Citrus Sinensis ID: 013280

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440------
MASSVASKTFLAAPRTDGSLGSLLPDLRRQLPSPNVQILIRSRTPKKLQVKAAGSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQGTMKLPELEPAPANFQM
cccccccccccccccccccccccccccccccccccEEEEEccccccccEEEcccccccccEEEEccccccccccEEEEccccccccccHHHHHHHHcccccccccccccccccccccccEEEEEccccccccccccEEEEEEccccccccHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEcccEEccccccccccccHHHHHccccccccHHHHHHHHHHHHHHHHcccccccEEEEEEEEccccccccccccccHHHHHHHccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccccccEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccc
cccccccccccccccccccccccccccccccccccEEEEcccccccEEEEEEccccccEEEEEEEcccccccEEEEEEccccccccccHHHHHHHHccEEEEEccccccccccccccccEEEEEEccEccccccccEEEEEEccccccccHHHHHHHcccccccHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEccccEccccccccccccHHHHHccccccccHHHHHHHHHHHHHHHHccccEEEEEEEEEEccccccccccHcHHHHHHHHHHHcccccccEEEccccHEEEEccccccccccccccccEEEEEcccccEEcccccccEEEEEEEEcccccEcccccEEcccccEEEEEEcccccccccHcHcHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccc
massvasktflaaprtdgslgsllpdlrrqlpspnvqilirsrtpkklQVKAAGSAFGTYFRVttfgeshgggvgciidgcppriplseadmqvdLDRRIvvsrrpgqsrittprketdtckiysgvsegvttgtpihvfvpntdqrghdysemsvayrpshadatydmkygvrsvqgggrssaretigrvapGAVAKKILKQFAGTEILAYVSQAhnvvlpedvvdhemltLDQVesnivrcpdpeyAEKMIAAIDAVRVRGDSVGGVVTCIVrncprglgspvFDKLEAELAKAMMslpatkgfevgsgfagtfltgsehndefytdefgnirtrtnrsggiqggisngeIINMRiafkptstigrkqntvtreKKETELIargrhdpcvvpraVPMVEAMVALVLMDQLMAQHAQchlfpinpdlqgtmklpelepapanfqm
massvasktflaaprtdgslgsllpdlrrqlpspnvqilirsrtpkklqVKAAGSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDrrivvsrrpgqsrittprketdtckiysgvsegvttgtpiHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVrncprglgspVFDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFgnirtrtnrsggiqggisngeiINMRIafkptstigrkqntvtrekketeliargrhdpcvvPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQGTMKLPELEPAPANFQM
MASSVASKTFLAAPRTDGSLGSLLPDLRRQLPSPNVQILIRSRTPKKLQVKAAGSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYgvrsvqgggrssARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAvrvrgdsvggvvTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQGTMKLPELEPAPANFQM
************************************QILIRSRTPKKLQVKAAGSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVV*****************TCKIYSGVSEGVTTGTPIHVFVPNT*********************TYDMKYGV*************TIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTST****************LIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPD*******************
******************************************************SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQS*ITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDL******************
MASSVASKTFLAAPRTDGSLGSLLPDLRRQLPSPNVQILIRSRTPKKLQVKAAGSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVR**********RETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQGTMKLPELEPAPANFQM
******************************LPSPNVQILIRSRTPKKLQVKAAGSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITT*RKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQGTMKLPEL*********
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
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MASSVASKTFLAAPRTDGSLGSLLPDLRRQLPSPNVQILIRSRTPKKLQVKAAGSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQGTMKLPELEPAPANFQM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query446 2.2.26 [Sep-21-2011]
P57720436 Chorismate synthase, chlo yes no 0.968 0.990 0.805 0.0
P27793447 Chorismate synthase, chlo N/A no 0.948 0.946 0.798 0.0
Q42884440 Chorismate synthase 1, ch N/A no 0.946 0.959 0.785 0.0
Q42885431 Chorismate synthase 2, ch N/A no 0.941 0.974 0.780 0.0
B7JVZ9362 Chorismate synthase OS=Cy yes no 0.809 0.997 0.693 1e-144
B7KIU0362 Chorismate synthase OS=Cy yes no 0.802 0.988 0.680 1e-142
Q8DLM1363 Chorismate synthase OS=Th yes no 0.807 0.991 0.682 1e-141
B8HNK4362 Chorismate synthase OS=Cy yes no 0.807 0.994 0.682 1e-140
Q31RS5362 Chorismate synthase OS=Sy yes no 0.809 0.997 0.677 1e-140
P23353362 Chorismate synthase OS=Sy N/A no 0.802 0.988 0.693 1e-140
>sp|P57720|AROC_ARATH Chorismate synthase, chloroplastic OS=Arabidopsis thaliana GN=EMB1144 PE=2 SV=2 Back     alignment and function desciption
 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/442 (80%), Positives = 398/442 (90%), Gaps = 10/442 (2%)

Query: 2   ASSVASKTFLAAPRTDGSLGSL-LPDLRRQLPSPNVQILIRSRTPKKLQVKAAGSAFGTY 60
           +SS+ SK+ L + +    LGS  LP   R+L SP VQI +R++T K  Q++A GS++GT+
Sbjct: 3   SSSLTSKSILGSTK----LGSSSLPSELRRLSSPAVQISLRTQTRKNFQIQATGSSYGTH 58

Query: 61  FRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTPRKETDT 120
           FRV+TFGESHGGGVGCIIDGCPPRIPL+E+D+Q DLDRR     RPGQSRITTPRKETDT
Sbjct: 59  FRVSTFGESHGGGVGCIIDGCPPRIPLTESDLQFDLDRR-----RPGQSRITTPRKETDT 113

Query: 121 CKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGG 180
           C+I SGVSEG+TTGTPIHVFVPNTDQRG DYSEMSVAYRPSHADATYDMKYGVRSVQGGG
Sbjct: 114 CRISSGVSEGMTTGTPIHVFVPNTDQRGLDYSEMSVAYRPSHADATYDMKYGVRSVQGGG 173

Query: 181 RSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNI 240
           RSSARETIGRVAPGA+AKKILKQFAGTEILAYVSQ H+VVLPE++VDHE LTL+Q+E+NI
Sbjct: 174 RSSARETIGRVAPGALAKKILKQFAGTEILAYVSQVHHVVLPEELVDHENLTLEQIENNI 233

Query: 241 VRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSL 300
           VRCP+PEYAEKMIAAIDAVR +G+SVGGVVTCIVRN PRGLG+PVFDKLEAELAKA MSL
Sbjct: 234 VRCPNPEYAEKMIAAIDAVRTKGNSVGGVVTCIVRNAPRGLGTPVFDKLEAELAKACMSL 293

Query: 301 PATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAF 360
           PATKGFE GSGFAGTFLTG EHNDEFYTDE G IRTRTNRSGGIQGGISNGEIINMR+AF
Sbjct: 294 PATKGFEFGSGFAGTFLTGLEHNDEFYTDENGRIRTRTNRSGGIQGGISNGEIINMRVAF 353

Query: 361 KPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCH 420
           KPTSTIGRKQNTVTR+K ETE+IARGRHDPCVVPRAVPMVEAMVALVL+DQLMAQ+AQCH
Sbjct: 354 KPTSTIGRKQNTVTRDKVETEMIARGRHDPCVVPRAVPMVEAMVALVLVDQLMAQYAQCH 413

