTHHHHHH-HHHTSCCEECCCCSCSSCCCHHHHHHHHHHTSSCGGGGSCCCT------TCCHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHH-HhCCCCCEECCCCCCCCCCCHHHHHHHHHHHhCCCcccCCCCC------cCCHHHHHHHHHHHHHH
Confidence            3455555543433 234556799987775  357889999887775421 1234332      22234555556788888


Q ss_pred             cCCCCCccceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC-------
Q 013217           79 FNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-------  150 (447)
Q Consensus        79 ~g~~~~~~~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------  150 (447)
                      +|.+.+.. -+|.+|+|+ +++..++.++++|||.|++.+|.++.+..        .+...|.....++....       
T Consensus        81 ~g~~~~~~-~~I~it~G~~~al~~~~~~l~~~g~~vlv~~p~~~~y~~--------~~~~~g~~~v~~~~~~~~~~~~~~  151 (418)
T d1w7la_          81 LGQEIDPL-RNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEP--------MTMMAGGRPVFVSLKPGPIQNGEL  151 (418)
T ss_dssp             HTCCCCHH-HHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTCEEEEEECEECC---CCS
T ss_pred             hCCCCCcc-cceeeccCcHHHHHHHHHhhccCCceeeccccccchhHH--------HHHHcCCEeecccccccccccccc
Confidence            88873210 145568887 89999999999999999999988776532        12333432222221110       


Q ss_pred             --CCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC--
Q 013217          151 --ESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--  221 (447)
Q Consensus       151 --~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~--  221 (447)
                        ..++.+|.+++.....+ ++++|+++.++||+  ..   .+++|.++|+++++++|+|+++ ..+.+.+..+.++.  
T Consensus       152 ~~~~~~~~d~~~~~~~~~~-~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y-~~l~~~~~~~~~~~~~  229 (418)
T d1w7la_         152 GSSSNWQLDPMELAGKFTS-RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVY-QWMVYDGHQHISIASL  229 (418)
T ss_dssp             EEGGGEECCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTT-TTCBCTTCCCCCGGGS
T ss_pred             ccccCcccchhhhhccccc-cccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhh-HHhhcCCCCCCCHHHc
Confidence              12346788888887766 77888888888886  33   4678899999999999999985 56555443222221  


Q ss_pred             --c--ccEEEeCCCccc--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHh---c---Chh
Q 013217          222 --Y--CDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHA---Q---SPE  289 (447)
Q Consensus       222 --~--~Di~~~s~~K~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~---~---~~~  289 (447)
                        .  -.+++.|++|.+  +|.|.||+++++      ++.+.+.+.......+.++..+.++ +.++..-   .   ...
T Consensus       230 ~~~~~~~i~~~S~SK~~~~pG~RvG~~v~~~------~~~~~l~~~~~~~~~~~~~~~q~~~-~~~l~~~~~~~~~~~~~  302 (418)
T d1w7la_         230 PGMWERTLTIGSAGKTFSATGWKVGWVLGPD------HIMKHLRTVHQNSVFHCPTQSQAAV-AESFEREQLLFRQPSSY  302 (418)
T ss_dssp             TTTGGGEEEEEEHHHHTTCGGGCCEEEECCH------HHHHHHHHHHHTTTSCCCHHHHHHH-HHHHHHHHHTTTSTTSH
T ss_pred             cccccccceecccCccccCCCCcccccccch------hhhhhhccccccccccccchhhHHH-HHHhhhccccccccccc
Confidence              1  247889999975  678889999988      6766665543333334444444333 3333321   1   223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCC------------CCCCHHH-HHHHHhhcCeEEccCCCC
Q 013217          290 FKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRP------------MGIDGAR-VEKILDMASITLNKNSVP  356 (447)
Q Consensus       290 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~------------~~~~~~~-~~~~L~~~gI~v~~~~~p  356 (447)
                      +....+.+.++++.+.+.|.+.|+++..+ ...+++|++++.            ...+..+ +.++|+++||.+.++...
T Consensus       303 ~~~~~~~~~~~r~~l~~~L~~~g~~~~~P-~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F  381 (418)
T d1w7la_         303 FVQFPQAMQRCRDHMIRSLQSVGLKPLIP-QGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIF  381 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTCEEEEC-SBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGG
T ss_pred             cccchhhhhhhhhhhhhhhhhcCCcccCC-CceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhh
Confidence            46677788888999999999999987764 456778887631            0112233 455678899999654322


Q ss_pred             CCC--CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          357 GDK--SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       357 ~~~--~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                      +..  .+...++|||++.  ++    ++++++.++.|++.
T Consensus       382 ~~~~~~~~~~~~iRis~~--~~----~~~l~~a~~rl~~~  415 (418)
T d1w7la_         382 YSVPHQKHFDHYIRFCFV--KD----EATLQAMDEKLRKW  415 (418)
T ss_dssp             SCHHHHTTSCSEEEEECC--CC----HHHHHHHHHHHHHH
T ss_pred             cCCCccCCCCCEEEEEEc--CC----HHHHHHHHHHHHHH
Confidence            221  1223468999852  33    78888888887664

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=99.91  E-value=2.1e-23  Score=205.70  Aligned_cols=343  Identities=14%  Similarity=0.100  Sum_probs=208.8

Q ss_pred             CeeEecCCCCCCHHH-HHHHhhhhhcc-CCCCCCC---CcccCchhHHHHHHHHHHHHHHHHcCC----CCCccceeeec
Q 013217           22 SLELIASENFTSRAV-MEAVGSCLTNK-YSEGLPG---KRYYGGNEYIDELETLCQKRALAAFNL----DENKWGVNVQP   92 (447)
Q Consensus        22 ~i~l~~~~n~~~~~v-~~a~~~~~~~~-~~~g~~~---~~~~~g~~~~~~le~~~~~~~~~~~g~----~~~~~~~~v~~   92 (447)
                      .|+|-.+||.++... .+.+.+..... ..++...   ...|+..+...++.+.+.+++.+.+|.    +++    +|.+
T Consensus        38 ~i~l~~aen~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e----~Ivi  113 (428)
T d1iaya_          38 VIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPE----RVVM  113 (428)
T ss_dssp             BEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTT----SCEE
T ss_pred             eEEeecccCccchHHHHHHHHhCCchhhhHhHhhhCHHhccCcCCcchHHHHHHHHHHHHHHhCCCCCCChh----hEEE
Confidence            478888999866443 33343211110 0011100   011222222345665666788888774    344    3445


Q ss_pred             CCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccc-ccceeEEEecccCC-CCCCCCHHHHHHHhhh--
Q 013217           93 LSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSG-TSIYFESMPYRLDE-STGLVDYDMLEKTAIL--  167 (447)
Q Consensus        93 ~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~--  167 (447)
                      |+|+ +++..++.++++|||+|++.+|.|+++..        .+.. .|  .++++++++. +++.+|+++++.+++.  
T Consensus       114 t~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~--------~~~~~~g--~~~v~v~~~~~~~~~~d~~~~~~~~~~~~  183 (428)
T d1iaya_         114 AGGATGANETIIFCLADPGDAFLVPSPYYPAFNR--------DLRWRTG--VQLIPIHCESSNNFKITSKAVKEAYENAQ  183 (428)
T ss_dssp             EEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHH--------HTTTTTC--CEEEEECCCTTTTTCCCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHhCCCCCEEEEccCCchHHHH--------HHHHhcC--CeEEEeecccccccccccccccchhhhhh
Confidence            7886 89999999999999999999998876532        1222 23  3566666654 3568999988765432  


Q ss_pred             ---hCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC-----------C--cccEE
Q 013217          168 ---FRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-----------K--YCDVV  226 (447)
Q Consensus       168 ---~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~-----------~--~~Di~  226 (447)
                         .++++|+++.|+||+  ..+   +++|.++|++||++||+|+++. .+.+.+....++           .  ...++
T Consensus       184 ~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~  262 (428)
T d1iaya_         184 KSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYA-ATVFDTPQFVSIAEILDEQEMTYCNKDLVHI  262 (428)
T ss_dssp             HTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTG-GGCCSSSCCCCHHHHHTSGGGTTSCTTSEEE
T ss_pred             ccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEeccccc-ccccCcccccccccccchhhccccccceEEE
Confidence               256788888888886  444   6889999999999999999964 444433211111           0  12378


Q ss_pred             EeCCCccc--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHH--HHhcChhHHHHHHHHHHHHH
Q 013217          227 TTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCL--KHAQSPEFKVYQNKVVSNCR  302 (447)
Q Consensus       227 ~~s~~K~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al--~~~~~~~~~~~~~~~~~~~~  302 (447)
                      +.|++|.+  +|.|.|+++..++     .+.+.+........   .+.....++++.+  ........++..+++.++++
T Consensus       263 ~~s~SK~~~~~GlRiG~~~~~~~-----~l~~~~~~~~~~~~---~~~~~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~  334 (428)
T d1iaya_         263 VYSLSKDMGLPGFRVGIIYSFND-----DVVNCARKMSSFGL---VSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHK  334 (428)
T ss_dssp             EEESTTTSSCGGGCEEEEEESCH-----HHHHHHHHHHTTSC---CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecCCCcccCCCccccccccccc-----chhhhhhhhhcccc---cccccccchhhhhhhhccccccccccccccchhHH
Confidence            89999976  5889999998663     56665554333222   1222222222111  11111223556667777888


Q ss_pred             HHHHHHHHCCcEeeeCCCCCeeEEecCCCC----CC-CHHHHH-HHHhhcCeEEccCCCCCCCCCCCCCeEEEecCcccc
Q 013217          303 ALASRLVELGYKLVSGGSDNHLVLVDLRPM----GI-DGARVE-KILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTT  376 (447)
Q Consensus       303 ~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~----~~-~~~~~~-~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~  376 (447)
                      .+.+.|+..|+++..+ ..++++|++++..    .. +..++. .+|+++||.+.++...+   ...++.+|+++.. .+
T Consensus       335 ~~~~~L~~~gi~~~~p-~gg~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~---~~~~g~~Ris~a~-~~  409 (428)
T d1iaya_         335 HFTNGLEVVGIKCLKN-NAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFE---CQEPGWFRVCFAN-MD  409 (428)
T ss_dssp             HHHHHHHHTTCCBCCC-SSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGT---CSSSSEEEEECSS-SC
T ss_pred             HHHHHHHhCCCEEecC-CcceEEEEECccccccCCCCCHHHHHHHHHHhCCEEEEcchhcC---CCCCCEEEEEeCC-CC
Confidence            8999998899987653 4577889887532    11 122344 45578899996543222   2235689998642 22


Q ss_pred             CCCCHHHHHHHHHHHHHHHH
Q 013217          377 RGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       377 ~g~~~~di~~l~~~i~~~l~  396 (447)
                          ++++++.++.|+++|.
T Consensus       410 ----~~~l~~al~Rl~~~l~  425 (428)
T d1iaya_         410 ----DGTVDIALARIRRFVG  425 (428)
T ss_dssp             ----HHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHh
Confidence                6778888888888775

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.90  E-value=5.5e-23  Score=203.11  Aligned_cols=302  Identities=14%  Similarity=0.121  Sum_probs=199.9

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh--cCCCCEEEEecCCCCcccCCCccccccccccccce
Q 013217           64 IDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY  141 (447)
Q Consensus        64 ~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al--~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~  141 (447)
                      ...+|.....++.+++|.+..   ..+..+++++++.+++++.  ..++++|+++...|.+.+        +.+...|..
T Consensus       111 ~~~~~~~~~~~~~~~~g~~~~---~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~--------k~~~~~g~~  179 (434)
T d2z67a1         111 MYALTNKILESFFKQLGLNVH---AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPI--------KAVSFVGMN  179 (434)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCE---EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH--------HHHHHTTCE
T ss_pred             HHHHHHHHHHHHHHhcCCCcc---eeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHH--------HHHHHhCCc
Confidence            345555555678899998764   2333344446777777776  348899999988877653        234455655


Q ss_pred             eEEEecccCCCCCCCCHHHHHHHhhhh----CCcEEEEcCCCC-CC-CCChHHHHHHHHHhCCEEEEehhhhcccccccc
Q 013217          142 FESMPYRLDESTGLVDYDMLEKTAILF----RPKLIIAGASAY-PR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASV  215 (447)
Q Consensus       142 ~~~~~~~~~~~~~~id~~~l~~~~~~~----~~klii~~~~~~-~~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~  215 (447)
                      ...++...+.+++.+|+++|+++++++    ++.+|+++.+++ ++ ..|+++|+++|+++|+++++|+||..+....+.
T Consensus       180 ~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~  259 (434)
T d2z67a1         180 MRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLE  259 (434)
T ss_dssp             EEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHH
T ss_pred             ceEEEeecCCCccCCCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhccc
Confidence            444443344466789999999999753    466677776665 34 678999999999999999999998655432211


Q ss_pred             C-CCCC-CcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHH
Q 013217          216 V-ADPF-KYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKV  292 (447)
Q Consensus       216 ~-~~~~-~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~  292 (447)
                      . ..+. .++|++++|+||++++|.| |+++++++     .+.+++.... ++..   .......+++++..+...++++
T Consensus       260 ~~~~~~~~~~D~~~~s~hK~l~~~~g~~~~~~~~~-----~~~~~~~~~~-~~~~---~~~~~~~~~a~l~~~~~~g~~~  330 (434)
T d2z67a1         260 KLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDA-----EFIKEISLSY-PGRA---SATPVVNTLVSLLSMGSKNYLE  330 (434)
T ss_dssp             HHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCH-----HHHHHHHTTS-CSCB---CSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccCCcceEEEcCccccccCCCccccccCcH-----HHHHHHHhhc-cccc---ccchHHHHHHHHHHHHHhcchh
Confidence            1 1111 1589999999999999988 67777764     6666666543 2222   2222333444555555567788


Q ss_pred             HHHHHHHHHHHHHHHHHH----CCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC------CCC
Q 013217          293 YQNKVVSNCRALASRLVE----LGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK------SAL  362 (447)
Q Consensus       293 ~~~~~~~~~~~l~~~L~~----~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~------~~~  362 (447)
                      ..++..++++++++.|++    .|++++.... ...+.+.+   ..+..++...|.+.||.......|...      ...
T Consensus       331 ~~~~~~~~a~~l~~~L~~l~~~~g~~ll~~~~-~~~~~~~~---~~~~~~l~~~L~~~gI~g~~v~~~l~~~g~~~~~~~  406 (434)
T d2z67a1         331 LVKNQKNSKKLLDELLNDLSKKTGGKFLDVES-PIASCISV---NSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTY  406 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCCBCCCCC-SSEEEEEC---SSCHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCC
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhcCceecCCCC-Cceeeeec---CCCHHHHHHHHHHcCCeeeehhhhccccCeeeeccc
Confidence            889999999999988876    4666654321 22222222   236788888999999965432112110      112


Q ss_pred             CCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217          363 VPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       363 ~~~~iRig~~~~~~~g~~~~di~~l~~~i~~  393 (447)
                      ...++|+.++..+|    +|||+++++.|++
T Consensus       407 ~~~~l~~~~s~~~T----~edID~~i~~L~k  433 (434)
T d2z67a1         407 THDYIVMNAAIGVR----TEDIVNSVSKLEK  433 (434)
T ss_dssp             SCCEEEEECCTTCC----HHHHHHHHHHHHT
T ss_pred             CCCeEEEecCCCCC----HHHHHHHHHHHhc
Confidence            34679998776666    9999999999875

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.90  E-value=4.3e-23  Score=200.25  Aligned_cols=326  Identities=13%  Similarity=0.101  Sum_probs=214.4

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh-cCCC
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPH  110 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al-~~pg  110 (447)
                      ...+-++++.+.+.+..       .++.+.+.+.++|    +++++++|.++     .|.++|||.|+.++++++ +++|
T Consensus        11 ~~~~~~~~~~~~l~~g~-------~~~~~g~~v~~fE----~~~a~~~g~~~-----~v~~~SGt~Al~lal~~l~~~~g   74 (384)
T d1b9ha_          11 YDDAERNGLVRALEQGQ-------WWRMGGDEVNSFE----REFAAHHGAAH-----ALAVTNGTHALELALQVMGVGPG   74 (384)
T ss_dssp             CCHHHHHHHHHHHHTSC-------CBTTTCSHHHHHH----HHHHHHTTCSE-----EEEESCHHHHHHHHHHHTTCCTT
T ss_pred             CCHHHHHHHHHHHHcCC-------eeecCCHHHHHHH----HHHHHHHCcCe-----EEEeCCHHHHHHHHHHHcCCCCC
Confidence            44556777777776520       0123345678888    58999999986     356699999999999998 8999


Q ss_pred             CEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCCCCChHHHH
Q 013217          111 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMR  190 (447)
Q Consensus       111 d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~~~~~~~i~  190 (447)
                      |+|++++..+.+...        .+...|.  +++.+++++.++.+|++.+++.+.+ ++++|++. +.++...|+++|.
T Consensus        75 deVi~p~~t~~a~~~--------ai~~~g~--~p~~~d~~~~~~~~d~~~~~~~i~~-~tk~i~~~-~~~g~~~d~~~i~  142 (384)
T d1b9ha_          75 TEVIVPAFTFISSSQ--------AAQRLGA--VTVPVDVDAATYNLDPEAVAAAVTP-RTKVIMPV-HMAGLMADMDALA  142 (384)
T ss_dssp             CEEEEESSSCTHHHH--------HHHHTTC--EEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCB-CGGGCCCCHHHHH
T ss_pred             CEEEEeccccccccc--------ccccccc--ccccccccccccccchhhhcccccc-cccccccc-cccccccccccch
Confidence            999999987765432        3334454  6777778888899999999999987 88887665 3444578999999


Q ss_pred             HHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCceEEeecCCcchhhHHHHhhhccCC------
Q 013217          191 QIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFP------  264 (447)
Q Consensus       191 ~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~------  264 (447)
                      ++|+++|+++|.|++|+.|....+.....+..+.++.++.+|.+.+..||+++++++     ++.+++......      
T Consensus       143 ~~~~~~~i~lieD~a~a~ga~~~g~~~g~~g~~~~~Sf~~~K~i~~g~GG~i~t~~~-----~~~~~~~~~~~~g~~~~~  217 (384)
T d1b9ha_         143 KISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNGKLMTAGEGGAVVFPDG-----ETEKYETAFLRHSCGRPR  217 (384)
T ss_dssp             HHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTTSSSCSSSCEEEEECTT-----CHHHHHHHHHHTBTTCCT
T ss_pred             hhhhhhhhhhhhhhceecccccCCEecCcccccceecccccccccccccchhhhhhH-----HHHHHHHHHHhcCCCCcc
Confidence            999999999999999999877655432222234455566679998889999999876     555443321100      


Q ss_pred             -------CCCCC-CcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEeeeC---CC-CC-eeEEecCC
Q 013217          265 -------GLQGG-PHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSG---GS-DN-HLVLVDLR  330 (447)
Q Consensus       265 -------~~~g~-p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~---~~-~~-~~~~v~~~  330 (447)
                             ...|. ..+..+.| +.++.++.  .+++..++..++++.+.+.|.+ .++.....   .. .+ ++.++.+.
T Consensus       218 ~~~~~~~~~~G~n~rms~l~A-aig~~qL~--~ld~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~  294 (384)
T d1b9ha_         218 DDRRYFHKIAGSNMRLNEFSA-SVLRAQLA--RLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIP  294 (384)
T ss_dssp             TCSSCCCCSCCCBCBCBHHHH-HHHHHHHT--THHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECT
T ss_pred             ccccccccccccccccccchh-hhhhhhhh--hcccchhhhhhhhhhhhhhhhcccccccccccccccccccccccceec
Confidence                   00111 11222222 12333433  4677788889999999999987 46544321   11 12 22333332


Q ss_pred             CCC-CCHHHHHHHHhhcCeEEccCCCCCCCCC------C------------------CCCeEEEecCccccCCCC-HHHH
Q 013217          331 PMG-IDGARVEKILDMASITLNKNSVPGDKSA------L------------------VPGGIRIGSPAMTTRGFS-EKEF  384 (447)
Q Consensus       331 ~~~-~~~~~~~~~L~~~gI~v~~~~~p~~~~~------~------------------~~~~iRig~~~~~~~g~~-~~di  384 (447)
                      ... ...+++.+.|.++||.++..+.|.+..+      .                  ....|.+.++.    +|+ ++|+
T Consensus       295 ~~~~~~Rd~l~~~L~~~GI~~~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~----~Lt~e~ei  370 (384)
T d1b9ha_         295 GLTEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRV----LLAGEPEL  370 (384)
T ss_dssp             TCCHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGG----GGSCHHHH
T ss_pred             ccccccHHHHHHHHHHCCCCeeeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccCCC----CCCCHHHH
Confidence            211 1235689999999999876544422100      0                  01236665443    233 6899


Q ss_pred             HHHHHHHHHHHHH
Q 013217          385 VAIADFIHEGVEI  397 (447)
Q Consensus       385 ~~l~~~i~~~l~~  397 (447)
                      +++++.|++++..
T Consensus       371 ~~I~~~i~~~l~~  383 (384)
T d1b9ha_         371 HATAEIIADAVAR  383 (384)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998864

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=99.90  E-value=1.1e-22  Score=200.48  Aligned_cols=343  Identities=15%  Similarity=0.090  Sum_probs=208.1

Q ss_pred             CeeEecCCCCCCH-HHHHHHhhhhhcc--CCCCCC---CCcccCchhHHHHHHHHHHHHHHHHcCC----CCCccceeee
Q 013217           22 SLELIASENFTSR-AVMEAVGSCLTNK--YSEGLP---GKRYYGGNEYIDELETLCQKRALAAFNL----DENKWGVNVQ   91 (447)
Q Consensus        22 ~i~l~~~~n~~~~-~v~~a~~~~~~~~--~~~g~~---~~~~~~g~~~~~~le~~~~~~~~~~~g~----~~~~~~~~v~   91 (447)
                      .|+|-.+||.+.- .+.+.+.+.....  ...+..   +...|+......++.+.+.+++.+.+|.    +++    +|.
T Consensus        38 ~i~l~~~en~l~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe----~I~  113 (431)
T d1m7ya_          38 IIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPN----HLV  113 (431)
T ss_dssp             BEECSSCCCCSCHHHHHHHHHHCCTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGG----GEE
T ss_pred             EEEeecccccccHHHHHHHHHhCCchhhhhhhhhhccHHhcCCcCCcCcHHHHHHHHHHHHHHhCCCCCCCcc----eEE
Confidence            4899999997654 3333443211100  000000   0001222222345655556788888773    343    455


Q ss_pred             cCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccc-ccceeEEEecccCCC-CCCCCHHHHHHHhhh-
Q 013217           92 PLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSG-TSIYFESMPYRLDES-TGLVDYDMLEKTAIL-  167 (447)
Q Consensus        92 ~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~-~~~id~~~l~~~~~~-  167 (447)
                      +|+|+ +++..++.++++|||+|++++|.|+++..        .+.. .|  .+.++++++++ ++.+|++.+++.+.+ 
T Consensus       114 it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~--------~~~~~~g--~~~v~v~~~~~~~~~l~~~~~~~~~~~~  183 (431)
T d1m7ya_         114 LTAGATSANETFIFCLADPGEAVLIPTPYYPGFDR--------DLKWRTG--VEIVPIHCTSSNGFQITETALEEAYQEA  183 (431)
T ss_dssp             EEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HTTTTTC--CEEEEEECCGGGTSCCCHHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHHHhcCCCCEEEEeCCCchhHHH--------HHHHhcC--ceeccccccchhcccccHHHhhhhhhhh
Confidence            68887 89999999999999999999998876532        1222 23  45666666643 467999999887753 


Q ss_pred             ----hCCcEEEEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCC------------C-C--cc
Q 013217          168 ----FRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADP------------F-K--YC  223 (447)
Q Consensus       168 ----~~~klii~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~------------~-~--~~  223 (447)
                          .++++++++.|+||+  ..   ++++|.++|+++|+++|+|+++. .+.+.+....+            . .  ..
T Consensus       184 ~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  262 (431)
T d1m7ya_         184 EKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYS-GTAFSSPSFISVMEVLKDRNCDENSEVWQR  262 (431)
T ss_dssp             HHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTG-GGCCSSSCCCCHHHHTTTTTCSSSSSGGGG
T ss_pred             hhccCcceEEEecCccccccccccccccccccccccccCcceeeccccc-ccccCCCCCCCHHHHhhhcccccccccCce
Confidence                246788888888886  33   46788999999999999999963 44433211100            0 0  12


Q ss_pred             cEEEeCCCccc--CCCCCceEEeecCCcchhhHH-HHhhhccCCCCCCCCcHHHHHHHHHHHHH--hcChhHHHHHHHHH
Q 013217          224 DVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELE-SAINNAVFPGLQGGPHNHTIGGLAVCLKH--AQSPEFKVYQNKVV  298 (447)
Q Consensus       224 Di~~~s~~K~l--~Gp~gG~i~~~~~~~~~~~~~-~~i~~~~~~~~~g~p~~~~~aal~~al~~--~~~~~~~~~~~~~~  298 (447)
                      -+++.|++|.+  +|.|.|+++.++      +.. ..........  +. +.....++++.+..  .......+..+++.
T Consensus       263 vi~~~s~SK~~~~~G~RiG~~~~~~------~~i~~~~~~~~~~~--~~-~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~  333 (431)
T d1m7ya_         263 VHVVYSLSKDLGLPGFRVGAIYSND------DMVVAAATKMSSFG--LV-SSQTQHLLSAMLSDKKLTKNYIAENHKRLK  333 (431)
T ss_dssp             EEEEEESSSSSCCGGGCEEEEEESC------HHHHHHHHHHGGGS--CC-CHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCcccccCCCCccceeccch------hhhHHHHHHHhccc--cc-cccccchhhhhhccchhhhhhhhhhhhhhh
Confidence            37889999986  578899999987      443 3333222211  11 22222222222211  11122355666777


Q ss_pred             HHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCC-----CCHHH-HHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecC
Q 013217          299 SNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMG-----IDGAR-VEKILDMASITLNKNSVPGDKSALVPGGIRIGSP  372 (447)
Q Consensus       299 ~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~-----~~~~~-~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~  372 (447)
                      ++++.+.+.|++.|+++..+ ..+.++|++++..-     .+..+ +.+.|+++||.+.++...+   ...++++|+++.
T Consensus       334 ~~~~~l~~~L~~~gi~~~~p-~gg~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~---~~~~~~~Ri~~a  409 (431)
T d1m7ya_         334 QRQKKLVSGLQKSGISCLNG-NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCH---CTEPGWFRVCFA  409 (431)
T ss_dssp             HHHHHHHHHHHTTTCEECCC-CSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGT---CSSTTEEEEECS
T ss_pred             hhhhhhhhhhhcCCcEEecC-CceeEEEEECccccccCcccCHHHHHHHHHHHCCEEEEeccccC---CCCCCEEEEEeC
Confidence            88888999999999998764 45677888875421     11223 3455678999995432222   223568999864


Q ss_pred             ccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          373 AMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       373 ~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      . .    .++++++.++.|++++++
T Consensus       410 ~-~----~e~~l~~al~rL~~~l~~  429 (431)
T d1m7ya_         410 N-L----PERTLDLAMQRLKAFVGE  429 (431)
T ss_dssp             S-S----CHHHHHHHHHHHHHHHHH
T ss_pred             c-C----CHHHHHHHHHHHHHHHHH
Confidence            2 2    267888888888887764

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=1.5e-23  Score=209.16  Aligned_cols=327  Identities=17%  Similarity=0.170  Sum_probs=209.8

Q ss_pred             CCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccc
Q 013217           51 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT  130 (447)
Q Consensus        51 g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~  130 (447)
                      ..+|.+.|++++.+.++|    +++++++|.+.     .+.++||++||..++.+++++||.++.....+..+.+|.+..
T Consensus        63 ~~~gd~~Y~~~~~~~~le----~~~a~l~G~~~-----~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~  133 (467)
T d2v1pa1          63 MMRGDEAFSGSRSYYALA----ESVKNIFGYQY-----TIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFD  133 (467)
T ss_dssp             TTSCCCCSSSCHHHHHHH----HHHHHHTCCSE-----EEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCH
T ss_pred             ccccchhhcCCchHHHHH----HHHHHHHCCCE-----EEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEeccccc
Confidence            446667789999999998    57899999986     356799999999999999999999888777766665554432


Q ss_pred             cc-cccccccceeEEEeccc-------CCCCCCCCHHHHHHHhhhhC---CcEEEEcCCCCC--C-CC---ChHHHHHHH
Q 013217          131 PK-RRVSGTSIYFESMPYRL-------DESTGLVDYDMLEKTAILFR---PKLIIAGASAYP--R-DF---DYPRMRQIA  193 (447)
Q Consensus       131 ~~-~~~~~~g~~~~~~~~~~-------~~~~~~id~~~l~~~~~~~~---~klii~~~~~~~--~-~~---~~~~i~~ia  193 (447)
                      .. ..+..+|..+..++.+.       ++..+.+|++++++.+++..   +++|++...++.  + ..   ++++|+++|
T Consensus       134 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia  213 (467)
T d2v1pa1         134 TTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIA  213 (467)
T ss_dssp             HHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHH
T ss_pred             ccHHHHHHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHH
Confidence            21 12234454333222211       12246799999999997643   456666543332  2 33   578999999


Q ss_pred             HHhCCEEEEehhhhcccccccc------CCCC--------CCcccEEEeCCCcccCCCCCceEEeecCCcchhhHHHHhh
Q 013217          194 DAVGALLMMDMAHISGLVAASV------VADP--------FKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAIN  259 (447)
Q Consensus       194 ~~~g~~livD~a~~~g~~~~~~------~~~~--------~~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~  259 (447)
                      ++||+++++|++|..|....+.      ....        +.++|++++|+||.+++|.||+++++++     .+.....
T Consensus       214 ~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~gg~i~~~~~-----~~~~~~~  288 (467)
T d2v1pa1         214 KKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDD-----SFFDVYT  288 (467)
T ss_dssp             HHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSCEEEEECSG-----GGHHHHH
T ss_pred             HHcCCEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCCceeEEecch-----hhhhHHH
Confidence            9999999999999776543211      1111        2358999999999999999999999874     3322211


Q ss_pred             h-------ccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCC--
Q 013217          260 N-------AVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLR--  330 (447)
Q Consensus       260 ~-------~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~--  330 (447)
                      .       .......++.....+++.+..+.....   .++.++..+++++|.++|.+.++.+...  ..|...++..  
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~v~~~--~~~~~~~~~~~~  363 (467)
T d2v1pa1         289 ECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMN---LDWLAYRIAQVQYLVDGLEEIGVVCQQA--GGHAAFVDAGKL  363 (467)
T ss_dssp             HHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHTTCCEEEE--CSSCEEEEHHHH
T ss_pred             hhcccccccccCcchhhhHHHHHHHHHHHhHHhhh---HHHHHHHHHHHHHHHHHHHhcCCcccCC--Cccceeecchhh
Confidence            1       111112234444555555555555433   4567788899999999999988766543  2343333311  