Query: 421 LFPINPDLQGTMKLPELEPAPA 442
           LFPINP+LQ  +++ + + A A
Sbjct: 414 LFPINPELQEPLQIEQPQNATA 435
Catalyzes the last common step of the biosynthesis of aromatic amino acids, produced via the shikimic acid pathway.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 5
>sp|P27793|AROC_CORSE Chorismate synthase, chloroplastic OS=Corydalis sempervirens PE=1 SV=1 Back     alignment and function description
>sp|Q42884|AROC1_SOLLC Chorismate synthase 1, chloroplastic OS=Solanum lycopersicum GN=CS1 PE=2 SV=1 Back     alignment and function description
>sp|Q42885|AROC2_SOLLC Chorismate synthase 2, chloroplastic OS=Solanum lycopersicum GN=CS2 PE=2 SV=1 Back     alignment and function description
>sp|B7JVZ9|AROC_CYAP8 Chorismate synthase OS=Cyanothece sp. (strain PCC 8801) GN=aroC PE=3 SV=1 Back     alignment and function description
>sp|B7KIU0|AROC_CYAP7 Chorismate synthase OS=Cyanothece sp. (strain PCC 7424) GN=aroC PE=3 SV=1 Back     alignment and function description
>sp|Q8DLM1|AROC_THEEB Chorismate synthase OS=Thermosynechococcus elongatus (strain BP-1) GN=aroC PE=3 SV=1 Back     alignment and function description
>sp|B8HNK4|AROC_CYAP4 Chorismate synthase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=aroC PE=3 SV=1 Back     alignment and function description
>sp|Q31RS5|AROC_SYNE7 Chorismate synthase OS=Synechococcus elongatus (strain PCC 7942) GN=aroC PE=3 SV=1 Back     alignment and function description
>sp|P23353|AROC_SYNY3 Chorismate synthase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=aroC PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query446
224109756437 chorismate synthase [Populus trichocarpa 0.973 0.993 0.832 0.0
255577383435 Chorismate synthase, chloroplast precurs 0.952 0.977 0.830 0.0
224100795438 chorismate synthase [Populus trichocarpa 0.975 0.993 0.823 0.0
297852508435 EMB1144 [Arabidopsis lyrata subsp. lyrat 0.973 0.997 0.814 0.0
18402389436 chorismate synthase [Arabidopsis thalian 0.968 0.990 0.805 0.0
356576217435 PREDICTED: chorismate synthase, chloropl 0.970 0.995 0.805 0.0
12321114435 chorismate synthase, putative [Arabidops 0.966 0.990 0.803 0.0
76782200434 putative chorismate synthase [Fagus sylv 0.968 0.995 0.810 0.0
449464390439 PREDICTED: chorismate synthase, chloropl 0.948 0.963 0.802 0.0
225449068436 PREDICTED: chorismate synthase, chloropl 0.957 0.979 0.798 0.0
>gi|224109756|ref|XP_002315301.1| chorismate synthase [Populus trichocarpa] gi|118487444|gb|ABK95550.1| unknown [Populus trichocarpa] gi|222864341|gb|EEF01472.1| chorismate synthase [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/442 (83%), Positives = 395/442 (89%), Gaps = 8/442 (1%)

Query: 2   ASSVASKTFLAAPRTDGSLGSLLPDLRRQLPSPNVQILIRSRTPKKLQVKAAGSAFGTYF 61
           +S++ SK+FL + R DG+  S+  DLR+ L   +VQI  RSR PKKLQ+ AAGS FGT F
Sbjct: 3   SSTLTSKSFLGSSRIDGA--SISSDLRK-LSISSVQISFRSRIPKKLQINAAGSTFGTNF 59

Query: 62  RVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTPRKETDTC 121
           RVTTFGESHGGGVGCIIDGCPPRIPLSEADMQ DLDRR     RPGQSRITTPRKETDTC
Sbjct: 60  RVTTFGESHGGGVGCIIDGCPPRIPLSEADMQFDLDRR-----RPGQSRITTPRKETDTC 114

Query: 122 KIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGR 181
           KI SGVSEG+TTGTPIHVFVPNTDQRG DYSEMSVAYRPSHADATYDMKYGVRSVQGGGR
Sbjct: 115 KISSGVSEGLTTGTPIHVFVPNTDQRGLDYSEMSVAYRPSHADATYDMKYGVRSVQGGGR 174

Query: 182 SSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIV 241
           SSARETIGRVA G VAKKILK +AGTEILAYVSQ H VVLPE VVDH+ LTLDQ+ESNIV
Sbjct: 175 SSARETIGRVAAGGVAKKILKLYAGTEILAYVSQVHKVVLPEGVVDHDSLTLDQMESNIV 234

Query: 242 RCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLP 301
           RCPDPEYAEKMIAAIDAVRV+GDSVGGVVTCIVRN PRGLGSPVFDKLEAELAKA MSLP
Sbjct: 235 RCPDPEYAEKMIAAIDAVRVKGDSVGGVVTCIVRNAPRGLGSPVFDKLEAELAKAAMSLP 294

Query: 302 ATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFK 361
           ATKGFE GSGFAGT LTGSEHNDEFYTD+ G IRTRTNRSGGIQGGISNGEIINMRIAFK
Sbjct: 295 ATKGFEFGSGFAGTLLTGSEHNDEFYTDKHGRIRTRTNRSGGIQGGISNGEIINMRIAFK 354

Query: 362 PTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHL 421
           PTSTIG+KQ+TVTR+KKET+LIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQ++QC+L
Sbjct: 355 PTSTIGKKQHTVTRDKKETDLIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQYSQCYL 414

Query: 422 FPINPDLQGTMKLPELEPAPAN 443
            PIN +LQ  + +P LE A A+
Sbjct: 415 LPINSELQEPLIMPRLEAANAS 436

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255577383|ref|XP_002529571.1| Chorismate synthase, chloroplast precursor, putative [Ricinus communis] gi|223530947|gb|EEF32805.1| Chorismate synthase, chloroplast precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224100795|ref|XP_002312018.1| chorismate synthase [Populus trichocarpa] gi|222851838|gb|EEE89385.1| chorismate synthase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297852508|ref|XP_002894135.1| EMB1144 [Arabidopsis lyrata subsp. lyrata] gi|297339977|gb|EFH70394.1| EMB1144 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18402389|ref|NP_564534.1| chorismate synthase [Arabidopsis thaliana] gi|83300489|sp|P57720.2|AROC_ARATH RecName: Full=Chorismate synthase, chloroplastic; AltName: Full=5-enolpyruvylshikimate-3-phosphate phospholyase; AltName: Full=Protein EMBRYO DEFECTIVE 1144; Flags: Precursor gi|15982824|gb|AAL09759.1| At1g48850/T24P22_3 [Arabidopsis thaliana] gi|53749180|gb|AAU90075.1| At1g48850 [Arabidopsis thaliana] gi|110742465|dbj|BAE99151.1| hypothetical protein [Arabidopsis thaliana] gi|332194235|gb|AEE32356.1| chorismate synthase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356576217|ref|XP_003556230.1| PREDICTED: chorismate synthase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|12321114|gb|AAG50662.1|AC084242_6 chorismate synthase, putative [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|76782200|gb|ABA54870.1| putative chorismate synthase [Fagus sylvatica] Back     alignment and taxonomy information
>gi|449464390|ref|XP_004149912.1| PREDICTED: chorismate synthase, chloroplastic-like [Cucumis sativus] gi|449505691|ref|XP_004162542.1| PREDICTED: chorismate synthase, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225449068|ref|XP_002275232.1| PREDICTED: chorismate synthase, chloroplastic [Vitis vinifera] gi|296086029|emb|CBI31470.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query446
TAIR|locus:2028549436 EMB1144 "embryo defective 1144 0.970 0.993 0.759 9.6e-176
CGD|CAL0002708413 ARO2 [Candida albicans (taxid: 0.804 0.869 0.524 1e-93
POMBASE|SPCC1223.14395 SPCC1223.14 "chorismate syntha 0.446 0.503 0.49 5.6e-90
SGD|S000003116376 ARO2 "Bifunctional chorismate 0.804 0.954 0.502 8.3e-90
UNIPROTKB|P12008361 aroC "AroC" [Escherichia coli 0.782 0.966 0.478 1.2e-79
UNIPROTKB|Q9KQ85361 aroC "Chorismate synthase" [Vi 0.782 0.966 0.472 1e-77
TIGR_CMR|VC_2116361 VC_2116 "chorismate synthase" 0.782 0.966 0.472 1e-77
TIGR_CMR|CPS_3150373 CPS_3150 "chorismate synthase" 0.820 0.981 0.452 6.3e-76
UNIPROTKB|G4N9G9424 MGG_03281 "Chorismate synthase 0.728 0.766 0.488 3.2e-72
TIGR_CMR|SPO_0267366 SPO_0267 "chorismate synthase" 0.791 0.964 0.421 4.8e-71
TAIR|locus:2028549 EMB1144 "embryo defective 1144" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1707 (606.0 bits), Expect = 9.6e-176, P = 9.6e-176
 Identities = 335/441 (75%), Positives = 375/441 (85%)

Query:     2 ASSVASKTFLAAPRTDGSLGSLLPDLRRQLPSPNVQILIRSRTPKKLQVKAAGSAFGTYF 61
             +SS+ SK+ L + +  GS  S LP   R+L SP VQI +R++T K  Q++A GS++GT+F
Sbjct:     3 SSSLTSKSILGSTKL-GS--SSLPSELRRLSSPAVQISLRTQTRKNFQIQATGSSYGTHF 59

Query:    62 RVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTPRKETDTC 121
             RV+TFGESHGGGVGCIIDGCPPRIPL+E+D+Q DLDRR     RPGQSRITTPRKETDTC
Sbjct:    60 RVSTFGESHGGGVGCIIDGCPPRIPLTESDLQFDLDRR-----RPGQSRITTPRKETDTC 114

Query:   122 KIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXX 181
             +I SGVSEG+TTGTPIHVFVPNTDQRG DYSEMSVAYRPSHADATYDMKY          
Sbjct:   115 RISSGVSEGMTTGTPIHVFVPNTDQRGLDYSEMSVAYRPSHADATYDMKYGVRSVQGGGR 174

Query:   182 XXARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIV 241
               ARETIGRVAPGA+AKKILKQFAGTEILAYVSQ H+VVLPE++VDHE LTL+Q+E+NIV
Sbjct:   175 SSARETIGRVAPGALAKKILKQFAGTEILAYVSQVHHVVLPEELVDHENLTLEQIENNIV 234

Query:   242 RCPDPEYAEKMIAAIDAXXXXXXXXXXXXTCIVRNCPRGLGSPVFDKLEAELAKAMMSLP 301
             RCP+PEYAEKMIAAIDA            TCIVRN PRGLG+PVFDKLEAELAKA MSLP
Sbjct:   235 RCPNPEYAEKMIAAIDAVRTKGNSVGGVVTCIVRNAPRGLGTPVFDKLEAELAKACMSLP 294

Query:   302 ATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFK 361
             ATKGFE GSGFAGTFLTG EHNDEFYTDE G IRTRTNRSGGIQGGISNGEIINMR+AFK
Sbjct:   295 ATKGFEFGSGFAGTFLTGLEHNDEFYTDENGRIRTRTNRSGGIQGGISNGEIINMRVAFK 354

Query:   362 PTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHL 421
             PTSTIGRKQNTVTR+K ETE+IARGRHDPCVVPRAVPMVEAMVALVL+DQLMAQ+AQCHL
Sbjct:   355 PTSTIGRKQNTVTRDKVETEMIARGRHDPCVVPRAVPMVEAMVALVLVDQLMAQYAQCHL 414

Query:   422 FPINPDLQGTMKLPELEPAPA 442
             FPINP+LQ  +++ + + A A
Sbjct:   415 FPINPELQEPLQIEQPQNATA 435
GO:0004107 "chorismate synthase activity" evidence=IEA
GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IEA;TAS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0005730 "nucleolus" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0006865 "amino acid transport" evidence=RCA
GO:0009611 "response to wounding" evidence=RCA
GO:0009805 "coumarin biosynthetic process" evidence=RCA
GO:0009536 "plastid" evidence=IDA
CGD|CAL0002708 ARO2 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
POMBASE|SPCC1223.14 SPCC1223.14 "chorismate synthase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
SGD|S000003116 ARO2 "Bifunctional chorismate synthase and flavin reductase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|P12008 aroC "AroC" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KQ85 aroC "Chorismate synthase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2116 VC_2116 "chorismate synthase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_3150 CPS_3150 "chorismate synthase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|G4N9G9 MGG_03281 "Chorismate synthase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0267 SPO_0267 "chorismate synthase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q3AMV2AROC_SYNSC4, ., 2, ., 3, ., 50.60810.81160.9945yesno
P28777AROC_YEAST4, ., 2, ., 3, ., 50.53760.80490.9547yesno
Q31RS5AROC_SYNE74, ., 2, ., 3, ., 50.67750.80940.9972yesno
A5GIL9AROC_SYNPW4, ., 2, ., 3, ., 50.60430.80940.9972yesno
Q7U9F0AROC_SYNPX4, ., 2, ., 3, ., 50.61350.80940.9944yesno
P27793AROC_CORSE4, ., 2, ., 3, ., 50.79810.94840.9463N/Ano
Q8F9N4AROC_LEPIN4, ., 2, ., 3, ., 50.52600.82730.9710yesno
Q31CV7AROC_PROM94, ., 2, ., 3, ., 50.59620.80710.9863yesno
B7JVZ9AROC_CYAP84, ., 2, ., 3, ., 50.69370.80940.9972yesno
Q7V4Y9AROC_PROMM4, ., 2, ., 3, ., 50.57450.80940.9972yesno
Q04XD2AROC_LEPBL4, ., 2, ., 3, ., 50.52080.82730.9710yesno
Q110N5AROC_TRIEI4, ., 2, ., 3, ., 50.67200.80940.9756yesno
B2J1W7AROC_NOSP74, ., 2, ., 3, ., 50.66120.80940.9972yesno
A2BP22AROC_PROMS4, ., 2, ., 3, ., 50.60160.80710.9863yesno
Q7V364AROC_PROMP4, ., 2, ., 3, ., 50.59180.80940.9917yesno
B1ZUM3AROC_OPITP4, ., 2, ., 3, ., 50.58150.80490.9889yesno
Q42885AROC2_SOLLC4, ., 2, ., 3, ., 50.78080.94170.9744N/Ano
Q42884AROC1_SOLLC4, ., 2, ., 3, ., 50.78520.94610.9590N/Ano
Q2JLD4AROC_SYNJB4, ., 2, ., 3, ., 50.66570.80490.9497yesno
B3DXL0AROC_METI44, ., 2, ., 3, ., 50.57690.79370.9672yesno
B7KIU0AROC_CYAP74, ., 2, ., 3, ., 50.68030.80260.9889yesno
Q8YYP9AROC_NOSS14, ., 2, ., 3, ., 50.66390.80940.9972yesno
B8HNK4AROC_CYAP44, ., 2, ., 3, ., 50.68290.80710.9944yesno
A2CCA2AROC_PROM34, ., 2, ., 3, ., 50.57450.80940.9972yesno
Q04W40AROC_LEPBJ4, ., 2, ., 3, ., 50.52080.82730.9710yesno
Q3MFM3AROC_ANAVT4, ., 2, ., 3, ., 50.66390.80940.9972yesno
Q3AUR6AROC_SYNS94, ., 2, ., 3, ., 50.59180.81160.9945yesno
P46894AROC_PROMA4, ., 2, ., 3, ., 50.57990.80940.9972yesno
Q5N2I0AROC_SYNP64, ., 2, ., 3, ., 50.67470.80940.9972yesno
O74413AROC_SCHPO4, ., 2, ., 3, ., 50.50870.82950.9367yesno
A8G2N2AROC_PROM24, ., 2, ., 3, ., 50.59070.80710.9863yesno
Q2JXD0AROC_SYNJA4, ., 2, ., 3, ., 50.64450.83180.9814yesno
Q72W01AROC_LEPIC4, ., 2, ., 3, ., 50.52600.82730.9710yesno
A5GW34AROC_SYNR34, ., 2, ., 3, ., 50.61200.80260.9944yesno
B1XIM6AROC_SYNP24, ., 2, ., 3, ., 50.65850.81160.9945yesno
B0C2W2AROC_ACAM14, ., 2, ., 3, ., 50.67200.80940.9917yesno
A2BUK4AROC_PROM54, ., 2, ., 3, ., 50.58800.80710.9890yesno
Q8DLM1AROC_THEEB4, ., 2, ., 3, ., 50.68200.80710.9917yesno
Q46HE7AROC_PROMT4, ., 2, ., 3, ., 50.58460.80260.9916yesno
Q6AIP3AROC_DESPS4, ., 2, ., 3, ., 50.53530.80710.9944yesno
B0JWQ2AROC_MICAN4, ., 2, ., 3, ., 50.64670.80710.9836yesno
A2C058AROC_PROM14, ., 2, ., 3, ., 50.59280.80260.9916yesno
P23353AROC_SYNY34, ., 2, ., 3, ., 50.69390.80260.9889N/Ano
Q0ID82AROC_SYNS34, ., 2, ., 3, ., 50.62050.80940.9972yesno
A9BDJ2AROC_PROM44, ., 2, ., 3, ., 50.59890.80940.9944yesno
B2UNJ5AROC_AKKM84, ., 2, ., 3, ., 50.58080.79590.9833yesno
A3PAU4AROC_PROM04, ., 2, ., 3, ., 50.59890.80710.9863yesno
B1WRV7AROC_CYAA54, ., 2, ., 3, ., 50.68560.80940.9944yesno
Q11Y57AROC_CYTH34, ., 2, ., 3, ., 50.54540.79370.9833yesno
P57720AROC_ARATH4, ., 2, ., 3, ., 50.80540.96860.9908yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.998
3rd Layer4.2.3.50.994