Q ss_pred             -C----CCCCH-HHHHHHHhhcCeEEccCC------CCCCC--CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          331 -P----MGIDG-ARVEKILDMASITLNKNS------VPGDK--SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       331 -~----~~~~~-~~~~~~L~~~gI~v~~~~------~p~~~--~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                       +    ....+ ..+...+.+.||......      .|...  .+.....+|++++.   +.++++|||++++.|+++.+
T Consensus       364 ~~~~~~~~~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~---~~~T~eeiD~vv~~l~~v~~  440 (467)
T d2v1pa1         364 LPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPR---ATYTQTHMDFIIEAFKHVKE  440 (467)
T ss_dssp             STTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCT---TTCCHHHHHHHHHHHHHHHH
T ss_pred             cCCcchhhhhhHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEecCC---CCCCHHHHHHHHHHHHHHHH
Confidence             1    11112 235556688898654321      11111  22345689998653   23459999999999999987


Q ss_pred             HHH
Q 013217          397 ITL  399 (447)
Q Consensus       397 ~~~  399 (447)
                      +..
T Consensus       441 ~~~  443 (467)
T d2v1pa1         441 NAA  443 (467)
T ss_dssp             TGG
T ss_pred             HHH
Confidence            653

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=2e-22  Score=199.73  Aligned_cols=314  Identities=7%  Similarity=0.007  Sum_probs=201.2

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-HHHHHHHHHh---cCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217           64 IDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAI---LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  139 (447)
Q Consensus        64 ~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a~~~~~~al---~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g  139 (447)
                      ...+|.....++++++|.+...-  .+.++.|+ .++.+++.++   ..++++|+++...|.+..        +.+.+.|
T Consensus        92 ~~~le~~~~~~~~~l~g~~~~~~--~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~--------~a~~~~g  161 (445)
T d3bc8a1          92 LNKITNSLVLNVIKLAGVHSVAS--CFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCF--------KSMVTAG  161 (445)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTCCE--EEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHH--------HHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhCCCcccC--ccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHH--------HHHHHcC
Confidence            45678777789999999985432  23345555 4555555554   467789999888776653        2455667


Q ss_pred             ceeEEEecccCCCCCCCCHHHHHHHhhhh---CCcEEEEcCCCCC-C-CCChHHHHHHHHHhCCEEEEehhhhccccccc
Q 013217          140 IYFESMPYRLDESTGLVDYDMLEKTAILF---RPKLIIAGASAYP-R-DFDYPRMRQIADAVGALLMMDMAHISGLVAAS  214 (447)
Q Consensus       140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~---~~klii~~~~~~~-~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~  214 (447)
                      .....+....+.+++.+|+++|++++++.   ++.+|+++.++++ + ..|+++|+++|+++|+++++|+||+.++.+..
T Consensus       162 ~~~~~v~~~~~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~  241 (445)
T d3bc8a1         162 FEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCM  241 (445)
T ss_dssp             CEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHH
T ss_pred             CeeEEEEeeccCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhcc
Confidence            65444443333467899999999999753   4567777765553 4 77999999999999999999999876654321


Q ss_pred             cCC---CCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhH
Q 013217          215 VVA---DPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF  290 (447)
Q Consensus       215 ~~~---~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~  290 (447)
                      ...   ..+.++|++++|+||++.+|.| |++++++.     .+.+.+.........+++..    .+++++..+...++
T Consensus       242 ~~~~~~~~~~~vd~~~~s~hK~~~~p~g~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~~~~  312 (445)
T d3bc8a1         242 HLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNE-----PFIQDISKMYPGRASASPSL----DVLITLLSLGCSGY  312 (445)
T ss_dssp             HHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCH-----HHHHHHHHHSCSCBCSHHHH----HHHHHHHHHHHHHH
T ss_pred             ccchhccCcCCcceEEecCccccccCCCCceeeeCCh-----HHHHHHHHHHhhcccCcchH----HHHHHHHHHhhhcc
Confidence            110   1122589999999999999988 67777764     56666655433222222222    23334444444567


Q ss_pred             HHHHHHHHHHHHHHHHHHHH----CCcEeeeCCCCCeeEEecCCC----CCCCHHHHHHHHhhcCeEEccCCCCC-----
Q 013217          291 KVYQNKVVSNCRALASRLVE----LGYKLVSGGSDNHLVLVDLRP----MGIDGARVEKILDMASITLNKNSVPG-----  357 (447)
Q Consensus       291 ~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~~~~~~~v~~~~----~~~~~~~~~~~L~~~gI~v~~~~~p~-----  357 (447)
                      .+..++..++++++.+.|.+    .|..+...........+.+..    ...+..++...|.+.||.....+.+.     
T Consensus       313 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~i  392 (445)
T d3bc8a1         313 RKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTV  392 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEEE
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeeccccCCCCHHHHHHHHHHcCCCcceeeccccccch
Confidence            77778888888888888765    355554422222222333221    12344567777888887432211111     


Q ss_pred             ----------CCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHHHH
Q 013217          358 ----------DKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLE  400 (447)
Q Consensus       358 ----------~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~~  400 (447)
                                .........+|++++..+|    ++||+++++.|+++++..++
T Consensus       393 ~~~~~~~~g~~~~~~~~~~i~i~~~~~~T----~eDID~~v~~L~kilk~~rk  441 (445)
T d3bc8a1         393 SGHTFRGFMSHADNYPCAYLNAAAAIGMK----MQDVDLFIKRLDKCLNIVRK  441 (445)
T ss_dssp             TTEEEETTTTTSSCCSSCEEEEECCTTCC----HHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhcCCCCccCCCCeEEEeCcCCCC----HHHHHHHHHHHHHHHHHHHh
Confidence                      0112233569998776555    99999999999999998754

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=99.90  E-value=1.4e-22  Score=198.16  Aligned_cols=354  Identities=14%  Similarity=0.043  Sum_probs=209.2

Q ss_pred             HHHHHHHHHHHHHhhcCeeEecCCC---CCC-HHHHHHHhhhhhccC--CCCCCCCcccCchhHHHHHHHHHHHHHHHHc
Q 013217            6 PEVCEIITKEKERQFKSLELIASEN---FTS-RAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAF   79 (447)
Q Consensus         6 ~~~~~~~~~e~~~~~~~i~l~~~~n---~~~-~~v~~a~~~~~~~~~--~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~   79 (447)
                      .+|++++.-  ...++.|+|-.+..   ..| +.+.+++.+.+...-  ..+|+.      .+...++.+...+++.+.+
T Consensus        17 s~ire~~~~--~~~~~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~------~~G~~~lR~aia~~l~~~~   88 (403)
T d1wsta1          17 SEVRELLKL--VETSDVISLAGGLPAPETFPVETIKKIAVEVLEEHADKALQYGT------TKGFTPLRLALARWMEKRY   88 (403)
T ss_dssp             HHHHHHHHH--HTSSSCEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCC------SSCCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHH--hCCCCcEECCCCCCCccccCHHHHHHHHHHHHHhCcccccCCCC------CcCCHHHHHHHHHHHHHHh
Confidence            355555442  23456788854322   223 455666666553310  012332      2223456656667888878


Q ss_pred             CCCCCccceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCH
Q 013217           80 NLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY  158 (447)
Q Consensus        80 g~~~~~~~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~  158 (447)
                      |.+-+.  -+|.+|+|+ +++..++.++++|||+|++.+|.|..+..        .+...|.  +.+.++.+.+  ..+.
T Consensus        89 g~~~~~--~~I~it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~~~~--------~~~~~g~--~~~~v~~~~~--~~~~  154 (403)
T d1wsta1          89 DIPMSK--VEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQ--------AFKYYDP--EFISIPLDDK--GMRV  154 (403)
T ss_dssp             CCCCTT--CEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHTTCC--EEEEEEEETT--EECH
T ss_pred             CCCCCh--HHeeecccchHHHHHHHHHHhhcCCccccCCCcchhhhH--------HHhhccc--cceeEeeccc--CCcc
Confidence            765221  255668887 89999999999999999999998876542        2334454  4444445422  1222


Q ss_pred             HHHH----HHhhhh--CCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-----c
Q 013217          159 DMLE----KTAILF--RPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-----Y  222 (447)
Q Consensus       159 ~~l~----~~~~~~--~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-----~  222 (447)
                      ..+.    ......  .+.+++++.++||+  ..+   +++|.++|++||++||+|+++ ..+.+.+....++.     .
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y-~~l~~~~~~~~~~~~~~~~~  233 (403)
T d1wsta1         155 DLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPY-SELRYSGEPTPPIKHFDDYG  233 (403)
T ss_dssp             HHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTT-TTCBCSSCCCCCGGGGCSSS
T ss_pred             ccccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccch-hheecCCCCCCcccccCCCC
Confidence            2222    222221  23345556778875  444   568888999999999999996 44444433222222     2


Q ss_pred             ccEEEeCCCccc-CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc-ChhHHHHHHHHHHH
Q 013217          223 CDVVTTTTHKSL-RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-SPEFKVYQNKVVSN  300 (447)
Q Consensus       223 ~Di~~~s~~K~l-~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~-~~~~~~~~~~~~~~  300 (447)
                      ..+++.|++|++ +|.|.|+++.++      ++.+.+.........+. +.....+.+..+.... ....++..+.+..+
T Consensus       234 ~~i~~~S~SK~~~~G~RiG~~i~~~------~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (403)
T d1wsta1         234 RVIYLGTFSKILAPGFRIGWVAAHP------HLIRKMEIAKQSIDLCT-NTFGQAIAWKYVENGYLDEHIPKIIEFYKPR  306 (403)
T ss_dssp             CEEEEEESTTTTCGGGCCEEEEECH------HHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             cEEEEccccceecCcccccccccch------HHHHHHHHHHhhhcccc-ccchhhhHHhhhhccccchhHHHHHHHHHHH
Confidence            348889999987 477889999987      56655443211111112 2222222222222111 12235556666777


Q ss_pred             HHHHHHHHHH---CCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccC
Q 013217          301 CRALASRLVE---LGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTR  377 (447)
Q Consensus       301 ~~~l~~~L~~---~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~  377 (447)
                      ++.+.+.|.+   .|+.+..+ ..+.++|+++. .+.+.+++.+.|.++||.+.++...+. ....++++|+++.. .+ 
T Consensus       307 ~~~~~~~L~~~~~~~~~~~~p-~gg~~~~~~~~-~~~~~~~~~~~l~~~gV~v~pg~~f~~-~~~~~~~iRi~~~~-~~-  381 (403)
T d1wsta1         307 RDAMLEALEEYMPEGVEWTKP-EGGMFVRVTLP-EGIDTKLMMERAVAKGVAYVPGEAFFV-HRDKKNTMRLNFTY-VP-  381 (403)
T ss_dssp             HHHHHHHHHHHCCTTCEECCC-SBSSEEEEECC-TTCCTTTTHHHHHHTTEECEEGGGGST-TCCCCSEEEEECSS-SC-
T ss_pred             HHHHHHHHHhhccCCeEEeCC-CceeEEEEECC-CCCCHHHHHHHHHHCCEEEEechhhcC-CCCCCCEEEEEecC-CC-
Confidence            7778888877   35665443 44677888885 466778888889999999854321111 11235689999643 23 


Q ss_pred             CCCHHHHHHHHHHHHHHHHH
Q 013217          378 GFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       378 g~~~~di~~l~~~i~~~l~~  397 (447)
                         ++++++.++.|+++++.
T Consensus       382 ---~~~l~~al~rl~~~l~~  398 (403)
T d1wsta1         382 ---EETIREGVRRLAETIKE  398 (403)
T ss_dssp             ---HHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHH
Confidence               78899888888888874

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.89  E-value=5.5e-22  Score=190.55  Aligned_cols=319  Identities=13%  Similarity=0.056  Sum_probs=198.5

Q ss_pred             cCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-H
Q 013217           21 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P   97 (447)
Q Consensus        21 ~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~   97 (447)
                      +-|+|..++|+  +|+.+++++...+..  ...||...   +    .+++    +.+++.+|.+++    +|.+++|+ +
T Consensus        23 ~~idls~~~np~~~p~~~~~a~~~~~~~--~~~Yp~~~---~----~~Lr----~aia~~~~v~~~----~I~~~~g~~~   85 (355)
T d1lc5a_          23 QLLDFSANINPLGMPVSVKRALIDNLDC--IERYPDAD---Y----FHLH----QALARHHQVPAS----WILAGNGETE   85 (355)
T ss_dssp             GSEECSSCCCTTCCCHHHHHHHHHTGGG--GGSCCCTT---C----HHHH----HHHHHHHTSCGG----GEEEESSHHH
T ss_pred             heEEccCCCCCCCCCHHHHHHHHHHHHH--hccCCCCC---h----HHHH----HHHHHHhCCCHH----HEEecccHHH
Confidence            45888888775  588899998876543  23454321   1    2343    567888999875    45568888 5


Q ss_pred             HHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcC
Q 013217           98 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA  177 (447)
Q Consensus        98 a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~  177 (447)
                      ++..++.++.+  +.+++..|.+..+.        ......+.....++++.+ +++.++ +++++.+.. ++++|+++.
T Consensus        86 ~~~~~~~~~~~--~~~~v~~p~~~~~~--------~~~~~~~~~~~~v~~~~~-~~~~~~-~~~~~~~~~-~~~~v~l~n  152 (355)
T d1lc5a_          86 SIFTVASGLKP--RRAMIVTPGFAEYG--------RALAQSGCEIRRWSLREA-DGWQLT-DAILEALTP-DLDCLFLCT  152 (355)
T ss_dssp             HHHHHHHHHCC--SEEEEEESCCTHHH--------HHHHHTTCEEEEEECCGG-GTTCCC-TTHHHHCCT-TCCEEEEES
T ss_pred             HHHHHHhhhcc--ccccccCCccceec--------cccccccccceeeeeecc-CCccce-eeeeecccc-ccceeeeec
Confidence            65655555443  33444445443321        112234443444454332 334444 556666666 899999998


Q ss_pred             CCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC---cccEEEeCCCccc--CCCCCceEEeecC
Q 013217          178 SAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK---YCDVVTTTTHKSL--RGPRGGMIFFKKD  247 (447)
Q Consensus       178 ~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~---~~Di~~~s~~K~l--~Gp~gG~i~~~~~  247 (447)
                      |+||+  ..+   +.+|.++|+++++++++|++++ .+...+....+..   ...+++.|++|++  +|.|.||++++++
T Consensus       153 P~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~-~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~  231 (355)
T d1lc5a_         153 PNNPTGLLPERPLLQAIADRCKSLNINLILDEAFI-DFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDD  231 (355)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTG-GGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCH
T ss_pred             ccCcccccchhhhhhhhhhhcccccccccccccee-eeeeecccccccccccccceeecccccccccccccccceeccch
Confidence            88886  444   5688888999999999999964 3333221111111   2348889999985  6889999999873


Q ss_pred             CcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCCCCeeEE
Q 013217          248 PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLVL  326 (447)
Q Consensus       248 ~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~  326 (447)
                           .+.+.+.....+.   +.+.....+...+++.  ...+.+.++++.++.+++.+.|.+. |+++.+  ...+++|
T Consensus       232 -----~~~~~~~~~~~~~---~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p--~~~~f~~  299 (355)
T d1lc5a_         232 -----AAMARMRRQQMPW---SVNALAALAGEVALQD--SAWQQATWHWLREEGARFYQALCQLPLLTVYP--GRANYLL  299 (355)
T ss_dssp             -----HHHHHHHHHSCTT---CSCHHHHHHHHHGGGC--HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECC--CSSSEEE
T ss_pred             -----hhhHHHHhhcCCc---cccccccccccccccc--cchhHHHHHHHHHHHHHHHHHHhhcCCcEECC--CCCEEEE
Confidence                 3445555443332   2222222222223321  1234677788888999999999885 666544  3456678


Q ss_pred             ecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          327 VDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       327 v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      +++..   +..++.+.|.++||.++.+...   +...++++||+..   +    ++|++++.++|+++|
T Consensus       300 ~~~~~---~~~~~~~~L~~~gv~vr~~~~f---~~~~~~~iRis~~---~----~~e~~~li~aL~~il  355 (355)
T d1lc5a_         300 LRCER---EDIDLQRRLLTQRILIRSCANY---PGLDSRYYRVAIR---S----AAQNERLLAALRNVL  355 (355)
T ss_dssp             EEESC---TTCCHHHHHHTTTEECEECTTS---TTCCTTEEEEECC---C----HHHHHHHHHHHHHHC
T ss_pred             EECCC---CHHHHHHHHHHCCcEEEeCccC---CCCCCCEEEEEeC---C----HHHHHHHHHHHHHhC
Confidence            87753   4456788888999999653211   1223568999864   3    899999999998764

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=2.9e-22  Score=195.01  Aligned_cols=340  Identities=17%  Similarity=0.121  Sum_probs=212.0

Q ss_pred             cCeeEecCCC--CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-H
Q 013217           21 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P   97 (447)
Q Consensus        21 ~~i~l~~~~n--~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~   97 (447)
                      ..|+|..+++  .+|+.+++++.+....  ..+|+..      +...++.+.+.+++.+.+|.+.+.  -+|.+|+|+ +
T Consensus        29 ~vi~l~~G~p~~~~p~~~~~al~~~~~~--~~~Y~~~------~G~~~LR~aia~~~~~~~g~~~~~--~~I~it~G~~~   98 (389)
T d2gb3a1          29 RIHHLNIGQPDLKTPEVFFERIYENKPE--VVYYSHS------AGIWELREAFASYYKRRQRVDVKP--ENVLVTNGGSE   98 (389)
T ss_dssp             EEEECSSCCCCSCCCTHHHHHHHHTCCS--SCCCCCT------TCCHHHHHHHHHHHHHTSCCCCCG--GGEEEESHHHH
T ss_pred             CEEECCCCCCCCCCCHHHHHHHHhcCCC--CCCCCCC------cCCHHHHHHHHHHHHHhcCCCccc--ceEEecccccc
Confidence            4488887776  3578888988764322  2344443      223455555667888888876221  145568887 8


Q ss_pred             HHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcC
Q 013217           98 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA  177 (447)
Q Consensus        98 a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~  177 (447)
                      ++..++.+++++||.|++.+|.+.....        .+...|.  ..+.++.+.+.+..+.+.+...+.+ ++++++++.
T Consensus        99 ~l~~~~~~l~~~gd~V~i~~P~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~n  167 (389)
T d2gb3a1          99 AILFSFAVIANPGDEILVLEPFYANYNA--------FAKIAGV--KLIPVTRRMEEGFAIPQNLESFINE-RTKGIVLSN  167 (389)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCTHHHH--------HHHHHTC--EEEEEECCGGGTSCCCTTGGGGCCT-TEEEEEEES
T ss_pred             cccccccccccCCCeEEEeCCCCccccc--------cccccCc--cccccccccccccchhhhhhhhccc-CccEEEeCC
Confidence            9999999999999999999998765432        2234443  4444445444455555666655555 789999998


Q ss_pred             CCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC---cccEEEeCCCccc--CCCCCceEEeecC
Q 013217          178 SAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK---YCDVVTTTTHKSL--RGPRGGMIFFKKD  247 (447)
Q Consensus       178 ~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~---~~Di~~~s~~K~l--~Gp~gG~i~~~~~  247 (447)
                      |+||+  ..   ++++|.++|+++|+++|+|+++ ..+...+...+...   ...+++.|++|.+  +|.|.|+++++++
T Consensus       168 P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y-~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~GlRiG~~~~~~~  246 (389)
T d2gb3a1         168 PCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVY-SEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNE  246 (389)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTT-TTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCH
T ss_pred             CCccccccchHHHHHHHHhhcccCCEEEEEeccc-cccccccccccccccccccccccccccccccCcccceeeeeccch
Confidence            88886  33   4689999999999999999985 45554443222211   2347778888875  5788899998773


Q ss_pred             CcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEe
Q 013217          248 PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLV  327 (447)
Q Consensus       248 ~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v  327 (447)
                           .+.......... . .+++.....+....+.. ....+++..+...++++.+.+.|++.|+.....+....++|+
T Consensus       247 -----~i~~~~~~~~~~-~-~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~g~~~~~  318 (389)
T d2gb3a1         247 -----ELISHAMKLAQG-R-LAPPLLEQIGSVGLLNL-DDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITA  318 (389)
T ss_dssp             -----HHHHHHHHHHHH-S-CCCCHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEEEE
T ss_pred             -----hHHHHHhhhhhc-c-ccccccccccccccccc-cchhcccccccccccchhhhhhhhhhccccccCCCceEEEEE
Confidence                 344333322111 1 12233333222223321 122346677888889999999999988654444455677888


Q ss_pred             cCCCCCCCHHHHHHHH-hh-----cCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          328 DLRPMGIDGARVEKIL-DM-----ASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       328 ~~~~~~~~~~~~~~~L-~~-----~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      +++..  ++.++.+.| ++     .||.+.++...+..+....+.+||++.  .+    ++++++.++.|.++|+.+
T Consensus       319 ~lp~~--~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~--~~----~~~l~~a~~~L~~~lk~f  387 (389)
T d2gb3a1         319 ELPVE--DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV--LE----KDLLSRAIDVLMEGLKMF  387 (389)
T ss_dssp             ECSSS--CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC--SC----HHHHHHHHHHHHHHHHHH
T ss_pred             eCCCC--CHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEEc--CC----HHHHHHHHHHHHHHHHHh
Confidence            87532  566665544 44     355553321111111123468999863  33    788888888888877754

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.89  E-value=6.2e-23  Score=197.87  Aligned_cols=285  Identities=18%  Similarity=0.090  Sum_probs=167.7

Q ss_pred             HHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEe--cCCCCcccCCCccccccccccccceeEEEecccC
Q 013217           73 KRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGL--DLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD  150 (447)
Q Consensus        73 ~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  150 (447)
                      +...+.++.++.+.  .+.+.+|++|+.+++.++. |||.|++.  .+.|.++.        ..+...|.  +++.  . 
T Consensus        57 ~~~~~~~~~~~~e~--~~~~~~~~~a~~~~l~al~-~~~~vi~~~~~~~~~~~~--------~~~~l~g~--~~v~--~-  120 (366)
T d2aeua1          57 EYGLKHLGGDENDK--CVGFNRTSSAILATILALK-PKKVIHYLPELPGHPSIE--------RSCKIVNA--KYFE--S-  120 (366)
T ss_dssp             HHHHHHHTCCTTEE--EEEESSHHHHHHHHHHHHC-CSEEEEECSSSSCCTHHH--------HHHHHTTC--EEEE--E-
T ss_pred             HHHHHHccCCCccE--EEEeCCHHHHHHHHHHHhC-CCCEEEEecCCCcchhHH--------HHHHhcCC--eEEC--C-
Confidence            44556667665432  2334556699999999876 55555443  24454432        23455554  3332  2 


Q ss_pred             CCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCCC---CChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-cccEE
Q 013217          151 ESTGLVDYDMLEKTAILFRPKLIIAGASAYPRD---FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVV  226 (447)
Q Consensus       151 ~~~~~id~~~l~~~~~~~~~klii~~~~~~~~~---~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-~~Di~  226 (447)
                           -|+++|++++++ +||+|++++++|+..   .|+++|+++|++||+++++|++|..+.......+.+.. ++|++
T Consensus       121 -----~d~e~l~~~i~~-~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~di~  194 (366)
T d2aeua1         121 -----DKVGEILNKIDK-DTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLV  194 (366)
T ss_dssp             -----SCHHHHHTTCCT-TEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEE
T ss_pred             -----CCHHHHHHhcCC-CceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhhcCceEE
Confidence                 279999999988 899999987766543   46899999999999999999998766543333333222 58999


Q ss_pred             EeCCCcccCCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHH--
Q 013217          227 TTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL--  304 (447)
Q Consensus       227 ~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l--  304 (447)
                      ++|+||+++||++|++++++      ++.+++........ .+++.....++..+++.+.   . .++++..++++.+  
T Consensus       195 ~~S~sK~~~g~~~G~i~~~~------~~i~~~~~~~~~~g-~~~~~~~~~a~~~aL~tl~---~-~r~~~~~~~~~~i~~  263 (366)
T d2aeua1         195 VTSTDKLMEGPRGGLLAGKK------ELVDKIYIEGTKFG-LEAQPPLLAGIYRALKNFN---L-ERIRKAFERAKNFDL  263 (366)
T ss_dssp             EEETTSSSSSCSCEEEEEEH------HHHHHHHHHHHTTT-CBCCHHHHHHHHHHHHHCC---H-HHHHHHHHHHHHCCC
T ss_pred             EecccccccccceeEEEecH------HHHHHHHHHHhccc-ccCCHHHHHHHHHHHHhcc---H-HHHHHHHHHHHHHHH
Confidence            99999999999999999998      78777765432221 2223333344444665432   1 1234444444433  


Q ss_pred             --HHHHHH-----CCcEe-eeCCCCCeeEEecCCCCC----CCH-HHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEec
Q 013217          305 --ASRLVE-----LGYKL-VSGGSDNHLVLVDLRPMG----IDG-ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS  371 (447)
Q Consensus       305 --~~~L~~-----~g~~~-~~~~~~~~~~~v~~~~~~----~~~-~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~  371 (447)
                        .+.+..     .++.. .......+.++.......    .+. +...++|+++||.+    +|+...|...+.+||++
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ll~~~gV~~----ip~~~~p~~~~~lRis~  339 (366)
T d2aeua1         264 SKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIIT----ITVAGMPGASKSLRIDL  339 (366)
T ss_dssp             HHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCEEC----STTSSSCSSCCSEEEET
T ss_pred             HHHhhhhccccccccccCcccccCccchhccCCCcceeecccCHHHHHHHHHHhCCEEE----EECCCCCCCCCEEEEec
Confidence              233222     12211 111122344443322110    012 23445667899987    45543333456899998


Q ss_pred             CccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          372 PAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       372 ~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      ...++..+   +.+++.++|.+.++.
T Consensus       340 ~~~~~~~i---~~d~l~~ai~~~lK~  362 (366)
T d2aeua1         340 TSRDAERI---DDNYIIKAIVESIKM  362 (366)
T ss_dssp             TSGGGGGS---CHHHHHHHHHHHHHH
T ss_pred             cccchhhC---CHHHHHHHHHHHHHH
Confidence            76555222   345566666665553

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=2.5e-22  Score=190.64  Aligned_cols=319  Identities=18%  Similarity=0.137  Sum_probs=199.5

Q ss_pred             CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCC
Q 013217           31 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH  110 (447)
Q Consensus        31 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pg  110 (447)
                      ..+|+|++||.+.        ..|...|+..+...++|    +++++++|.+.     .+.++||++||.+++.++.++|
T Consensus        11 ~p~p~v~~A~~~a--------~~g~~~yg~~p~~~~le----~~lA~~~G~~~-----~~~~~sGt~A~~~al~a~~~~g   73 (343)
T d1m6sa_          11 KPTEEMRKAMAQA--------EVGDDVYGEDPTINELE----RLAAETFGKEA-----ALFVPSGTMGNQVSIMAHTQRG   73 (343)
T ss_dssp             CCCHHHHHHHHTC--------CCCCGGGTCCHHHHHHH----HHHHHHTTCSE-----EEEESCHHHHHHHHHHHHCCTT
T ss_pred             CCCHHHHHHHHhh--------hcCCcccCCCHHHHHHH----HHHHHHHCCCe-----EEEeCCHHHHHHHHHHHHhccC
Confidence            3578999998643        22334567778888888    58899999874     3445899999999999999999


Q ss_pred             CEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh-----CCcEEEEc-CCCCCC--
Q 013217          111 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIAG-ASAYPR--  182 (447)
Q Consensus       111 d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~-----~~klii~~-~~~~~~--  182 (447)
                      |.+++..+.+.++....       ....+......+.  +...+..|++.+++.+...     ++..+++. ..++++  
T Consensus        74 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  144 (343)
T d1m6sa_          74 DEVILEADSHIFWYEVG-------AMAVLSGVMPHPV--PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGR  144 (343)
T ss_dssp             CEEEEETTCHHHHSSTT-------HHHHHTCCEEEEE--CEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSB
T ss_pred             Cceeccccccceeeecc-------cccccccceeecc--ccccCccCHHHHHHhhhhhhcccccccccccccccccCCce
Confidence            99999887765443211       0111111233332  2245678999999888652     22333443 334443  


Q ss_pred             CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCC--CCCcccEEEeCCCcccCCCCCceEEeecCCcchhhHHHH
Q 013217          183 DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESA  257 (447)
Q Consensus       183 ~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~--~~~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~  257 (447)
                      ..   ++++|+++|+++|+++++|+++..+.........  .....+..+++.+|..+|..+|++....      +....
T Consensus       145 ~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------~~~~~  218 (343)
T d1m6sa_         145 VVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDR------DFIER  218 (343)
T ss_dssp             CCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECH------HHHHH
T ss_pred             ecCHHHHHHHHHHHHhcCeEEEeccccccccccccccchhhhccccccccccccccccccccccccccH------HHHhh
Confidence            33   4568888889999999999998654332221110  0012456777778878888887777766      33332


Q ss_pred             hhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCCCCHH
Q 013217          258 INNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGA  337 (447)
Q Consensus       258 i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~~  337 (447)
                      ..........+.+.....++..........    .+.+...++...+.+.+.+.+......+..++++++++...+.+..
T Consensus       219 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~a~  294 (343)
T d1m6sa_         219 ARKARKMLGGGMRQAGVLAAAGIIALTKMV----DRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLKVNAH  294 (343)
T ss_dssp             HHHHHHHHTCCCSSTHHHHHHHHHHHHHSS----TTHHHHHHHHHHHHHHHHHHTCBCCGGGCCSSEEEEECTTSSSCHH
T ss_pred             hHhhCcccccccchhHHHHHhhhhhhhhhH----HHHHHHHHHHHHhhhHHHHhccCccCCCCCceEEEEEeCCCcccHH
Confidence            222111011111122222222222211111    2244455666777777766443333333456778888877677888


Q ss_pred             HHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          338 RVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       338 ~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      ++.+.|.++||.++..         .+..+|++++..+|    +|||++++++|+++++.+
T Consensus       295 ~l~~~L~~~Gi~v~~~---------~~~~iRi~~~~~~t----~edid~~v~~l~~v~~~~  342 (343)
T d1m6sa_         295 GFIEALRNSGVLANAV---------SDTEIRLVTHKDVS----RNDIEEALNIFEKLFRKF  342 (343)
T ss_dssp             HHHHHHHHHTEECEEE---------ETTEEEEECCTTSC----HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCEEecC---------CCCEEEEECCCCCC----HHHHHHHHHHHHHHHHHh
Confidence            9999999999998642         24589998876666    999999999999998753

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=1.6e-21  Score=187.21  Aligned_cols=309  Identities=16%  Similarity=0.118  Sum_probs=197.2

Q ss_pred             cCeeEecCCCCCC--HHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-H
Q 013217           21 KSLELIASENFTS--RAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P   97 (447)
Q Consensus        21 ~~i~l~~~~n~~~--~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~   97 (447)
                      ..+.|.++||+..  +.+.+   +. -++    ||...+       .++    ++.+++++|++++    +|.+++|+ +
T Consensus        28 ~~i~L~~ne~p~~~~~~~~~---~~-l~r----YPd~~~-------~~L----r~~ia~~~gv~pe----~I~it~Gs~e   84 (354)
T d1fg7a_          28 GDVWLNANEYPTAVEFQLTQ---QT-LNR----YPECQP-------KAV----IENYAQYAGVKPE----QVLVSRGADE   84 (354)
T ss_dssp             CSEECSSCCCSSCCCCCCCC---CC-TTS----CCCSSC-------HHH----HHHHHHHHTSCGG----GEEEESHHHH
T ss_pred             CCEEeeCCCCCCCCCHHHHH---HH-Hhc----CCCCcH-------HHH----HHHHHHHhCCChH----HeeeccCchH
Confidence            4588889999753  22211   11 133    444321       234    3678899999986    45558998 8