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
CS2
RecName- Full=Chorismate synthase; EC=4.2.3.5; (437 aa)
(Populus trichocarpa)
Predicted Functional Partners:
EPSPS
3-phosphoshikimate 1-carboxyvinyltransferase (EC-2.5.1.19) (519 aa)
• •• •• 0.999
DHQS6
SubName- Full=Putative uncharacterized protein; (375 aa)
• ••  • 0.984
SK
Shikimate kinase (175 aa)
• •  •• 0.980
ASB2
anthranilate synthase, beta subunit, ASB2 (EC-4.1.3.27) (240 aa)
• •  •• 0.958
CM1|CM
chorismate mutase (EC-5.4.99.5) (258 aa)
     •• 0.949
CM2
chorismate mutase (EC-5.4.99.5) (255 aa)
     •• 0.949
CM1
chorismate mutase (EC-5.4.99.5) (257 aa)
     •• 0.948
ASB1
anthranilate synthase, beta subunit, ASB1 (EC-4.1.3.27) (276 aa)
• •  •• 0.948
ASA2
anthranilate synthase, alpha subunit 2 (EC-4.1.3.27) (530 aa)
•  • •• 0.944
ASA1
anthranilate synthase, alpha subunit 1 (EC-4.1.3.27) (532 aa)
•  • •• 0.943

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query446
PLN02754413 PLN02754, PLN02754, chorismate synthase 0.0
cd07304344 cd07304, Chorismate_synthase, Chorismase synthase, 0.0
pfam01264346 pfam01264, Chorismate_synt, Chorismate synthase 0.0
PRK05382359 PRK05382, PRK05382, chorismate synthase; Validated 0.0
COG0082369 COG0082, AroC, Chorismate synthase [Amino acid tra 0.0
TIGR00033351 TIGR00033, aroC, chorismate synthase 1e-160
PRK12463390 PRK12463, PRK12463, chorismate synthase; Reviewed 6e-52
>gnl|CDD|215402 PLN02754, PLN02754, chorismate synthase Back     alignment and domain information 
 Score =  803 bits (2075), Expect = 0.0
 Identities = 351/412 (85%), Positives = 373/412 (90%), Gaps = 5/412 (1%)

Query: 29  RQLPSPNVQILIRSRTPKKLQVKAAGSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLS 88
           R+L S +VQI +RSRT K LQ++AAGS FGTYFRVTTFGESHGGGVGC+IDGCPPRIPL+
Sbjct: 1   RRLSSASVQISLRSRTRKNLQIQAAGSTFGTYFRVTTFGESHGGGVGCVIDGCPPRIPLT 60

Query: 89  EADMQVDLDRRIVVSRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRG 148
           E DMQ DLDRR     RPGQSRITTPRKETDTC+I SGVSEG+T GTPI VFVPNTDQRG
Sbjct: 61  EEDMQFDLDRR-----RPGQSRITTPRKETDTCEILSGVSEGMTLGTPIAVFVPNTDQRG 115

Query: 149 HDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTE 208
            DYSEMSVAYRPSHADATYD KYGVR+VQGGGRSSARETIGRVA GAVAKKILKQFAGTE
Sbjct: 116 QDYSEMSVAYRPSHADATYDFKYGVRAVQGGGRSSARETIGRVAAGAVAKKILKQFAGTE 175

Query: 209 ILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGG 268
           ILAYVSQ H+VVLPED+VDHE LTL+Q+ESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGG
Sbjct: 176 ILAYVSQVHDVVLPEDLVDHETLTLEQIESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGG 235

Query: 269 VVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYT 328
           VVTCIVRN PRGLGSPVFDKLEAELAKAMMSLPATKGFE+GSGFAGT LTGSEHNDEFY 
Sbjct: 236 VVTCIVRNVPRGLGSPVFDKLEAELAKAMMSLPATKGFEIGSGFAGTLLTGSEHNDEFYM 295

Query: 329 DEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRH 388
           DE G IRTRTNRSGGIQGGISNGEII MRIAFKPTSTIG+KQNTVTR+ +ETEL ARGRH
Sbjct: 296 DEHGRIRTRTNRSGGIQGGISNGEIIVMRIAFKPTSTIGKKQNTVTRDGQETELRARGRH 355

Query: 389 DPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQGTMKLPELEPA 440
           DPCVVPRAVPMVEAMVALVL+DQLMAQ+AQC LFPINP LQ  + +     A
Sbjct: 356 DPCVVPRAVPMVEAMVALVLVDQLMAQYAQCELFPINPVLQEPLGIASPAAA 407

Length = 413
>gnl|CDD|143612 cd07304, Chorismate_synthase, Chorismase synthase, the enzyme catalyzing the final step of the shikimate pathway Back     alignment and domain information
>gnl|CDD|216398 pfam01264, Chorismate_synt, Chorismate synthase Back     alignment and domain information
>gnl|CDD|235438 PRK05382, PRK05382, chorismate synthase; Validated Back     alignment and domain information
>gnl|CDD|223160 COG0082, AroC, Chorismate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|232792 TIGR00033, aroC, chorismate synthase Back     alignment and domain information
>gnl|CDD|171518 PRK12463, PRK12463, chorismate synthase; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 446
PLN02754413 chorismate synthase 100.0
COG0082369 AroC Chorismate synthase [Amino acid transport and 100.0
PF01264346 Chorismate_synt: Chorismate synthase; InterPro: IP 100.0
TIGR00033351 aroC chorismate synthase. Homotetramer (noted in E 100.0
PRK12463390 chorismate synthase; Reviewed 100.0
PRK05382359 chorismate synthase; Validated 100.0
cd07304344 Chorismate_synthase Chorismase synthase, the enzym 100.0
KOG4492368 consensus Chorismate synthase [Amino acid transpor 100.0
KOG4492368 consensus Chorismate synthase [Amino acid transpor 99.57
cd07304344 Chorismate_synthase Chorismase synthase, the enzym 81.69
>PLN02754 chorismate synthase Back     alignment and domain information 
Probab=100.00  E-value=5.6e-155  Score=1177.95  Aligned_cols=403  Identities=87%  Similarity=1.314  Sum_probs=380.5

Q ss_pred             ccCCCCceeEeecccCcchhhcccccccccCceEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhcccccCcCCCCC
Q 013280           29 RQLPSPNVQILIRSRTPKKLQVKAAGSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQ  108 (446)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~m~ntfG~~~r~ttfGESHG~aig~VIDG~PaGl~i~~edIq~eL~R~~~~~RrpG~  108 (446)
                      |.+++.+|+++++.+.+++++++|++|+||++|||||||||||++||||||||||||+||+|+||+||+|     |||||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~ntfG~~~r~ttfGESHG~aig~VIdG~PaGl~i~~e~I~~~L~R-----RrpG~   75 (413)
T PLN02754          1 RRLSSASVQISLRSRTRKNLQIQAAGSTFGTYFRVTTFGESHGGGVGCVIDGCPPRIPLTEEDMQFDLDR-----RRPGQ   75 (413)
T ss_pred             CCccccccceecccccccceeeecccCccccceEEEEEecCCCCeeEEEEcccCCCCEeCHHHHHHHHhc-----cCCCC
Confidence            4577889999999999999999999999999999999999999999999999999999999999999999     99999