Q ss_pred             HHHHHHHHhcCCCC-EEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 013217           98 ANFEVYTAILKPHD-RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG  176 (447)
Q Consensus        98 a~~~~~~al~~pgd-~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~  176 (447)
                      ++..++.++++||| .|++.+|.|..+.        ......|.  +++.++.+ +++.+|+++++..+.  ++++|+++
T Consensus        85 ai~~~~~~~~~pgd~~Vl~~~P~y~~~~--------~~~~~~g~--~v~~~~~~-~~~~~d~~~l~~~~~--~~~~v~~~  151 (354)
T d1fg7a_          85 GIELLIRAFCEPGKDAILYCPPTYGMYS--------VSAETIGV--ECRTVPTL-DNWQLDLQGISDKLD--GVKVVYVC  151 (354)
T ss_dssp             HHHHHHHHHCCTTTCEEEECSSSCTHHH--------HHHHHHTC--EEEECCCC-TTSCCCHHHHHTSCT--TEEEEEEE
T ss_pred             HHHHHHHHhhccccccccccccccccch--------hhhhccCc--eeeccccc-cccccchhhhhhccc--ccceeecc
Confidence            99999999999999 5777787765542        12344554  55555565 568899999987663  78999999


Q ss_pred             CCCCCC--CCChH---HHHHHHHHhCCEEEEehhhhccccccccCCCCCC--cccEEEeCCCccc--CCCCCceEEeecC
Q 013217          177 ASAYPR--DFDYP---RMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL--RGPRGGMIFFKKD  247 (447)
Q Consensus       177 ~~~~~~--~~~~~---~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~--~~Di~~~s~~K~l--~Gp~gG~i~~~~~  247 (447)
                      .++||+  ..+-+   .+.+.++ ++.++++|++++ .+......+....  ...+++.|++|++  +|.|.||++.++ 
T Consensus       152 ~pnNPtG~~~~~~~~~~~~~~~~-~~~~~iidd~~~-~f~~~~~~~~~~~~~~~~iv~~S~SK~~~laGlRiGy~i~~~-  228 (354)
T d1fg7a_         152 SPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYI-EFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANE-  228 (354)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTG-GGSGGGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECH-
T ss_pred             CCCccceeEeeeccccccccccc-ccccccccccch-hhccccccchhhcccccceEEeCCccccCCCccccccccccc-
Confidence            888886  44544   3444443 578888888754 3332221111111  2347789999985  688999999988 


Q ss_pred             CcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCc-EeeeCCCCCeeEE
Q 013217          248 PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGY-KLVSGGSDNHLVL  326 (447)
Q Consensus       248 ~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~~~~~~~  326 (447)
                           ++.+.+.+...+...   +.......+.++..-....+....+++.+.++.+.+.|.+.+. ..+.+ +.++++|
T Consensus       229 -----~~i~~l~~~~~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~p-~~~~f~~  299 (354)
T d1fg7a_         229 -----EVINLLMKVIAPYPL---STPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFD-SETNYIL  299 (354)
T ss_dssp             -----HHHHHHHHHSCSSCS---CHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECC-CSSSEEE
T ss_pred             -----hhhhhhhhhcCccch---hhHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHhCCCcceeCC-CCceEEE
Confidence                 777877766544332   2222221121221111122345567778888899999988654 33333 3456778


Q ss_pred             ecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHH
Q 013217          327 VDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH  392 (447)
Q Consensus       327 v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~  392 (447)
                      +++.    +..++.+.|.++||.++.+    ...+..++++|+++.   +    ++|++++.++|+
T Consensus       300 ~~~~----~~~~~~~~L~~~gIlvr~~----~~~~~~~~~lRisig---t----~ee~~~~l~aLk  350 (354)
T d1fg7a_         300 ARFK----ASSAVFKSLWDQGIILRDQ----NKQPSLSGCLRITVG---T----REESQRVIDALR  350 (354)
T ss_dssp             EEET----THHHHHHHHHHTTEECEEC----TTSTTCTTEEEEECC---C----HHHHHHHHHHHH
T ss_pred             EeCC----CHHHHHHHHHHCCcEEecC----CCCCCCCCEEEEEeC---C----HHHHHHHHHHHh
Confidence            8774    4678888999999998643    221123568999853   3    789998888775

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=1.8e-22  Score=198.52  Aligned_cols=344  Identities=15%  Similarity=0.058  Sum_probs=213.0

Q ss_pred             hcCeeEecCCC---CCC-HHHHHHHhhhhhccC--CCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCC-Cccceeeec
Q 013217           20 FKSLELIASEN---FTS-RAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE-NKWGVNVQP   92 (447)
Q Consensus        20 ~~~i~l~~~~n---~~~-~~v~~a~~~~~~~~~--~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~-~~~~~~v~~   92 (447)
                      ++.|+|-.+..   ..| +.+.+++.+.+....  ..+|+..      +...++.+...+++.+.+|.+. +.  -+|.+
T Consensus        38 ~~~I~l~~G~Pd~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~------~G~~~LR~aia~~~~~~~g~~~~~~--~~I~i  109 (420)
T d1vp4a_          38 KDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTT------EGDPVLKQQILKLLERMYGITGLDE--DNLIF  109 (420)
T ss_dssp             TTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCT------TCCHHHHHHHHHHHHHHHCCCSCCG--GGEEE
T ss_pred             CCcEecCCcCCCCccCCHHHHHHHHHHHHhhCCccccCCCCC------cCCHHHHHHHHHHHHHHhCCCCCCH--HHeEe
Confidence            46788865542   223 445566655554321  1133332      2223455555678888887641 11  25566


Q ss_pred             CCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhh----
Q 013217           93 LSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL----  167 (447)
Q Consensus        93 ~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~----  167 (447)
                      |+|+ +++..++.++++|||+|++.+|.|..+..        .+...|.  +++.++.++  ..+|++.++..+.+    
T Consensus       110 t~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~--------~~~~~g~--~~~~~~~~~--~~~~~~~l~~~~~~~~~~  177 (420)
T d1vp4a_         110 TVGSQQALDLIGKLFLDDESYCVLDDPAYLGAIN--------AFRQYLA--NFVVVPLED--DGMDLNVLERKLSEFDKN  177 (420)
T ss_dssp             EEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHTTTC--EEEEEEEET--TEECHHHHHHHHHHHHHT
T ss_pred             ccchhhhHHHHHHhhhccccccccccccccchhH--------HHHHHhh--hcccccccc--cccccchhhhhhhhhHHH
Confidence            8887 89999999999999999999998776532        2334554  444544543  35788887765432    


Q ss_pred             ---hCCc-EEEEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCC-----CcccEEEeCCCcc
Q 013217          168 ---FRPK-LIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-----KYCDVVTTTTHKS  233 (447)
Q Consensus       168 ---~~~k-lii~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~-----~~~Di~~~s~~K~  233 (447)
                         .+++ +++++.++||+  ..   ++++|.++|+++++++|+|+++ ..+.+.+....+.     +...++.+|++|+
T Consensus       178 ~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y-~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~  256 (420)
T d1vp4a_         178 GKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPY-GALRYEGETVDPIFKIGGPERVVLLNTFSKV  256 (420)
T ss_dssp             TCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSS-TTCBCSSCCCCCHHHHHCTTTEEEEEESTTT
T ss_pred             hhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchh-hhccccCcccccccccccccceeEEeccccc
Confidence               1233 45566778886  33   4689999999999999999985 5555443222221     1234677888898


Q ss_pred             c-CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHHHH-
Q 013217          234 L-RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-SPEFKVYQNKVVSNCRALASRLVE-  310 (447)
Q Consensus       234 l-~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~-~~~~~~~~~~~~~~~~~l~~~L~~-  310 (447)
                      + +|.|.||++.++      ++.+.+.+.......+++...+. +.+..+.... ....++..+.+.++.+.+.+.|.+ 
T Consensus       257 ~~~G~RiG~~~~~~------~~i~~l~~~~~~~~~~~~~~~q~-~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~  329 (420)
T d1vp4a_         257 LAPGLRIGMVAGSK------EFIRKIVQAKQSADLCSPAITHR-LAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEY  329 (420)
T ss_dssp             TCGGGCEEEEECCH------HHHHHHHHHHHHHHSSCCHHHHH-HHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccc------hhhhhhhhhhhhccccCchhhhh-hhhhhcccccccccchhHHHHhhhhcccchhhhhhh
Confidence            5 688999999987      67776654332222333333332 2233333211 112244556666677777777765 


Q ss_pred             ----CCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHH
Q 013217          311 ----LGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVA  386 (447)
Q Consensus       311 ----~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~  386 (447)
                          .|+++..+ ..+.++|++++. +.+..++.+.|.++||.+.++...+.. ....+++|+++... +    ++++++
T Consensus       330 ~~~~~g~~~~~p-~gg~f~~~~~~~-~~d~~~~~~~l~~~gV~v~PG~~F~~~-~~~~~~iRls~~~~-~----~e~l~~  401 (420)
T d1vp4a_         330 FSDIPGVKWVKS-EGGLFIWLTLPE-GFDTWEMFEYAKRKKVFYVPGRVFKVY-DEPSPSMRLSFCLP-P----DEKIVE  401 (420)
T ss_dssp             STTSTTCEECCC-SBSSEEEEECCT-TCCTTTTHHHHHHHTEECEEGGGGCTT-CCCCSEEEEECSSS-C----HHHHHH
T ss_pred             hccCCCcEEecC-CceEEEEEECCC-CCCHHHHHHHHHHCCeEEEechhhCCC-CCCCCEEEEEeCcC-C----HHHHHH
Confidence                37777543 456778888853 567778888999999999654322211 12246899986432 2    788988


Q ss_pred             HHHHHHHHHHHHH
Q 013217          387 IADFIHEGVEITL  399 (447)
Q Consensus       387 l~~~i~~~l~~~~  399 (447)
                      .++.|+++++...
T Consensus       402 a~~rL~~~l~~~~  414 (420)
T d1vp4a_         402 GIKRLREVVLEYG  414 (420)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            8898988887663

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.87  E-value=1.2e-21  Score=195.01  Aligned_cols=324  Identities=17%  Similarity=0.167  Sum_probs=199.5

Q ss_pred             CCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccc
Q 013217           53 PGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPK  132 (447)
Q Consensus        53 ~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~  132 (447)
                      .|.++|++++.++++|    +++++++|.+.     .+.++||++||..++.+++++||+++.....+.....|+.. ..
T Consensus        66 ~gd~~y~~~~~~~~le----~~~a~l~g~~~-----~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t-~~  135 (465)
T d1ax4a_          66 TGDEAYAGSRNYYDLK----DKAKELFNYDY-----IIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDT-TA  135 (465)
T ss_dssp             TCCCCSSSCHHHHHHH----HHHHHHHCCCE-----EEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHH-HH
T ss_pred             hhhhhhccChHHHHHH----HHHHHHHCCCE-----EEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhh-hH
Confidence            3556688888888998    57888999885     35569999999999999988776654433332111111100 00


Q ss_pred             cccccccceeEEEe---------cccCCCCCCCCHHHHHHHhhhhC---CcEEEEcCCCCCC---CC---ChHHHHHHHH
Q 013217          133 RRVSGTSIYFESMP---------YRLDESTGLVDYDMLEKTAILFR---PKLIIAGASAYPR---DF---DYPRMRQIAD  194 (447)
Q Consensus       133 ~~~~~~g~~~~~~~---------~~~~~~~~~id~~~l~~~~~~~~---~klii~~~~~~~~---~~---~~~~i~~ia~  194 (447)
                      ..+...|.  ..+.         ...++..+.+|++++++++++..   +.++++..+++.+   ..   ++++|+++|+
T Consensus       136 ~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~  213 (465)
T d1ax4a_         136 AHVELNGC--KAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAK  213 (465)
T ss_dssp             HHHHHTTC--EEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHH
T ss_pred             HHHHHcCC--eeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHH
Confidence            01112222  2221         12334567899999999997643   3455555444433   23   4678999999


Q ss_pred             HhCCEEEEehhhhcccccccc------CC--------CCCCcccEEEeCCCcccCCCCCceEEeecCCcchhhHHHHhh-
Q 013217          195 AVGALLMMDMAHISGLVAASV------VA--------DPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAIN-  259 (447)
Q Consensus       195 ~~g~~livD~a~~~g~~~~~~------~~--------~~~~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~-  259 (447)
                      +||+++++|++|..|....+.      ..        .....+|++++|.||.+++|+||++++++..    ...+... 
T Consensus       214 ~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~~g~l~~~~~~----~~~~~~~~  289 (465)
T d1ax4a_         214 QHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNE----EIFTLARQ  289 (465)
T ss_dssp             HHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSCEEEEESSCH----HHHHHHHH
T ss_pred             HcCCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEeecccCcccccceeEeecchH----HHHHhhhc
Confidence            999999999998765442211      00        0112368999999999999999999998741    1222211 


Q ss_pred             ---hccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCC--C-
Q 013217          260 ---NAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPM--G-  333 (447)
Q Consensus       260 ---~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~--~-  333 (447)
                         ........++.....+++++..+.+...   +++.++..+++++|.+.|++.|++++.+ ...+.+.++....  . 
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~a~~~~~~e~~~---~~~~~~~~~~~~~l~~~L~~~g~~~v~~-~~~~~~~~~~~~~~~~~  365 (465)
T d1ax4a_         290 RCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE---EEYLHYRIGQVKYLGDRLREAGIPIQYP-TGGHAVFVDCKKLVPQI  365 (465)
T ss_dssp             HHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHTTCCBCSS-CCSSEEEEESTTTCTTS
T ss_pred             cccccccCCCcchhhHHHHHHHhhhhHHhhh---HHHHHHHHHHHHHHHHHHHhhcCccccC-CCcceeeeehhhhcCCC
Confidence               1112223344444555555555554433   3456777888999999999999887764 3455555543211  1 


Q ss_pred             ----CC-HHHHHHHHhhcCeEEccCCCC--------CCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHHH
Q 013217          334 ----ID-GARVEKILDMASITLNKNSVP--------GDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITL  399 (447)
Q Consensus       334 ----~~-~~~~~~~L~~~gI~v~~~~~p--------~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~  399 (447)
                          .. ...+.+.|.+.||.+.....|        +...+...+.+|+++|..   .++++|||++++.|+++++...
T Consensus       366 ~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~---~~T~eeiD~vv~~l~~v~~~~~  441 (465)
T d1ax4a_         366 PGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARR---VYTNDHMDYIADALIGLKEKFA  441 (465)
T ss_dssp             CGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTT---SSCHHHHHHHHHHHHTTHHHHT
T ss_pred             ccccchhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCCC---CCCHHHHHHHHHHHHHHHHHHH
Confidence                11 223566677889976532111        111222346899987643   2359999999999999887653

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.87  E-value=8.7e-21  Score=183.18  Aligned_cols=327  Identities=14%  Similarity=0.107  Sum_probs=214.9

Q ss_pred             CCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh-
Q 013217           28 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-  106 (447)
Q Consensus        28 ~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al-  106 (447)
                      +++.++.+-++++...+.+.+         +...+.++.+|    +++++++|.++     .|.++|||.|+.+++.++ 
T Consensus         6 ~~p~~~~~~~~~v~~~l~~~~---------~~~G~~v~~fE----~~~~~~~g~k~-----ai~~~Sgt~Al~~al~al~   67 (371)
T d2fnua1           6 SEPCLDKEDKKAVLEVLNSKQ---------LTQGKRSLLFE----EALCEFLGVKH-----ALVFNSATSALLTLYRNFS   67 (371)
T ss_dssp             CCCCCCHHHHHHHHHHHTSSC---------CSSSHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHSS
T ss_pred             CCCCCCHHHHHHHHHHHcCCC---------ccCCHHHHHHH----HHHHHHHCcCe-----EEEEecHHHHHHHHHHHhc
Confidence            445566777788888776533         23346788898    57999999986     355699999999999998 


Q ss_pred             cCCCC--EEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCCCC
Q 013217          107 LKPHD--RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF  184 (447)
Q Consensus       107 ~~pgd--~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~~~  184 (447)
                      +++||  +|++++.++.+...        .+...|  .+++.+++++++ .++.+++++.+.+ +|++|++. +.++...
T Consensus        68 ~~~~~~~eVi~p~~t~~a~~~--------ai~~~G--~~pv~vDi~~~~-~~~~~~~~~~~~~-~t~avi~v-h~~G~~~  134 (371)
T d2fnua1          68 EFSADRNEIITTPISFVATAN--------MLLESG--YTPVFAGIKNDG-NIDELALEKLINE-RTKAIVSV-DYAGKSV  134 (371)
T ss_dssp             CCCTTSCEEEECSSSCTHHHH--------HHHHTT--CEEEECCBCTTS-SBCGGGSGGGCCT-TEEEEEEE-CGGGCCC
T ss_pred             ccCCCCCeeecccccccccce--------eeeccC--cccccccccccc-cccchhhhhhccc-hhhccccc-ccccccc
Confidence            55554  89998876655432        334455  477888888665 4666888887776 89988776 3555688


Q ss_pred             ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCceEEeecCCcchhhHHHHhhhccCC
Q 013217          185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFP  264 (447)
Q Consensus       185 ~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~  264 (447)
                      |+++|.++|+++|+++|.|+||+.|....+...-.+..+.++.+...|.+.+..||+++++++     ++.+++......
T Consensus       135 ~~~~i~~~~~~~~i~lIEDaaqa~Ga~~~~~~~G~~g~~~~~Sf~~~K~l~~g~GG~i~t~~~-----~~~~~~~~~~~~  209 (371)
T d2fnua1         135 EVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITTAEGGAVVTNDS-----ELHEKMKLFRSH  209 (371)
T ss_dssp             CHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCH-----HHHHHHHHHTBT
T ss_pred             ccccccccccccchhhccchhhccCceeccccCCccccccccccccccccccccceEEEeech-----hhhhhccccccc
Confidence            999999999999999999999999876655433232234455555569998888999999885     666665542221


Q ss_pred             CC------------CC-CCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeC----CCCCeeEE
Q 013217          265 GL------------QG-GPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSG----GSDNHLVL  326 (447)
Q Consensus       265 ~~------------~g-~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~----~~~~~~~~  326 (447)
                      +.            .| ...+..+.| +.++.++.  .+++..++..++++.+.+.|.+. ++.+...    ....+.+.
T Consensus       210 g~~~~~~~~~~~~~~G~n~r~sel~A-aigl~qL~--~l~~~~~~R~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~  286 (371)
T d2fnua1         210 GMLKKDFFEGEVKSIGHNFRLNEIQS-ALGLSQLK--KAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYP  286 (371)
T ss_dssp             TEEESSSSCEEESSCCCBCCCCHHHH-HHHHHHHT--THHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEE
T ss_pred             ccccccccccccccccccccccchhh-hhhhhhhh--hccchhhhhhhhhhhhccccccccccccccccccccccccccc
Confidence            10            01 111222222 22444443  36777888888899998989773 4444321    11122222


Q ss_pred             ecCCC-CCCCHHHHHHHHhhcCeEEccCCCCCCC----------CCC------CCCeEEEecCccccCCCCHHHHHHHHH
Q 013217          327 VDLRP-MGIDGARVEKILDMASITLNKNSVPGDK----------SAL------VPGGIRIGSPAMTTRGFSEKEFVAIAD  389 (447)
Q Consensus       327 v~~~~-~~~~~~~~~~~L~~~gI~v~~~~~p~~~----------~~~------~~~~iRig~~~~~~~g~~~~di~~l~~  389 (447)
                      +-+.. ...+.+++.+.|.++||.++..+.|.+.          ..+      ....+.+.++    -+|+++|++++++
T Consensus       287 i~~~~~~~~~r~~~~~~L~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~----~~lt~~di~~I~~  362 (371)
T d2fnua1         287 ILMHQKFFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCH----ANLNLESVQNIAH  362 (371)
T ss_dssp             EEECGGGGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCC----TTCCHHHHHHHHH
T ss_pred             ccccccchhHHHHHHHHHHHCCCCcceeCcccccCHHHHhccccCCCHHHHHHHhCeEECcCC----CCCCHHHHHHHHH
Confidence            22221 1123567899999999999876544321          010      0113555333    2467999999999


Q ss_pred             HHHHHHHH
Q 013217          390 FIHEGVEI  397 (447)
Q Consensus       390 ~i~~~l~~  397 (447)
                      .|.+.+++
T Consensus       363 ~i~~~~~~  370 (371)
T d2fnua1         363 SVLKTFES  370 (371)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            99998875

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.86  E-value=2.4e-20  Score=180.24  Aligned_cols=315  Identities=13%  Similarity=0.101  Sum_probs=197.6

Q ss_pred             HHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh-cCCCCEEEE
Q 013217           37 MEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPHDRIMG  115 (447)
Q Consensus        37 ~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al-~~pgd~Vl~  115 (447)
                      ++++.+++.+.|..        +-.+.++.+|    +.+++++|.++     .+.++|||.|+.+++.++ +++||+|++
T Consensus         4 ~~~~~~~l~~~~~~--------~~G~~~~~fE----~~~~~~~~~~~-----~~~~~SgT~Al~lal~~l~~~~gdeVi~   66 (374)
T d1o69a_           4 LKYIEEVFKSNYIA--------PLGEFVNRFE----QSVKDYSKSEN-----ALALNSATAALHLALRVAGVKQDDIVLA   66 (374)
T ss_dssp             HHHHHHHHHHTTTS--------CTTHHHHHHH----HHHHHHHCCSE-----EEEESCHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             HHHHHHHHhcCCcC--------CCCHHHHHHH----HHHHHHHCcCe-----EEEeCCHHHHHHHHHHHcCCCCcCEEEe
Confidence            35556666554421        1135678888    57889999986     355699999999999999 899999999


Q ss_pred             ecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHH--HHhhhhCCcEEEEcCCCCCCCCChHHHHHHH
Q 013217          116 LDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLE--KTAILFRPKLIIAGASAYPRDFDYPRMRQIA  193 (447)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~--~~~~~~~~klii~~~~~~~~~~~~~~i~~ia  193 (447)
                      ++..+.+...        .+...|.  +++.++++++....+++..+  ..... ++++|++.. .++...|+++|.++|
T Consensus        67 p~~t~~a~~~--------~~~~~g~--~pv~~Di~~~~~~~~~~~~~~~~~~~~-~~~aii~~~-~~G~~~d~~~i~~~~  134 (374)
T d1o69a_          67 SSFTFIASVA--------PICYLKA--KPVFIDCDETYNIDVDLLKLAIKECEK-KPKALILTH-LYGNAAKMDEIVEIC  134 (374)
T ss_dssp             ESSSCGGGTH--------HHHHTTC--EEEEECBCTTSSBCHHHHHHHHHHCSS-CCCEEEEEC-GGGCCCCHHHHHHHH
T ss_pred             CCcchHhhHH--------HHhhccc--eeEecccccccccccccccccchhccc-ccccccccc-cccchhhhHHHHHHh
Confidence            9987765532        3334454  77787787655555555443  33434 788887763 445578999999999


Q ss_pred             HHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCC--cccCCCCCceEEeecCCcchhhHHHHhhhccCCCC-----
Q 013217          194 DAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGL-----  266 (447)
Q Consensus       194 ~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~--K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~-----  266 (447)
                      +++|++||.|+||+.|....+.....  ..|+.++|+|  |.+.+..||+++++++     ++.+++......+.     
T Consensus       135 ~~~~i~vIED~a~a~g~~~~~~~~G~--~gd~~~fSf~~~K~l~tgeGG~i~tnn~-----~~~~~~~~~~~~g~~~~~~  207 (374)
T d1o69a_         135 KENDIVLIEDAAEALGSFYKNKALGT--FGEFGVYSYNGNKIITTSGGGMLIGKNK-----EKIEKARFYSTQARENCLH  207 (374)
T ss_dssp             HHTTCEEEEECTTCTTCEETTEETTS--SSSEEEEECCTTSSSCCSSCEEEEESCH-----HHHHHHHHHTBTCCCSSSS
T ss_pred             hccCcchhhhhhhhhcceECCeecCC--CCceEEEeccCccccccccceeehhhhH-----HHHHhhccccccccccccc
Confidence            99999999999999987765532222  3577777776  8888878899999875     66655543211110     


Q ss_pred             -----CCC-CcH-HHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEee-eCC--CCCee--EEecCCC---
Q 013217          267 -----QGG-PHN-HTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLV-SGG--SDNHL--VLVDLRP---  331 (447)
Q Consensus       267 -----~g~-p~~-~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~--~~~~~--~~v~~~~---  331 (447)
                           .|. ..+ ...||+  ++.++.  .+.+..++..++++.+.+.|.+...... ...  +..++  .+++...   
T Consensus       208 ~~~~~~G~N~rm~ei~Aai--g~~qL~--~l~~~i~~r~~i~~~y~~~L~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  283 (374)
T d1o69a_         208 YEHLDYGYNYRLSNVLGAI--GVAQME--VLEQRVLKKREIYEWYKEFLGEYFSFLDELENSRSNRWLSTALINFDKNEL  283 (374)
T ss_dssp             CCCSSCCCBCBCCHHHHHH--HHHHHT--THHHHHHHHHHHHHHHHHHHTTTEECCCCCTTEECCCSSEEEEESCCGGGS
T ss_pred             cccccCCccccccchhhhh--hHHHHh--hhhhhcchhHHHHHHHHhhccccccccccccCCCCChhheeeeeccccccc
Confidence                 111 112 222222  233332  3566677788888888888866311110 010  11111  1222110   


Q ss_pred             ---------------CCCCHHHHHHHHhhcCeEEccCCCCCCCCC-CC--------------CCeEEEecCccccCCCCH
Q 013217          332 ---------------MGIDGARVEKILDMASITLNKNSVPGDKSA-LV--------------PGGIRIGSPAMTTRGFSE  381 (447)
Q Consensus       332 ---------------~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~-~~--------------~~~iRig~~~~~~~g~~~  381 (447)
                                     ..-+..++.+.|.+.||.++..+.|.+..+ +.              ...|.+.++    .+|++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~gI~~r~~y~pl~~~~~~~~~~~~~~pna~~~~~~~i~LP~~----~~lt~  359 (374)
T d1o69a_         284 NACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSG----TAMSK  359 (374)
T ss_dssp             CCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCC----TTCCH
T ss_pred             cccccccccchhhccchhhHHHHHHHHHHCCCCEEEeCcchhhChhhhcCCCCCCHHHHHHHhCEEECcCC----CCCCH
Confidence                           011346788999999999886554433211 11              112444322    35779


Q ss_pred             HHHHHHHHHHHHHH
Q 013217          382 KEFVAIADFIHEGV  395 (447)
Q Consensus       382 ~di~~l~~~i~~~l  395 (447)
                      +|++++++.|.+++
T Consensus       360 ~di~~I~~~I~~~l  373 (374)
T d1o69a_         360 DDVYEISKLILKSI  373 (374)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999876

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.86  E-value=3.7e-21  Score=187.76  Aligned_cols=341  Identities=16%  Similarity=0.197  Sum_probs=206.1

Q ss_pred             CHHHHHHHHHHHH-HhhcCeeEecC----CC---CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHH
Q 013217            5 NPEVCEIITKEKE-RQFKSLELIAS----EN---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRAL   76 (447)
Q Consensus         5 ~~~~~~~~~~e~~-~~~~~i~l~~~----~n---~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~   76 (447)
                      || |..++.+-.+ ...+.|+|..+    ++   ++.+.|++++...+......+|+.      .....++.+.+.+++.
T Consensus        13 d~-i~~~~~~~~~d~~~~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~------~~G~~~lr~aia~~~~   85 (401)
T d7aata_          13 DP-ILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLP------IAGLADFTRASAELAL   85 (401)
T ss_dssp             CH-HHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCC------TTCCHHHHHHHHHHHH
T ss_pred             Ch-HHHHHHHHhCCCCCCcEEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCCCCCCCC------CCCCHHHHHHHHHHHh
Confidence            44 4455543222 12345898766    23   456899999887765543334433      2333456555556666


Q ss_pred             HHcCCC--CCccceeeecCC--cH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC-
Q 013217           77 AAFNLD--ENKWGVNVQPLS--GS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-  150 (447)
Q Consensus        77 ~~~g~~--~~~~~~~v~~~s--Gs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-  150 (447)
                      +..+..  ++.+ +.+....  |. .++..++.++++|||+|++++|.|+++..        .+...|.  +++.+++. 
T Consensus        86 ~~~~~~~~~~~i-~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~--------~~~~~g~--~~~~~~~~~  154 (401)
T d7aata_          86 GENSEAFKSGRY-VTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTP--------IFRDAGL--QLQAYRYYD  154 (401)
T ss_dssp             CTTCHHHHTTCE-EEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECEE
T ss_pred             ccCCcccCcCce-EEeccchHHHHHHHHHHhhHhhcCCCceEEEecCCCcchhh--------HHHHcCC--eEEEEeccc
Confidence            655533  3322 1121111  22 45566678889999999999998877642        3445665  44555443 


Q ss_pred             CCCCCCCHHHHHHHhhh--hCCcEEEEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC--
Q 013217          151 ESTGLVDYDMLEKTAIL--FRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--  221 (447)
Q Consensus       151 ~~~~~id~~~l~~~~~~--~~~klii~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~--  221 (447)
                      .+++.+|++.+.+.+..  .++++++++.++||+  ..   .+++|.++|++|++++++|+++ .++.+.+....+..  
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y-~~l~~~~~~~~~~~~~  233 (401)
T d7aata_         155 PKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAY-QGFASGDINRDAWALR  233 (401)
T ss_dssp             TTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESC-TTTTTSCHHHHTHHHH
T ss_pred             cccccccHHHHHHHHhcCCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccc-hhhhcCCcccchhhhh
Confidence            24678899999887753  367888889888886  44   4679999999999999999995 55555432111110  


Q ss_pred             ------cccEEEeCCCccc--CCCCCceEEeecCCcchhhHHHHhhh-------ccCCCCCCCCcHHHHHHHHHHHHH--
Q 013217          222 ------YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINN-------AVFPGLQGGPHNHTIGGLAVCLKH--  284 (447)
Q Consensus       222 ------~~Di~~~s~~K~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~-------~~~~~~~g~p~~~~~aal~~al~~--  284 (447)
                            .--+++.|++|.+  .|+|.|+++++.+      ..+....       .......+.+...+ +..+..+..  
T Consensus       234 ~~~~~~~~~~~~~s~sk~~~~~G~RiG~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~q-~~~~~~l~~~~  306 (401)
T d7aata_         234 HFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICR------DAEEAKRVESQLKILIRPMYSNPPMNGA-RIASLILNTPE  306 (401)
T ss_dssp             HHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECS------SHHHHHHHHHHHHHHHHHHHSSCCHHHH-HHHHHHHHCHH
T ss_pred             hhhhhhcccceeEeccccceeeccccceeecchH------HHHHHHHHHHHHHHHhhccccccchHHH-HHHHHhcCCHH
Confidence                  1126667888875  6899999999874      2222111       10011122222222 222222211  