Q ss_pred             CCCCCCCCCCCeEEEEecccCCcccCCcEEEEEeCCCCCCCCccccccCCCCCcccccccccccCCCCCCCchhhHHHHH
Q 013280          109 SRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETI  188 (446)
Q Consensus       109 ~r~~t~R~E~D~veIlSGv~~G~TtGtPIa~~I~N~D~~s~DY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa  188 (446)
                      ++++|||+|.|+|+||||||+|+|||+||+++|+|+||+||||+++++.||||||||||++|||+|||||||||||||||
T Consensus        76 ~~~~t~R~E~D~veIlSGv~~G~TtGtPIa~~I~N~D~~s~dY~~~~~~pRPGHAD~t~~~KYg~rd~rGGgRsSaReTa  155 (413)
T PLN02754         76 SRITTPRKETDTCEILSGVSEGMTLGTPIAVFVPNTDQRGQDYSEMSVAYRPSHADATYDFKYGVRAVQGGGRSSARETI  155 (413)
T ss_pred             CCCCcCCCCCCceEEeecccCCCcCCCCeEEEEEcCCCCCCChHHhcCCCCCCCcchhHHHhcCCcccCCccccHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCeEEEEEEEEeeceecCCCCCCcccccHhhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCcccc
Q 013280          189 GRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGG  268 (446)
Q Consensus       189 ~rVaAGaIAk~~L~~~~GI~I~s~V~~IG~i~~~~~~~~~~~~~~~~~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSlGG  268 (446)
                      +||||||||||||++.+||+|.|||++||+|+.+++..+....++++++++++||||++++++|+++|++||++||||||
T Consensus       156 ~rVaAGaiAk~lL~~~~GI~I~s~v~~IG~i~~~~~~~~~~~~~~~~~~~~~~rc~d~~~~~~m~~~I~~ak~~GDSlGG  235 (413)
T PLN02754        156 GRVAAGAVAKKILKQFAGTEILAYVSQVHDVVLPEDLVDHETLTLEQIESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGG  235 (413)
T ss_pred             HHHHHHHHHHHHHHhhCCeEEEEEEEEEcCEecccccCCcchhhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHcCCCccc
Confidence            99999999999997646999999999999997532111212223678999999999999999999999999999999999


Q ss_pred             EEEEEEEeCCCCcCCcccCchHHHHHHHhccCCcccEEEecccccccccCCCccccceeecCCCceeeccCCCccccccc
Q 013280          269 VVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGI  348 (446)
Q Consensus       269 vve~~v~gvP~GLG~p~fdkLda~LA~AlmSIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGI  348 (446)
                      +|||+++|||+|||||+|||||++||+||||||||||||||+||+++.|+|||+||+|+++++|+++|+|||+|||+|||
T Consensus       236 ivev~~~gvP~GLG~pvfdkLda~LA~Al~SIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~~~~~TN~aGGI~GGI  315 (413)
T PLN02754        236 VVTCIVRNVPRGLGSPVFDKLEAELAKAMMSLPATKGFEIGSGFAGTLLTGSEHNDEFYMDEHGRIRTRTNRSGGIQGGI  315 (413)
T ss_pred             EEEEEEECCCCCCCccccccchHHHHHHhcCcCceeEEEEccchhhhhccccccCcceeecCCCceEecccCCCcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999876688999999999999999


Q ss_pred             cCCCceEEEEEeccCCcccccccccccCCceeeeecCCccccccccchhHHHHHHHHHHHHHHHHHHhccccccccchhh
Q 013280          349 SNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDL  428 (446)
Q Consensus       349 SnG~pIv~rva~KPtpSI~~~q~TVd~~~~e~~~~~~gRhDpCivpRA~pVvEAm~AlvLaD~~l~~~~~~~~~~~~~~~  428 (446)
                      ||||||+||++|||||||.+||+|||++++|++++++||||||++|||+||+|||+||||||++|++++.+....+++.|
T Consensus       316 SnG~pIv~rva~KPtpSI~k~q~TVd~~~~e~~~~~~gRhDpCivprA~pV~EAm~AlvLaD~~L~~~~~~~~~~~~~~~  395 (413)
T PLN02754        316 SNGEIIVMRIAFKPTSTIGKKQNTVTRDGQETELRARGRHDPCVVPRAVPMVEAMVALVLVDQLMAQYAQCELFPINPVL  395 (413)
T ss_pred             cCCCcEEEEEEeCCCcccccccccccCCCCEeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhCccccccCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999977555566667


Q ss_pred             cCCCCCCC
Q 013280          429 QGTMKLPE  436 (446)
Q Consensus       429 ~~~~~~~~  436 (446)
                      .+++.+..
T Consensus       396 ~~~~~~~~  403 (413)
T PLN02754        396 QEPLGIAS  403 (413)
T ss_pred             ccccccCc
Confidence            77776644

>COG0082 AroC Chorismate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PF01264 Chorismate_synt: Chorismate synthase; InterPro: IPR000453 Chorismate synthase (4 Back     alignment and domain information
>TIGR00033 aroC chorismate synthase Back     alignment and domain information
>PRK12463 chorismate synthase; Reviewed Back     alignment and domain information
>PRK05382 chorismate synthase; Validated Back     alignment and domain information
>cd07304 Chorismate_synthase Chorismase synthase, the enzyme catalyzing the final step of the shikimate pathway Back     alignment and domain information
>KOG4492 consensus Chorismate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4492 consensus Chorismate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>cd07304 Chorismate_synthase Chorismase synthase, the enzyme catalyzing the final step of the shikimate pathway Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query446
1r52_A382 Crystal Structure Of The Bifunctional Chorismate Sy 1e-97
1um0_A365 Crystal Structure Of Chorismate Synthase Complexed 1e-52
1sq1_A370 Crystal Structure Of The Chorismate Synthase From C 2e-49
1q1l_A401 Crystal Structure Of Chorismate Synthase Length = 4 5e-37
1ztb_A401 Crystal Structure Of Chorismate Synthase From Mycob 2e-36
2o11_A407 Mycobacterium Tuberculosis Chorismate Synthase Leng 2e-36
4ecd_A398 2.5 Angstrom Resolution Crystal Structure Of Bifido 7e-36
1qxo_A388 Crystal Structure Of Chorismate Synthase Complexed 1e-23
>pdb|1R52|A Chain A, Crystal Structure Of The Bifunctional Chorismate Synthase From Saccharomyces Cerevisiae Length = 382 Back     alignment and structure 
Iteration: 1

 Score =  353 bits (905), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 187/372 (50%), Positives = 236/372 (63%), Gaps = 13/372 (3%)
Query: 55  SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTP 114
           S FG  FRVTT+GESH   VGCI+DG PP + L+EAD+Q  L RR     RPGQS+++TP
Sbjct: 2   STFGKLFRVTTYGESHCKSVGCIVDGVPPGMSLTEADIQPQLTRR-----RPGQSKLSTP 56
Query: 115 RKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXX 174
           R E D  +I SG   G T GTPI + + N DQR HDYS+M    RPSHAD TY  KY   
Sbjct: 57  RDEKDRVEIQSGTEFGKTLGTPIAMMIKNEDQRPHDYSDMDKFPRPSHADFTYSEKYGIK 116
Query: 175 XXXXXXXXXARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEM---- 230
                    ARETIGRVA GA+A+K L Q +  EI+A+V+Q   + +  D  D E     
Sbjct: 117 ASSGGGRASARETIGRVASGAIAEKFLAQNSNVEIVAFVTQIGEIKMNRDSFDPEFQHLL 176
Query: 231 --LTLDQVES-NIVRCPDPEYAEKMIAAIDAXXXXXXXXXXXXTCIVRNCPRGLGSPVFD 287
             +T ++V+S   +RCPD   A  M+  I+             TC+VRN P GLG P FD
Sbjct: 177 NTITREKVDSMGPIRCPDASVAGLMVKEIEKYRGNKDSIGGVVTCVVRNLPTGLGEPCFD 236
Query: 288 KLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTD-EFGNIRTRTNRSGGIQG 346
           KLEA LA AM+S+PA+KGFE+GSGF G  + GS+HND FY + E   +RT+TN SGG+QG
Sbjct: 237 KLEAMLAHAMLSIPASKGFEIGSGFQGVSVPGSKHNDPFYFEKETNRLRTKTNNSGGVQG 296
Query: 347 GISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVAL 406
           GISNGE I   + FK  +TI ++Q T T + +E  L A+GRHDP V PRA+P+VEAM AL
Sbjct: 297 GISNGENIYFSVPFKSVATISQEQKTATYDGEEGILAAKGRHDPAVTPRAIPIVEAMTAL 356
Query: 407 VLMDQLMAQHAQ 418
           VL D L+ Q A+
Sbjct: 357 VLADALLIQKAR 368
>pdb|1UM0|A Chain A, Crystal Structure Of Chorismate Synthase Complexed With Fmn Length = 365 Back     alignment and structure
>pdb|1SQ1|A Chain A, Crystal Structure Of The Chorismate Synthase From Campylobacter Jejuni, Northeast Structural Genomics Target Br19 Length = 370 Back     alignment and structure
>pdb|1Q1L|A Chain A, Crystal Structure Of Chorismate Synthase Length = 401 Back     alignment and structure
>pdb|1ZTB|A Chain A, Crystal Structure Of Chorismate Synthase From Mycobacterium Tuberculosis Length = 401 Back     alignment and structure
>pdb|2O11|A Chain A, Mycobacterium Tuberculosis Chorismate Synthase Length = 407 Back     alignment and structure
>pdb|4ECD|A Chain A, 2.5 Angstrom Resolution Crystal Structure Of Bifidobacterium Longum Chorismate Synthase Length = 398 Back     alignment and structure
>pdb|1QXO|A Chain A, Crystal Structure Of Chorismate Synthase Complexed With Oxidized Fmn And Epsp Length = 388 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query446
1r53_A382 Chorismate synthase; two layers alpha-beta, lyase; 0.0
1sq1_A370 Chorismate synthase; structural genomics, bifuncti 0.0
1um0_A365 Chorismate synthase; beta-alpha-beta sandwich fold 0.0
4ecd_A398 Chorismate synthase; 4-layer sandwich, lyase; 2.50 0.0
2o11_A407 Chorismate synthase; shikimate pathway, LYA; 1.65A 0.0
1q1l_A401 Chorismate synthase; beta alpha beta sandwich, str 0.0
1qxo_A388 Chorismate synthase; beta-alpha-beta, flavoprotein 0.0
>1r53_A Chorismate synthase; two layers alpha-beta, lyase; 2.20A {Saccharomyces cerevisiae} SCOP: d.258.1.1 PDB: 1r52_A Length = 382 Back     alignment and structure
 Score =  660 bits (1705), Expect = 0.0
 Identities = 198/373 (53%), Positives = 248/373 (66%), Gaps = 13/373 (3%)

Query: 55  SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTP 114
           S FG  FRVTT+GESH   VGCI+DG PP + L+EAD+Q  L RR     RPGQS+++TP
Sbjct: 2   STFGKLFRVTTYGESHCKSVGCIVDGVPPGMSLTEADIQPQLTRR-----RPGQSKLSTP 56

Query: 115 RKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVR 174
           R E D  +I SG   G T GTPI + + N DQR HDYS+M    RPSHAD TY  KYG++
Sbjct: 57  RDEKDRVEIQSGTEFGKTLGTPIAMMIKNEDQRPHDYSDMDKFPRPSHADFTYSEKYGIK 116

Query: 175 SVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLD 234
           +  GGGR+SARETIGRVA GA+A+K L Q +  EI+A+V+Q   + +  D  D E   L 
Sbjct: 117 ASSGGGRASARETIGRVASGAIAEKFLAQNSNVEIVAFVTQIGEIKMNRDSFDPEFQHLL 176

Query: 235 Q-------VESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFD 287
                        +RCPD   A  M+  I+  R   DS+GGVVTC+VRN P GLG P FD
Sbjct: 177 NTITREKVDSMGPIRCPDASVAGLMVKEIEKYRGNKDSIGGVVTCVVRNLPTGLGEPCFD 236

Query: 288 KLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTD-EFGNIRTRTNRSGGIQG 346
           KLEA LA AM+S+PA+KGFE+GSGF G  + GS+HND FY + E   +RT+TN SGG+QG
Sbjct: 237 KLEAMLAHAMLSIPASKGFEIGSGFQGVSVPGSKHNDPFYFEKETNRLRTKTNNSGGVQG 296

Query: 347 GISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVAL 406
           GISNGE I   + FK  +TI ++Q T T + +E  L A+GRHDP V PRA+P+VEAM AL
Sbjct: 297 GISNGENIYFSVPFKSVATISQEQKTATYDGEEGILAAKGRHDPAVTPRAIPIVEAMTAL 356

Query: 407 VLMDQLMAQHAQC 419
           VL D L+ Q A+ 
Sbjct: 357 VLADALLIQKARD 369
>1sq1_A Chorismate synthase; structural genomics, bifunctional alpha/beta tetrameric PROT protein structure initiative; 2.80A {Campylobacter jejuni} SCOP: d.258.1.1 Length = 370 Back     alignment and structure
>1um0_A Chorismate synthase; beta-alpha-beta sandwich fold, lyase; HET: FMN; 1.95A {Helicobacter pylori} SCOP: d.258.1.1 PDB: 1umf_A Length = 365 Back     alignment and structure
>4ecd_A Chorismate synthase; 4-layer sandwich, lyase; 2.50A {Bifidobacterium longum subsp} Length = 398 Back     alignment and structure
>2o11_A Chorismate synthase; shikimate pathway, LYA; 1.65A {Mycobacterium tuberculosis} PDB: 2o12_A* 2qhf_A 2g85_A 1ztb_A Length = 407 Back     alignment and structure
>1q1l_A Chorismate synthase; beta alpha beta sandwich, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.05A {Aquifex aeolicus} SCOP: d.258.1.1 Length = 401 Back     alignment and structure
>1qxo_A Chorismate synthase; beta-alpha-beta, flavoprotein, shikimate, anti-infective, lyase; HET: FMN EPS; 2.00A {Streptococcus pneumoniae} SCOP: d.258.1.1 Length = 388 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query446
1r53_A382 Chorismate synthase; two layers alpha-beta, lyase; 100.0
1um0_A365 Chorismate synthase; beta-alpha-beta sandwich fold 100.0
1sq1_A370 Chorismate synthase; structural genomics, bifuncti 100.0
4ecd_A398 Chorismate synthase; 4-layer sandwich, lyase; 2.50 100.0
1qxo_A388 Chorismate synthase; beta-alpha-beta, flavoprotein 100.0
2o11_A407 Chorismate synthase; shikimate pathway, LYA; 1.65A 100.0
1q1l_A401 Chorismate synthase; beta alpha beta sandwich, str 100.0
>1r53_A Chorismate synthase; two layers alpha-beta, lyase; 2.20A {Saccharomyces cerevisiae} SCOP: d.258.1.1 PDB: 1r52_A Back     alignment and structure
Probab=100.00  E-value=1.8e-152  Score=1150.15  Aligned_cols=365  Identities=54%  Similarity=0.872  Sum_probs=266.5

Q ss_pred             cccccCceEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhcccccCcCCCCCCCCCCCCCCCCeEEEEecccCCccc
Q 013280           54 GSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTPRKETDTCKIYSGVSEGVTT  133 (446)
Q Consensus        54 ~ntfG~~~r~ttfGESHG~aig~VIDG~PaGl~i~~edIq~eL~R~~~~~RrpG~~r~~t~R~E~D~veIlSGv~~G~Tt  133 (446)
                      +||||++|||||||||||++||||||||||||+||+||||.||+|     |||||++++|||+|+|+|+||||||+|+||
T Consensus         1 gntfG~~fr~tT~GESHG~alg~vIdG~PaGl~l~~~dIq~~L~R-----RrpG~~r~~t~R~E~D~v~IlSGv~~G~Tt   75 (382)
T 1r53_A            1 MSTFGKLFRVTTYGESHCKSVGCIVDGVPPGMSLTEADIQPQLTR-----RRPGQSKLSTPRDEKDRVEIQSGTEFGKTL   75 (382)
T ss_dssp             CCEECSSSEEEEECCTTSSEEEEEEECCCTTCBCCGGGTHHHHHT-----TCC------------CCCEECSSEETTEEC
T ss_pred             CCcCcceeEEEecccCCCCeeEEEEecCCCCCccCHHHHHHHHHh-----hCCCCCCCCCCCCCCCeeEEeecccCCccC
Confidence            489999999999999999999999999999999999999999999     999999999999999999999999999999


Q ss_pred             CCcEEEEEeCCCCCCCCccccccCCCCCcccccccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEE
Q 013280          134 GTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYV  213 (446)
Q Consensus       134 GtPIa~~I~N~D~~s~DY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa~rVaAGaIAk~~L~~~~GI~I~s~V  213 (446)
                      ||||+++|+|+||+|+||+++++.||||||||||++|||+|||||||||||||||+||||||||||||++.+||+|.|||
T Consensus        76 GtPI~~~I~N~D~~s~dy~~~~~~~RPGHAD~t~~~KYG~rD~RgggRsSaRETa~RVAaGAiAk~~L~~~~GI~i~a~v  155 (382)
T 1r53_A           76 GTPIAMMIKNEDQRPHDYSDMDKFPRPSHADFTYSEKYGIKASSGGGRASARETIGRVASGAIAEKFLAQNSNVEIVAFV  155 (382)
T ss_dssp             SSCEEEEEEC-----------------------------------------CCCHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEEecCCCCCCchhhccCCCCCCccchhhhhhcCCccccCcchhhHHHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999986699999999