Q ss_pred             h---cChhHHHHHHHHHHHHHHHHHHHHHCCc----EeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCC
Q 013217          285 A---QSPEFKVYQNKVVSNCRALASRLVELGY----KLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPG  357 (447)
Q Consensus       285 ~---~~~~~~~~~~~~~~~~~~l~~~L~~~g~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~  357 (447)
                      +   ....++++.+++.++++.+.+.|++.|.    ..+.+ ...++.|+.     ++.+.+.++++++||.+    .| 
T Consensus       307 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~-~~G~F~~~~-----ls~e~~~~L~~e~gV~~----~p-  375 (401)
T d7aata_         307 LRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITD-QIGMFCFTG-----LKPEQVERLTKEFSIYM----TK-  375 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHH-CCSSEEECC-----CCHHHHHHHHHHHCEEC----CT-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceECC-CCeEEEecC-----CCHHHHHHHHHhCCEEE----CC-
Confidence            0   1123456677788888999999988653    22222 234556653     35667777789999987    23 


Q ss_pred             CCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          358 DKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       358 ~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                              ++||++..++     ++++++++++|++++
T Consensus       376 --------g~Ris~a~~~-----~~~i~~la~ai~~v~  400 (401)
T d7aata_         376 --------DGRISVAGVA-----SSNVGYLAHAIHQVT  400 (401)
T ss_dssp             --------TCEEEGGGCC-----TTTHHHHHHHHHHHH
T ss_pred             --------CcEEEeccCC-----HHHHHHHHHHHHHHh
Confidence                    4699875544     678999999999876

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.85  E-value=1.5e-19  Score=171.09  Aligned_cols=319  Identities=13%  Similarity=0.067  Sum_probs=192.7

Q ss_pred             ecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHH
Q 013217           26 IASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY  103 (447)
Q Consensus        26 ~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~  103 (447)
                      .+|+|+  ++|+|++||.+...+. ..+      |+..+...    .++++++++||.+.+    .+.++|||+||..++
T Consensus         7 f~s~n~~g~~P~v~~A~~~a~~~~-~~~------~~~~~~~~----~l~~~la~~~g~~~~----v~f~~sGt~An~~a~   71 (345)
T d1v72a1           7 FSSDNIAGASPEVAQALVKHSSGQ-AGP------YGTDELTA----QVKRKFCEIFERDVE----VFLVPTGTAANALCL   71 (345)
T ss_dssp             CSCGGGCCCCHHHHHHHHHTTSSC-CCS------TTCSHHHH----HHHHHHHHHHTSCCE----EEEESCHHHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHhccC-ccc------cCCCHHHH----HHHHHHHHHHCCCcE----EEECCchHHHHHHHH
Confidence            367886  4899999997643321 122      23333333    445789999998753    345588999999999


Q ss_pred             HHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh-----CCcEEEE--c
Q 013217          104 TAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIA--G  176 (447)
Q Consensus       104 ~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~-----~~klii~--~  176 (447)
                      .+++.+++.+++....|.++...+.     .....+..+.  +...+ ..+..|++.+++.+.+.     .+..+++  +
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  143 (345)
T d1v72a1          72 SAMTPPWGNIYCHPASHINNDECGA-----PEFFSNGAKL--MTVDG-PAAKLDIVRLRERTREKVGDVHTTQPACVSIT  143 (345)
T ss_dssp             HTSCCTTEEEEECTTSHHHHSSTTH-----HHHHTTSCEE--EECCC-GGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEE
T ss_pred             HHHHhcCCccccccccceeeechhh-----HHHhcCcccc--ccccc-ccccccHHHhhhhhcccccccccccceeeeee
Confidence            9999999999988877666543221     1122233222  22222 35679999999988652     2333332  2


Q ss_pred             CCCCCC-C---CChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC----cccEEEeCCCcccCCCCCceEEeecCC
Q 013217          177 ASAYPR-D---FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSLRGPRGGMIFFKKDP  248 (447)
Q Consensus       177 ~~~~~~-~---~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~----~~Di~~~s~~K~l~Gp~gG~i~~~~~~  248 (447)
                      ..+..+ .   .+++++.++|++||+++++|++|..+............    ..+.++.+.+|...+..++.+....  
T Consensus       144 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  221 (345)
T d1v72a1         144 QATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNT--  221 (345)
T ss_dssp             SSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSSCEEEEESSG--
T ss_pred             ccccccccccchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCccccccccccccccchh--
Confidence            222222 2   35678888999999999999998765443332221111    2445666666654333333333322  


Q ss_pred             cchhhHHHHh-hhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEeeeCCCCCeeEE
Q 013217          249 VLGVELESAI-NNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGSDNHLVL  326 (447)
Q Consensus       249 ~~~~~~~~~i-~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~  326 (447)
                          ...... ....+.+....+.  . .+.+.+........+.....+..++.+.+.+.+.+ .|+.+..+ +.+++++
T Consensus       222 ----~~~~~~~~~~~~~~~~~~~~--~-~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p-~~~niv~  293 (345)
T d1v72a1         222 ----SLATEMSYRRKRAGHLSSKM--R-FLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGG-TEANILF  293 (345)
T ss_dssp             ----GGHHHHHHHHHHTTCCCSST--H-HHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESC-CCSSEEE
T ss_pred             ----hhhhhccccccccccccchh--h-HHhhhhHHHHHHhhhhhhccchhhHHHHHHHHHHhcCCcEeccC-CCccEEE
Confidence                222111 1111111111112  1 22233344444445566677777888888888888 57776544 4567777


Q ss_pred             ecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          327 VDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       327 v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                      +++.      ..+.+.|.++||.+...       +..++.+|++++..||    +|||++++++|+++
T Consensus       294 ~~~~------~~~~~~L~~~gi~v~~~-------~~~~~~lR~~~~~~~T----~edid~~le~lr~a  344 (345)
T d1v72a1         294 CRLD------SAMIDALLKAGFGFYHD-------RWGPNVVRFVTSFATT----AEDVDHLLNQVRLA  344 (345)
T ss_dssp             EEEC------HHHHHHHHHTTCBCBCS-------SSSTTEEEEECCTTCC----HHHHHHHHHHHHHT
T ss_pred             EEcC------HHHHHHHHHcCCCcccc-------CCCCCEEEEECCCCCC----HHHHHHHHHHHHHh
Confidence            7653      35667788889987432       2235689999998888    99999999999864

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.84  E-value=1.3e-19  Score=179.23  Aligned_cols=310  Identities=14%  Similarity=0.035  Sum_probs=196.0

Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCCCc------cceeeecCCcHHHHHHHHHHhcC----------CC--------C-EEE
Q 013217           60 GNEYIDELETLCQKRALAAFNLDENK------WGVNVQPLSGSPANFEVYTAILK----------PH--------D-RIM  114 (447)
Q Consensus        60 g~~~~~~le~~~~~~~~~~~g~~~~~------~~~~v~~~sGs~a~~~~~~al~~----------pg--------d-~Vl  114 (447)
                      ..+...++|..+.+|+++++|.+.+.      ...-+.+++||.||..++.+...          +|        . .|+
T Consensus       107 ~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~  186 (476)
T d1js3a_         107 ASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAY  186 (476)
T ss_dssp             GCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEE
T ss_pred             hhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEE
Confidence            34556789999999999999997421      11124446667898887754321          11        1 345


Q ss_pred             EecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhC-----CcEEEEc-CCCCCC-CCChH
Q 013217          115 GLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR-----PKLIIAG-ASAYPR-DFDYP  187 (447)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~-----~klii~~-~~~~~~-~~~~~  187 (447)
                      +.+-.|.+.        .+.+.+.|.+...  +++| +++.+|+++|++++++..     |-+|+.+ .++..+ ..|++
T Consensus       187 ~s~~~H~Si--------~ka~~~lGl~~~~--v~~d-~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~  255 (476)
T d1js3a_         187 ASDQAHSSV--------ERAGLIGGVKLKA--IPSD-GKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLL  255 (476)
T ss_dssp             EETTCCHHH--------HHHHHHHTCEEEE--ECCC-TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHH
T ss_pred             ecccccHHH--------HHHHHhcCceEEE--eccC-CCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHH
Confidence            554433322        1345566765444  4466 568999999999997632     4455555 333333 78999


Q ss_pred             HHHHHHHHhCCEEEEehhhhccccccccCCC---CCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHH-hh---
Q 013217          188 RMRQIADAVGALLMMDMAHISGLVAASVVAD---PFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA-IN---  259 (447)
Q Consensus       188 ~i~~ia~~~g~~livD~a~~~g~~~~~~~~~---~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~-i~---  259 (447)
                      +|+++|++||+|++||+|+...+........   .++.+|.++.++|||+..|.+ |++++++.     ..... +.   
T Consensus       256 ~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l~r~~-----~~~~~~~~~~~  330 (476)
T d1js3a_         256 EVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRR-----TDLTGAFKLDP  330 (476)
T ss_dssp             HHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCH-----HHHHGGGC---
T ss_pred             HHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCcceeecccch-----HHHHHHHhcCh
Confidence            9999999999999999997554444332221   233689999999999999988 88888863     11111 10   


Q ss_pred             -------hc-------cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEeeeCCCCCee
Q 013217          260 -------NA-------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGSDNHL  324 (447)
Q Consensus       260 -------~~-------~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~  324 (447)
                             ..       ...+.+++.... ...++.+++.+...++.+.+++..+++++|.+.|++ .+++++.+. ...+
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~sr~~~-al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p-~l~i  408 (476)
T d1js3a_         331 VYLKHSHQGSGLITDYRHWQLPLGRRFR-SLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEV-TLGL  408 (476)
T ss_dssp             ---------CCSCCCGGGSSSCSCCCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCC-CSSE
T ss_pred             hhhccccccccccccccccccccchhhH-HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCC-ceEE
Confidence                   00       001112332322 335677888887889999999999999999999988 589988653 2333


Q ss_pred             EEecCCCCCCCHHHHHHHHhhcC-eEEccCCCCCCCCCCCCCeEEEecC-ccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          325 VLVDLRPMGIDGARVEKILDMAS-ITLNKNSVPGDKSALVPGGIRIGSP-AMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       325 ~~v~~~~~~~~~~~~~~~L~~~g-I~v~~~~~p~~~~~~~~~~iRig~~-~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      +.+.+.+.+.-.+.+.+.|.+.| +.+....+-      ....+|++.. ..|+    ++|++.+.+.|++....
T Consensus       409 V~Fr~~~~d~~n~~l~~~l~~~G~~~~s~t~~~------g~~~lR~~i~n~~Tt----~~did~~~~~i~~~a~~  473 (476)
T d1js3a_         409 VCFRLKGSDGLNEALLERINSARKIHLVPCRLR------GQFVLRFAICSRKVE----SGHVRLAWEHIRGLAAE  473 (476)
T ss_dssp             EEEEESSCHHHHHHHHHHHHHHTSCBCEEEEET------TEEEEEEECCCTTCC----HHHHHHHHHHHHHHHHH
T ss_pred             EEEEccCChHHHHHHHHHHHhcCCEEEeeeeEC------CEEEEEEEeCCCCCC----HHHHHHHHHHHHHHHHH
Confidence            33333321101134556666665 333221111      1236999865 3455    99999999999887654

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.84  E-value=1.7e-19  Score=171.40  Aligned_cols=303  Identities=17%  Similarity=0.140  Sum_probs=192.8

Q ss_pred             cCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC---CCCCccceeeecCCc
Q 013217           21 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN---LDENKWGVNVQPLSG   95 (447)
Q Consensus        21 ~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g---~~~~~~~~~v~~~sG   95 (447)
                      +-|.|..+||+  +|+.+.+++.+.+.......||..    |   ..++.+    .+++.++   .+++    +|.+++|
T Consensus        20 d~~~l~~~enp~~~p~~i~~~~~~~~~~~~~~~yp~~----g---~~~Lr~----aia~~~~~~~v~~d----~I~it~G   84 (334)
T d2f8ja1          20 DKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYYDS----P---DEELIE----KILSYLDTDFLSKN----NVSVGNG   84 (334)
T ss_dssp             CSEECSSCCCSSCCCHHHHHHHHHHCCTTGGGSCCCS----S---CHHHHH----HHHHHHTCSSCCGG----GEEEEEH
T ss_pred             CceEEECCCCCCCCCHHHHHHHHHHhhcchhcCCCCC----C---cHHHHH----HHHHHhcccCCCcc----eEEecCc
Confidence            55777788884  578888888776654322233322    1   123443    3444443   4444    4556888


Q ss_pred             H-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEE
Q 013217           96 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII  174 (447)
Q Consensus        96 s-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii  174 (447)
                      + +++.++    +++||+|++.+|.|+++..        .+...|.  +++.++++++....+      ...+ ++++++
T Consensus        85 ~~~~l~~l----~~~~d~v~i~~P~y~~~~~--------~~~~~g~--~~v~v~~~~~~~~~~------~~~~-~~~~l~  143 (334)
T d2f8ja1          85 ADEIIYVM----MLMFDRSVFFPPTYSCYRI--------FAKAVGA--KFLEVPLTKDLRIPE------VNVG-EGDVVF  143 (334)
T ss_dssp             HHHHHHHH----HHHSSEEEECSSCCHHHHH--------HHHHHTC--CEEECCCCTTSCCCC------CCCC-TTEEEE
T ss_pred             chhHHHHH----hhhcccccccccccccccc--------chhccCC--ccccccccccccccc------cccc-cceEEE
Confidence            8 565544    4567999999988766531        2344554  666666764432221      1223 789999


Q ss_pred             EcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCC-CcccEEEeCCCccc--CCCCCceEEeecCCc
Q 013217          175 AGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-KYCDVVTTTTHKSL--RGPRGGMIFFKKDPV  249 (447)
Q Consensus       175 ~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~-~~~Di~~~s~~K~l--~Gp~gG~i~~~~~~~  249 (447)
                      ++.|+||+  ..+.++|.+++ ++++++++|++++.. .......... ...-+++.|++|++  +|.|.|+++.++   
T Consensus       144 l~nP~NPtG~~~s~~~l~~~~-~~~~~ii~Dd~~~~~-~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~---  218 (334)
T d2f8ja1         144 IPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYYEF-HGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASE---  218 (334)
T ss_dssp             EESSCTTTCCCCCHHHHHHHH-TTTCEEEEECTTGGG-TCCCCGGGGGTCSSEEEEEESTTTSSCTTTCEEEEEECH---
T ss_pred             ecccccccceeecHHHhhccc-cceeEEeecccchhh-cccccccccccCceEEEEecCccccchhhhhhhhcccch---
Confidence            98888886  67888887765 479999999986432 2111111110 12348889999975  578889999987   


Q ss_pred             chhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecC
Q 013217          250 LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDL  329 (447)
Q Consensus       250 ~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~  329 (447)
                         ++.+++........   .+.....+..+.+..  ...+++..+.+.++++.+.+.|++.|+++..+ . ..++|+.+
T Consensus       219 ---~~i~~l~~~~~~~~---~s~~~~~~a~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~-~-g~f~~~~~  288 (334)
T d2f8ja1         219 ---KFIDAYNRVRLPFN---VSYVSQMFAKVALDH--REIFEERTKFIVEERERMKSALREMGYRITDS-R-GNFVFVFM  288 (334)
T ss_dssp             ---HHHHHHHHHSCTTC---SCHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHTCEECCC-C-SSEEEEEC
T ss_pred             ---HHHHHHHHhhcccc---cchhhhhhccccccc--ccchhhHHHHHHHHHHHHHHHHHHCCCeECCC-C-ceEEEEEC
Confidence               78887776543322   222223323333432  23456778888999999999999999988753 2 33567766


Q ss_pred             CCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217          330 RPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       330 ~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~  393 (447)
                      ..  .+.+++.+.|.++||.++..          ++++|+++.   +    .+|++++.++|++
T Consensus       289 ~~--~~~~~~~~~L~~~GI~vr~~----------~~~vRis~g---~----~ee~~~l~~~l~~  333 (334)
T d2f8ja1         289 EK--EEKERLLEHLRTKNVAVRSF----------REGVRITIG---K----REENDMILRELEV  333 (334)
T ss_dssp             CH--HHHHHHHHHHHHTTEECEEE----------TTEEEEECC---C----HHHHHHHHHHHHH
T ss_pred             CC--CCHHHHHHHHHHCCCEECCC----------CCeEEEEcC---C----HHHHHHHHHHHhc
Confidence            43  25678888999999998531          358999863   3    7888988888764

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=99.84  E-value=2.7e-19  Score=170.63  Aligned_cols=222  Identities=20%  Similarity=0.202  Sum_probs=158.7

Q ss_pred             CCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcc
Q 013217           50 EGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFM  129 (447)
Q Consensus        50 ~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~  129 (447)
                      .||...|  .|++....+|    ++++++.|.+.     .+...||..|+.+++.++++|||+|++....|++.....  
T Consensus        53 ~~~~Y~R--~~nPT~~~LE----~~la~LEgg~~-----a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~--  119 (397)
T d1y4ia1          53 SGYIYTR--LGNPTTDALE----KKLAVLERGEA-----GLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFL--  119 (397)
T ss_dssp             SSSCCCT--TSCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHH--
T ss_pred             CCceeeC--CCCHHHHHHH----HHHHHHhCCcc-----ceeehHHHHHHHHHHhhccCCCCeeeeecccccccchhh--
Confidence            3555555  3778888998    58889998875     344689999999999999999999999998887753211  


Q ss_pred             ccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhh
Q 013217          130 TPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHI  207 (447)
Q Consensus       130 ~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~  207 (447)
                        ...+...|.  ++..+  |    .-|++.+++++++ +||+|++..+.||+  +.|+++|+++|+++|+++++|.+.+
T Consensus       120 --~~~l~~~Gi--~~~~v--d----~~d~~~~~~~i~~-~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~a  188 (397)
T d1y4ia1         120 --SHSMPKFGI--NVRFV--D----AGKPEEIRAAMRP-ETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFM  188 (397)
T ss_dssp             --HTHHHHTTC--EEEEE--C----TTSHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTT
T ss_pred             --hcccCCCce--Eeecc--C----CCCHHHHHHhcCC-CCcEEEecCCcccceeecccHHHHHHhhcCCceEEecCccc
Confidence              011122343  44443  2    2478999999987 99999999888887  7899999999999999999999854


Q ss_pred             ccccccccCCCCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhh--hc-cCCCCCCCCcHHHHHHHHH
Q 013217          208 SGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAIN--NA-VFPGLQGGPHNHTIGGLAV  280 (447)
Q Consensus       208 ~g~~~~~~~~~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~--~~-~~~~~~g~p~~~~~aal~~  280 (447)
                      ..     ....|+. ++|+++.|+.|+++|..   ||.+++++      +...+++  .. ...|  +.++...   .+.
T Consensus       189 tP-----~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~------~~~~~~r~~~~~~~~G--~~l~p~~---a~l  252 (397)
T d1y4ia1         189 SP-----YCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQ------EFIDQARFVGLKDITG--GCMSPFN---AWL  252 (397)
T ss_dssp             CT-----TTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECH------HHHHHHHHTHHHHTTC--CCCCHHH---HHH
T ss_pred             Cc-----ccCcchhcCCCEEEEehhhhcCCCcceeeeccCCCH------HHHHHHHHHHHHhCcC--CcCCHHH---HHH
Confidence            33     2345665 69999999999998754   48888887      4444322  11 1112  1223222   223


Q ss_pred             HHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-Cc
Q 013217          281 CLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GY  313 (447)
Q Consensus       281 al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~  313 (447)
                      .++-+.+  +.-++++..+|+..+++.|++. .+
T Consensus       253 ~~rgl~T--L~lRm~~~~~nA~~lA~~L~~hp~V  284 (397)
T d1y4ia1         253 TLRGVKT--LGIRMERHCENALKIARFLEGHPSI  284 (397)
T ss_dssp             HHHHHTT--HHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred             HHcCcCc--HHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            4454443  5678999999999999999983 44

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.83  E-value=9.1e-20  Score=178.44  Aligned_cols=349  Identities=15%  Similarity=0.115  Sum_probs=199.7

Q ss_pred             HHHHHHHHHHH-hhcCeeEecC----CC---CCCHHHHHHHhhhhhccC-CCCCCCCcccCchhHHHHHHHHHHHHHHHH
Q 013217            8 VCEIITKEKER-QFKSLELIAS----EN---FTSRAVMEAVGSCLTNKY-SEGLPGKRYYGGNEYIDELETLCQKRALAA   78 (447)
Q Consensus         8 ~~~~~~~e~~~-~~~~i~l~~~----~n---~~~~~v~~a~~~~~~~~~-~~g~~~~~~~~g~~~~~~le~~~~~~~~~~   78 (447)
                      |..+..+-++- ..+.|+|..+    ++   ++.|.|++++.....+.. ..+|      +......++.+.+.+++.+.
T Consensus        17 i~~l~~~~~~d~~~~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y------~p~~G~p~lreaia~~~~~~   90 (412)
T d1ajsa_          17 VFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEY------LPILGLAEFRTCASRLALGD   90 (412)
T ss_dssp             HHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCC------CCTTCCHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHhcCCCCCcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCCcCCCC------CCCCCCHHHHHHHHHHHhcc
Confidence            55555542211 1355898776    22   456899998766544321 1223      33333456665555666555


Q ss_pred             cCCC--CCccceeeecCCcHHHHHHHHH-------HhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEeccc
Q 013217           79 FNLD--ENKWGVNVQPLSGSPANFEVYT-------AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL  149 (447)
Q Consensus        79 ~g~~--~~~~~~~v~~~sGs~a~~~~~~-------al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  149 (447)
                      .+.+  .+.+ +.++..+++.++..+..       ++++|||+|++.+|.++++..        .+...|.....++...
T Consensus        91 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~--------~~~~~G~~~v~~~~~~  161 (412)
T d1ajsa_          91 DSPALQEKRV-GGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNG--------VFTTAGFKDIRSYRYW  161 (412)
T ss_dssp             TCHHHHTTCE-EEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHH--------HHHHTTCSCEEEEECE
T ss_pred             CCcccccccc-eeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhHH--------HHHHcCCeEEEeeccc
Confidence            4432  3322 23333333344433322       347999999999998876632        3345554322222222


Q ss_pred             CCCCCCCCHHHHHHHhhh--hCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC--
Q 013217          150 DESTGLVDYDMLEKTAIL--FRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF--  220 (447)
Q Consensus       150 ~~~~~~id~~~l~~~~~~--~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~--  220 (447)
                      +.+.+..|++.+++.+..  .++++++++.++||+  ..+   +++|.++|++||+++++|+++ .++.+.+....++  
T Consensus       162 ~~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y-~~l~~~~~~~~~~~~  240 (412)
T d1ajsa_         162 DTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAY-QGFASGNLEKDAWAI  240 (412)
T ss_dssp             ETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESC-TTTTTSCHHHHTHHH
T ss_pred             ccccccccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhh-hhhhcCCcccchhhh
Confidence            335567899988876543  266788888888886  444   689999999999999999995 5555443211110  


Q ss_pred             ------CcccEEEeCCCccc--CCCCCceEEeecCCcc-hhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHH-----hc
Q 013217          221 ------KYCDVVTTTTHKSL--RGPRGGMIFFKKDPVL-GVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH-----AQ  286 (447)
Q Consensus       221 ------~~~Di~~~s~~K~l--~Gp~gG~i~~~~~~~~-~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~-----~~  286 (447)
                            ....+++.|++|++  .|+|.|++++...... ...+...+.........+.+... ..++...+..     ..
T Consensus       241 ~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  319 (412)
T d1ajsa_         241 RYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQG-ARIVARTLSDPELFHEW  319 (412)
T ss_dssp             HHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHH-HHHHHHHHHSHHHHHHH
T ss_pred             hhhhhhcccccccccccccccCCCCCccccccchhHHHHHHHHHHHHHHHhhccccccchHH-HHHHHHHhcCHHHHHHH
Confidence                  01346777888875  6888899998874110 00011111111111122222222 2222222210     11


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHCCcE----eeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCC
Q 013217          287 SPEFKVYQNKVVSNCRALASRLVELGYK----LVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSAL  362 (447)
Q Consensus       287 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~  362 (447)
                      ...++...+++.++++.+.+.|++.+..    .+.. ...++.|+     +++.+++.++++++||.+    +||     
T Consensus       320 ~~~~~~~~~~l~~~r~~l~~~L~~~~~~~~~~~i~~-~~G~F~~~-----~ls~~~v~~L~~e~gV~~----vpg-----  384 (412)
T d1ajsa_         320 TGNVKTMADRILSMRSELRARLEALKTPGTWNHITD-QIGMFSFT-----GLNPKQVEYLINQKHIYL----LPS-----  384 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHH-CCSSEEEC-----CCCHHHHHHHHHTTCEEC----CTT-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeecC-CCeEEEec-----CCCHHHHHHHHHhCCEEE----eCC-----
Confidence            1234566777888888899999886542    2221 23445453     335677888889999987    342     


Q ss_pred             CCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          363 VPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       363 ~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                          .||+....+     ++++++++++|+++++.
T Consensus       385 ----~Ri~~ag~~-----~~~i~~~a~aI~~av~~  410 (412)
T d1ajsa_         385 ----GRINMCGLT-----TKNLDYVATSIHEAVTK  410 (412)
T ss_dssp             ----SEEEGGGCC-----TTTHHHHHHHHHHHHHH
T ss_pred             ----CeEEeccCC-----HHHHHHHHHHHHHHHHh
Confidence                388754333     68899999999999875

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=99.83  E-value=3.7e-19  Score=169.66  Aligned_cols=219  Identities=19%  Similarity=0.224  Sum_probs=155.4

Q ss_pred             CCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccc
Q 013217           51 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT  130 (447)
Q Consensus        51 g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~  130 (447)
                      +|...|  .+++....+|    ++++++.|.+.     .+...||..|+.+++.+++++||+|++.+..|++.....   
T Consensus        50 ~~~Y~R--~~nPT~~~LE----~~la~LEg~~~-----a~~~~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~---  115 (392)
T d1gc0a_          50 GHFYSR--ISNPTLNLLE----ARMASLEGGEA-----GLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFL---  115 (392)
T ss_dssp             ---------CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHH---
T ss_pred             CceecC--CCChHHHHHH----HHHHHHhCCcc-----eeehhhHHHHHHHHHHhhccCCCeeecccccchhhhhhh---
Confidence            444444  3678888898    57889999875     344699999999999999999999999998888764211   


Q ss_pred             cccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhc
Q 013217          131 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHIS  208 (447)
Q Consensus       131 ~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~  208 (447)
                       ...+...|.  ++..+  |    .-|++++++++++ +||+|++.++.||+  +.|+++|+++|+++|+++++|.+.+.
T Consensus       116 -~~~~~~~Gi--~~~~~--d----~~d~~~~~~ai~~-~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvDnT~at  185 (392)
T d1gc0a_         116 -HHGIGEFGV--KLRHV--D----MADLQALEAAMTP-ATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCT  185 (392)
T ss_dssp             -HHTGGGGTC--EEEEE--C----TTCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTH
T ss_pred             -hhhhccCCc--ccccC--C----ccCHHHHHHhCCC-CCeEEEecccccceeeecchHHHHHHHHhcCCEEEEecCccC
Confidence             011222343  44442  2    2578999999987 89999999888887  88999999999999999999999755


Q ss_pred             cccccccCCCCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhh--hcc-CCCCCCCCcHHHHHHHHHH
Q 013217          209 GLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAIN--NAV-FPGLQGGPHNHTIGGLAVC  281 (447)
Q Consensus       209 g~~~~~~~~~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~--~~~-~~~~~g~p~~~~~aal~~a  281 (447)
                      +..     ..|+. ++|+++.|++|+++|..   +|.+++++      +...+++  ... ..|  +.++...   .+..
T Consensus       186 P~~-----~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~------~~~~~~r~~~~~~~~G--~~~~p~d---a~ll  249 (392)
T d1gc0a_         186 PYL-----QRPLELGADLVVHSATKYLSGHGDITAGIVVGSQ------ALVDRIRLQGLKDMTG--AVLSPHD---AALL  249 (392)
T ss_dssp             HHH-----CCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECH------HHHHHHHHTHHHHHTC--CCCCHHH---HHHH
T ss_pred             ccc-----cChHHhCCCEEEEecceeecCCcccccccccchh------HHHHHHHHHHHHHccC--CcCChhh---HHHH
Confidence            433     45666 69999999999998743   48888877      4444332  111 112  2223322   2334


Q ss_pred             HHHhcChhHHHHHHHHHHHHHHHHHHHHHC
Q 013217          282 LKHAQSPEFKVYQNKVVSNCRALASRLVEL  311 (447)
Q Consensus       282 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  311 (447)
                      ++.+.+  +..++++..+|+..+++.|++.
T Consensus       250 ~rgl~T--L~lRm~~~~~nA~~lA~~L~~h  277 (392)
T d1gc0a_         250 MRGIKT--LNLRMDRHCANAQVLAEFLARQ  277 (392)
T ss_dssp             HHHHTT--HHHHHHHHHHHHHHHHHHHHTC
T ss_pred             Hhcccc--HHHHHHHHHHHHHHHHHHHHhC
Confidence            455443  6778999999999999999883

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.82  E-value=2.8e-20  Score=178.84  Aligned_cols=340  Identities=12%  Similarity=0.052  Sum_probs=195.7

Q ss_pred             eeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCc-ccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHH
Q 013217           23 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKR-YYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE  101 (447)
Q Consensus        23 i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~-~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~  101 (447)
                      .|..|++..+|++|+++|...+.+.+..|..... .+.+.++.+.++ .+++.++++|+++.++. +.+..+||+.++.+
T Consensus         5 ~~F~pGP~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~-~~r~~l~~l~~~~~~~~-i~~~~gs~t~~~ea   82 (361)
T d2c0ra1           5 YNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHN-EAQARLLALLGNPTGYK-VLFIQGGASTQFAM   82 (361)
T ss_dssp             EECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHH-HHHHHHHHHTTCCSSEE-EEEESSHHHHHHHH
T ss_pred             cccCCCCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHH-HHHHHHHHHhCCCCCCE-EEEECCCchHHHHH
Confidence            4678899999999999999887663221211100 013455556555 78899999999976532 22333444467777


Q ss_pred             HHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCC
Q 013217          102 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP  181 (447)
Q Consensus       102 ~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~  181 (447)
                      +...+..+|+++++....+.+.   .+.   ......|.......  .+ ....++++++++.+.. . +.+.++. ..+
T Consensus        83 ~~~~l~~~~~~~l~~~~g~~~~---~~~---~~~~~~g~~~~~~~--~~-~~~~~~~~~~~~~~~~-~-~~~~v~~-~tg  150 (361)
T d2c0ra1          83 IPMNFLKEGQTANYVMTGSWAS---KAL---KEAKLIGDTHVAAS--SE-ASNYMTLPKLQEIQLQ-D-NAAYLHL-TSN  150 (361)
T ss_dssp             HHHHHCCTTCEEEEEECSHHHH---HHH---HHHHHHSCEEEEEE--CG-GGTTCSCCCGGGCCCC-T-TEEEEEE-ESE
T ss_pred             HHhccccCCCceEEEeechhhh---hhh---hhhhhcCceeeeec--cc-cccccchhhhhhhccc-C-cceEEEE-ecc
Confidence            7788899999998776322211   110   11223343333333  32 3456777777766554 2 3333331 112


Q ss_pred             CCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCceEEeecCC-c-------chhh
Q 013217          182 RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDP-V-------LGVE  253 (447)
Q Consensus       182 ~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG~i~~~~~~-~-------~~~~  253 (447)
                      ...++++|.++|+++|+++++|++++.|..+.+.     ...|+.++|++|.++.|.++.+++.... .       ....
T Consensus       151 ~~~~~~~i~~~~~~~~al~~vDavss~g~~~id~-----~~~di~~~s~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (361)
T d2c0ra1         151 ETIEGAQFKAFPDTGSVPLIGDMSSDILSRPFDL-----NQFGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLR  225 (361)
T ss_dssp             ETTTTEECSSCCCCTTSCEEEECTTTTTSSCCCG-----GGCSEEEEETTTTTCCSSCEEEEEEGGGSSSCCTTSCGGGC
T ss_pred             cceecceEEEeeccCCceEEEEeecccccccccc-----ccceeEEEecccccccccCcEEEEEhHHhhhCccccccccc
Confidence            2557778889999999999999999888664433     3467778888998876666444444321 0       0011


Q ss_pred             HHHHhhhccCCCCCCCCcHHHHHHHHHHHHH-hcChhHHHHHHHHHHHHHHHHHHHHHCC-cEe-eeC-CCCCee-EEec
Q 013217          254 LESAINNAVFPGLQGGPHNHTIGGLAVCLKH-AQSPEFKVYQNKVVSNCRALASRLVELG-YKL-VSG-GSDNHL-VLVD  328 (447)
Q Consensus       254 ~~~~i~~~~~~~~~g~p~~~~~aal~~al~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~-~~~-~~~~~~-~~v~  328 (447)
                      +......   .....++......++..+... ....+.....++....+..+.......+ ... ... ...+.. ..+.
T Consensus       226 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~~~~~  302 (361)
T d2c0ra1         226 YDTYVKN---NSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFR  302 (361)
T ss_dssp             HHHHHHT---TTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEE
T ss_pred             ccccccc---ccccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCChhhccceEEEEE
Confidence            1111111   111223333333333222222 2223334455555566666666555532 222 211 111222 3334


Q ss_pred             CCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          329 LRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       329 ~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      +. .+.+.+++.+.|+++||.+..+    ...   -+++|||+..+++    +||+++|+++|++..+
T Consensus       303 ~~-~~~~~~~~~~~L~~~GI~~~~G----~~~---~g~~RIs~~~~~~----~edv~~Lv~~l~~~~~  358 (361)
T d2c0ra1         303 LA-SEELEKEFVKASEQEGFVGLKG----HRS---VGGLRASIYNAVP----YESCEALVQFMEHFKR  358 (361)
T ss_dssp             CS-CHHHHHHHHHHHHHTTEESCBC----CTT---TCSEEEECCTTSC----HHHHHHHHHHHHHHHH
T ss_pred             CC-CcccHHHHHHHHHHCCCEEecC----CCc---CCeEEEEecCCCC----HHHHHHHHHHHHHHHH
Confidence            43 3556788999999999988543    211   1359999988887    9999999999988654

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.81  E-value=2.5e-19  Score=175.16  Aligned_cols=336  Identities=15%  Similarity=0.180  Sum_probs=194.9

Q ss_pred             cCeeEecC----CC---CCCHHHHHHHhhhhhcc-CCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC-CCccceeee
Q 013217           21 KSLELIAS----EN---FTSRAVMEAVGSCLTNK-YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQ   91 (447)
Q Consensus        21 ~~i~l~~~----~n---~~~~~v~~a~~~~~~~~-~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~-~~~~~~~v~   91 (447)
                      +.|+|..+    ++   ++.+.|++|......+. ...+|+.      .+...++.+.+.+++.+..+.. .+.....++
T Consensus        30 ~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p------~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~  103 (412)
T d1yaaa_          30 TKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLG------ITGLPSLTSNAAKIIFGTQSDALQEDRVISVQ  103 (412)
T ss_dssp             SCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCC------TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEE
T ss_pred             CcEEeecCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCC------CCCCHHHHHHHHHHHhcccCccccccceeEEe
Confidence            35888754    33   45689998865544321 1223332      2333455555555665554432 121212222


Q ss_pred             cCCcHHHH--HHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh-
Q 013217           92 PLSGSPAN--FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-  168 (447)
Q Consensus        92 ~~sGs~a~--~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~-  168 (447)
                      .++|..+.  ...+..++.|||+|++++|.++.+..        .+...|.....+++.-+ +++.+|.+.+++.+... 
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~--------~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  174 (412)
T d1yaaa_         104 SLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMA--------IFENQGLKTATYPYWAN-ETKSLDLNGFLNAIQKAP  174 (412)
T ss_dssp             EEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHH--------HHHTTTCCEEEEECEET-TTTEECHHHHHHHHHHSC
T ss_pred             cccchhHHHHHHHHHhccCCCCEEecccccCchhHH--------HHHHcCCceeccccccc-ccccccchhhhcccccCC
Confidence            22222332  22344567899999999998776532        33455554444454332 46688999988877652 


Q ss_pred             -CCcEEEEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCC---------C--cccEEEeCCC
Q 013217          169 -RPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---------K--YCDVVTTTTH  231 (447)
Q Consensus       169 -~~klii~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~---------~--~~Di~~~s~~  231 (447)
                       ++++++++.++||+  ..   .+++|.++|+++++++++|+++ .++.+.+....+.         .  ..-+++.|++
T Consensus       175 ~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y-~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~S  253 (412)
T d1yaaa_         175 EGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAY-QGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFA  253 (412)
T ss_dssp             TTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESC-TTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECT
T ss_pred             CceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeeccee-eecccCCcccchhhhhhhhhccccCCCeEEEEecC
Confidence             34577888888886  44   3689999999999999999995 6666544221111         0  1237888999


Q ss_pred             ccc--CCCCCceEEeecCCcc-hhhHHHHhh----hccCCCCCCCCcHHHHHHHHHHHHH-----hcChhHHHHHHHHHH
Q 013217          232 KSL--RGPRGGMIFFKKDPVL-GVELESAIN----NAVFPGLQGGPHNHTIGGLAVCLKH-----AQSPEFKVYQNKVVS  299 (447)
Q Consensus       232 K~l--~Gp~gG~i~~~~~~~~-~~~~~~~i~----~~~~~~~~g~p~~~~~aal~~al~~-----~~~~~~~~~~~~~~~  299 (447)
                      |.+  .|+|.|+++++.+... .....+.+.    ........+.+...+. ..+..+..     .....++.+.+++.+
T Consensus       254 K~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~  332 (412)
T d1yaaa_         254 KNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAK-IVAKLLETPELTEQWHKDMVTMSSRITK  332 (412)
T ss_dssp             TTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHH-HHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccCcCceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence            975  6899999999875210 001111111    1111112223332222 22222221     111234666778888


Q ss_pred             HHHHHHHHHHHCCc----EeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccc
Q 013217          300 NCRALASRLVELGY----KLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMT  375 (447)
Q Consensus       300 ~~~~l~~~L~~~g~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~  375 (447)
                      +++.+.+.|++.|.    ..+.+ ...++.|+.     ++.+++.++++++||.+    .|         +.||++..++
T Consensus       333 ~r~~l~~~L~~~g~~~~~~~~~~-~gG~F~~~~-----ls~e~~~~L~~e~~V~~----~~---------g~Ris~~g~~  393 (412)
T d1yaaa_         333 MRHALRDHLVKLGTPGNWDHIVN-QCGMFSFTG-----LTPQMVKRLEETHAVYL----VA---------SGRASIAGLN  393 (412)
T ss_dssp             HHHHHHHHHHHHTCSSCCTHHHH-CCSSEEECC-----CCHHHHHHHHHHHCEEC----CT---------TSEEEGGGCC
T ss_pred             HHHHHHHHHHHhCCCCCCceeCC-CceEEEecC-----cCHHHHHHHHHhCCEEE----CC---------CCEEEeccCC
Confidence            88899999988653    22222 234455543     35677788889999987    22         3588765444


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHH
Q 013217          376 TRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       376 ~~g~~~~di~~l~~~i~~~l~~  397 (447)
                           ++.+++++++|+++++.
T Consensus       394 -----~~~i~~l~~ai~~v~k~  410 (412)
T d1yaaa_         394 -----QGNVEYVAKAIDEVVRF  410 (412)
T ss_dssp             -----TTTHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHHHh
Confidence                 57899999999998874

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=3.8e-19  Score=173.07  Aligned_cols=328  Identities=15%  Similarity=0.139  Sum_probs=193.7

Q ss_pred             hcCeeEecC----CC---CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceee
Q 013217           20 FKSLELIAS----EN---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNV   90 (447)
Q Consensus        20 ~~~i~l~~~----~n---~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v   90 (447)
                      .+.|+|..+    ++   ++++.|++|+...+.+....+|+..      +...++.+.+.+++.+..+..  .+.+ ..+
T Consensus        26 ~~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p~------~G~~~lR~aia~~~~~~~~~~~~~~~~-~~~   98 (396)
T d2q7wa1          26 PGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGI------DGIPEFGRCTQELLFGKGSALINDKRA-RTA   98 (396)
T ss_dssp             --CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCT------TCCHHHHHHHHHHHHCTTCHHHHTTCE-EEE
T ss_pred             CCcEEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCC------cCCHHHHHHHHHHHHhhcCCcccccce-eee
Confidence            346888765    22   4578999998877665433344433      223455555556666655543  2222 222


Q ss_pred             ecCCcHHH--HHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhh-
Q 013217           91 QPLSGSPA--NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL-  167 (447)
Q Consensus        91 ~~~sGs~a--~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~-  167 (447)
                      +.++|+.+  +...+...+.+||.|++++|.++++..        .+...|.....+++..+ +++..+.+.+.+.... 
T Consensus        99 ~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~--------~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  169 (396)
T d2q7wa1          99 QTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKS--------VFNSAGLEVREYAYYDA-ENHTLDFDALINSLNEA  169 (396)
T ss_dssp             EESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHH--------HHHHTTCEEEEEECEET-TTTEECHHHHHHHHTTC
T ss_pred             ccchHHHHHHHHHHHHhhcccceEEEEecCCCccchH--------HHHHcCCeeEecccccc-cccccccchHHHHHHHh
Confidence            23333333  333445557999999999998877642        33455653333443332 4556788877766543 


Q ss_pred             -hCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCC-CCC------cccEEEeCCCccc
Q 013217          168 -FRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVAD-PFK------YCDVVTTTTHKSL  234 (447)
Q Consensus       168 -~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~-~~~------~~Di~~~s~~K~l  234 (447)
                       .++++++++.++||+  ..+   +++|.++|+++++++++|+++ .++.+.+.... .+.      ...+++.|++|++
T Consensus       170 ~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y-~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~  248 (396)
T d2q7wa1         170 QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAY-QGFARGLEEDAEGLRAFAAMHKELIVASSYSKNF  248 (396)
T ss_dssp             CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESC-TTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTT
T ss_pred             ccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccc-cccccCCccCchHhhhhhhhcccccccccccccc
Confidence             256777888888886  443   578999999999999999995 66655432111 100      1236778888875


Q ss_pred             --CCCCCceEEeecCCcchhhHHHHhhh-------ccCCCCCCCCcHHHHHHHHHHHHH-----hcChhHHHHHHHHHHH
Q 013217          235 --RGPRGGMIFFKKDPVLGVELESAINN-------AVFPGLQGGPHNHTIGGLAVCLKH-----AQSPEFKVYQNKVVSN  300 (447)
Q Consensus       235 --~Gp~gG~i~~~~~~~~~~~~~~~i~~-------~~~~~~~g~p~~~~~aal~~al~~-----~~~~~~~~~~~~~~~~  300 (447)
                        .|+|.|++++...      ..+.+..       .......+++...+.++ ...+..     .....++++.+++.++
T Consensus       249 ~~~G~R~G~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (396)
T d2q7wa1         249 GLYNERVGACTLVAA------DSETVDRAFSQMKAAIRANYSNPPAHGASVV-ATILSNDALRAIWEQELTDMRQRIQRM  321 (396)
T ss_dssp             TCGGGCCEEEEEECS------SHHHHHHHHHHHHHHHHTTTSSCCHHHHHHH-HHHHTSHHHHHHHHHHHHHC-CHHHHH
T ss_pred             cccCCCccccccchh------HHHHHHHhhhhhhhhhhccccCCCHHHHHHH-HHHhcCchhHHHHHHHHHHHHHHHHHH
Confidence              6899999999874      2222111       11112223333333222 211110     0112345666777888


Q ss_pred             HHHHHHHHHHCCcE----eeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCcccc
Q 013217          301 CRALASRLVELGYK----LVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTT  376 (447)
Q Consensus       301 ~~~l~~~L~~~g~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~  376 (447)
                      ++.+.+.|++.|..    .+.+ ...++.|+.+     +.+++.++++++||.+    +|+         -||++..++ 
T Consensus       322 r~~l~~~L~~~~~~~~~~~~~~-~~G~F~~~~l-----~~e~~~~L~~e~gV~~----~~g---------~Ri~~a~l~-  381 (396)
T d2q7wa1         322 RQLFVNTLQEKGANRDFSFIIK-QNGMFSFSGL-----TKEQVLRLREEFGVYA----VAS---------GRVNVAGMT-  381 (396)
T ss_dssp             HHHHHHHHHHTTCCSCCTHHHH-CCSSEEECCC-----CHHHHHHHHHHHCEEC----CTT---------CEEEGGGCC-
T ss_pred             HHHHHHHHHHhCCCCCcceecC-CCeEEEeeCC-----CHHHHHHHHHhCCEEE----CCC---------CEEEecCCC-
Confidence            88999999887643    2222 2345556533     5677788888999987    332         188765444 


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q 013217          377 RGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       377 ~g~~~~di~~l~~~i~~~l  395 (447)
                          +++|++++++|++++
T Consensus       382 ----~~~i~~~~~ai~~v~  396 (396)
T d2q7wa1         382 ----PDNMAPLCEAIVAVL  396 (396)
T ss_dssp             ----TTTHHHHHHHHHHHC
T ss_pred             ----HHHHHHHHHHHHHhC
Confidence                688999999998764

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=3.4e-19  Score=170.63  Aligned_cols=340  Identities=10%  Similarity=-0.058  Sum_probs=194.4

Q ss_pred             eeEecCCCCCCHHHHHHHhhhhhccCCCCCCCC-c-ccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHH
Q 013217           23 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGK-R-YYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  100 (447)
Q Consensus        23 i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~-~-~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~  100 (447)
                      .|..|++..+|++|+++|.+.+.+.+ ....+. . .+.+.++.+.++ .+++.+++++|++.++. +.+..+||+.++.
T Consensus         3 ~nF~pGP~~~p~~Vl~a~~~~~~~~~-~~~~~~~~~sHRs~ef~~l~~-~~r~~l~~l~~~~~~~~-v~~~~gs~t~~~~   79 (360)
T d1bjna_           3 FNFSSGPAMLPAEVLKQAQQELRDWN-GLGTSVMEVSHRGKEFIQVAE-EAEKDFRDLLNVPSNYK-VLFCHGGGRGQFA   79 (360)
T ss_dssp             EECCSSSCCCCHHHHHHHHHTSSSGG-GSSSCGGGSCTTSHHHHHHHH-HHHHHHHHHHTCCTTEE-EEEESSHHHHHHH
T ss_pred             EEeCCCCcCCCHHHHHHHHHHHhhhc-ccCccccccCcCCHHHHHHHH-HHHHHHHHHhCCCCCCE-EEEECCchHHHHh
Confidence            46788999999999999999887533 221110 0 123455555555 68899999999976532 2222233346677


Q ss_pred             HHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc--CC
Q 013217          101 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG--AS  178 (447)
Q Consensus       101 ~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~--~~  178 (447)
                      ++...+..++|.+++....+.+.   ++.   ......+.  ..+....+ .+...+.+++++.+.. +++++.+.  ++
T Consensus        80 a~~~~~~~~~~~v~~~~~~~~~~---~~~---~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~v~v~~~~~  149 (360)
T d1bjna_          80 AVPLNILGDKTTADYVDAGYWAA---SAI---KEAKKYCT--PNVFDAKV-TVDGLRAVKPMREWQL-SDNAAYMHYCPN  149 (360)
T ss_dssp             HHHHHHCTTCCEEEEEESSHHHH---HHH---HHHTTTSE--EEEEECEE-EETTEEEECCGGGCCC-CSSCSCEEECSE
T ss_pred             hhhhcccccccccceecccchhh---hhH---HHHhhcCc--cceeeccc-cCCCcchhhhhhhhcc-CCceeEEEeccc
Confidence            77777788999998876332221   100   01112222  22222222 2233455555555544 66665554  22


Q ss_pred             CCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCc------c-
Q 013217          179 AYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPV------L-  250 (447)
Q Consensus       179 ~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~------~-  250 (447)
                      ..+...+++.+  .++.+++.+++|++++.+.+..+     ...+|+.++|+||++++|.| |+++..+...      . 
T Consensus       150 ~t~~~~~~~~i--~~~~~~~~v~vDa~~~~~~~~vd-----~~~~dv~~~ss~k~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (360)
T d1bjna_         150 ETIDGIAIDET--PDFGADVVVAADFSSTILSRPID-----VSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPS  222 (360)
T ss_dssp             ETTTTEECCCC--CCCCTTCCEEEECTTTTTSSCCC-----GGGCSEEEEETTTTTSSTTCEEEEEEGGGCSCCCTTSCG
T ss_pred             ccccCccccce--ecccccceeeeeeeccccceeee-----eccceeEEEEcccccccCCCceeEeeehhhhhccccCCc
Confidence            23334444444  35667999999998765543222     22589999999999988887 5555544311      0 


Q ss_pred             hhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCC--CCee-EEe
Q 013217          251 GVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS--DNHL-VLV  327 (447)
Q Consensus       251 ~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~--~~~~-~~v  327 (447)
                      ...+......  ......++......+...++......+.....++..+.+..+.+.+...+........  .++. +.+
T Consensus       223 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~f  300 (360)
T d1bjna_         223 ILDYSILNDN--GSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMNVPF  300 (360)
T ss_dssp             GGCHHHHHHT--TTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSSEEEE
T ss_pred             chhhHHHHhh--hhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccccccccCCcccccceEEEE
Confidence            0011111111  1112233444444444444444444444556666666677666666666554443211  1222 223


Q ss_pred             cCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          328 DLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       328 ~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      .++ .+.+.+++.+.|+++||.+..+    +..   -+++|+|+..++|    +||+++++++|++..+
T Consensus       301 ~~~-~~~~~~~~~~~l~~~Gi~~~~G----~~~---~g~~Ris~~~~~t----~edV~~li~~l~e~~~  357 (360)
T d1bjna_         301 QLA-DSALDKLFLEESFAAGLHALKG----HRV---VGGMRASIYNAMP----LEGVKALTDFMVEFER  357 (360)
T ss_dssp             EES-SGGGHHHHHHHHHHTTEECCBC----CTT---TCSEEEECCTTSC----HHHHHHHHHHHHHHHH
T ss_pred             EcC-CcccHHHHHHHHHHCCCEeecC----CCc---cCeEEEEecCCCC----HHHHHHHHHHHHHHHH
Confidence            443 3566788999999999987542    211   1359999988887    9999999999998654

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=7e-18  Score=160.48  Aligned_cols=220  Identities=19%  Similarity=0.197  Sum_probs=155.6

Q ss_pred             CCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccc
Q 013217           51 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT  130 (447)
Q Consensus        51 g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~  130 (447)
                      +|...|  .+++....+|    ++++++-|.+.     .+.+.||..|+.+++.+++++||+|++.+..|++......  
T Consensus        41 ~~~Y~R--~~nPt~~~le----~~la~LEgg~~-----a~~~sSGMaAi~~~l~~l~~~gd~vv~~~~~yg~t~~~~~--  107 (384)
T d1cs1a_          41 AHDYSR--RGNPTRDVVQ----RALAELEGGAG-----AVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFD--  107 (384)
T ss_dssp             SCSBTT--TCCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH--
T ss_pred             CCcccC--CCCHHHHHHH----HHHHHHhCCCc-----eEEecChHHHHHHHHhhcccccceecccccccchhhhhhh--
Confidence            444444  4678888998    58889999875     3556999999999999999999999999887776532110  


Q ss_pred             cccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhc
Q 013217          131 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHIS  208 (447)
Q Consensus       131 ~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~  208 (447)
                        ..+...|  .....  ++    ..|.+++++++.+ +|++|++.++.||+  ..|+++|+++|+++|++++||.+.+.
T Consensus       108 --~~~~~~g--~~~~~--~d----~~d~~~~~~~~~~-~t~~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVDNT~at  176 (384)
T d1cs1a_         108 --SLAKRGC--YRVLF--VD----QGDEQALRAALAE-KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLS  176 (384)
T ss_dssp             --HHHTTTS--CEEEE--EC----TTCHHHHHHHHHT-CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTC
T ss_pred             --hhhcccc--ccccc--cc----CCCHHHHHhhccc-cccEEEEeccccccceeccHHHHhhhhhhcCcEEEEeccccC
Confidence              1111122  23333  22    2578999999987 99999999888887  78999999999999999999998644


Q ss_pred             cccccccCCCCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhcc-CCCCCCCCcHHHHHHHHHHHH
Q 013217          209 GLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAV-FPGLQGGPHNHTIGGLAVCLK  283 (447)
Q Consensus       209 g~~~~~~~~~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~-~~~~~g~p~~~~~aal~~al~  283 (447)
                      +     ....|+. ++|+++.|+.|++.|-.   +|.++.+++     ++.+.+.... ..|.  .++...   .+..++
T Consensus       177 P-----~~~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~-----~~~~~~~~~~~~~G~--~~~p~~---a~ll~r  241 (384)
T d1cs1a_         177 P-----ALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDP-----DVVTELAWWANNIGV--TGGAFD---SYLLLR  241 (384)
T ss_dssp             T-----TTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSH-----HHHHHHHHHHHHHTC--BCCHHH---HHHHHH
T ss_pred             c-----ccccccccCCCEEEEccccccccCCCcccccccCCch-----hhhhhhhhhhhhhhh--cccccc---HHHHhh
Confidence            3     2345666 69999999999998754   377777663     4444443211 1111  122221   223455


Q ss_pred             HhcChhHHHHHHHHHHHHHHHHHHHHHC
Q 013217          284 HAQSPEFKVYQNKVVSNCRALASRLVEL  311 (447)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~  311 (447)
                      .+.+  +.-++++..+|+..+++.|++.
T Consensus       242 gL~T--L~lRm~~~~~nA~~lA~~L~~h  267 (384)
T d1cs1a_         242 GLRT--LVPRMELAQRNAQAIVKYLQTQ  267 (384)
T ss_dssp             HHTT--HHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccch--hHHHHHHHHHHHHHHHHhcccC
Confidence            5443  6678999999999999999883

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=2.5e-19  Score=174.37  Aligned_cols=333  Identities=15%  Similarity=0.155  Sum_probs=188.2

Q ss_pred             cCeeEecC----CC---CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeee
Q 013217           21 KSLELIAS----EN---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQ   91 (447)
Q Consensus        21 ~~i~l~~~----~n---~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~   91 (447)
                      +.|+|..+    ++   ++.+.|++|........     .+...|+......++.+.+.+++.+..+..  .+.+ +.++
T Consensus        27 ~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~-----~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i-~~~~  100 (397)
T d3tata_          27 DKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQP-----HGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRV-ATIQ  100 (397)
T ss_dssp             SCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTSC-----CSSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCE-EECC
T ss_pred             CcEEccCCCCcCCCCCCCCcHHHHHHHHHHHhCc-----ccCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCcE-EEec
Confidence            44888765    22   45689999976543321     111223444444566655555555544432  3322 1111


Q ss_pred             cCCcH--HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhh-
Q 013217           92 PLSGS--PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAIL-  167 (447)
Q Consensus        92 ~~sGs--~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~-  167 (447)
                      .++++  .++.+++.++++|||+|++++|.+.++..        .+...|.  ++++++++. +.+..|.+++.+.+.. 
T Consensus       101 ~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~--------~~~~~G~--~~~~v~~~~~~~~~~~~~~~~~~~~~~  170 (397)
T d3tata_         101 TLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVA--------IFAGAGF--EVSTYPWYDEATNGVRFNDLLATLKTL  170 (397)
T ss_dssp             BSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHH--------HHHTTTC--CCEECCCCCTTTSSCCHHHHHHHHTTC
T ss_pred             CchhHHHHHHHHHHhhhcCCCCcceecccCccccHH--------HHHHcCC--EEEEEecchhhccccchHHHHHHhhhc
Confidence            22222  24555666778999999999998877642        3345554  555666654 3467899988877653 


Q ss_pred             -hCCcEEEEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccC-CCCC----C--cccEEEeCCCccc
Q 013217          168 -FRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVV-ADPF----K--YCDVVTTTTHKSL  234 (447)
Q Consensus       168 -~~~klii~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~~~~----~--~~Di~~~s~~K~l  234 (447)
                       .++++++++.++||+  ..   .+++|.++|+++++++++|+++ .++.+.+.. ....    .  .--+++.|++|++
T Consensus       171 ~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y-~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~  249 (397)
T d3tata_         171 PARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAY-QGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIF  249 (397)
T ss_dssp             CSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSC-TTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHH
T ss_pred             ccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhh-hhhccCCcccchhhhhhhhcCCceEEEecCcccc
Confidence             256778888888886  44   3578999999999999999995 555543211 0000    0  1237889999975


Q ss_pred             --CCCCCceEEeecCCcc-hhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHH--hc---ChhHHHHHHHHHHHHHHHHH
Q 013217          235 --RGPRGGMIFFKKDPVL-GVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH--AQ---SPEFKVYQNKVVSNCRALAS  306 (447)
Q Consensus       235 --~Gp~gG~i~~~~~~~~-~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~--~~---~~~~~~~~~~~~~~~~~l~~  306 (447)
                        .|+|.|++++...... .......+.........+.+...+. +++..+..  ..   ....+.+.+++.+.++.+.+
T Consensus       250 ~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~  328 (397)
T d3tata_         250 SLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQ-VVAAVLNDEALKASWLAEVEEMRTRILAMRQELVK  328 (397)
T ss_dssp             TBTTTCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHH-HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCccccccccchhHHHHHHHHHHHHHHHhhcccccccHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              6899999998874210 0011112222222223334443332 22222221  00   01123334444455555555


Q ss_pred             HHHHCC----cEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHH
Q 013217          307 RLVELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEK  382 (447)
Q Consensus       307 ~L~~~g----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~  382 (447)
                      .|.+.+    |.++.+ ...++.|+.     ++.+++.++++++||.+    +|         +.||++..++     ++
T Consensus       329 ~L~~~~~~~~~~~~~~-~~G~F~~~~-----ls~e~~~~L~~e~~V~l----~~---------g~Ri~~a~~~-----~~  384 (397)
T d3tata_         329 VLSTEMPERNFDYLLN-QRGMFSYTG-----LSAAQVDRLREEFGVYL----IA---------SGRMCVAGLN-----TA  384 (397)
T ss_dssp             TTTTTCTTSCTTHHHH-CCSSBCCCC-----CCHHHHHHHTTTTCEEC----CS---------SSCCBTTSCC-----TT
T ss_pred             HHHHhCCCCceEEEcC-CCceEEecC-----cCHHHHHHHHHhCCEEe----CC---------CCEEEeccCC-----HH
Confidence            554432    332222 223444543     35567777778899987    33         3488875544     68


Q ss_pred             HHHHHHHHHHHHH
Q 013217          383 EFVAIADFIHEGV  395 (447)
Q Consensus       383 di~~l~~~i~~~l  395 (447)
                      ++++++++|++++
T Consensus       385 ~i~~~~~ai~~v~  397 (397)
T d3tata_         385 NVQRVAKAFAAVM  397 (397)
T ss_dssp             THHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhC
Confidence            8999999998764

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.78  E-value=3.8e-18  Score=162.32  Aligned_cols=214  Identities=21%  Similarity=0.226  Sum_probs=152.5

Q ss_pred             CchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccc
Q 013217           59 GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGT  138 (447)
Q Consensus        59 ~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~  138 (447)
                      .+++..+.+|    ++++.+-|.+.     .+.+.||..|+. ++.+++++||+|++....|++......    ......
T Consensus        46 ~~nPt~~~le----~~la~LE~~~~-----a~~fsSGMaAis-all~ll~~Gd~vv~~~~~Yg~t~~l~~----~~~~~~  111 (380)
T d1ibja_          46 SGNPTRDALE----SLLAKLDKADR-----AFCFTSGMAALS-AVTHLIKNGEEIVAGDDVYGGSDRLLS----QVVPRS  111 (380)
T ss_dssp             TCCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHH-HHHTTSCTTCEEEEESSCCHHHHHHHH----HTSGGG
T ss_pred             CCChHHHHHH----HHHHHHcCCce-----EEehhhHHHHHH-HHHHhhCCCCEEEEEecccccccchhh----hhhccc
Confidence            4778888898    58899999875     244699988875 677899999999999988887642110    111223


Q ss_pred             cceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccC
Q 013217          139 SIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV  216 (447)
Q Consensus       139 g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~  216 (447)
                      |.  ++..  ++    ..|++++++++++ +||+|++..+.||.  ..|+++|+++|+++|++++||.+.+.+.     .
T Consensus       112 gi--~~~~--~d----~~~~~~~~~ai~~-~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDnT~atP~-----~  177 (380)
T d1ibja_         112 GV--VVKR--VN----TTKLDEVAAAIGP-QTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPV-----L  177 (380)
T ss_dssp             TC--EEEE--EC----TTSHHHHHHHCCS-SEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTT-----T
T ss_pred             cc--cccc--cC----cchHHHHHHHhcc-CccEEEeccccccccccccHHHHHHHHHHcCCeEEeeccccccc-----c
Confidence            33  3333  22    2578999999987 99999999888887  7899999999999999999999864332     2


Q ss_pred             CCCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHH
Q 013217          217 ADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKV  292 (447)
Q Consensus       217 ~~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~  292 (447)
                      ..|+. ++|+++.|+.|+++|..   +|.++++++     ++.+.+...... ..+.+....   .+..++.+.  .+..
T Consensus       178 ~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~-----~~~~~~~~~~~~-~G~~l~p~~---a~ll~rgl~--Tl~l  246 (380)
T d1ibja_         178 SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE-----KLAKEVYFLQNS-EGSGLAPFD---CWLCLRGIK--TMAL  246 (380)
T ss_dssp             CCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSH-----HHHHHHHHHHHH-TTCBCCHHH---HHHHHHHHT--THHH
T ss_pred             ccccccCCCEEEecccceeccccCccccccccchh-----hHHHHHHhhccc-cCCcCCHHH---HHHHHhcch--hhhh
Confidence            44565 69999999999997743   477777763     555555432211 111223222   233444444  3678


Q ss_pred             HHHHHHHHHHHHHHHHHHC
Q 013217          293 YQNKVVSNCRALASRLVEL  311 (447)
Q Consensus       293 ~~~~~~~~~~~l~~~L~~~  311 (447)
                      ++++..+|+..+++.|++.
T Consensus       247 Rm~~~~~nA~~lA~~L~~h  265 (380)
T d1ibja_         247 RIEKQQENARKIAMYLSSH  265 (380)
T ss_dssp             HHHHHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHHHHHhC
Confidence            8999999999999999983

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.78  E-value=5.7e-17  Score=154.66  Aligned_cols=248  Identities=16%  Similarity=0.111  Sum_probs=162.7

Q ss_pred             EecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHH
Q 013217           25 LIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYT  104 (447)
Q Consensus        25 l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~  104 (447)
                      +..+.+|.-+...+.. .....+ ..||...|  .|++..+.+|    ++++++-|.+.     .+...||..|+.+++.
T Consensus        34 I~~sst~~~~~~~~~~-~~~~~~-~~~~~Y~R--~~nPt~~~LE----~~la~LEgg~~-----a~~~sSGMaAi~~~l~  100 (398)
T d1qgna_          34 VVNTSAYFFNKTSELI-DFKEKR-RASFEYGR--YGNPTTVVLE----EKISALEGAES-----TLLMASGMCASTVMLL  100 (398)
T ss_dssp             BCCCSBBCBSSHHHHH-HHHTTS-SCCCCBGG--GCCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHH
T ss_pred             eeCCCcEEeCCHHHHH-HHhcCC-cCCceecC--CCChHHHHHH----HHHHHHhCCce-----EEEecCcchHHHHHHh
Confidence            3445555544333332 222222 24555554  3678888998    58889999875     3456999999999999


Q ss_pred             HhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--
Q 013217          105 AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--  182 (447)
Q Consensus       105 al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--  182 (447)
                      +++++||+|++....|++.....    .......|.  +...++      ..|.++.++.+...+|++|++..+.||+  
T Consensus       101 ~l~~~Gd~iv~~~~~Yg~t~~l~----~~~~~~~gi--~~~~~~------~~~~~~~~~~~~~~~t~~v~~EspsNP~l~  168 (398)
T d1qgna_         101 ALVPAGGHIVTTTDCYRKTRIFI----ETILPKMGI--TATVID------PADVGALELALNQKKVNLFFTESPTNPFLR  168 (398)
T ss_dssp             HHSCSSCEEEEETTSCHHHHHHH----HHTGGGGTC--EEEEEC------SSCHHHHHHHHHHSCEEEEEEESSCTTTCC
T ss_pred             hcccccccccccccccchhhhhh----ccccccccc--cccccc------ccchhhhhhhhccccceEEEccCccccccc
Confidence            99999999999998887753211    011122232  333322      1345555554444489999999889987  


Q ss_pred             CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHh
Q 013217          183 DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAI  258 (447)
Q Consensus       183 ~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i  258 (447)
                      ..|+++|+++|+++|++++||.+.+..     ....|+. ++|+++.|+.|+++|..   ||.+..++      ++...+
T Consensus       169 v~Di~~ia~ia~~~g~~~vVDnT~atP-----~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~------~~~~~~  237 (398)
T d1qgna_         169 CVDIELVSKLCHEKGALVCIDGTFATP-----LNQKALALGADLVLHSATKFLGGHNDVLAGCISGPL------KLVSEI  237 (398)
T ss_dssp             CCCHHHHHHHHHHTTCEEEEECTTTCT-----TTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECH------HHHHHH
T ss_pred             cchHHHHHHHHhhcCCEEEecceeecc-----ccCCchhhCCCEEEEechhhcCcccceeehhhcchh------hhhhhh
Confidence            789999999999999999999985433     3345666 69999999999998764   36666655      555544


Q ss_pred             hhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcE
Q 013217          259 NNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYK  314 (447)
Q Consensus       259 ~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~  314 (447)
                      ...... ..+.++...   .+..++.+.  .+.-++++..+|+..+++.|++ +.++
T Consensus       238 ~~~~~~-~G~~l~p~~---a~ll~rgl~--TL~lRm~~~~~nA~~lA~~L~~hp~V~  288 (398)
T d1qgna_         238 RNLHHI-LGGALNPNA---AYLIIRGMK--TLHLRVQQQNSTALRMAEILEAHPKVR  288 (398)
T ss_dssp             HHHHHH-HCCCCCHHH---HHHHHHHGG--GHHHHHHHHHHHHHHHHHHHHTCTTEE
T ss_pred             hhhccc-CCCcCCHHH---HHHHHhcch--HHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence            332110 111222222   223445443  3677899999999999999988 3443

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=3.8e-17  Score=156.06  Aligned_cols=218  Identities=15%  Similarity=0.082  Sum_probs=152.7

Q ss_pred             CCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccc
Q 013217           52 LPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTP  131 (447)
Q Consensus        52 ~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~  131 (447)
                      |-..|  .+++....+|    ++++++-|.+.     .+...||..|+.+++.+++++||+|++....|++.....    
T Consensus        50 ~~Y~R--~~nPt~~~le----~~la~LEg~~~-----a~~~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~----  114 (391)
T d1cl1a_          50 LFYGR--RGTLTHFSLQ----QAMCELEGGAG-----CVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFC----  114 (391)
T ss_dssp             CCCTT--TCCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHH----
T ss_pred             eEeEC--CCChhHHHHH----HHHHHHhCCcc-----EEEeccccceeeehhhcccCCCCeEEEecccccchhhhh----
Confidence            44444  4678888898    58889999875     345689999999999999999999999998888763211    


Q ss_pred             ccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHh--CCEEEEehhhh
Q 013217          132 KRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAV--GALLMMDMAHI  207 (447)
Q Consensus       132 ~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~--g~~livD~a~~  207 (447)
                      .+.+...|  +++..+  |    ..|.+++++++++ ++++|++..+.||.  ..|+++++++|+++  |++++||.+.+
T Consensus       115 ~~~l~~~G--i~~~~~--d----~~d~~~~~~~i~~-~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~vVDnT~a  185 (391)
T d1cl1a_         115 SKILSKLG--VTTSWF--D----PLIGADIVKHLQP-NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWA  185 (391)
T ss_dssp             HHTGGGGT--CEEEEE--C----TTCGGGGGGTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTT
T ss_pred             hhcccccc--cccccc--c----Ccccccccccccc-ccceeeecccCcccccccccHHHHHHHHhccCCcEEEEecccc
Confidence            01112223  344442  2    1366888888877 89999999888886  78999999999875  99999999854


Q ss_pred             ccccccccCCCCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhcc-CCCCCCCCcHHHHHHHHHHH
Q 013217          208 SGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAV-FPGLQGGPHNHTIGGLAVCL  282 (447)
Q Consensus       208 ~g~~~~~~~~~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~-~~~~~g~p~~~~~aal~~al  282 (447)
                      .+     ....|++ ++|+++.|+.|+++|-.   ||.++.++      ++.+.+.... ..+  +.+....   .+..+
T Consensus       186 tP-----~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~------~~~~~~~~~~~~~G--~~~~p~~---a~ll~  249 (391)
T d1cl1a_         186 AG-----VLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNA------RCWEQLRENAYLMG--QMVDADT---AYITS  249 (391)
T ss_dssp             TT-----TSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECT------TTHHHHHHHHHHTT--CCCCHHH---HHHHH
T ss_pred             ch-----hhhcccccccceEEeecchhccccccccccceeccc------cccccchhhhhccc--ccCCchh---hhhhh
Confidence            33     2345665 69999999999998754   47777766      3333333211 111  1222221   22334


Q ss_pred             HHhcChhHHHHHHHHHHHHHHHHHHHHHC
Q 013217          283 KHAQSPEFKVYQNKVVSNCRALASRLVEL  311 (447)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  311 (447)
                      +.+.+  +.-++++..+|+..+++.|++.
T Consensus       250 rgl~T--L~lR~~~~~~nA~~vA~~L~~h  276 (391)
T d1cl1a_         250 RGLRT--LGVRLRQHHESSLKVAEWLAEH  276 (391)
T ss_dssp             HHHTT--HHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccchh--HHHHHHHHHHHHHHHHHHHHhc
Confidence            44443  6778999999999999999883

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.77  E-value=3.1e-18  Score=166.46  Aligned_cols=344  Identities=15%  Similarity=0.161  Sum_probs=197.1

Q ss_pred             HHHHHHHHHHH-HhhcCeeEecCC-------CCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHH
Q 013217            7 EVCEIITKEKE-RQFKSLELIASE-------NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA   78 (447)
Q Consensus         7 ~~~~~~~~e~~-~~~~~i~l~~~~-------n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~   78 (447)
                      .|..+..+-.+ ...+.|+|..+.       .+++|.|++|+...+.+....+|...      +...++.+.+.+++.+.
T Consensus        12 ~i~~l~~~~~~d~~~~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p~------~G~~~lr~aia~~~~~~   85 (394)
T d2ay1a_          12 KILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGL------SGEPEFQKAMGELILGD   85 (394)
T ss_dssp             SHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCS------SCCHHHHHHHHHHHHGG
T ss_pred             hHHHHHHHHhCCCCCCCEEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCC------CCCHHHHHHHHHHHhcc
Confidence            35555543221 113568887662       25578999999887765433344332      22345555555666655


Q ss_pred             cCCCCCccceeeecCCcHHH--HHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCC
Q 013217           79 FNLDENKWGVNVQPLSGSPA--NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGL  155 (447)
Q Consensus        79 ~g~~~~~~~~~v~~~sGs~a--~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~  155 (447)
                      .+.....  ..+++++|+++  +.+.+..+.+|||+|++++|.++.+..        .+...|.  +++.++... +.+.
T Consensus        86 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~--------~~~~~g~--~~v~~~~~~~~~~~  153 (394)
T d2ay1a_          86 GLKSETT--ATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVS--------IMNFMGL--PVQTYRYFDAETRG  153 (394)
T ss_dssp             GCCGGGE--EEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHH--------HHHHHTC--CEEEEECEETTTTE
T ss_pred             ccccccc--cceeccCchHHHHHHHHHhhhcCCceEEEEecccccchHH--------HHHHcCC--EEEEecccchhccc
Confidence            5543211  23444555533  445556678999999999988776532        3345554  444444432 4556


Q ss_pred             CCHHHHHHHhhhh--CCcEEEEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCC------Cc
Q 013217          156 VDYDMLEKTAILF--RPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF------KY  222 (447)
Q Consensus       156 id~~~l~~~~~~~--~~klii~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~------~~  222 (447)
                      .+.+++++.....  ++++++++.++||+  ..   .+++|.++|+++++++++|+++ .++.+.+....+.      ..
T Consensus       154 ~~~~~~~~~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y-~~l~~~~~~~~~~~~~~~~~~  232 (394)
T d2ay1a_         154 VDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAY-QGFGDGLEEDAAGTRLIASRI  232 (394)
T ss_dssp             ECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECC-TTSSSCHHHHHHHHHHHHHHC
T ss_pred             ccchhHHHHHhhcccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccc-hhhcccccccchhhhhhhhhc
Confidence            7777777665432  45666667788886  44   3689999999999999999995 6665543211111      01


Q ss_pred             -ccEEEeCCCccc--CCCCCceEEeecCCcc-hhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHH-----HhcChhHHHH
Q 013217          223 -CDVVTTTTHKSL--RGPRGGMIFFKKDPVL-GVELESAINNAVFPGLQGGPHNHTIGGLAVCLK-----HAQSPEFKVY  293 (447)
Q Consensus       223 -~Di~~~s~~K~l--~Gp~gG~i~~~~~~~~-~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~-----~~~~~~~~~~  293 (447)
                       .-+++.|++|++  .|+|.|++.+...... .......+...........+...+ +.....+.     ......++.+
T Consensus       233 ~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~  311 (394)
T d2ay1a_         233 PEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGA-KIVSTVLTTPELRADWMAELEAV  311 (394)
T ss_dssp             SSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHH-HHHHHHHHSHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccCCcccccchhhchhHHHHHHHhhhhhHhhhcccccchhHHHH-HHHHHhcCCHHHHHHHHHHHHHH
Confidence             135667778875  5889999998874110 000011111111111122222222 11111111     1111234556


Q ss_pred             HHHHHHHHHHHHHHHHHCC----cEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEE
Q 013217          294 QNKVVSNCRALASRLVELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRI  369 (447)
Q Consensus       294 ~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRi  369 (447)
                      .+++.++++.|.+.|++.|    |....+ ...++.|+.+     +.+++.++++++||.+    +|         +.||
T Consensus       312 ~~~~~~~r~~l~~~L~~~~~~~~~~~~~~-~~G~F~~~~l-----s~~~~~~L~~~~~V~~----~~---------g~Ri  372 (394)
T d2ay1a_         312 RSGMLRLREQLAGELRDLSGSDRFGFVAE-HRGMFSRLGA-----TPEQVKRIKEEFGIYM----VG---------DSRI  372 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSTTTHHHH-CCSSEEECCC-----CHHHHHHHHHHHCEEC----CT---------TCEE
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCceeeECC-CceeEEecCc-----CHHHHHHHHHhCCEEe----cC---------CCEE
Confidence            7777788888888887743    332222 2345566543     4567777778999987    23         3588


Q ss_pred             ecCccccCCCCHHHHHHHHHHHHHH
Q 013217          370 GSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       370 g~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                      ++..++     +++|++++++|.++
T Consensus       373 ~~a~l~-----~~~i~~l~~ai~~v  392 (394)
T d2ay1a_         373 NIAGLN-----DNTIPILARAIIEV  392 (394)
T ss_dssp             EGGGCC-----TTTHHHHHHHHHHH
T ss_pred             EecCCC-----HHHHHHHHHHHHHh
Confidence            875444     68999999999875

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.76  E-value=3.9e-17  Score=152.84  Aligned_cols=319  Identities=11%  Similarity=0.053  Sum_probs=180.4

Q ss_pred             cCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHH
Q 013217           27 ASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYT  104 (447)
Q Consensus        27 ~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~  104 (447)
                      +|+|.  ++|+|++||....... ..||      +..+    ..+.+++++++++|++++++   +.+++||+||..++.
T Consensus         5 ~nd~~~g~~P~v~eAl~~~~~~~-~~~y------~~~~----~~~~lr~~ia~~~g~~~~~v---~~tsggtean~~a~~   70 (340)
T d1svva_           5 VNDYSVGMHPKILDLMARDNMTQ-HAGY------GQDS----HCAKAARLIGELLERPDADV---HFISGGTQTNLIACS   70 (340)
T ss_dssp             SCSCSSCCCHHHHHHHHHHTTCC-CCST------TCSH----HHHHHHHHHHHHHTCTTSEE---EEESCHHHHHHHHHH
T ss_pred             ccCCCCCCCHHHHHHHHHHhhcC-CCCC------CCCH----HHHHHHHHHHHHhCCCcceE---EEcCCHHHHHHHHHH
Confidence            45664  4799999998754332 2232      2222    33356689999999987643   223556799999999


Q ss_pred             HhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh----C--CcEEEEcCC
Q 013217          105 AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF----R--PKLIIAGAS  178 (447)
Q Consensus       105 al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~----~--~klii~~~~  178 (447)
                      ++.+++++++...+.+.++.....        ..+........  .......+.+....+....    .  +.++++..+
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (340)
T d1svva_          71 LALRPWEAVIATQLGHISTHETGA--------IEATGHKVVTA--PCPDGKLRVADIESALHENRSEHMVIPKLVYISNT  140 (340)
T ss_dssp             HHCCTTEEEEEETTSHHHHSSTTH--------HHHTTCCEEEE--CCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS
T ss_pred             HHhhhccccccccccceeeeeccc--------ccccceeeeec--ccccccccchhHHHHhhhhhcccCCcceeeeeccc
Confidence            999999999988877655533221        11111111111  1122334444444433221    1  223444444


Q ss_pred             CCCC-CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC----cccEEEeCCCcccCCCCCceEEeecCCcc
Q 013217          179 AYPR-DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSLRGPRGGMIFFKKDPVL  250 (447)
Q Consensus       179 ~~~~-~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~----~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~  250 (447)
                      ++++ ..   ++..+.++|+++|+++++|+++..+....+.......    ..++...+.+|...++.+++.....    
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  216 (340)
T d1svva_         141 TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILND----  216 (340)
T ss_dssp             CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSG----
T ss_pred             ccccccccHHHhhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCccccccccccccccch----
Confidence            4444 33   3567788999999999999998766655443322211    2356677777765544444444333    


Q ss_pred             hhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCC
Q 013217          251 GVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLR  330 (447)
Q Consensus       251 ~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~  330 (447)
                        .............. ++.... .++.++++.......+..+.++..+++..+.+.|++.|++++.+. ..+++++++ 
T Consensus       217 --~~~~~~~~~~~~~~-~~~~~~-~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~p~-~~~~v~~~~-  290 (340)
T d1svva_         217 --ALKPNARHLIKQRG-ALMAKG-WLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEACGIRLAWPS-ASNQLFPIL-  290 (340)
T ss_dssp             --GGCTTHHHHHHHTT-CCCTTT-HHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCC-SSSEECBEE-
T ss_pred             --hhhhhhhhhccccc-Cccchh-hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhcCCCeeecCC-CceEEEEeC-
Confidence              11111111100111 111111 122223333344445677788888999999999999999887653 344455444 


Q ss_pred             CCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217          331 PMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  393 (447)
Q Consensus       331 ~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~  393 (447)
                          +.. ....|.+.++.......+     ...+.+|++++..||    ++||++++++|++
T Consensus       291 ----~~~-~~~~l~~~~~~~~~~~~~-----~~~~~vR~s~~~~~t----~edid~~l~~l~~  339 (340)
T d1svva_         291 ----ENT-MIAELNNDFDMYTVEPLK-----DGTCIMRLCTSWATE----EKECHRFVEVLKR  339 (340)
T ss_dssp             ----EHH-HHHHHTTTEECEEEEEET-----TTEEEEEEECCTTCC----HHHHHHHHHHHHH
T ss_pred             ----CHH-HHHHHHHhhhhhcccccC-----CCCcEEEEECCCCCC----HHHHHHHHHHHhc
Confidence                233 333343433322111111     235689999998888    9999999999976

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=99.76  E-value=2.3e-16  Score=150.71  Aligned_cols=222  Identities=19%  Similarity=0.179  Sum_probs=155.0

Q ss_pred             CCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcc
Q 013217           50 EGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFM  129 (447)
Q Consensus        50 ~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~  129 (447)
                      .||...|  .+++....+|    ++++++-|.+.     .+...||..|+.+++.+++++||+|++.+..|++....-  
T Consensus        49 ~~~~YsR--~~nPT~~~le----~~la~LEg~~~-----a~~~sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~--  115 (394)
T d1e5ea_          49 SGYIYTR--LGNPTVSNLE----GKIAFLEKTEA-----CVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALF--  115 (394)
T ss_dssp             CSCCBTT--TCCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHH--
T ss_pred             CCceecC--CCCHHHHHHH----HHHHHHhCCcc-----eeeeccchHHHHHHHHhhcccccccccccceeehhhHhH--
Confidence            3555555  3688888998    57888999875     244589999999999999999999999998887753211  


Q ss_pred             ccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHH-hCCEEEEehhh
Q 013217          130 TPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADA-VGALLMMDMAH  206 (447)
Q Consensus       130 ~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~-~g~~livD~a~  206 (447)
                        .......|.  .+..+  |    .-|.+++++++++ ++++|++..+.||.  ..|++++.+++++ +|+++++|.+.
T Consensus       116 --~~~~~~~gi--~~~~~--d----~~d~~~~~~~i~~-~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vvvDnT~  184 (394)
T d1e5ea_         116 --EHALTKFGI--QVDFI--N----TAIPGEVKKHMKP-NTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTF  184 (394)
T ss_dssp             --HTHHHHTTC--EEEEE--C----TTSTTHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTT
T ss_pred             --HHHhhccce--eeecc--C----CCCHHHHHHhhcc-cccEEEEeccCCcceeeehhhhhhhccccccCeEEEecCcc
Confidence              011122232  33332  2    2366889999987 89999999888886  6799999887764 68999999985


Q ss_pred             hccccccccCCCCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccCCCCCCC-CcHHHHHHHHHH
Q 013217          207 ISGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGG-PHNHTIGGLAVC  281 (447)
Q Consensus       207 ~~g~~~~~~~~~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~-p~~~~~aal~~a  281 (447)
                      +..     ....|+. ++|+++.|+.|+++|..   +|.+++++      +....++........|. ++...   .+..
T Consensus       185 atP-----~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~------~~~~~~~~~~~~~~~G~~lsp~~---a~ll  250 (394)
T d1e5ea_         185 CSP-----MITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKA------DLLQQIRMVGIKDITGSVISPHD---AWLI  250 (394)
T ss_dssp             TCT-----TTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECH------HHHHHHHHTCCCCCCCCCCCHHH---HHHH
T ss_pred             cCc-----ccCCchhcCCCEEEechhhhcCCCcccccccccchh------hHHHHHHHHHHHHhhCCCCChHH---HHHH
Confidence            433     2345666 69999999999998754   48788876      45444332222222233 33332   1234


Q ss_pred             HHHhcChhHHHHHHHHHHHHHHHHHHHHHC
Q 013217          282 LKHAQSPEFKVYQNKVVSNCRALASRLVEL  311 (447)
Q Consensus       282 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  311 (447)
                      ++.+.+  +.-++++..+|+..+++.|++.
T Consensus       251 ~rgl~T--L~lRm~r~~~nA~~lA~~L~~h  278 (394)
T d1e5ea_         251 TRGLST--LNIRMKAESENAMKVAEYLKSH  278 (394)
T ss_dssp             HHHHTT--HHHHHHHHHHHHHHHHHHHHTC
T ss_pred             Hhhchh--HHHHHHHHHHHHHHHHHHHhhc
Confidence            454443  6778999999999999999984

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=99.73  E-value=2.4e-16  Score=147.56  Aligned_cols=205  Identities=15%  Similarity=0.171  Sum_probs=142.1

Q ss_pred             HHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC
Q 013217           73 KRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES  152 (447)
Q Consensus        73 ~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  152 (447)
                      ++++++-|.+.     .+...||..|+..++.++++|||+|++....|++....-    .+.+.-.|.  ++..+  |  
T Consensus         5 ~~la~Leg~~~-----a~~~sSGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~----~~~l~~~gi--~~~~~--d--   69 (331)
T d1pffa_           5 GKIAKLEHAEA-----CAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALF----EHQLRKFGV--EVDFI--D--   69 (331)
T ss_dssp             HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHH----HTHHHHTTC--EEEEE--C--
T ss_pred             HHHHHHhCCCe-----EEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHH----HHHHHhcCe--EEEEe--c--
Confidence            57888989875     345689999999999999999999999998887753211    011222343  44442  2  


Q ss_pred             CCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHH-HHhCCEEEEehhhhccccccccCCCCCC-cccEEEe
Q 013217          153 TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIA-DAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTT  228 (447)
Q Consensus       153 ~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia-~~~g~~livD~a~~~g~~~~~~~~~~~~-~~Di~~~  228 (447)
                        .-|++.+++++++ +|++|++..+.||.  ..|++++.+++ +++|+++++|.+.+...     ...|++ ++|+++.
T Consensus        70 --~~d~~~~~~~i~~-~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~-----~~~pl~~GaDiVv~  141 (331)
T d1pffa_          70 --MAVPGNIEKHLKP-NTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPI-----LTNPLDLGVDIVVH  141 (331)
T ss_dssp             --TTSTTHHHHTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHH-----HCCGGGGTCSEEEE
T ss_pred             --ccchhhHhhhccc-ccceeeeecccccccccccchhhhhhhhcccCceEEeeccccccc-----cccccccCCCEEEe
Confidence              2378889999987 89999998877776  77999999885 67899999999854332     234666 5999999


Q ss_pred             CCCcccCCC---CCceEEeecCCcchhhHHHHhhhccCCCCCCC-CcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHH
Q 013217          229 TTHKSLRGP---RGGMIFFKKDPVLGVELESAINNAVFPGLQGG-PHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL  304 (447)
Q Consensus       229 s~~K~l~Gp---~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~-p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l  304 (447)
                      |+.|++.|-   -||.++.++      +..............|+ ++....   +..++.+.  .+..++++..+|+..+
T Consensus       142 S~TKy~~Gh~d~~~G~v~~~~------~~~~~~~~~~~~~~~G~~l~p~~a---~ll~rgl~--Tl~~Rm~~~~~nA~~l  210 (331)
T d1pffa_         142 SATKYINGHTDVVAGLVCSRA------DIIAKVKSQGIKDITGAIISPHDA---WLITRGTL--TLDMRVKRAAENAQKV  210 (331)
T ss_dssp             ETTTTTSSSSSCCCEEEEECH------HHHHHHHHTCCCCCCCCCCCHHHH---HHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred             cchhhcCCCCccccccccccc------cchhhhhhhhhhhccCCCCCHHHH---HHHHHHHH--HHHHHHHHHHHHHHHH
Confidence            999999874   348888876      33333322222222233 333322   22333332  3667899999999999


Q ss_pred             HHHHHHC
Q 013217          305 ASRLVEL  311 (447)
Q Consensus       305 ~~~L~~~  311 (447)
                      ++.|++.
T Consensus       211 A~~L~~h  217 (331)
T d1pffa_         211 AEFLHEH  217 (331)
T ss_dssp             HHHHHHC
T ss_pred             HHhhhhC
Confidence            9999983

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=99.72  E-value=6e-18  Score=162.15  Aligned_cols=341  Identities=10%  Similarity=-0.029  Sum_probs=183.8

Q ss_pred             cCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCC--cccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH--
Q 013217           21 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGK--RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS--   96 (447)
Q Consensus        21 ~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~--~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs--   96 (447)
                      ...|..|++..+|++|+++|...+.+.+ ....+.  ..+.+.++.+.++ .+++.++++++++.++.   |.+++|+  
T Consensus         3 ~~~nF~pGP~~~p~~V~~a~~~~~~~~~-~~~~~~~~~sHRs~~~~~~~~-~~r~~l~~l~~~~~~~~---i~~~~gt~~   77 (360)
T d1w23a_           3 QVFNFNAGPSALPKPALERAQKELLNFN-DTQMSVMELSHRSQSYEEVHE-QAQNLLRELLQIPNDYQ---ILFLQGGAS   77 (360)
T ss_dssp             CCEECCSSSCCCCHHHHHHHHHTSSSST-TSSSCGGGSCTTSHHHHHHHH-HHHHHHHHHHTCCTTEE---EEEESSHHH
T ss_pred             ceeEeCCCCcCCCHHHHHHHHHHHHhhc-ccCccccccCcCCHHHHHHHH-HHHHHHHHHhCCCCCCE---EEEeCCcHH
Confidence            3457788999999999999998776532 211110  1123445555554 78899999999986642   3345555  


Q ss_pred             HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 013217           97 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG  176 (447)
Q Consensus        97 ~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~  176 (447)
                      .++.++...+.++++.+++....+.+.   .+.   ..+...+.........   +....+.++++....  ....+.++
T Consensus        78 ~~~~~~~~~~~~~~~~v~~~~~g~~~~---~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~  146 (360)
T d1w23a_          78 LQFTMLPMNLLTKGTIGNYVLTGSWSE---KAL---KEAKLLGETHIAASTK---ANSYQSIPDFSEFQL--NENDAYLH  146 (360)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEECSHHHH---HHH---HHHHTTSEEEEEEECG---GGTSCSCCCGGGCCC--CTTEEEEE
T ss_pred             HHHHHHHhhhcccCcccceeeccchhh---hhH---HHHHHhhhcceeeccc---cccccchhhhhhccc--ccccceeE
Confidence            445556666788889998875322211   110   0112223222222222   112233333333332  23344443


Q ss_pred             CCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCceEEeecCCc------c
Q 013217          177 ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPV------L  250 (447)
Q Consensus       177 ~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~------~  250 (447)
                      . ..+...|+++|.++|+++|+++++|++|++|.+..++..+   ++|+++++.||+++ |.+|+++.++...      .
T Consensus       147 ~-~tg~~~~~~~i~~~~~~~g~l~ivDavqs~g~~~id~~~~---~vd~~~~~~~k~~~-~~~~~~~~~~~~~~~~~~~~  221 (360)
T d1w23a_         147 I-TSNNTIYGTQYQNFPEINHAPLIADMSSDILSRPLKVNQF---GMIYAGAQKNLGPS-GVTVVIVKKDLLNTKVEQVP  221 (360)
T ss_dssp             E-ESEETTTTEECSSCCCCCSSCEEEECTTTTTSSCCCGGGC---SEEEEETTTTTSCT-TCEEEEEEHHHHCSCCTTCC
T ss_pred             e-cCCccccceeeeeccccceeeEEeeccccccccccccccc---cceEEeeccccccC-CcceeeEechhhhcccccCC
Confidence            2 2233678899999999999999999999999876655443   37777777777532 2234444433100      0


Q ss_pred             -hhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhH-HHHHHHHHHHHHHHHHHHHHC-CcEeee-C-CCCCe-e
Q 013217          251 -GVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF-KVYQNKVVSNCRALASRLVEL-GYKLVS-G-GSDNH-L  324 (447)
Q Consensus       251 -~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~-~~~~~-~  324 (447)
                       ...+.....   ......++......+...++......+. ....++...++.......... .+.... . ...++ .
T Consensus       222 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~v  298 (360)
T d1w23a_         222 TMLQYATHIK---SDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMN  298 (360)
T ss_dssp             GGGCHHHHHH---TTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSE
T ss_pred             cchhhhhhhh---hhhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhcccccccCCChhhcceeE
Confidence             000111111   1112234444433333333333222222 333344444444444444332 222222 1 11222 2


Q ss_pred             EEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          325 VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       325 ~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      +.+.+. .+...+++...|.++||.+..+    +.   .-+++|+|+...++    .||+++|++++++..++
T Consensus       299 vsf~i~-~~~~~~~~~~~l~~~GI~~~~G----~~---~~ggiRiS~~~~~t----~e~V~~Li~~~~~~~~~  359 (360)
T d1w23a_         299 VTFNLR-NEELNQQFLAKAKEQGFVGLNG----HR---SVGGCRASIYNAVP----IDACIALRELMIQFKEN  359 (360)
T ss_dssp             EEEECS-SHHHHHHHHHHHHHTTEESCBC----CT---TTCSEEEECCTTSC----HHHHHHHHHHHHHHHHH
T ss_pred             EEEEcC-CCccHHHHHHHHHHCCCeeeeC----CC---ccCcEEEEeeCCCC----HHHHHHHHHHHHHHHhc
Confidence            333443 2344567888899999997543    21   11369999765556    99999999999887764

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.72  E-value=1.4e-17  Score=161.92  Aligned_cols=284  Identities=12%  Similarity=0.028  Sum_probs=172.6

Q ss_pred             HHHHHHHHHHHHHHcCCCCCccceeeecCCcH-HHHHHHHHHh--------cCCCCEEEEecCCCCcccCCCcccccccc
Q 013217           65 DELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAI--------LKPHDRIMGLDLPHGGHLSHGFMTPKRRV  135 (447)
Q Consensus        65 ~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a~~~~~~al--------~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~  135 (447)
                      .+|++.+++.-...-++..+..  .|.+++|+ +++.+++.+|        ++|||+|+++.|.|..+..        .+
T Consensus       103 ~~L~~~i~~lh~~~gna~t~~~--~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~--------~~  172 (425)
T d2hoxa1         103 FELEKTIKELHEVVGNAAAKDR--YIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFRE--------QT  172 (425)
T ss_dssp             HHHHHHHHHHHHHHTCBCCTTC--EEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHH--------HH
T ss_pred             HHHHHHHHHHHhhhCCCCCCCC--EEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHH--------HH
Confidence            4677555443333333332221  35568997 9999999998        5799999999988765421        12


Q ss_pred             ccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC-CCChHHHHHHHHHhCCEEEEehhhhccccccc
Q 013217          136 SGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAAS  214 (447)
Q Consensus       136 ~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~  214 (447)
                      .+.+.  ..       ..+.+|.+.+++.+++ +|+++++++||||+ ..- +     +-.+++.+|.|+++. +..+. 
T Consensus       173 ~~~~~--~~-------~~~~~D~~~~~~~~~~-~~~ii~l~sPnNPtG~l~-~-----~v~~~~~~I~DEaY~-~~~f~-  234 (425)
T d2hoxa1         173 KYFDK--KG-------YVWAGNAANYVNVSNP-EQYIEMVTSPNNPEGLLR-H-----AVIKGCKSIYDMVYY-WPHYT-  234 (425)
T ss_dssp             HHSCB--TT-------EEEEEEGGGGTTCSCG-GGEEEEEESSCTTTCCCC-C-----CSSTTCEEEEECTTC-STTTS-
T ss_pred             HHcCC--CC-------CccCCCHHHHHhhCCC-CceEEEEECCCCCCcchh-h-----hhhhCCEEEEecccc-Ccccc-
Confidence            22221  11       1234667777776766 89999999999996 321 0     122589999999963 21111 