Q ss_pred             EEeeceecCCCCCC------cccccHhhhhcCc-CCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEEeCCCCcCCccc
Q 013280          214 SQAHNVVLPEDVVD------HEMLTLDQVESNI-VRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVF  286 (446)
Q Consensus       214 ~~IG~i~~~~~~~~------~~~~~~~~~~~~~-vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~v~gvP~GLG~p~f  286 (446)
                      ++||+|+.......      ....+++++++|+ |||||++++++|+++|+++|++||||||+|||+|+|||+|||||+|
T Consensus       156 ~~iG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cpd~~~~~~m~~~I~~ak~~GDS~GGvvevv~~gvP~GLG~pvf  235 (382)
T 1r53_A          156 TQIGEIKMNRDSFDPEFQHLLNTITREKVDSMGPIRCPDASVAGLMVKEIEKYRGNKDSIGGVVTCVVRNLPTGLGEPCF  235 (382)
T ss_dssp             EEETTEECCCCTTCHHHHHHHHHCCHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHTTCCCCEEEEEEEESCCTTCSBTTT
T ss_pred             EEEcCEecccccccccccccccccCHHHHhcCCCccCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEecCCCCCCCccc
Confidence            99999986421000      0134578899999 9999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHhccCCcccEEEecccccccccCCCccccceeecCC-CceeeccCCCccccccccCCCceEEEEEeccCCc
Q 013280          287 DKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEF-GNIRTRTNRSGGIQGGISNGEIINMRIAFKPTST  365 (446)
Q Consensus       287 dkLda~LA~AlmSIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~-g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpS  365 (446)
                      |||||+||+||||||||||||||+||++++|+|||+||+|+.+++ |+++|+|||+|||+|||||||||+||+|||||||
T Consensus       236 dkLda~LA~A~mSI~AvKGvEiG~GF~~a~~~GSe~nD~~~~~~~~g~~~~~TN~aGGI~GGISnG~pIv~r~a~KPt~S  315 (382)
T 1r53_A          236 DKLEAMLAHAMLSIPASKGFEIGSGFQGVSVPGSKHNDPFYFEKETNRLRTKTNNSGGVQGGISNGENIYFSVPFKSVAT  315 (382)
T ss_dssp             BCHHHHHHHHHHTSTTBCCCEETTTTGGGGSCHHHHHCSBC--------CBCCCCSCSEETTEECSSCEEEEEEECCC--
T ss_pred             ccchHHHHHHhcCccceeEEEeccchhhhhccccccccceeccccCCceeecCcCccCccccccCCCeEEEEEEECCccc
Confidence            999999999999999999999999999999999999999984321 5799999999999999999999999999999999


Q ss_pred             ccccccccccCCceeeeecCCccccccccchhHHHHHHHHHHHHHHHHHHhccccccc
Q 013280          366 IGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFP  423 (446)
Q Consensus       366 I~~~q~TVd~~~~e~~~~~~gRhDpCivpRA~pVvEAm~AlvLaD~~l~~~~~~~~~~  423 (446)
                      |.+||+|||++++++++.++||||||++|||+||+|||+||||||++|++++++...+
T Consensus       316 I~~~q~TVd~~~~~~~~~~~gRhDpCvvprA~pV~EAm~AlvLaD~~L~~~~~~~~~~  373 (382)
T 1r53_A          316 ISQEQKTATYDGEEGILAAKGRHDPAVTPRAIPIVEAMTALVLADALLIQKARDFSRS  373 (382)
T ss_dssp             ---------------------CCCSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             ccccccccccccCcchhhccCCCCcccccchHHHHHHHHHHHHHHHHHHHhhhccCcc
Confidence            9999999999999999999999999999999999999999999999999998765443
>1um0_A Chorismate synthase; beta-alpha-beta sandwich fold, lyase; HET: FMN; 1.95A {Helicobacter pylori} SCOP: d.258.1.1 PDB: 1umf_A Back     alignment and structure
>1sq1_A Chorismate synthase; structural genomics, bifunctional alpha/beta tetrameric PROT protein structure initiative; 2.80A {Campylobacter jejuni} SCOP: d.258.1.1 Back     alignment and structure
>4ecd_A Chorismate synthase; 4-layer sandwich, lyase; 2.50A {Bifidobacterium longum subsp} Back     alignment and structure
>1qxo_A Chorismate synthase; beta-alpha-beta, flavoprotein, shikimate, anti-infective, lyase; HET: FMN EPS; 2.00A {Streptococcus pneumoniae} SCOP: d.258.1.1 Back     alignment and structure
>2o11_A Chorismate synthase; shikimate pathway, LYA; 1.65A {Mycobacterium tuberculosis} PDB: 2o12_A* 2qhf_A 2g85_A 1ztb_A Back     alignment and structure
>1q1l_A Chorismate synthase; beta alpha beta sandwich, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.05A {Aquifex aeolicus} SCOP: d.258.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 446
d1r53a_371 d.258.1.1 (A:) Chorismate synthase, AroC {Baker's 1e-144
d1q1la_397 d.258.1.1 (A:) Chorismate synthase, AroC {Aquifex 1e-135
d1qxoa_388 d.258.1.1 (A:) Chorismate synthase, AroC {Streptoc 1e-133
d1sq1a_360 d.258.1.1 (A:) Chorismate synthase, AroC {Campylob 1e-131
d1um0a_365 d.258.1.1 (A:) Chorismate synthase, AroC {Helicoba 1e-131
>d1r53a_ d.258.1.1 (A:) Chorismate synthase, AroC {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 371 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Chorismate synthase, AroC
superfamily: Chorismate synthase, AroC
family: Chorismate synthase, AroC
domain: Chorismate synthase, AroC
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  413 bits (1063), Expect = e-144
 Identities = 199/373 (53%), Positives = 254/373 (68%), Gaps = 13/373 (3%)

Query: 55  SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTP 114
           S FG  FRVTT+GESH   VGCI+DG PP + L+EAD+Q  L RR     RPGQS+++TP
Sbjct: 2   STFGKLFRVTTYGESHCKSVGCIVDGVPPGMSLTEADIQPQLTRR-----RPGQSKLSTP 56

Query: 115 RKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVR 174
           R E D  +I SG   G T GTPI + + N DQR HDYS+M    RPSHAD TY  KYG++
Sbjct: 57  RDEKDRVEIQSGTEFGKTLGTPIAMMIKNEDQRPHDYSDMDKFPRPSHADFTYSEKYGIK 116

Query: 175 SVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEM---- 230
           +  GGGR+SARETIGRVA GA+A+K L Q +  EI+A+V+Q   + +  D  D E     
Sbjct: 117 ASSGGGRASARETIGRVASGAIAEKFLAQNSNVEIVAFVTQIGEIKMNRDSFDPEFQHLL 176

Query: 231 --LTLDQVES-NIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFD 287
             +T ++V+S   +RCPD   A  M+  I+  R   DS+GGVVTC+VRN P GLG P FD
Sbjct: 177 NTITREKVDSMGPIRCPDASVAGLMVKEIEKYRGNKDSIGGVVTCVVRNLPTGLGEPCFD 236

Query: 288 KLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEF-GNIRTRTNRSGGIQG 346
           KLEA LA AM+S+PA+KGFE+GSGF G  + GS+HND FY ++    +RT+TN SGG+QG
Sbjct: 237 KLEAMLAHAMLSIPASKGFEIGSGFQGVSVPGSKHNDPFYFEKETNRLRTKTNNSGGVQG 296

Query: 347 GISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVAL 406
           GISNGE I   + FK  +TI ++Q T T + +E  L A+GRHDP V PRA+P+VEAM AL
Sbjct: 297 GISNGENIYFSVPFKSVATISQEQKTATYDGEEGILAAKGRHDPAVTPRAIPIVEAMTAL 356