Q ss_pred             cCCCCCC-cccEEEeCCCccc--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc-----
Q 013217          215 VVADPFK-YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-----  286 (447)
Q Consensus       215 ~~~~~~~-~~Di~~~s~~K~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~-----  286 (447)
                        +.+.. .-++++.|++|++  +|+|.||++++++     .+.+++.........|.+...++++++ +++...     
T Consensus       235 --~~~~~~~~~Ivl~S~SK~fglaGlRiGw~i~~~~-----~i~~~~~~~~~~~~~~vs~~~Q~aa~~-aL~~~~~~~~~  306 (425)
T d2hoxa1         235 --PIKYKADEDILLFTMSKFTGHSGSRFGWALIKDE-----SVYNNLLNYMTKNTEGTPRETQLRSLK-VLKEVVAMVKT  306 (425)
T ss_dssp             --CCCSCBCCSEEEEEHHHHTSCGGGCCEEEEECCH-----HHHHHHHHHHHHHTSSCCHHHHHHHHH-HHHHHHHHHHH
T ss_pred             --chhhhcCCeEEEEeCHHhccCcchheeeEEeCCH-----HHHHHHHHhhccCcccCCHHHHHHHHH-HhhccHHHHHH
Confidence              11111 2479999999985  6899999888764     566665543222223344444544433 444311     


Q ss_pred             -----ChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeC--------------CCCCeeEEecCCCCCCCHHHHHHHHhhcC
Q 013217          287 -----SPEFKVYQNKVVSNCRALASRLVELGYKLVSG--------------GSDNHLVLVDLRPMGIDGARVEKILDMAS  347 (447)
Q Consensus       287 -----~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--------------~~~~~~~~v~~~~~~~~~~~~~~~L~~~g  347 (447)
                           ...++...+.+.++.+.+.+.|.+.+.-.+..              .+...+.|+.+...  +..++.++|.++|
T Consensus       307 ~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~--~~~~~~~lL~e~g  384 (425)
T d2hoxa1         307 QKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE--EDKDCYQTFQNGR  384 (425)
T ss_dssp             HTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG--GGCSHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeeeeCCCC--hHHHHHHHHHhCC
Confidence                 12245556777888888888888755322210              01122345555322  2345778899999


Q ss_pred             eEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          348 ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       348 I~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                      |.++.+...+    ..++++||++  .++    +++++++.+.|+++++
T Consensus       385 I~v~pGs~FG----~~~~yvRisl--~~~----~e~ld~~l~rL~~~v~  423 (425)
T d2hoxa1         385 INTQNGVGFE----ASSRYVRLSL--IKT----QDDFDQLMYYLKDMVK  423 (425)
T ss_dssp             EECEEGGGGT----SCTTEEEEEC--SSC----HHHHHHHHHHHHHHHT
T ss_pred             EEEEechhcC----CCCCEEEEEe--cCC----HHHHHHHHHHHHHHHh
Confidence            9997643322    2356899985  334    8889999999988775

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=2.4e-16  Score=150.34  Aligned_cols=212  Identities=14%  Similarity=0.145  Sum_probs=146.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccc
Q 013217           59 GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGT  138 (447)
Q Consensus        59 ~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~  138 (447)
                      .|++..+.+|    ++++++-|.+.     .+...||..|+. ++.+++++||+|++....|++.....    ...+...
T Consensus        52 ~gnPT~~~lE----~~la~LE~~~~-----a~~~sSGmaAi~-~~l~~l~~gd~iv~~~~~yg~t~~~~----~~~l~~~  117 (393)
T d1n8pa_          52 SQNPNRENLE----RAVAALENAQY-----GLAFSSGSATTA-TILQSLPQGSHAVSIGDVYGGTHRYF----TKVANAH  117 (393)
T ss_dssp             TCCHHHHHHH----HHHHHHTTCSE-----EEEESCHHHHHH-HHHHTSCSSCEEEEESSCCHHHHHHH----HHTSTTT
T ss_pred             CCChHHHHHH----HHHHHHhCCce-----EEEecCchhHHH-hhhhcccCCCeeeeeeeecccchhhh----hhhhhcc
Confidence            4778888998    58889988775     345689987775 45677899999999988777653211    0111222


Q ss_pred             cceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHH----HhCCEEEEehhhhccccc
Q 013217          139 SIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIAD----AVGALLMMDMAHISGLVA  212 (447)
Q Consensus       139 g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~----~~g~~livD~a~~~g~~~  212 (447)
                      |.  ++..  ++     .+.+++++++++ +|++|++..+.||.  +.|+++|+++|+    ++|++++||.+.+...  
T Consensus       118 gi--~~~~--~~-----~~~~~~~~~i~~-~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDnT~atP~--  185 (393)
T d1n8pa_         118 GV--ETSF--TN-----DLLNDLPQLIKE-NTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPY--  185 (393)
T ss_dssp             CS--CCEE--ES-----SHHHHHHHHSCS-SEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHH--
T ss_pred             cc--eeEE--ee-----cchHHHHHHhhh-hcceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEEecCccCcc--
Confidence            32  2222  11     346789998887 99999999888887  789999999999    6789999999854332  


Q ss_pred             cccCCCCCC-cccEEEeCCCcccCCC---CCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcCh
Q 013217          213 ASVVADPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSP  288 (447)
Q Consensus       213 ~~~~~~~~~-~~Di~~~s~~K~l~Gp---~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~  288 (447)
                         ...|+. ++|+++.|+.|+++|-   -+|.++.+++     ++.+++...... ..+.+++.   ..+..++.+.+ 
T Consensus       186 ---~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~-----~~~~~l~~~~~~-~G~~~~p~---~a~ll~rgl~T-  252 (393)
T d1n8pa_         186 ---ISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNK-----PLYERLQFLQNA-IGAIPSPF---DAWLTHRGLKT-  252 (393)
T ss_dssp             ---HCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCH-----HHHHHHHHHHHH-HCCCCCHH---HHHHHHHHHTT-
T ss_pred             ---cCCchhhCCCEEEEccccccCCCCccccceeeecch-----hHHHHHHHHHhh-cCCCCChH---HHHHHHhCCcc-
Confidence               234565 6999999999999874   3477777663     566655432211 11122322   22334555543 


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Q 013217          289 EFKVYQNKVVSNCRALASRLVE  310 (447)
Q Consensus       289 ~~~~~~~~~~~~~~~l~~~L~~  310 (447)
                       +.-++++..+|+..+++.|+.
T Consensus       253 -l~lR~~~~~~nA~~lA~~L~~  273 (393)
T d1n8pa_         253 -LHLRVRQAALSANKIAEFLAA  273 (393)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHTS
T ss_pred             -hhhHHHHHHHHHHHHHHHHHh
Confidence             677899999999999999975

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=99.69  E-value=5e-16  Score=148.95  Aligned_cols=232  Identities=20%  Similarity=0.113  Sum_probs=152.3

Q ss_pred             CCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcc
Q 013217           50 EGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFM  129 (447)
Q Consensus        50 ~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~  129 (447)
                      .||...|  .+++..+.+|    ++++++-|.+.     .+.+.||..|+.+++.+++++||+|++....|++....-  
T Consensus        48 ~~~~YsR--~~nPT~~~LE----~~la~LE~~~~-----a~~~~SGmaAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~--  114 (421)
T d2ctza1          48 FGNIYSR--IMNPTVDVLE----KRLAALEGGKA-----ALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQF--  114 (421)
T ss_dssp             GGGSCBT--TBCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHH--
T ss_pred             CCceecC--CCCHHHHHHH----HHHHHHhCCCe-----EEEecChHHHHHHHHHhhcccccceeecCCcCCchhHHH--
Confidence            3555554  4778888998    57888888875     345699999999999999999999999998887753210  


Q ss_pred             ccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhh
Q 013217          130 TPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHI  207 (447)
Q Consensus       130 ~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~  207 (447)
                        ...+...|  +++..++.     .-+.+..++++++ +||+|++.++.||+  +.|+++|+++|+++|+++++|.+.+
T Consensus       115 --~~~~~~~g--i~~~~~d~-----~~~~~~~~~~~~~-~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vvDnT~a  184 (421)
T d2ctza1         115 --KVTLKRLG--IEVRFTSR-----EERPEEFLALTDE-KTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFG  184 (421)
T ss_dssp             --HTHHHHTT--CEEEECCT-----TCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGG
T ss_pred             --HHHHhhcc--ccceeccc-----ccCcchhccccCC-CceEEEEcCCCcceeEecchHHHHHHHHhcCCceEeccccc
Confidence              01112223  34444221     1234566666666 89999999999997  7899999999999999999999854


Q ss_pred             ccccccccCCCCCC-cccEEEeCCCcccCCCC---CceEEeecCCcc---hh-------------hHHHHhhh------c
Q 013217          208 SGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVL---GV-------------ELESAINN------A  261 (447)
Q Consensus       208 ~g~~~~~~~~~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~---~~-------------~~~~~i~~------~  261 (447)
                      .+    +....|+. ++|+++.|++|+++|-.   ||.++.+++...   ..             .+.+.+..      .
T Consensus       185 ~t----P~~~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (421)
T d2ctza1         185 MG----GYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKA  260 (421)
T ss_dssp             GG----GTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHH
T ss_pred             cc----ceeccccccCCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHH
Confidence            21    12345665 79999999999998754   377777654110   00             00111100      0


Q ss_pred             ---cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-Cc
Q 013217          262 ---VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GY  313 (447)
Q Consensus       262 ---~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~  313 (447)
                         ......+.+++..   .+..++.+.+  +.-++++..+|+..+++.|++. .+
T Consensus       261 ~~~~~~~~G~~~sP~~---a~l~~rgl~T--L~lRm~~~~~nA~~vA~~L~~hp~V  311 (421)
T d2ctza1         261 RVDGLRDQGQALGPFE---AWVVLLGMET--LSLRAERHVENTLHLAHWLLEQPQV  311 (421)
T ss_dssp             HHTHHHHHCCCCCHHH---HHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred             HHHHHHhccCCCCHHH---HHHHhcCCcc--hhhHHHHHHHHHHHHHhhhccCCCe
Confidence               0000011122222   2334555543  6778999999999999999983 44

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=99.65  E-value=1.2e-14  Score=140.16  Aligned_cols=292  Identities=16%  Similarity=0.058  Sum_probs=181.0

Q ss_pred             HHHHHHHHcCCCCCccceeeecCCcHHHHHHHHH-Hh-cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecc
Q 013217           71 CQKRALAAFNLDENKWGVNVQPLSGSPANFEVYT-AI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR  148 (447)
Q Consensus        71 ~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~-al-~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  148 (447)
                      -+.+++++.|.+.    ++.++.+|++|....+. +. ....+++++....|+.....      ....+...+++++.++
T Consensus       113 ~q~~l~eltGmd~----~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v------~~t~a~~~g~~vv~v~  182 (437)
T d1wyua1         113 YQTMIAELAGLEI----ANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAV------LRAYLEAVGAKLLTLP  182 (437)
T ss_dssp             HHHHHHHHHTSSE----ECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHH------HHHHHHHTTCEEEEEC
T ss_pred             HHHHHHHhhCCCc----cccCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhh------hhhhcccceeeEEeee
Confidence            4579999999996    68899999866554443 32 23557888877666543211      0112223345766665


Q ss_pred             cCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC-CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-cccEE
Q 013217          149 LDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVV  226 (447)
Q Consensus       149 ~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-~~Di~  226 (447)
                      .+  ++..+.++    +.+ ++..|++..||+.+ ..|+++|.+++++.|+++++|+.-.+    .+....|-. ++||+
T Consensus       183 ~~--~~~~~~~~----~~~-~~Aavmi~~Pnt~G~~ed~~~i~~~~h~~G~l~~~~ad~~a----l~~l~~Pg~~GaDi~  251 (437)
T d1wyua1         183 LE--GGRTPLPE----VGE-EVGAVVVQNPNFLGALEDLGPFAEAAHGAGALFVAVADPLS----LGVLKPPGAYGADIA  251 (437)
T ss_dssp             CB--TTBCCCCC----CCT-TEEEEEEESSCTTSBCCCHHHHHHHHHHTTCEEEEECCTTG----GGTBCCHHHHTCSEE
T ss_pred             cc--cccchhhh----hcc-ceeEEEEccccccccccchHHHHHHhhhccceEEeeechhh----hhccccccccccceE
Confidence            54  23233222    334 78888898888777 66899999999999999888865321    122233323 69999


Q ss_pred             EeCCCccc------CCCCCceEEeecCCc----------------------chhhHHHHhhhccCCCCCCCCcHHHHHHH
Q 013217          227 TTTTHKSL------RGPRGGMIFFKKDPV----------------------LGVELESAINNAVFPGLQGGPHNHTIGGL  278 (447)
Q Consensus       227 ~~s~~K~l------~Gp~gG~i~~~~~~~----------------------~~~~~~~~i~~~~~~~~~g~p~~~~~aal  278 (447)
                      +++ ||.|      +||.+|++.++++..                      ....-.+.+++.......++.........
T Consensus       252 ~g~-~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a  330 (437)
T d1wyua1         252 VGD-GQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMG  330 (437)
T ss_dssp             EEE-CTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHH
T ss_pred             eec-cceeccccCCCcCccccccccchhhccccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHH
Confidence            888 5544      466669999987411                      00000011111111111122222111111


Q ss_pred             HHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCC
Q 013217          279 AVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPG  357 (447)
Q Consensus       279 ~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~  357 (447)
                      ++-+..+..+|+++..++...+++++++.|.+ .|++++.+..--|-+++++.   .+..++.++|.++||.......| 
T Consensus       331 ~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~~~f~ef~v~~~---~~~~~i~k~L~d~G~~~~~~~~~-  406 (437)
T d1wyua1         331 AMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALP---KDPEAVRRALAERGFHGATPVPR-  406 (437)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECS---SCHHHHHHHHHHTTCCCCEECCT-
T ss_pred             HHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhcCCeeccCCCCeeeEEEEECC---CCHHHHHHHHHhCCCCCCccccc-
Confidence            12233444567899999999999999999988 58887654332344556543   36788999999999965322112 


Q ss_pred             CCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          358 DKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       358 ~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                         ....+.+.+++...+|    ++|++++++++++++
T Consensus       407 ---~~~~~~lli~~TE~~t----keeiD~~v~al~eil  437 (437)
T d1wyua1         407 ---EYGENLALFAATELHE----EEDLLALREALKEVL  437 (437)
T ss_dssp             ---TSCSSEEEEECCTTCC----HHHHHHHHHHHHHHC
T ss_pred             ---CCCCCeEEEecCCCCC----HHHHHHHHHHHHHhC
Confidence               1234679999888877    999999999998864

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.9e-13  Score=132.00  Aligned_cols=318  Identities=14%  Similarity=0.113  Sum_probs=181.8

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc----
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  107 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~----  107 (447)
                      -.|.|.+|+.+.+.+ +.  +....++  ......+    .+.+.++.+.+.     ....+||++|+..++....    
T Consensus        58 ~~p~i~~Av~~q~~~-~~--~~~~~~~--~~~~~~~----~~~~~~~~~~~~-----v~~~~sGseA~e~Aik~ar~~~~  123 (404)
T d2byla1          58 CHPKIVNALKSQVDK-LT--LTSRAFY--NNVLGEY----EEYITKLFNYHK-----VLPMNTGVEAGETACKLARKWGY  123 (404)
T ss_dssp             TCHHHHHHHHHHHTT-CC--CCCTTEE--ESSHHHH----HHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhh-CC--Ccccccc--cchHHHH----HHhhhhcccccc-----cccccCccccchhHHHHHHHHhh
Confidence            479999999887754 21  1111111  1222233    346777777653     2345899999998876532    


Q ss_pred             -----C-CCCEEEEecCCCCcccCCCccccccccccccceeEEEec-ccCCCC---CCCCHHHHHHHhhhhCCcEEEEcC
Q 013217          108 -----K-PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY-RLDEST---GLVDYDMLEKTAILFRPKLIIAGA  177 (447)
Q Consensus       108 -----~-pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~---~~id~~~l~~~~~~~~~klii~~~  177 (447)
                           . ...+++...-.+.|... +      .+...+.......+ +..++.   -..|++++++++.+.+..+|++.+
T Consensus       124 ~~~~~~~~~~~i~~~~~~~hg~t~-~------~~~~~~~~~~~~~~~p~~~~~~~~p~~d~~~l~~~l~~~~iAaviiEP  196 (404)
T d2byla1         124 TVKGIQKYKAKIVFAAGNFWGRTL-S------AISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEP  196 (404)
T ss_dssp             HTTCCCTTCCEEEEETTCCCCCSH-H------HHTTCCCHHHHTTSCSCCTTEEEECTTCHHHHHHHHTSTTEEEEEECS
T ss_pred             hccccccccccccccCCCcccccc-c------eeccCCCcccccCCCCCCCCeeEecccCHHHHHHhcCCCCeEEEEECC
Confidence                 1 22466665543322210 0      00011000000000 000000   135789999998765666788763


Q ss_pred             C-CCCC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-CC-CCC-cccEEEeCCCcccCC--CCCceEEeec
Q 013217          178 S-AYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-AD-PFK-YCDVVTTTTHKSLRG--PRGGMIFFKK  246 (447)
Q Consensus       178 ~-~~~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~~-~~~-~~Di~~~s~~K~l~G--p~gG~i~~~~  246 (447)
                      . ...+ ..+    +++|+++|++||+++|+|+++ .|+--.+.. .. -++ ..|+++++  |.|.|  .+.|.+++++
T Consensus       197 i~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~-tGfgR~G~~~a~~~~gv~PDi~~~g--K~l~gG~~p~~av~~~~  273 (404)
T d2byla1         197 IQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQ-TGLARTGRWLAVDYENVRPDIVLLG--KALSGGLYPVSAVLCDD  273 (404)
T ss_dssp             SBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTT-TTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSSCCEEEEECH
T ss_pred             ccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccc-cccccccccchhhhcCCCCCEEEEC--chhhCCCccceeeeech
Confidence            2 1222 222    799999999999999999997 454222211 00 011 25999776  99864  4568888887


Q ss_pred             CCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeC--CCCCee
Q 013217          247 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSG--GSDNHL  324 (447)
Q Consensus       247 ~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~~~~~~  324 (447)
                            ++.+.+......+++++ ++..+++..+.|+.+.++.+   .++..+..+++.+.|.+..-+.+..  +... +
T Consensus       274 ------~i~~~~~~~~~~~T~~g-npl~~aaa~a~L~~i~~~~l---~~~~~~~g~~l~~~l~~l~~~~i~~vRg~Gl-~  342 (404)
T d2byla1         274 ------DIMLTIKPGEHFSTYGG-NPLGCRVAIAALEVLEEENL---AENADKLGIILRNELMKLPSDVVTAVRGKGL-L  342 (404)
T ss_dssp             ------HHHTTSCTTSSCCSSTT-CHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHTSCTTTEEEEEEETT-E
T ss_pred             ------hhhhccCCCCCCcCCCc-CHHHHHHHHHHHHHHHhcCc---hhhhhHhhHHHHHHHHhhccccceeeeeccc-E
Confidence                  67766655443333332 55566666667887765444   5566666777888887632111111  1111 2


Q ss_pred             EEecCCC-CCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217          325 VLVDLRP-MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       325 ~~v~~~~-~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      .-+++.. ......++...|.++||.+...         ....||+.++...|    ++|++++.++|+++|..
T Consensus       343 ~~i~~~~~~~~~~~~~~~~l~~~Gvl~~~~---------~~~~i~l~PpL~it----~~~id~~~~~l~~al~~  403 (404)
T d2byla1         343 NAIVIKETKDWDAWKVCLRLRDNGLLAKPT---------HGDIIRFAPPLVIK----EDELRESIEIINKTILS  403 (404)
T ss_dssp             EEEEECCCSSCCHHHHHHHHHHTTEECEEE---------ETTEEEECCCTTCC----HHHHHHHHHHHHHHHHT
T ss_pred             EEEEEecCCchhHHHHHHHHHhCCeEEecC---------CCCEEEEECCcCCC----HHHHHHHHHHHHHHHHc
Confidence            2233322 2335567888888999987431         13479999876666    99999999999999874

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=99.55  E-value=2.4e-12  Score=125.39  Aligned_cols=294  Identities=15%  Similarity=0.132  Sum_probs=183.8

Q ss_pred             HHHHHHHcCCCCCccceeeecCCcHHHH-HHHHHHhc---CCC----CEEEEecCCCCcccCCCccccccccccccceeE
Q 013217           72 QKRALAAFNLDENKWGVNVQPLSGSPAN-FEVYTAIL---KPH----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE  143 (447)
Q Consensus        72 ~~~~~~~~g~~~~~~~~~v~~~sGs~a~-~~~~~al~---~pg----d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  143 (447)
                      +..+++++|.+.    +|..+..|++|. .+++++..   +.|    ..++...+.+.....       ......+  ..
T Consensus       112 Qtmi~eLTGMdv----aNaS~yDGatA~aeA~~ma~r~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~--~~  178 (471)
T d1wyub1         112 GEYLKALTGMDA----ITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNP-------ATASMAG--YQ  178 (471)
T ss_dssp             HHHHHHHHTCSE----EECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHH-------HHHHHTT--CE
T ss_pred             HHHHHHHhCCCc----cccccchHHHHHHHHHHHHHHHhhhcccccccccccCCccccccee-------eeeeccc--ce
Confidence            478999999996    588888887544 33333321   122    223333333322110       0011122  34


Q ss_pred             EEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCCC--CChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC
Q 013217          144 SMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRD--FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK  221 (447)
Q Consensus       144 ~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~~--~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~  221 (447)
                      .+..+.+ ..+..|.+.+...... ++..+++..+++.+.  .+.+++.+++++.|..+++|.+....+.  ++.+.+-.
T Consensus       179 ~~~~~~~-~~~~~~~~~~~~~~~~-~~a~v~v~~p~~~g~~e~~~~~~~~~~h~~g~~~~~~~~~~~~~~--~l~~p~~~  254 (471)
T d1wyub1         179 VREIPSG-PEGEVDLEALKRELGP-HVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIM--GWARPGDM  254 (471)
T ss_dssp             EEEECBC-TTSSBCHHHHHHHCST-TEEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTT--TTCCHHHH
T ss_pred             eeccccc-ccccccchhhhhhhhc-cccceeeccCCCcccccchhhhhHHHHHhccccccccccchhhhh--hccccCcc
Confidence            4444444 4578899999888766 677788887777763  3588999999999999999986432211  11111112


Q ss_pred             cccEEEeCCCccc------CCCCCceEEeecCCcchhhHHHHhhhc--------------cCCC----CCCCCcHHHHHH
Q 013217          222 YCDVVTTTTHKSL------RGPRGGMIFFKKDPVLGVELESAINNA--------------VFPG----LQGGPHNHTIGG  277 (447)
Q Consensus       222 ~~Di~~~s~~K~l------~Gp~gG~i~~~~~~~~~~~~~~~i~~~--------------~~~~----~~g~p~~~~~aa  277 (447)
                      ++|+++...|++|      +||..|++.+++      ++...+...              .-..    ..++.+  .+.+
T Consensus       255 g~div~vg~~q~~G~P~~~GGP~~G~~a~~~------~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnq--aL~a  326 (471)
T d1wyub1         255 GFDVVHLNLHKTFTVPHGGGGPGSGPVGVKA------HLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGN--FLAL  326 (471)
T ss_dssp             TCSEEECCTTTTTCCCCTTSCCCCCCEEECG------GGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSC--HHHH
T ss_pred             cccccccccccccccccccccccccceeehh------hhhccCCCceecCCCccccccCCCcccccchhhhhhh--HHHH
Confidence            5788888888876      344448999988      343322100              0000    012222  1222


Q ss_pred             HH--HHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCC
Q 013217          278 LA--VCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSV  355 (447)
Q Consensus       278 l~--~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~  355 (447)
                      ++  +-+..+..+|+++..++...++.+++++|+..|+++..++.--+-+++++ +.+++..++.+.|.+.||..-....
T Consensus       327 l~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~~G~~~~~~~~ff~EFvv~~-~~~~~~~~i~k~L~~~G~~~~~~~~  405 (471)
T d1wyub1         327 VRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGYRVPYDGPSMHEFVAQP-PEGFRALDLAKGLLELGFHPPTVYF  405 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSCSSCCSCEEEBC-STTCCHHHHHHHHHHTTCCCCEESC
T ss_pred             HHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhhcCceeccCcceeeEEeecC-CCCCCHHHHHHHHHHcCCCCCcccC
Confidence            22  23344556788999999999999999999889999866443334456665 3466778899989889985422112


Q ss_pred             CCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHHH
Q 013217          356 PGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITL  399 (447)
Q Consensus       356 p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~  399 (447)
                      |    ....+.+-++....+|    ++|||+++++|++++++..
T Consensus       406 p----~~~~~~llv~vTE~~t----kedID~lv~aL~~i~~e~~  441 (471)
T d1wyub1         406 P----LIVKEALMVEPTETEA----KETLEAFAEAMGALLKKPK  441 (471)
T ss_dssp             S----TTSTTCEEECCCTTSC----HHHHHHHHHHHHHHHTSCH
T ss_pred             c----CCCCCeEEEecCCCCC----HHHHHHHHHHHHHHHHhhH
Confidence            2    1234578898888888    9999999999999998764

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.53  E-value=3e-12  Score=123.62  Aligned_cols=318  Identities=13%  Similarity=0.071  Sum_probs=172.5

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc----
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  107 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~----  107 (447)
                      -.|.|.+|+.+.+.+. ...++.   .. ......++    +.+.++.+.+.     .....||++|+..++....    
T Consensus        56 ~~p~v~~Ai~~q~~~~-~~~~~~---~~-~~~~~~~~----~~~~~~~~~~~-----v~~~~sgs~a~~~a~k~ar~~~~  121 (404)
T d1z7da1          56 CHPNILNAMINQAKNL-TICSRA---FF-SVPLGICE----RYLTNLLGYDK-----VLMMNTGAEANETAYKLCRKWGY  121 (404)
T ss_dssp             TCHHHHHHHHHHHTTC-SCCCTT---SE-EHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhC-CCcccc---cc-hHHHHHHH----Hhhhhccccce-----eeeeccccchHHHHHHHHHHHHh
Confidence            3799999988776542 111111   11 12223333    45677777653     2345899988887765321    


Q ss_pred             ------CCCCEEEEecCCCCcccCCCccccccccccccce-eEEEecccCCCC---CCCCHHHHHHHhhhhCCcEEEEcC
Q 013217          108 ------KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDEST---GLVDYDMLEKTAILFRPKLIIAGA  177 (447)
Q Consensus       108 ------~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~---~~id~~~l~~~~~~~~~klii~~~  177 (447)
                            .....++.....+.|....       .....+.. ++....+..+..   ..-+.+.++..+.+.++.+||+.+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~hg~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EP  194 (404)
T d1z7da1         122 EVKKIPENMAKIVVCKNNFSGRTLG-------CISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEP  194 (404)
T ss_dssp             HTSCCCTTCCEEEEETTC---------------------------------CEEEECTTCHHHHHHHHTSTTEEEEEECS
T ss_pred             hcccccccccccccccccCCCCccc-------ccccccccccccCCCCCCccccccccchHHHHHHHhcCCCEEEEEEEE
Confidence                  1223566554333222110       00111110 000000000010   123567777777654567777763


Q ss_pred             C-CCCC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccCC--CCCceEEeec
Q 013217          178 S-AYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRG--PRGGMIFFKK  246 (447)
Q Consensus       178 ~-~~~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~G--p~gG~i~~~~  246 (447)
                      - ...+ ..+    +++|+++|++||+++|+|++| .|+.-.+.. . ..++ ..|+++.+  |.++|  ...|.+++++
T Consensus       195 i~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~-tGfgRtG~~~~~e~~gv~PDivt~g--K~l~gG~~p~~~v~~~~  271 (404)
T d1z7da1         195 IQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQ-TGLGRTGKLLCVHHYNVKPDVILLG--KALSGGHYPISAVLAND  271 (404)
T ss_dssp             SBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTT-TTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSSCCEEEEECH
T ss_pred             EcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCc-cCCCcccccccccccCCCCCEEEEc--ccccCCCCCcccccchH
Confidence            2 2223 222    799999999999999999998 454322211 0 0011 36999777  99854  5678888888


Q ss_pred             CCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH----CCcE-eeeCCCC
Q 013217          247 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----LGYK-LVSGGSD  321 (447)
Q Consensus       247 ~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~-~~~~~~~  321 (447)
                            ++.+.+......+++++ ++..+++..+.++.+..+.+   .+++.+....+.+.|.+    .++. -+.+ ..
T Consensus       272 ------~i~~~~~~~~~~~T~~g-npl~~aaa~a~L~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~v~~vrg-~G  340 (404)
T d1z7da1         272 ------DIMLVIKPGEHGSTYGG-NPLAASICVEALNVLINEKL---CENAEKLGGPFLENLKRELKDSKIVRDVRG-KG  340 (404)
T ss_dssp             ------HHHTTCCTTCCCCTTTT-CHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHTTCTTEEEEEE-ET
T ss_pred             ------HHHccCCCCCcCcCCCC-Ccchhhhhhhhhhhhhcchh---hhhhccchhHHHHHHHHHHhcCCCeEEEEe-eC
Confidence                  67766655433333332 45555555556776554443   34444444445444433    3321 1111 11


Q ss_pred             CeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217          322 NHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  398 (447)
Q Consensus       322 ~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~  398 (447)
                      . +..+.+.....+..++...|.++||.+...         ....||+.++...+    ++|++++.++|+++++..
T Consensus       341 l-~~~i~~~~~~~~~~~~~~~l~~~Gl~~~~~---------~~~~ir~~Ppl~it----~~~id~~~~~l~~alk~~  403 (404)
T d1z7da1         341 L-LCAIEFKNELVNVLDICLKLKENGLITRDV---------HDKTIRLTPPLCIT----KEQLDECTEIIVKTVKFF  403 (404)
T ss_dssp             T-EEEEEECTTTCCHHHHHHHHHHTTEECCEE---------TTTEEEECCCTTCC----HHHHHHHHHHHHHHHHHH
T ss_pred             c-EEEEEEcCCcccHHHHHHHHHhCCeEEecC---------CCCEEEEECCcCCC----HHHHHHHHHHHHHHHHhh
Confidence            2 233455544445667888888999987431         23579998775555    999999999999998753

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.47  E-value=9e-12  Score=119.38  Aligned_cols=309  Identities=15%  Similarity=0.144  Sum_probs=174.5

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh--cCC
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP  109 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al--~~p  109 (447)
                      -.|.+.+++...+.+..  ..+..  + ..+...+   .+ +++.+......+   -....+||++|+..++...  ...
T Consensus        54 ~hp~v~~a~~~~~~~~~--~~~~~--~-~~~~~~~---la-~~l~~~~~~~~~---~v~f~~sGseA~e~Aik~Ar~~t~  121 (387)
T d1vefa1          54 GNPEVVEAVKRQAETLM--AMPQT--L-PTPMRGE---FY-RTLTAILPPELN---RVFPVNSGTEANEAALKFARAHTG  121 (387)
T ss_dssp             TCHHHHHHHHHHHHHCC--CCCTT--S-CCHHHHH---HH-HHHHHTSCTTEE---EEEEESSHHHHHHHHHHHHHHHHS
T ss_pred             CcHHHHHHHHHHHHhhc--ccccc--c-CCchHHH---HH-HHhhhhccccce---eeccccCchHHHHHHHHHHHhhcc
Confidence            36999999988776532  11111  1 1121122   22 234433332211   1244689999999887654  234


Q ss_pred             CCEEEEecCCCCcccCCCccccccccccccc-----ee-----EEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCC-
Q 013217          110 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-----YF-----ESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS-  178 (447)
Q Consensus       110 gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~-----~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~-  178 (447)
                      ..+|+...-.|.|.....       ...++.     .+     .+..++      ..|.+.|++.+.+ +...|++.+- 
T Consensus       122 r~~ii~~~~~yHG~t~~~-------~~~s~~~~~~~~~~p~~~~~~~~p------~~d~~~l~~~~~~-~iAavi~EPi~  187 (387)
T d1vefa1         122 RKKFVAAMRGFSGRTMGS-------LSVTWEPKYREPFLPLVEPVEFIP------YNDVEALKRAVDE-ETAAVILEPVQ  187 (387)
T ss_dssp             CCEEEEETTCCCCSSHHH-------HHTCCCHHHHGGGCSCSSCEEEEC------TTCHHHHHHHCCT-TEEEEEECSEE
T ss_pred             cceecccccCCCCCccce-------EeccCCccccCCCCCCCCCceEeC------CCCHHHHHHhcCC-CeEEEEEECCC
Confidence            468887776554432100       011110     00     111111      2478999998876 7778887631 


Q ss_pred             CCCC-C-CC---hHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccCC-CCCceEEeecCCc
Q 013217          179 AYPR-D-FD---YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRG-PRGGMIFFKKDPV  249 (447)
Q Consensus       179 ~~~~-~-~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~G-p~gG~i~~~~~~~  249 (447)
                      ...+ . .+   ++++.++|++||+++|+|+++ .|+--.+.. . .-++ ..|+++.+  |.+.| ...+.+..++   
T Consensus       188 g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~-tGfgR~G~~~~~~~~~v~PDi~~~g--K~l~gG~~~~~~~~~~---  261 (387)
T d1vefa1         188 GEGGVRPATPEFLRAAREITQEKGALLILDEIQ-TGMGRTGKRFAFEHFGIVPDILTLA--KALGGGVPLGVAVMRE---  261 (387)
T ss_dssp             TTTTSEECCHHHHHHHHHHHHHHTCEEEEECTT-TTTTTTSSSSTHHHHTCCCSEEEEC--GGGGTTSSCEEEEEEH---
T ss_pred             CCCCCccCCHHHHHHHHHHHHHcCceEEecccc-cccCccCCCcccccCCcCCceeeec--ccCCCCccccccccce---
Confidence            1122 2 22   789999999999999999997 443222211 0 0001 25999988  98854 3335566665   


Q ss_pred             chhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeC--CCCCeeEEe
Q 013217          250 LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSG--GSDNHLVLV  327 (447)
Q Consensus       250 ~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~~~~~~~~v  327 (447)
                         +..+.+......++++ .++..+++..+.++.+.+.+   ..+++.+..+++.+.|++..-+.+..  +. ..+.-+
T Consensus       262 ---~~~~~~~~~~~g~T~~-gnPla~aaa~a~L~~l~~~~---~~~~v~~~g~~l~~~L~~l~~~~v~~vrg~-Gl~~~i  333 (387)
T d1vefa1         262 ---EVARSMPKGGHGTTFG-GNPLAMAAGVAAIRYLERTR---LWERAAELGPWFMEKLRAIPSPKIREVRGM-GLMVGL  333 (387)
T ss_dssp             ---HHHHTSCTTSSCCSST-TCHHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHTSCCTTEEEEEEE-TTEEEE
T ss_pred             ---eeeeccccCCccccCC-CCcchhhhcccchhhccccc---ccchHhhhhHHHHHHHHhcCCCceEEEeec-ceEEEE
Confidence               4555544433322222 25555555555677765433   45677777888888887632111110  11 112334


Q ss_pred             cCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217          328 DLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  395 (447)
Q Consensus       328 ~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l  395 (447)
                      ++...  ....+.+.+.+.|+.+...         .+..||+.++...|    ++|++++.++|+++|
T Consensus       334 e~~~~--~~~~~~~~~~~~g~l~~~~---------g~~~ir~~Ppl~it----~~~ld~~~~~i~~aL  386 (387)
T d1vefa1         334 ELKEK--AAPYIARLEKEHRVLALQA---------GPTVIRFLPPLVIE----KEDLERVVEAVRAVL  386 (387)
T ss_dssp             EESSC--SHHHHHHHHHHHCEECEES---------STTEEEECCCTTCC----HHHHHHHHHHHHHHH
T ss_pred             EEeCC--chHHHHHHHHHCCCeEEec---------CCCEEEEECCccCC----HHHHHHHHHHHHHHh
Confidence            55432  3456777777888876421         13479998876666    999999999999886

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=99.46  E-value=1.8e-11  Score=118.88  Aligned_cols=315  Identities=15%  Similarity=0.052  Sum_probs=168.9

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh--cCC
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP  109 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al--~~p  109 (447)
                      -.|.|.+|+...+.+. ...      .........    ..+++.++.+...  .  .....||++|+..++...  ..-
T Consensus        69 ~hp~i~~ai~~~~~~~-~~~------~~~~~~~~~----la~~~~~~~~~~~--~--v~f~~sGseA~e~Alk~ar~~t~  133 (427)
T d2gsaa_          69 AHPEVIEALKVAMEKG-TSF------GAPCALENV----LAEMVNDAVPSIE--M--VRFVNSGTEACMAVLRLMRAYTG  133 (427)
T ss_dssp             TCHHHHHHHHHHHTTC-SCC------SSCCHHHHH----HHHHHHHHSTTCS--E--EEEESSHHHHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHHHHHhc-Ccc------ccchhHHHH----HHHHHHhhCCccc--c--ccccCCcHHHHHHHHHHHHHhcC
Confidence            4799999998877542 111      111122222    2346666654332  1  233589999999988754  234


Q ss_pred             CCEEEEecCCCCcccCCCccccccccccccceeEEE--------ecccCCC---CCCCCHHHHHHHhhhh--CCcEEEEc
Q 013217          110 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESM--------PYRLDES---TGLVDYDMLEKTAILF--RPKLIIAG  176 (447)
Q Consensus       110 gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--------~~~~~~~---~~~id~~~l~~~~~~~--~~klii~~  176 (447)
                      ..+|+...-.|.|... +      .+...+......        ..+..++   ...-|+++++++++++  +...||+.
T Consensus       134 r~~ii~~~~~yHG~t~-~------~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~iaavi~E  206 (427)
T d2gsaa_         134 RDKIIKFEGCYHGHAD-M------FLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILE  206 (427)
T ss_dssp             CCEEEEETTCCCCSCG-G------GCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECTTCHHHHHHHHTTSTTTEEEEEEC
T ss_pred             CCeEEEEecccccCcc-e------eeeecCCcccccCCCCCCCCcccCccceeccCcchHHHHHHHHHhCCCCeEEEEEc
Confidence            5688887665544311 0      011111000000        0000000   0135899999999863  34567776


Q ss_pred             CC-CCCC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccCC--CCCC-cccEEEeCCCcccCC-CCCceEEeec
Q 013217          177 AS-AYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLRG-PRGGMIFFKK  246 (447)
Q Consensus       177 ~~-~~~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~--~~~~-~~Di~~~s~~K~l~G-p~gG~i~~~~  246 (447)
                      +- ...+ ..+    +++|+++|++||+++|+|++| .|+ ..+...  .-++ ..|+++.+  |.+.| ...|.+++++
T Consensus       207 pi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~-tG~-r~g~~~~~~~~gi~PDi~~~g--K~lggG~p~~a~~~~~  282 (427)
T d2gsaa_         207 PIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVM-TGF-RIAYGGVQEKFGVTPDLTTLG--KIIGGGLPVGAYGGKR  282 (427)
T ss_dssp             SSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTT-TBT-TTBTTCHHHHTTCCCSEEEEC--GGGGTTSCCEEEEECH
T ss_pred             CCcCCCCCccCCHHHHHHHHHHHHHhceeeeecccc-ccc-eecccchHHhcCCCHHHHhhh--hccCCCcceeeeeehH
Confidence            31 2223 333    899999999999999999998 554 222110  0011 25999888  87754 3346677777


Q ss_pred             CCcchhhHHHHhhhc--cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH----CCcEeeeCCC
Q 013217          247 DPVLGVELESAINNA--VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----LGYKLVSGGS  320 (447)
Q Consensus       247 ~~~~~~~~~~~i~~~--~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~  320 (447)
                            ++.+.+...  ...+.+.+.++..+++..++++.+.++++   .+++.++.++|.+.|++    .++.....+.
T Consensus       283 ------~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~~~l---~~~~~~~g~~l~~~L~~l~~~~~~~~~v~~~  353 (427)
T d2gsaa_         283 ------EIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGT---YEYLDQITKRLSDGLLAIAQETGHAACGGQV  353 (427)
T ss_dssp             ------HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTH---HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             ------HHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhhhhH---HhhhhHHHHHHHHHHHHHHhhcCCCcEEccc
Confidence                  676666532  12222223455666666668888776554   45566666666666643    3432221111


Q ss_pred             CCeeEEecCCCCC--------CCH---HHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHH
Q 013217          321 DNHLVLVDLRPMG--------IDG---ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIAD  389 (447)
Q Consensus       321 ~~~~~~v~~~~~~--------~~~---~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~  389 (447)
                      ...+.+.-.....        .+.   ..+...|.++||.+..    +..       .++-++..+|    ++|++++.+
T Consensus       354 ggm~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~~Gv~l~p----~~~-------~~~~~~l~~T----e~dId~~l~  418 (427)
T d2gsaa_         354 SGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAP----SQF-------EAGFTSLAHT----EEDIDATLA  418 (427)
T ss_dssp             TTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCS----STT-------SCEECCTTCC----HHHHHHHHH
T ss_pred             CCeEEEEEeccCCCCHHHhhcccHHHHHHHHHHHHHCCEEECC----CCC-------cceeCCCCCC----HHHHHHHHH
Confidence            1222111111110        111   2355567789998742    211       1111233444    999999999


Q ss_pred             HHHHHHH
Q 013217          390 FIHEGVE  396 (447)
Q Consensus       390 ~i~~~l~  396 (447)
                      +++++++
T Consensus       419 al~~al~  425 (427)
T d2gsaa_         419 AARTVMS  425 (427)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            9999886

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=1.8e-10  Score=111.56  Aligned_cols=327  Identities=15%  Similarity=0.106  Sum_probs=178.4

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc----
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  107 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~----  107 (447)
                      -.|.|.+++...+.. .....++. + ..    ....+.+ +++.+......+.   ....+||++|+..++....    
T Consensus        60 ~~p~i~~Ai~~q~~~-~~~~~~~~-~-~~----~~~~~l~-~~l~~~~~~~~~~---v~f~~sGseA~e~A~k~ar~~~~  128 (429)
T d1s0aa_          60 NHPQLNAAMKSQIDA-MSHVMFGG-I-TH----APAIELC-RKLVAMTPQPLEC---VFLADSGSVAVEVAMKMALQYWQ  128 (429)
T ss_dssp             SCHHHHHHHHHHHHH-CSCCCCSS-E-EC----HHHHHHH-HHHHHHSCTTCCE---EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHh-cCCcccCC-c-cc----hHHHHHH-HHHHhhhccCcce---eeeccccccchhhhhhhhhheee
Confidence            379999999887654 22111111 1 11    1122222 4555565544321   2345899999988775432    


Q ss_pred             ---CCCCEEEEecCCCCcccCC-----Ccccccccc-ccccceeEEEecccCCCCC---CCCHHHHHHHhhhh--CCcEE
Q 013217          108 ---KPHDRIMGLDLPHGGHLSH-----GFMTPKRRV-SGTSIYFESMPYRLDESTG---LVDYDMLEKTAILF--RPKLI  173 (447)
Q Consensus       108 ---~pgd~Vl~~~~~~~~~~~~-----~~~~~~~~~-~~~g~~~~~~~~~~~~~~~---~id~~~l~~~~~~~--~~kli  173 (447)
                         .++.+|+...-.|.|....     +........ ..........+........   .-+.+++++.+...  ++.+|
T Consensus       129 ~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaav  208 (429)
T d1s0aa_         129 AKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAV  208 (429)
T ss_dssp             HHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEE
T ss_pred             cccccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchhhhhhhhhhhhhcCCcccee
Confidence               3446888887654332100     000000000 0000001111211111112   23455555555432  45567


Q ss_pred             EEcCC--CCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccC-C-CCCce
Q 013217          174 IAGAS--AYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLR-G-PRGGM  241 (447)
Q Consensus       174 i~~~~--~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~-G-p~gG~  241 (447)
                      ++.+.  +.++  ..+   +++|+++|++||+++|+|+++ .|+--.+.. . ...+ ..|+++.+  |.+. | ...|.
T Consensus       209 ivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~-tGfGRtG~~~~~~~~~v~PDi~~~g--K~l~gG~~p~~a  285 (429)
T d1s0aa_         209 IIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIA-TGFGRTGKLFACEHAEIAPDILCLG--KALTGGTMTLSA  285 (429)
T ss_dssp             EECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTT-TTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTSSSCCEE
T ss_pred             eecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhcc-ccccccccccccccceecccccccc--cccccccccccc
Confidence            77632  2333  222   689999999999999999997 444222211 0 0011 25999988  9884 3 45688


Q ss_pred             EEeecCCcchhhHHHHhhhcc----CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEee
Q 013217          242 IFFKKDPVLGVELESAINNAV----FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLV  316 (447)
Q Consensus       242 i~~~~~~~~~~~~~~~i~~~~----~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~  316 (447)
                      +++++      ++.+.+....    ..+.+-+.+...+++..+.|+.+.++++   .+++.+..++|.+.|++. ....+
T Consensus       286 v~~~~------~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~~~~---~~~~~~~g~~l~~~L~~l~~~~~v  356 (429)
T d1s0aa_         286 TLTTR------EVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDW---QQQVADIEVQLREQLAPARDAEMV  356 (429)
T ss_dssp             EEECH------HHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHH---HHHHHHHHHHHHHHHGGGGGCTTE
T ss_pred             hhhHH------HHHhccCCCCCcceeecCCCCCCcccchhhhccccccccccc---cchhhHHHHHHHHHHHHhccCCce
Confidence            88887      6777664321    1111122355566666667887766544   566667777888888652 11111


Q ss_pred             eC--CCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217          317 SG--GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  394 (447)
Q Consensus       317 ~~--~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~  394 (447)
                      ..  +.. .+.-+++... .+...+.+.|.++|+.+...          ...||+.++...|    ++|++++.++|+++
T Consensus       357 ~~vrg~G-l~~~~e~~~~-~~~~~~~~~~~~~Gl~~~~~----------g~~i~~~Ppl~it----~~eid~~~~~l~~a  420 (429)
T d1s0aa_         357 ADVRVLG-AIGVVETTHP-VNMAALQKFFVEQGVWIRPF----------GKLIYLMPPYIIL----PQQLQRLTAAVNRA  420 (429)
T ss_dssp             EEEEEET-TEEEEEESSC-BCHHHHHHHHHHTTEECCCB----------TTEEEECCCTTCC----HHHHHHHHHHHHHH
T ss_pred             EEEeecc-cEEEEEecCc-ccHHHHHHHHHHCCcEEEec----------CCEEEEeCCcCCC----HHHHHHHHHHHHHH
Confidence            10  111 2233455432 25677888999999998431          2479999877666    99999999999988


Q ss_pred             HHH
Q 013217          395 VEI  397 (447)
Q Consensus       395 l~~  397 (447)
                      |+.
T Consensus       421 l~e  423 (429)
T d1s0aa_         421 VQD  423 (429)
T ss_dssp             TSS
T ss_pred             HHh
Confidence            764

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=3.3e-10  Score=109.84  Aligned_cols=332  Identities=14%  Similarity=0.013  Sum_probs=171.0

Q ss_pred             CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh--cCC
Q 013217           32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP  109 (447)
Q Consensus        32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al--~~p  109 (447)
                      -.|.|.+++.+.+.+ +....+..   ...+..    ....+++.+++.-+....  ....+||++|+..++...  ...
T Consensus        57 ~~p~i~~ai~~q~~~-~~~~~~~~---~~~~~~----~~la~~l~~~~p~~~~~~--v~f~~sGseA~e~Alk~ar~~t~  126 (425)
T d1sffa_          57 LHPKVVAAVEAQLKK-LSHTCFQV---LAYEPY----LELCEIMNQKVPGDFAKK--TLLVTTGSEAVENAVKIARAATK  126 (425)
T ss_dssp             TCHHHHHHHHHHTTT-CSCCCTTT---EECHHH----HHHHHHHHHHSSCSSCEE--EEEESSHHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHhh-cCCccccc---ccCcHH----HHHHHHHHhhhhhcccce--eeeeccccchhhhHHHHhhhhhc
Confidence            479999999877654 22111111   111111    122356777775332211  233589999998887654  223


Q ss_pred             CCEEEEecCCCCcccCC-----Cccccc-cccccccceeEEEecccCCCCCC-CC-HHHHHHHhh----hhCCcEEEEcC
Q 013217          110 HDRIMGLDLPHGGHLSH-----GFMTPK-RRVSGTSIYFESMPYRLDESTGL-VD-YDMLEKTAI----LFRPKLIIAGA  177 (447)
Q Consensus       110 gd~Vl~~~~~~~~~~~~-----~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~-id-~~~l~~~~~----~~~~klii~~~  177 (447)
                      ..+|+...-.|.|....     +..... .............+++....... .+ ....++...    ..++.+|++.+
T Consensus       127 r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~EP  206 (425)
T d1sffa_         127 RSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEP  206 (425)
T ss_dssp             CCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECS
T ss_pred             ccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHHHhcccccceEEEEecC
Confidence            46788776654443110     000000 00000001111122221111110 11 111111111    12355677763


Q ss_pred             C-CCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccC--CCCCC-cccEEEeCCCcccC-CCCCceEEeecC
Q 013217          178 S-AYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTTTHKSLR-GPRGGMIFFKKD  247 (447)
Q Consensus       178 ~-~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~--~~~~~-~~Di~~~s~~K~l~-Gp~gG~i~~~~~  247 (447)
                      . ...+  ..+   ++.|.++|++||+++|+|+++. |+--.+..  ...++ ..|+++.+  |.|+ |.+.|.+++++ 
T Consensus       207 i~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~t-G~gR~g~~~a~~~~gv~PDi~~~g--K~l~gG~P~~av~~~~-  282 (425)
T d1sffa_         207 VQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQS-GAGRTGTLFAMEQMGVAPDLTTFA--KSIAGGFPLAGVTGRA-  282 (425)
T ss_dssp             BCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTSCCSEEEEC--GGGGTSSCCEEEEEEH-
T ss_pred             ccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccc-cCCCcchhhHHHhcCCCccceecc--cccCCCcceEEEEEcH-
Confidence            2 1222  222   5899999999999999999984 43222211  01111 36999977  9985 44458888888 


Q ss_pred             CcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH----CCcEeeeCCCCCe
Q 013217          248 PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----LGYKLVSGGSDNH  323 (447)
Q Consensus       248 ~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~~~~  323 (447)
                           ++.+.+......++++ .++..+++..++|+.+.+..+   .++..+..+++.+.|++    .++.....+....
T Consensus       283 -----~i~~~~~~~~~~~T~~-gnpl~~aaa~a~L~~i~~~~~---~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~  353 (425)
T d1sffa_         283 -----EVMDAVAPGGLGGTYA-GNPIACVAALEVLKVFEQENL---LQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAM  353 (425)
T ss_dssp             -----HHHTTSCTTSBCCSSS-SCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTE
T ss_pred             -----HHHHhhCCCCCCCCCC-cCHHHHHHHHHHHHHHHHhhh---hhhhhhhhhhhhhhhhhhHhhCCceEEEEccccE
Confidence                 6766655443333332 345566666667887765554   44445555555555543    3331111111122


Q ss_pred             eEEecCCC---CCC-C---HHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217          324 LVLVDLRP---MGI-D---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  396 (447)
Q Consensus       324 ~~~v~~~~---~~~-~---~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~  396 (447)
                       .-+.+..   ... +   ...+.+.|.++||.+....       ...+.||++++...+    ++|++++.++++++++
T Consensus       354 -~~i~f~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~g-------~~~n~i~~~PpL~it----~~eid~~l~~l~~al~  421 (425)
T d1sffa_         354 -IAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCG-------PYYNVLRILVPLTIE----DAQIRQGLEIISQCFD  421 (425)
T ss_dssp             -EEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEES-------TTSCEEEECCCTTCC----HHHHHHHHHHHHHHHH
T ss_pred             -EEEEEeccCccCCccHHHHHHHHHHHHHCCCEEeccC-------CCCCEEEEECCCCCC----HHHHHHHHHHHHHHHH
Confidence             2222211   111 1   2456677888999875321       123579999887666    9999999999999987


Q ss_pred             HH
Q 013217          397 IT  398 (447)
Q Consensus       397 ~~  398 (447)
                      ..
T Consensus       422 ei  423 (425)
T d1sffa_         422 EA  423 (425)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=99.28  E-value=1e-09  Score=106.58  Aligned_cols=329  Identities=14%  Similarity=0.080  Sum_probs=164.2

Q ss_pred             CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh--cCCC
Q 013217           33 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKPH  110 (447)
Q Consensus        33 ~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al--~~pg  110 (447)
                      .|.|.+|+.+.+.+. ...  ...+ ....    ..+.+ +++.+++.-..+.   ....+|||+|+..++...  ....
T Consensus        59 ~p~v~~ai~~q~~~~-~~~--~~~~-~~~~----~~~la-~~L~~~~~~~~~~---v~f~~sGseA~e~Alk~Ar~~t~r  126 (431)
T d1zoda1          59 HPEIVSVIGEYAGKL-DHL--FSEM-LSRP----VVDLA-TRLANITPPGLDR---ALLLSTGAESNEAAIRMAKLVTGK  126 (431)
T ss_dssp             CHHHHHHHHHHHHHC-CCC--CTTC-CCHH----HHHHH-HHHHHHSCTTCCE---EEEESCHHHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHhhc-ccc--cccc-ccHH----HHHHH-HHHHHhCCcccce---eeecccccchHHHHHHHHHHhcCC
Confidence            699999998877652 211  1111 1111    12222 4566666322221   234589999999888753  2345


Q ss_pred             CEEEEecCCCCcccC----CCccccccc--cccccceeEEEecccC--CCC----CCCCH---HHHHHHhhhh---CCcE
Q 013217          111 DRIMGLDLPHGGHLS----HGFMTPKRR--VSGTSIYFESMPYRLD--EST----GLVDY---DMLEKTAILF---RPKL  172 (447)
Q Consensus       111 d~Vl~~~~~~~~~~~----~~~~~~~~~--~~~~g~~~~~~~~~~~--~~~----~~id~---~~l~~~~~~~---~~kl  172 (447)
                      ++|+...-.|.|...    .........  ....+  ...++.+..  +..    ...+.   +.+...+...   +..+
T Consensus       127 ~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAa  204 (431)
T d1zoda1         127 YEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVG--SFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAA  204 (431)
T ss_dssp             CEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTT--EEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEE
T ss_pred             cceeecccccccccchhhcccccccccccCCcccC--ceeeeeecccccccccccchhhhhhHHHHHHHHHHhccccccc
Confidence            778877655443210    000000000  00011  112222111  110    11223   3333333222   3456


Q ss_pred             EEEcCC-CCCC-CC-C---hHHHHHHHHHhCCEEEEehhhhccccccccCC--CCCC-cccEEEeCCCcccC-CCCCceE
Q 013217          173 IIAGAS-AYPR-DF-D---YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPRGGMI  242 (447)
Q Consensus       173 ii~~~~-~~~~-~~-~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~--~~~~-~~Di~~~s~~K~l~-Gp~gG~i  242 (447)
                      |++.+- ...+ .. +   +++|+++|++||+++|+|+++. |+--.+..-  .-.+ ..|+++.+  |.+. |...+.+
T Consensus       205 vi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~t-G~gRtG~~~~~~~~gv~PDi~~~g--K~l~gG~p~~av  281 (431)
T d1zoda1         205 FIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQT-GVGRTGTMFACQRDGVTPDILTLS--KTLGAGLPLAAI  281 (431)
T ss_dssp             EEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSTHHHHTCCCSEEEEC--HHHHTTSSCEEE
T ss_pred             eeeccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccc-cccccccccccccCCCCcchhccc--ccccccccccee
Confidence            676531 1222 11 2   7999999999999999999984 432222110  0001 25999988  9884 3333555


Q ss_pred             EeecCCcchhhHHHHhhhcc-CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHH----HCCcEeee
Q 013217          243 FFKKDPVLGVELESAINNAV-FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLV----ELGYKLVS  317 (447)
Q Consensus       243 ~~~~~~~~~~~~~~~i~~~~-~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~g~~~~~  317 (447)
                      ++++      +..+...... ..+...+.+...+++..+.++.+.++..   .++..+..+++.+.+.    +.++..-.
T Consensus       282 ~~~~------~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~~~~~---~~~~~~~g~~l~~~l~~~~~~~~~i~~v  352 (431)
T d1zoda1         282 VTSA------AIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGL---VARANVMGDRLRRGLLDLMERFDCIGDV  352 (431)
T ss_dssp             EECH------HHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred             eeee------cchhhhhcccccccCCCCCCcchHHHHHHHHHHhhhhhh---hHHHHHHHHHHhhhhhhhhhcCCCeEEE
Confidence            5555      4444443322 1222223355555555556776655444   4444444444544443    33432111


Q ss_pred             CCCCCeeEEecCC---C----CCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHH
Q 013217          318 GGSDNHLVLVDLR---P----MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADF  390 (447)
Q Consensus       318 ~~~~~~~~~v~~~---~----~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~  390 (447)
                      .+....+ -+.+.   .    ...-...+.+.|.+.|+..+....++     ....||+.++...|    ++|++++.++
T Consensus       353 rG~Glm~-~ie~~~~~~~~~~~~~~~~~i~~~~~~~Gl~~~~~~~~~-----~~~~i~l~Ppl~it----~~eid~~~~~  422 (431)
T d1zoda1         353 RGRGLLL-GVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPG-----MGGVFRIAPPLTVS----EDEIDLGLSL  422 (431)
T ss_dssp             EEETTEE-EEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTT-----SCCEEEECCCTTCC----HHHHHHHHHH
T ss_pred             eecceEE-EEEEecCCcccCccHHHHHHHHHHHHHhCcccCeeeecC-----CCCEEEEECCCCCC----HHHHHHHHHH
Confidence            1111221 12221   1    01123557778888998754321221     24579999887776    9999999999


Q ss_pred             HHHHHHH
Q 013217          391 IHEGVEI  397 (447)
Q Consensus       391 i~~~l~~  397 (447)
                      |.++|+.
T Consensus       423 l~~al~~  429 (431)
T d1zoda1         423 LGQAIER  429 (431)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999874

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.20  E-value=1.1e-09  Score=107.05  Aligned_cols=208  Identities=14%  Similarity=0.099  Sum_probs=117.9

Q ss_pred             CHHHHHHHhhh-----hCCcEEEEcCCC-CCC--CCC---hHHHHHHHHHhCCEEEEehhhhcccccccc-C---CCCCC
Q 013217          157 DYDMLEKTAIL-----FRPKLIIAGASA-YPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV-V---ADPFK  221 (447)
Q Consensus       157 d~~~l~~~~~~-----~~~klii~~~~~-~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~---~~~~~  221 (447)
                      +++++++++..     .++.+|++.+.. ..+  ..+   +++|+++|++||+++|+|+++ .|+--.|. .   ...+.
T Consensus       231 ~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~-tG~gRtG~~~~~e~~gi~  309 (461)
T d1ohwa_         231 CLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQ-TGGGSTGKFWAHEHWGLD  309 (461)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTT-TCSSTTSSSSGGGGGCCS
T ss_pred             hHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcceeccccc-cccccccccccccccccc
Confidence            34556655532     234567776322 223  223   689999999999999999997 44322221 1   11111


Q ss_pred             -cccEEEeCCCcccCCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHH
Q 013217          222 -YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN  300 (447)
Q Consensus       222 -~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~  300 (447)
                       ..|+++.+  |.+.|   |++....      .+. ........+++++ +....++..++++.+.+++   ..+++.+.
T Consensus       310 ~~PDiv~~g--K~l~~---g~~~~~~------~~~-~~~~~~~~~T~~g-~p~~~aaa~a~l~~i~~~~---l~~~~~~~  373 (461)
T d1ohwa_         310 DPADVMTFS--KKMMT---GGFFHKE------EFR-PNAPYRIFNTWLG-DPSKNLLLAEVINIIKRED---LLSNAAHA  373 (461)
T ss_dssp             SCCSEEEEC--GGGSS---EEEEECG------GGS-CSSTTSSCCSCSS-CHHHHHHHHHHHHHHHHTT---HHHHHHHH
T ss_pred             cCchhhhhh--hcccc---ccccccc------ccc-ccccccccccccc-ccccchhhcccchhhhhhh---HHHHHHHH
Confidence             26899777  87643   4444433      221 1111112222222 3445555555777766444   35566666


Q ss_pred             HHHHHHHHHHC-----C-cEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCcc
Q 013217          301 CRALASRLVEL-----G-YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAM  374 (447)
Q Consensus       301 ~~~l~~~L~~~-----g-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~  374 (447)
                      .++|.+.|++.     . +.-+.+ . ..+.-+++.... ...++.+.|.++|+.+...         ....||+.++..
T Consensus       374 g~~l~~~l~~l~~~~~~~i~~vrG-~-Gl~~~ie~~~~~-~~~~i~~~~~~~Gll~~~~---------~~~~ir~~PpL~  441 (461)
T d1ohwa_         374 GKVLLTGLLDLQARYPQFISRVRG-R-GTFCSFDTPDES-IRNKLISIARNKGVMLGGC---------GDKSIRFRPTLV  441 (461)
T ss_dssp             HHHHHHHHHHHHHHCTTTCEEEEE-E-TTEEEEECSSHH-HHHHHHHHHHHTTEECEEE---------TTTEEECCCCTT
T ss_pred             HHHHHHHHHHHHhhCCCceEEeee-e-eEEEEEEcCCHH-HHHHHHHHHHHCCeEEeeC---------CCCEEEEeCCcC
Confidence            77777777652     1 211111 1 112334554322 2356778888899988531         134799987766


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHH
Q 013217          375 TTRGFSEKEFVAIADFIHEGVEI  397 (447)
Q Consensus       375 ~~~g~~~~di~~l~~~i~~~l~~  397 (447)
                      .|    ++|++.+.++|.++|.+
T Consensus       442 it----~~eid~~~~~l~~~l~e  460 (461)
T d1ohwa_         442 FR----DHHAHLFLNIFSDILAD  460 (461)
T ss_dssp             CC----HHHHHHHHHHHHHHHHT
T ss_pred             CC----HHHHHHHHHHHHHHHhc
Confidence            55    99999999999999874