Query: 407 VLMDQLMAQHAQC 419
           VL D L+ Q A+ 
Sbjct: 357 VLADALLIQKARD 369
>d1q1la_ d.258.1.1 (A:) Chorismate synthase, AroC {Aquifex aeolicus [TaxId: 63363]} Length = 397 Back     information, alignment and structure
>d1qxoa_ d.258.1.1 (A:) Chorismate synthase, AroC {Streptococcus pneumoniae [TaxId: 1313]} Length = 388 Back     information, alignment and structure
>d1sq1a_ d.258.1.1 (A:) Chorismate synthase, AroC {Campylobacter jejuni [TaxId: 197]} Length = 360 Back     information, alignment and structure
>d1um0a_ d.258.1.1 (A:) Chorismate synthase, AroC {Helicobacter pylori [TaxId: 210]} Length = 365 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query446
d1um0a_365 Chorismate synthase, AroC {Helicobacter pylori [Ta 100.0
d1sq1a_360 Chorismate synthase, AroC {Campylobacter jejuni [T 100.0
d1r53a_371 Chorismate synthase, AroC {Baker's yeast (Saccharo 100.0
d1qxoa_388 Chorismate synthase, AroC {Streptococcus pneumonia 100.0
d1q1la_397 Chorismate synthase, AroC {Aquifex aeolicus [TaxId 100.0
d1qxoa_388 Chorismate synthase, AroC {Streptococcus pneumonia 80.34
>d1um0a_ d.258.1.1 (A:) Chorismate synthase, AroC {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Chorismate synthase, AroC
superfamily: Chorismate synthase, AroC
family: Chorismate synthase, AroC
domain: Chorismate synthase, AroC
species: Helicobacter pylori [TaxId: 210]

Probab=100.00  E-value=1.7e-147  Score=1111.07  Aligned_cols=358  Identities=38%  Similarity=0.606  Sum_probs=346.9

Q ss_pred             ccccCceEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhcccccCcCCCCCCCCCCCCCCCCeEEEEecccCCcccC
Q 013280           55 SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTPRKETDTCKIYSGVSEGVTTG  134 (446)
Q Consensus        55 ntfG~~~r~ttfGESHG~aig~VIDG~PaGl~i~~edIq~eL~R~~~~~RrpG~~r~~t~R~E~D~veIlSGv~~G~TtG  134 (446)
                      ||||++|||||||||||++||||||||||||+||+|+||+||+|     |||||++++|||+|+|+|+||||||+|+|||
T Consensus         2 ns~G~~~r~tt~GESHG~~ig~vIdG~PaGl~i~~e~I~~~L~R-----R~pG~~~~~t~R~E~D~veilSGv~~G~TtG   76 (365)
T d1um0a_           2 NTLGRFLRLTTFGESHGDVIGGVLDGMPSGIKIDYALLENEMKR-----RQGGRNVFITPRKEDDKVEITSGVFEDFSTG   76 (365)
T ss_dssp             CEECSSSEEEECCSCCSSEEEEEEECCCBTCBCCHHHHHHHHHH-----HTTCCSSCCCHHHHSCEEEECSSEETTEECS
T ss_pred             CCcccceEEEeeecCCCCeeEEEEeccCcCCEeCHHHHHHHHhc-----CCCCCCCCCccCCCCCeEEEeeCeeCCeecC
Confidence            89999999999999999999999999999999999999999999     9999999999999999999999999999999


Q ss_pred             CcEEEEEeCCCCCCCCccccccCCCCCcccccccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEE
Q 013280          135 TPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVS  214 (446)
Q Consensus       135 tPIa~~I~N~D~~s~DY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa~rVaAGaIAk~~L~~~~GI~I~s~V~  214 (446)
                      +||+++|+|+|++|+||+++++.||||||||||++|||++|+||||||||||||+||||||||||||++ +||+|.+||+
T Consensus        77 ~PI~~~I~N~d~~s~dy~~~~~~pRPGHAD~~~~~KYg~~D~RgggRsSaReTa~rVaaGaiAk~lL~~-~gI~v~~~v~  155 (365)
T d1um0a_          77 TPIGFLIHNQRARSKDYDNIKNLFRPSHADFTYFHKYGIRDFRGGGRSSARESAIRVAAGAFAKMLLRE-IGIVCESGII  155 (365)
T ss_dssp             SCEEEEEECCCSCCCCCCCCTTBCCTTSTHHHHHHHHCCCCCCCTTCSTHHHHHHHHHHHHHHHHHHHH-TTEEEEEEEE
T ss_pred             CcceeeecccccCccchhhhhccCCCCCcchhhhccCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHh-cCceEEEEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999 6999999999


Q ss_pred             EeeceecCCCCCCcccccHhhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEEeC------CCCcCCcccCc
Q 013280          215 QAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNC------PRGLGSPVFDK  288 (446)
Q Consensus       215 ~IG~i~~~~~~~~~~~~~~~~~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~v~gv------P~GLG~p~fdk  288 (446)
                      +||++..+       ..+++.++.++++|+|++++++|+++|++||++||||||+|||+++||      |+|||+|+|||
T Consensus       156 ~IG~i~~~-------~~~~~~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSvGG~ve~~~~gv~~~~g~P~GlG~P~f~k  228 (365)
T d1um0a_         156 EIGGIKAK-------NYDFNHALKSEIFALDEEQEEAQKTAIQNAIKNHDSIGGVALIRARSIKTNQKLPIGLGQGLYAK  228 (365)
T ss_dssp             EETTEECS-------SCCHHHHHHSTTCBSCHHHHHHHHHHHHHHHHTTCCBCEEEEEEEEESSTTCCCCSCCSBTTTBC
T ss_pred             eccccccc-------ccchhhhcccccccCChhhHHHHHHHHHHHHhcCCCcCceEEEEEecccccccCCcccCCCcccc
Confidence            99999864       234677889999999999999999999999999999999999999996      99999999999


Q ss_pred             hHHHHHHHhccCCcccEEEecccccccccCCCccccceeecCCCceeeccCCCccccccccCCCceEEEEEeccCCcccc
Q 013280          289 LEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGR  368 (446)
Q Consensus       289 Lda~LA~AlmSIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~~  368 (446)
                      ||++||+||||||||||||||+||+++.|+|||+||+|..+     .+.|||+|||+|||||||||+||++|||||||.+
T Consensus       229 Lda~LA~A~mSIpAvKgVE~G~Gf~~a~~~GSe~nD~~~~~-----~~~tN~aGGi~GGiSnG~pI~~rva~KP~sSI~~  303 (365)
T d1um0a_         229 LDAKIAEAMMGLNGVKAVEIGKGVESSLLKGSEYNDLMDQK-----GFLSNRSGGVLGGMSNGEEIIVRVHFKPTPSIFQ  303 (365)
T ss_dssp             HHHHHHHHHHTSTTEEEEEETTGGGGGGSBHHHHCCCEETT-----EESCCTTTTEETTEECSSCEEEEEEECCCSCCSS
T ss_pred             hhhHHHHHHhcccceeeeeeccchhhhhccHhhhcCcccCC-----CCcccCCCceecCcCCCCceEEEEEeCCCcccCC
Confidence            99999999999999999999999999999999999998632     3789999999999999999999999999999999


Q ss_pred             cccccccCCceeeeecCCccccccccchhHHHHHHHHHHHHHHHHHHhccccccccchhhcCC
Q 013280          369 KQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQGT  431 (446)
Q Consensus       369 ~q~TVd~~~~e~~~~~~gRhDpCivpRA~pVvEAm~AlvLaD~~l~~~~~~~~~~~~~~~~~~  431 (446)
                      ||+|||++++|++++++||||||++|||+||+|||+||||||++|++++ +++++||++|.|.
T Consensus       304 pq~Tvd~~~~e~~~~~~gRhDpCivprA~~V~EAm~alvlaD~~L~~~~-~~~~~~k~~~~~~  365 (365)
T d1um0a_         304 PQRTIDINGNECECLLKGRHDPCIAIRGSVVCESLLALVLADMVLLNLT-SKIEYLKTIYNEN  365 (365)
T ss_dssp             CEEEEBTTSCEEEECCCSCCCSCTHHHHHHHHHHHHHHHHHHHHHHGGG-SBHHHHHHHHTTC
T ss_pred             cccceECCCCEEEeeecCCCCCcCccccHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999999999994 7999999999874
>d1sq1a_ d.258.1.1 (A:) Chorismate synthase, AroC {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1r53a_ d.258.1.1 (A:) Chorismate synthase, AroC {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qxoa_ d.258.1.1 (A:) Chorismate synthase, AroC {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1q1la_ d.258.1.1 (A:) Chorismate synthase, AroC {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1qxoa_ d.258.1.1 (A:) Chorismate synthase, AroC {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure