Citrus Sinensis ID: 013389

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440----
Protein Sequence
MKDMEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKELPMIYHQKGESEEQTVGVGGAVLLSLGSLVRRNLYNLGLIRSYS
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHcccccEEEEEccccccEEEEEEEccccHHHHHHHHHHHHHcccEEEEEEEEEccEEEEEEEEEEEcccccccHHHHHHHHHHcccccccccccccccEEEEEEEEcccccHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEEccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccHHHHHHHHHHcccccccccccccccccEEEEEccccccEEEEEEEEcccccHHHHHHHHHHcccEEEEEEEEEEcccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHcccccccEEEEEEEcccccHHHHHHHHHHHcccEEEEEEEEccccEEEEEEEEEccccccccHHHHHHHHHHHHHcHHcccccccccccccccccccccccccccHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHccccEEEEEccccccEEEEEEcccccccHHHHHHHHHHHccEEEEEEEEEccccEEEEEEEEEcccccEcccHHHHHHHHHHHccccccccccccccEEEEEEcccccHHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHccccccHHHccccccccccHHHHHHHHHcccccHccccHHcccccccEEEEEccccccEEEEEEEcccccHHHHHHHHHHHHccEEEEEEEEEcccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEEEEccccccccHHHHHHHHHHHcccEEEEcccccccccccccccccccccccEEEHccccccccccccccEEccc
Coil and Loop (DISEMBL)
mkdmewpaclDEYEKLVIRMntprvvidnavcptatLVKVDSARRHGILLEAVQVLTDLNLLIKKAyissdgrffMDVFHVtdlngnkltdESVISYIEQSLETIhygrsnsfngltaleltgtdrvGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYvkdcnsgspiedsqqIDRIEARLRNVLkgdndirsAKMTVSMAVTHTERRLHQMMFadrdyermpvlrhstdypvvtvqnwadRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHidgtpissepeRQRVIQCLEAAVGrrasegvrLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVtdemgnpadpKIIEAVRQKIglsnlkvkelpmiyhqkgeseeqtvgVGGAVLLSLGSLVRrnlynlglirsys
Flexible Loop (DISEMBL)
MKDMEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRnvlkgdndirsakmtvSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGtpisseperQRVIQCLEAAVGRRASEGVRLELCMEDRQGLladvtrtfrenglnvtraevsterdeALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKELPMIYHQkgeseeqtvgVGGAVLLSlgslvrrnlynlglirsys
Low Complexity Region (SEG)
MKDMEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKELPMIYHQKGESEEQTvgvggavllslgslvRRNLYNLGLIRSYS
Disordered region (IsUnstruct)
*****WPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNS************IEARLRNVLKG***I***KMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPI******QRVIQCLEAAVGRRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKELPMIYHQKG***EQTVGVGGAVLLSLGSLVRRNLYNLGLIR***
Disordered Region (DISOPRED)
******P*CLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTV****************************HSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNL******************************GSLVRRNLYNLGLIRSY*
Disordered Region (DISEMBL)
MKDMEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKELPMIYHQKGESEEQTVGVGGAVLLSLGSLVRRNLYNLGLIRSYS
Disordered Region (DISPRO)
**DMEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG***SFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGD*D*************H*****H*MMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKEL******************GAVLLSLGSLVRRNLYNLGLIRSYS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKDMEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKELPMIYHQKGESEEQTVGVGGAVLLSLGSLVRRNLYNLGLIRSYS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	444	2.2.26 [Sep-21-2011]
Q2RNG2	936	[Protein-PII] uridylyltra	yes	no	0.407	0.193	0.276	2e-12
Q5FPT6	949	[Protein-PII] uridylyltra	yes	no	0.414	0.193	0.276	1e-09
A6U5G1	949	[Protein-PII] uridylyltra	yes	no	0.195	0.091	0.390	3e-08
Q8RQD1	933	[Protein-PII] uridylyltra	yes	no	0.407	0.193	0.239	5e-08
Q53245	948	[Protein-PII] uridylyltra	N/A	no	0.198	0.092	0.348	1e-07
P56884	949	[Protein-PII] uridylyltra	yes	no	0.195	0.091	0.379	1e-07
Q8UIF1	942	[Protein-PII] uridylyltra	yes	no	0.454	0.214	0.25	1e-07
Q2N784	919	[Protein-PII] uridylyltra	yes	no	0.112	0.054	0.35	1e-06
Q9AC53	940	[Protein-PII] uridylyltra	yes	no	0.358	0.169	0.259	1e-06
B8GWX0	940	[Protein-PII] uridylyltra	yes	no	0.358	0.169	0.259	1e-06

>sp|Q2RNG2|GLND_RHORT [Protein-PII] uridylyltransferase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=glnD PE=3 SV=1

 Score = 74.3 bits (181), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 94/206 (45%), Gaps = 25/206 (12%)

Query: 125 DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARL 184
           D  GL S++   +A    ++++AK+ T +   A  I+      G  IE  ++I R+   +
Sbjct: 735 DHPGLFSKIAGAMALAGVNILDAKITTMSDGGALDIFTVQTLEGHAIEKEERIARLAKTV 794

Query: 185 RNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMP-VLRHSTDYPVVTVQNWA 243
           R+VL GD  +  A                      R   R+P   RH T  P V V N A
Sbjct: 795 RDVLTGDLPLEKA--------------------LRRQPPRLPERTRHLTVPPRVIVDNQA 834

Query: 244 DRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISS 303
            ++++V+ +  +DR   L+ V   LTD+   +  A ++T GER    FY++ + G  I  
Sbjct: 835 SKTHTVIEINGRDRPGFLYAVTRALTDVAVQISSARVSTYGERVVDSFYVKDVFGMKIVH 894

Query: 304 EPERQRVIQCLEAA----VGRRASEG 325
             +  ++ + LEAA    V R+  EG
Sbjct: 895 RAKLAQIREALEAAITQTVPRKVEEG 920

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.
Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) (taxid: 269796)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 5EC: 9

>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain 621H) GN=glnD PE=3 SV=1

 Score = 65.1 bits (157), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 22/206 (10%)

Query: 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPIED 173
           G+T L +   D  GL S++   LA    S+V+A++ T  +G      +V+D   G   E+
Sbjct: 754 GVTELTVLCADHPGLFSQIAGALAVSGASIVDARIHTLSDGMALDTFWVQD-GEGCSFEE 812

Query: 174 SQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTH-TERRLHQMMFADRDYERMPVLRHST 232
             Q+ R+   +   L G  DIR     +  A  H T RR+  +                 
Sbjct: 813 PHQLGRLNHLVEQALSGRLDIRKG---IEDASHHSTSRRMRAIHVP-------------- 855

Query: 233 DYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFY 292
             P V + N A   ++V+ V  +DR  LL DV   L+     +  A I T G RA   FY
Sbjct: 856 --PRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAHITTYGMRAVDVFY 913

Query: 293 IRHIDGTPISSEPERQRVIQCLEAAV 318
           +R + G  I+      R+ + L A++
Sbjct: 914 VRDLLGMKITDPVRLARLRETLLASL 939

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Gluconobacter oxydans (strain 621H) (taxid: 290633)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|A6U5G1|GLND_SINMW [Protein-PII] uridylyltransferase OS=Sinorhizobium medicae (strain WSM419) GN=glnD PE=3 SV=1

 Score = 60.1 bits (144), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 52/87 (59%)

Query: 22  TPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHV 81
           TP V I NA+    T+++V+   R G+L E   VL+DL+L I  A+I++ G   +D F+V
Sbjct: 830 TPEVTISNALSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYV 889

Query: 82  TDLNGNKLTDESVISYIEQSLETIHYG 108
           TDL G+K+T E+    I   L+ +  G
Sbjct: 890 TDLVGSKITSENRQMNIAARLKAVLAG 916

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Sinorhizobium medicae (strain WSM419) (taxid: 366394)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense GN=glnD PE=3 SV=1

 Score = 59.7 bits (143), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 36/217 (16%)

Query: 109 RSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNS 167
           R +    +T + +  TD  GL S +   LA     +V+A+++T  NG    +  V+D   
Sbjct: 737 RIDRGRAITEVTIFATDHHGLFSRLAGALAAAGADIVDARIFTMTNGMALDVFTVQDAAG 796

Query: 168 GSPIEDSQQIDRIEARLRNVLKG------DNDIRSAKMTVSMAVTHTERRLHQMMFADRD 221
           G   E   ++ ++   +  VL G      D   R A       V H              
Sbjct: 797 GGAFESGDKLAKLSVMIEKVLSGQLKPLHDLTKRKAPHASRTRVFHVP------------ 844

Query: 222 YERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATIN 281
                        P V + N A  +++V+ V  +DR  LL+D+   LT++   +  A I+
Sbjct: 845 -------------PRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKIS 891

Query: 282 TAGERAYLEFYIRHIDGTPISSEPE----RQRVIQCL 314
           T GE+A   FY++ + G  ++ E +    R+R++  L
Sbjct: 892 TYGEKAIDVFYVKDVFGLKVTHENKLAQIRERLLHAL 928

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Azospirillum brasilense (taxid: 192)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q53245|GLND_RHITR [Protein-PII] uridylyltransferase OS=Rhizobium tropici GN=glnD PE=3 SV=2

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 54/89 (60%)

Query: 23  PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
           P V+I N++    T+++V+   R G+L E   VL+DL+L I+ A I++ G   +D F+V 
Sbjct: 826 PSVIITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVA 885

Query: 83  DLNGNKLTDESVISYIEQSLETIHYGRSN 111
           DL G K+++E+  +YI   L+ +  G  +
Sbjct: 886 DLVGQKISNENRRAYITARLKAVMAGEED 914

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhizobium tropici (taxid: 398)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|P56884|GLND_RHIME [Protein-PII] uridylyltransferase OS=Rhizobium meliloti (strain 1021) GN=glnD PE=3 SV=1

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 51/87 (58%)

Query: 22  TPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHV 81
           TP V I N +    T+++V+   R G+L E   VL+DL+L I  A+I++ G   +D F+V
Sbjct: 830 TPEVTISNTLSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYV 889

Query: 82  TDLNGNKLTDESVISYIEQSLETIHYG 108
           TDL G+K+T E+    I   L+ +  G
Sbjct: 890 TDLVGSKITSENRQMNIAARLKAVLAG 916

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhizobium meliloti (strain 1021) (taxid: 266834)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q8UIF1|GLND_AGRT5 [Protein-PII] uridylyltransferase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=glnD PE=3 SV=1

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 104/228 (45%), Gaps = 26/228 (11%)

Query: 99  EQSLETIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIA 157
           E++L T+   R++SF+ +T + +   D   LLS +    A    ++ +A+++T  +GR  
Sbjct: 713 EKALSTM--VRTHSFHAITEITVLAPDHPRLLSIITGACAAAGANIADAQIFTTSDGRAL 770

Query: 158 SLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVS-MAVTHTERRLHQMM 216
             I +   N   PI++ +       R  NV K   ++ S K  +  M  T T+ R  +  
Sbjct: 771 DTILI---NREFPIDEDET-----RRGANVGKLIEEVLSGKQRLPEMIATRTKSRRKKSA 822

Query: 217 FADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVF 276
           F              T  P VT+ N     ++V+ V+C DR  LL D+   + D+   + 
Sbjct: 823 F--------------TIPPSVTISNGLSNKFTVIEVECLDRPGLLADMTAVIADLSLDIH 868

Query: 277 HATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASE 324
            A I T GE+    FY+  + G  ++++  +  + Q L+A +  +  E
Sbjct: 869 SARITTFGEKVIDTFYVTDLFGQKVTNDNRQASIAQRLKAVMSEQEDE 916

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Agrobacterium tumefaciens (strain C58 / ATCC 33970) (taxid: 176299)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q2N784|GLND_ERYLH [Protein-PII] uridylyltransferase OS=Erythrobacter litoralis (strain HTCC2594) GN=glnD PE=3 SV=1

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 48/80 (60%)

Query: 23  PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
           PRV+ DN      T+++V++  R  +L    + L +  ++++ A+I++ G    D F+VT
Sbjct: 825 PRVLFDNDASGRFTVIEVNARDRAALLNRLGRALFENQVIVQSAHITAYGERAADTFYVT 884

Query: 83  DLNGNKLTDESVISYIEQSL 102
           DL G K+TDES +  I Q+L
Sbjct: 885 DLTGAKITDESRMDTIRQAL 904

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Erythrobacter litoralis (strain HTCC2594) (taxid: 314225)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q9AC53|GLND_CAUCR [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=glnD PE=3 SV=1

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 79/185 (42%), Gaps = 26/185 (14%)

Query: 121 LTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPI--EDSQQI 177
           +   DR GL +++   ++ L  +VV A+V+T   G+   + YV+D  +G+P   E+ + +
Sbjct: 740 IAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDV-TGAPFGCENPRAL 798

Query: 178 DRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVV 237
            R+   L    KGD       + V       + R      A                P V
Sbjct: 799 RRLADALEAAGKGD------ALAVEPRRGSEQTRAAAFAIA----------------PSV 836

Query: 238 TVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHID 297
           T+ N A    +VV    +DR  LL  +  TL D    +  A I+  GERA   FY++  +
Sbjct: 837 TIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQTTE 896

Query: 298 GTPIS 302
           G  ++
Sbjct: 897 GGKVT 901

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Caulobacter crescentus (strain ATCC 19089 / CB15) (taxid: 190650)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|B8GWX0|GLND_CAUCN [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=glnD PE=3 SV=1

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 79/185 (42%), Gaps = 26/185 (14%)

Query: 121 LTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPI--EDSQQI 177
           +   DR GL +++   ++ L  +VV A+V+T   G+   + YV+D  +G+P   E+ + +
Sbjct: 740 IAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDV-TGAPFGCENPRAL 798

Query: 178 DRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVV 237
            R+   L    KGD       + V       + R      A                P V
Sbjct: 799 RRLADALEAAGKGD------ALAVEPRRGSEQTRAAAFAIA----------------PSV 836

Query: 238 TVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHID 297
           T+ N A    +VV    +DR  LL  +  TL D    +  A I+  GERA   FY++  +
Sbjct: 837 TIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQTTE 896

Query: 298 GTPIS 302
           G  ++
Sbjct: 897 GGKVT 901

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Caulobacter crescentus (strain NA1000 / CB15N) (taxid: 565050)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	444
255537131	442	amino acid binding protein, putative [Ri	0.993	0.997	0.871	0.0
225426651	444	PREDICTED: uncharacterized protein LOC10	0.990	0.990	0.857	0.0
297742666	440	unnamed protein product [Vitis vinifera]	0.990	1.0	0.857	0.0
224074729	442	predicted protein [Populus trichocarpa]	0.993	0.997	0.850	0.0
224124920	442	predicted protein [Populus trichocarpa]	0.993	0.997	0.852	0.0
356540171	441	PREDICTED: Protein-PII uridylyltransfera	0.993	1.0	0.814	0.0
356497179	441	PREDICTED: uncharacterized protein LOC10	0.993	1.0	0.811	0.0
449528978	450	PREDICTED: uncharacterized LOC101205369	0.993	0.98	0.815	0.0
356563282	441	PREDICTED: uncharacterized protein LOC10	0.993	1.0	0.795	0.0
449460443	449	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.993	0.982	0.815	0.0

>gi|255537131|ref|XP_002509632.1| amino acid binding protein, putative [Ricinus communis] gi|223549531|gb|EEF51019.1| amino acid binding protein, putative [Ricinus communis]

 Score =  797 bits (2058), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/442 (87%), Positives = 408/442 (92%), Gaps = 1/442 (0%)

Query: 4   MEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLI 63
           MEW A LDEYEKLVIRM TPRVVIDN VCPTAT+VKVDSAR+HGILLEAVQVLTDLNL I
Sbjct: 1   MEWSAYLDEYEKLVIRMTTPRVVIDNGVCPTATVVKVDSARKHGILLEAVQVLTDLNLSI 60

Query: 64  KKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTG 123
           KKAYISSDGR+FMDVFHVTD+NGNKLTDESVI+YIEQSL TIHYGR++ FNGLTALELTG
Sbjct: 61  KKAYISSDGRWFMDVFHVTDINGNKLTDESVINYIEQSLGTIHYGRTHDFNGLTALELTG 120

Query: 124 TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEAR 183
           TDRVGLLSEVFAVLADLQC VVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQ IDRIEAR
Sbjct: 121 TDRVGLLSEVFAVLADLQCDVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQHIDRIEAR 180

Query: 184 LRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWA 243
           LRNVLKGDNDIRSAK +VSMAVTHTERRLHQMMFADRDYER P+LR S D PVVTVQNW 
Sbjct: 181 LRNVLKGDNDIRSAKTSVSMAVTHTERRLHQMMFADRDYERKPILRFSADSPVVTVQNWV 240

Query: 244 DRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISS 303
           +R YSVVNVQCKDR KLLFDVVCTLTDMEYVVFHATINTAG++AYLEFYI+H DGTPISS
Sbjct: 241 ERGYSVVNVQCKDRMKLLFDVVCTLTDMEYVVFHATINTAGDKAYLEFYIKHTDGTPISS 300

Query: 304 EPERQRVIQCLEAAVGRRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERD 363
           EPERQRVIQCL+AAV RRASEGVRLELC  DRQGLLADVTRTFRENGLNVTRAE+ST   
Sbjct: 301 EPERQRVIQCLQAAVERRASEGVRLELCTPDRQGLLADVTRTFRENGLNVTRAEISTSTK 360

Query: 364 EALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKEL-PMIYHQKGESEEQTVGVGGAV 422
            A N+FYVTD +GNPAD KIIE+VRQ+IGLSNLKVKEL P++YHQ+ E EEQ VGV G V
Sbjct: 361 TATNVFYVTDAIGNPADSKIIESVRQRIGLSNLKVKELPPLMYHQEAEREEQGVGVAGTV 420

Query: 423 LLSLGSLVRRNLYNLGLIRSYS 444
           LLSLGSLVR+NLYNLGLIRSYS
Sbjct: 421 LLSLGSLVRKNLYNLGLIRSYS 442

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426651|ref|XP_002281251.1| PREDICTED: uncharacterized protein LOC100242743 [Vitis vinifera] gi|147794108|emb|CAN62364.1| hypothetical protein VITISV_031924 [Vitis vinifera]

 Score =  788 bits (2035), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/441 (85%), Positives = 413/441 (93%), Gaps = 1/441 (0%)

Query: 4   MEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLI 63
           MEWP CLDEYEKLVIRMNTPRVV+DNAVC T TLVKVDSAR+HGILLEAVQVLTDLNL I
Sbjct: 5   MEWP-CLDEYEKLVIRMNTPRVVVDNAVCATTTLVKVDSARKHGILLEAVQVLTDLNLSI 63

Query: 64  KKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTG 123
           KKAYISSDGR+FMDVFHVTDLNGNKLTDESVI+YIEQSL  IH+ RSNSFNGLTALELTG
Sbjct: 64  KKAYISSDGRWFMDVFHVTDLNGNKLTDESVINYIEQSLGCIHHVRSNSFNGLTALELTG 123

Query: 124 TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEAR 183
           TDR+GLLSEVFAVLADL+C+VVE+K+WTHNGRIASLIYVKDC+SG+PIEDSQ+IDRIE R
Sbjct: 124 TDRLGLLSEVFAVLADLECNVVESKMWTHNGRIASLIYVKDCDSGNPIEDSQKIDRIEGR 183

Query: 184 LRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWA 243
           LRNVLKGDNDIRSAK +VS+AVTHTERRLHQMMFADRDYER P++R +++ P VTVQNW 
Sbjct: 184 LRNVLKGDNDIRSAKTSVSLAVTHTERRLHQMMFADRDYEREPIIRSASESPAVTVQNWV 243

Query: 244 DRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISS 303
           +R YSVVNVQCKDR KLLFDVVCTLTDM+YVVFHATINTAG++AYLEFYIRH DG+PISS
Sbjct: 244 ERGYSVVNVQCKDRRKLLFDVVCTLTDMQYVVFHATINTAGDKAYLEFYIRHTDGSPISS 303

Query: 304 EPERQRVIQCLEAAVGRRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERD 363
           E ERQRVIQCL+AA+ RRASEGVRLELC EDR+GLLADVTRTFRENGLNVTRAE+ST  +
Sbjct: 304 EAERQRVIQCLQAAIERRASEGVRLELCTEDRRGLLADVTRTFRENGLNVTRAEISTTSE 363

Query: 364 EALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKELPMIYHQKGESEEQTVGVGGAVL 423
            ALN+FYVTD MGNPADPKIIEAVRQKIGLSNLKVKELP+I HQ+ E +E TVGVGGAVL
Sbjct: 364 IALNVFYVTDAMGNPADPKIIEAVRQKIGLSNLKVKELPLINHQEAERDEPTVGVGGAVL 423

Query: 424 LSLGSLVRRNLYNLGLIRSYS 444
           LSLGSLVRRNLYNLGLIRS+S
Sbjct: 424 LSLGSLVRRNLYNLGLIRSHS 444

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742666|emb|CBI34815.3| unnamed protein product [Vitis vinifera]

 Score =  787 bits (2033), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/441 (85%), Positives = 413/441 (93%), Gaps = 1/441 (0%)

Query: 4   MEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLI 63
           MEWP CLDEYEKLVIRMNTPRVV+DNAVC T TLVKVDSAR+HGILLEAVQVLTDLNL I
Sbjct: 1   MEWP-CLDEYEKLVIRMNTPRVVVDNAVCATTTLVKVDSARKHGILLEAVQVLTDLNLSI 59

Query: 64  KKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTG 123
           KKAYISSDGR+FMDVFHVTDLNGNKLTDESVI+YIEQSL  IH+ RSNSFNGLTALELTG
Sbjct: 60  KKAYISSDGRWFMDVFHVTDLNGNKLTDESVINYIEQSLGCIHHVRSNSFNGLTALELTG 119

Query: 124 TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEAR 183
           TDR+GLLSEVFAVLADL+C+VVE+K+WTHNGRIASLIYVKDC+SG+PIEDSQ+IDRIE R
Sbjct: 120 TDRLGLLSEVFAVLADLECNVVESKMWTHNGRIASLIYVKDCDSGNPIEDSQKIDRIEGR 179

Query: 184 LRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWA 243
           LRNVLKGDNDIRSAK +VS+AVTHTERRLHQMMFADRDYER P++R +++ P VTVQNW 
Sbjct: 180 LRNVLKGDNDIRSAKTSVSLAVTHTERRLHQMMFADRDYEREPIIRSASESPAVTVQNWV 239

Query: 244 DRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISS 303
           +R YSVVNVQCKDR KLLFDVVCTLTDM+YVVFHATINTAG++AYLEFYIRH DG+PISS
Sbjct: 240 ERGYSVVNVQCKDRRKLLFDVVCTLTDMQYVVFHATINTAGDKAYLEFYIRHTDGSPISS 299

Query: 304 EPERQRVIQCLEAAVGRRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERD 363
           E ERQRVIQCL+AA+ RRASEGVRLELC EDR+GLLADVTRTFRENGLNVTRAE+ST  +
Sbjct: 300 EAERQRVIQCLQAAIERRASEGVRLELCTEDRRGLLADVTRTFRENGLNVTRAEISTTSE 359

Query: 364 EALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKELPMIYHQKGESEEQTVGVGGAVL 423
            ALN+FYVTD MGNPADPKIIEAVRQKIGLSNLKVKELP+I HQ+ E +E TVGVGGAVL
Sbjct: 360 IALNVFYVTDAMGNPADPKIIEAVRQKIGLSNLKVKELPLINHQEAERDEPTVGVGGAVL 419

Query: 424 LSLGSLVRRNLYNLGLIRSYS 444
           LSLGSLVRRNLYNLGLIRS+S
Sbjct: 420 LSLGSLVRRNLYNLGLIRSHS 440

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074729|ref|XP_002304443.1| predicted protein [Populus trichocarpa] gi|222841875|gb|EEE79422.1| predicted protein [Populus trichocarpa]

 Score =  783 bits (2023), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/442 (85%), Positives = 408/442 (92%), Gaps = 1/442 (0%)

Query: 4   MEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLI 63
           MEW ACLDEYEKLVIRM TPRVVIDNAVCP AT+VKVDSAR+HGILLEAVQVLTDLNL I
Sbjct: 1   MEWSACLDEYEKLVIRMTTPRVVIDNAVCPKATVVKVDSARKHGILLEAVQVLTDLNLSI 60

Query: 64  KKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTG 123
           KKAYISSDGR+FMDVFHVTDLNGNKLTD+SVI+YIEQSL TIHYGR    NGLTALELTG
Sbjct: 61  KKAYISSDGRWFMDVFHVTDLNGNKLTDKSVINYIEQSLVTIHYGRKTGSNGLTALELTG 120

Query: 124 TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEAR 183
           TDRVGLLSEVFAVLADLQC+VV+AKVWTHNGRIA+L++VKDCNSGSPIED+QQIDRIEAR
Sbjct: 121 TDRVGLLSEVFAVLADLQCNVVDAKVWTHNGRIAALMFVKDCNSGSPIEDTQQIDRIEAR 180

Query: 184 LRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWA 243
           LRNVLKGDNDIRSAK  VSMAVTHTERRLHQMMFADRDYER P+L+ S D PVVTVQNW 
Sbjct: 181 LRNVLKGDNDIRSAKTMVSMAVTHTERRLHQMMFADRDYERNPILQPSGDSPVVTVQNWV 240

Query: 244 DRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISS 303
           +R YSVVNVQC+DRTKLLFDVVCTLTDMEY+VFHATI T+G+RAYLEFYIRH DGTPISS
Sbjct: 241 ERGYSVVNVQCRDRTKLLFDVVCTLTDMEYIVFHATIKTSGDRAYLEFYIRHTDGTPISS 300

Query: 304 EPERQRVIQCLEAAVGRRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERD 363
           EPERQRVIQCL+AAV RR SEGVRLELC  DRQ LLADVTRTFRENGLNVTRAE+ST RD
Sbjct: 301 EPERQRVIQCLQAAVERRVSEGVRLELCTLDRQCLLADVTRTFRENGLNVTRAEISTTRD 360

Query: 364 EALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKEL-PMIYHQKGESEEQTVGVGGAV 422
            ALN+FYVTD +GN ADPK+IE+VRQKIG+S+LKVKEL P++YHQ+ E E+QT GV G V
Sbjct: 361 MALNVFYVTDAIGNAADPKLIESVRQKIGMSSLKVKELPPLVYHQEAEREDQTAGVAGTV 420

Query: 423 LLSLGSLVRRNLYNLGLIRSYS 444
           LLSLGSLV+RNLY+LGLIRSYS
Sbjct: 421 LLSLGSLVKRNLYHLGLIRSYS 442

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124920|ref|XP_002329846.1| predicted protein [Populus trichocarpa] gi|222871083|gb|EEF08214.1| predicted protein [Populus trichocarpa]

 Score =  780 bits (2014), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/442 (85%), Positives = 406/442 (91%), Gaps = 1/442 (0%)

Query: 4   MEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLI 63
           MEW AC DEYEKLVIRM TPRVVIDNAV   AT+VKVDSAR+H ILLEAVQVLTDLNL I
Sbjct: 1   MEWSACSDEYEKLVIRMTTPRVVIDNAVSSKATVVKVDSARKHRILLEAVQVLTDLNLSI 60

Query: 64  KKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTG 123
           KKAYISSDGR+FMDVFHVTDLNGNKLTDESVI+YIEQSL TIH G++   NGLTALELTG
Sbjct: 61  KKAYISSDGRWFMDVFHVTDLNGNKLTDESVINYIEQSLGTIHPGKTTGSNGLTALELTG 120

Query: 124 TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEAR 183
           TDR+GLLSEVFAVLADLQCSVV+AKVWTHNGRIASL+YVKDCNSGSPIED+Q IDRIEAR
Sbjct: 121 TDRIGLLSEVFAVLADLQCSVVDAKVWTHNGRIASLMYVKDCNSGSPIEDTQHIDRIEAR 180

Query: 184 LRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWA 243
           LRNVLKGDNDIRSAK  VSMAVTHTERRLHQ+MFADRDYER P+L+ S D PVVTVQNW 
Sbjct: 181 LRNVLKGDNDIRSAKTMVSMAVTHTERRLHQVMFADRDYERKPILQPSGDSPVVTVQNWV 240

Query: 244 DRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISS 303
           +R YSVVNVQCKDRTKLLFDVVCTLTDMEY+VFHATINTAG+RAYLEFYIRH DGTPISS
Sbjct: 241 ERGYSVVNVQCKDRTKLLFDVVCTLTDMEYIVFHATINTAGDRAYLEFYIRHTDGTPISS 300

Query: 304 EPERQRVIQCLEAAVGRRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERD 363
           EPERQRVIQCL+AAV RRASEGVRLELC  DRQGLLADVTRTFRENGLNVTRAE+ST  D
Sbjct: 301 EPERQRVIQCLQAAVERRASEGVRLELCTPDRQGLLADVTRTFRENGLNVTRAEISTAGD 360

Query: 364 EALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKEL-PMIYHQKGESEEQTVGVGGAV 422
            ALN+FYVTD +GNPADPK+IE+VRQKIG+SNLKVKEL P+IYHQ+ E E+QT GV G V
Sbjct: 361 MALNVFYVTDAVGNPADPKLIESVRQKIGVSNLKVKELPPLIYHQEAEREDQTAGVAGTV 420

Query: 423 LLSLGSLVRRNLYNLGLIRSYS 444
           LLSLGSLV++NLY+LGLIRSYS
Sbjct: 421 LLSLGSLVKKNLYHLGLIRSYS 442

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540171|ref|XP_003538563.1| PREDICTED: Protein-PII uridylyltransferase [Glycine max]

 Score =  753 bits (1944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/441 (81%), Positives = 401/441 (90%)

Query: 4   MEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLI 63
           MEWPA  DEYEKL+IRM+TPRVVIDN+VC +ATLVKVDSARRHGILL+AVQVLTDLNL I
Sbjct: 1   MEWPASTDEYEKLIIRMSTPRVVIDNSVCSSATLVKVDSARRHGILLDAVQVLTDLNLSI 60

Query: 64  KKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTG 123
           KKAYIS+DG++FMDVFHVTD NGNK+ DESV+ YIEQSL  IHYGR+N  NGLTALELTG
Sbjct: 61  KKAYISADGKWFMDVFHVTDQNGNKIMDESVLKYIEQSLGNIHYGRTNRSNGLTALELTG 120

Query: 124 TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEAR 183
           +DRVGLLSEVFAVLADLQC V +AKVWTHNGRIASLIYVKDC+SGS IEDSQ+I++IE R
Sbjct: 121 SDRVGLLSEVFAVLADLQCDVADAKVWTHNGRIASLIYVKDCSSGSAIEDSQKINKIELR 180

Query: 184 LRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWA 243
           LRNVLKGDNDIRSAKM+VSMAV HTERRLHQ+MF DRDYER P+L+ ++D P+VTVQNW 
Sbjct: 181 LRNVLKGDNDIRSAKMSVSMAVMHTERRLHQLMFVDRDYERTPILKLTSDNPLVTVQNWE 240

Query: 244 DRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISS 303
            R YSVVNVQCKDRTKLLFD+VC LTDMEYVVFHATINT+G+RAYLEFYIRH DGTPISS
Sbjct: 241 GRGYSVVNVQCKDRTKLLFDIVCNLTDMEYVVFHATINTSGDRAYLEFYIRHKDGTPISS 300

Query: 304 EPERQRVIQCLEAAVGRRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERD 363
           EPERQRVIQCL+AAV RRASEGVRLELC EDRQGLLA+V RTFRENGLNVTRAE+ST  +
Sbjct: 301 EPERQRVIQCLKAAVERRASEGVRLELCTEDRQGLLAEVMRTFRENGLNVTRAEISTIGN 360

Query: 364 EALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKELPMIYHQKGESEEQTVGVGGAVL 423
            A NIFYVTD +G PAD KIIE+VRQKIGLSNL+VKELP+I HQ+ E E+Q VG+GGAVL
Sbjct: 361 MATNIFYVTDAIGIPADSKIIESVRQKIGLSNLEVKELPLINHQEAEGEDQAVGIGGAVL 420

Query: 424 LSLGSLVRRNLYNLGLIRSYS 444
           LS+GSL+RRNLY+LGLI+S S
Sbjct: 421 LSIGSLLRRNLYHLGLIKSCS 441

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497179|ref|XP_003517440.1| PREDICTED: uncharacterized protein LOC100780903 [Glycine max]

 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/441 (81%), Positives = 397/441 (90%)

Query: 4   MEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLI 63
           MEWPAC DEYEKL+IRMNTPRVVIDN+V  +ATLVKVDSARRHGILL+AV+VL DLNL I
Sbjct: 1   MEWPACTDEYEKLIIRMNTPRVVIDNSVFSSATLVKVDSARRHGILLDAVEVLADLNLSI 60

Query: 64  KKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTG 123
           KKAYIS+DG++FMDVFHVTD NGNK+ DESV+ YIEQSL  IHYGR+N  NGLTALELTG
Sbjct: 61  KKAYISADGKWFMDVFHVTDQNGNKIIDESVLKYIEQSLGNIHYGRTNLSNGLTALELTG 120

Query: 124 TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEAR 183
           TDRVGLLSEVFAVLADLQC VVE+KVWTHNGRIASLIYVKD +SGS IEDSQ+I++IE R
Sbjct: 121 TDRVGLLSEVFAVLADLQCDVVESKVWTHNGRIASLIYVKDSSSGSAIEDSQKINKIELR 180

Query: 184 LRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWA 243
           LRNVLKGDNDIRSAK++ SMAV HTERRLHQ+MF DRDYER P+L+ ++D   VTVQNW 
Sbjct: 181 LRNVLKGDNDIRSAKISFSMAVMHTERRLHQLMFVDRDYERAPILKLTSDNASVTVQNWE 240

Query: 244 DRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISS 303
            R YSVVNVQCKDRTKLLFD+VC LTDMEYVVFHATINT G+RAYLEFYIRH DGTPISS
Sbjct: 241 GRGYSVVNVQCKDRTKLLFDIVCNLTDMEYVVFHATINTDGDRAYLEFYIRHKDGTPISS 300

Query: 304 EPERQRVIQCLEAAVGRRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERD 363
           EPERQRVIQCL+AAV RRASEGVRLELC EDRQGLLA+V RTFRENGLNVTRAE+ST  +
Sbjct: 301 EPERQRVIQCLKAAVERRASEGVRLELCTEDRQGLLAEVVRTFRENGLNVTRAEISTIGN 360

Query: 364 EALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKELPMIYHQKGESEEQTVGVGGAVL 423
            A NIFYVTD +GNPAD KIIE+VRQKIGLSNL+VKELP+I HQ+ E E+Q VG+GGAVL
Sbjct: 361 MAKNIFYVTDAIGNPADSKIIESVRQKIGLSNLEVKELPLINHQEAEREDQAVGMGGAVL 420

Query: 424 LSLGSLVRRNLYNLGLIRSYS 444
           LS+GSLVRRNLY+LGLI+S S
Sbjct: 421 LSIGSLVRRNLYHLGLIKSCS 441

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449528978|ref|XP_004171478.1| PREDICTED: uncharacterized LOC101205369 [Cucumis sativus]

 Score =  732 bits (1889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/450 (81%), Positives = 390/450 (86%), Gaps = 9/450 (2%)

Query: 4   MEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLI 63
           MEWP+ LDEYEKLVIRMNTPRVVIDN  C TATLVKVDSARR G LLEAVQVLTDLNL I
Sbjct: 1   MEWPSRLDEYEKLVIRMNTPRVVIDNGACSTATLVKVDSARRFGNLLEAVQVLTDLNLSI 60

Query: 64  KKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLT-ALELT 122
           KKAY+SSDGR+FMDVFHVTD NG KLTDESVISY+EQSL T HY R+  FNG T ALELT
Sbjct: 61  KKAYVSSDGRWFMDVFHVTDQNGEKLTDESVISYLEQSLGTTHYRRNEEFNGTTTALELT 120

Query: 123 GTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEA 182
           GTDRVGLLSEVFAVLADLQC VVEAKVWTHNGRIASLIYVKDCNSGSPIED Q+ID I A
Sbjct: 121 GTDRVGLLSEVFAVLADLQCDVVEAKVWTHNGRIASLIYVKDCNSGSPIEDRQKIDTIVA 180

Query: 183 RLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTD-YPVVTVQN 241
           RLR+VLKGDNDIRSAK +VSMAVTHTERRLHQMMFADRDYER P+L+ + D  P VTVQN
Sbjct: 181 RLRSVLKGDNDIRSAKTSVSMAVTHTERRLHQMMFADRDYERKPILKLNADNSPAVTVQN 240

Query: 242 WADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPI 301
            A+R YSVV VQCKDRTKLLFDV+ TLTDM+YVVFHA INTA ERAYLEFYIRH DGTPI
Sbjct: 241 CAERGYSVVCVQCKDRTKLLFDVIFTLTDMQYVVFHANINTAQERAYLEFYIRHSDGTPI 300

Query: 302 SSEPERQRVIQCLEAAVGRRASEGVRLELCMEDRQGLLADVTRTFRENGLNV-------T 354
           SSE ERQRVIQCL+AA+ RRASEGVRLELC EDR GLLADV RTFRENGLNV       T
Sbjct: 301 SSEAERQRVIQCLQAAIQRRASEGVRLELCTEDRPGLLADVMRTFRENGLNVTRAEISTT 360

Query: 355 RAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKELPMIYHQKGESEEQ 414
           RAE+ST RD ALN+FYVTD +GN AD K IE+VRQ+IGLSNLKVKELP  YHQ  E EEQ
Sbjct: 361 RAEISTTRDMALNVFYVTDVVGNVADQKTIESVRQRIGLSNLKVKELPSTYHQTTEREEQ 420

Query: 415 TVGVGGAVLLSLGSLVRRNLYNLGLIRSYS 444
           T GVGGAVL +LGS+VRRNLYNLGLIRS S
Sbjct: 421 TFGVGGAVLFTLGSMVRRNLYNLGLIRSCS 450

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563282|ref|XP_003549893.1| PREDICTED: uncharacterized protein LOC100794729 [Glycine max]

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/441 (79%), Positives = 393/441 (89%)

Query: 4   MEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLI 63
           MEWPAC DEYEKLVIRM+TPRVVIDNAVC TAT+VKVDSAR+HGIL++AVQVL+DLNL I
Sbjct: 1   MEWPACTDEYEKLVIRMSTPRVVIDNAVCSTATIVKVDSARKHGILIDAVQVLSDLNLSI 60

Query: 64  KKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTG 123
           KKAYISSDGR+FMDVFHVTD NGNKLTDESV+SYIEQSL +IH G+++  NGLT LELTG
Sbjct: 61  KKAYISSDGRWFMDVFHVTDQNGNKLTDESVLSYIEQSLGSIHNGKTSHSNGLTILELTG 120

Query: 124 TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEAR 183
           TDRVGLLSEVFAVLA+ QC VV+AKVWTHNGRIASLIYVKD NS +PIEDSQ+I  IEAR
Sbjct: 121 TDRVGLLSEVFAVLAEQQCDVVDAKVWTHNGRIASLIYVKDSNSETPIEDSQRISTIEAR 180

Query: 184 LRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWA 243
           LRNVLKGDNDIR+AK +V+ AV H ERRLHQMM+ DRDY+R P+ + S+D P+VTVQNWA
Sbjct: 181 LRNVLKGDNDIRNAKTSVTNAVLHAERRLHQMMYTDRDYQRNPIFKFSSDTPIVTVQNWA 240

Query: 244 DRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISS 303
           +R YSVVNVQCKDR KLLFDVVC LT+MEYVVFHATI T  ++AYLEFYIRH DGTPISS
Sbjct: 241 ERGYSVVNVQCKDRVKLLFDVVCNLTEMEYVVFHATIKTTIDQAYLEFYIRHKDGTPISS 300

Query: 304 EPERQRVIQCLEAAVGRRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERD 363
           EPER RVIQCL+AAV RRA EGVRLELC EDRQGLLA+V RTFRENGLNVTRAE+ST  D
Sbjct: 301 EPERHRVIQCLQAAVERRAFEGVRLELCTEDRQGLLAEVMRTFRENGLNVTRAEISTIGD 360

Query: 364 EALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKELPMIYHQKGESEEQTVGVGGAVL 423
            A N+FYVTD +G PADPKI+E+VRQK+GLSNLKVKELP++ H+K E E+Q VGVGGAVL
Sbjct: 361 MASNVFYVTDAIGYPADPKIVESVRQKVGLSNLKVKELPLVCHEKAEREDQPVGVGGAVL 420

Query: 424 LSLGSLVRRNLYNLGLIRSYS 444
           L LGSLVRRNLYNLGLI+S S
Sbjct: 421 LCLGSLVRRNLYNLGLIKSCS 441

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460443|ref|XP_004147955.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101205369 [Cucumis sativus]

 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/449 (81%), Positives = 389/449 (86%), Gaps = 8/449 (1%)

Query: 4   MEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLI 63
           MEWP+ LDEYEKLVIRMNTPRVVIDN  C TATLVKVDSARR G LLEAVQVLTDLNL I
Sbjct: 1   MEWPSRLDEYEKLVIRMNTPRVVIDNGACSTATLVKVDSARRFGNLLEAVQVLTDLNLSI 60

Query: 64  KKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLT-ALELT 122
           KKAY+SSDGR+FMDVFHVTD NG KLTDESVISY+EQSL T HY R+  FNG T ALELT
Sbjct: 61  KKAYVSSDGRWFMDVFHVTDQNGEKLTDESVISYLEQSLGTTHYRRNEEFNGTTTALELT 120

Query: 123 GTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEA 182
           GTDRVGLLSEVFAVLADLQC VVEAKVWTHNGRIASLIYVKDCNSGSPIED Q+ID I A
Sbjct: 121 GTDRVGLLSEVFAVLADLQCDVVEAKVWTHNGRIASLIYVKDCNSGSPIEDRQKIDTIVA 180

Query: 183 RLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTD-YPVVTVQN 241
           RLR+VLKGDNDIRSAK +VSMAVTHTERRLHQMMFADRDYER P+L+ + D  P VTVQN
Sbjct: 181 RLRSVLKGDNDIRSAKTSVSMAVTHTERRLHQMMFADRDYERKPILKLNADNSPAVTVQN 240

Query: 242 WADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPI 301
            A+R YSVV VQCKDRTKLLFDV+ TLTDM+YVVFHA INTA ERAYLEFYIRH DGTPI
Sbjct: 241 CAERGYSVVCVQCKDRTKLLFDVIFTLTDMQYVVFHANINTAQERAYLEFYIRHSDGTPI 300

Query: 302 SSEPERQRVIQCLEAAVGRRASEGVRLELCMEDRQGLLA------DVTRTFRENGLNVTR 355
           SSE ERQRVIQCL+AA+ RRASEGVRLELC EDR GLLA      DV RTFRENGLNVTR
Sbjct: 301 SSEAERQRVIQCLQAAIQRRASEGVRLELCTEDRPGLLADVMRTFDVMRTFRENGLNVTR 360

Query: 356 AEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKELPMIYHQKGESEEQT 415
           AE+ST R  ALN+FYVTD +GN AD K IE+VRQ+IGLSNLKVKELP  YHQ  E EEQT
Sbjct: 361 AEISTTRHMALNVFYVTDVVGNVADQKTIESVRQRIGLSNLKVKELPSTYHQTTEREEQT 420

Query: 416 VGVGGAVLLSLGSLVRRNLYNLGLIRSYS 444
            GVGGAVL +LGS+VRRNLYNLGLIRS S
Sbjct: 421 FGVGGAVLFTLGSMVRRNLYNLGLIRSCS 449

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	444
TAIR|locus:2034630	441	ACR8 "AT1G12420" [Arabidopsis	0.975	0.981	0.697	6.1e-158
TAIR|locus:2132609	449	ACR7 "ACT domain repeat 7" [Ar	0.984	0.973	0.623	2.9e-142
TAIR|locus:2033223	455	ACR4 "ACT domain repeat 4" [Ar	0.970	0.947	0.540	3e-117
TAIR|locus:2078678	433	ACR6 "ACT domain repeat 6" [Ar	0.876	0.898	0.556	6.1e-110
TAIR|locus:2145482	500	AT5G25320 [Arabidopsis thalian	0.436	0.388	0.449	3e-89
TAIR|locus:2152094	477	ACR1 "ACT domain repeat 1" [Ar	0.545	0.507	0.383	1.1e-80
TAIR|locus:2044289	456	ACR5 "ACT domain repeat 5" [Ar	0.716	0.697	0.5	2.1e-75
TAIR|locus:2025317	453	ACR3 "ACT domain repeat 3" [Ar	0.639	0.626	0.508	9.3e-75
TAIR|locus:2039782	411	ACR9 "ACT domain repeats 9" [A	0.637	0.688	0.226	1.6e-10
TAIR|locus:2057936	410	ACR10 "ACT domain repeats 10"	0.623	0.675	0.212	2.8e-06

TAIR|locus:2034630 ACR8 "AT1G12420" [Arabidopsis thaliana (taxid:3702)]

 Score = 1539 (546.8 bits), Expect = 6.1e-158, P = 6.1e-158
 Identities = 305/437 (69%), Positives = 356/437 (81%)

Query:    10 LDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS 69
             LDEYEKLVIRMNTPRVVIDN VC +AT+VKVDS+RR+GILLEAVQ+LTDLNL IKKAYIS
Sbjct:     7 LDEYEKLVIRMNTPRVVIDNGVCSSATIVKVDSSRRNGILLEAVQILTDLNLSIKKAYIS 66

Query:    70 SDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTGTDRVGL 129
             SDG + MDVFHVTDLNGNKL D+SV+ YIEQS+ET++YG +   NGLTALELTGTDR+GL
Sbjct:    67 SDGTWNMDVFHVTDLNGNKLNDQSVLRYIEQSIETVYYGENIEVNGLTALELTGTDRIGL 126

Query:   130 LSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK 189
             LSE+FAVL+DL C VV+AK+WTHNGR+AS+IY+KDC SG+PI DS +I +IE RL+NVL 
Sbjct:   127 LSEMFAVLSDLNCDVVDAKLWTHNGRVASVIYLKDCISGAPILDSHRISKIEGRLKNVLN 186

Query:   190 GDNDIRSAKMT-VSM-AVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSY 247
             GDND+ SA  T V++ ++ H ERRLHQ+MF DRDYER       +   VVTVQNWA+R Y
Sbjct:   187 GDNDVNSAAKTCVTVDSMMHIERRLHQLMFEDRDYERRSKKHERSPMVVVTVQNWAERGY 246

Query:   248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPER 307
             SVVNV C+DRTKLLFDVVCTLTDMEY VFHATINTA ++A+LEFYIRH DG+PISSE ER
Sbjct:   247 SVVNVHCRDRTKLLFDVVCTLTDMEYAVFHATINTAEDQAHLEFYIRHKDGSPISSEAER 306

Query:   308 QRVIQCLEAAVGRRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALN 367
             QRVIQCLEAAV RRA EGVRLEL   D+QGLLA+VTRTFRENGLNVTR E+ST  D A N
Sbjct:   307 QRVIQCLEAAVERRALEGVRLELRHPDKQGLLAEVTRTFRENGLNVTRTEISTSSDMATN 366

Query:   368 IFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKELPMIYHQKGESEEQTXXXXXXXXXXXX 427
             IFYVTD  G+  D K+IE+VR+KIGL  L+VKE+P +YH+KG+ EEQ             
Sbjct:   367 IFYVTDANGDEPDFKLIESVREKIGLECLRVKEMPTMYHKKGDGEEQQQTKAVLVSLGSL 426

Query:   428 XXXRRNLYNLGLIRSYS 444
                 RNL+N GLI+S S
Sbjct:   427 VW--RNLFNFGLIKSCS 441

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

TAIR|locus:2132609 ACR7 "ACT domain repeat 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1391 (494.7 bits), Expect = 2.9e-142, P = 2.9e-142
 Identities = 281/451 (62%), Positives = 342/451 (75%)

Query:     4 MEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLI 63
             ME   C +EYEKLV+RMN PRVVIDN VCP +T+VK+DSAR  GILLE+VQ+LTD+NL I
Sbjct:     1 MELSDCSNEYEKLVVRMNMPRVVIDNGVCPNSTVVKIDSARSPGILLESVQLLTDMNLWI 60

Query:    64 KKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTG 123
             KKAYISSDG++ MDVFHV+DLNG+KLTDE++I YIE+S+ET HY ++  + GLTALELTG
Sbjct:    61 KKAYISSDGKWNMDVFHVSDLNGDKLTDENLIRYIEKSIETSHYCKTEGYTGLTALELTG 120

Query:   124 TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIE-DSQQIDRIEA 182
             TDRVGLLSEVFAVLADL+C VVEAK WTHNGRIAS+IYVKD NSG+PI+ DS ++ R+E 
Sbjct:   121 TDRVGLLSEVFAVLADLECDVVEAKAWTHNGRIASMIYVKDGNSGTPIDGDSDRVQRVEG 180

Query:   183 RLRNVLKGDNDIRSAKMT-VSMAV-THTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQ 240
             +LRN+LK D+  ++   T VS    TH ERRLHQ MF DRDYE+   +  S   P+V+VQ
Sbjct:   181 QLRNLLKADDGYQNDTRTCVSYGGNTHMERRLHQRMFMDRDYEKKFDIEKS---PIVSVQ 237

Query:   241 NWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTP 300
             N   R YSVVN+QCKDR KLLFDVVCTLTDM Y+VFHA I T GE A+LEFY+RH DG P
Sbjct:   238 NLPKRGYSVVNLQCKDRMKLLFDVVCTLTDMAYIVFHAAIRTVGETAFLEFYVRHSDGHP 297

Query:   301 ISSEPERQRVIQCLEAAVGRRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVST 360
             +SSEPERQR+IQCL+AA+ RR  +GVRLELC  DR GLLA+VTR  RENGLN+ RAE+ST
Sbjct:   298 VSSEPERQRLIQCLQAAIERRTVKGVRLELCTADRPGLLAEVTRILRENGLNIARAEIST 357

Query:   361 ERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKE-LPMIYHQKGESEE------ 413
             +   A N+FYVTD  GN  DP+II+++R+KIG+ +L VKE  P+   +  E E+      
Sbjct:   358 KDSIARNVFYVTDANGNLIDPEIIKSIREKIGIDDLSVKEPFPISCREAVEKEQHIEPQD 417

Query:   414 -QTXXXXXXXXXXXXXXXRRNLYNLGLIRSY 443
              Q                 RNLY+LGLI+SY
Sbjct:   418 HQGRYGGGTVLVSLGSLVMRNLYHLGLIKSY 448

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=ISS

TAIR|locus:2033223 ACR4 "ACT domain repeat 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1155 (411.6 bits), Expect = 3.0e-117, P = 3.0e-117
 Identities = 241/446 (54%), Positives = 302/446 (67%)

Query:    11 DEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS 70
             +EYEKL+ RMN PRVVIDN  C  AT+++VDSA  +GILLE VQ+LTDLNL I KAYISS
Sbjct:    13 NEYEKLIRRMNPPRVVIDNDSCKKATVIRVDSANEYGILLEVVQILTDLNLTITKAYISS 72

Query:    71 DGRFFMDVFHVTDLNGNKLTDESVISYIEQSL--ETIHYGRSNSFNGL-----TALELTG 123
             DG +FMDVF+VTD +GNK+TDE V+ YI++SL  E        S   +     T +ELTG
Sbjct:    73 DGGWFMDVFNVTDQDGNKVTDEVVLDYIQKSLGPEACFSTSMRSVGVIPSTDSTVIELTG 132

Query:   124 TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEAR 183
              DR GLLSE+ AVL  L+CSV+ A++WTHN R A+++ V D  +G  I D +++ RI+  
Sbjct:   133 CDRPGLLSELSAVLTHLKCSVLNAEIWTHNTRAAAVMQVTDDLTGCGISDPERLSRIKNL 192

Query:   184 LRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPV-----LRHSTDYPVVT 238
             LRNVLKG N  R AK  VS    HT+RRLHQMMF DRDYE   V     ++     P V 
Sbjct:   193 LRNVLKGSNTPREAKTVVSHGEVHTDRRLHQMMFEDRDYEHRLVDDDSSIQDERQRPDVC 252

Query:   239 VQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDG 298
             V NW D+ YSVV V+CKDR KLLFD VCTLTDM+YVVFH +++T G  A+ E+Y+RHIDG
Sbjct:   253 VDNWLDKDYSVVTVRCKDRPKLLFDTVCTLTDMQYVVFHGSVDTEGTEAFQEYYVRHIDG 312

Query:   299 TPISSEPERQRVIQCLEAAVGRRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEV 358
             +P+ SE E+QRVIQCLEAA+ RR SEG++LELC  DR GLL++VTR FREN L VTRAEV
Sbjct:   313 SPVKSEAEKQRVIQCLEAAIKRRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEV 372

Query:   359 STERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKELPMIYHQKGESEEQTXXX 418
              T+  +ALN FYV+D  G   D K I+++RQ IG + LKVK  P    Q+ +S       
Sbjct:   373 KTKGGKALNTFYVSDASGYSIDAKTIDSIRQTIGQTILKVKNNPQEQQQRQKSPSHESPT 432

Query:   419 XXXXXXXXXXXXRRNLYNLGLIRSYS 444
                          ++  N GL+RSYS
Sbjct:   433 RFLFGGLFKS---KSFVNFGLVRSYS 455

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

TAIR|locus:2078678 ACR6 "ACT domain repeat 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1086 (387.4 bits), Expect = 6.1e-110, P = 6.1e-110
 Identities = 222/399 (55%), Positives = 289/399 (72%)

Query:    11 DEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS 70
             DEY KL+ RMN PRVVIDN     AT+++VDS  +HG LLE VQVLTD+NL+IKKAYISS
Sbjct:     4 DEYAKLIRRMNPPRVVIDNNASDDATVIQVDSVNKHGTLLEVVQVLTDMNLVIKKAYISS 63

Query:    71 DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLET-----IHYGRSN----SFNGLTALEL 121
             DG +FMDVF V D +GNK+ D  V+ YI++ +E+     I   RS+      +  T++EL
Sbjct:    64 DGGWFMDVFKVIDQDGNKIRDTQVLDYIQKRIESNAGWFIPPLRSSVGVMPTDEYTSIEL 123

Query:   122 TGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIE 181
              GTDR GLLSEV AVL DL C+VV A++WTHN R A++I+V D ++ S I D  ++  I+
Sbjct:   124 AGTDRPGLLSEVSAVLTDLHCNVVNAEIWTHNTRAAAVIHVTDNSTHSAITDPIRLSTIK 183

Query:   182 ARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQN 241
               L NV++ ++  R+AK   S + TH ERRLHQ+MF DRDYE +   R S   P VT+ N
Sbjct:   184 ELLCNVVRTNSGSRAAKTVFSCSDTHRERRLHQIMFDDRDYEGVKRARTSASRPSVTLMN 243

Query:   242 WADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPI 301
               ++ Y+VV ++ KDR KL+FDVVCTLTDM+YVVFH  ++T    AY EFYIRH+DG PI
Sbjct:   244 -IEKDYTVVTMRSKDRPKLVFDVVCTLTDMQYVVFHGMVSTEPVEAYQEFYIRHVDGLPI 302

Query:   302 SSEPERQRVIQCLEAAVGRRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTE 361
             +SE E++RVIQCLEAA+ RRASEG+ LEL  EDR GLL+D+TRTFREN L + RAE+ST 
Sbjct:   303 NSEAEQERVIQCLEAAIERRASEGLELELSAEDRVGLLSDITRTFRENSLTIVRAEISTR 362

Query:   362 RDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKE 400
               +A + FYVTD  GNP + KI+E++RQ+IG+S LKVK+
Sbjct:   363 EGKAKDTFYVTDVTGNPVESKIVESIRQQIGVSKLKVKK 401

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0019408 "dolichol biosynthetic process" evidence=RCA

TAIR|locus:2145482 AT5G25320 [Arabidopsis thaliana (taxid:3702)]

 Score = 481 (174.4 bits), Expect = 3.0e-89, Sum P(2) = 3.0e-89
 Identities = 94/209 (44%), Positives = 143/209 (68%)

Query:   206 THTERRLHQMMFADRDYER-------MPVLRHSTDY--------PVVTVQNWADRSYSVV 250
             ++ ERRLHQ+M + RD++        + +L    +Y         +V++ N  +R YS+V
Sbjct:   240 SNMERRLHQLMLSVRDFDEPFCEPSSLSLLSSKLEYCDHKERKTTIVSIGNCEERGYSIV 299

Query:   251 NVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRV 310
              V+ KDR +L+FD +CTL DM+YV+FHA + + G  A+ E++IRHIDG  +++E E++RV
Sbjct:   300 TVKSKDRRRLMFDTICTLVDMQYVIFHAALRSDGADAFQEYFIRHIDGRALNTEGEKERV 359

Query:   311 IQCLEAAVGRRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFY 370
             I+CLEAA+ RR  EGV+LELC E+R GLL+D+TR  RENGL V RA+V T+  ++LN FY
Sbjct:   360 IKCLEAAIERRVCEGVKLELCAENRVGLLSDITRVLRENGLTVVRADVETQGQKSLNAFY 419

Query:   371 VTDEMGNPADPKIIEAVRQKIGLSNLKVK 399
             V D  GN  D + +E+V++++   +L+VK
Sbjct:   420 VRDISGNKIDMEFVESVKKEMRPIHLEVK 448

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

TAIR|locus:2152094 ACR1 "ACT domain repeat 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 1.1e-80, Sum P(2) = 1.1e-80
 Identities = 100/261 (38%), Positives = 156/261 (59%)

Query:   170 PIEDSQQIDRIEARLR-NVLKGDND---IRSAKMT-VSMAVTHTERRLHQMMFADRDYE- 223
             PI  +Q  D ++  +  + + GD     +R  +   V +   HTERRLH++M+ + DYE 
Sbjct:   190 PIRKAQVKDHLDTVMEAHHIVGDVSHVVVRVVEAKGVPVGWAHTERRLHELMYGEGDYEN 249

Query:   224 ---------RMPVL-RHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEY 273
                      R   L R   +   VT++  A   YS+VNV+C+DR KLLFD VC L ++++
Sbjct:   250 CFDCDCFGDRCDALWRGRCERIHVTIE--ACNGYSMVNVKCRDRPKLLFDTVCALKELQF 307

Query:   274 VVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVRLELCME 333
             VVFHA     G  A  E++IR  +G  + +E +R+R+  CL AA+ RRAS+G++LE+  E
Sbjct:   308 VVFHAVAGAKGSTAEQEYFIRKKNGGTLETEGQRERLRHCLVAAISRRASQGLKLEIRTE 367

Query:   334 DRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGL 393
             ++ GLL+DVTR  RENGL++TRAE+ T+ + A+  FYVTD  G    P  +EAV +++G 
Sbjct:   368 NKMGLLSDVTRVVRENGLSITRAEMCTQGEIAVGSFYVTDVNGGETGPSEVEAVVRELGG 427

Query:   394 SNLK-VKELPMIYHQKGESEE 413
             + +  VK + M+  + G + +
Sbjct:   428 AVVSAVKGVGMMPRRIGSTSD 448

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISS

TAIR|locus:2044289 ACR5 "ACT domain repeat 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
 Identities = 168/336 (50%), Positives = 213/336 (63%)

Query:   117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQ 176
             T +ELTGTDR GLLSE+ AVL DLQC+VV A++WTH  + A+++ V D  + S I D ++
Sbjct:   129 TVVELTGTDRPGLLSELCAVLMDLQCNVVNAEIWTHRAKAAAVLQVTDEETCSAITDPER 188

Query:   177 IDRIEARLRNVLKGDND---IRSAKMTVSMAV--THTERRLHQMMFADRDYERMPVLRHS 231
             + +I   L  VL G +     R  K TVS A+  THT+R+LHQ+MFADRDY+        
Sbjct:   189 LSKIRKLLGYVLTGGSSGRRFREPKTTVSSALNETHTDRKLHQLMFADRDYDEWENNVDD 248

Query:   232 TD-----YPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGER 286
              D      P V V N  D  YS+V ++CKDR KLLFD V TLTDM YVV HA+I+  G +
Sbjct:   249 EDKCGRVIPDVDVSNLHDLDYSIVMIKCKDRPKLLFDTVFTLTDMNYVVSHASIDAEGPQ 308

Query:   287 AYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVRLELCMEDRQGLLADVTRTF 346
             AY E+YIRH DG+P+ SE ERQRVI+CL+AA+ RR SEG++LELC  DR GLL+DVTR F
Sbjct:   309 AYQEYYIRHTDGSPVKSEAERQRVIKCLKAAIQRRVSEGLKLELCTSDRVGLLSDVTRIF 368

Query:   347 RENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKELPMIYH 406
             REN L VTRAEV T+ D+ALN FYV D  G   D K IE++RQ IG + L+VK       
Sbjct:   369 RENSLTVTRAEVKTKGDKALNTFYVRDASGYQVDTKTIESIRQVIGQTILQVKG------ 422

Query:   407 QKGESEEQTXXXXXXXXXXXXXXXRRNLYNLGLIRS 442
               G ++ +                 R+  N GLIRS
Sbjct:   423 --GNTDAKPSPQDSPTGFLFGVFKSRSFVNFGLIRS 456

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

TAIR|locus:2025317 ACR3 "ACT domain repeat 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
 Identities = 147/289 (50%), Positives = 208/289 (71%)

Query:   111 NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSP 170
             +S    T++E+   DR GLLSEV AVLADL  +VV A+ WTHN RIA ++YV D  +   
Sbjct:   123 HSLGDHTSIEIIARDRPGLLSEVSAVLADLNINVVAAEAWTHNRRIACVLYVNDNATSRA 182

Query:   171 IEDSQQIDRIEARLRNVLKG--DNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVL 228
             ++D +++  +E +L NVL+G  + D + A+ ++S+  TH +RRLHQM FADRDYE +  L
Sbjct:   183 VDDPERLSSMEEQLNNVLRGCEEQDEKFARTSLSIGSTHVDRRLHQMFFADRDYEAVTKL 242

Query:   229 RHSTDY---PVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGE 285
               S      P +TV++  ++ YSV+NV C+DR KL+FD+VCTLTDM+Y+VFHATI+++G 
Sbjct:   243 DDSASCGFEPKITVEHCEEKGYSVINVSCEDRPKLMFDIVCTLTDMQYIVFHATISSSGS 302

Query:   286 RAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVRLELCMEDRQGLLADVTRT 345
              A  E++IRH DG  + +E E++RV++CLEAA+ RR SEG  LELC +DR GLL++VTR 
Sbjct:   303 HASQEYFIRHKDGCTLDTEGEKERVVKCLEAAIHRRVSEGWSLELCAKDRVGLLSEVTRI 362

Query:   346 FRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLS 394
              RE+GL+V+RA V+T  ++A+N+FYV D  GNP D K IEA+R +IG S
Sbjct:   363 LREHGLSVSRAGVTTVGEQAVNVFYVKDASGNPVDVKTIEALRGEIGHS 411

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008773 "[protein-PII

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=TAS

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2039782 ACR9 "ACT domain repeats 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 69/305 (22%), Positives = 147/305 (48%)

Query:    20 MNTPRVVID-NAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDV 78
             +N   V+I+   +    T+V V+     G+     +++ +  L I +A  S+DGR+   V
Sbjct:     4 LNDDAVLIEPGKISGDPTVVTVNCPDESGLGSTLCRIILEFGLSITRADFSTDGRWCYIV 63

Query:    79 FHVT-DLNGNKLTDESV----ISYIEQSLETIHYGRSNSFN---GLTALELTGTDRVGLL 130
             F VT D++  K+  +S+    +S     L + ++   ++ +    L  L+    DR GLL
Sbjct:    64 FWVTPDISSPKIDWDSLKNRLLSACPSCLGSFYFCLQSNVSKPPSLYLLKFFCRDRKGLL 123

Query:   131 SEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK 189
              +V  VL +L+ ++   KV T  +GR+  + ++ D      +   Q+  +    L  VL 
Sbjct:   124 HDVTKVLTELEFTIQRVKVMTTPDGRVLDMFFITDAMD--LLHTKQRQTKTCDHLTAVL- 180

Query:   190 GDNDIRSAKMTVSMAVTHTERRLHQM--MFADRDY--ERMPVLRHSTDYPVVTVQNWADR 245
             G++ + S ++ ++     + +R   +  + AD  +  +   +   S++  V+TV N    
Sbjct:   181 GEHGV-SCELELAGPELESVQRFSSLPPLAADELFGPDGFDISGSSSNKAVLTVDNQLSP 239

Query:   246 SYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAY--LEFYIRHIDGTPISS 303
             +++++ ++C D+  L +D++ T  D +  + +   ++   + Y  LE ++R  DG  I  
Sbjct:   240 AHTLLQIRCVDQKGLFYDILRTSKDCDVHIAYGRFSSK-VKGYRNLELFVRGTDGNKIM- 297

Query:   304 EPERQ 308
             +P+ Q
Sbjct:   298 DPKHQ 302

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2057936 ACR10 "ACT domain repeats 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 63/297 (21%), Positives = 130/297 (43%)

Query:    36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT-------DLNGNK 88
             +++ ++   + G+  +  ++L    L I +  +S+DG++   VF V        +L   +
Sbjct:    21 SVITINCPDKTGLGCDLCRILLFFGLNIVRGDVSTDGKWCYLVFWVIGKPNTRWNLLKMR 80

Query:    89 LTDESVISYIEQSLETIHYGRSNS----FNGLTALELTGTDRVGLLSEVFAVLADLQCSV 144
             L + S        +   +   S S       L  L+L  +DR GLL +V  VL  L+ ++
Sbjct:    81 LVEASPSFSWAFGISRCYLSDSESQPPKLPDLFLLKLACSDRTGLLYDVTEVLYKLEINI 140

Query:   145 VEAKV-WTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSM 203
              + K+  T +G++  L +V D      +   ++ + +   LR+ + GD+ I      V  
Sbjct:   141 EKVKISTTPDGKVMDLFFVTDTRE--LLGTVKRRNEVYEYLRDAI-GDSMISYDIELVGP 197

Query:   204 AVT--HTERRLHQMMFA-DRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKL 260
              +T   T   + + +F+ D   E    L H++    + V N    +++++++ C+D   L
Sbjct:   198 EITACSTSSSVAETLFSSDVSGEHSSGL-HTSSNVSIAVDNSLSSAHTLIHITCQDHKGL 256

Query:   261 LFDVVCTLTDMEYVVFHATINTA-GERAYLEFYIRHIDGTPISSEPERQRVIQCLEA 316
             L+D++ T  D    + +       G+   ++ +I   DG  I    +   +I  L A
Sbjct:   257 LYDIMRTFKDFNIQISYGRFTIKLGKNCEIDLFIVQSDGRKILDSSKLNALITRLRA 313

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	444
cd04897	75	cd04897, ACT_ACR_3, ACT domain-containing protein	1e-39
cd04895	72	cd04895, ACT_ACR_1, ACT domain-containing protein	2e-38
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	2e-35
cd04925	74	cd04925, ACT_ACR_2, ACT domain-containing protein	4e-34
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	9e-22
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	5e-19
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	4e-18
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	6e-16
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	2e-14
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	3e-13
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	3e-12
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	3e-12
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	1e-09
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	3e-09
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	4e-09
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	5e-09
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	6e-09
pfam01842	66	pfam01842, ACT, ACT domain	3e-08
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	9e-08
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	3e-07
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	1e-06
PRK05007	884	PRK05007, PRK05007, PII uridylyl-transferase; Prov	1e-06
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	2e-06
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	2e-06
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	3e-06
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	3e-06
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	6e-06
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	7e-06
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	7e-06
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	8e-06
PRK01759	854	PRK01759, glnD, PII uridylyl-transferase; Provisio	1e-05
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	2e-05
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	2e-05
cd04900	73	cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU	2e-05
cd04900	73	cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU	6e-05
cd04927	76	cd04927, ACT_ACR-like_2, Second ACT domain, of a n	6e-05
pfam01842	66	pfam01842, ACT, ACT domain	7e-05
PRK04374	869	PRK04374, PRK04374, PII uridylyl-transferase; Prov	7e-05
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	1e-04
cd04900	73	cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU	2e-04
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	3e-04
cd04883	72	cd04883, ACT_AcuB, C-terminal ACT domain of the Ba	3e-04
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	5e-04
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	5e-04
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	0.001
cd04876	71	cd04876, ACT_RelA-SpoT, ACT domain found C-termina	0.002
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	0.003

>gnl|CDD|153169 cd04897, ACT_ACR_3, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  136 bits (344), Expect = 1e-39
 Identities = 55/75 (73%), Positives = 65/75 (86%)

Query: 247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPE 306
           YSVV VQC+DR KLLFDVVCTLTDM+YVVFHATI+T G+ A+ E+YIRH DG  +S+E E
Sbjct: 1   YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGE 60

Query: 307 RQRVIQCLEAAVGRR 321
           RQRVI+CLEAA+ RR
Sbjct: 61  RQRVIKCLEAAIERR 75

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 75

>gnl|CDD|153167 cd04895, ACT_ACR_1, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  133 bits (336), Expect = 2e-38
 Identities = 55/72 (76%), Positives = 62/72 (86%)

Query: 35  ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESV 94
            TLVKVDSAR+ GILLEAVQVLTDL+L I KAYISSDG +FMDVFHVTD  GNKLTD+S+
Sbjct: 1   CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSL 60

Query: 95  ISYIEQSLETIH 106
           I+YIE+SL T  
Sbjct: 61  IAYIEKSLGTSR 72

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  125 bits (315), Expect = 2e-35
 Identities = 52/72 (72%), Positives = 59/72 (81%)

Query: 325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKII 384
           GVRLEL  EDR GLL+DVTR FRENGL VTRAE+ST+ D A+N+FYVTD  GNP DPK I
Sbjct: 1   GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTI 60

Query: 385 EAVRQKIGLSNL 396
           EAVRQ+IG + L
Sbjct: 61  EAVRQEIGPACL 72

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|153197 cd04925, ACT_ACR_2, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  121 bits (306), Expect = 4e-34
 Identities = 50/74 (67%), Positives = 62/74 (83%)

Query: 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQ 176
           TA+ELTGTDR GLLSEVFAVLADL C+VVEA+ WTHNGR+A +IYV+D  +G+PI+D  +
Sbjct: 1   TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIR 60

Query: 177 IDRIEARLRNVLKG 190
           +  IE RL NVL+G
Sbjct: 61  LASIEDRLDNVLRG 74

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 74

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 88.3 bits (220), Expect = 9e-22
 Identities = 33/69 (47%), Positives = 44/69 (63%)

Query: 326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIE 385
             LEL   DR GLLADVTR   E GLN+  A+++T  + A ++FYVTD  G P DP+  E
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQE 60

Query: 386 AVRQKIGLS 394
           A+R  +G +
Sbjct: 61  ALRAALGEA 69

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 80.2 bits (199), Expect = 5e-19
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQ 176
           T LELT  DR GLL++V  VLA+L  ++  AK+ T   R   + YV D   G P+ D ++
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTD-ADGQPL-DPER 58

Query: 177 IDRIEARLRNVL 188
            + + A L   L
Sbjct: 59  QEALRAALGEAL 70

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 78.0 bits (193), Expect = 4e-18
 Identities = 28/64 (43%), Positives = 41/64 (64%)

Query: 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAV 387
           +E+   DR GLLAD+TR   + GLN+  A +ST  + AL++FYVTD  G P DP+ I  +
Sbjct: 3   VEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIARL 62

Query: 388 RQKI 391
            + +
Sbjct: 63  EEAL 66

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 71.8 bits (177), Expect = 6e-16
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPER 307
           +VV V   DR  LL D+   L D+   +  A I+T GERA   FY+   DG P+  E   
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPE-RI 59

Query: 308 QRVIQCLEAA 317
            R+ + LE A
Sbjct: 60  ARLEEALEDA 69

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 67.2 bits (165), Expect = 2e-14
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQ 176
           T +E+   DR GLL+++  VLADL  ++ +A++ T   R   + YV D + G P+ D ++
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTD-SDGRPL-DPER 58

Query: 177 IDRIEARLRNVL 188
           I R+E  L + L
Sbjct: 59  IARLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 64.5 bits (158), Expect = 3e-13
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 36  TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVI 95
           T+V+V +  R G+L +  +VL DL L I  A IS+ G   +DVF+VTD +G  L D   I
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPL-DPERI 59

Query: 96  SYIEQSLET 104
           + +E++LE 
Sbjct: 60  ARLEEALED 68

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 68.2 bits (167), Expect = 3e-12
 Identities = 55/195 (28%), Positives = 88/195 (45%), Gaps = 23/195 (11%)

Query: 125 DRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPIEDSQQIDRIEAR 183
           D+ GL ++V   LA L  SV +A+V T  +G       V+D   GSP          E  
Sbjct: 677 DQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLF-GSPPAA-------ERV 728

Query: 184 LRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWA 243
            + +L+G  D+ +        ++    R  +             L+H    P VT+ N A
Sbjct: 729 FQELLQGLVDVLAGLAKDPDTISARRARRRR-------------LQHFAVPPRVTILNTA 775

Query: 244 DRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISS 303
            R  +++ V+  DR  LL  V  TL ++   +  A I T GE+A   FY+  + G  ++ 
Sbjct: 776 SRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTD 835

Query: 304 EPERQRVIQCLEAAV 318
           E E QR+++ L A+V
Sbjct: 836 E-EEQRLLEVLAASV 849

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 68.4 bits (168), Expect = 3e-12
 Identities = 51/219 (23%), Positives = 94/219 (42%), Gaps = 26/219 (11%)

Query: 112 SFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSP 170
              G+T + +   D  GL S +    A    ++V+A+++T  +GR     +++D   G  
Sbjct: 728 PARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQD-AFGRD 786

Query: 171 IEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRH 230
            ++ +++ R+   + + L G                  E RL + + A R   +    R 
Sbjct: 787 EDEPRRLARLAKAIEDALSG------------------EVRLPEAL-AKRTKPK-KRARA 826

Query: 231 STDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLE 290
               P VT+ N A   ++V+ V  +DR  LL+D+   L+D+   +  A I T GERA   
Sbjct: 827 FHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDV 886

Query: 291 FYIRHIDGTPISSEPE----RQRVIQCLEAAVGRRASEG 325
           FY+  + G  I++E      R+ ++  L        +  
Sbjct: 887 FYVTDLFGLKITNEARQAAIRRALLAALAEGEAEARAAR 925

Length = 931

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 60.3 bits (147), Expect = 1e-09
 Identities = 33/80 (41%), Positives = 52/80 (65%)

Query: 23  PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
           PRV IDN      T+++V+   R G+L +  + L+DLNL I  A+I++ G   +DVF+VT
Sbjct: 831 PRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVT 890

Query: 83  DLNGNKLTDESVISYIEQSL 102
           DL G K+T+E+  + I ++L
Sbjct: 891 DLFGLKITNEARQAAIRRAL 910

Length = 931

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 51/195 (26%), Positives = 82/195 (42%), Gaps = 27/195 (13%)

Query: 125 DRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPIEDSQQIDRIEAR 183
           DR  L + V A L+    S+V+A+++T  +G       V + + G P+E+    DR  A 
Sbjct: 693 DRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPD-GFPVEE----DRRAAL 747

Query: 184 LRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWA 243
              +++    + S K           RR+               LRH    P VT+   A
Sbjct: 748 RGELIE---ALLSGKAQPP-----RRRRIP------------RKLRHFPIPPRVTILPTA 787

Query: 244 DRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISS 303
               +V+ V+  DR  LL  +     D+   +  A I T GER    F +   DG  +++
Sbjct: 788 SNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQALNA 847

Query: 304 EPERQRVIQCLEAAV 318
           E  RQ ++Q L  A+
Sbjct: 848 E-LRQSLLQRLLEAL 861

Length = 867

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 58.5 bits (142), Expect = 4e-09
 Identities = 42/197 (21%), Positives = 78/197 (39%), Gaps = 29/197 (14%)

Query: 227 VLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGE- 285
           ++RH    P+V +        + V V   DR +L   V   L+     +  A I T  + 
Sbjct: 664 LVRHDLGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDG 723

Query: 286 RAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVR------------------ 327
            A   F +   DG P+  +       + +EA +  +A    R                  
Sbjct: 724 YALDTFIVLEPDGFPVEEDRRAALRGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTI 783

Query: 328 ----------LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGN 377
                     LE+   DR GLLA +   F + GL++  A+++T  +   ++F VTD  G 
Sbjct: 784 LPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQ 843

Query: 378 PADPKIIEAVRQKIGLS 394
             + ++ +++ Q++  +
Sbjct: 844 ALNAELRQSLLQRLLEA 860

Length = 867

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 58.2 bits (141), Expect = 5e-09
 Identities = 44/182 (24%), Positives = 71/182 (39%), Gaps = 33/182 (18%)

Query: 231 STDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA-GERAYL 289
           S+  P+  +        + V +   D+  L   V   L  +   V  A +NT     A  
Sbjct: 652 SSGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALD 711

Query: 290 EFYIRHIDGTPISSEPERQRVIQCLEAAVGRRA--------------------------- 322
            F ++ + G+P ++E   Q ++Q L   +   A                           
Sbjct: 712 TFVVQDLFGSPPAAERVFQELLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTI 771

Query: 323 -SEGVRLELCME----DRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGN 377
            +   R    ME    DR GLLA V RT  E GL++  A+++T  ++A ++FYVTD  G 
Sbjct: 772 LNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGL 831

Query: 378 PA 379
             
Sbjct: 832 KL 833

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 57.8 bits (140), Expect = 6e-09
 Identities = 43/201 (21%), Positives = 82/201 (40%), Gaps = 24/201 (11%)

Query: 113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPI- 171
           F G T + +   D+    +   A +  L  ++ +A++ T + +     Y+   + G PI 
Sbjct: 701 FEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIG 760

Query: 172 EDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHS 231
           ++  +I++I   L   L+  +D  +    +        R+L    F  +           
Sbjct: 761 DNPARIEQIREGLTEALRNPDDYPT---IIQ---RRVPRQLKHFAFPTQ----------- 803

Query: 232 TDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEF 291
                VT+ N A R  +V+ +   DR  LL  +     + +  + +A I T GER    F
Sbjct: 804 -----VTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVF 858

Query: 292 YIRHIDGTPISSEPERQRVIQ 312
           +I   D  P+ S+P+    +Q
Sbjct: 859 FITDADNQPL-SDPQLCSRLQ 878

Length = 895

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 49.7 bits (119), Expect = 3e-08
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIE 385
             LE+ + DR GLLA+V     + G+N+     ST  D+A  I ++   +        +E
Sbjct: 1   TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKA-GIVFIVVVVDEEDLEAALE 59

Query: 386 AVRQKIG 392
           A+++ +G
Sbjct: 60  ALKKLLG 66

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 54.2 bits (131), Expect = 9e-08
 Identities = 52/192 (27%), Positives = 72/192 (37%), Gaps = 25/192 (13%)

Query: 125 DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARL 184
           DR GLLS+   VLA  +  V  A V +H+G  A L +V     GSP         +   L
Sbjct: 608 DRRGLLSKAAGVLALHRLRVRSASVRSHDGV-AVLEFVVSPRFGSPP----DAALLRQDL 662

Query: 185 RNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWAD 244
           R  L GD D+ +              R       +     +PV R     P V   + A 
Sbjct: 663 RRALDGDLDVLAR----------LAAR-------EAAAAAVPV-RRPAAPPRVLWLDGAS 704

Query: 245 RSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSE 304
              +V+ V+  DR  LL  +   L      V  A + T G      FY+    G P++  
Sbjct: 705 PDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLA-- 762

Query: 305 PERQRVIQCLEA 316
             R  V Q + A
Sbjct: 763 DARAAVEQAVLA 774

Length = 774

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 31/71 (43%), Positives = 42/71 (59%)

Query: 22  TPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHV 81
            PRV I N     AT+++V +  R G+L    + L +L L I+ A I++ G    DVF+V
Sbjct: 766 PPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYV 825

Query: 82  TDLNGNKLTDE 92
           TDL G KLTDE
Sbjct: 826 TDLFGLKLTDE 836

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 46/204 (22%), Positives = 86/204 (42%), Gaps = 41/204 (20%)

Query: 227 VLRHSTD-YPVVTVQNWADR---SYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINT 282
           +L+H  D  P+V ++    R     + + +   D+       V  +  +   +  A I T
Sbjct: 680 ILQHPDDGGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIIT 739

Query: 283 AGERAYLE-FYIRHIDGTPISSEPER-QRVIQCLEAA----------VGRRASEGVR--- 327
           +  +  L+ + +   DG PI   P R +++ + L  A          + RR    ++   
Sbjct: 740 SSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNPDDYPTIIQRRVPRQLKHFA 799

Query: 328 -----------------LELCMEDRQGLLADVTRTFRENGLNVTRAEVST--ERDEALNI 368
                            LE+   DR GLLA + R F E  L++  A+++T  ER E  ++
Sbjct: 800 FPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVE--DV 857

Query: 369 FYVTDEMGNP-ADPKIIEAVRQKI 391
           F++TD    P +DP++   ++  I
Sbjct: 858 FFITDADNQPLSDPQLCSRLQDAI 881

Length = 895

>gnl|CDD|235329 PRK05007, PRK05007, PII uridylyl-transferase; Provisional

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 37/198 (18%)

Query: 227 VLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGER 286
           +L+H  D P+V +   A R  + + +   DR  L   V   L      V  A I T+ + 
Sbjct: 681 LLQHDLDKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDG 740

Query: 287 AYLE-FYIRHIDGTPISSEPER-QRVIQCLEAAVG---------RRASEGVR-------- 327
             ++ F +   DG+P+S   +R Q + + LE A+          RR    +R        
Sbjct: 741 MAMDTFIVLEPDGSPLS--QDRHQVIRKALEQALTQSSPQPPKPRRLPAKLRHFNVPTEV 798

Query: 328 ------------LELCMEDRQGLLADVTRTFRENGLNVTRAEVST--ERDEALNIFYVTD 373
                       +EL   D+ GLLA V + F + G+++  A ++T  ER E L  F +  
Sbjct: 799 SFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDL--FILAT 856

Query: 374 EMGNPADPKIIEAVRQKI 391
                 + ++ + +RQ++
Sbjct: 857 ADRRALNEELQQELRQRL 874

Length = 884

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 44.8 bits (107), Expect = 2e-06
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPER 307
           +V+ +   DR  LL DV   L ++   +  A I T GERA   FY+   DG P+  E  +
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPE-RQ 59

Query: 308 QRVIQCLEAAV 318
           + +   L  A+
Sbjct: 60  EALRAALGEAL 70

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVST-ERDEALNIFYVTDEMGNPADPKIIEA 386
           L +   DR GLLA V     E G+N+T  E  T       +IF V D  G+    K++EA
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGDLE--KLLEA 58

Query: 387 VR 388
           + 
Sbjct: 59  LE 60

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 49.5 bits (119), Expect = 3e-06
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 8/59 (13%)

Query: 334 DRQGLLADVTRTFRENGLNVTRAEVST--ERDEALNIFYVTDEMGNPADPKIIEAVRQK 390
           DR GLL D+TR   +  LN+  A ++T  ER  A+++FYVTD  G     KI    RQ 
Sbjct: 852 DRPGLLYDLTRALSDLNLNIASAHIATYGER--AVDVFYVTDLFGL----KITNEARQA 904

Length = 931

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 49.6 bits (119), Expect = 3e-06
 Identities = 43/175 (24%), Positives = 63/175 (36%), Gaps = 30/175 (17%)

Query: 235 PVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIR 294
            V      AD     V V   DR  LL      L      V  A++ +    A LEF + 
Sbjct: 587 GVHVEIAPADPHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVS 646

Query: 295 HIDGTPISSEPERQRVIQCLE------AAVGRRASEGVR--------------------- 327
              G+P  +   RQ + + L+      A +  R +                         
Sbjct: 647 PRFGSPPDAALLRQDLRRALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPD 706

Query: 328 ---LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPA 379
              LE+   DR GLLA + R     G++V  A V+T   + +++FYVT   G P 
Sbjct: 707 ATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPL 761

Length = 774

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 48.3 bits (116), Expect = 6e-06
 Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 4/96 (4%)

Query: 104 TIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVK 163
           TI    SN F   T +E+ G DR GLL ++   L+DL  ++  A + T+  R   + YV 
Sbjct: 834 TIDNEASNRF---TVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVT 890

Query: 164 DCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRSAKM 199
           D   G  I +  +   I   L   L        A  
Sbjct: 891 D-LFGLKITNEARQAAIRRALLAALAEGEAEARAAR 925

Length = 931

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 43.2 bits (103), Expect = 7e-06
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 36  TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVI 95
           T++++ +  R G+L +  +VL +L L I  A I++ G    DVF+VTD +G  L  E   
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQE 60

Query: 96  SYIEQSLET 104
           + +  +L  
Sbjct: 61  A-LRAALGE 68

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 48.1 bits (115), Expect = 7e-06
 Identities = 36/161 (22%), Positives = 62/161 (38%), Gaps = 29/161 (18%)

Query: 59  LNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSL-ETIHYG--------- 108
           L+++  + + + DG   +D F V + +G    +E   + +   L E +  G         
Sbjct: 710 LSIVDAQIFTTRDGYA-LDTFIVLEPDG-FPVEEDRRAALRGELIEALLSGKAQPPRRRR 767

Query: 109 ---RSNSF-------------NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH 152
              +   F             N  T LE+   DR GLL+ +  V ADL  S+  AK+ T 
Sbjct: 768 IPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTF 827

Query: 153 NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDND 193
             R+  +  V D   G  +    +   ++  L  +L  D  
Sbjct: 828 GERVEDVFIVTDA-DGQALNAELRQSLLQRLLEALLPNDEG 867

Length = 867

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 46/197 (23%), Positives = 72/197 (36%), Gaps = 34/197 (17%)

Query: 23  PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYI--SSDGRFFMDVFH 80
           P  +ID       T V + +  + G+  +    L  L+L +  A +  + DG    D F 
Sbjct: 656 PLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVAL-DTFV 714

Query: 81  VTDLNGNKLTDESVISYIEQSLETIHYG----------------RSNSF----------- 113
           V DL G+    E V   + Q L  +  G                R   F           
Sbjct: 715 VQDLFGSPPAAERVFQELLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNT 774

Query: 114 --NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPI 171
                T +E+   DR GLL+ V   L +L  S+  AK+ T   +   + YV D   G  +
Sbjct: 775 ASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDL-FGLKL 833

Query: 172 EDSQQIDRIEARLRNVL 188
            D ++  R+   L   +
Sbjct: 834 TDEEE-QRLLEVLAASV 849

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|234980 PRK01759, glnD, PII uridylyl-transferase; Provisional

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 46/190 (24%), Positives = 85/190 (44%), Gaps = 29/190 (15%)

Query: 235 PVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLE-FYI 293
            +V + N   R  + + + C+D+  L   VV T+   +  +  A I T+ +   L+ F +
Sbjct: 665 LLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIV 724

Query: 294 RHIDGTPISSEPERQ---RVIQCL--EAAVGRRASEG-----------VR---------- 327
             ++G  +  +  RQ    + + L           E            VR          
Sbjct: 725 TELNGKLLEFDRRRQLEQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQT 784

Query: 328 -LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEA 386
            +EL   DR GLLA V++ F E  LN+  A+++T  ++A + F +T++ G   D +  +A
Sbjct: 785 EMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEERKA 844

Query: 387 VRQKIGLSNL 396
           ++ ++ LSNL
Sbjct: 845 LKSRL-LSNL 853

Length = 854

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 43/196 (21%), Positives = 78/196 (39%), Gaps = 40/196 (20%)

Query: 35  ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYI-SSDGRFFMDVFHVTDLNGNKLTDES 93
            T + + +  +H      V  +  LNL I  A I +S  +F +D + V D +G  + D  
Sbjct: 704 GTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNP 763

Query: 94  V-ISYIEQSLE------------------------------TIHYGRSNSFNGLTALELT 122
             I  I + L                               TI    +++   +T LE+ 
Sbjct: 764 ARIEQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTIS---NDAQRPVTVLEII 820

Query: 123 GTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEA 182
             DR GLL+ +  +  +   S+  AK+ T   R+  + ++ D +   P+ D Q    + +
Sbjct: 821 APDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDAD-NQPLSDPQ----LCS 875

Query: 183 RLRNVLKGDNDIRSAK 198
           RL++ +    D R+ K
Sbjct: 876 RLQDAICEQLDARNEK 891

Length = 895

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 7/67 (10%)

Query: 119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQID 178
           L ++G DR GLL++V +VLA+   ++   +  T      + I++        ++    ++
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIV-------VDGDGDLE 53

Query: 179 RIEARLR 185
           ++   L 
Sbjct: 54  KLLEALE 60

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 331 CMEDRQGLLADVTRTFRENGLNVTRAEVSTERD-EALNIFYVTDEMGNP-ADPKIIEAVR 388
              DR GL A +     + GLN+  A + T RD  AL+ F V D  G P  + + +  +R
Sbjct: 7   YTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIR 66

Query: 389 QKI 391
           + +
Sbjct: 67  EAL 69

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 40.9 bits (97), Expect = 6e-05
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 35  ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYI--SSDGRFFMDVFHVTDLNGNKLTDE 92
            T V + +  R G+       L  L L I  A I  + DG + +D F V D +G  + + 
Sbjct: 1   GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDG-YALDTFVVLDPDGEPIGER 59

Query: 93  SVISYIEQSLE 103
             ++ I ++LE
Sbjct: 60  ERLARIREALE 70

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|153199 cd04927, ACT_ACR-like_2, Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 40.9 bits (96), Expect = 6e-05
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERD-EALNIFYVTDEM 375
           L+L   DR+GLL DVT    E  L + R +VST  D   L++F++TD  
Sbjct: 3   LKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAR 51

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 76

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 40.4 bits (95), Expect = 7e-05
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 7/72 (9%)

Query: 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQ 176
           T LE+   DR GLL+EVF  LAD   ++      T   +   +  V        + D + 
Sbjct: 1   TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVV-------VVDEED 53

Query: 177 IDRIEARLRNVL 188
           ++     L+ +L
Sbjct: 54  LEAALEALKKLL 65

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|179839 PRK04374, PRK04374, PII uridylyl-transferase; Provisional

 Score = 45.0 bits (106), Expect = 7e-05
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 8/81 (9%)

Query: 311 IQCLEAAVGRRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFY 370
           ++  E+A GRR     R+ L   DR GLLADV    R   L V  A ++T  + A + F 
Sbjct: 786 VEFSESAGGRRT----RISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQ 841

Query: 371 VTDEMGNPADPKIIEAVRQKI 391
           +TDE   P    + E+ RQ +
Sbjct: 842 ITDEHDRP----LSESARQAL 858

Length = 869

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQI 177
            LEL   DRVGLLS+V  V  +   +V  A++ T      ++ YV D N G+P+ D + I
Sbjct: 3   RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDAN-GNPV-DPKTI 60

Query: 178 DRIEARLR 185
           + +   + 
Sbjct: 61  EAVRQEIG 68

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 125 DRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPIEDSQQIDRIEAR 183
           DR GL + +   L  L  ++++A+++T  +G       V D   G PI + +++ RI   
Sbjct: 10  DRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLD-PDGEPIGERERLARIREA 68

Query: 184 LRNVL 188
           L + L
Sbjct: 69  LEDAL 73

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 28/83 (33%), Positives = 41/83 (49%)

Query: 23  PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
           PRV I        T+++V +  R G+L     V  DL L +  A I++ G    DVF VT
Sbjct: 779 PRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVT 838

Query: 83  DLNGNKLTDESVISYIEQSLETI 105
           D +G  L  E   S +++ LE +
Sbjct: 839 DADGQALNAELRQSLLQRLLEAL 861

Length = 867

>gnl|CDD|153155 cd04883, ACT_AcuB, C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKII 384
             ++E+ + DR G LAD+   F++ G+N+    V   ++E   I     +  NP    II
Sbjct: 1   SSQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPR--PII 58

Query: 385 EAVRQK 390
           E +R+ 
Sbjct: 59  EDLRRA 64

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 45  RHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLET 104
           R G+L +  +V  +  L + +A IS+ G   ++VF+VTD NGN   D   I  + Q +  
Sbjct: 11  RVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNP-VDPKTIEAVRQEIGP 69

Query: 105 IH 106
             
Sbjct: 70  AC 71

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 34/124 (27%), Positives = 48/124 (38%), Gaps = 11/124 (8%)

Query: 285 ERAYLEFYIRHIDGTPIS----SEPERQRVIQCLEAAVGRRASEGVRLELCMEDRQGLLA 340
            RAY ++++R      I+    S          L    G R S G  + +   D+ GL A
Sbjct: 625 LRAYDDYFLRFTHK-EIAWHAESLRRALSSGGPLALIDGTRPSGGTEVFIYAPDQPGLFA 683

Query: 341 DVTRTFRENGLNVTRAEVSTERDE-ALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVK 399
            V        L+V  A+V+T +D  AL+ F V D  G+P       A R    L    V 
Sbjct: 684 KVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSP-----PAAERVFQELLQGLVD 738

Query: 400 ELPM 403
            L  
Sbjct: 739 VLAG 742

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 19/80 (23%), Positives = 42/80 (52%)

Query: 23  PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
            +V I N      T++++ +  R G+L    ++  + +L ++ A I++ G    DVF +T
Sbjct: 802 TQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFIT 861

Query: 83  DLNGNKLTDESVISYIEQSL 102
           D +   L+D  + S ++ ++
Sbjct: 862 DADNQPLSDPQLCSRLQDAI 881

Length = 895

>gnl|CDD|153148 cd04876, ACT_RelA-SpoT, ACT domain found C-terminal of the RelA/SpoT domains

 Score = 36.3 bits (85), Expect = 0.002
 Identities = 15/72 (20%), Positives = 36/72 (50%), Gaps = 12/72 (16%)

Query: 119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASL---IYVKDCNSGSPIEDSQ 175
           + +   DR GLL+++  V+A+ + +++     T +  +A++   + V+         D +
Sbjct: 1   IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR---------DLE 51

Query: 176 QIDRIEARLRNV 187
            + RI  +LR +
Sbjct: 52  HLARIMRKLRQI 63

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes in E. coli, a bifunctional Rel/Spo protein has been discovered in most gram-positive organisms studied so far. These bifunctional Rel/Spo homologs (rsh) appear to modulate (p)ppGpp levels through two distinct active sites that are controlled by a reciprocal regulatory mechanism ensuring inverse coupling of opposing activities. In studies with the Streptococcus equisimilis Rel/Spo homolog, the C-terminal domain appears to be involved in this reciprocal regulation of the two opposing catalytic activities present in the N-terminal domain, ensuring that both synthesis and degradation activities are not coinduced. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 71

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 16/65 (24%), Positives = 27/65 (41%)

Query: 322 ASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADP 381
               V + +   DR+GLL+        + L V  A V +    A+  F V+   G+P D 
Sbjct: 596 DPHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDA 655

Query: 382 KIIEA 386
            ++  
Sbjct: 656 ALLRQ 660

Length = 774

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	444
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.96
PRK05007	884	PII uridylyl-transferase; Provisional	99.95
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.95
PRK05007	884	PII uridylyl-transferase; Provisional	99.95
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.95
PRK04374	869	PII uridylyl-transferase; Provisional	99.93
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.93
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.93
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.93
PRK03059	856	PII uridylyl-transferase; Provisional	99.93
PRK05092	931	PII uridylyl-transferase; Provisional	99.93
PRK03381	774	PII uridylyl-transferase; Provisional	99.92
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.91
PRK04374	869	PII uridylyl-transferase; Provisional	99.91
PRK03059	856	PII uridylyl-transferase; Provisional	99.91
PRK05092	931	PII uridylyl-transferase; Provisional	99.9
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.9
PRK03381	774	PII uridylyl-transferase; Provisional	99.9
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.84
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.79
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.78
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.74
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.71
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.67
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.67
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.65
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.62
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.59
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.58
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.57
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.55
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.53
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.49
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.39
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.33
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.32
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.3
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.27
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.25
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.22
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.21
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.13
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.92
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.91
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	98.73
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.62
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.57
COG4747	142	ACT domain-containing protein [General function pr	98.56
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.41
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.41
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.39
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.31
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	98.28
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.27
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.27
COG4747	142	ACT domain-containing protein [General function pr	98.03
PRK07431	587	aspartate kinase; Provisional	98.02
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	98.02
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	97.96
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	97.96
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.94
PRK00194	90	hypothetical protein; Validated	97.93
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.9
PRK00194	90	hypothetical protein; Validated	97.88
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	97.87
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.76
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.7
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.65
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.53
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.52
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.49
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.41
COG3830	90	ACT domain-containing protein [Signal transduction	97.4
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.39
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.38
COG3830	90	ACT domain-containing protein [Signal transduction	97.37
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.26
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.23
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	97.21
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	97.17
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.16
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.13
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	97.11
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	97.11
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	97.07
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.05
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	97.02
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	96.95
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	96.95
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.94
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	96.93
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	96.92
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	96.9
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	96.89
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.87
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.84
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.84
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	96.83
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.82
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	96.81
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	96.79
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	96.78
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.71
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.71
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	96.7
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.62
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.61
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.6
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.56
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.54
PRK07431	587	aspartate kinase; Provisional	96.53
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.53
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.51
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	96.47
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	96.47
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.46
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	96.41
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.31
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.28
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	96.28
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.25
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	96.15
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.1
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	95.98
PRK08577	136	hypothetical protein; Provisional	95.97
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	95.96
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	95.92
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	95.87
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	95.84
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	95.84
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	95.83
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	95.82
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	95.8
PRK08577	136	hypothetical protein; Provisional	95.75
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	95.75
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	95.72
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	95.7
cd02116	60	ACT ACT domains are commonly involved in specifica	95.7
PRK07334	403	threonine dehydratase; Provisional	95.6
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	95.58
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	95.45
PRK04435	147	hypothetical protein; Provisional	95.36
cd02116	60	ACT ACT domains are commonly involved in specifica	95.14
PRK06635	404	aspartate kinase; Reviewed	94.97
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	94.94
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	94.92
PRK04435	147	hypothetical protein; Provisional	94.9
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	94.83
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	94.54
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	94.52
PRK11899	279	prephenate dehydratase; Provisional	94.41
PRK07334	403	threonine dehydratase; Provisional	94.38
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	94.38
PRK09181	475	aspartate kinase; Validated	94.23
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	93.9
PRK06291	465	aspartate kinase; Provisional	93.73
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	93.6
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	93.57
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	93.56
PRK08210	403	aspartate kinase I; Reviewed	93.56
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	93.46
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	93.32
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	93.3
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	93.21
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	93.2
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	93.17
PRK06635	404	aspartate kinase; Reviewed	93.13
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	92.76
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	92.69
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	92.49
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	92.11
COG1707	218	ACT domain-containing protein [General function pr	92.03
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	91.99
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	91.96
PRK06291	465	aspartate kinase; Provisional	91.89
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	91.86
PRK08210	403	aspartate kinase I; Reviewed	91.79
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	91.78
PRK09034	454	aspartate kinase; Reviewed	91.77
COG1707	218	ACT domain-containing protein [General function pr	91.34
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	91.09
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	90.81
PRK09034	454	aspartate kinase; Reviewed	90.78
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	90.74
PRK06382	406	threonine dehydratase; Provisional	90.68
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	90.47
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	90.25
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	90.1
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	90.07
PRK14630	143	hypothetical protein; Provisional	89.82
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	89.75
PRK06349	426	homoserine dehydrogenase; Provisional	89.59
PRK14646	155	hypothetical protein; Provisional	89.4
PRK09181	475	aspartate kinase; Validated	89.37
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	89.3
PLN02551	521	aspartokinase	89.08
PRK08818	370	prephenate dehydrogenase; Provisional	88.62
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	88.62
PRK14634	155	hypothetical protein; Provisional	88.6
PLN02317	382	arogenate dehydratase	88.57
PRK06382	406	threonine dehydratase; Provisional	88.54
PRK14636	176	hypothetical protein; Provisional	88.18
PLN02551	521	aspartokinase	87.67
PRK06545	359	prephenate dehydrogenase; Validated	87.62
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	87.43
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	87.26
PRK14645	154	hypothetical protein; Provisional	87.26
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	87.12
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	87.02
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	86.81
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	86.11
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	85.89
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	85.68
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	85.34
PRK08198	404	threonine dehydratase; Provisional	85.29
PRK06349	426	homoserine dehydrogenase; Provisional	85.04
PRK12483	521	threonine dehydratase; Reviewed	84.91
PRK06545	359	prephenate dehydrogenase; Validated	84.74
PRK14637	151	hypothetical protein; Provisional	84.27
PRK09224	504	threonine dehydratase; Reviewed	84.18
PRK11898	283	prephenate dehydratase; Provisional	84.18
PRK12483	521	threonine dehydratase; Reviewed	84.12
PRK08818	370	prephenate dehydrogenase; Provisional	83.96
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	83.95
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	83.69
PRK09084	448	aspartate kinase III; Validated	82.88
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	82.8
TIGR01270	464	Trp_5_monoox tryptophan 5-monooxygenase, tetrameri	82.69
PRK14640	152	hypothetical protein; Provisional	82.51
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	82.36
TIGR01268	436	Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetra	80.91
PRK14639	140	hypothetical protein; Provisional	80.63
PRK11899	279	prephenate dehydratase; Provisional	80.4

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.96  E-value=1.9e-27  Score=265.35  Aligned_cols=163  Identities=25%  Similarity=0.373  Sum_probs=147.5

Q ss_pred             CCCCEEEEEecCCCCeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEe-cCCEEEEEEEEEeCCCCCCCCHHHHHHH
Q 013389          232 TDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINT-AGERAYLEFYIRHIDGTPISSEPERQRV  310 (444)
Q Consensus       232 ~~~~~V~v~~~~~~~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T-~g~~a~d~F~V~~~~g~~l~~~~~~~~l  310 (444)
                      ..+|.|.+++.++.++|+|+|+++||||||++|+++|+.+|+||++|+|.| .+|++.|+|||++.+|.++. ++++++|
T Consensus       662 ~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~-~~~~~~l  740 (854)
T PRK01759        662 RGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLE-FDRRRQL  740 (854)
T ss_pred             CCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCC-HHHHHHH
Confidence            357888899999999999999999999999999999999999999999988 78999999999999999985 5688999


Q ss_pred             HHHHHHHhccC--------C--------------------CCceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC
Q 013389          311 IQCLEAAVGRR--------A--------------------SEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER  362 (444)
Q Consensus       311 ~~~L~~al~rr--------~--------------------~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g  362 (444)
                      ++.|.++|..+        .                    ...++|||.|.|||||||+|+++|.+.|++|+.|+|+|.|
T Consensus       741 ~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~g  820 (854)
T PRK01759        741 EQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIG  820 (854)
T ss_pred             HHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccC
Confidence            99999887411        0                    0147999999999999999999999999999999999999


Q ss_pred             ceEEEEEEEEcCCCCCCChHHHHHHHHHHhhcc
Q 013389          363 DEALNIFYVTDEMGNPADPKIIEAVRQKIGLSN  395 (444)
Q Consensus       363 ~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~  395 (444)
                      ++|+|+|||+|..|.|++++..++|+++|.+++
T Consensus       821 erv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l  853 (854)
T PRK01759        821 EKAEDFFILTNQQGQALDEEERKALKSRLLSNL  853 (854)
T ss_pred             ceEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence            999999999999999998766699999998754

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.95  E-value=1.9e-27  Score=266.12  Aligned_cols=162  Identities=24%  Similarity=0.335  Sum_probs=148.3

Q ss_pred             CCCEEEEEecCCCCeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecC-CEEEEEEEEEeCCCCCCCCHHHHHHHH
Q 013389          233 DYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAG-ERAYLEFYIRHIDGTPISSEPERQRVI  311 (444)
Q Consensus       233 ~~~~V~v~~~~~~~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~  311 (444)
                      .+|.|.+++.++.++|+|+|+++||||||++|+++|+.+|+||++|+|+|.+ |++.|+|+|++.+|.++. ++++++|+
T Consensus       687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~-~~~~~~I~  765 (884)
T PRK05007        687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLS-QDRHQVIR  765 (884)
T ss_pred             CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCC-HHHHHHHH
Confidence            5788889999999999999999999999999999999999999999999875 599999999999999885 56889999


Q ss_pred             HHHHHHhccC---------C--------------------CCceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC
Q 013389          312 QCLEAAVGRR---------A--------------------SEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER  362 (444)
Q Consensus       312 ~~L~~al~rr---------~--------------------~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g  362 (444)
                      ++|.++|.++         .                    +..++|||.|.|||||||+|+++|.++|++|+.|+|+|.|
T Consensus       766 ~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~g  845 (884)
T PRK05007        766 KALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIG  845 (884)
T ss_pred             HHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccC
Confidence            9999988421         0                    1147899999999999999999999999999999999999


Q ss_pred             ceEEEEEEEEcCCCCCCChHHHHHHHHHHhhcc
Q 013389          363 DEALNIFYVTDEMGNPADPKIIEAVRQKIGLSN  395 (444)
Q Consensus       363 ~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~  395 (444)
                      ++|+|+|||+|..|.|++++.+++|+++|.+++
T Consensus       846 era~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l  878 (884)
T PRK05007        846 ERVEDLFILATADRRALNEELQQELRQRLTEAL  878 (884)
T ss_pred             ceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHH
Confidence            999999999999999999888899999999866

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.95  E-value=4.6e-27  Score=262.23  Aligned_cols=181  Identities=19%  Similarity=0.278  Sum_probs=156.3

Q ss_pred             CCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEe-eCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhc
Q 013389          111 NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK  189 (444)
Q Consensus       111 ~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T-~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~  189 (444)
                      +++.++|+|+|+++||||||++|+++|+.+|+||.+|+|.| .+|++.|+|||+++ +|.++ +++++++|++.|.++|.
T Consensus       672 ~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~-~g~~~-~~~~~~~l~~~L~~aL~  749 (854)
T PRK01759        672 RFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTEL-NGKLL-EFDRRRQLEQALTKALN  749 (854)
T ss_pred             cCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCC-CCCCC-CHHHHHHHHHHHHHHHc
Confidence            45668999999999999999999999999999999999998 68999999999995 78888 57899999999999999


Q ss_pred             CCCcccccchhhcccccchhHHhhhhhccccccccccccCCCCCCCEEEEEecCCCCeEEEEEEccCCccHHHHHHHHHH
Q 013389          190 GDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLT  269 (444)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DRpGLL~~i~~~L~  269 (444)
                      ++....   .       .. ++..+.    +         ....+|.|.|+|..+..+|+|+|.++||||||++|+++|.
T Consensus       750 ~~~~~~---~-------~~-~~~~~~----~---------~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~  805 (854)
T PRK01759        750 TNKLKK---L-------NL-EENHKL----Q---------HFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFS  805 (854)
T ss_pred             CCCCcc---h-------hc-cccccc----c---------CCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHH
Confidence            854211   0       00 010010    1         1236799999999999999999999999999999999999


Q ss_pred             hCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHh
Q 013389          270 DMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAV  318 (444)
Q Consensus       270 ~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al  318 (444)
                      ++|++|+.|+|+|.|+++.|+|||++.+|.+++++ +++.|+++|.++|
T Consensus       806 ~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~-~~~~l~~~L~~~l  853 (854)
T PRK01759        806 ELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEE-ERKALKSRLLSNL  853 (854)
T ss_pred             HCCCEEEEEEEcccCceEEEEEEEECCCCCcCChH-HHHHHHHHHHHHh
Confidence            99999999999999999999999999999999876 4599999998776

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.95  E-value=2.1e-26  Score=257.74  Aligned_cols=183  Identities=23%  Similarity=0.232  Sum_probs=156.6

Q ss_pred             CCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee-CCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhc
Q 013389          111 NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK  189 (444)
Q Consensus       111 ~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~-~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~  189 (444)
                      .++.++|+|+|+++||||||++||++|+.+|+||.+|+|+|. +|++.|+|||+++ .|.++ +++++++|++.|.++|.
T Consensus       696 ~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~-~g~~~-~~~~~~~I~~~L~~aL~  773 (884)
T PRK05007        696 QATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEP-DGSPL-SQDRHQVIRKALEQALT  773 (884)
T ss_pred             cCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECC-CCCCC-CHHHHHHHHHHHHHHHc
Confidence            445679999999999999999999999999999999999986 5699999999995 78887 56899999999999998


Q ss_pred             CCCcccccchhhcccccchhHHhhhhhccccccccccccCCCCCCCEEEEEecCCCCeEEEEEEccCCccHHHHHHHHHH
Q 013389          190 GDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLT  269 (444)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DRpGLL~~i~~~L~  269 (444)
                      +.....   . .   ....+++.       +         ....+|.|.|+|..+..+|+|+|.++||||||++|+++|.
T Consensus       774 ~~~~~~---~-~---~~~~~~~~-------~---------~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~  830 (884)
T PRK05007        774 QSSPQP---P-K---PRRLPAKL-------R---------HFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFA  830 (884)
T ss_pred             CCCCCc---c-c---cccccccc-------C---------CCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHH
Confidence            853211   0 0   00011111       1         2246799999999999999999999999999999999999


Q ss_pred             hCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhc
Q 013389          270 DMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVG  319 (444)
Q Consensus       270 ~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~  319 (444)
                      ++|++|+.|+|.|.|+++.|+|||++.+|.+++ +++++.|++.|.++|.
T Consensus       831 ~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~-~~~~~~l~~~L~~~l~  879 (884)
T PRK05007        831 DLGISLHGARITTIGERVEDLFILATADRRALN-EELQQELRQRLTEALN  879 (884)
T ss_pred             HCCcEEEEEEEeccCceEEEEEEEEcCCCCcCC-HHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999998 5588999999988874

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.95  E-value=3.6e-26  Score=255.98  Aligned_cols=184  Identities=22%  Similarity=0.321  Sum_probs=157.4

Q ss_pred             CCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee-CCeEEEEEEEEcCCCCCCCC-ChHHHHHHHHHHHHHhcCC
Q 013389          114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIE-DSQQIDRIEARLRNVLKGD  191 (444)
Q Consensus       114 ~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~-~~~~~dvf~V~d~~~g~~i~-~~~r~~~i~~~L~~vL~~~  191 (444)
                      .+.++|.|+++||||||++||++|+.+|+||.+|+|+|+ +|++.|+|+|+++ .|.++. +++++++|++.|.++|.|+
T Consensus       702 ~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~-~g~~~~~~~~r~~~i~~~L~~~L~~~  780 (895)
T PRK00275        702 EGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDD-DGEPIGDNPARIEQIREGLTEALRNP  780 (895)
T ss_pred             CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCC-CCCCccchHHHHHHHHHHHHHHHcCC
Confidence            478999999999999999999999999999999999885 6899999999995 677753 4689999999999999986


Q ss_pred             CcccccchhhcccccchhHHhhhhhccccccccccccCCCCCCCEEEEEecCCCCeEEEEEEccCCccHHHHHHHHHHhC
Q 013389          192 NDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDM  271 (444)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DRpGLL~~i~~~L~~~  271 (444)
                      .+..   ..+   ..+.++++       +.         ...+|.|.+++..+.++|+|+|+++||||||++|+++|+.+
T Consensus       781 ~~~~---~~~---~~~~~~~~-------~~---------~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~  838 (895)
T PRK00275        781 DDYP---TII---QRRVPRQL-------KH---------FAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEF  838 (895)
T ss_pred             Cccc---hhh---hhhhhhhc-------cC---------CCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHC
Confidence            4321   001   01112111       11         23579999999999999999999999999999999999999


Q ss_pred             CeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc
Q 013389          272 EYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR  320 (444)
Q Consensus       272 ~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r  320 (444)
                      |+||++|+|.|.|+++.|+|||++.+|.++.+++++++|++.|.++|..
T Consensus       839 ~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~  887 (895)
T PRK00275        839 DLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDA  887 (895)
T ss_pred             CCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999998877899999999998853

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.93  E-value=5.2e-25  Score=245.30  Aligned_cols=181  Identities=28%  Similarity=0.278  Sum_probs=152.0

Q ss_pred             CCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEe-eCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhcC
Q 013389          112 SFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKG  190 (444)
Q Consensus       112 ~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T-~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~~  190 (444)
                      +..+.++|.|+++||||||++||++|+.+|+||.+|+|+| .+|.+.|+|+|.++ .|.+   ++++.+|++.|.++|.|
T Consensus       686 ~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~-~~~~---~~~~~~i~~~l~~~l~~  761 (869)
T PRK04374        686 PDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQ-DTYA---DGDPQRLAAALRQVLAG  761 (869)
T ss_pred             cCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCC-CCCC---hHHHHHHHHHHHHHHcC
Confidence            4457899999999999999999999999999999999998 57999999999995 5553   36788899999999998


Q ss_pred             CCcccccchhhcccccchhHHhhhhhccccccccccccCCCCCCCEEEEEecCCCCeEEEEEEccCCccHHHHHHHHHHh
Q 013389          191 DNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTD  270 (444)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DRpGLL~~i~~~L~~  270 (444)
                      +....   . .  ...+.+++.       +         ....+|.|.+++..+.++|+|+|.++||||||++|+++|++
T Consensus       762 ~~~~~---~-~--~~~~~~~~~-------~---------~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~  819 (869)
T PRK04374        762 DLQKV---R-P--ARRAVPRQL-------R---------HFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRM  819 (869)
T ss_pred             CCCcc---c-c--ccccCcccc-------c---------CCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHH
Confidence            64311   0 0  000011111       1         23468999999999999999999999999999999999999


Q ss_pred             CCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhc
Q 013389          271 MEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVG  319 (444)
Q Consensus       271 ~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~  319 (444)
                      +|+||++|+|+|.|+++.|+|||++.+|.++.+++ ++.|++.|.++|.
T Consensus       820 ~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~-~~~l~~~L~~~l~  867 (869)
T PRK04374        820 QHLRVHDARIATFGERAEDQFQITDEHDRPLSESA-RQALRDALCACLD  867 (869)
T ss_pred             CCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHH-HHHHHHHHHHHhc
Confidence            99999999999999999999999999999887664 4999999988773

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.93  E-value=6.9e-25  Score=245.87  Aligned_cols=184  Identities=32%  Similarity=0.377  Sum_probs=156.3

Q ss_pred             CCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEe-eCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhcCC
Q 013389          113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGD  191 (444)
Q Consensus       113 ~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T-~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~~~  191 (444)
                      ..+.|+|+|+++||||||++|+++|+.+|+||.+|+|+| .+|++.|+|||+++ .|.++.+++++++|++.|.++|.++
T Consensus       665 ~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~-~g~~~~~~~~~~~i~~~L~~~L~~~  743 (850)
T TIGR01693       665 PSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDL-FGSPPAAERVFQELLQGLVDVLAGL  743 (850)
T ss_pred             CCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECC-CCCCCCcHHHHHHHHHHHHHHHcCC
Confidence            367899999999999999999999999999999999995 68999999999995 7888878889999999999999885


Q ss_pred             CcccccchhhcccccchhHHhhhhhccccccccccccCCCCCCCEEEEEecCCCCeEEEEEEccCCccHHHHHHHHHHhC
Q 013389          192 NDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDM  271 (444)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DRpGLL~~i~~~L~~~  271 (444)
                      ....   ... ...+..+++.       +         ....+|.|.|+|..++.+|+|+|.|+||||||++|+++|+++
T Consensus       744 ~~~~---~~~-~~~~~~~~~~-------~---------~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~  803 (850)
T TIGR01693       744 AKDP---DTI-SARRARRRRL-------Q---------HFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEEL  803 (850)
T ss_pred             Cccc---ccc-ccccCCcccc-------c---------CCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHC
Confidence            3211   000 0000011111       1         123679999999999999999999999999999999999999


Q ss_pred             CeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHh
Q 013389          272 EYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAV  318 (444)
Q Consensus       272 ~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al  318 (444)
                      |++|.+|+|.|.|+++.|+|||++..|.|+.+ ++++.|+++|.++|
T Consensus       804 ~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~-~~~~~l~~~L~~~l  849 (850)
T TIGR01693       804 GLSIQSAKITTFGEKAEDVFYVTDLFGLKLTD-EEEQRLLEVLAASV  849 (850)
T ss_pred             CCeEEEEEEEecCccceeEEEEECCCCCCCCH-HHHHHHHHHHHHHh
Confidence            99999999999999999999999999999987 58899999998765

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.93  E-value=2.1e-24  Score=241.84  Aligned_cols=177  Identities=22%  Similarity=0.367  Sum_probs=147.5

Q ss_pred             HHHHHHhcC---CCeEEEeecCC---CCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEE-ecCCeEEEEEEEEeCC
Q 013389           13 YEKLVIRMN---TPRVVIDNAVC---PTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS-SDGRFFMDVFHVTDLN   85 (444)
Q Consensus        13 ~~~~~~~~~---~p~v~i~~~~~---~~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~-t~~g~~~dvF~V~d~~   85 (444)
                      |.+++....   .|.|.+.+...   .++++|+|+++||||||+++|++|+.+|+||++|+|+ |.+|+++|+|+|++++
T Consensus       676 h~~~~~~~~~~~~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~  755 (895)
T PRK00275        676 HTEAILQHPDDGGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDD  755 (895)
T ss_pred             HHHHHHhcccCCCCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCC
Confidence            445554422   46667877665   5899999999999999999999999999999999995 5899999999999999


Q ss_pred             CCCCC-chHHHH----HHHHHhhhccCC-----------------CC------CCCCCceEEEEEEcCCcchHHHHHHHH
Q 013389           86 GNKLT-DESVIS----YIEQSLETIHYG-----------------RS------NSFNGLTALELTGTDRVGLLSEVFAVL  137 (444)
Q Consensus        86 g~~~~-~~~~~~----~i~~aL~~~~~~-----------------~~------~~~~~~t~i~v~~~DrpGLl~~i~~vL  137 (444)
                      |.++. +++.++    .|+++|.+....                 +|      +++.++|+|+|+++||||||++|+++|
T Consensus       756 g~~~~~~~~r~~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L  835 (895)
T PRK00275        756 GEPIGDNPARIEQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIF  835 (895)
T ss_pred             CCCccchHHHHHHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHH
Confidence            98854 333434    455555443210                 12      455679999999999999999999999


Q ss_pred             HHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhcC
Q 013389          138 ADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKG  190 (444)
Q Consensus       138 ~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~~  190 (444)
                      +.+|+||++|+|+|.+++++|+|||+++ .|.++.++++++.|+++|.++|.+
T Consensus       836 ~~~~l~I~~AkI~T~g~~v~D~F~V~d~-~g~~l~~~~~~~~l~~~L~~~L~~  887 (895)
T PRK00275        836 LEFDLSLQNAKIATLGERVEDVFFITDA-DNQPLSDPQLCSRLQDAICEQLDA  887 (895)
T ss_pred             HHCCCEEEEeEEEecCCEEEEEEEEECC-CCCCCCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999995 788888888999999999999976

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.93  E-value=1.2e-24  Score=243.92  Aligned_cols=163  Identities=25%  Similarity=0.310  Sum_probs=147.7

Q ss_pred             CCCEEEEEecCCCCeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEE-ecCCEEEEEEEEEeCCCCCCCCHHHHHHHH
Q 013389          233 DYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATIN-TAGERAYLEFYIRHIDGTPISSEPERQRVI  311 (444)
Q Consensus       233 ~~~~V~v~~~~~~~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~-T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~  311 (444)
                      ..|.|.+.+....++|+|+|+++||||||++|+++|+.+|+||++|+|+ |.++++.|+|||.+.+|.++.+++++++|+
T Consensus       654 ~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~  733 (850)
T TIGR01693       654 GGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELL  733 (850)
T ss_pred             CCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHH
Confidence            3578888887779999999999999999999999999999999999999 568999999999999999988877799999


Q ss_pred             HHHHHHhccC------------CC--------------------CceEEEEEecCCCchHHHHHHHHHHCCceEEEEEee
Q 013389          312 QCLEAAVGRR------------AS--------------------EGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVS  359 (444)
Q Consensus       312 ~~L~~al~rr------------~~--------------------~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~  359 (444)
                      +.|.++|.++            .+                    ..+.++|.|.||||||++|+++|.++|++|+.|+|+
T Consensus       734 ~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~  813 (850)
T TIGR01693       734 QGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKIT  813 (850)
T ss_pred             HHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEE
Confidence            9998887421            00                    147999999999999999999999999999999999


Q ss_pred             cCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhhcc
Q 013389          360 TERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSN  395 (444)
Q Consensus       360 T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~  395 (444)
                      |.|++++|+|||++..|.|++++.++.|+++|.+++
T Consensus       814 t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l  849 (850)
T TIGR01693       814 TFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASV  849 (850)
T ss_pred             ecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999998888899999998865

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.93  E-value=2.8e-24  Score=239.74  Aligned_cols=182  Identities=21%  Similarity=0.243  Sum_probs=150.2

Q ss_pred             CCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEe-eCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhc
Q 013389          111 NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK  189 (444)
Q Consensus       111 ~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T-~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~  189 (444)
                      .+..+.++|.|+++||||||++||++|+.+|+||.+|+|+| .+|.+.|+|+|.++ .|. ..+++++++|++.|.++|.
T Consensus       673 ~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~-~~~-~~~~~~~~~i~~~l~~~l~  750 (856)
T PRK03059        673 SPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDP-EED-VHYRDIINLVEHELAERLA  750 (856)
T ss_pred             cCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCC-CCC-CChHHHHHHHHHHHHHHHc
Confidence            34557899999999999999999999999999999999987 57999999999995 555 4467899999999999999


Q ss_pred             CCCcccccchhhcccccchhHHhhhhhccccccccccccCCCCCCCEEEEEecCCCCeEEEEEEccCCccHHHHHHHHHH
Q 013389          190 GDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLT  269 (444)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DRpGLL~~i~~~L~  269 (444)
                      |+.+..   .       ...+|. ..  .-+         ....+|.|.+++..+.++|+|+|+++||||||++|+++|+
T Consensus       751 ~~~~~~---~-------~~~~~~-~~--~~~---------~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~  808 (856)
T PRK03059        751 EQAPLP---E-------PSKGRL-SR--QVK---------HFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLA  808 (856)
T ss_pred             CCCCcc---h-------hhcccc-cc--ccc---------CCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHH
Confidence            864321   0       111110 00  001         1236789999999999999999999999999999999999


Q ss_pred             hCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhc
Q 013389          270 DMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVG  319 (444)
Q Consensus       270 ~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~  319 (444)
                      .+|+||++|+|+|.|+++.|+|||.+.   ++.+++++++|++.|.++|.
T Consensus       809 ~~~l~I~~AkI~T~~~~v~DvF~V~~~---~~~~~~~~~~l~~~L~~~L~  855 (856)
T PRK03059        809 EHRVSVHTAKINTLGERVEDTFLIDGS---GLSDNRLQIQLETELLDALA  855 (856)
T ss_pred             HCCCeEEEEEEeecCCEEEEEEEEcCC---CCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999543   34566789999999988763

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.93  E-value=5.1e-24  Score=240.46  Aligned_cols=188  Identities=26%  Similarity=0.439  Sum_probs=159.3

Q ss_pred             CCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEe-eCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhcC
Q 013389          112 SFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKG  190 (444)
Q Consensus       112 ~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T-~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~~  190 (444)
                      +..+.++|+|+++||||||++|+++|+.+|+||.+|+|+| .+|++.|+|+|+++ .|.++.++++++.|++.|.+++.|
T Consensus       728 ~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~-~g~~~~~~~~~~~l~~~L~~~l~~  806 (931)
T PRK05092        728 PARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDA-FGRDEDEPRRLARLAKAIEDALSG  806 (931)
T ss_pred             CCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECC-CCCCCCCHHHHHHHHHHHHHHHcC
Confidence            3457899999999999999999999999999999999999 57899999999995 787777889999999999999988


Q ss_pred             CCcccccchhhcccccchhHHhhhhhccccccccccccCCCCCCCEEEEEecCCCCeEEEEEEccCCccHHHHHHHHHHh
Q 013389          191 DNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTD  270 (444)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DRpGLL~~i~~~L~~  270 (444)
                      +.+..   .       ...+|..... ..+         ....+|.|.|+|..+.++|+|.|.++||||||++|+++|++
T Consensus       807 ~~~~~---~-------~~~~r~~~~~-~~~---------~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~  866 (931)
T PRK05092        807 EVRLP---E-------ALAKRTKPKK-RAR---------AFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSD  866 (931)
T ss_pred             CCCCc---c-------ccccccCccc-ccc---------CCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHH
Confidence            54321   0       1111100000 001         12367999999999999999999999999999999999999


Q ss_pred             CCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc
Q 013389          271 MEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR  320 (444)
Q Consensus       271 ~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r  320 (444)
                      +|+||.+|+|.|.|+++.|+|||++.+|.++.+++.++.|+++|.++|..
T Consensus       867 ~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~  916 (931)
T PRK05092        867 LNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAE  916 (931)
T ss_pred             CCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999998887889999999998854

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=4.8e-24  Score=235.92  Aligned_cols=177  Identities=27%  Similarity=0.304  Sum_probs=144.8

Q ss_pred             CCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhcCCCc
Q 013389          114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDND  193 (444)
Q Consensus       114 ~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~~~~~  193 (444)
                      .+.++|+|+++||||||++||++|+.+|+||++|+|+|.+|.+.|+|+|.++ .|.+.    .++++++.|.++|.|+.+
T Consensus       597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~-~~~~~----~~~~l~~~L~~~L~~~~~  671 (774)
T PRK03381        597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPR-FGSPP----DAALLRQDLRRALDGDLD  671 (774)
T ss_pred             CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC-CCCcc----hHHHHHHHHHHHHcCCCc
Confidence            6889999999999999999999999999999999999999999999999995 56543    258899999999998532


Q ss_pred             ccccchhhcccccchhHHhhhhhccccccccccccCCCCCCCEEEEEecCCCCeEEEEEEccCCccHHHHHHHHHHhCCe
Q 013389          194 IRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEY  273 (444)
Q Consensus       194 ~~~~~~~~~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DRpGLL~~i~~~L~~~~~  273 (444)
                      ..   ..+      ..++..+.....+         ....++.|.+++..+.++|+|+|.++||||||++|+++|+++|+
T Consensus       672 ~~---~~~------~~~~~~~~~~~~~---------~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~l  733 (774)
T PRK03381        672 VL---ARL------AAREAAAAAVPVR---------RPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGV  733 (774)
T ss_pred             hh---hhh------hcccccccccccc---------cCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCC
Confidence            11   000      0010000000001         22367899999999999999999999999999999999999999


Q ss_pred             eEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 013389          274 VVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLE  315 (444)
Q Consensus       274 nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~  315 (444)
                      ||++|+|+|.|+++.|+|||++.+|.++.++  ++.|++.|.
T Consensus       734 nI~~AkI~T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L~  773 (774)
T PRK03381        734 DVRWARVATLGADVVDVFYVTGAAGGPLADA--RAAVEQAVL  773 (774)
T ss_pred             eEEEEEEeecCCeEEEEEEEECCCCCcCchH--HHHHHHHhh
Confidence            9999999999999999999999999998764  677777663

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=1.8e-23  Score=222.80  Aligned_cols=166  Identities=25%  Similarity=0.307  Sum_probs=146.7

Q ss_pred             CCCCEEEEEecCCCCeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec-CCEEEEEEEEEeCCCCCCCCHHHHHHH
Q 013389          232 TDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA-GERAYLEFYIRHIDGTPISSEPERQRV  310 (444)
Q Consensus       232 ~~~~~V~v~~~~~~~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~-g~~a~d~F~V~~~~g~~l~~~~~~~~l  310 (444)
                      ...|.|.+......+.|.|+|+++|+|.||+.++.++...|.||++|+|+|. +|++.|+|+|.+++|.++. +.+...+
T Consensus       669 ~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~-~dr~~~~  747 (867)
T COG2844         669 LGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVE-EDRRAAL  747 (867)
T ss_pred             ccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccc-hhHHHHH
Confidence            3568888888888899999999999999999999999999999999999885 6899999999999999988 5577788


Q ss_pred             HHHHHHHhcc---------CC----------C----------CceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecC
Q 013389          311 IQCLEAAVGR---------RA----------S----------EGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTE  361 (444)
Q Consensus       311 ~~~L~~al~r---------r~----------~----------~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~  361 (444)
                      +..|.+++..         |.          |          +.+.|||.+.||||||++|+++|.+++++|+.|+|+|.
T Consensus       748 ~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~  827 (867)
T COG2844         748 RGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTF  827 (867)
T ss_pred             HHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccc
Confidence            8888776631         10          1          14799999999999999999999999999999999999


Q ss_pred             CceEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccc
Q 013389          362 RDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKV  398 (444)
Q Consensus       362 g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~  398 (444)
                      ||+|+|+|||++..|.+++++....+.+.+.++++..
T Consensus       828 GErveD~F~vt~~~~~~l~~~~~q~l~~~ll~al~~~  864 (867)
T COG2844         828 GERVEDVFIVTDADGQALNAELRQSLLQRLLEALLPN  864 (867)
T ss_pred             cccceeEEEEeccccccCCHHHHHHHHHHHHHHhccc
Confidence            9999999999999999998888888888888876543

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.91  E-value=4.9e-23  Score=229.53  Aligned_cols=160  Identities=25%  Similarity=0.308  Sum_probs=138.9

Q ss_pred             CCEEEE-EecCCCCeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEe-cCCEEEEEEEEEeCCCCCCCCHHHHHHHH
Q 013389          234 YPVVTV-QNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINT-AGERAYLEFYIRHIDGTPISSEPERQRVI  311 (444)
Q Consensus       234 ~~~V~v-~~~~~~~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T-~g~~a~d~F~V~~~~g~~l~~~~~~~~l~  311 (444)
                      .|.|.+ ...++.+.+.|+|+++||||||++|+++|+.+|+||++|+|+| .+|.+.|+|+|.+++|.+   ++.+++|+
T Consensus       676 ~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~---~~~~~~i~  752 (869)
T PRK04374        676 QTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYA---DGDPQRLA  752 (869)
T ss_pred             CCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCC---hHHHHHHH
Confidence            355554 4377889999999999999999999999999999999999998 578999999999998874   24688899


Q ss_pred             HHHHHHhccC----------CC--------------------CceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecC
Q 013389          312 QCLEAAVGRR----------AS--------------------EGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTE  361 (444)
Q Consensus       312 ~~L~~al~rr----------~~--------------------~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~  361 (444)
                      +.|.++|..+          .+                    ..+.|+|.|.||||||++|+++|.++|++|+.|+|+|.
T Consensus       753 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~  832 (869)
T PRK04374        753 AALRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATF  832 (869)
T ss_pred             HHHHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEec
Confidence            9998877321          01                    13789999999999999999999999999999999999


Q ss_pred             CceEEEEEEEEcCCCCCCChHHHHHHHHHHhhccc
Q 013389          362 RDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNL  396 (444)
Q Consensus       362 g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~  396 (444)
                      |++++|+|||+|.+|.++++...++|+++|.+++-
T Consensus       833 g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l~  867 (869)
T PRK04374        833 GERAEDQFQITDEHDRPLSESARQALRDALCACLD  867 (869)
T ss_pred             CCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHhc
Confidence            99999999999999999877555999999998763

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.91  E-value=1.4e-22  Score=226.31  Aligned_cols=163  Identities=20%  Similarity=0.223  Sum_probs=137.2

Q ss_pred             CCeEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEE-ecCCeEEEEEEEEeCCCCCCCchH----HHH
Q 013389           22 TPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS-SDGRFFMDVFHVTDLNGNKLTDES----VIS   96 (444)
Q Consensus        22 ~p~v~i~~~~~~~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~-t~~g~~~dvF~V~d~~g~~~~~~~----~~~   96 (444)
                      .|.|.+.+....+.++|+|+++||||||++++++|+.+|+||++|+|+ +.+|+++|+|+|.+++|. ..+++    +.+
T Consensus       665 ~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~~~~~~i~~  743 (856)
T PRK03059        665 TPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYRDIINLVEH  743 (856)
T ss_pred             CCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChHHHHHHHHH
Confidence            567778888888999999999999999999999999999999999996 599999999999998776 33333    334


Q ss_pred             HHHHHhhhccCC-----------------CC------CCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC
Q 013389           97 YIEQSLETIHYG-----------------RS------NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN  153 (444)
Q Consensus        97 ~i~~aL~~~~~~-----------------~~------~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~  153 (444)
                      .|+++|.+....                 +|      .++.+.|.|+|+++||||||++||++|+.+|+||++|+|+|.+
T Consensus       744 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~  823 (856)
T PRK03059        744 ELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLG  823 (856)
T ss_pred             HHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecC
Confidence            456666553210                 11      4556899999999999999999999999999999999999999


Q ss_pred             CeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhc
Q 013389          154 GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK  189 (444)
Q Consensus       154 ~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~  189 (444)
                      ++++|+|||+++    ++.+++++++|++.|.++|.
T Consensus       824 ~~v~DvF~V~~~----~~~~~~~~~~l~~~L~~~L~  855 (856)
T PRK03059        824 ERVEDTFLIDGS----GLSDNRLQIQLETELLDALA  855 (856)
T ss_pred             CEEEEEEEEcCC----CCCCHHHHHHHHHHHHHHhc
Confidence            999999999653    24478899999999998874

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.90  E-value=1.8e-22  Score=227.97  Aligned_cols=178  Identities=20%  Similarity=0.232  Sum_probs=150.5

Q ss_pred             HHHHHHhc----CCCeEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCC
Q 013389           13 YEKLVIRM----NTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGN   87 (444)
Q Consensus        13 ~~~~~~~~----~~p~v~i~~~~~~~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t-~~g~~~dvF~V~d~~g~   87 (444)
                      |.+++...    .+|.|.+++....+.++|+|+++||||||++|+++|+.+||||.+|+|+| .+|+++|+|+|++++|.
T Consensus       706 h~~~~~~~~~~~~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~  785 (931)
T PRK05092        706 HARFIRDADDAGRPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGR  785 (931)
T ss_pred             HHHHHHhccccCCCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCC
Confidence            44455443    24688899988889999999999999999999999999999999999976 89999999999999998


Q ss_pred             CCCchHHHHHHHHH----hhhccCC-------------------CC------CCCCCceEEEEEEcCCcchHHHHHHHHH
Q 013389           88 KLTDESVISYIEQS----LETIHYG-------------------RS------NSFNGLTALELTGTDRVGLLSEVFAVLA  138 (444)
Q Consensus        88 ~~~~~~~~~~i~~a----L~~~~~~-------------------~~------~~~~~~t~i~v~~~DrpGLl~~i~~vL~  138 (444)
                      +..+++.++.|+++    |.+....                   +|      +.+..+|.|+|+++||||||++|+++|+
T Consensus       786 ~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~  865 (931)
T PRK05092        786 DEDEPRRLARLAKAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALS  865 (931)
T ss_pred             CCCCHHHHHHHHHHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHH
Confidence            77666555555444    4322110                   01      3456789999999999999999999999


Q ss_pred             HCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhcCC
Q 013389          139 DLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGD  191 (444)
Q Consensus       139 ~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~~~  191 (444)
                      ++|+||.+|+|.|.++++.|+|||++. .|.++.++++++.|++.|.++|.++
T Consensus       866 ~~gl~I~~A~I~T~~~~~~D~F~v~d~-~g~~i~~~~~~~~l~~~L~~~L~~~  917 (931)
T PRK05092        866 DLNLNIASAHIATYGERAVDVFYVTDL-FGLKITNEARQAAIRRALLAALAEG  917 (931)
T ss_pred             HCCceEEEEEEEEcCCEEEEEEEEeCC-CCCcCCCHHHHHHHHHHHHHHhcCc
Confidence            999999999999999999999999995 7888988889999999999999874

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=4.2e-23  Score=219.89  Aligned_cols=182  Identities=26%  Similarity=0.340  Sum_probs=151.7

Q ss_pred             CCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee-CCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhc
Q 013389          111 NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK  189 (444)
Q Consensus       111 ~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~-~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~  189 (444)
                      .+..+.|+|.|+++|+|.||+.+++++...|.||++|+|+|. +|++.|+|+|+++ .|.++. ++|...++..|.+++.
T Consensus       679 r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~-~g~~~~-~dr~~~~~~~l~~~l~  756 (867)
T COG2844         679 RPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEP-DGFPVE-EDRRAALRGELIEALL  756 (867)
T ss_pred             cccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecC-CCCccc-hhHHHHHHHHHHHHHh
Confidence            344578999999999999999999999999999999999984 7899999999996 788885 7788888888887775


Q ss_pred             CCCcccccchhhcccccchhHHhhhhhccccccccccccCCCCCCCEEEEEecCCCCeEEEEEEccCCccHHHHHHHHHH
Q 013389          190 GDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLT  269 (444)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DRpGLL~~i~~~L~  269 (444)
                      .....       ++.++..+|+++.       |         ..+|.|.|.+.....+|+++|.+.||||||++++++|+
T Consensus       757 s~~~~-------~~~~~r~~r~~~~-------f---------~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~  813 (867)
T COG2844         757 SGKAQ-------PPRRRRIPRKLRH-------F---------PIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFA  813 (867)
T ss_pred             cCCCC-------CccccccCcccce-------e---------ccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHH
Confidence            42211       0112223333322       3         36899999999999999999999999999999999999


Q ss_pred             hCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHh
Q 013389          270 DMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAV  318 (444)
Q Consensus       270 ~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al  318 (444)
                      +++++|++|+|+|.|+++.|+|||++..|.+++.+ ..+.+.+.|.+++
T Consensus       814 dl~l~i~~AkItT~GErveD~F~vt~~~~~~l~~~-~~q~l~~~ll~al  861 (867)
T COG2844         814 DLGLSLHSAKITTFGERVEDVFIVTDADGQALNAE-LRQSLLQRLLEAL  861 (867)
T ss_pred             hcccceeeeeeccccccceeEEEEeccccccCCHH-HHHHHHHHHHHHh
Confidence            99999999999999999999999999999999654 6677777776655

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.90  E-value=7.5e-23  Score=226.41  Aligned_cols=154  Identities=29%  Similarity=0.333  Sum_probs=134.5

Q ss_pred             CCCEEEEEecCCCCeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHH
Q 013389          233 DYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQ  312 (444)
Q Consensus       233 ~~~~V~v~~~~~~~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~  312 (444)
                      .++.|.+.+.. .+.+.|+|+|+||||||++|+++|+.+|+||++|+|.|.+|++.|+|+|.+++|.+..    ++++++
T Consensus       586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~----~~~l~~  660 (774)
T PRK03381        586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPD----AALLRQ  660 (774)
T ss_pred             CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcch----HHHHHH
Confidence            45788888888 8999999999999999999999999999999999999988999999999998887543    466777


Q ss_pred             HHHHHhcc----------C-CC-----------------------CceEEEEEecCCCchHHHHHHHHHHCCceEEEEEe
Q 013389          313 CLEAAVGR----------R-AS-----------------------EGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEV  358 (444)
Q Consensus       313 ~L~~al~r----------r-~~-----------------------~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i  358 (444)
                      .|++++..          + ..                       ..++|+|.+.||||||++||++|.++|+||..|+|
T Consensus       661 ~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI  740 (774)
T PRK03381        661 DLRRALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARV  740 (774)
T ss_pred             HHHHHHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEE
Confidence            76655421          1 00                       03789999999999999999999999999999999


Q ss_pred             ecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHh
Q 013389          359 STERDEALNIFYVTDEMGNPADPKIIEAVRQKIG  392 (444)
Q Consensus       359 ~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~  392 (444)
                      .|.|+++.|+|||+|..|.+++++ ++.|+++|.
T Consensus       741 ~T~g~~a~D~F~V~d~~g~~~~~~-~~~l~~~L~  773 (774)
T PRK03381        741 ATLGADVVDVFYVTGAAGGPLADA-RAAVEQAVL  773 (774)
T ss_pred             eecCCeEEEEEEEECCCCCcCchH-HHHHHHHhh
Confidence            999999999999999999999866 788888764

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.84  E-value=1.3e-20  Score=148.07  Aligned_cols=75  Identities=73%  Similarity=1.183  Sum_probs=72.5

Q ss_pred             eEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccC
Q 013389          247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRR  321 (444)
Q Consensus       247 ~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr  321 (444)
                      ||+|+|.|+|||||||+|+++|+++|++|++|+|.|.|+++.|+|||++.+|.|+.+++++++|+++|.++|+||
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~~   75 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIERR   75 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhcC
Confidence            689999999999999999999999999999999999999999999999999999999989999999999999875

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.79  E-value=4.5e-19  Score=138.42  Aligned_cols=68  Identities=21%  Similarity=0.414  Sum_probs=64.6

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCC-hHHHHHHHHHHhh
Q 013389          326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPAD-PKIIEAVRQKIGL  393 (444)
Q Consensus       326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~-~~~~~~lr~~l~~  393 (444)
                      ++|||.+.||||||++|+++|.++|++|+.|+|+|.|++++|+|||+|.+|+|+. ++.++.|+++|..
T Consensus         2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~~   70 (72)
T cd04895           2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLGT   70 (72)
T ss_pred             EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhcc
Confidence            6899999999999999999999999999999999999999999999999999996 4788999999864

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.78  E-value=9.3e-19  Score=137.60  Aligned_cols=70  Identities=21%  Similarity=0.251  Sum_probs=66.0

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCCh-HHHHHHHHHHhhcc
Q 013389          326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADP-KIIEAVRQKIGLSN  395 (444)
Q Consensus       326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~-~~~~~lr~~l~~~~  395 (444)
                      ++|||.|+||||||++|+++|.++|++|..|+|+|+|++|+|+|||+|..|.|+.+ +.++.|+++|.+++
T Consensus         2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al   72 (75)
T cd04897           2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAI   72 (75)
T ss_pred             EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999965 67899999998865

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.74  E-value=1.3e-17  Score=131.10  Aligned_cols=70  Identities=20%  Similarity=0.302  Sum_probs=65.2

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHCCceEEEEEee--cCCceEEEEEEEEcCCCCCCCh-HHHHHHHHHHhhccc
Q 013389          326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVS--TERDEALNIFYVTDEMGNPADP-KIIEAVRQKIGLSNL  396 (444)
Q Consensus       326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~--T~g~~a~d~FyV~d~~g~~v~~-~~~~~lr~~l~~~~~  396 (444)
                      +++||.|.|||||||+|+++|.++|++|+.|+|+  |.|++++|+||| +..|.++.+ +.++.|+++|.+++.
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~   73 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMV   73 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhc
Confidence            5799999999999999999999999999999999  999999999999 888999854 788999999998764

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.71  E-value=6.4e-17  Score=126.29  Aligned_cols=70  Identities=19%  Similarity=0.291  Sum_probs=66.0

Q ss_pred             eEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 013389          247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEA  316 (444)
Q Consensus       247 ~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~  316 (444)
                      +|+|+|.++||||||++|+++|+++|++|+.|+|.|.|+++.|+|||++.+|.|+.++++++.|++.|..
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~~   70 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLGT   70 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhcc
Confidence            5899999999999999999999999999999999999999999999999999999988788899888753

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.67  E-value=6e-16  Score=143.51  Aligned_cols=143  Identities=13%  Similarity=0.139  Sum_probs=113.7

Q ss_pred             CCCeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHh-----
Q 013389          244 DRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAV-----  318 (444)
Q Consensus       244 ~~~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al-----  318 (444)
                      ...+.+|++.|+||||++++|+++|+++||||.+++....|+++.-++.|..+      + ...++|+..|...-     
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~------~-~~~~~le~~L~~l~~~~~L   77 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGS------W-NAITLIESTLPLKGAELDL   77 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCC------h-hHHHHHHHHHHhhhhhcCe
Confidence            45789999999999999999999999999999999999999988888888533      2 25677777775421     


Q ss_pred             c---cCC-----C---CceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCc--eEEEEEEEEcCCCCCCChHHHH
Q 013389          319 G---RRA-----S---EGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERD--EALNIFYVTDEMGNPADPKIIE  385 (444)
Q Consensus       319 ~---rr~-----~---~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~--~a~d~FyV~d~~g~~v~~~~~~  385 (444)
                      .   ++.     +   ..+.++|.+.|||||+++||++|+++|+||..++..|++.  ...+.|.+.-....|.+ ..++
T Consensus        78 ~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~-~~~~  156 (190)
T PRK11589         78 LIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPAS-QDAA  156 (190)
T ss_pred             EEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCC-CCHH
Confidence            0   121     1   1389999999999999999999999999999999999996  68888888765555643 3356


Q ss_pred             HHHHHHhhc
Q 013389          386 AVRQKIGLS  394 (444)
Q Consensus       386 ~lr~~l~~~  394 (444)
                      .|+++|.+.
T Consensus       157 ~L~~~l~~l  165 (190)
T PRK11589        157 NIEQAFKAL  165 (190)
T ss_pred             HHHHHHHHH
Confidence            666665553

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.67  E-value=4.8e-16  Score=122.26  Aligned_cols=72  Identities=19%  Similarity=0.334  Sum_probs=67.7

Q ss_pred             EEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEE--ecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc
Q 013389          248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATIN--TAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR  320 (444)
Q Consensus       248 tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~--T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r  320 (444)
                      |+|+|.|+|||||||+|+++|.++|++|+.|+|.  |.|+++.|+||| +.+|.++.++++++.|+++|.++++.
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~~   74 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMVC   74 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhcC
Confidence            6899999999999999999999999999999999  999999999999 78898998888899999999988753

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.65  E-value=1.4e-15  Score=120.08  Aligned_cols=74  Identities=68%  Similarity=1.114  Sum_probs=68.3

Q ss_pred             eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhcC
Q 013389          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKG  190 (444)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~~  190 (444)
                      |.|+|+++||||||++|+++|+.+||||++|+++|.++++.|+|||+|+..|.++.+++++++|++.|.++|.|
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~g   74 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLRG   74 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhcC
Confidence            57999999999999999999999999999999999999999999999952277787889999999999999875

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.62  E-value=3.4e-15  Score=117.53  Aligned_cols=72  Identities=26%  Similarity=0.464  Sum_probs=66.0

Q ss_pred             ceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee-CCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHh
Q 013389          116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL  188 (444)
Q Consensus       116 ~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~-~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL  188 (444)
                      .++|+|+++||||||++++++|+.+|+||.+|+|+|+ ++++.|+|||+++ .|.++.++++++++++.|.++|
T Consensus         1 ~~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~-~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           1 GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDP-DGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             CEEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECC-CCCCCChHHHHHHHHHHHHhhC
Confidence            3689999999999999999999999999999999998 6999999999995 7777777899999999998865

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.59  E-value=2.2e-14  Score=133.07  Aligned_cols=144  Identities=14%  Similarity=0.148  Sum_probs=109.8

Q ss_pred             CCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccC---C
Q 013389           32 CPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHY---G  108 (444)
Q Consensus        32 ~~~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~---~  108 (444)
                      +.+..+|++.|+|||||++.++++|+++||||.+++++..+|.|.-++.|..       +|..+..|+.+|.....   .
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~-------~~~~~~~le~~L~~l~~~~~L   77 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSG-------SWNAITLIESTLPLKGAELDL   77 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeC-------ChhHHHHHHHHHHhhhhhcCe
Confidence            5678999999999999999999999999999999999999998876777743       25566778877765431   1


Q ss_pred             -----CC----CC-CCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCC------eEEEEEEEEcCCCCCCCC
Q 013389          109 -----RS----NS-FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNG------RIASLIYVKDCNSGSPIE  172 (444)
Q Consensus       109 -----~~----~~-~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~------~~~dvf~V~d~~~g~~i~  172 (444)
                           ++    .. ....+.++|+|.||||+.+++|++|+++|+||.+.+..|.+.      .+...+.|.-| .+..  
T Consensus        78 ~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP-~~~~--  154 (190)
T PRK11589         78 LIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSP-ASQD--  154 (190)
T ss_pred             EEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcC-CCCC--
Confidence                 21    11 122489999999999999999999999999999999988652      44555666654 2322  


Q ss_pred             ChHHHHHHHHHHHHHhc
Q 013389          173 DSQQIDRIEARLRNVLK  189 (444)
Q Consensus       173 ~~~r~~~i~~~L~~vL~  189 (444)
                          .+.++.+|.+...
T Consensus       155 ----~~~L~~~l~~l~~  167 (190)
T PRK11589        155 ----AANIEQAFKALCT  167 (190)
T ss_pred             ----HHHHHHHHHHHHH
Confidence                3567777776444

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.58  E-value=1.3e-14  Score=114.52  Aligned_cols=72  Identities=24%  Similarity=0.346  Sum_probs=67.4

Q ss_pred             EEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCC-CCCCCCHHHHHHHHHHHHHHhc
Q 013389          248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHID-GTPISSEPERQRVIQCLEAAVG  319 (444)
Q Consensus       248 tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~-g~~l~~~~~~~~l~~~L~~al~  319 (444)
                      |+|+|.++||||||++|+++|+++|+||++|+|+|.++++.|+|+|.+++ |.++.+++++++|++.|.++|.
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~   73 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR   73 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence            68999999999999999999999999999999999999999999999988 8888787789999999988764

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.57  E-value=2e-14  Score=113.18  Aligned_cols=72  Identities=25%  Similarity=0.312  Sum_probs=65.9

Q ss_pred             eEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec-CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHh
Q 013389          247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA-GERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAV  318 (444)
Q Consensus       247 ~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~-g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al  318 (444)
                      ++.|+|.++||||||++++++|+.+|+||++|+|.|. ++++.|+|+|++.+|.++.++++++++++.|.++|
T Consensus         1 ~~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           1 GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             CEEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence            3689999999999999999999999999999999998 68999999999999998877778999999987754

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.55  E-value=5.6e-14  Score=111.54  Aligned_cols=71  Identities=31%  Similarity=0.466  Sum_probs=64.4

Q ss_pred             EEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEe-eCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhcC
Q 013389          118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKG  190 (444)
Q Consensus       118 ~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T-~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~~  190 (444)
                      .++|+++||||||++++++|+.+|+||.+|+|.| .++++.|+|||+|+ .|. ..++++++++++.|.++|..
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~-~~~-~~~~~~~~~l~~~L~~~L~~   73 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA-REL-LHTKKRREETYDYLRAVLGD   73 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC-CCC-CCCHHHHHHHHHHHHHHHch
Confidence            6899999999999999999999999999999997 78999999999995 555 44678999999999998864

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.53  E-value=7.5e-14  Score=110.81  Aligned_cols=70  Identities=24%  Similarity=0.439  Sum_probs=63.5

Q ss_pred             EEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEe-cCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhc
Q 013389          249 VVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINT-AGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVG  319 (444)
Q Consensus       249 vv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T-~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~  319 (444)
                      +++|+|+||||||++++++|+++|+||++|+|+| .++++.|+|||++++|. ..++++++++++.|.++|.
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~L~   72 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL-LHTKKRREETYDYLRAVLG   72 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHHc
Confidence            6899999999999999999999999999999997 78999999999998777 4556689999999988874

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.49  E-value=8.7e-14  Score=123.99  Aligned_cols=144  Identities=17%  Similarity=0.170  Sum_probs=118.3

Q ss_pred             CCCeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH-----h
Q 013389          244 DRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAA-----V  318 (444)
Q Consensus       244 ~~~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~a-----l  318 (444)
                      ..+|.+|++.++||||+...+++...++||||.++|++..|+.+.-+..|..+      |+ ...+|++.|...     |
T Consensus         2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisgs------~d-av~~le~~l~~l~~~~~L   74 (176)
T COG2716           2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISGS------WD-AVTLLEATLPLLGAELDL   74 (176)
T ss_pred             CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEeeC------HH-HHHHHHHHhhcccccCCe
Confidence            35689999999999999999999999999999999999999988877777643      33 577888887532     1


Q ss_pred             ----ccC-------CCCceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCce--EEEEEEEEcCCCCCCChHHHH
Q 013389          319 ----GRR-------ASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDE--ALNIFYVTDEMGNPADPKIIE  385 (444)
Q Consensus       319 ----~rr-------~~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~--a~d~FyV~d~~g~~v~~~~~~  385 (444)
                          .|.       .+..+.++|.+.|||||+.++|++|.++|+||......|+-..  ....|.+.-..+.|++ ..+.
T Consensus        75 ~v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~-~~i~  153 (176)
T COG2716          75 LVVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPAN-LSIS  153 (176)
T ss_pred             EEEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCc-CcHH
Confidence                111       1225899999999999999999999999999999999998654  7788999766788876 5568


Q ss_pred             HHHHHHhhcc
Q 013389          386 AVRQKIGLSN  395 (444)
Q Consensus       386 ~lr~~l~~~~  395 (444)
                      .|+++|.+.+
T Consensus       154 ~l~~~f~al~  163 (176)
T COG2716         154 ALRDAFEALC  163 (176)
T ss_pred             HHHHHHHHHH
Confidence            8888887754

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.39  E-value=3.3e-12  Score=100.26  Aligned_cols=72  Identities=72%  Similarity=1.040  Sum_probs=66.4

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhhccc
Q 013389          325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNL  396 (444)
Q Consensus       325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~  396 (444)
                      ++.++|.++||||+|++|+.+|+++|+||.+|.+.|.++.+.|+|+|+|.+|.+++++..+++++.|+.++|
T Consensus         1 gtri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l~~~~~   72 (72)
T cd04926           1 GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTIEAVRQEIGPACL   72 (72)
T ss_pred             CeEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcCCHHHHHHHHHHhccccC
Confidence            468999999999999999999999999999999999988999999999999888866788999999997654

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.33  E-value=1.3e-11  Score=96.78  Aligned_cols=68  Identities=32%  Similarity=0.531  Sum_probs=61.4

Q ss_pred             ceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHH
Q 013389          116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLR  185 (444)
Q Consensus       116 ~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~  185 (444)
                      .++|+|.++||||+|++|+++|+.+|+||.+|.++|.++++.|+|+|+++ ++.++ +++++++|++.|-
T Consensus         1 gtri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~-~~~~~-~~~~~~~l~~~l~   68 (72)
T cd04926           1 GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDA-NGNPV-DPKTIEAVRQEIG   68 (72)
T ss_pred             CeEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECC-CCCcC-CHHHHHHHHHHhc
Confidence            36899999999999999999999999999999999998899999999995 67777 6788888888775

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.32  E-value=6.4e-12  Score=112.15  Aligned_cols=146  Identities=14%  Similarity=0.178  Sum_probs=111.2

Q ss_pred             CCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCC---
Q 013389           32 CPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG---  108 (444)
Q Consensus        32 ~~~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~---  108 (444)
                      .+++.+|++.++||||+...++++.+++||||.+++++..|+.|.-+..+.   |    +|+..+.+|++|....+.   
T Consensus         2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lis---g----s~dav~~le~~l~~l~~~~~L   74 (176)
T COG2716           2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLIS---G----SWDAVTLLEATLPLLGAELDL   74 (176)
T ss_pred             CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEe---e----CHHHHHHHHHHhhcccccCCe
Confidence            456799999999999999999999999999999999999999887565555   4    588899999999876541   


Q ss_pred             -----CC-----CCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee--CCeEEEEEEEEcCCCCCCCCChHH
Q 013389          109 -----RS-----NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQ  176 (444)
Q Consensus       109 -----~~-----~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~--~~~~~dvf~V~d~~~g~~i~~~~r  176 (444)
                           |+     ......+.+.|.+.||||++.++|++|..+|+||++....|.  .+--.-.|...-. -.-|.  --.
T Consensus        75 ~v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it-~~lPa--~~~  151 (176)
T COG2716          75 LVVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQIT-ARLPA--NLS  151 (176)
T ss_pred             EEEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhh-ccCCC--cCc
Confidence                 32     344567899999999999999999999999999999888874  2222233443331 12222  123


Q ss_pred             HHHHHHHHHHH
Q 013389          177 IDRIEARLRNV  187 (444)
Q Consensus       177 ~~~i~~~L~~v  187 (444)
                      ...|++++...
T Consensus       152 i~~l~~~f~al  162 (176)
T COG2716         152 ISALRDAFEAL  162 (176)
T ss_pred             HHHHHHHHHHH
Confidence            45677776653

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.30  E-value=1.9e-11  Score=94.36  Aligned_cols=65  Identities=17%  Similarity=0.171  Sum_probs=56.4

Q ss_pred             EEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec-CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHh
Q 013389          248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA-GERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAV  318 (444)
Q Consensus       248 tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~-g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al  318 (444)
                      ..|.|+++||||||++++++|+.+|+||++|+|.|. +|++.|+|+|.+.+|.      +.+.|+++|+++|
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~------~~~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG------ETAALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc------chHHHHHHHHHhh
Confidence            478999999999999999999999999999999975 6899999999988774      3456777776665

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.27  E-value=3.6e-11  Score=92.83  Aligned_cols=52  Identities=23%  Similarity=0.312  Sum_probs=49.0

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEE-ecCCeEEEEEEEEeCCCC
Q 013389           36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS-SDGRFFMDVFHVTDLNGN   87 (444)
Q Consensus        36 t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~-t~~g~~~dvF~V~d~~g~   87 (444)
                      .+|.|+++||||||++++++|+.+|+||++|+|+ +.+|+++|+|+|.+++|.
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~   54 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG   54 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc
Confidence            4789999999999999999999999999999997 589999999999999884

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.25  E-value=7e-11  Score=91.51  Aligned_cols=70  Identities=40%  Similarity=0.605  Sum_probs=63.6

Q ss_pred             eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHh
Q 013389          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL  188 (444)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL  188 (444)
                      |.|.|.++|+||+|++|+++|+++++||.++++.|.++++.|+|++.++ .|.++ +.+++++|++.|.+++
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~-~~~~~-~~~~~~~i~~~l~~~~   70 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDA-DGQPL-DPERQEALRAALGEAL   70 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECC-CCCcC-CHHHHHHHHHHHHhhC
Confidence            5789999999999999999999999999999999988899999999995 67774 6789999999998764

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.22  E-value=1.2e-10  Score=90.24  Aligned_cols=70  Identities=31%  Similarity=0.489  Sum_probs=63.7

Q ss_pred             EEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHh
Q 013389          248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAV  318 (444)
Q Consensus       248 tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al  318 (444)
                      |.|.|.++||||+|++++++|.+++++|.++++.+.++.+.+.|++.+.+|.+. +++++++|+++|..+|
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~-~~~~~~~i~~~l~~~~   70 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPL-DPERQEALRAALGEAL   70 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcC-CHHHHHHHHHHHHhhC
Confidence            578999999999999999999999999999999998889999999999999884 4568999999997653

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.21  E-value=1.2e-10  Score=126.99  Aligned_cols=116  Identities=18%  Similarity=0.207  Sum_probs=99.4

Q ss_pred             EEEEEEc-cCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccC-----
Q 013389          248 SVVNVQC-KDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRR-----  321 (444)
Q Consensus       248 tvv~V~~-~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr-----  321 (444)
                      -.++|.. +|+||+|.+++++|+.++++|.+|++.+ +|.+..+|.|+...|.+.+.    ..+++.+..++.+.     
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  621 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDP----QEFLQAYKSGVYSELPDPA  621 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCCh----HHHHHHHHHhhcCCCCccc
Confidence            4667777 9999999999999999999999999999 78888999999888876543    46666666655432     


Q ss_pred             -C-CC----ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEE
Q 013389          322 -A-SE----GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVT  372 (444)
Q Consensus       322 -~-~~----~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~  372 (444)
                       . +.    +.++||++.||+|+|+.|+++|.    .|..|+++|.|..++|+||+.
T Consensus       622 ~~~~~~~~~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~  674 (693)
T PRK00227        622 PGITATFWHGNILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK  674 (693)
T ss_pred             CCCCceEeeCcEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec
Confidence             1 11    57999999999999999999999    899999999999999999997

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.13  E-value=5.7e-10  Score=121.80  Aligned_cols=141  Identities=16%  Similarity=0.135  Sum_probs=116.9

Q ss_pred             EEEEEEe-CCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCC----CC
Q 013389           36 TLVKVDS-ARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG----RS  110 (444)
Q Consensus        36 t~V~v~~-~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~----~~  110 (444)
                      -.|+|.. +|++|+|.+++++|+.++++|..|++.+ +|.++..|.|....|.++.+..+.+.++.++.+..+.    +|
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  625 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPAPGIT  625 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcccCCCC
Confidence            4677777 9999999999999999999999999999 6666789999999998887777778888877766432    12


Q ss_pred             CCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhcC
Q 013389          111 NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKG  190 (444)
Q Consensus       111 ~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~~  190 (444)
                      ......++++|.+.||||+|+.++++|.    +|.+|++.|.+..++|+||+.++   .   +   ...+++.+..+|.+
T Consensus       626 ~~~~~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~~---~---~---r~~~~~~~~~~~~~  692 (693)
T PRK00227        626 ATFWHGNILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKPG---F---D---RATVERDVTRVLAG  692 (693)
T ss_pred             ceEeeCcEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecCc---c---c---HHHHHHHHHHHHhc
Confidence            2222348999999999999999999999    89999999999999999999852   1   1   36788888888765

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.92  E-value=1.3e-08  Score=78.20  Aligned_cols=70  Identities=37%  Similarity=0.642  Sum_probs=61.1

Q ss_pred             eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHh
Q 013389          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL  188 (444)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL  188 (444)
                      +.|.|.++|+||+|++|+++|+.+|++|.++.+.+.+++..+.|++.++ .+.++ ++++++.|++.|.+++
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~-~~~~~-~~~~~~~l~~~l~~~~   70 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDS-DGRPL-DPERIARLEEALEDAL   70 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECC-CCCcC-CHHHHHHHHHHHHhhC
Confidence            4688999999999999999999999999999999987788899999985 55553 5689999999987653

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.91  E-value=1.4e-08  Score=78.08  Aligned_cols=69  Identities=38%  Similarity=0.558  Sum_probs=61.0

Q ss_pred             EEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH
Q 013389          248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAA  317 (444)
Q Consensus       248 tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~a  317 (444)
                      +.|.|.++|+||+|++++++|+++|++|.++.+.+.+++..+.|++..+++... +++++++|++.|..+
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~l~~~l~~~   69 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPL-DPERIARLEEALEDA   69 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcC-CHHHHHHHHHHHHhh
Confidence            368899999999999999999999999999999998779999999998887763 456889999988764

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.73  E-value=4.4e-08  Score=72.82  Aligned_cols=60  Identities=17%  Similarity=0.310  Sum_probs=53.7

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHH
Q 013389           36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVI   95 (444)
Q Consensus        36 t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~   95 (444)
                      ++|+|.+||+.||-.++++++-+.||+|.+++++|||.|+..+|+|.........+|..+
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lL   60 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLL   60 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHH
Confidence            479999999999999999999999999999999999999999999998655445677653

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.62  E-value=3.6e-07  Score=72.36  Aligned_cols=66  Identities=23%  Similarity=0.462  Sum_probs=55.0

Q ss_pred             ceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhc
Q 013389          116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK  189 (444)
Q Consensus       116 ~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~  189 (444)
                      +..|++.|+||||+++.++++|+++||||.+.+..+.++++...+.|.-+        ++..++++++|.+...
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~l~~   67 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--------EDSLERLESALEELAE   67 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--------HHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--------cccHHHHHHHHHHHHH
Confidence            56899999999999999999999999999999999999999999888763        3466788888887543

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.57  E-value=5.6e-07  Score=71.26  Aligned_cols=64  Identities=22%  Similarity=0.267  Sum_probs=52.2

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhc
Q 013389           35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETI  105 (444)
Q Consensus        35 ~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~  105 (444)
                      ..+|++.|+||||+++.++++|+++||||.++++.+.+|.|.-.+.|.-+       |...+.++++|...
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~l   65 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-------EDSLERLESALEEL   65 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-------HHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-------cccHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999998888888764       44667777777653

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=98.56  E-value=1.4e-06  Score=73.18  Aligned_cols=114  Identities=19%  Similarity=0.210  Sum_probs=85.3

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCCCCCCCC
Q 013389           36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNG  115 (444)
Q Consensus        36 t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~~~~~~~  115 (444)
                      -+|.|+..||||-|+.++..|...|+||..-.|.-.+.+-...+.|.++       +...+    +|....-    ....
T Consensus         4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~-------d~A~~----~Lee~gF----~Vr~   68 (142)
T COG4747           4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP-------DEAHS----VLEEAGF----TVRE   68 (142)
T ss_pred             eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh-------HHHHH----HHHHCCc----EEEe
Confidence            4789999999999999999999999999999887666665655555442       22333    4433321    1123


Q ss_pred             ceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC-CeEEEEEEEEc
Q 013389          116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKD  164 (444)
Q Consensus       116 ~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~-~~~~dvf~V~d  164 (444)
                      .-++-|...|+||-|++|+.+|.++++|+..+..+++. ..+.-+|.+.|
T Consensus        69 ~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed  118 (142)
T COG4747          69 TDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVED  118 (142)
T ss_pred             eeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhH
Confidence            45778889999999999999999999999999999975 45555555444

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.41  E-value=1.4e-06  Score=69.15  Aligned_cols=48  Identities=19%  Similarity=0.189  Sum_probs=43.2

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEe
Q 013389           36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTD   83 (444)
Q Consensus        36 t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d   83 (444)
                      .+|++.|+|||||++.++++|+++|+||.+++.+..+|+|.-++.+..
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~   49 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEG   49 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEe
Confidence            689999999999999999999999999999999998888866666654

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.41  E-value=1.9e-06  Score=65.30  Aligned_cols=49  Identities=29%  Similarity=0.272  Sum_probs=42.4

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEecCC--eEEEEEEEEeC
Q 013389           36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGR--FFMDVFHVTDL   84 (444)
Q Consensus        36 t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g--~~~dvF~V~d~   84 (444)
                      +.|.|.++||||+|++++++|+++|+||..+++.+.++  +.+.++.+.+.
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~   51 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDE   51 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEG
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCC
Confidence            57899999999999999999999999999999987554  77766776664

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.39  E-value=3.5e-06  Score=63.79  Aligned_cols=62  Identities=19%  Similarity=0.333  Sum_probs=48.1

Q ss_pred             eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCC--eEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHH
Q 013389          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNG--RIASLIYVKDCNSGSPIEDSQQIDRIEARLRNV  187 (444)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~--~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~v  187 (444)
                      |.|.|.++||||+|++++.+|+++|+||..+.+.+..+  .....+.+.+         ....+.+.++|+++
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~   64 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD---------EEDLEKLLEELEAL   64 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE---------GHGHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC---------CCCHHHHHHHHHcc
Confidence            57899999999999999999999999999999999766  3434444444         23456667766654

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.31  E-value=4.3e-06  Score=66.36  Aligned_cols=62  Identities=11%  Similarity=0.186  Sum_probs=49.4

Q ss_pred             EEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 013389          248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEA  316 (444)
Q Consensus       248 tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~  316 (444)
                      .+|++.|+||||+.++|+..|+++|+||.+++.++.++++.-...+.-+   .   . ..+.|++.|.+
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~---~---~-~~~~l~~~l~~   63 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS---W---D-AIAKLEAALPG   63 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec---c---c-cHHHHHHHHHH
Confidence            6899999999999999999999999999999999988877655555432   1   1 24566666655

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.28  E-value=3.4e-06  Score=62.91  Aligned_cols=66  Identities=20%  Similarity=0.322  Sum_probs=55.5

Q ss_pred             EEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 013389          248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEA  316 (444)
Q Consensus       248 tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~  316 (444)
                      ++|+|.|+|+.||=.|+++++.+.|++|..+.++|.|.+++-+|+|.... ..+.  -+|..|++.|..
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~-~~~~--~rW~lLK~RL~~   66 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRP-PSIK--VRWDLLKNRLMS   66 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCC-CCCc--ccHHHHHHHHHh
Confidence            58999999999999999999999999999999999999999999998543 2221  256677777654

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.27  E-value=3.9e-06  Score=66.12  Aligned_cols=63  Identities=14%  Similarity=0.149  Sum_probs=51.3

Q ss_pred             EEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH
Q 013389          249 VVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAA  317 (444)
Q Consensus       249 vv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~a  317 (444)
                      +|+|.|+||||++++++++|+++|+||.+.+..+.++++.-.|.+.-+++.      ..+.|++.|++.
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~------~~~~l~~~l~~l   63 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSA------DSEALLKDLLFK   63 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCC------CHHHHHHHHHHH
Confidence            479999999999999999999999999999988888887777888755442      245666666553

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.27  E-value=3e-06  Score=66.76  Aligned_cols=49  Identities=14%  Similarity=0.144  Sum_probs=42.6

Q ss_pred             EEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCC
Q 013389          328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMG  376 (444)
Q Consensus       328 lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g  376 (444)
                      +.|.+.||||++++||++|+++|+||...+-++.++.-.-.|.+.-+.+
T Consensus         2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~   50 (75)
T cd04870           2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDS   50 (75)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCC
Confidence            7899999999999999999999999999999999887666777764433

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=98.03  E-value=0.00013  Score=61.52  Aligned_cols=126  Identities=21%  Similarity=0.238  Sum_probs=88.1

Q ss_pred             EEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEE
Q 013389          249 VVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVRL  328 (444)
Q Consensus       249 vv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr~~~~~~l  328 (444)
                      +|+|...++||=|+.++.+|.+.|+||..-.|.-.|+.-.-.+.|.++       + +   -.+.|+++ .-.....-++
T Consensus         5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~-------d-~---A~~~Lee~-gF~Vr~~dVl   72 (142)
T COG4747           5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP-------D-E---AHSVLEEA-GFTVRETDVL   72 (142)
T ss_pred             EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh-------H-H---HHHHHHHC-CcEEEeeeEE
Confidence            678899999999999999999999999999998887765555555332       1 1   12334332 0011223467


Q ss_pred             EEEecCCCchHHHHHHHHHHCCceEEEEEeec-CCceEEEEEEEEcCCCCCCChHHHHHHHHHHhhccc
Q 013389          329 ELCMEDRQGLLADVTRTFRENGLNVTRAEVST-ERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNL  396 (444)
Q Consensus       329 ev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T-~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~  396 (444)
                      -|...|+||=|+.|..+|.+.++|+..+-.-+ ..++|.=.|-+.          .++...+.|.++-.
T Consensus        73 aVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~e----------d~d~~~~aLed~gi  131 (142)
T COG4747          73 AVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVE----------DIDRAIKALEDAGI  131 (142)
T ss_pred             EEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhh----------HHHHHHHHHHHcCC
Confidence            78899999999999999999999998887643 445566555443          34455555555443

>PRK07431 aspartate kinase; Provisional

Probab=98.02  E-value=0.0047  Score=67.44  Aligned_cols=287  Identities=15%  Similarity=0.194  Sum_probs=159.1

Q ss_pred             eCCCccHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCCC-CCCCCceEE
Q 013389           42 SARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRS-NSFNGLTAL  119 (444)
Q Consensus        42 ~~dr~Gll~~i~~vL~~~~l~I~~A~i~t-~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~~-~~~~~~t~i  119 (444)
                      -.+++|+++++...|++.|.+|.-...++ ..+..-..|.|.+.+-     ....+.|++ +........ ....+...|
T Consensus       278 ~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d~-----~~~~~~l~~-l~~~~~~~~i~~~~~~a~I  351 (587)
T PRK07431        278 VPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENEL-----KKAEAVAEA-IAPALGGAEVLVETNVAKL  351 (587)
T ss_pred             CCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHHH-----HHHHHHHHH-HHHHcCCCcEEEeCCeEEE
Confidence            36789999999999999999998776543 2222222455543211     112222332 221110000 123456788


Q ss_pred             EEEEc---CCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhcCCCcccc
Q 013389          120 ELTGT---DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRS  196 (444)
Q Consensus       120 ~v~~~---DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~~~~~~~~  196 (444)
                      .|.|.   +.||+++++..+|+..+++|....  +.  ...-.|.|..          +..++.-+.|.+.+.-+.. . 
T Consensus       352 svvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--sS--e~~Is~vv~~----------~d~~~av~~Lh~~f~~~~~-~-  415 (587)
T PRK07431        352 SISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--TS--EVKVSCVIDA----------EDGDKALRAVCEAFELEDS-Q-  415 (587)
T ss_pred             EEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cC--CCEEEEEEcH----------HHHHHHHHHHHHHhccCCc-c-
Confidence            88886   799999999999999999997544  21  1212333332          1234555667777754221 0 


Q ss_pred             cchhhcccccchhHHhhhhhccccccccccccCCCCCCCEEEEEecCCCCeEEEEEE-ccCCccHHHHHHHHHHhCCeeE
Q 013389          197 AKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQ-CKDRTKLLFDVVCTLTDMEYVV  275 (444)
Q Consensus       197 ~~~~~~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~-~~DRpGLL~~i~~~L~~~~~nI  275 (444)
                                   ..+..++.   ..+         ..+.--|.  ..++...|++. .++.||+++++...|++++++|
T Consensus       416 -------------~~~~~~~~---~~~---------~~~v~gIa--~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~i  468 (587)
T PRK07431        416 -------------IEINPTAS---GQD---------EPEVRGVA--LDRNQAQLAIRNVPDRPGMAASIFGALAEANISV  468 (587)
T ss_pred             -------------cccCcccc---CCC---------CCcEEEEE--ccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeE
Confidence                         01111110   011         11111122  13455666665 6788999999999999999999


Q ss_pred             EEEEEEe-cC--CEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc----CCCCceEEEEEec---CCCchHHHHHHH
Q 013389          276 FHATINT-AG--ERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR----RASEGVRLELCME---DRQGLLADVTRT  345 (444)
Q Consensus       276 ~~A~I~T-~g--~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r----r~~~~~~lev~~~---DRpGLL~~Itr~  345 (444)
                      ..-.-.. .+  +...-.|.+...+      -..+.++.+.|.+.+..    -...-..|.|.+.   .+||+++++.++
T Consensus       469 d~i~~~~~~~~~~~~~isf~v~~~~------~~~~~~~l~~l~~~~~~~~i~~~~~va~VSvVG~gm~~~~gv~~ri~~a  542 (587)
T PRK07431        469 DMIVQSQRCRSDGTRDISFTVPKED------REAAQKVLRELAKQLPGAEVEDGPAIAKVSIVGAGMPGTPGVAARMFRA  542 (587)
T ss_pred             EEEEecCCCCCCCceeEEEEEcHHH------HHHHHHHHHHHHHhcCCceEEEeCCeEEEEEECCCccCCcCHHHHHHHH
Confidence            8753321 12  2233345554311      11223333333322211    0122356888876   889999999999


Q ss_pred             HHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHH
Q 013389          346 FRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKI  391 (444)
Q Consensus       346 l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l  391 (444)
                      |.+.|++|....  |   ...+..++.+....   ++.+..|.++|
T Consensus       543 L~~~~I~v~~i~--~---S~~~Is~vV~~~~~---~~av~~Lh~~f  580 (587)
T PRK07431        543 LADAGINIEMIA--T---SEIRTSCVVAEDDG---VKALQAVHQAF  580 (587)
T ss_pred             HHHCCCcEEEee--c---cceEEEEEEeHHHH---HHHHHHHHHHh
Confidence            999999996655  2   44455444332100   13455555555

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=98.02  E-value=9.8e-06  Score=63.55  Aligned_cols=65  Identities=22%  Similarity=0.249  Sum_probs=46.0

Q ss_pred             EEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013389          327 RLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGL  393 (444)
Q Consensus       327 ~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~  393 (444)
                      +|.+.++||||++++||++|+++|+||...+..+..  ....|++.-.-..|-.+...+.|+++|..
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~~l~~~l~~   65 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDP--DSGRFFMRVEFELEGFDLSREALEAAFAP   65 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecC--CCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence            378999999999999999999999999999998743  22358775432233111135666665554

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=97.96  E-value=2.4e-05  Score=63.56  Aligned_cols=47  Identities=19%  Similarity=0.233  Sum_probs=40.4

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEE
Q 013389          326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVT  372 (444)
Q Consensus       326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~  372 (444)
                      +.+.+.++||||++++||++|+++|+||...+..|.+++..-.+.+.
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~   48 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVD   48 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEE
Confidence            57899999999999999999999999999999999876554444444

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=97.96  E-value=2.7e-05  Score=63.27  Aligned_cols=63  Identities=14%  Similarity=0.192  Sum_probs=49.7

Q ss_pred             EEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCC-CCCCCCHHHHHHHHHHHHH
Q 013389          248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHID-GTPISSEPERQRVIQCLEA  316 (444)
Q Consensus       248 tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~-g~~l~~~~~~~~l~~~L~~  316 (444)
                      .+|++.|+||||++++++++|+++|+||.+.+-.+.++.+.-.+.+.-+. +.      ..+.|++.|.+
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~~~~------~~~~L~~~l~~   65 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISESNL------DFAELQEELEE   65 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCCCCC------CHHHHHHHHHH
Confidence            47899999999999999999999999999999998887776666666442 11      24566666654

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.94  E-value=2.3e-05  Score=62.28  Aligned_cols=65  Identities=20%  Similarity=0.362  Sum_probs=47.0

Q ss_pred             EEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCce--EEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013389          328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDE--ALNIFYVTDEMGNPADPKIIEAVRQKIGL  393 (444)
Q Consensus       328 lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~--a~d~FyV~d~~g~~v~~~~~~~lr~~l~~  393 (444)
                      |.+.++||||++++||++|+++|+||...+..|.+..  ..+.|+++-.-..|- ....++++++|..
T Consensus         2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~-~~~~~~l~~~l~~   68 (81)
T cd04869           2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA-GTDLDALREELEE   68 (81)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC-CCCHHHHHHHHHH
Confidence            6899999999999999999999999999999988732  446666543322331 1234555555544

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>PRK00194 hypothetical protein; Validated

Probab=97.93  E-value=2.7e-05  Score=63.37  Aligned_cols=66  Identities=21%  Similarity=0.403  Sum_probs=50.8

Q ss_pred             ceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHH
Q 013389          116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNV  187 (444)
Q Consensus       116 ~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~v  187 (444)
                      .+.+++.|+||||++++++++|+++|+||.+....+.++.....+.+.-+  +.+. +   .+.+++.|.+.
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~--~~~~-~---~~~l~~~l~~l   68 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS--ESKK-D---FAELKEELEEL   68 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec--CCCC-C---HHHHHHHHHHH
Confidence            57899999999999999999999999999999998887777766665442  2122 2   25566666653

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.90  E-value=7.5e-05  Score=59.25  Aligned_cols=62  Identities=19%  Similarity=0.151  Sum_probs=45.9

Q ss_pred             EEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecC------CEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 013389          249 VVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAG------ERAYLEFYIRHIDGTPISSEPERQRVIQCLEA  316 (444)
Q Consensus       249 vv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g------~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~  316 (444)
                      +|+|.|+||||++++|+..|+++|+||.+.+..+.+      +.+.-.+.+.-+++.      ..+++++.|++
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~------~~~~l~~~l~~   68 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGT------DLDALREELEE   68 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCC------CHHHHHHHHHH
Confidence            478999999999999999999999999999998876      444444444433221      24566666554

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>PRK00194 hypothetical protein; Validated

Probab=97.88  E-value=4e-05  Score=62.41  Aligned_cols=43  Identities=14%  Similarity=0.162  Sum_probs=37.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEE
Q 013389          325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALN  367 (444)
Q Consensus       325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d  367 (444)
                      .+.+.+.++||||++++|+++|+++|+||...+-.+.++...-
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~   45 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTM   45 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEE
Confidence            3689999999999999999999999999999999887654333

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=97.87  E-value=8.9e-05  Score=58.05  Aligned_cols=35  Identities=14%  Similarity=0.243  Sum_probs=32.8

Q ss_pred             EEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec
Q 013389          249 VVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA  283 (444)
Q Consensus       249 vv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~  283 (444)
                      +|+|.|+||||++++|++.|+++|+||.+.+..+.
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~   35 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVD   35 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeec
Confidence            47999999999999999999999999999999873

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.76  E-value=0.0002  Score=56.88  Aligned_cols=64  Identities=22%  Similarity=0.375  Sum_probs=48.1

Q ss_pred             ceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee--CCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389          116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (444)
Q Consensus       116 ~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~--~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~  186 (444)
                      .+.|.|.+.||||+|++|+.++++.|+||.+..+.+.  ++.+...|.+.-.       +.+.++.|-+.|++
T Consensus         6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~-------d~~~L~~ii~~L~~   71 (80)
T PF13291_consen    6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK-------DLEHLNQIIRKLRQ   71 (80)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES-------SHHHHHHHHHHHCT
T ss_pred             EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC-------CHHHHHHHHHHHHC
Confidence            4789999999999999999999999999999999994  5666666666542       44566666666553

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.70  E-value=0.00093  Score=66.07  Aligned_cols=114  Identities=11%  Similarity=0.056  Sum_probs=70.8

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCC--CCCC
Q 013389           37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSD--GRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG--RSNS  112 (444)
Q Consensus        37 ~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~--~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~--~~~~  112 (444)
                      +|+|.|+|||||++.++++|+++|+||.+.+.+.+  +|+|.-.+.+.-+ +...+-+++.+.+++++......  +-..
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~-~~~~~~~~l~~~l~~~~~~~~~l~i~l~~   80 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE-GFRLEESSLLAAFKSALAEKFEMTWELIL   80 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC-CCCCCHHHHHHHHHHHHHHHhCCEEEEec
Confidence            68999999999999999999999999999999874  4766545555543 21222233434444323222111  0011


Q ss_pred             CCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEe
Q 013389          113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT  151 (444)
Q Consensus       113 ~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T  151 (444)
                      ......|-|.+.-+..-|..|......-.+++.=+-+.+
T Consensus        81 ~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~vis  119 (280)
T TIGR00655        81 ADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVIS  119 (280)
T ss_pred             CCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEE
Confidence            112234555555556677888888877766655444444

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.65  E-value=0.00088  Score=66.52  Aligned_cols=116  Identities=9%  Similarity=0.055  Sum_probs=68.3

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEE--e-cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCC-
Q 013389           34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS--S-DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGR-  109 (444)
Q Consensus        34 ~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~--t-~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~-  109 (444)
                      ...+|+|.|+|||||++.++++|+++|+||.+.+.+  + .+.+|| .+.+.+......+...+.+.+++ +....... 
T Consensus         8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm-~i~~~~~~~~~~~~~~l~~~l~~-l~~~l~l~~   85 (289)
T PRK13010          8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFM-RVSFHAQSAEAASVDTFRQEFQP-VAEKFDMQW   85 (289)
T ss_pred             cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEE-EEEEEcCCCCCCCHHHHHHHHHH-HHHHhCCeE
Confidence            345899999999999999999999999999999996  4 344444 33333321112222223333333 11111110 


Q ss_pred             C-CCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEe
Q 013389          110 S-NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT  151 (444)
Q Consensus       110 ~-~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T  151 (444)
                      . ........|-|.+.-+..-|..+-.....-.+++.=+-+.+
T Consensus        86 ~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~vis  128 (289)
T PRK13010         86 AIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIIS  128 (289)
T ss_pred             EEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEE
Confidence            0 11222334555555556677778888777777665555554

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.53  E-value=0.0008  Score=53.33  Aligned_cols=63  Identities=14%  Similarity=0.192  Sum_probs=48.6

Q ss_pred             eEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec--CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 013389          247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA--GERAYLEFYIRHIDGTPISSEPERQRVIQCLE  315 (444)
Q Consensus       247 ~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~--g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~  315 (444)
                      .+.|.|.+.||||+|++|+.+++++|+||.+..+.+.  ++.+.-.|.|.=.      +.+++++|.+.|+
T Consensus         6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~------d~~~L~~ii~~L~   70 (80)
T PF13291_consen    6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK------DLEHLNQIIRKLR   70 (80)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES------SHHHHHHHHHHHC
T ss_pred             EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC------CHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999985  5677777777533      3346777777764

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.52  E-value=0.0019  Score=64.14  Aligned_cols=107  Identities=10%  Similarity=0.136  Sum_probs=64.2

Q ss_pred             eEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEE--ecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH---hc--
Q 013389          247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATIN--TAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAA---VG--  319 (444)
Q Consensus       247 ~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~--T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~a---l~--  319 (444)
                      ..+|+|.|+||||+.+.|+..|+++|+||.+.+-.  +..+.+.-.+.+.......+    ..+.|++.|.+.   +.  
T Consensus         9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~----~~~~l~~~l~~l~~~l~l~   84 (289)
T PRK13010          9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAA----SVDTFRQEFQPVAEKFDMQ   84 (289)
T ss_pred             CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCC----CHHHHHHHHHHHHHHhCCe
Confidence            46899999999999999999999999999999987  33343332222322111112    244566655442   21  


Q ss_pred             ---cCCCCceEEEEEecCCCchHHHHHHHHHHCCceEEEEE
Q 013389          320 ---RRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAE  357 (444)
Q Consensus       320 ---rr~~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~  357 (444)
                         +...+...+-|..--+..-|.+|-....+..++..-+-
T Consensus        85 ~~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~  125 (289)
T PRK13010         85 WAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVG  125 (289)
T ss_pred             EEEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEE
Confidence               11222334445555555566666666666665544333

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.49  E-value=0.001  Score=51.59  Aligned_cols=61  Identities=18%  Similarity=0.216  Sum_probs=46.5

Q ss_pred             EEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee-CCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389          119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (444)
Q Consensus       119 i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~-~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~  186 (444)
                      |.|.+.||||+|++|+.++++.|+||.+....+. ++.+...|.+.-.       +.+.++.+.+.|++
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~-------~~~~l~~i~~~L~~   63 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP-------SEEHAETIVAAVRA   63 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC-------CHHHHHHHHHHHhc
Confidence            6789999999999999999999999998888764 3555555555432       34666777776664

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.41  E-value=0.0043  Score=61.59  Aligned_cols=102  Identities=17%  Similarity=0.201  Sum_probs=63.9

Q ss_pred             CeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEe--cCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhc----
Q 013389          246 SYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINT--AGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVG----  319 (444)
Q Consensus       246 ~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T--~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~----  319 (444)
                      ...+|+|.|+||||++++|+.+|+++|+||.+.+..+  .++.+.-.+.+.- +..+.    ..+.|++.|++.-+    
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~-~~~~~----~~~~L~~~L~~l~~~l~l   79 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG-DGLIF----NLETLRADFAALAEEFEM   79 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe-CCCCC----CHHHHHHHHHHHHHHhCC
Confidence            4678999999999999999999999999999999998  6775544444432 11111    25566666654311    


Q ss_pred             ----cCCCCceEEEEEecCCCchHHHHHHHHHHCCce
Q 013389          320 ----RRASEGVRLELCMEDRQGLLADVTRTFRENGLN  352 (444)
Q Consensus       320 ----rr~~~~~~lev~~~DRpGLL~~Itr~l~e~gl~  352 (444)
                          +..++..++-|.+--+---|..+-....+..++
T Consensus        80 ~i~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~  116 (286)
T PRK06027         80 DWRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELP  116 (286)
T ss_pred             EEEEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCC
Confidence                111122334444444444555555555554443

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.40  E-value=0.00018  Score=58.18  Aligned_cols=49  Identities=20%  Similarity=0.233  Sum_probs=42.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEe
Q 013389           35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTD   83 (444)
Q Consensus        35 ~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d   83 (444)
                      ..+|+|.++||||+.+.++++|+++|.||.+...+-..|||--.+.|.-
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~   51 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDI   51 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcC
Confidence            4689999999999999999999999999999988888888765566654

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.39  E-value=0.0047  Score=61.34  Aligned_cols=113  Identities=11%  Similarity=0.036  Sum_probs=70.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccC---C
Q 013389           34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHY---G  108 (444)
Q Consensus        34 ~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t--~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~---~  108 (444)
                      ...+|+|.|+|||||+++++++|+++|+||.+.+.++  .+|.|.-.+.+.- +..+..    ++.|+++|.....   .
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~-~~~~~~----~~~L~~~L~~l~~~l~l   79 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG-DGLIFN----LETLRADFAALAEEFEM   79 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe-CCCCCC----HHHHHHHHHHHHHHhCC
Confidence            4678999999999999999999999999999999998  7776655555543 111111    3445555543321   1


Q ss_pred             C-C-CCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEe
Q 013389          109 R-S-NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT  151 (444)
Q Consensus       109 ~-~-~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T  151 (444)
                      . . ........|-|.+.-+-.-|..+........++..=+-+.|
T Consensus        80 ~i~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~~~i~~vis  124 (286)
T PRK06027         80 DWRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVIS  124 (286)
T ss_pred             EEEEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCCcEEEEEEE
Confidence            0 0 11112234444444445566667777777666555444555

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.38  E-value=0.0052  Score=60.78  Aligned_cols=105  Identities=14%  Similarity=0.213  Sum_probs=69.2

Q ss_pred             EEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec--CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH-H---hc---
Q 013389          249 VVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA--GERAYLEFYIRHIDGTPISSEPERQRVIQCLEA-A---VG---  319 (444)
Q Consensus       249 vv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~--g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~-a---l~---  319 (444)
                      +|+|.|+||||+.+.|++.|+++|+||.+.+-+..  ++++.-.+.+.-+ +..+    ..+.|++.|.+ .   +.   
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~-~~~~----~~~~l~~~l~~~~~~~~~l~i   76 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE-GFRL----EESSLLAAFKSALAEKFEMTW   76 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC-CCCC----CHHHHHHHHHHHHHHHhCCEE
Confidence            68999999999999999999999999999998884  4666655555433 2222    24556666555 2   11   


Q ss_pred             --cCCCCceEEEEEecCCCchHHHHHHHHHHCCceEEEEEe
Q 013389          320 --RRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEV  358 (444)
Q Consensus       320 --rr~~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i  358 (444)
                        ....+..++-|.+--+-.-|.+|-....+..++..-+-+
T Consensus        77 ~l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~v  117 (280)
T TIGR00655        77 ELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALV  117 (280)
T ss_pred             EEecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEE
Confidence              011223455555556666777888887777665443333

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.37  E-value=0.00028  Score=57.07  Aligned_cols=68  Identities=19%  Similarity=0.289  Sum_probs=51.7

Q ss_pred             ceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhc
Q 013389          116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK  189 (444)
Q Consensus       116 ~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~  189 (444)
                      ...|+|.|.||||+.+.++++|+++|+||.+-.-.--.++....+.|.-+.  ..    .-...++++|.....
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~--~~----~d~~~lr~~l~~~~~   70 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISK--EV----VDFAALRDELAAEGK   70 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCCh--Hh----ccHHHHHHHHHHHHH
Confidence            468999999999999999999999999999877666678887777776531  11    123566776665544

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.26  E-value=0.0028  Score=49.16  Aligned_cols=61  Identities=10%  Similarity=0.127  Sum_probs=47.4

Q ss_pred             EEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec-CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 013389          250 VNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA-GERAYLEFYIRHIDGTPISSEPERQRVIQCLEA  316 (444)
Q Consensus       250 v~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~-g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~  316 (444)
                      +.|.+.||||+|++|+.++++.|.||.+....+. .+.+...|.+.-.      +.++++++.+.|++
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~------~~~~l~~i~~~L~~   63 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP------SEEHAETIVAAVRA   63 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC------CHHHHHHHHHHHhc
Confidence            6789999999999999999999999998888765 4666666666433      23467777777654

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.23  E-value=0.0077  Score=59.79  Aligned_cols=106  Identities=11%  Similarity=0.167  Sum_probs=68.0

Q ss_pred             eEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec--CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH---hc--
Q 013389          247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA--GERAYLEFYIRHIDGTPISSEPERQRVIQCLEAA---VG--  319 (444)
Q Consensus       247 ~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~--g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~a---l~--  319 (444)
                      ..+|+|.|+||||+.+++++.|+++|+||.+.+-.+.  ++.+.-.+.+.-+.+.      ..+.|++.|.+.   +.  
T Consensus         7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~------~~~~L~~~L~~l~~~l~l~   80 (286)
T PRK13011          7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGL------DEDALRAGFAPIAARFGMQ   80 (286)
T ss_pred             eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCC------CHHHHHHHHHHHHHHhCcE
Confidence            4689999999999999999999999999999988753  3455544555434332      245566655543   11  


Q ss_pred             ---cCCCCceEEEEEecCCCchHHHHHHHHHHCCceEEEEEe
Q 013389          320 ---RRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEV  358 (444)
Q Consensus       320 ---rr~~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i  358 (444)
                         +...+...|-|.+--+---|..+...+.+..++.+-+-+
T Consensus        81 i~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~v  122 (286)
T PRK13011         81 WELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGV  122 (286)
T ss_pred             EEEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEE
Confidence               112223345555555666677777777766655444443

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=97.21  E-value=0.0029  Score=50.04  Aligned_cols=68  Identities=7%  Similarity=0.152  Sum_probs=50.5

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHCCceEEEEEee-cCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhhcccccc
Q 013389          326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVS-TERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVK  399 (444)
Q Consensus       326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~-T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~~  399 (444)
                      +.+.+...|+||+|++|+.+|+.+|.||.+..+. |..........+..  |   ++..+++|.++|.+. .+|.
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~--~---~~~~i~qi~kQL~KL-idV~   71 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV--C---TENEATLLVSQLKKL-INVL   71 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE--C---CHHHHHHHHHHHhCC-cCEE
Confidence            4688999999999999999999999999999987 44333333333322  2   246788999998883 3443

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=97.17  E-value=0.0029  Score=50.24  Aligned_cols=66  Identities=20%  Similarity=0.369  Sum_probs=47.0

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCc-eEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013389          326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERD-EALNIFYVTDEMGNPADPKIIEAVRQKIGL  393 (444)
Q Consensus       326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~-~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~  393 (444)
                      +.+.+...|+||.|++|...|+++|+||.+......+. ...=+||| |.+|. .+...+..+-+.|..
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~v-d~~~~-~~~~~~~~~l~~l~~   68 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFI-DFEGH-IEDPNVAEALEELKR   68 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEE-EEECC-CCCHHHHHHHHHHHH
Confidence            35677889999999999999999999999998776543 45567777 34454 333444444444444

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.16  E-value=0.0038  Score=47.39  Aligned_cols=61  Identities=25%  Similarity=0.373  Sum_probs=42.0

Q ss_pred             EEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee-----CCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389          119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-----NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (444)
Q Consensus       119 i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~-----~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~  186 (444)
                      +.|..+|+||+|++|+.+|+++|+||.+......     .+.+...|.+.-.       +.+.++.+.+.|.+
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~-------~~~~l~~l~~~l~~   66 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR-------GAEHIEEIIAALRE   66 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence            3578899999999999999999999998876543     2333333433321       34555666666654

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.13  E-value=0.011  Score=58.70  Aligned_cols=111  Identities=9%  Similarity=0.013  Sum_probs=69.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccC---CC
Q 013389           35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHY---GR  109 (444)
Q Consensus        35 ~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t--~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~---~~  109 (444)
                      ..+|+|.|+|||||+++++++|+++|+||.+.+.++  .++.|.-.+.+..+.+  .+    ...|+++|.....   ..
T Consensus         7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~--~~----~~~L~~~L~~l~~~l~l~   80 (286)
T PRK13011          7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEG--LD----EDALRAGFAPIAARFGMQ   80 (286)
T ss_pred             eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCC--CC----HHHHHHHHHHHHHHhCcE
Confidence            467999999999999999999999999999999974  4555554555554433  11    2334444433211   10


Q ss_pred             -C-CCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEe
Q 013389          110 -S-NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT  151 (444)
Q Consensus       110 -~-~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T  151 (444)
                       . ........|-|.+.-+..-|..+........++..=+-+.|
T Consensus        81 i~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~vis  124 (286)
T PRK13011         81 WELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVS  124 (286)
T ss_pred             EEEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEE
Confidence             0 11111234555555566677778888777776655555555

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=97.11  E-value=0.0025  Score=57.55  Aligned_cols=70  Identities=23%  Similarity=0.424  Sum_probs=52.7

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccccc
Q 013389          326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKE  400 (444)
Q Consensus       326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~~~  400 (444)
                      ..+.|...|+||.|++|+.+|+++|+||.+..+...++...-.+.++- +|   ++..+++|.++|.+. .+|.+
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V-~~---d~~~i~qi~kQl~Kl-i~V~~   71 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVV-VG---DDKVLEQITKQLNKL-VDVIK   71 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEE-EC---CHHHHHHHHHHHhcC-ccEEE
Confidence            468899999999999999999999999999988766544333333331 13   357899999999984 34443

acetohydroxyacid synthase is a synonym.

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=97.11  E-value=0.0038  Score=49.41  Aligned_cols=64  Identities=6%  Similarity=0.112  Sum_probs=46.4

Q ss_pred             eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEe-eCCeEE-EEEEEEcCCCCCCCCChHHHHHHHHHHHHHh
Q 013389          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIA-SLIYVKDCNSGSPIEDSQQIDRIEARLRNVL  188 (444)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T-~~~~~~-dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL  188 (444)
                      ..|.+...|+||.|++|+++|+..|.||.+..+.- .+.... -++.+..        +++..+.|.++|.+..
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~--------~~~~i~qi~kQL~KLi   68 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC--------TENEATLLVSQLKKLI   68 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC--------CHHHHHHHHHHHhCCc
Confidence            46899999999999999999999999999988774 333332 2333322        2456677888777643

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=97.07  E-value=0.0021  Score=58.97  Aligned_cols=65  Identities=20%  Similarity=0.385  Sum_probs=48.9

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhhc
Q 013389          326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLS  394 (444)
Q Consensus       326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~  394 (444)
                      ..+.|.+.|+||+|++||.+|+++|+||.+..+..........+.+.-    |-++..+++|+++|.+.
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv----~~~~~~ieqL~kQL~KL   67 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVV----PGDDRTIEQLTKQLYKL   67 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEE----ECCHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999753333333444432    22234478888888885

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.05  E-value=0.0031  Score=49.34  Aligned_cols=59  Identities=24%  Similarity=0.419  Sum_probs=43.1

Q ss_pred             EEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389          118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (444)
Q Consensus       118 ~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~  186 (444)
                      .|.|.+.||+|+|++|+.++++.|+||.+.++.+. +.    ++++-.     +.+.+.++.+-++|++
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~----i~l~i~-----v~~~~~L~~li~~L~~   60 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR----IYLNFP-----TIEFEKLQTLMPEIRR   60 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce----EEEEeE-----ecCHHHHHHHHHHHhC
Confidence            47899999999999999999999999999999775 33    222221     1134556666666654

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=97.02  E-value=0.0023  Score=46.97  Aligned_cols=46  Identities=17%  Similarity=0.155  Sum_probs=38.6

Q ss_pred             EEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC-CeEEEEEEEEc
Q 013389          119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKD  164 (444)
Q Consensus       119 i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~-~~~~dvf~V~d  164 (444)
                      +.+..+|+||.|++++.+|.++|+||.+..+...+ +.....|.+.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            35788999999999999999999999999988765 56666666654

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=96.95  E-value=0.0055  Score=56.24  Aligned_cols=65  Identities=17%  Similarity=0.271  Sum_probs=48.3

Q ss_pred             eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee--CCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhc
Q 013389          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK  189 (444)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~--~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~  189 (444)
                      ..+.+.+.|+||+|++|+++|+.+|+||.+..+...  .+.....+.+..        ++..++.|.++|.+...
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~--------~~~~ieqL~kQL~KLid   69 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPG--------DDRTIEQLTKQLYKLVN   69 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC--------CHHHHHHHHHHHHHHhH
Confidence            478999999999999999999999999999998652  344434444332        22336788888887554

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=96.95  E-value=0.0074  Score=45.78  Aligned_cols=67  Identities=19%  Similarity=0.173  Sum_probs=44.4

Q ss_pred             EEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC---ceEEEEEEEEcCCCCCCChHHHHHHHHHHhhcccc
Q 013389          328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER---DEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLK  397 (444)
Q Consensus       328 lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g---~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~  397 (444)
                      +.|..+|+||+|++|+++|++.|++|.........   ....-.++++-. . + +..+++.+.+.|......
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~-~-~-~~~~l~~l~~~l~~~g~~   70 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLE-T-R-GAEHIEEIIAALREAGYD   70 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEE-e-C-CHHHHHHHHHHHHHcCCE
Confidence            45788999999999999999999999988876432   122222333211 1 1 235667777777664433

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.94  E-value=0.0056  Score=50.44  Aligned_cols=65  Identities=20%  Similarity=0.280  Sum_probs=47.2

Q ss_pred             CceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC-Ce-EEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHh
Q 013389          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GR-IASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL  188 (444)
Q Consensus       115 ~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~-~~-~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL  188 (444)
                      ....|.+...|+||+|++|+++|+..|.||.+..+--.. .. ..-++.+.+         ++.+++|.++|.+..
T Consensus         7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~---------~~~i~Qi~kQL~KLi   73 (96)
T PRK08178          7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVND---------DQRLEQMISQIEKLE   73 (96)
T ss_pred             CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcC---------chHHHHHHHHHhCCc
Confidence            456799999999999999999999999999998776432 22 222332321         246778888888644

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=96.93  E-value=0.0037  Score=47.70  Aligned_cols=39  Identities=13%  Similarity=0.152  Sum_probs=35.1

Q ss_pred             eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCe
Q 013389          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGR  155 (444)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~  155 (444)
                      ..+.|..+|+||.|++|+.+|+++|+||.+..+...++.
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~   40 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF   40 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC
Confidence            468899999999999999999999999999998776554

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=96.92  E-value=0.0072  Score=46.06  Aligned_cols=45  Identities=24%  Similarity=0.448  Sum_probs=37.9

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEE
Q 013389          326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVT  372 (444)
Q Consensus       326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~  372 (444)
                      ..+.|...|+||.|++|+.+|.++|+||.+.-+...+++  .+|.+.
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~   46 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI   46 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence            357889999999999999999999999999998776664  555553

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=96.90  E-value=0.005  Score=49.46  Aligned_cols=67  Identities=15%  Similarity=0.206  Sum_probs=52.1

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhhcc
Q 013389          326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSN  395 (444)
Q Consensus       326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~  395 (444)
                      ..+.+...|+||+|++|+-.|+.+|+||.+..+....+.....+-+.-..|   ++..++++.++|.+.+
T Consensus         3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~---d~~~ieqI~kQL~Kli   69 (84)
T PRK13562          3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQ---DDTSLHILIKKLKQQI   69 (84)
T ss_pred             EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCC---CHHHHHHHHHHHhCCc
Confidence            358889999999999999999999999999999866566555554432112   2467899999998843

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=96.89  E-value=0.0036  Score=60.38  Aligned_cols=43  Identities=14%  Similarity=0.159  Sum_probs=38.6

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe--cCCeEE
Q 013389           34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFM   76 (444)
Q Consensus        34 ~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t--~~g~~~   76 (444)
                      +..++++.|+|++||++.|++.|..+||||.++..++  .+|||+
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FF   50 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFF   50 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEE
Confidence            4679999999999999999999999999999999997  356665

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.87  E-value=0.0099  Score=44.93  Aligned_cols=62  Identities=21%  Similarity=0.396  Sum_probs=45.8

Q ss_pred             EEEEEecCCCchHHHHHHHHHHCCceEEEEEeecC-CceEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013389          327 RLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTE-RDEALNIFYVTDEMGNPADPKIIEAVRQKIGL  393 (444)
Q Consensus       327 ~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~-g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~  393 (444)
                      .+.+.+.|+||+|.+|+++|+++|++|......+. ++.....++..+.    .+ ..++.+.++|..
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~l~~~l~~   64 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG----DD-DVIEQIVKQLNK   64 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC----CH-HHHHHHHHHHhC
Confidence            47888999999999999999999999999998875 4333333333332    13 556777777765

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.84  E-value=0.0079  Score=45.27  Aligned_cols=44  Identities=23%  Similarity=0.393  Sum_probs=37.9

Q ss_pred             EEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC--ceEEEEEEE
Q 013389          328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER--DEALNIFYV  371 (444)
Q Consensus       328 lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g--~~a~d~FyV  371 (444)
                      +.+.+.|++|+|++|+++|++.|++|....+...+  +.+.-.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence            67899999999999999999999999999998765  456556666

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.84  E-value=0.0095  Score=46.24  Aligned_cols=62  Identities=26%  Similarity=0.367  Sum_probs=45.0

Q ss_pred             EEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee-CCeEEEEEEEEcCCCCCCCCChH-HHHHHHHHHHH
Q 013389          118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQ-QIDRIEARLRN  186 (444)
Q Consensus       118 ~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~-~~~~~dvf~V~d~~~g~~i~~~~-r~~~i~~~L~~  186 (444)
                      .+.+.+.|+||++++|+.+|+++|+||......+. ++.+.-.|.+.-.       +.+ .++.|.+.|++
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~-------~~~~~l~~l~~~L~~   65 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS-------TMNGDIDELLEELRE   65 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC-------chHHHHHHHHHHHhc
Confidence            57899999999999999999999999999876553 3444444555432       223 55666666664

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=96.83  E-value=0.0051  Score=48.09  Aligned_cols=59  Identities=17%  Similarity=0.267  Sum_probs=43.0

Q ss_pred             EEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 013389          249 VVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEA  316 (444)
Q Consensus       249 vv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~  316 (444)
                      .+.|.+.||+|+|++|+.++++.|+||.+..+.+. +...  |-+.-.      +.++++.+.+.|.+
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i~--l~i~v~------~~~~L~~li~~L~~   60 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRIY--LNFPTI------EFEKLQTLMPEIRR   60 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-CeEE--EEeEec------CHHHHHHHHHHHhC
Confidence            47899999999999999999999999999998776 4422  222211      23356666666543

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.82  E-value=0.0061  Score=55.27  Aligned_cols=70  Identities=23%  Similarity=0.432  Sum_probs=51.1

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccccc
Q 013389          326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKE  400 (444)
Q Consensus       326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~~~  400 (444)
                      ..+.|...|+||.|++|+.+|+++|+||.+..+....+...-.+.++- .|   ++..++++.++|.+. .+|.+
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V-~~---~~~~i~qi~kQl~KL-idV~~   72 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVT-SG---DEQVIEQITKQLNKL-IDVLK   72 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEE-EC---CHHHHHHHHHHHhcc-ccEEE
Confidence            468899999999999999999999999999988654433333233321 12   357789999999884 34443

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=96.81  E-value=0.0039  Score=45.75  Aligned_cols=46  Identities=26%  Similarity=0.488  Sum_probs=38.5

Q ss_pred             EEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC-ceEEEEEEEEc
Q 013389          328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER-DEALNIFYVTD  373 (444)
Q Consensus       328 lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g-~~a~d~FyV~d  373 (444)
                      +++...|+||.|.++++.|.++|+||....+.+.+ +++.-.|-+.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            46788999999999999999999999999987655 66777776643

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=96.79  E-value=0.01  Score=45.30  Aligned_cols=62  Identities=16%  Similarity=0.245  Sum_probs=44.5

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC--ceEEEEEEEEcCCCCCCChHHHHHHHHHHhhc
Q 013389          326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER--DEALNIFYVTDEMGNPADPKIIEAVRQKIGLS  394 (444)
Q Consensus       326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g--~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~  394 (444)
                      +.+.+..+|+||.|++|++.|+++|++|.........  ....-.|.+.+.       ...+.+.+.|.+.
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~-------~~~~~~~~~L~~~   65 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQ-------EDRERAKEILKEA   65 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCH-------HHHHHHHHHHHHc
Confidence            4578899999999999999999999999988776542  234445555411       2455666666554

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=96.78  E-value=0.0084  Score=48.18  Aligned_cols=65  Identities=20%  Similarity=0.244  Sum_probs=47.5

Q ss_pred             eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC-CeEE-EEEEEEcCCCCCCCCChHHHHHHHHHHHHHh
Q 013389          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIA-SLIYVKDCNSGSPIEDSQQIDRIEARLRNVL  188 (444)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~-~~~~-dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL  188 (444)
                      ..|.+...|+||.|++|+++|+.+|+||.+..+.... ..+. -++.+.-   |    ++..+++|.++|.+..
T Consensus         3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~---~----d~~~ieqI~kQL~Kli   69 (84)
T PRK13562          3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDI---Q----DDTSLHILIKKLKQQI   69 (84)
T ss_pred             EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeC---C----CHHHHHHHHHHHhCCc
Confidence            3688999999999999999999999999998887543 3332 3333321   1    3456678888887644

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.71  E-value=0.01  Score=46.97  Aligned_cols=67  Identities=18%  Similarity=0.279  Sum_probs=49.2

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecC-CceEEEEEEEEcCCCCCCChHHHHHHHHHHhhcccccc
Q 013389          326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTE-RDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVK  399 (444)
Q Consensus       326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~-g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~~  399 (444)
                      +.+.+...++||.|++|+.+|+.+|.||.+..+.-. .......-.+..      ++..+++|.++|.+ +..|.
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~------~~~~i~ql~kQL~K-L~dV~   71 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA------SERPIDLLSSQLNK-LVDVA   71 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC------CCchHHHHHHHHhc-CcCeE
Confidence            568999999999999999999999999999999643 222333322322      24567888888887 43443

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.71  E-value=0.012  Score=48.54  Aligned_cols=70  Identities=20%  Similarity=0.251  Sum_probs=54.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccccc
Q 013389          325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKE  400 (444)
Q Consensus       325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~~~  400 (444)
                      ...|.+...|+||+|++|+-.|+.+|.||.+..+.-.+......+.+.-.     ++..++++.++|.+. ..|.+
T Consensus         8 ~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-----~~~~i~Qi~kQL~KL-idVik   77 (96)
T PRK08178          8 NVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-----DDQRLEQMISQIEKL-EDVLK   77 (96)
T ss_pred             CEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-----CchHHHHHHHHHhCC-cCEEE
Confidence            57899999999999999999999999999999997555554444444321     236889999999984 45544

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=96.70  E-value=0.0041  Score=60.04  Aligned_cols=38  Identities=11%  Similarity=0.201  Sum_probs=35.4

Q ss_pred             CeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec
Q 013389          246 SYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA  283 (444)
Q Consensus       246 ~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~  283 (444)
                      ...++++.|+|+||+.+.|++.|+++|+||.++.-++.
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D   43 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDD   43 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccc
Confidence            56899999999999999999999999999999998863

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.62  E-value=0.015  Score=52.51  Aligned_cols=65  Identities=17%  Similarity=0.222  Sum_probs=49.0

Q ss_pred             eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC--CeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhc
Q 013389          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN--GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK  189 (444)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~--~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~  189 (444)
                      ..+.|...|+||.|++|+++|+++|+||.+..+..++  +...-+|.|..        ++...+.|.++|.+...
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~--------d~~~i~qi~kQl~Kli~   68 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG--------DDKVLEQITKQLNKLVD   68 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhcCcc
Confidence            4688999999999999999999999999998877654  34444444432        24567788888886443

acetohydroxyacid synthase is a synonym.

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.61  E-value=0.016  Score=52.64  Aligned_cols=65  Identities=20%  Similarity=0.274  Sum_probs=49.0

Q ss_pred             eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC--CeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhc
Q 013389          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN--GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK  189 (444)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~--~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~  189 (444)
                      ..+.|...|+||.|++|+++|+.+|+||.+..+....  +...-++.|..        +++.+++|.++|.+...
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~--------~~~~i~qi~kQl~KLid   69 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG--------DEQVIEQITKQLNKLID   69 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhcccc
Confidence            4688999999999999999999999999998776543  34444444432        34567788888887543

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.60  E-value=0.016  Score=44.59  Aligned_cols=63  Identities=21%  Similarity=0.283  Sum_probs=43.2

Q ss_pred             EEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee-CCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389          118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (444)
Q Consensus       118 ~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~-~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~  186 (444)
                      -|.+.+.|+||++++++.+|+++|+||......+. ++......+++...      +.+.++.+-+.|.+
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~------~~~~l~~~i~~L~~   65 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHET------SEAALNAALAEIEA   65 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccC------CHHHHHHHHHHHHc
Confidence            47888999999999999999999999998877554 32333343444321      34455555555553

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.56  E-value=0.0079  Score=46.40  Aligned_cols=63  Identities=22%  Similarity=0.357  Sum_probs=44.9

Q ss_pred             EEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCc-eEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013389          327 RLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERD-EALNIFYVTDEMGNPADPKIIEAVRQKIGL  393 (444)
Q Consensus       327 ~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~-~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~  393 (444)
                      .+.+.+.|+||+|.+|+++|.+.|++|......+..+ ......++++    ..+...++++-+.|..
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~----~~~~~~l~~~i~~L~~   65 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTH----ETSEAALNAALAEIEA   65 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEc----cCCHHHHHHHHHHHHc
Confidence            5788999999999999999999999999998765432 2223333332    2234566666666665

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.54  E-value=0.015  Score=43.69  Aligned_cols=58  Identities=12%  Similarity=0.147  Sum_probs=43.4

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCceEEEEEEEecC--CeEEEEEEEEeCCCCCCCchHHHHHHHH
Q 013389           38 VKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDG--RFFMDVFHVTDLNGNKLTDESVISYIEQ  100 (444)
Q Consensus        38 V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~--g~~~dvF~V~d~~g~~~~~~~~~~~i~~  100 (444)
                      +.+...|++|++++++++|+++|+||....+...+  |...-.|.+.+.     ...++++.|++
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~-----~~~~l~~~l~~   61 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP-----VPEEVLEELKA   61 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCC-----CCHHHHHHHHc
Confidence            56889999999999999999999999999987643  666656666331     13445555553

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>PRK07431 aspartate kinase; Provisional

Probab=96.53  E-value=1.1  Score=48.92  Aligned_cols=209  Identities=14%  Similarity=0.143  Sum_probs=122.6

Q ss_pred             CCeEEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCC-
Q 013389           33 PTATLVKVDSA---RRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG-  108 (444)
Q Consensus        33 ~~~t~V~v~~~---dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~-  108 (444)
                      .+..+|++.+.   +.+|+++++.++|++.|.+|.... ++  +..+ .|.|...+.     ++..+.|++.+...... 
T Consensus       346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~-sS--e~~I-s~vv~~~d~-----~~av~~Lh~~f~~~~~~~  416 (587)
T PRK07431        346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS-TS--EVKV-SCVIDAEDG-----DKALRAVCEAFELEDSQI  416 (587)
T ss_pred             CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE-cC--CCEE-EEEEcHHHH-----HHHHHHHHHHhccCCccc
Confidence            46788888886   789999999999999999996554 22  2222 344443222     34556677666433211 


Q ss_pred             --CC-------------CCCCCceEEEEE-EcCCcchHHHHHHHHHHCCCeEEEEEEEe-eC--CeEEEEEEEEcCCCCC
Q 013389          109 --RS-------------NSFNGLTALELT-GTDRVGLLSEVFAVLADLQCSVVEAKVWT-HN--GRIASLIYVKDCNSGS  169 (444)
Q Consensus       109 --~~-------------~~~~~~t~i~v~-~~DrpGLl~~i~~vL~~~~~~I~~A~i~T-~~--~~~~dvf~V~d~~~g~  169 (444)
                        .|             ....+...|++. .++.||.++++...|+++|++|..-.... ++  +...-.|.+..     
T Consensus       417 ~~~~~~~~~~~~~v~gIa~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~-----  491 (587)
T PRK07431        417 EINPTASGQDEPEVRGVALDRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPK-----  491 (587)
T ss_pred             ccCccccCCCCCcEEEEEccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcH-----
Confidence              11             122333445544 46789999999999999999999653321 12  12222344332     


Q ss_pred             CCCChHHHHHHHHHHHHHhcCCCcccccchhhcccccchhHHhhhhhccccccccccccCCCCCCCEEEEEecCCCCeEE
Q 013389          170 PIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSV  249 (444)
Q Consensus       170 ~i~~~~r~~~i~~~L~~vL~~~~~~~~~~~~~~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tv  249 (444)
                           +.+....+.+.+ |..+..                                        .-.+.+    +++...
T Consensus       492 -----~~~~~~~~~l~~-l~~~~~----------------------------------------~~~i~~----~~~va~  521 (587)
T PRK07431        492 -----EDREAAQKVLRE-LAKQLP----------------------------------------GAEVED----GPAIAK  521 (587)
T ss_pred             -----HHHHHHHHHHHH-HHHhcC----------------------------------------CceEEE----eCCeEE
Confidence                 111222222222 111000                                        011222    235678


Q ss_pred             EEEEcc---CCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHh
Q 013389          250 VNVQCK---DRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAV  318 (444)
Q Consensus       250 v~V~~~---DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al  318 (444)
                      |.+.+.   .+||++.++..+|.+.|++|....  |  ....-.|.|..         +..++..+.|.+.+
T Consensus       522 VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~--~--S~~~Is~vV~~---------~~~~~av~~Lh~~f  580 (587)
T PRK07431        522 VSIVGAGMPGTPGVAARMFRALADAGINIEMIA--T--SEIRTSCVVAE---------DDGVKALQAVHQAF  580 (587)
T ss_pred             EEEECCCccCCcCHHHHHHHHHHHCCCcEEEee--c--cceEEEEEEeH---------HHHHHHHHHHHHHh
Confidence            888885   889999999999999999996544  2  22333355542         24556666666555

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.53  E-value=0.021  Score=43.08  Aligned_cols=62  Identities=18%  Similarity=0.274  Sum_probs=43.4

Q ss_pred             EEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee-CCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389          118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (444)
Q Consensus       118 ~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~-~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~  186 (444)
                      .+.+.+.|+||++++|+.+|++++++|.+....+. ++......+..+..      + +.++.+.+.|.+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~l~~~l~~   64 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGD------D-DVIEQIVKQLNK   64 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECC------H-HHHHHHHHHHhC
Confidence            46788999999999999999999999999988775 33333333333311      2 445556666553

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.51  E-value=0.017  Score=43.60  Aligned_cols=33  Identities=27%  Similarity=0.442  Sum_probs=30.4

Q ss_pred             EEEEecCCCchHHHHHHHHHHCCceEEEEEeec
Q 013389          328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVST  360 (444)
Q Consensus       328 lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T  360 (444)
                      +.+.+.||||.|.+|++.|+++|++|.......
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~   34 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR   34 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence            678899999999999999999999999998765

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=96.47  E-value=0.017  Score=45.31  Aligned_cols=63  Identities=22%  Similarity=0.305  Sum_probs=45.4

Q ss_pred             EEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCc-eEEEEEEEEcCCCCCCChHHHHHHHHHHhhc
Q 013389          328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERD-EALNIFYVTDEMGNPADPKIIEAVRQKIGLS  394 (444)
Q Consensus       328 lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~-~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~  394 (444)
                      +-+...|+||-|++|-..|+++|+|+++.+...... .-.=.||| |.+|.   +..++++-++|...
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffv-d~~~~---~~~~~~~l~~L~~~   66 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFV-DCEVD---RGDLDQLISSLRRV   66 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEE-EEEcC---hHHHHHHHHHHHHh
Confidence            445568999999999999999999999999976554 45667777 66672   33344444555443

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=96.47  E-value=0.026  Score=43.07  Aligned_cols=36  Identities=22%  Similarity=0.297  Sum_probs=32.6

Q ss_pred             eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee
Q 013389          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH  152 (444)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~  152 (444)
                      +.+.+..+|+||.|++++..|+++|+||.+......
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~   37 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI   37 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence            568889999999999999999999999998877664

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.46  E-value=0.012  Score=45.71  Aligned_cols=63  Identities=19%  Similarity=0.183  Sum_probs=45.4

Q ss_pred             EEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC-ceEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013389          327 RLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER-DEALNIFYVTDEMGNPADPKIIEAVRQKIGL  393 (444)
Q Consensus       327 ~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g-~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~  393 (444)
                      .+.+.+.||||+|++|++.+++.|++|......+.. +.+.=.|-+.-.   .. +..++.|-++|..
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~---~~-~~~l~~l~~~L~~   65 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS---TM-NGDIDELLEELRE   65 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC---ch-HHHHHHHHHHHhc
Confidence            588999999999999999999999999999876543 445555555321   11 1256666666655

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=96.41  E-value=0.025  Score=44.16  Aligned_cols=64  Identities=22%  Similarity=0.352  Sum_probs=46.1

Q ss_pred             EEEecCCCchHHHHHHHHHHCCceEEEEEeecC-CceEEEEEEEEcCCCCCCChHHHHHHHHHHhhc
Q 013389          329 ELCMEDRQGLLADVTRTFRENGLNVTRAEVSTE-RDEALNIFYVTDEMGNPADPKIIEAVRQKIGLS  394 (444)
Q Consensus       329 ev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~-g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~  394 (444)
                      -+...|+||-|++|...|+++|+||.+.+..-. +....=.||| +..|.+ ++...+.+-+.|.+.
T Consensus         3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~i-d~~~~~-~~~~~~~~l~~l~~~   67 (75)
T cd04880           3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFV-DFEGHI-DDPDVKEALEELKRV   67 (75)
T ss_pred             EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEE-EEECCC-CCHHHHHHHHHHHHh
Confidence            345689999999999999999999999977644 3467777888 455642 234455555555553

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.31  E-value=0.024  Score=44.89  Aligned_cols=62  Identities=18%  Similarity=0.247  Sum_probs=45.8

Q ss_pred             eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee-CC-eEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHH
Q 013389          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NG-RIASLIYVKDCNSGSPIEDSQQIDRIEARLRNV  187 (444)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~-~~-~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~v  187 (444)
                      +.+.+...|+||.|++++++|...|.||.+..+.-. ++ ...-++.|.+   .      ..++.|.++|.+.
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~---~------~~i~ql~kQL~KL   67 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVAS---E------RPIDLLSSQLNKL   67 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECC---C------chHHHHHHHHhcC
Confidence            578999999999999999999999999999888753 33 3333444422   2      3356777777764

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.28  E-value=0.02  Score=42.79  Aligned_cols=35  Identities=23%  Similarity=0.409  Sum_probs=30.8

Q ss_pred             EEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC
Q 013389          328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER  362 (444)
Q Consensus       328 lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g  362 (444)
                      +.+..+||||-|++++.+|.++|+||.+.......
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~   36 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK   36 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence            67788999999999999999999999988775544

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.28  E-value=0.019  Score=44.07  Aligned_cols=58  Identities=28%  Similarity=0.476  Sum_probs=40.7

Q ss_pred             EEEEecCCCchHHHHHHHHHHCCceEEEEEeec--CCceEEEEEEEEcCCCCCCChHHHHHHHH
Q 013389          328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVST--ERDEALNIFYVTDEMGNPADPKIIEAVRQ  389 (444)
Q Consensus       328 lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T--~g~~a~d~FyV~d~~g~~v~~~~~~~lr~  389 (444)
                      +-+...|+||.+++|++.|+++|+||.......  .++.+.-+|.+.   + +...+.++.|++
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~---~-~~~~~~~~~l~~   61 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVD---E-PVPDEVLEELRA   61 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeC---C-CCCHHHHHHHHc
Confidence            346789999999999999999999999888755  345555555442   3 333344455544

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.25  E-value=0.015  Score=43.44  Aligned_cols=46  Identities=22%  Similarity=0.348  Sum_probs=36.2

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEE
Q 013389           37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSD--GRFFMDVFHVT   82 (444)
Q Consensus        37 ~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~--~g~~~dvF~V~   82 (444)
                      ++.+.-+|+||-|++++++|+++|.||...+.+..  .|...-.|.+.
T Consensus         1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve   48 (65)
T cd04882           1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTE   48 (65)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeC
Confidence            36788999999999999999999999998887653  25554344443

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=96.15  E-value=0.038  Score=42.74  Aligned_cols=34  Identities=15%  Similarity=0.227  Sum_probs=30.1

Q ss_pred             EEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee
Q 013389          119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH  152 (444)
Q Consensus       119 i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~  152 (444)
                      +.+.-+|+||-|++++.+|+++|+||.+......
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~   35 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE   35 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence            6788999999999999999999999998865543

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.10  E-value=0.037  Score=41.84  Aligned_cols=36  Identities=36%  Similarity=0.518  Sum_probs=32.3

Q ss_pred             EEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC
Q 013389          327 RLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER  362 (444)
Q Consensus       327 ~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g  362 (444)
                      .+.+.+.|+||.|++|++.|.+++++|......+..
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~   37 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIER   37 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccC
Confidence            477889999999999999999999999988887653

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=95.98  E-value=0.0088  Score=45.50  Aligned_cols=44  Identities=11%  Similarity=0.255  Sum_probs=35.1

Q ss_pred             EEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEE
Q 013389          328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYV  371 (444)
Q Consensus       328 lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV  371 (444)
                      +-+.+.||||+|.+|+.+|.+.|+||......+.++.+.-.|-+
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~   45 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI   45 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence            45689999999999999999999999888776655555444444

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>PRK08577 hypothetical protein; Provisional

Probab=95.97  E-value=0.067  Score=47.04  Aligned_cols=43  Identities=21%  Similarity=0.283  Sum_probs=37.8

Q ss_pred             CCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC
Q 013389          111 NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN  153 (444)
Q Consensus       111 ~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~  153 (444)
                      .+....+.|.|.+.|+||+|++|+.+|+++++||.+....+..
T Consensus        51 ~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~   93 (136)
T PRK08577         51 LPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELK   93 (136)
T ss_pred             CCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEec
Confidence            3455689999999999999999999999999999998877743

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=95.96  E-value=0.053  Score=40.78  Aligned_cols=57  Identities=26%  Similarity=0.298  Sum_probs=40.7

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEeCCCCCCCchHHHHHHH
Q 013389           38 VKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTDLNGNKLTDESVISYIE   99 (444)
Q Consensus        38 V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t--~~g~~~dvF~V~d~~g~~~~~~~~~~~i~   99 (444)
                      +.+...|+||.+++++++|+++|++|.......  .++...-.+.+.+.     ...++++.|+
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~-----~~~~~i~~l~   60 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP-----IDEEVIEEIK   60 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC-----CCHHHHHHHH
Confidence            577899999999999999999999999888765  24554434444332     2244555555

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=95.92  E-value=0.072  Score=38.94  Aligned_cols=45  Identities=20%  Similarity=0.414  Sum_probs=35.2

Q ss_pred             EEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC-CeEEEEEEEE
Q 013389          119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVK  163 (444)
Q Consensus       119 i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~-~~~~dvf~V~  163 (444)
                      |.+.+.|+||.+++++.+|++++++|.+..+...+ +.....|.+.
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~   46 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLE   46 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEE
Confidence            46789999999999999999999999999887655 3333334443

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=95.87  E-value=0.043  Score=41.47  Aligned_cols=45  Identities=18%  Similarity=0.368  Sum_probs=35.7

Q ss_pred             EEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC-CeEEEEEEE
Q 013389          118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYV  162 (444)
Q Consensus       118 ~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~-~~~~dvf~V  162 (444)
                      ++.+.++|+||.|++++..|+++++||.+....+.+ +...-.|.+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~   47 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMEL   47 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEE
Confidence            578899999999999999999999999988876643 343333333

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=95.84  E-value=0.052  Score=44.39  Aligned_cols=51  Identities=25%  Similarity=0.440  Sum_probs=41.5

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC-ceEEEEEEEEcCCCC
Q 013389          326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER-DEALNIFYVTDEMGN  377 (444)
Q Consensus       326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g-~~a~d~FyV~d~~g~  377 (444)
                      +.|-+...|+||-|+++-..|+++|+|+.+.+..-.. ..-.=.||| |.+|.
T Consensus        15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfV-Dieg~   66 (90)
T cd04931          15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFI-NLDKK   66 (90)
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEEcC
Confidence            5566777999999999999999999999999997654 345567777 56675

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=95.84  E-value=0.074  Score=38.88  Aligned_cols=61  Identities=25%  Similarity=0.338  Sum_probs=43.8

Q ss_pred             EEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCce-EEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013389          328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDE-ALNIFYVTDEMGNPADPKIIEAVRQKIGL  393 (444)
Q Consensus       328 lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~-a~d~FyV~d~~g~~v~~~~~~~lr~~l~~  393 (444)
                      |.+.+.|+||++.+|+..|.+++++|....+...++. +.-.|.+.-.     +...++.+.++|..
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~   62 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR-----DLEHLARIMRKLRQ   62 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC-----CHHHHHHHHHHHhC
Confidence            4678999999999999999999999999999876633 3223333212     23456777777665

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=95.83  E-value=0.04  Score=42.18  Aligned_cols=46  Identities=17%  Similarity=0.255  Sum_probs=37.6

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEe
Q 013389           38 VKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTD   83 (444)
Q Consensus        38 V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t--~~g~~~dvF~V~d   83 (444)
                      +.+..+|+||.+++++++|+++|+||...+.+.  .++...-+|.+..
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~   49 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE   49 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence            467899999999999999999999999888754  4566665666654

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=95.82  E-value=0.052  Score=41.95  Aligned_cols=64  Identities=14%  Similarity=0.204  Sum_probs=42.6

Q ss_pred             EEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC-ceEEEEEEEEcCCCCCCChHHHHHHHHHHhhc
Q 013389          328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER-DEALNIFYVTDEMGNPADPKIIEAVRQKIGLS  394 (444)
Q Consensus       328 lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g-~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~  394 (444)
                      +.+..+|+||-|++++..|+++|.||.+....... +.....-+|+- .+..  +..++.|.++|.+.
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v-~~e~--~~~~~~i~~~L~~~   66 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRV-TPMD--RSKENELIEELKAK   66 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEE-EEec--chHHHHHHHHHhCc
Confidence            67889999999999999999999999988766441 22222233321 1112  12367777777654

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=95.80  E-value=0.024  Score=43.14  Aligned_cols=60  Identities=22%  Similarity=0.432  Sum_probs=40.7

Q ss_pred             CCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccc
Q 013389          334 DRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKV  398 (444)
Q Consensus       334 DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~  398 (444)
                      |+||.|.+|+.+|+..|+||.+..+....+...-.+.++ ..|.   +..++.|.++|.+ +.+|
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~-v~~~---~~~i~~l~~Ql~K-lidV   60 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIV-VSGD---DREIEQLVKQLEK-LIDV   60 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEE-EES----CCHHHHHHHHHHC-STTE
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEE-EeeC---chhHHHHHHHHhc-cCCe
Confidence            789999999999999999999999987443333333332 1122   2467888888887 3344

>PRK08577 hypothetical protein; Provisional

Probab=95.75  E-value=0.15  Score=44.86  Aligned_cols=76  Identities=9%  Similarity=0.116  Sum_probs=51.0

Q ss_pred             EEEEEec--CCCCeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecC--CEEEEEEEEEeCCCCCCCCHHHHHHHH
Q 013389          236 VVTVQNW--ADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAG--ERAYLEFYIRHIDGTPISSEPERQRVI  311 (444)
Q Consensus       236 ~V~v~~~--~~~~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g--~~a~d~F~V~~~~g~~l~~~~~~~~l~  311 (444)
                      .+.+.+-  ..+....+.|.+.|+||+|++++.+|+++++||.+....+..  +.+.-.|.+.-. +.    +...+.+.
T Consensus        43 ~~~~~~~~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~-~~----~~~l~~l~  117 (136)
T PRK08577         43 EIHLEPIALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLS-KS----DIDLEELE  117 (136)
T ss_pred             EEEEEEcCCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeC-Cc----hhhHHHHH
Confidence            3444443  334578899999999999999999999999999988876643  444444444322 11    12455666


Q ss_pred             HHHHH
Q 013389          312 QCLEA  316 (444)
Q Consensus       312 ~~L~~  316 (444)
                      +.|.+
T Consensus       118 ~~L~~  122 (136)
T PRK08577        118 EELKK  122 (136)
T ss_pred             HHHHc
Confidence            66543

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=95.75  E-value=0.12  Score=40.89  Aligned_cols=48  Identities=17%  Similarity=0.278  Sum_probs=39.0

Q ss_pred             eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee-CCeEEEEEEEEc
Q 013389          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKD  164 (444)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~-~~~~~dvf~V~d  164 (444)
                      +.+.+..+|+||.|+++..+|+++|+||.+...... ++...-.|+|.-
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~   50 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF   50 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE
Confidence            457778899999999999999999999998876654 334556788865

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=95.72  E-value=0.013  Score=44.59  Aligned_cols=46  Identities=17%  Similarity=0.255  Sum_probs=37.1

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEe
Q 013389           38 VKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTD   83 (444)
Q Consensus        38 V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d   83 (444)
                      +.+...|+||++++++.+|++.|.||...+..+.+|.+.-.|.+..
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~   47 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDS   47 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCC
Confidence            5678999999999999999999999988776665576665555443

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=95.70  E-value=0.041  Score=41.87  Aligned_cols=56  Identities=16%  Similarity=0.256  Sum_probs=39.3

Q ss_pred             CCcchHHHHHHHHHHCCCeEEEEEEEee--CCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHh
Q 013389          125 DRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL  188 (444)
Q Consensus       125 DrpGLl~~i~~vL~~~~~~I~~A~i~T~--~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL  188 (444)
                      |+||.|.+|+++|...|+||.+..+...  ++...-.+.+...        +...+.|.++|.+..
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~--------~~~i~~l~~Ql~Kli   58 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGD--------DREIEQLVKQLEKLI   58 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES---------CCHHHHHHHHHHCST
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeC--------chhHHHHHHHHhccC
Confidence            7899999999999999999999999873  3444444544431        234566777777643

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=95.70  E-value=0.065  Score=37.15  Aligned_cols=35  Identities=40%  Similarity=0.539  Sum_probs=31.6

Q ss_pred             EEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC
Q 013389          328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER  362 (444)
Q Consensus       328 lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g  362 (444)
                      +.+.+.|++|++++|+.+|.+.|++|.........
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG   35 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence            46789999999999999999999999999987654

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>PRK07334 threonine dehydratase; Provisional

Probab=95.60  E-value=0.19  Score=52.34  Aligned_cols=64  Identities=20%  Similarity=0.302  Sum_probs=48.8

Q ss_pred             ceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee-----CCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389          116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-----NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (444)
Q Consensus       116 ~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~-----~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~  186 (444)
                      .+.|.|.+.||||+|++|+.+|++.++||.+....+.     ++.+.-.|.+.-       .+.+.++.|.+.|++
T Consensus       326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V-------~d~~~L~~vi~~Lr~  394 (403)
T PRK07334        326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET-------RDAAHLQEVIAALRA  394 (403)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999988764     344333333332       145677777777775

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=95.58  E-value=0.09  Score=40.22  Aligned_cols=35  Identities=31%  Similarity=0.595  Sum_probs=31.3

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEee
Q 013389          325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVS  359 (444)
Q Consensus       325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~  359 (444)
                      +..+.+..+|+||.|.+++++|.++|+||......
T Consensus         1 g~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~   35 (72)
T cd04883           1 SSQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVY   35 (72)
T ss_pred             CcEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEe
Confidence            35788999999999999999999999999988654

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=95.45  E-value=0.13  Score=39.38  Aligned_cols=47  Identities=19%  Similarity=0.273  Sum_probs=38.1

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEE
Q 013389           36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVT   82 (444)
Q Consensus        36 t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t--~~g~~~dvF~V~   82 (444)
                      +.+.+..+|+||.|.+++++|+++|+||.+.+..-  .++...-+|.+.
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~   50 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ   50 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence            46889999999999999999999999999887643  345555556654

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK04435 hypothetical protein; Provisional

Probab=95.36  E-value=0.15  Score=45.60  Aligned_cols=68  Identities=26%  Similarity=0.344  Sum_probs=48.6

Q ss_pred             CCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee-CCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389          113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (444)
Q Consensus       113 ~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~-~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~  186 (444)
                      ......|.+...|+||+|++|+.+|+++|+||......+. +|.+.-.|-+...  +    ....++.|-+.|++
T Consensus        66 ~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs--~----~~~~L~~Li~~L~~  134 (147)
T PRK04435         66 KGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTS--S----MEGDIDELLEKLRN  134 (147)
T ss_pred             CCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeC--C----hHHHHHHHHHHHHc
Confidence            4567899999999999999999999999999998876554 4544445555442  1    11245666666654

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=95.14  E-value=0.17  Score=34.93  Aligned_cols=35  Identities=34%  Similarity=0.556  Sum_probs=31.2

Q ss_pred             EEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC
Q 013389          119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN  153 (444)
Q Consensus       119 i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~  153 (444)
                      |.+.++|+||++++++.+|++++++|.........
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG   35 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence            46789999999999999999999999999886643

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>PRK06635 aspartate kinase; Reviewed

Probab=94.97  E-value=0.42  Score=49.67  Aligned_cols=105  Identities=15%  Similarity=0.167  Sum_probs=66.6

Q ss_pred             EEEEE-eCCCccHHHHHHHHHHhCCceEEEEEEEecC-CeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCCC-CCC
Q 013389           37 LVKVD-SARRHGILLEAVQVLTDLNLLIKKAYISSDG-RFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRS-NSF  113 (444)
Q Consensus        37 ~V~v~-~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~-g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~~-~~~  113 (444)
                      .|++. -.+++|.++++.++|++.|+||.-...+... |..--.|.|.+.+.     +...+.|++ +........ ...
T Consensus       264 ~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~~-----~~a~~~L~~-~~~~~~~~~i~~~  337 (404)
T PRK06635        264 KVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDDL-----EKALELLEE-VKDEIGAESVTYD  337 (404)
T ss_pred             EEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHHH-----HHHHHHHHH-HHHHcCcceEEEc
Confidence            34433 4578999999999999999999976554323 23333455543211     223333443 111100000 123


Q ss_pred             CCceEEEEEE---cCCcchHHHHHHHHHHCCCeEEEE
Q 013389          114 NGLTALELTG---TDRVGLLSEVFAVLADLQCSVVEA  147 (444)
Q Consensus       114 ~~~t~i~v~~---~DrpGLl~~i~~vL~~~~~~I~~A  147 (444)
                      .+...+.|.|   ++.||.++++..+|++.|+||...
T Consensus       338 ~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i  374 (404)
T PRK06635        338 DDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMI  374 (404)
T ss_pred             CCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEE
Confidence            4566788877   689999999999999999999864

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=94.94  E-value=0.057  Score=42.19  Aligned_cols=71  Identities=18%  Similarity=0.236  Sum_probs=49.2

Q ss_pred             EEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee--CCeEEEEE-EEEcCCCCCCCCChHHHHHHHHHHHHHhcC
Q 013389          119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLI-YVKDCNSGSPIEDSQQIDRIEARLRNVLKG  190 (444)
Q Consensus       119 i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~--~~~~~dvf-~V~d~~~g~~i~~~~r~~~i~~~L~~vL~~  190 (444)
                      |+++|+-||-.|+++|-+|..+++-|.+|+|--+  +++---++ +..++ .++.+..+.....|...+.+.|-|
T Consensus         3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e-~~~~~~~~~~r~~i~drv~~~lmg   76 (77)
T cd04898           3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLE-HDRLKLGGRQRSKVVDRVTKTLMG   76 (77)
T ss_pred             ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecC-CCccccchHHHHHHHHHHHHHHhc
Confidence            7889999999999999999999999999999764  34443443 23332 233343344456677666666543

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=94.92  E-value=0.095  Score=41.20  Aligned_cols=50  Identities=22%  Similarity=0.322  Sum_probs=40.1

Q ss_pred             EEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC-ceEEEEEEEEcCCCCC
Q 013389          328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER-DEALNIFYVTDEMGNP  378 (444)
Q Consensus       328 lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g-~~a~d~FyV~d~~g~~  378 (444)
                      +-+...|+||-|+++-..|.++|+|+.+.+..... ....=.||| |.+|..
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~i-d~e~~~   53 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFV-DCECDQ   53 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEEcCH
Confidence            44556899999999999999999999999997654 446677887 566654

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK04435 hypothetical protein; Provisional

Probab=94.90  E-value=0.28  Score=43.80  Aligned_cols=54  Identities=13%  Similarity=-0.021  Sum_probs=43.9

Q ss_pred             cCCCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEe
Q 013389           30 AVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTD   83 (444)
Q Consensus        30 ~~~~~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t-~~g~~~dvF~V~d   83 (444)
                      ...+..+.+.+...|+||+|+++.++|+++|+||....... .+|.+--.|.+..
T Consensus        64 ~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVev  118 (147)
T PRK04435         64 MVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDT  118 (147)
T ss_pred             cCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEe
Confidence            34567789999999999999999999999999999988765 4566555566654

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=94.83  E-value=0.68  Score=48.06  Aligned_cols=101  Identities=10%  Similarity=0.195  Sum_probs=66.7

Q ss_pred             CCeEEEEEE---ccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc-
Q 013389          245 RSYSVVNVQ---CKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR-  320 (444)
Q Consensus       245 ~~~tvv~V~---~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r-  320 (444)
                      .+...|+|.   ..++||+++++..+|.+.+++|..-...  .....-.|.|...         ..+++.+.|.+.+.. 
T Consensus       258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~--~s~~~Is~~V~~~---------d~~~a~~~L~~~~~~~  326 (401)
T TIGR00656       258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQT--PSETSISLTVDET---------DADEAVRALKDQSGAA  326 (401)
T ss_pred             CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcC--CCCceEEEEEeHH---------HHHHHHHHHHHHHHhc
Confidence            456778888   5788999999999999999999754221  1112233556321         233444444443211 


Q ss_pred             C------CCCceEEEEEec---CCCchHHHHHHHHHHCCceEEEE
Q 013389          321 R------ASEGVRLELCME---DRQGLLADVTRTFRENGLNVTRA  356 (444)
Q Consensus       321 r------~~~~~~lev~~~---DRpGLL~~Itr~l~e~gl~I~~A  356 (444)
                      .      ...-..|.|.+.   ++||+++++.++|.+.|+||...
T Consensus       327 ~~~~i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i  371 (401)
T TIGR00656       327 GLDRVEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMI  371 (401)
T ss_pred             CCceEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEE
Confidence            0      122345667764   78999999999999999999853

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=94.54  E-value=0.16  Score=43.49  Aligned_cols=53  Identities=13%  Similarity=0.100  Sum_probs=42.5

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCce-EEEEEEEEcCCCCC
Q 013389          325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDE-ALNIFYVTDEMGNP  378 (444)
Q Consensus       325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~-a~d~FyV~d~~g~~  378 (444)
                      .+.+-+...|+||-|++|-..|+++|||+++.+....... -.=.||| |..|..
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfI-dieg~~   94 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLV-RCEVHR   94 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEE-EEEeCH
Confidence            3567777799999999999999999999999999876554 4456666 666654

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=94.52  E-value=0.62  Score=48.34  Aligned_cols=106  Identities=15%  Similarity=0.235  Sum_probs=68.2

Q ss_pred             CCeEEEEEE---eCCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCC
Q 013389           33 PTATLVKVD---SARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGR  109 (444)
Q Consensus        33 ~~~t~V~v~---~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~  109 (444)
                      .+...|+|.   -.+++|+++++..+|.+.+++|.-.........  ..|.|...+.     ++..+.|++.+.... ..
T Consensus       258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~~~--Is~~V~~~d~-----~~a~~~L~~~~~~~~-~~  329 (401)
T TIGR00656       258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSETS--ISLTVDETDA-----DEAVRALKDQSGAAG-LD  329 (401)
T ss_pred             CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCCce--EEEEEeHHHH-----HHHHHHHHHHHHhcC-Cc
Confidence            345667777   467899999999999999999975443211111  1355532111     233444444331110 00


Q ss_pred             C-CCCCCceEEEEEEc---CCcchHHHHHHHHHHCCCeEEE
Q 013389          110 S-NSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVE  146 (444)
Q Consensus       110 ~-~~~~~~t~i~v~~~---DrpGLl~~i~~vL~~~~~~I~~  146 (444)
                      + ....+...|.|.|.   ++||+++++..+|++.|+||..
T Consensus       330 ~i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~  370 (401)
T TIGR00656       330 RVEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM  370 (401)
T ss_pred             eEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence            1 12345677888885   7899999999999999999984

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PRK11899 prephenate dehydratase; Provisional

Probab=94.41  E-value=0.16  Score=50.25  Aligned_cols=73  Identities=19%  Similarity=0.276  Sum_probs=51.2

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecC-CceEEEEEEEEcCCCCCCChHHHHHHHHHHhhcccccc
Q 013389          325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTE-RDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVK  399 (444)
Q Consensus       325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~-g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~~  399 (444)
                      .+.+-+...|+||.|+++-..|+++|||+++.+..-. +..-.=+||| |..|..-++. ++..-++|......+|
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~i-d~eg~~~d~~-v~~aL~~l~~~~~~~k  267 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYA-DIEGHPEDRN-VALALEELRFFSEEVR  267 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEE-EEECCCCCHH-HHHHHHHHHHhcCcEE
Confidence            4556666789999999999999999999999999755 4556778888 6778654433 3333333333333444

>PRK07334 threonine dehydratase; Provisional

Probab=94.38  E-value=0.24  Score=51.53  Aligned_cols=64  Identities=22%  Similarity=0.248  Sum_probs=49.1

Q ss_pred             eEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec-----CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 013389          247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA-----GERAYLEFYIRHIDGTPISSEPERQRVIQCLEA  316 (444)
Q Consensus       247 ~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~-----g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~  316 (444)
                      .+.|.|.+.||||+|.+|+.+|++.++||.+....+.     ++.+.-.|.|.-.      +.+++++|.+.|++
T Consensus       326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~------d~~~L~~vi~~Lr~  394 (403)
T PRK07334        326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETR------DAAHLQEVIAALRA  394 (403)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeC------CHHHHHHHHHHHHH
Confidence            3689999999999999999999999999999988764     3455444544322      23477788777765

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=94.38  E-value=0.055  Score=42.25  Aligned_cols=44  Identities=23%  Similarity=0.421  Sum_probs=37.3

Q ss_pred             EEEEecCCCchHHHHHHHHHHCCceEEEEEeec--CCceEEEEEEE
Q 013389          328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVST--ERDEALNIFYV  371 (444)
Q Consensus       328 lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T--~g~~a~d~FyV  371 (444)
                      ||+++.-||-.+||+|-+|..+|+.|.+|+|.-  .+++..-+|.+
T Consensus         3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~   48 (77)
T cd04898           3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRV   48 (77)
T ss_pred             ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEE
Confidence            899999999999999999999999999999963  35565555444

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK09181 aspartate kinase; Validated

Probab=94.23  E-value=3.1  Score=44.38  Aligned_cols=104  Identities=17%  Similarity=0.157  Sum_probs=71.2

Q ss_pred             CCeEEEEEEcc---CCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc-
Q 013389          245 RSYSVVNVQCK---DRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR-  320 (444)
Q Consensus       245 ~~~tvv~V~~~---DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r-  320 (444)
                      .+.+.|+|.+.   +.||+++++..+|.+++++|.  .+.+..  ..-.|.|...       ....+++.+.|.+.+.. 
T Consensus       327 ~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~--~sis~~v~~~-------~~~~~~~~~~L~~~~~~~  395 (475)
T PRK09181        327 DKVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNA--NTITHYLWGS-------LKTLKRVIAELEKRYPNA  395 (475)
T ss_pred             CCEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecC--cEEEEEEcCC-------hHHHHHHHHHHHHhcCCc
Confidence            36778888654   789999999999999999998  344432  2334666432       11345555566554421 


Q ss_pred             --CCCCceEEEEEecC--CCchHHHHHHHHHHCCceEEEEEee
Q 013389          321 --RASEGVRLELCMED--RQGLLADVTRTFRENGLNVTRAEVS  359 (444)
Q Consensus       321 --r~~~~~~lev~~~D--RpGLL~~Itr~l~e~gl~I~~A~i~  359 (444)
                        ....-..|.|.+..  +||+.+++..+|.+.|+||....-+
T Consensus       396 ~i~~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg  438 (475)
T PRK09181        396 EVTVRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQS  438 (475)
T ss_pred             eEEECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEec
Confidence              12334567777654  8999999999999999999776544

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=93.90  E-value=0.28  Score=54.74  Aligned_cols=65  Identities=18%  Similarity=0.254  Sum_probs=49.9

Q ss_pred             CceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee--CCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (444)
Q Consensus       115 ~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~--~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~  186 (444)
                      -...|.|.+.||+|||++|+.+++..++||.+..+.+.  ++.+...|.|.-       .+.+.+..|-+.|++
T Consensus       665 ~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV-------~~~~~L~~l~~~L~~  731 (743)
T PRK10872        665 YSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI-------YNLQVLGRVLGKLNQ  731 (743)
T ss_pred             eEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE-------CCHHHHHHHHHHHhc
Confidence            34688999999999999999999999999999998775  355544454432       134677777777764

>PRK06291 aspartate kinase; Provisional

Probab=93.73  E-value=1.3  Score=47.04  Aligned_cols=107  Identities=11%  Similarity=0.155  Sum_probs=71.6

Q ss_pred             CCeEEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCC
Q 013389           33 PTATLVKVDSA---RRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGR  109 (444)
Q Consensus        33 ~~~t~V~v~~~---dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~  109 (444)
                      .+...|++.+.   +.+|+++++.++|+++|++|.-....+..-.+  .|.|...+-     +...+.|++.+..... .
T Consensus       319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~sI--sf~V~~~d~-----~~av~~L~~~~~~~~~-~  390 (465)
T PRK06291        319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESNI--SLVVDEADL-----EKALKALRREFGEGLV-R  390 (465)
T ss_pred             CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCceE--EEEEeHHHH-----HHHHHHHHHHHHHhcC-c
Confidence            34567788764   68999999999999999999876554433222  355544211     2344455555543110 0


Q ss_pred             C-CCCCCceEEEEEEc---CCcchHHHHHHHHHHCCCeEEEE
Q 013389          110 S-NSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEA  147 (444)
Q Consensus       110 ~-~~~~~~t~i~v~~~---DrpGLl~~i~~vL~~~~~~I~~A  147 (444)
                      . ....+...|.|.|.   ++||+++++..+|+..|+||..-
T Consensus       391 ~i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~i  432 (465)
T PRK06291        391 DVTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMI  432 (465)
T ss_pred             ceEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEE
Confidence            1 12345677888886   69999999999999999999843

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=93.60  E-value=0.07  Score=42.95  Aligned_cols=60  Identities=35%  Similarity=0.432  Sum_probs=42.2

Q ss_pred             EEEEecC-CCchHHHHHHHHHHCCceEEEEEeec-----CC----ceEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013389          328 LELCMED-RQGLLADVTRTFRENGLNVTRAEVST-----ER----DEALNIFYVTDEMGNPADPKIIEAVRQKIGL  393 (444)
Q Consensus       328 lev~~~D-RpGLL~~Itr~l~e~gl~I~~A~i~T-----~g----~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~  393 (444)
                      +.|.+.| ++|+++.||++|+++|+||.+.+--+     .+    .+..-.|.|+   |.+.+   .+.||++|.+
T Consensus         2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~---~~~~~---~~~lr~~L~~   71 (84)
T cd04871           2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVR---GQPAD---LEALRAALLE   71 (84)
T ss_pred             EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEe---CCCCC---HHHHHHHHHH
Confidence            6788999 99999999999999999997654431     11    2455567675   44433   5566666554

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=93.57  E-value=0.41  Score=53.49  Aligned_cols=64  Identities=23%  Similarity=0.244  Sum_probs=49.8

Q ss_pred             eEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec--CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 013389          247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA--GERAYLEFYIRHIDGTPISSEPERQRVIQCLEA  316 (444)
Q Consensus       247 ~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~--g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~  316 (444)
                      ...|.|.+.||+|||++|+.+++++++||....+.+.  ++.+.-.|.|.=.      +-..+.+|...|..
T Consensus       666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~------~~~~L~~l~~~L~~  731 (743)
T PRK10872        666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIY------NLQVLGRVLGKLNQ  731 (743)
T ss_pred             EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEEC------CHHHHHHHHHHHhc
Confidence            3588899999999999999999999999999999775  4666666665422      23467777777654

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=93.56  E-value=0.28  Score=50.84  Aligned_cols=74  Identities=18%  Similarity=0.260  Sum_probs=52.8

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEee-cCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccccc
Q 013389          325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVS-TERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKE  400 (444)
Q Consensus       325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~-T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~~~  400 (444)
                      .+.+-+...|+||.|+++-..|+.+|||+++.+.. +.+..-.=.||| |..|..-++ .++..-++|......+|-
T Consensus       297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffi-d~eg~~~d~-~~~~aL~~l~~~~~~~kv  371 (386)
T PRK10622        297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYL-DVQANLRSA-EMQKALKELGEITRSLKV  371 (386)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEE-EEeCCCCCH-HHHHHHHHHHHhcCcEEE
Confidence            45566777899999999999999999999999997 556667888888 677865443 333333444443334443

>PRK08210 aspartate kinase I; Reviewed

Probab=93.56  E-value=1  Score=46.90  Aligned_cols=100  Identities=15%  Similarity=0.268  Sum_probs=66.9

Q ss_pred             CCeEEEEEEeCCC-ccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCCCC
Q 013389           33 PTATLVKVDSARR-HGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSN  111 (444)
Q Consensus        33 ~~~t~V~v~~~dr-~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~~~  111 (444)
                      .+...|+|.+.+. +|.++++.+.|++.|+||.-...+...    -.|.+.+.+         .+...+.|..... ...
T Consensus       269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~~----is~~v~~~~---------~~~a~~~l~~~~~-~v~  334 (403)
T PRK08210        269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPTE----VVFTVSDED---------SEKAKEILENLGL-KPS  334 (403)
T ss_pred             CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCce----EEEEEcHHH---------HHHHHHHHHHhCC-cEE
Confidence            3456777777665 999999999999999999887554332    235554311         1222333332210 001


Q ss_pred             CCCCceEEEEEEc---CCcchHHHHHHHHHHCCCeEEE
Q 013389          112 SFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVE  146 (444)
Q Consensus       112 ~~~~~t~i~v~~~---DrpGLl~~i~~vL~~~~~~I~~  146 (444)
                      ...+...|.|.|.   ++||+++++..+|++.|+||..
T Consensus       335 ~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~  372 (403)
T PRK08210        335 VRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ  372 (403)
T ss_pred             EeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence            2345677778875   7899999999999999999974

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=93.46  E-value=0.64  Score=36.03  Aligned_cols=64  Identities=14%  Similarity=0.190  Sum_probs=42.7

Q ss_pred             EEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCC-eEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389          119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNG-RIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (444)
Q Consensus       119 i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~-~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~  186 (444)
                      +.+..+|+||-|+++..+|+.+|+||..-+..-..+ ...-.|||.-.  |..  ++...+.+-+.|.+
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~--~~~--~~~~~~~~l~~l~~   66 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFE--GHI--DDPDVKEALEELKR   66 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEE--CCC--CCHHHHHHHHHHHH
Confidence            345568999999999999999999999886654333 34446666652  321  23444555555554

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=93.32  E-value=0.06  Score=43.36  Aligned_cols=61  Identities=20%  Similarity=0.239  Sum_probs=43.2

Q ss_pred             EEEEEcC-CcchHHHHHHHHHHCCCeEEEEEEEeeC---------CeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHH
Q 013389          119 LELTGTD-RVGLLSEVFAVLADLQCSVVEAKVWTHN---------GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNV  187 (444)
Q Consensus       119 i~v~~~D-rpGLl~~i~~vL~~~~~~I~~A~i~T~~---------~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~v  187 (444)
                      |+|.|+| .+|++++++++|+++|+||...+-.+..         .+....|.|..+    +. +.   +.++++|.+.
T Consensus         2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~----~~-~~---~~lr~~L~~l   72 (84)
T cd04871           2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQ----PA-DL---EALRAALLEL   72 (84)
T ss_pred             EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCC----CC-CH---HHHHHHHHHH
Confidence            7899999 9999999999999999999875554211         244445666643    22 33   5677777753

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=93.30  E-value=0.91  Score=37.09  Aligned_cols=75  Identities=16%  Similarity=0.244  Sum_probs=48.1

Q ss_pred             EecCCCCeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecC-CEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHh
Q 013389          240 QNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAG-ERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAV  318 (444)
Q Consensus       240 ~~~~~~~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al  318 (444)
                      +++...+.+.|.+..+|+||-|+++...|+++|+|+.+-.-.... ..-.-.|||. .+|.  .++ ..+.+.+.|.+.|
T Consensus         7 ~~~~~~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVD-ieg~--~~~-~~~~~l~~L~~~~   82 (90)
T cd04931           7 ENSNKNGVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFIN-LDKK--SAP-ALDPIIKSLRNDI   82 (90)
T ss_pred             cccCCCCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEE-EEcC--CCH-HHHHHHHHHHHHh
Confidence            334444556777777999999999999999999999865443332 2222346664 4454  233 4555556665544

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=93.21  E-value=0.4  Score=45.38  Aligned_cols=60  Identities=22%  Similarity=0.248  Sum_probs=45.9

Q ss_pred             CCceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecC--CceEEEEEEEEcCCCCCCChHHHHH
Q 013389          323 SEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTE--RDEALNIFYVTDEMGNPADPKIIEA  386 (444)
Q Consensus       323 ~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~--g~~a~d~FyV~d~~g~~v~~~~~~~  386 (444)
                      +++..|-+.-.||||.+..|+.+|.++|+||....+...  |+.|.-+.-+    ..+++++.+++
T Consensus       146 ~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v----D~~v~~~vl~~  207 (208)
T TIGR00719       146 GEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI----DKNIDDHIKDA  207 (208)
T ss_pred             CCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe----CCCCCHHHHhh
Confidence            457778888999999999999999999999999999864  4455444433    34666566554

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=93.20  E-value=0.51  Score=36.06  Aligned_cols=60  Identities=18%  Similarity=0.297  Sum_probs=39.0

Q ss_pred             EEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389          120 ELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (444)
Q Consensus       120 ~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~  186 (444)
                      .|.-+||||-|.+++.+++. |.||...+=.-.+.....++....-      .+++..+.+.+.|.+
T Consensus         2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~------~~~~~~~~i~~~L~~   61 (68)
T cd04885           2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQV------PDREDLAELKERLEA   61 (68)
T ss_pred             EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEe------CCHHHHHHHHHHHHH
Confidence            57789999999999999999 9999976543322222233332221      134555667666664

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=93.17  E-value=0.35  Score=47.71  Aligned_cols=73  Identities=19%  Similarity=0.320  Sum_probs=53.2

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC-ceEEEEEEEEcCCCCCCChHHHHHHHHHHhhcccccc
Q 013389          325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER-DEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVK  399 (444)
Q Consensus       325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g-~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~~  399 (444)
                      .+.|-+...|+||-|+++-..|+.+|||+++.+..-.+ ....=.||| |..|..-+ ..++..-++|......+|
T Consensus       194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~i-D~eg~~~~-~~v~~AL~el~~~t~~~k  267 (279)
T COG0077         194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFI-DIEGHIDD-PLVKEALEELKEITEFVK  267 (279)
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEE-EEecCcCc-HhHHHHHHHHHhheeEEE
Confidence            56777888899999999999999999999999997544 556667777 77787754 333333344444343444

>PRK06635 aspartate kinase; Reviewed

Probab=93.13  E-value=1.8  Score=44.94  Aligned_cols=104  Identities=14%  Similarity=0.264  Sum_probs=68.2

Q ss_pred             CCeEEEEEE-ccCCccHHHHHHHHHHhCCeeEEEEEEEecC-CEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH---hc
Q 013389          245 RSYSVVNVQ-CKDRTKLLFDVVCTLTDMEYVVFHATINTAG-ERAYLEFYIRHIDGTPISSEPERQRVIQCLEAA---VG  319 (444)
Q Consensus       245 ~~~tvv~V~-~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~a---l~  319 (444)
                      ++...|++. -.++||+++++..+|.+.|+||..-...... +...-.|.|...         ..++..+.|.+.   +.
T Consensus       260 ~~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~---------~~~~a~~~L~~~~~~~~  330 (404)
T PRK06635        260 KDEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRD---------DLEKALELLEEVKDEIG  330 (404)
T ss_pred             CCeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHH---------HHHHHHHHHHHHHHHcC
Confidence            345555555 4678999999999999999999964333222 234445656421         233344444442   11


Q ss_pred             cC----CCCceEEEEEe---cCCCchHHHHHHHHHHCCceEEEEE
Q 013389          320 RR----ASEGVRLELCM---EDRQGLLADVTRTFRENGLNVTRAE  357 (444)
Q Consensus       320 rr----~~~~~~lev~~---~DRpGLL~~Itr~l~e~gl~I~~A~  357 (444)
                      -+    ......+.|.+   .|+||++++|.++|.++|++|....
T Consensus       331 ~~~i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~  375 (404)
T PRK06635        331 AESVTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS  375 (404)
T ss_pred             cceEEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence            01    11245677765   5899999999999999999998753

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=92.76  E-value=4.3  Score=42.97  Aligned_cols=107  Identities=11%  Similarity=0.121  Sum_probs=66.0

Q ss_pred             CCCeEEEEEEcc---CCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc
Q 013389          244 DRSYSVVNVQCK---DRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR  320 (444)
Q Consensus       244 ~~~~tvv~V~~~---DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r  320 (444)
                      .++.+.|+|.+.   .++|.+++|...|.++|+||..-........  -.|.+...+.     +...+.+.+.....+..
T Consensus       304 ~~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~-----~~a~~~l~~~~~~~~~~  376 (447)
T COG0527         304 DDNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDA-----PRALRALLEEKLELLAE  376 (447)
T ss_pred             CCCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhH-----HHHHHHHHHHHhhhcce
Confidence            356778888754   3569999999999999999976422221222  4466643211     11223333332222210


Q ss_pred             -CCC-CceEEEEEec---CCCchHHHHHHHHHHCCceEEEEE
Q 013389          321 -RAS-EGVRLELCME---DRQGLLADVTRTFRENGLNVTRAE  357 (444)
Q Consensus       321 -r~~-~~~~lev~~~---DRpGLL~~Itr~l~e~gl~I~~A~  357 (444)
                       ... .-..+.+.+.   ..||+.+.+.++|++.++||....
T Consensus       377 v~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is  418 (447)
T COG0527         377 VEVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS  418 (447)
T ss_pred             EEeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE
Confidence             011 1234555544   679999999999999999999887

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=92.69  E-value=0.56  Score=52.32  Aligned_cols=65  Identities=12%  Similarity=0.221  Sum_probs=48.9

Q ss_pred             CceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCC-eEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNG-RIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (444)
Q Consensus       115 ~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~-~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~  186 (444)
                      -.+.|.|.+.||+|+|++|+.+++..++||.++.+.+.++ .+...|.+.-       .+.+.+..|-+.|+.
T Consensus       625 ~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~i~~~Lr~  690 (702)
T PRK11092        625 FIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA-------RDRVHLANIMRKIRV  690 (702)
T ss_pred             eEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHhC
Confidence            3568899999999999999999999999999999877653 4333443332       134667777777764

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=92.49  E-value=0.7  Score=51.56  Aligned_cols=64  Identities=3%  Similarity=0.006  Sum_probs=49.1

Q ss_pred             eEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecC-CEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 013389          247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAG-ERAYLEFYIRHIDGTPISSEPERQRVIQCLEA  316 (444)
Q Consensus       247 ~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~  316 (444)
                      ...|.|.+.||+|+|.+|+.+++.+++||.+....+.. +.+.-.|.|.=.      +-..+++|...|..
T Consensus       626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~------~~~~L~~i~~~Lr~  690 (702)
T PRK11092        626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTAR------DRVHLANIMRKIRV  690 (702)
T ss_pred             EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEEC------CHHHHHHHHHHHhC
Confidence            45788999999999999999999999999999987764 455555555422      23467777777654

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=92.11  E-value=0.91  Score=34.63  Aligned_cols=63  Identities=10%  Similarity=0.172  Sum_probs=45.5

Q ss_pred             EEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhhccc
Q 013389          329 ELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNL  396 (444)
Q Consensus       329 ev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~  396 (444)
                      .|.-+||||=|.++++++.+ |.||....=.-.+.....++..-...    +++.++.+.++|.+.-.
T Consensus         2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~----~~~~~~~i~~~L~~~G~   64 (68)
T cd04885           2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVP----DREDLAELKERLEALGY   64 (68)
T ss_pred             EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeC----CHHHHHHHHHHHHHcCC
Confidence            46779999999999999999 99999887765554445555444332    23677788888776543

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=92.03  E-value=0.43  Score=43.17  Aligned_cols=47  Identities=17%  Similarity=0.354  Sum_probs=38.4

Q ss_pred             EEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEc
Q 013389          118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD  164 (444)
Q Consensus       118 ~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d  164 (444)
                      -+.+.+.++||.|.+++++++++|.||..|+.+..++.-...+|..-
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEi   50 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEI   50 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEe
Confidence            47788999999999999999999999999999986543334455554

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=91.99  E-value=0.91  Score=50.58  Aligned_cols=65  Identities=14%  Similarity=0.226  Sum_probs=49.0

Q ss_pred             CeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecC-CEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 013389          246 SYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAG-ERAYLEFYIRHIDGTPISSEPERQRVIQCLEA  316 (444)
Q Consensus       246 ~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~  316 (444)
                      -.+.|.|.+.||+|+|++|+.+++.++.||.+..+.+.. +.+.-.|.|.-.      +-..+.+|...|..
T Consensus       609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~------~~~~L~~ii~~L~~  674 (683)
T TIGR00691       609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIK------NYKHLLKIMLKIKT  674 (683)
T ss_pred             eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEEC------CHHHHHHHHHHHhC
Confidence            345888999999999999999999999999999998764 555544555322      23467777776643

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=91.96  E-value=0.45  Score=36.20  Aligned_cols=46  Identities=9%  Similarity=0.264  Sum_probs=35.6

Q ss_pred             CCCeEEEEEEcc----CCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEE
Q 013389          244 DRSYSVVNVQCK----DRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIR  294 (444)
Q Consensus       244 ~~~~tvv~V~~~----DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~  294 (444)
                      +.++..|+|.++    |.||++++++..|++.|++|+...  |   +..+.+.|.
T Consensus         3 ~~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV~   52 (65)
T PF13840_consen    3 EEDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILVK   52 (65)
T ss_dssp             ESEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEEE
T ss_pred             cCCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEEe
Confidence            356788999988    899999999999999999998765  3   234446665

>PRK06291 aspartate kinase; Provisional

Probab=91.89  E-value=3.8  Score=43.57  Aligned_cols=104  Identities=9%  Similarity=0.204  Sum_probs=69.8

Q ss_pred             CCeEEEEEEcc---CCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc-
Q 013389          245 RSYSVVNVQCK---DRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR-  320 (444)
Q Consensus       245 ~~~tvv~V~~~---DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r-  320 (444)
                      ++...|+|.+.   +.||+++++..+|.++|++|..-...+..  ..-.|.|...         ..++..+.|.+.+.. 
T Consensus       319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse--~sIsf~V~~~---------d~~~av~~L~~~~~~~  387 (465)
T PRK06291        319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSE--SNISLVVDEA---------DLEKALKALRREFGEG  387 (465)
T ss_pred             CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCC--ceEEEEEeHH---------HHHHHHHHHHHHHHHh
Confidence            45678888865   78999999999999999999875333322  2223555432         223333444443321 


Q ss_pred             C------CCCceEEEEEec---CCCchHHHHHHHHHHCCceEEEEEee
Q 013389          321 R------ASEGVRLELCME---DRQGLLADVTRTFRENGLNVTRAEVS  359 (444)
Q Consensus       321 r------~~~~~~lev~~~---DRpGLL~~Itr~l~e~gl~I~~A~i~  359 (444)
                      .      ..+-..|.|.+.   +++|++.++..+|.+.|++|....-.
T Consensus       388 ~~~~i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqg  435 (465)
T PRK06291        388 LVRDVTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQG  435 (465)
T ss_pred             cCcceEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEec
Confidence            1      122356777775   79999999999999999999855433

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=91.86  E-value=0.35  Score=50.51  Aligned_cols=61  Identities=25%  Similarity=0.412  Sum_probs=49.0

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHH
Q 013389          325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQ  389 (444)
Q Consensus       325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~  389 (444)
                      ...|-+.-.|+||.++.|+.+|.++|+||...++...|+.|.-+|-+   ++ ++.++.+++|++
T Consensus       338 ~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~---D~-~~~~~~~~~i~~  398 (409)
T PRK11790        338 GHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV---DA-DYAEEALDALKA  398 (409)
T ss_pred             CceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe---CC-CCcHHHHHHHHc
Confidence            47888899999999999999999999999999999999777666644   34 445556666663

>PRK08210 aspartate kinase I; Reviewed

Probab=91.79  E-value=3.8  Score=42.64  Aligned_cols=97  Identities=15%  Similarity=0.287  Sum_probs=65.4

Q ss_pred             CCeEEEEEEccCC-ccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc--C
Q 013389          245 RSYSVVNVQCKDR-TKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR--R  321 (444)
Q Consensus       245 ~~~tvv~V~~~DR-pGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r--r  321 (444)
                      ++...|+|.+.+. ||.+++|..+|.+.|+||..-..+.  ..  -.|.+..         +..+++.+.|.+. ..  .
T Consensus       269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~--~~--is~~v~~---------~~~~~a~~~l~~~-~~~v~  334 (403)
T PRK08210        269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP--TE--VVFTVSD---------EDSEKAKEILENL-GLKPS  334 (403)
T ss_pred             CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC--ce--EEEEEcH---------HHHHHHHHHHHHh-CCcEE
Confidence            4566777776665 9999999999999999998764332  21  2355532         1234444444431 11  0


Q ss_pred             -CCCceEEEEEec---CCCchHHHHHHHHHHCCceEEE
Q 013389          322 -ASEGVRLELCME---DRQGLLADVTRTFRENGLNVTR  355 (444)
Q Consensus       322 -~~~~~~lev~~~---DRpGLL~~Itr~l~e~gl~I~~  355 (444)
                       ...-..|.|.+.   ++||+++++.++|.+.|++|..
T Consensus       335 ~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~  372 (403)
T PRK08210        335 VRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ  372 (403)
T ss_pred             EeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence             122355667665   7999999999999999999974

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=91.78  E-value=0.82  Score=50.93  Aligned_cols=65  Identities=15%  Similarity=0.253  Sum_probs=48.7

Q ss_pred             CceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC-CeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (444)
Q Consensus       115 ~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~-~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~  186 (444)
                      -.+.|.|.+.||+|+|++|+.+++..++||.+..+.+.. +.+...|.|.-       .+.+.+..|-..|+.
T Consensus       609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~ii~~L~~  674 (683)
T TIGR00691       609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI-------KNYKHLLKIMLKIKT  674 (683)
T ss_pred             eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHhC
Confidence            356899999999999999999999999999999987763 44433333332       134667777777764

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>PRK09034 aspartate kinase; Reviewed

Probab=91.77  E-value=5.7  Score=42.11  Aligned_cols=108  Identities=14%  Similarity=0.109  Sum_probs=66.8

Q ss_pred             CeEEEEEEe---CCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCCC
Q 013389           34 TATLVKVDS---ARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRS  110 (444)
Q Consensus        34 ~~t~V~v~~---~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~~  110 (444)
                      +.+.|++.+   .+++|+++++.++|+++|++|.-.  ++ +... -.|.|.+.+-    +...+..+.+.|........
T Consensus       307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i--~s-s~~s-is~~v~~~~~----~~a~~~~l~~el~~~~~~~~  378 (454)
T PRK09034        307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM--PS-GIDD-LSIIIRERQL----TPKKEDEILAEIKQELNPDE  378 (454)
T ss_pred             CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE--cC-CCcE-EEEEEeHHHh----hHHHHHHHHHHHHHhhCCce
Confidence            345667765   567999999999999999998875  22 2211 2355654321    01011222222322110001


Q ss_pred             -CCCCCceEEEEEEc---CCcchHHHHHHHHHHCCCeEEEEEE
Q 013389          111 -NSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAKV  149 (444)
Q Consensus       111 -~~~~~~t~i~v~~~---DrpGLl~~i~~vL~~~~~~I~~A~i  149 (444)
                       ....+...|.+.|.   +.||+++++..+|+.+|+||.....
T Consensus       379 I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq  421 (454)
T PRK09034        379 LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQ  421 (454)
T ss_pred             EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence             12345677888764   7899999999999999999986543

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=91.34  E-value=0.73  Score=41.70  Aligned_cols=46  Identities=13%  Similarity=0.119  Sum_probs=37.4

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEE
Q 013389           37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVT   82 (444)
Q Consensus        37 ~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t--~~g~~~dvF~V~   82 (444)
                      -+.+...|+||.|.++++++++.|.||.-++.+.  +|..+..-|.+-
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiE   51 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIE   51 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEee
Confidence            3678899999999999999999999999999975  443665445443

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=91.09  E-value=0.86  Score=50.41  Aligned_cols=67  Identities=24%  Similarity=0.416  Sum_probs=49.6

Q ss_pred             CCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389          114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (444)
Q Consensus       114 ~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~  186 (444)
                      .-.+.|.|.+.||+|||++|+.+|+..++||.+....+.+++.+.+.....      +.+...+..|-.+|.+
T Consensus       625 ~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~------v~n~~~L~~i~~~l~~  691 (701)
T COG0317         625 VYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIE------VKNLNHLGRVLARLKQ  691 (701)
T ss_pred             ceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEE------ECcHHHHHHHHHHHhc
Confidence            456889999999999999999999999999999888886555555432222      1234566666666653

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=90.81  E-value=1.1  Score=42.50  Aligned_cols=54  Identities=15%  Similarity=0.148  Sum_probs=43.3

Q ss_pred             CCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee--CCeEEEEEEEEc
Q 013389          111 NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKD  164 (444)
Q Consensus       111 ~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~--~~~~~dvf~V~d  164 (444)
                      +...+...+.+.-.|+||.+..|+.+|.++++||...++...  ++.+..++.|..
T Consensus       143 d~~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~  198 (208)
T TIGR00719       143 EFRGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDK  198 (208)
T ss_pred             EecCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCC
Confidence            334456778888899999999999999999999999999874  466666665543

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>PRK09034 aspartate kinase; Reviewed

Probab=90.78  E-value=5.7  Score=42.11  Aligned_cols=108  Identities=12%  Similarity=0.194  Sum_probs=71.2

Q ss_pred             CCeEEEEEEc---cCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccC
Q 013389          245 RSYSVVNVQC---KDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRR  321 (444)
Q Consensus       245 ~~~tvv~V~~---~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr  321 (444)
                      ++.+.|++.+   .++||+++++..+|.++|++|..-  .  .+...-.|.|...+   +. ......+.+.|...+...
T Consensus       306 ~~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i--~--ss~~sis~~v~~~~---~~-~a~~~~l~~el~~~~~~~  377 (454)
T PRK09034        306 KGFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM--P--SGIDDLSIIIRERQ---LT-PKKEDEILAEIKQELNPD  377 (454)
T ss_pred             CCEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE--c--CCCcEEEEEEeHHH---hh-HHHHHHHHHHHHHhhCCc
Confidence            4567788875   678999999999999999999874  2  22233457776432   11 101134444444333110


Q ss_pred             ----CCCceEEEEEec---CCCchHHHHHHHHHHCCceEEEEEeec
Q 013389          322 ----ASEGVRLELCME---DRQGLLADVTRTFRENGLNVTRAEVST  360 (444)
Q Consensus       322 ----~~~~~~lev~~~---DRpGLL~~Itr~l~e~gl~I~~A~i~T  360 (444)
                          ...-..|.+.+.   ++||+++++..+|.++|++|....-.+
T Consensus       378 ~I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~  423 (454)
T PRK09034        378 ELEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS  423 (454)
T ss_pred             eEEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence                122456777553   789999999999999999998876544

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=90.74  E-value=1.1  Score=34.11  Aligned_cols=46  Identities=22%  Similarity=0.416  Sum_probs=35.6

Q ss_pred             CCceEEEEEEc----CCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEc
Q 013389          114 NGLTALELTGT----DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD  164 (444)
Q Consensus       114 ~~~t~i~v~~~----DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d  164 (444)
                      .+...|.|.|+    |.||++++++..|++.|+||....  |   ...+.+.|..
T Consensus         4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV~~   53 (65)
T PF13840_consen    4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILVKE   53 (65)
T ss_dssp             SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEEEG
T ss_pred             CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEEeH
Confidence            34567888888    799999999999999999998666  3   4456666665

>PRK06382 threonine dehydratase; Provisional

Probab=90.68  E-value=3.4  Score=43.11  Aligned_cols=65  Identities=25%  Similarity=0.227  Sum_probs=46.2

Q ss_pred             CceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEe-----eCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-----HNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (444)
Q Consensus       115 ~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T-----~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~  186 (444)
                      ..+.+.|.-+|+||-|++++.+|+++|+||.+.....     ..+...-+|.|...       +++..+.|.+.|++
T Consensus       329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-------~~~~~~~v~~~L~~  398 (406)
T PRK06382        329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-------GQDHLDRILNALRE  398 (406)
T ss_pred             CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence            4689999999999999999999999999998876541     13445445555442       23344456666654

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=90.47  E-value=4.5  Score=46.14  Aligned_cols=106  Identities=10%  Similarity=0.143  Sum_probs=69.4

Q ss_pred             CCeEEEEEEcc---CCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc-
Q 013389          245 RSYSVVNVQCK---DRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR-  320 (444)
Q Consensus       245 ~~~tvv~V~~~---DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r-  320 (444)
                      ++.+.|+|.+.   ++||+++++..+|.+.|++|......+  ....-.|.|...+.     +...+.|.+.+...+.. 
T Consensus       313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss--Se~sIsf~V~~~d~-----~~av~~L~~~f~~el~~~  385 (819)
T PRK09436        313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS--SEYSISFCVPQSDA-----AKAKRALEEEFALELKEG  385 (819)
T ss_pred             CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC--CCceEEEEEeHHHH-----HHHHHHHHHHHHHHhccC
Confidence            56788999865   689999999999999999997654333  22223466653211     11223333333222221 


Q ss_pred             CC------CCceEEEEEec---CCCchHHHHHHHHHHCCceEEEEE
Q 013389          321 RA------SEGVRLELCME---DRQGLLADVTRTFRENGLNVTRAE  357 (444)
Q Consensus       321 r~------~~~~~lev~~~---DRpGLL~~Itr~l~e~gl~I~~A~  357 (444)
                      ..      ..-..|.|.+.   ++||+++++..+|.+.|++|....
T Consensus       386 ~~~~i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is  431 (819)
T PRK09436        386 LLEPLEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA  431 (819)
T ss_pred             CcceEEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence            11      22356777776   789999999999999999998664

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=90.25  E-value=4.2  Score=46.39  Aligned_cols=109  Identities=13%  Similarity=0.170  Sum_probs=72.0

Q ss_pred             CCeEEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccC--
Q 013389           33 PTATLVKVDSA---RRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHY--  107 (444)
Q Consensus        33 ~~~t~V~v~~~---dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~--  107 (444)
                      .+.+.|+|.+.   +++|+++++...|+++|++|.-...++.. .- ..|.|...+.     +...+.|++.+.....  
T Consensus       313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe-~s-Isf~V~~~d~-----~~av~~L~~~f~~el~~~  385 (819)
T PRK09436        313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSE-YS-ISFCVPQSDA-----AKAKRALEEEFALELKEG  385 (819)
T ss_pred             CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCC-ce-EEEEEeHHHH-----HHHHHHHHHHHHHHhccC
Confidence            45677888764   67999999999999999999766554322 11 2355554221     2234445554432111  


Q ss_pred             -CCC-CCCCCceEEEEEEc---CCcchHHHHHHHHHHCCCeEEEEE
Q 013389          108 -GRS-NSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAK  148 (444)
Q Consensus       108 -~~~-~~~~~~t~i~v~~~---DrpGLl~~i~~vL~~~~~~I~~A~  148 (444)
                       ... ....+...|.|.|.   ++||+++++..+|++.|+||....
T Consensus       386 ~~~~i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is  431 (819)
T PRK09436        386 LLEPLEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA  431 (819)
T ss_pred             CcceEEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence             011 12345678888886   789999999999999999998543

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=90.10  E-value=1.4  Score=48.88  Aligned_cols=74  Identities=20%  Similarity=0.162  Sum_probs=52.2

Q ss_pred             EEEEecC-CCCeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCC-EEEEEEEEEeCCCCCCCCHHHHHHHHHHH
Q 013389          237 VTVQNWA-DRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGE-RAYLEFYIRHIDGTPISSEPERQRVIQCL  314 (444)
Q Consensus       237 V~v~~~~-~~~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~-~a~d~F~V~~~~g~~l~~~~~~~~l~~~L  314 (444)
                      |.|+... ..-...|.|.+.||+|||.+|+.+|+.++.||......+.++ .+.-.|-+.-.      +-..+.+|...|
T Consensus       616 v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~------n~~~L~~i~~~l  689 (701)
T COG0317         616 VSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVK------NLNHLGRVLARL  689 (701)
T ss_pred             EEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEEC------cHHHHHHHHHHH
Confidence            4555543 345568999999999999999999999999999998887644 44444444322      223566776666


Q ss_pred             HH
Q 013389          315 EA  316 (444)
Q Consensus       315 ~~  316 (444)
                      .+
T Consensus       690 ~~  691 (701)
T COG0317         690 KQ  691 (701)
T ss_pred             hc
Confidence            43

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=90.07  E-value=0.77  Score=44.21  Aligned_cols=66  Identities=14%  Similarity=0.180  Sum_probs=45.3

Q ss_pred             CceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEE--EEEEEcCCCCCCCCChHHHHHHHHHHHHHh
Q 013389          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIAS--LIYVKDCNSGSPIEDSQQIDRIEARLRNVL  188 (444)
Q Consensus       115 ~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~d--vf~V~d~~~g~~i~~~~r~~~i~~~L~~vL  188 (444)
                      ....|.+...|.||.+++|+++|+..|.||.+.-+--.......  ++.+...        +.-+++.+++|++..
T Consensus        76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gt--------d~VveQa~rQiedlV  143 (309)
T KOG2663|consen   76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGT--------DGVVEQARRQIEDLV  143 (309)
T ss_pred             cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEecc--------HHHHHHHHHHHHHhh
Confidence            45678888999999999999999999999999877654333333  4444431        133455555555433

>PRK14630 hypothetical protein; Provisional

Probab=89.82  E-value=2.5  Score=37.60  Aligned_cols=95  Identities=5%  Similarity=-0.006  Sum_probs=66.5

Q ss_pred             CCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q 013389          256 DRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVRLELCMEDR  335 (444)
Q Consensus       256 DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr~~~~~~lev~~~DR  335 (444)
                      |.-.+-..+..++..+|+.+.+......++.-.-..||...+|  ++- +.++.+.+.+...|+...+..|.|||+++.=
T Consensus         6 ~~~~i~~li~~~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~g--V~i-dDC~~vSr~i~~~ld~~i~~~Y~LEVSSPGl   82 (143)
T PRK14630          6 DNSEVYNLIKNVTDRLGIEIIEINTFRNRNEGKIQIVLYKKDS--FGV-DTLCDLHKMILLILEAVLKYNFSLEISTPGI   82 (143)
T ss_pred             cHHHHHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCC--CCH-HHHHHHHHHHHHHhcccCCCCeEEEEeCCCC
Confidence            4455667778889999999999998876653334556665555  333 3799999999888876556789999997733


Q ss_pred             CchHHHHHHHHHHCCceE
Q 013389          336 QGLLADVTRTFRENGLNV  353 (444)
Q Consensus       336 pGLL~~Itr~l~e~gl~I  353 (444)
                      ---|...-++-+-.|=.|
T Consensus        83 dRpL~~~~df~r~~G~~v  100 (143)
T PRK14630         83 NRKIKSDREFKIFEGKKI  100 (143)
T ss_pred             CCcCCCHHHHHHhCCCEE
Confidence            333666666666666443

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=89.75  E-value=0.66  Score=48.50  Aligned_cols=50  Identities=18%  Similarity=0.153  Sum_probs=43.9

Q ss_pred             CCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEE
Q 013389          114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVK  163 (444)
Q Consensus       114 ~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~  163 (444)
                      .....|.+.-.|+||.++.|+.+|+++|+||.+.+.+..++.+..+|-+.
T Consensus       336 ~~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D  385 (409)
T PRK11790        336 PGGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVD  385 (409)
T ss_pred             CCCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeC
Confidence            36688999999999999999999999999999999988887777776553

>PRK06349 homoserine dehydrogenase; Provisional

Probab=89.59  E-value=1.6  Score=45.77  Aligned_cols=65  Identities=26%  Similarity=0.358  Sum_probs=49.2

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013389          325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGL  393 (444)
Q Consensus       325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~  393 (444)
                      .+.|.+...|+||.|++|+.+|.++|+||.+..-....+.....+++++..    +...++++.++|.+
T Consensus       348 ~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~~----~e~~l~~~i~~L~~  412 (426)
T PRK06349        348 KYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHET----SEAALRAALAAIEA  412 (426)
T ss_pred             eEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEeC----CHHHHHHHHHHHhc
Confidence            467888999999999999999999999999887654433556777777532    23556666666665

>PRK14646 hypothetical protein; Provisional

Probab=89.40  E-value=4.2  Score=36.64  Aligned_cols=94  Identities=14%  Similarity=0.114  Sum_probs=68.4

Q ss_pred             cHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc--CCCCceEEEEEecCCC
Q 013389          259 KLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR--RASEGVRLELCMEDRQ  336 (444)
Q Consensus       259 GLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r--r~~~~~~lev~~~DRp  336 (444)
                      .+...+..++..+|+.+.+..+...++...-..||..++|..++-+ .++.+.+.|.+.|+.  ..+..|.|||+++-=-
T Consensus         8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtld-DC~~vSr~is~~LD~~D~i~~~Y~LEVSSPGld   86 (155)
T PRK14646          8 KLEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISLD-DCALFNTPASEEIENSNLLNCSYVLEISSQGVS   86 (155)
T ss_pred             HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccHH-HHHHHHHHHHHHhCcCCCCCCCeEEEEcCCCCC
Confidence            4666778889999999999999987764444566655544445433 799999999998863  3456899999987444


Q ss_pred             chHHHHHHHHHHCCceE
Q 013389          337 GLLADVTRTFRENGLNV  353 (444)
Q Consensus       337 GLL~~Itr~l~e~gl~I  353 (444)
                      --|..--.+-+-.|-.|
T Consensus        87 RpL~~~~df~r~~G~~v  103 (155)
T PRK14646         87 DELTSERDFKTFKGFPV  103 (155)
T ss_pred             CcCCCHHHHHHhCCCEE
Confidence            44777777777777655

>PRK09181 aspartate kinase; Validated

Probab=89.37  E-value=6.1  Score=42.16  Aligned_cols=104  Identities=14%  Similarity=0.153  Sum_probs=66.4

Q ss_pred             CeEEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCCC
Q 013389           34 TATLVKVDSA---RRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRS  110 (444)
Q Consensus        34 ~~t~V~v~~~---dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~~  110 (444)
                      +.+.|+|.+.   +.+|+++++.+.|++.|++|.  .+.+...  -..|.|.+. ..+  -.+.++.|++.+....-   
T Consensus       328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~~--sis~~v~~~-~~~--~~~~~~~L~~~~~~~~i---  397 (475)
T PRK09181        328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNAN--TITHYLWGS-LKT--LKRVIAELEKRYPNAEV---  397 (475)
T ss_pred             CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecCc--EEEEEEcCC-hHH--HHHHHHHHHHhcCCceE---
Confidence            5667777554   689999999999999999997  3333221  123555432 100  01223334333321100   


Q ss_pred             CCCCCceEEEEEEcC--CcchHHHHHHHHHHCCCeEEEEE
Q 013389          111 NSFNGLTALELTGTD--RVGLLSEVFAVLADLQCSVVEAK  148 (444)
Q Consensus       111 ~~~~~~t~i~v~~~D--rpGLl~~i~~vL~~~~~~I~~A~  148 (444)
                      . ..+...|.+.|..  +||+.+++..+|++.|+||..-.
T Consensus       398 ~-~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~  436 (475)
T PRK09181        398 T-VRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALH  436 (475)
T ss_pred             E-ECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEE
Confidence            1 2456788888865  89999999999999999998433

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=89.30  E-value=2.3  Score=33.12  Aligned_cols=47  Identities=11%  Similarity=0.198  Sum_probs=36.0

Q ss_pred             EEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCC-eEEEEEEEEc
Q 013389          118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNG-RIASLIYVKD  164 (444)
Q Consensus       118 ~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~-~~~dvf~V~d  164 (444)
                      .+.+..+|+||-|+++-.+|+.+|+|+..-+..-..+ ...=.|||.=
T Consensus         2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~   49 (74)
T cd04904           2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDC   49 (74)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEE
Confidence            4556668999999999999999999999877665433 3344677765

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>PLN02551 aspartokinase

Probab=89.08  E-value=9.8  Score=41.12  Aligned_cols=109  Identities=17%  Similarity=0.215  Sum_probs=66.5

Q ss_pred             CCeEEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHH-HHHHHHhhhccCC
Q 013389           33 PTATLVKVDSA---RRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVI-SYIEQSLETIHYG  108 (444)
Q Consensus        33 ~~~t~V~v~~~---dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~-~~i~~aL~~~~~~  108 (444)
                      .+.+.|+|.+.   +++|.++++...|+++|++|.-.. ++..   -..|.|...+-.   ..+.+ +.+++.+.....+
T Consensus       364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is-sSe~---sIs~~v~~~~~~---~~~~i~~~l~~l~~el~~~  436 (521)
T PLN02551        364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA-TSEV---SISLTLDPSKLW---SRELIQQELDHLVEELEKI  436 (521)
T ss_pred             CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEe-ccCC---EEEEEEehhHhh---hhhhHHHHHHHHHHHhhcC
Confidence            34567788765   589999999999999999998663 2222   123555443211   11111 1122111111101


Q ss_pred             CC-CCCCCceEEEEEEc--CCcchHHHHHHHHHHCCCeEEEEE
Q 013389          109 RS-NSFNGLTALELTGT--DRVGLLSEVFAVLADLQCSVVEAK  148 (444)
Q Consensus       109 ~~-~~~~~~t~i~v~~~--DrpGLl~~i~~vL~~~~~~I~~A~  148 (444)
                      .. ....+...|.|.|.  ..||+++++..+|+..|+||....
T Consensus       437 ~~V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIs  479 (521)
T PLN02551        437 AVVNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMIS  479 (521)
T ss_pred             CeEEEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEE
Confidence            11 12345667777765  689999999999999999998544

>PRK08818 prephenate dehydrogenase; Provisional

Probab=88.62  E-value=0.91  Score=46.80  Aligned_cols=49  Identities=20%  Similarity=0.341  Sum_probs=38.2

Q ss_pred             ceEEEEEec-CCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcC
Q 013389          325 GVRLELCME-DRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDE  374 (444)
Q Consensus       325 ~~~lev~~~-DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~  374 (444)
                      .+.+-+.-+ |+||.|++|+.+|.++|+||++.++ .....-.-.|||.-.
T Consensus       295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~~  344 (370)
T PRK08818        295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGFE  344 (370)
T ss_pred             ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEEe
Confidence            456667775 9999999999999999999999999 343334444998533

>TIGR00657 asp_kinases aspartate kinase

Probab=88.62  E-value=11  Score=39.74  Aligned_cols=107  Identities=18%  Similarity=0.190  Sum_probs=65.9

Q ss_pred             CeEEEEEEeCCC--ccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCCC-
Q 013389           34 TATLVKVDSARR--HGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRS-  110 (444)
Q Consensus        34 ~~t~V~v~~~dr--~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~~-  110 (444)
                      +...|+|.+.+-  +|+++++.+.|.++|++|.-....+.. .. ..|.|...+.     +...+.|.. +........ 
T Consensus       301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se-~s-Is~~I~~~~~-----~~a~~~L~~-~~~~~~~~~I  372 (441)
T TIGR00657       301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSE-TS-ISFTVDKEDA-----DQAKTLLKS-ELNLSALSSV  372 (441)
T ss_pred             CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCC-ce-EEEEEEHHHH-----HHHHHHHHH-HHHhcCcceE
Confidence            455666665433  699999999999999999876543322 11 2344543211     112222221 111100011 


Q ss_pred             CCCCCceEEEEEEc---CCcchHHHHHHHHHHCCCeEEEEE
Q 013389          111 NSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAK  148 (444)
Q Consensus       111 ~~~~~~t~i~v~~~---DrpGLl~~i~~vL~~~~~~I~~A~  148 (444)
                      ....+...|.+.|.   +.||+++++..+|+..|+||....
T Consensus       373 ~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~  413 (441)
T TIGR00657       373 EVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS  413 (441)
T ss_pred             EEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence            22345678888764   789999999999999999997654

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>PRK14634 hypothetical protein; Provisional

Probab=88.60  E-value=4  Score=36.80  Aligned_cols=95  Identities=17%  Similarity=0.102  Sum_probs=66.9

Q ss_pred             ccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc--CCCCceEEEEEecCC
Q 013389          258 TKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR--RASEGVRLELCMEDR  335 (444)
Q Consensus       258 pGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r--r~~~~~~lev~~~DR  335 (444)
                      +.+-.-+..++..+|+.+.+..+...++...-..||..++|..++-+ .++.+.+.|.+.|+.  ..+..|.|||+++-=
T Consensus         7 ~~i~~l~~~~~~~~G~elvdve~~~~~~~~~lrV~ID~~~g~~v~ld-dC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl   85 (155)
T PRK14634          7 PDLETLASATAADKGFELCGIQVLTHLQPMTLQVQIRRSSGSDVSLD-DCAGFSGPMGEALEASQLLTEAYVLEISSPGI   85 (155)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEEEEeCCCCcEEEEEEECCCCCcccHH-HHHHHHHHHHHHhcccccCCCCeEEEEeCCCC
Confidence            45666677789999999999999887654444566766667445543 799999999988864  235679999998733


Q ss_pred             CchHHHHHHHHHHCCceE
Q 013389          336 QGLLADVTRTFRENGLNV  353 (444)
Q Consensus       336 pGLL~~Itr~l~e~gl~I  353 (444)
                      ---|..--++-+-.|-.|
T Consensus        86 dRpL~~~~~f~r~~G~~V  103 (155)
T PRK14634         86 GDQLSSDRDFQTFRGFPV  103 (155)
T ss_pred             CCcCCCHHHHHHhCCCeE
Confidence            333666666666666443

>PLN02317 arogenate dehydratase

Probab=88.57  E-value=1.9  Score=44.44  Aligned_cols=68  Identities=21%  Similarity=0.277  Sum_probs=48.6

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCce---------------EEEEEEEEcCCCCCCChHHHHHHHHH
Q 013389          326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDE---------------ALNIFYVTDEMGNPADPKIIEAVRQK  390 (444)
Q Consensus       326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~---------------a~d~FyV~d~~g~~v~~~~~~~lr~~  390 (444)
                      +.|-+.-.|+||.|+++-.+|+.+|||+++.+..-...+               -.=.||| |.+|..-+ ..++..-++
T Consensus       284 TSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyV-D~eg~~~d-~~~~~aL~~  361 (382)
T PLN02317        284 TSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYV-DFEASMAD-PRAQNALAH  361 (382)
T ss_pred             EEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEE-EEEcCcCC-HHHHHHHHH
Confidence            567777789999999999999999999999998755433               3457888 66676544 333444445


Q ss_pred             Hhhcc
Q 013389          391 IGLSN  395 (444)
Q Consensus       391 l~~~~  395 (444)
                      |.+..
T Consensus       362 L~~~~  366 (382)
T PLN02317        362 LQEFA  366 (382)
T ss_pred             HHHhc
Confidence            55433

>PRK06382 threonine dehydratase; Provisional

Probab=88.54  E-value=2  Score=44.86  Aligned_cols=82  Identities=18%  Similarity=0.188  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHhccCCCCceEEEEEecCCCchHHHHHHHHHHCCceEEEEEee----cC-CceEEEEEEEEcCCCCCCChH
Q 013389          308 QRVIQCLEAAVGRRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVS----TE-RDEALNIFYVTDEMGNPADPK  382 (444)
Q Consensus       308 ~~l~~~L~~al~rr~~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~----T~-g~~a~d~FyV~d~~g~~v~~~  382 (444)
                      ..+.+.+...+. ...+.+.++|.-+||||-|.+|+++|.++|+||.+....    .. .+.+.=+|.|. ..    ++.
T Consensus       314 ~~~~~~~~~~~~-~~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~ve-t~----~~~  387 (406)
T PRK06382        314 LLMSKIIYKELE-NLGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVN-VR----GQD  387 (406)
T ss_pred             HHHHHHHHHHHH-hcCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEE-eC----CHH
Confidence            345555544442 122357899999999999999999999999999987764    11 22344444442 21    224


Q ss_pred             HHHHHHHHHhhcc
Q 013389          383 IIEAVRQKIGLSN  395 (444)
Q Consensus       383 ~~~~lr~~l~~~~  395 (444)
                      ..++|.+.|.+.-
T Consensus       388 ~~~~v~~~L~~~G  400 (406)
T PRK06382        388 HLDRILNALREMG  400 (406)
T ss_pred             HHHHHHHHHHHCC
Confidence            4557777776643

>PRK14636 hypothetical protein; Provisional

Probab=88.18  E-value=4.6  Score=37.21  Aligned_cols=97  Identities=11%  Similarity=0.054  Sum_probs=67.0

Q ss_pred             CCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc--CCCCceEEEEEec
Q 013389          256 DRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR--RASEGVRLELCME  333 (444)
Q Consensus       256 DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r--r~~~~~~lev~~~  333 (444)
                      |.+.+..-+..++..+|+.+.+..+...++...-..||.++++..++-+ .++++.+.|.+.|..  ..+..|.|||+++
T Consensus         3 ~~~~i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~~~~ggV~lD-DC~~vSr~Is~~LD~~d~i~~~Y~LEVSSP   81 (176)
T PRK14636          3 DIAALTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTRQLVIE-DCAALSRRLSDVFDELDPIEDAYRLEVSSP   81 (176)
T ss_pred             hHHHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECCCCCCcCHH-HHHHHHHHHHHHhccCcCCCCCeEEEEeCC
Confidence            3445666778889999999999999887654444455655543335433 799999999998863  3456899999987


Q ss_pred             CCCchHHHHHHHHHHCCceE
Q 013389          334 DRQGLLADVTRTFRENGLNV  353 (444)
Q Consensus       334 DRpGLL~~Itr~l~e~gl~I  353 (444)
                      -=---|..--.+-+-.|-.|
T Consensus        82 GldRpL~~~~df~r~~G~~V  101 (176)
T PRK14636         82 GIDRPLTRPKDFADWAGHEA  101 (176)
T ss_pred             CCCCCCCCHHHHHHhCCCeE
Confidence            33333655666666666544

>PLN02551 aspartokinase

Probab=87.67  E-value=14  Score=39.93  Aligned_cols=133  Identities=17%  Similarity=0.209  Sum_probs=79.6

Q ss_pred             CCCeEEEEEEcc---CCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHH---HH
Q 013389          244 DRSYSVVNVQCK---DRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLE---AA  317 (444)
Q Consensus       244 ~~~~tvv~V~~~---DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~---~a  317 (444)
                      .++.+.|+|.+.   +.||+++++...|.++|++|..-  .+..  ..-.|.|...+-.      ..+.+++.|.   ..
T Consensus       363 ~~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssSe--~sIs~~v~~~~~~------~~~~i~~~l~~l~~e  432 (521)
T PLN02551        363 KRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSE--VSISLTLDPSKLW------SRELIQQELDHLVEE  432 (521)
T ss_pred             CCCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--eccC--CEEEEEEehhHhh------hhhhHHHHHHHHHHH
Confidence            345678888766   68999999999999999999875  3322  2334666543211      1122222222   12


Q ss_pred             hcc--C---CCCceEEEEEec--CCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHH
Q 013389          318 VGR--R---ASEGVRLELCME--DRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQK  390 (444)
Q Consensus       318 l~r--r---~~~~~~lev~~~--DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~  390 (444)
                      |.+  +   ...-..|.|.+.  .++|+++++..+|.++|+||......+   ...+.-+|.+..  .. .+.+..|.++
T Consensus       433 l~~~~~V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga---SeinIS~vV~~~--d~-~~Av~aLH~~  506 (521)
T PLN02551        433 LEKIAVVNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA---SKVNISLIVNDD--EA-EQCVRALHSA  506 (521)
T ss_pred             hhcCCeEEEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC---CCcEEEEEEeHH--HH-HHHHHHHHHH
Confidence            321  0   122345666654  689999999999999999998766543   334443343321  10 1345566666


Q ss_pred             Hh
Q 013389          391 IG  392 (444)
Q Consensus       391 l~  392 (444)
                      |.
T Consensus       507 Ff  508 (521)
T PLN02551        507 FF  508 (521)
T ss_pred             Hh
Confidence            53

>PRK06545 prephenate dehydrogenase; Validated

Probab=87.62  E-value=1.9  Score=44.21  Aligned_cols=51  Identities=16%  Similarity=0.272  Sum_probs=40.9

Q ss_pred             CCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEE
Q 013389          113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVK  163 (444)
Q Consensus       113 ~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~  163 (444)
                      ....+.|.|.-+|+||-+++|+..|+..|+||.+.+|.-..+...-++.+.
T Consensus       287 ~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~  337 (359)
T PRK06545        287 IPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQIS  337 (359)
T ss_pred             CCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEE
Confidence            346799999999999999999999999999999999965444443444333

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=87.43  E-value=4.3  Score=32.40  Aligned_cols=27  Identities=19%  Similarity=0.319  Sum_probs=22.7

Q ss_pred             EEEEEEcCCcchHHHHHHHHHHCCCeEEE
Q 013389          118 ALELTGTDRVGLLSEVFAVLADLQCSVVE  146 (444)
Q Consensus       118 ~i~v~~~DrpGLl~~i~~vL~~~~~~I~~  146 (444)
                      .+.|.-+|+||-|++++.+|+  +.||..
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~   29 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITE   29 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeE
Confidence            467888999999999999999  566664

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=87.26  E-value=2.2  Score=38.64  Aligned_cols=66  Identities=20%  Similarity=0.299  Sum_probs=46.2

Q ss_pred             eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee-CCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhc
Q 013389          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK  189 (444)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~-~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~  189 (444)
                      ..+.+.-.|.||.|+++++.|+..|.||.+-.+--. +....=.-.|..   |    |+..+++|.++|.+...
T Consensus         5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~---g----~~~~~EQi~kQL~kLid   71 (163)
T COG0440           5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS---G----DEQVLEQIIKQLNKLID   71 (163)
T ss_pred             EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc---C----CcchHHHHHHHHHhhcc
Confidence            467788899999999999999999999999777643 222222223333   1    23456778888777554

>PRK14645 hypothetical protein; Provisional

Probab=87.26  E-value=7  Score=35.22  Aligned_cols=95  Identities=22%  Similarity=0.260  Sum_probs=67.1

Q ss_pred             CccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccC--CCCceEEEEEecC
Q 013389          257 RTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRR--ASEGVRLELCMED  334 (444)
Q Consensus       257 RpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr--~~~~~~lev~~~D  334 (444)
                      ...+-..+..++..+|+.+.+..+...++.-.-..+|...+|..++-+ .++.+.+.|.+.|+..  .+..|.|||+++-
T Consensus         8 ~~~i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v~ld-dC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG   86 (154)
T PRK14645          8 NPDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVE-DLERASRALEAELDRLDPIEGEYRLEVESPG   86 (154)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCcCHH-HHHHHHHHHHHHhcccccCCCceEEEEeCCC
Confidence            344666778889999999999999887653333455654445445543 7999999999988643  3567999999874


Q ss_pred             CCchHHHHHHHHHHCCce
Q 013389          335 RQGLLADVTRTFRENGLN  352 (444)
Q Consensus       335 RpGLL~~Itr~l~e~gl~  352 (444)
                      =---|...-.+-+-.|-.
T Consensus        87 ldRpL~~~~df~r~~G~~  104 (154)
T PRK14645         87 PKRPLFTARHFERFAGLK  104 (154)
T ss_pred             CCCCCCCHHHHHHhCCCE
Confidence            433477777777777744

>TIGR00657 asp_kinases aspartate kinase

Probab=87.12  E-value=12  Score=39.35  Aligned_cols=102  Identities=16%  Similarity=0.209  Sum_probs=65.1

Q ss_pred             CCeEEEEEEccCC--ccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccC-
Q 013389          245 RSYSVVNVQCKDR--TKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRR-  321 (444)
Q Consensus       245 ~~~tvv~V~~~DR--pGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr-  321 (444)
                      ++...|+|.+.+-  ||++.++..+|.++|++|....-.+. + ..-.|.|...         ..++..+.|....... 
T Consensus       300 ~~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~s-e-~sIs~~I~~~---------~~~~a~~~L~~~~~~~~  368 (441)
T TIGR00657       300 RNQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSS-E-TSISFTVDKE---------DADQAKTLLKSELNLSA  368 (441)
T ss_pred             CCEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCC-C-ceEEEEEEHH---------HHHHHHHHHHHHHHhcC
Confidence            3566778776443  79999999999999999987642222 2 2223555432         1222222232211111 


Q ss_pred             ------CCCceEEEEEe---cCCCchHHHHHHHHHHCCceEEEEE
Q 013389          322 ------ASEGVRLELCM---EDRQGLLADVTRTFRENGLNVTRAE  357 (444)
Q Consensus       322 ------~~~~~~lev~~---~DRpGLL~~Itr~l~e~gl~I~~A~  357 (444)
                            ...-..+.|.+   .++||++++|.+.|++.|++|....
T Consensus       369 ~~~I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~  413 (441)
T TIGR00657       369 LSSVEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS  413 (441)
T ss_pred             cceEEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence                  12235677754   3789999999999999999997775

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=87.02  E-value=1.6  Score=42.15  Aligned_cols=70  Identities=17%  Similarity=0.312  Sum_probs=50.4

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEE--EEEEEcCCCCCCChHHHHHHHHHHhhccccccc
Q 013389          324 EGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALN--IFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKE  400 (444)
Q Consensus       324 ~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d--~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~~~  400 (444)
                      +...+.+.-.|-||+|++|+-+|+.+|.||.++-+.-...++--  +-.+.   |.   ++.+++.+++|.+ +++|-+
T Consensus        76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~---Gt---d~VveQa~rQied-lVnV~a  147 (309)
T KOG2663|consen   76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQ---GT---DGVVEQARRQIED-LVNVYA  147 (309)
T ss_pred             cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEe---cc---HHHHHHHHHHHHH-hhhhhe
Confidence            36789999999999999999999999999999988644343332  22232   21   3667778888777 444443

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=86.81  E-value=11  Score=38.83  Aligned_cols=64  Identities=20%  Similarity=0.247  Sum_probs=43.9

Q ss_pred             ceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEE---ee--CCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389          116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVW---TH--NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (444)
Q Consensus       116 ~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~---T~--~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~  186 (444)
                      ...+.|.-+|+||.|++++..++++|.||.+..-.   ..  .+.+.-.+.+...       +++..+.|.+.|++
T Consensus       305 ~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~-------~~~~~~~i~~~L~~  373 (380)
T TIGR01127       305 KVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR-------GKEHLDEILKILRD  373 (380)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence            46899999999999999999999999999987543   11  2343333444331       23455566666654

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=86.11  E-value=5.8  Score=31.64  Aligned_cols=62  Identities=16%  Similarity=0.137  Sum_probs=37.8

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhc
Q 013389           37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETI  105 (444)
Q Consensus        37 ~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t-~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~  105 (444)
                      ++.|.-+||||-|++++.+|+  +.||....-.. ..+.+.-.+.+..++|     ++-.+.+.++|...
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~-----~~~~~~i~~~L~~~   65 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANG-----AEELAELLEDLKSA   65 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCc-----HHHHHHHHHHHHHC
Confidence            578899999999999999999  67777444332 2232222222222221     34456666677654

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=85.89  E-value=4.6  Score=41.61  Aligned_cols=84  Identities=14%  Similarity=0.228  Sum_probs=53.5

Q ss_pred             HHHHHHHHHhccCCCCceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeec-----CCceEEEEEEEEcCCCCCCChHH
Q 013389          309 RVIQCLEAAVGRRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVST-----ERDEALNIFYVTDEMGNPADPKI  383 (444)
Q Consensus       309 ~l~~~L~~al~rr~~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T-----~g~~a~d~FyV~d~~g~~v~~~~  383 (444)
                      .+...++..+.+ ..+...+.|.-+||||.|+++++.+.+.|.||....-..     .-+++.=.+.+ +..+    ...
T Consensus       290 ~l~~vi~~gl~~-~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~v-et~~----~~~  363 (380)
T TIGR01127       290 LLNKIIEKGLVK-SGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITL-ETRG----KEH  363 (380)
T ss_pred             HHHHHHHHHHHh-CCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEE-EeCC----HHH
Confidence            444444444432 223468999999999999999999999999998885541     12233333333 3322    356


Q ss_pred             HHHHHHHHhhccccc
Q 013389          384 IEAVRQKIGLSNLKV  398 (444)
Q Consensus       384 ~~~lr~~l~~~~~~~  398 (444)
                      .+.|.+.|.+.-..|
T Consensus       364 ~~~i~~~L~~~G~~v  378 (380)
T TIGR01127       364 LDEILKILRDMGYNF  378 (380)
T ss_pred             HHHHHHHHHHcCCcc
Confidence            678888877654443

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=85.68  E-value=3.3  Score=32.41  Aligned_cols=47  Identities=17%  Similarity=0.222  Sum_probs=36.7

Q ss_pred             EEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee-CCeEEEEEEEEc
Q 013389          118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKD  164 (444)
Q Consensus       118 ~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~-~~~~~dvf~V~d  164 (444)
                      .+.+..+|+||-|+++-.+|+.+|+|+..-+..-. +....-.|||.-
T Consensus         2 sl~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~   49 (74)
T cd04929           2 SVIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC   49 (74)
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence            35566689999999999999999999998777653 334445677765

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=85.34  E-value=2.2  Score=46.11  Aligned_cols=61  Identities=26%  Similarity=0.482  Sum_probs=45.0

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecC--CceEEEEEEEEcCCCCCCChHHHHHHHH
Q 013389          325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTE--RDEALNIFYVTDEMGNPADPKIIEAVRQ  389 (444)
Q Consensus       325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~--g~~a~d~FyV~d~~g~~v~~~~~~~lr~  389 (444)
                      ++.+=+.-.|+||.+..|+.+|.++++||....+.-.  |+.+.-++-+    ..+++++.+++|++
T Consensus       452 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~----D~~v~~~~l~~i~~  514 (526)
T PRK13581        452 GHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV----DDPVPEEVLEELRA  514 (526)
T ss_pred             ceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC----CCCCCHHHHHHHhc
Confidence            3455556799999999999999999999999998753  3444444433    34666677777774

>PRK08198 threonine dehydratase; Provisional

Probab=85.29  E-value=6.2  Score=40.99  Aligned_cols=37  Identities=22%  Similarity=0.372  Sum_probs=32.8

Q ss_pred             CCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEE
Q 013389          114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVW  150 (444)
Q Consensus       114 ~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~  150 (444)
                      .....+.|.-+|+||-|+++..+++..|.||.+....
T Consensus       325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~  361 (404)
T PRK08198        325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD  361 (404)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence            3456899999999999999999999999999987654

>PRK06349 homoserine dehydrogenase; Provisional

Probab=85.04  E-value=3.9  Score=42.94  Aligned_cols=51  Identities=22%  Similarity=0.215  Sum_probs=41.1

Q ss_pred             CceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcC
Q 013389          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDC  165 (444)
Q Consensus       115 ~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~  165 (444)
                      ..+-|.+...|+||.|++|+++|+++++||.+.......+....++++++.
T Consensus       347 ~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~  397 (426)
T PRK06349        347 SKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHE  397 (426)
T ss_pred             eeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEe
Confidence            457888999999999999999999999999987655444455567777774

>PRK12483 threonine dehydratase; Reviewed

Probab=84.91  E-value=47  Score=35.94  Aligned_cols=142  Identities=11%  Similarity=0.088  Sum_probs=89.4

Q ss_pred             CCeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHH-HHHHHHHHHH-h----
Q 013389          245 RSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPER-QRVIQCLEAA-V----  318 (444)
Q Consensus       245 ~~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~-~~l~~~L~~a-l----  318 (444)
                      .....+.|.-+||||-|.+++.+|...  ||.+-.-......-..++......+     .+.. +.|.+.|++. .    
T Consensus       343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~-----~~~~~~~i~~~l~~~g~~~~d  415 (521)
T PRK12483        343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHP-----RHDPRAQLLASLRAQGFPVLD  415 (521)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCC-----hhhhHHHHHHHHHHCCCCeEE
Confidence            456788899999999999999999988  7765444333322233343333322     2244 7788888652 1    


Q ss_pred             ---------------ccCCC---CceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCC
Q 013389          319 ---------------GRRAS---EGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPAD  380 (444)
Q Consensus       319 ---------------~rr~~---~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~  380 (444)
                                     .++.+   +--.+-+.-+.|||=|.++.+.|..+ -||+..+=.-.|+....+|.=-.     +.
T Consensus       416 lsdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~-~niTeF~YR~~~~~~a~v~vgi~-----~~  489 (521)
T PRK12483        416 LTDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPR-WNISLFHYRNHGAADGRVLAGLQ-----VP  489 (521)
T ss_pred             CCCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCC-cceeeeeecCCCCCceEEEEEEe-----eC
Confidence                           11232   23467888899999999999998852 35555555445667777775322     22


Q ss_pred             hHHHHHHHHHHhhcccccc
Q 013389          381 PKIIEAVRQKIGLSNLKVK  399 (444)
Q Consensus       381 ~~~~~~lr~~l~~~~~~~~  399 (444)
                      ++..+.+.+.|.+.-..+.
T Consensus       490 ~~~~~~~~~~l~~~gy~~~  508 (521)
T PRK12483        490 EDERAALDAALAALGYPYW  508 (521)
T ss_pred             hhHHHHHHHHHHHCCCCeE
Confidence            3556778787776544443

>PRK06545 prephenate dehydrogenase; Validated

Probab=84.74  E-value=2.5  Score=43.26  Aligned_cols=48  Identities=19%  Similarity=0.364  Sum_probs=40.9

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEE
Q 013389          325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVT  372 (444)
Q Consensus       325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~  372 (444)
                      .+.|.|.-+||||-|+.|+..|.+.|+||.+.+|.-.-|....++.++
T Consensus       290 ~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~  337 (359)
T PRK06545        290 FYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQIS  337 (359)
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEE
Confidence            478999999999999999999999999999999965556666666665

>PRK14637 hypothetical protein; Provisional

Probab=84.27  E-value=11  Score=33.91  Aligned_cols=93  Identities=11%  Similarity=0.038  Sum_probs=65.0

Q ss_pred             CccHHHHHHHHHHhCCeeEEEEEEEecCC-EEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccCC-CCceEEEEEecC
Q 013389          257 RTKLLFDVVCTLTDMEYVVFHATINTAGE-RAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRA-SEGVRLELCMED  334 (444)
Q Consensus       257 RpGLL~~i~~~L~~~~~nI~~A~I~T~g~-~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr~-~~~~~lev~~~D  334 (444)
                      --|....+..++.++|+.+.+-.+...++ +... .+|...+|  ++- +.++.+.+.|.++|+.-. ...+.|||+++-
T Consensus         7 ~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lr-V~ID~~~g--V~i-ddC~~vSr~Is~~LD~~~~~~~y~LEVSSPG   82 (151)
T PRK14637          7 DLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVR-AVIYSAGG--VGL-DDCARVHRILVPRLEALGGVRDVFLEVSSPG   82 (151)
T ss_pred             cccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEE-EEEECCCC--CCH-HHHHHHHHHHHHHhcccccccCcEEEEeCCC
Confidence            35777888999999999999999998765 4554 44544444  443 379999999888886422 346899999773


Q ss_pred             CCchHHHHHHHHHHCCceE
Q 013389          335 RQGLLADVTRTFRENGLNV  353 (444)
Q Consensus       335 RpGLL~~Itr~l~e~gl~I  353 (444)
                      =--=|...-++-+-.|=.|
T Consensus        83 ldRpL~~~~~f~r~~G~~V  101 (151)
T PRK14637         83 IERVIKNAAEFSIFVGETV  101 (151)
T ss_pred             CCCCCCCHHHHHHhCCCEE
Confidence            3333666666666666443

>PRK09224 threonine dehydratase; Reviewed

Probab=84.18  E-value=45  Score=35.88  Aligned_cols=139  Identities=13%  Similarity=0.097  Sum_probs=86.4

Q ss_pred             CCeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH-h-----
Q 013389          245 RSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAA-V-----  318 (444)
Q Consensus       245 ~~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~a-l-----  318 (444)
                      .....+.|.-+||||=|.+++.+|.  +.||..-+-.-.+..-..+|+.....+.    +.+.+.|.+.|++. .     
T Consensus       326 ~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~----~~~~~~i~~~L~~~gy~~~~l  399 (504)
T PRK09224        326 QREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRG----QEERAEIIAQLRAHGYPVVDL  399 (504)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCCh----hhHHHHHHHHHHHcCCCeEEC
Confidence            4466888999999999999999999  5677654433333223334444333221    22377888888653 1     


Q ss_pred             --------------ccCCC---CceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCCh
Q 013389          319 --------------GRRAS---EGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADP  381 (444)
Q Consensus       319 --------------~rr~~---~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~  381 (444)
                                    .++.+   +-..+.+.=+.|||-|.+....|. -+-||+..+=.-.|...-.++ |    |-.+.+
T Consensus       400 s~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr~~~~~~g~vl-v----gi~~~~  473 (504)
T PRK09224        400 SDDELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYRNHGADYGRVL-A----GFQVPD  473 (504)
T ss_pred             CCCHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEccCCcccccEE-E----EEecCh
Confidence                          12332   234678888999999999988777 678998888853333322232 2    223323


Q ss_pred             HHHHHHHHHHhhcc
Q 013389          382 KIIEAVRQKIGLSN  395 (444)
Q Consensus       382 ~~~~~lr~~l~~~~  395 (444)
                      ...+.+.+.|.+.-
T Consensus       474 ~~~~~~~~~l~~~~  487 (504)
T PRK09224        474 ADEPEFEAFLDELG  487 (504)
T ss_pred             hhHHHHHHHHHHcC
Confidence            35677777776643

>PRK11898 prephenate dehydratase; Provisional

Probab=84.18  E-value=4.2  Score=40.32  Aligned_cols=112  Identities=19%  Similarity=0.260  Sum_probs=67.9

Q ss_pred             HHhCCeeEEEEEEEecC-CEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEec-CCCchHHHHHHH
Q 013389          268 LTDMEYVVFHATINTAG-ERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVRLELCME-DRQGLLADVTRT  345 (444)
Q Consensus       268 L~~~~~nI~~A~I~T~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr~~~~~~lev~~~-DRpGLL~~Itr~  345 (444)
                      ....|+.|..-.|.... ++..  |+|......+.                ........+.|-+... |+||-|+++-..
T Consensus       156 a~~ygL~il~~~I~d~~~N~TR--F~vi~~~~~~~----------------~~~~~~~ktslif~l~~~~pGsL~~~L~~  217 (283)
T PRK11898        156 AELYGLEILAEDIQDYPNNRTR--FWLLGRKKPPP----------------PLRTGGDKTSLVLTLPNNLPGALYKALSE  217 (283)
T ss_pred             HHHcCCcEehhcCCCCCccceE--EEEEEcCcccC----------------CCCCCCCeEEEEEEeCCCCccHHHHHHHH
Confidence            34568888877776643 3444  77764422100                0001111344555554 469999999999


Q ss_pred             HHHCCceEEEEEeecCC-ceEEEEEEEEcCCCCCCChHHHHHHHHHHhhcccccc
Q 013389          346 FRENGLNVTRAEVSTER-DEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVK  399 (444)
Q Consensus       346 l~e~gl~I~~A~i~T~g-~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~~  399 (444)
                      |+++|+|+++.+..-.. ..-.=.||| |.+|.. ++..++.+-+.|.+....++
T Consensus       218 F~~~~INLt~IeSRP~~~~~~~y~F~v-d~eg~~-~~~~~~~al~~L~~~~~~~k  270 (283)
T PRK11898        218 FAWRGINLTRIESRPTKTGLGTYFFFI-DVEGHI-DDVLVAEALKELEALGEDVK  270 (283)
T ss_pred             HHHCCCCeeeEecccCCCCCccEEEEE-EEEccC-CCHHHHHHHHHHHHhcCcEE
Confidence            99999999999997544 445667888 666765 33344444455555443444

>PRK12483 threonine dehydratase; Reviewed

Probab=84.12  E-value=40  Score=36.51  Aligned_cols=120  Identities=13%  Similarity=0.112  Sum_probs=72.6

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCC---
Q 013389           33 PTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG---  108 (444)
Q Consensus        33 ~~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t-~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~---  108 (444)
                      .....+.|.-+||||-|.+++.+|...  ||.+.+-.. ..+.+ -++....-.+    .+...+.|.++|......   
T Consensus       343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~-~v~v~ie~~~----~~~~~~~i~~~l~~~g~~~~d  415 (521)
T PRK12483        343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREA-HLFVGVQTHP----RHDPRAQLLASLRAQGFPVLD  415 (521)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCee-EEEEEEEeCC----hhhhHHHHHHHHHHCCCCeEE
Confidence            355688899999999999999999988  888766543 22222 3343333222    122225666677554311   


Q ss_pred             -----------C------CCCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEE
Q 013389          109 -----------R------SNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLI  160 (444)
Q Consensus       109 -----------~------~~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf  160 (444)
                                 |      +.....--.+.|.-|.|||-|.+.+.+|.. ..||..-+=--++...+-+|
T Consensus       416 lsdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~-~~niTeF~YR~~~~~~a~v~  483 (521)
T PRK12483        416 LTDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGP-RWNISLFHYRNHGAADGRVL  483 (521)
T ss_pred             CCCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCC-CcceeeeeecCCCCCceEEE
Confidence                       1      111223346778889999999999999984 24555433322333444443

>PRK08818 prephenate dehydrogenase; Provisional

Probab=83.96  E-value=2.5  Score=43.66  Aligned_cols=49  Identities=12%  Similarity=0.053  Sum_probs=38.0

Q ss_pred             CceEEEEEEc-CCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEc
Q 013389          115 GLTALELTGT-DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD  164 (444)
Q Consensus       115 ~~t~i~v~~~-DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d  164 (444)
                      ..+.|.+.-+ |+||-|++|..+|+.+|+||.+-++ .++.-..-.||+.-
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~  343 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGF  343 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEE
Confidence            4677888886 9999999999999999999999999 33322222277765

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=83.95  E-value=53  Score=34.82  Aligned_cols=107  Identities=13%  Similarity=0.205  Sum_probs=69.1

Q ss_pred             CCeEEEEEEeCC---CccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCC
Q 013389           33 PTATLVKVDSAR---RHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGR  109 (444)
Q Consensus        33 ~~~t~V~v~~~d---r~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~  109 (444)
                      .+.+.|+|.+..   ++|.++++.+.|.+.|+++.--.......+  ..|.|...+.     ......+++.......  
T Consensus       305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~-----~~a~~~l~~~~~~~~~--  375 (447)
T COG0527         305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDA-----PRALRALLEEKLELLA--  375 (447)
T ss_pred             CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhH-----HHHHHHHHHHHhhhcc--
Confidence            344556655543   459999999999999999976555433333  3577665322     2233444444332210  


Q ss_pred             C-CCCCCceEEEEEEc---CCcchHHHHHHHHHHCCCeEEEEE
Q 013389          110 S-NSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAK  148 (444)
Q Consensus       110 ~-~~~~~~t~i~v~~~---DrpGLl~~i~~vL~~~~~~I~~A~  148 (444)
                      + ....+.-.|.+.|.   ..||..+++..+|++.++||....
T Consensus       376 ~v~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is  418 (447)
T COG0527         376 EVEVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS  418 (447)
T ss_pred             eEEeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE
Confidence            0 12334556777765   578999999999999999999766

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=83.69  E-value=3.1  Score=37.71  Aligned_cols=69  Identities=28%  Similarity=0.419  Sum_probs=49.8

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHCCceEEEEEee-cCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccccc
Q 013389          326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVS-TERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKE  400 (444)
Q Consensus       326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~-T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~~~  400 (444)
                      ..+.+--.|.||.|+.++-.|+++|+||.+..+. |..+....+=.++.  |   ++..++++.++|... .+|-+
T Consensus         5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~--g---~~~~~EQi~kQL~kL-idV~k   74 (163)
T COG0440           5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS--G---DEQVLEQIIKQLNKL-IDVLK   74 (163)
T ss_pred             EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc--C---CcchHHHHHHHHHhh-cccee
Confidence            4577788999999999999999999999999885 44444443333432  3   346678888888873 34443

>PRK09084 aspartate kinase III; Validated

Probab=82.88  E-value=14  Score=39.10  Aligned_cols=101  Identities=19%  Similarity=0.271  Sum_probs=62.4

Q ss_pred             CCeEEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCC
Q 013389           33 PTATLVKVDSA---RRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGR  109 (444)
Q Consensus        33 ~~~t~V~v~~~---dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~  109 (444)
                      .+...|+|.+.   +.+|.++++.++|+++|++|.-... +...   ..|.|...+-..-......+.+.+.|...   .
T Consensus       304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~s-se~s---Is~~i~~~~~~~~~~~~~~~~l~~el~~~---~  376 (448)
T PRK09084        304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLITT-SEVS---VSLTLDTTGSTSTGDTLLTQALLTELSQL---C  376 (448)
T ss_pred             CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEec-cCcE---EEEEEechhhhhhhhHHHHHHHHHHHhcC---C
Confidence            45667888765   6899999999999999999987652 2221   23555542210000011223333334321   1


Q ss_pred             C-CCCCCceEEEEEEc---CCcchHHHHHHHHHHC
Q 013389          110 S-NSFNGLTALELTGT---DRVGLLSEVFAVLADL  140 (444)
Q Consensus       110 ~-~~~~~~t~i~v~~~---DrpGLl~~i~~vL~~~  140 (444)
                      + ....+...|.+.|.   ++||+++++..+|+..
T Consensus       377 ~i~~~~~va~IsvvG~gm~~~~gv~arif~aL~~~  411 (448)
T PRK09084        377 RVEVEEGLALVALIGNNLSKACGVAKRVFGVLEPF  411 (448)
T ss_pred             eEEEECCeEEEEEECCCcccCcChHHHHHHHHHhC
Confidence            1 12345678888886   7899999999999864

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=82.80  E-value=2.7  Score=45.40  Aligned_cols=61  Identities=20%  Similarity=0.456  Sum_probs=45.1

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecC--CceEEEEEEEEcCCCCCCChHHHHHHHH
Q 013389          325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTE--RDEALNIFYVTDEMGNPADPKIIEAVRQ  389 (444)
Q Consensus       325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~--g~~a~d~FyV~d~~g~~v~~~~~~~lr~  389 (444)
                      +..+=+.-.||||.+..|+.+|.++++||....+.-.  |+++.-++-+    ..+++++.+++|++
T Consensus       451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~----D~~v~~~~l~~i~~  513 (525)
T TIGR01327       451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSL----DQPVPDEVLEEIKA  513 (525)
T ss_pred             ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEc----CCCCCHHHHHHHhc
Confidence            4455556689999999999999999999999888644  4555544433    33666677777775

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric

Probab=82.69  E-value=2.3  Score=44.80  Aligned_cols=65  Identities=12%  Similarity=0.166  Sum_probs=46.5

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEE--EEEEEEcCCCCCCC-hHHHHHHHHH
Q 013389          325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEAL--NIFYVTDEMGNPAD-PKIIEAVRQK  390 (444)
Q Consensus       325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~--d~FyV~d~~g~~v~-~~~~~~lr~~  390 (444)
                      .+.|-+...|+||-|+++-++|.++|+|+++.+..-......  =.||| |.+|..-+ .+.++.|++.
T Consensus        31 ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfV-D~Eg~~~~l~~aL~~Lk~~   98 (464)
T TIGR01270        31 RLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLV-DVELFHYGLQEAMDLLKSG   98 (464)
T ss_pred             eEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEE-EEEcCHHHHHHHHHHHHHh
Confidence            356666779999999999999999999999999976654433  47888 45555411 1344555543

This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.

>PRK14640 hypothetical protein; Provisional

Probab=82.51  E-value=14  Score=33.08  Aligned_cols=92  Identities=17%  Similarity=0.181  Sum_probs=65.6

Q ss_pred             cHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc--CCCCceEEEEEecCCC
Q 013389          259 KLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR--RASEGVRLELCMEDRQ  336 (444)
Q Consensus       259 GLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r--r~~~~~~lev~~~DRp  336 (444)
                      .+...+..++..+|+.+.+-.+...++.-.-..+|...+|  ++- +.++.+.++|.++|+.  ..+..|.|||+++-=-
T Consensus         7 ~i~~li~p~~~~~G~el~dve~~~~~~~~~lrV~ID~~~g--v~l-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~   83 (152)
T PRK14640          7 RLTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDGENG--VSV-ENCAEVSHQVGAIMDVEDPITEEYYLEVSSPGLD   83 (152)
T ss_pred             HHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCC--CCH-HHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCC
Confidence            3455667789999999999999887653333455655555  443 3799999999998864  2356899999987444


Q ss_pred             chHHHHHHHHHHCCceE
Q 013389          337 GLLADVTRTFRENGLNV  353 (444)
Q Consensus       337 GLL~~Itr~l~e~gl~I  353 (444)
                      --|...-++-+-.|-.|
T Consensus        84 RpL~~~~~f~r~~G~~v  100 (152)
T PRK14640         84 RPLFKVAQFEKYVGQEA  100 (152)
T ss_pred             CcCCCHHHHHHhCCCeE
Confidence            44777777777777655

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=82.36  E-value=4  Score=44.03  Aligned_cols=36  Identities=25%  Similarity=0.375  Sum_probs=33.7

Q ss_pred             EEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC
Q 013389          327 RLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER  362 (444)
Q Consensus       327 ~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g  362 (444)
                      .+||.|.||.|+..+|...|..+++++...+|...|
T Consensus         2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~   37 (520)
T PRK10820          2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG   37 (520)
T ss_pred             eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence            589999999999999999999999999999997663

>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form

Probab=80.91  E-value=5.8  Score=41.63  Aligned_cols=63  Identities=25%  Similarity=0.402  Sum_probs=46.5

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecC-CceEEEEEEEEcCCCCCCCh---HHHHHHHHH
Q 013389          326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTE-RDEALNIFYVTDEMGNPADP---KIIEAVRQK  390 (444)
Q Consensus       326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~-g~~a~d~FyV~d~~g~~v~~---~~~~~lr~~  390 (444)
                      +.|-+...|+||-|++|-++|.++|+|+++.+..-. +..-.=.||| |.+|.. ++   +.++.|++.
T Consensus        17 TSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFV-D~eg~~-~~~v~~aL~~Lk~~   83 (436)
T TIGR01268        17 TSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFV-EFDEAS-DRKLEGVIEHLRQK   83 (436)
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEE-EEecCc-cHHHHHHHHHHHHh
Confidence            567777799999999999999999999999999654 3445667888 455654 22   344555543

The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.

>PRK14639 hypothetical protein; Provisional

Probab=80.63  E-value=15  Score=32.47  Aligned_cols=86  Identities=14%  Similarity=0.165  Sum_probs=61.7

Q ss_pred             HHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccC--CCCceEEEEEecCCCchHHHH
Q 013389          265 VCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRR--ASEGVRLELCMEDRQGLLADV  342 (444)
Q Consensus       265 ~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr--~~~~~~lev~~~DRpGLL~~I  342 (444)
                      -.++..+|+.+.+......++...-..+|....|  ++- +.++++.+.|.+.|+..  .+..|.|||+++.----|...
T Consensus         4 ep~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~g--v~i-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~RpL~~~   80 (140)
T PRK14639          4 EALCKECGVSFYDDELVSENGRKIYRVYITKEGG--VNL-DDCERLSELLSPIFDVEPPVSGEYFLEVSSPGLERKLSKI   80 (140)
T ss_pred             hHhHHhCCCEEEEEEEEecCCCcEEEEEEeCCCC--CCH-HHHHHHHHHHHHHhccccccCCCeEEEEeCCCCCCcCCCH
Confidence            4568899999999999987764444555654444  443 37999999999988643  356799999987444446667


Q ss_pred             HHHHHHCCceE
Q 013389          343 TRTFRENGLNV  353 (444)
Q Consensus       343 tr~l~e~gl~I  353 (444)
                      -.+-+-.|-.|
T Consensus        81 ~~f~r~~G~~v   91 (140)
T PRK14639         81 EHFAKSIGELV   91 (140)
T ss_pred             HHHHHhCCCEE
Confidence            77777777665

>PRK11899 prephenate dehydratase; Provisional

Probab=80.40  E-value=8.9  Score=38.01  Aligned_cols=49  Identities=10%  Similarity=0.089  Sum_probs=39.5

Q ss_pred             ceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee-CCeEEEEEEEEc
Q 013389          116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKD  164 (444)
Q Consensus       116 ~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~-~~~~~dvf~V~d  164 (444)
                      .|.|.+..+|+||.|+++-.+|+.+|+|+..-+..-. ++-..=.|||.-
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~  243 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI  243 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE
Confidence            4778888899999999999999999999998777644 333444788876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	444
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	1e-04
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	1e-04
1u8s_A	192	Glycine cleavage system transcriptional repressor,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.7 bits (154), Expect = 6e-11
 Identities = 71/477 (14%), Positives = 151/477 (31%), Gaps = 115/477 (24%)

Query: 1   MKDMEWPACLD---------EYEKLVI---RMNTPRVVIDNAVCPTATLVK--VDSARR- 45
           + + +     D         E + +++    ++    +    +     +V+  V+   R 
Sbjct: 30  VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89

Query: 46  -HGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLE- 103
            +  L+  ++       ++ + YI    R + D       N   ++       + Q+L  
Sbjct: 90  NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN---VSRLQPYLKLRQALLE 146

Query: 104 -------TIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLAD--LQCSVVEAKV-WTHN 153
                   I  G   S  G T +                V     +QC  ++ K+ W   
Sbjct: 147 LRPAKNVLID-GVLGS--GKTWV-------------ALDVCLSYKVQC-KMDFKIFW--- 186

Query: 154 GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLH 213
                 + +K+CNS   + +  Q      +L   +  +   RS   +      H+ +   
Sbjct: 187 ------LNLKNCNSPETVLEMLQ------KLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 214 QMMFADRDYER-MPVLRHSTDYPVVTVQNWADRSYSVVNVQCK----DRTKLLFDVVCTL 268
           + +   + YE  + VL +        VQN   ++++  N+ CK     R K + D +   
Sbjct: 235 RRLLKSKPYENCLLVLLN--------VQNA--KAWNAFNLSCKILLTTRFKQVTDFLSAA 284

Query: 269 TDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVRL 328
           T     + H +  T          ++++        P           ++    +E +R 
Sbjct: 285 TTTHISLDHHS-MTLTPDEVKSLLLKYL-DCRPQDLPREVLTTNPRRLSI---IAESIRD 339

Query: 329 ELCMEDR-QGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAV 387
            L   D  + +  D   T  E+ LNV       +  + L++F        P    I   +
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF--------PPSAHIPTIL 391

Query: 388 RQKIGLSNLKVKELPMIYHQKGESEEQTVGVGGAVLLSLGSLVRRN-------LYNL 437
                        L +I+    +S+   V       L   SLV +        + ++
Sbjct: 392 -------------LSLIWFDVIKSDVMVV----VNKLHKYSLVEKQPKESTISIPSI 431

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 4e-05
 Identities = 60/439 (13%), Positives = 125/439 (28%), Gaps = 151/439 (34%)

Query: 11  DEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS 70
           +  E ++  +      ID          + D +    + + ++Q      LL  K Y + 
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTS-----RSDHSSNIKLRIHSIQ-AELRRLLKSKPYENC 246

Query: 71  ----DGRFFMDVFHVTDLN----GNK--LT--DESVISYIEQSLETIHYGRSNSFNGLTA 118
                     +V +    N      K  LT   + V  ++  +  T H    +    LT 
Sbjct: 247 LLVLL-----NVQNAKAWNAFNLSCKILLTTRFKQVTDFL-SAATTTHISLDHHSMTLTP 300

Query: 119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQID 178
            E+       LL +        Q    E    T N R  S+I          I D   + 
Sbjct: 301 DEV-----KSLLLKYLDC--RPQDLPREVL--TTNPRRLSII-------AESIRD--GLA 342

Query: 179 RIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVT 238
             +   ++V     +       +  ++   E   ++ M     ++R+ V   S   P + 
Sbjct: 343 TWD-NWKHV-----NCDKLTTIIESSLNVLEPAEYRKM-----FDRLSVFPPSAHIPTIL 391

Query: 239 VQN-WAD-------------RSYSVVNVQCKDRTK----LLFDVVCTLTDM--------- 271
           +   W D               YS+V  Q K+ T     +  ++   L +          
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451

Query: 272 -----------------------EYVVFHATINTAGERA------YLEF----------- 291
                                   ++  H       ER       +L+F           
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511

Query: 292 ------------------YIRHIDGTPISSEPERQRVI--------QCLEAAVGRRASEG 325
                             Y  +I      ++P+ +R++        +  E  +  + ++ 
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYI----CDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567

Query: 326 VRLELCMEDRQGLLADVTR 344
           +R+ L M + + +  +  +
Sbjct: 568 LRIAL-MAEDEAIFEEAHK 585

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Length = 88

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 9/72 (12%), Positives = 32/72 (44%), Gaps = 7/72 (9%)

Query: 116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQ 175
           L  + + G D+ G+ +++  V++    ++    +   +G     + +        ++++ 
Sbjct: 5   LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIF-------VKNTD 57

Query: 176 QIDRIEARLRNV 187
           ++  +  +LR V
Sbjct: 58  KLTTLMDKLRKV 69

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Length = 88

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 7/65 (10%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPAD-PKII 384
             + +  ED+ G+   +T    +   N+    ++ +         +   + N      ++
Sbjct: 6   AGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMI--FVKNTDKLTTLM 63

Query: 385 EAVRQ 389
           + +R+
Sbjct: 64  DKLRK 68

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Length = 192

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 22/158 (13%), Positives = 49/158 (31%), Gaps = 14/158 (8%)

Query: 245 RSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSE 304
             + V+     DR  +  +VV  +T     +  + I   G+   L   I          E
Sbjct: 4   TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVE 63

Query: 305 PERQRVIQCL---------EAAVGRRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTR 355
                + Q                +  +  V + +  +D+ GL    T+ F +  + +  
Sbjct: 64  TTLPLLGQQHDLITMMKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMAS 123

Query: 356 AEVSTERDEAL----NIFYVTDEMGNPADPKIIEAVRQ 389
               T   + L    N F++       +    +  +++
Sbjct: 124 LSAQTISKDKLHSEQNQFHIAISARVDSGCN-LMQLQE 160

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	444
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.78
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.72
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.7
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.63
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.89
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.84
2f06_A	144	Conserved hypothetical protein; structural genomic	98.63
2f06_A	144	Conserved hypothetical protein; structural genomic	98.39
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.16
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.1
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.89
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	97.86
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.82
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.72
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.54
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.41
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.38
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	97.37
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	97.28
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.28
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.28
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.26
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.25
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.24
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.17
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.12
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	97.09
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.02
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	97.0
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	96.96
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	96.94
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.88
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	96.8
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.78
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	96.72
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.6
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	96.59
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.29
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	96.13
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	95.92
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	95.73
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	95.66
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	95.52
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	95.19
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	95.01
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	94.94
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	94.46
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	93.45
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	93.45
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	92.74
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	91.99
3luy_A	329	Probable chorismate mutase; structural genomics, A	91.95
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	91.88
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	91.4
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	91.36
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	90.43
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	89.78
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	88.81
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	87.73
1phz_A	429	Protein (phenylalanine hydroxylase); aromatic amin	85.02
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	84.17
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	82.95
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	82.03

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.78  E-value=1.6e-18  Score=160.81  Aligned_cols=143  Identities=16%  Similarity=0.171  Sum_probs=114.5

Q ss_pred             CeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc-----
Q 013389          246 SYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR-----  320 (444)
Q Consensus       246 ~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r-----  320 (444)
                      ..++|+|+|+|||||+++|+++|+++|+||.+|++++..+.+.-.|.+.... .  ..+..++.|++.|...+.+     
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~-~--~~~~~~~~l~~~L~~~~~~~~~~~   80 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNA-K--DGKLIQSALESALPGFQISTRRAS   80 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS-S--SSHHHHHHHHHHSTTCEEEEEECC
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecC-c--cchhHHHHHHHHHHHHHHhcCCeE
Confidence            4579999999999999999999999999999999999877665578886442 1  2233577788877654321     


Q ss_pred             --------CCCCceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC--ceEEEEEEEEcCCCCCCChHHHHHHHHH
Q 013389          321 --------RASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER--DEALNIFYVTDEMGNPADPKIIEAVRQK  390 (444)
Q Consensus       321 --------r~~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g--~~a~d~FyV~d~~g~~v~~~~~~~lr~~  390 (444)
                              .....++|+|.|+|||||+++||++|+++|+||..++..|.+  +++.+.||++...+.| ++.. +.|+++
T Consensus        81 ~~~~~~~~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~-~~~~-~~l~~~  158 (195)
T 2nyi_A           81 SVAERHVSPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFP-FPLY-QEVVTA  158 (195)
T ss_dssp             CC----CCTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEE-GGGH-HHHHHH
T ss_pred             EEEeCCcCCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcC-CCcc-HHHHHH
Confidence                    011258999999999999999999999999999999999998  7789999998766555 2345 778887


Q ss_pred             Hhh
Q 013389          391 IGL  393 (444)
Q Consensus       391 l~~  393 (444)
                      |..
T Consensus       159 l~~  161 (195)
T 2nyi_A          159 LSR  161 (195)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            775

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.72  E-value=1.6e-16  Score=146.78  Aligned_cols=139  Identities=17%  Similarity=0.152  Sum_probs=109.2

Q ss_pred             eEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc------
Q 013389          247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR------  320 (444)
Q Consensus       247 ~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r------  320 (444)
                      ..+|+|.|+||||++++|+++|+++|+||.++++++.++.+.-.|.+..+       +...++|++.|.+...+      
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~~~~~~~~~~~   78 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS-------PSNITRVETTLPLLGQQHDLITM   78 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC-------HHHHHHHHHHHHHHHHHHTCEEE
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC-------CCCHHHHHHHHHHHHHhcCCEEE
Confidence            57899999999999999999999999999999999988877768888643       13577888887654310      


Q ss_pred             --C---C-----CCceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCc----eEEEEEEEEcCCCCCCChHHHHH
Q 013389          321 --R---A-----SEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERD----EALNIFYVTDEMGNPADPKIIEA  386 (444)
Q Consensus       321 --r---~-----~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~----~a~d~FyV~d~~g~~v~~~~~~~  386 (444)
                        +   .     ...++|+|.++||||+|++|+++|+++|+||..++..|.++    ++.+.||++...+.| ++...+.
T Consensus        79 ~~~~~~~~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~-~~~~~~~  157 (192)
T 1u8s_A           79 MKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD-SGCNLMQ  157 (192)
T ss_dssp             EEEECCCCCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC-TTSCHHH
T ss_pred             EEeCCCCCCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC-CCCCHHH
Confidence              1   1     12479999999999999999999999999999999999985    689999998765444 2234567


Q ss_pred             HHHHHhh
Q 013389          387 VRQKIGL  393 (444)
Q Consensus       387 lr~~l~~  393 (444)
                      |+++|..
T Consensus       158 l~~~l~~  164 (192)
T 1u8s_A          158 LQEEFDA  164 (192)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777765

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.70  E-value=2.9e-16  Score=145.55  Aligned_cols=148  Identities=20%  Similarity=0.192  Sum_probs=111.1

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccC-C---
Q 013389           34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHY-G---  108 (444)
Q Consensus        34 ~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t-~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~-~---  108 (444)
                      ...+|+|.|+|||||++.++++|+++||||.+|++++ .++++| .|.|..+..   ......+.|+++|..... +   
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m-~~~v~~~~~---~~~~~~~~l~~~L~~~~~~~~~~   79 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAM-IVLVSLNAK---DGKLIQSALESALPGFQISTRRA   79 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEE-EEEEEESSS---SSHHHHHHHHHHSTTCEEEEEEC
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEE-EEEEEecCc---cchhHHHHHHHHHHHHHHhcCCe
Confidence            4579999999999999999999999999999999986 555555 788875421   222356778888864421 0   


Q ss_pred             ---CC---CCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC--CeEEEEEEEEcCCCCCCCCChHHHHHH
Q 013389          109 ---RS---NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN--GRIASLIYVKDCNSGSPIEDSQQIDRI  180 (444)
Q Consensus       109 ---~~---~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~--~~~~dvf~V~d~~~g~~i~~~~r~~~i  180 (444)
                         ++   ......+.|+|.|+|||||+++|+++|+++|+||.+++..|.+  .+..+.|++... .+.+  ++.. +.|
T Consensus        80 ~~~~~~~~~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~-~~~~--~~~~-~~l  155 (195)
T 2nyi_A           80 SSVAERHVSPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSR-VAFP--FPLY-QEV  155 (195)
T ss_dssp             CCC----CCTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEE-EEEE--GGGH-HHH
T ss_pred             EEEEeCCcCCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEE-EEcC--CCcc-HHH
Confidence               10   1123568999999999999999999999999999999999976  556688887763 2322  2334 778


Q ss_pred             HHHHHHHhc
Q 013389          181 EARLRNVLK  189 (444)
Q Consensus       181 ~~~L~~vL~  189 (444)
                      ++.|..+..
T Consensus       156 ~~~l~~~a~  164 (195)
T 2nyi_A          156 VTALSRVEE  164 (195)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888876543

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.63  E-value=6.3e-15  Score=135.98  Aligned_cols=146  Identities=14%  Similarity=0.137  Sum_probs=105.1

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhcc---CC--
Q 013389           34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIH---YG--  108 (444)
Q Consensus        34 ~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~---~~--  108 (444)
                      ...+|+|.|+|||||+++++++|+++|+||.++++++..|.+.-.|.|..+.       ...+.|++.|....   ..  
T Consensus         5 ~~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~-------~~~~~l~~~L~~~~~~~~~~~   77 (192)
T 1u8s_A            5 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP-------SNITRVETTLPLLGQQHDLIT   77 (192)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH-------HHHHHHHHHHHHHHHHHTCEE
T ss_pred             cEEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC-------CCHHHHHHHHHHHHHhcCCEE
Confidence            3578999999999999999999999999999999987666555578886531       23344555443221   11  


Q ss_pred             ------C-C-CCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCC----eEEEEEEEEcCCCCCCCCChHH
Q 013389          109 ------R-S-NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNG----RIASLIYVKDCNSGSPIEDSQQ  176 (444)
Q Consensus       109 ------~-~-~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~----~~~dvf~V~d~~~g~~i~~~~r  176 (444)
                            + + ......+.|+|.++||||++++|+.+|+++|+||.+++..|.+.    +..+.|++... .+.+  ++..
T Consensus        78 ~~~~~~~~~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~-~~~~--~~~~  154 (192)
T 1u8s_A           78 MMKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAIS-ARVD--SGCN  154 (192)
T ss_dssp             EEEEECCCCCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEE-EEEC--TTSC
T ss_pred             EEEeCCCCCCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEE-EeCC--CCCC
Confidence                  1 1 23346789999999999999999999999999999999999763    56778877663 2222  1223


Q ss_pred             HHHHHHHHHHHhc
Q 013389          177 IDRIEARLRNVLK  189 (444)
Q Consensus       177 ~~~i~~~L~~vL~  189 (444)
                      .+.|++.|..+..
T Consensus       155 ~~~l~~~l~~~~~  167 (192)
T 1u8s_A          155 LMQLQEEFDALCT  167 (192)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            5678888876544

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.89  E-value=5e-08  Score=99.80  Aligned_cols=143  Identities=12%  Similarity=0.008  Sum_probs=99.7

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhcc---CC--
Q 013389           34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIH---YG--  108 (444)
Q Consensus        34 ~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~---~~--  108 (444)
                      ...+|+|.|+|||||++.++++|+++|+||.+++.+..+|+|.-...+.-+... .    ..+.|+++|....   ..  
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~-~----~~~~l~~~l~~~~~~~~~~~   85 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADV-A----DGPALRHDVEAAIRKVGLDV   85 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHH-H----TSHHHHHHHHHHHHHTTCEE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCc-C----CHHHHHHHHHHHHHHcCeEE
Confidence            457899999999999999999999999999999999888877655555432110 0    1134444443321   11  


Q ss_pred             ---C----C-CCCCCceEEEEEEcC-CcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHH
Q 013389          109 ---R----S-NSFNGLTALELTGTD-RVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDR  179 (444)
Q Consensus       109 ---~----~-~~~~~~t~i~v~~~D-rpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~  179 (444)
                         +    + .....+..+++.+.| +||++++|+.+|+++|+||......+......-.|+|.-+    + .+   ...
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~~----~-~~---~~~  157 (415)
T 3p96_A           86 SIERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVP----P-GA---DEA  157 (415)
T ss_dssp             EEEECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEECC----T-TC---HHH
T ss_pred             EEEECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeCC----C-CC---HHH
Confidence               1    1 233568899999999 9999999999999999999988877743344334776442    1 12   245


Q ss_pred             HHHHHHHHhc
Q 013389          180 IEARLRNVLK  189 (444)
Q Consensus       180 i~~~L~~vL~  189 (444)
                      ++++|.+.+.
T Consensus       158 l~~~l~~l~~  167 (415)
T 3p96_A          158 LRTALNRVSS  167 (415)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            6666665543

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.84  E-value=9.7e-08  Score=97.62  Aligned_cols=122  Identities=13%  Similarity=0.074  Sum_probs=91.4

Q ss_pred             CeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH---hc---
Q 013389          246 SYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAA---VG---  319 (444)
Q Consensus       246 ~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~a---l~---  319 (444)
                      ...+|+|.|+||||+.+.|++.|+++|+||.+++-++.++++.-...+.-+++.     ...+.|++.|...   +.   
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~-----~~~~~l~~~l~~~~~~~~~~~   85 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADV-----ADGPALRHDVEAAIRKVGLDV   85 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHH-----HTSHHHHHHHHHHHHHTTCEE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCc-----CCHHHHHHHHHHHHHHcCeEE
Confidence            457899999999999999999999999999999999888876655555422110     0225666666542   21   


Q ss_pred             ---c-----CC--CCceEEEEEecC-CCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEE
Q 013389          320 ---R-----RA--SEGVRLELCMED-RQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVT  372 (444)
Q Consensus       320 ---r-----r~--~~~~~lev~~~D-RpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~  372 (444)
                         .     +.  ...+.+++.+.| ++|++.+|+.+|.++|+||..+..-+......=.|++.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~  149 (415)
T 3p96_A           86 SIERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVS  149 (415)
T ss_dssp             EEEECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEE
T ss_pred             EEEECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEee
Confidence               1     11  225899999999 99999999999999999999998877444343337774

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.63  E-value=1.1e-06  Score=76.52  Aligned_cols=113  Identities=17%  Similarity=0.193  Sum_probs=76.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCCCCCCC
Q 013389           35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFN  114 (444)
Q Consensus        35 ~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~~~~~~  114 (444)
                      ...++|..+|+||.++++++.|++.|+||..-.+.......+-.|.+.+       .+...+.|++    ...    ...
T Consensus         6 ~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~d-------~~~a~~~L~~----~G~----~v~   70 (144)
T 2f06_A            6 AKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSD-------PDKAYKALKD----NHF----AVN   70 (144)
T ss_dssp             EEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEESC-------HHHHHHHHHH----TTC----CEE
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeCC-------HHHHHHHHHH----cCC----eEe
Confidence            4578999999999999999999999999998877532221122344322       1333333332    211    111


Q ss_pred             CceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEE
Q 013389          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYV  162 (444)
Q Consensus       115 ~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V  162 (444)
                      ....+.+..+|+||.+++++.+|+++|+||.....+..+++...+|.+
T Consensus        71 ~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~  118 (144)
T 2f06_A           71 ITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP  118 (144)
T ss_dssp             EEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE
T ss_pred             eeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe
Confidence            224677788999999999999999999999877665335566555544

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.39  E-value=5.7e-06  Score=72.02  Aligned_cols=112  Identities=11%  Similarity=0.067  Sum_probs=74.9

Q ss_pred             EEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccCCCCceE
Q 013389          248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVR  327 (444)
Q Consensus       248 tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr~~~~~~  327 (444)
                      ..++|..+|+||.++++++.|++.|+||..-.+....+...-.|.+  .      +   .++.++.|++. .-.......
T Consensus         7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~--~------d---~~~a~~~L~~~-G~~v~~~sv   74 (144)
T 2f06_A            7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV--S------D---PDKAYKALKDN-HFAVNITDV   74 (144)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE--S------C---HHHHHHHHHHT-TCCEEEEEE
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEe--C------C---HHHHHHHHHHc-CCeEeeeeE
Confidence            4678889999999999999999999999987765433322212322  1      2   23444445432 111111235


Q ss_pred             EEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEE
Q 013389          328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYV  371 (444)
Q Consensus       328 lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV  371 (444)
                      +-+..+|+||.+++++++|+++|+||........+.++.-+|-+
T Consensus        75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~  118 (144)
T 2f06_A           75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP  118 (144)
T ss_dssp             EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe
Confidence            77778899999999999999999999876665334455544433

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.16  E-value=1.1e-05  Score=64.39  Aligned_cols=67  Identities=12%  Similarity=0.166  Sum_probs=52.2

Q ss_pred             CceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHh
Q 013389          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL  188 (444)
Q Consensus       115 ~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL  188 (444)
                      ..+.|.|.++||||++++|+++|+++|+||.+....+..+.+...+.+.-+  +     ...++.|.+.|.++-
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~--~-----~~~l~~l~~~L~~~~   70 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD--E-----KQDFTYLRNEFEAFG   70 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES--S-----CCCHHHHHHHHHHHH
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC--C-----CCCHHHHHHHHHHHH
Confidence            357899999999999999999999999999999998877766666666442  1     123466777777643

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.10  E-value=2.6e-05  Score=62.11  Aligned_cols=65  Identities=11%  Similarity=0.101  Sum_probs=51.1

Q ss_pred             CeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 013389          246 SYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEA  316 (444)
Q Consensus       246 ~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~  316 (444)
                      ....|+|.|+||||++++|+.+|+++|+||.+....+..+.+.-.+.+.-++.      ...+.|.+.|.+
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~------~~l~~l~~~L~~   68 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEK------QDFTYLRNEFEA   68 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSC------CCHHHHHHHHHH
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCC------CCHHHHHHHHHH
Confidence            34689999999999999999999999999999999887777766666643321      135667777654

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.89  E-value=5e-05  Score=59.72  Aligned_cols=63  Identities=13%  Similarity=0.352  Sum_probs=47.1

Q ss_pred             ceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHH
Q 013389          116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLR  185 (444)
Q Consensus       116 ~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~  185 (444)
                      .+.|.|.+.||||+|++|+++|++.|+||.+..+.+.++.+...|.+.-.       +++.++.+.+.|.
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~-------~~~~l~~l~~~L~   67 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK-------NTDKLTTLMDKLR   67 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES-------SHHHHHHHHHHHT
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC-------CHHHHHHHHHHHh
Confidence            56889999999999999999999999999999998866644444444432       3445555555554

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=97.86  E-value=0.015  Score=62.24  Aligned_cols=262  Identities=13%  Similarity=0.131  Sum_probs=154.5

Q ss_pred             EEEEEEe-CCCccHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhcc-------
Q 013389           36 TLVKVDS-ARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIH-------  106 (444)
Q Consensus        36 t~V~v~~-~dr~Gll~~i~~vL~~~~l~I~~A~i~t-~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~-------  106 (444)
                      +.|++.. ++++|.++++.+.|++.|++|.-...+. .+|..-..|.|...+-     ++..+.+++ +....       
T Consensus       271 ~~i~i~~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~~~-----~~a~~~l~~-~~~el~~~~~~~  344 (600)
T 3l76_A          271 AKVALLRVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKDLL-----NTAEAVTSA-IAPALRSYPEAD  344 (600)
T ss_dssp             EEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGGGH-----HHHHHHHHH-HGGGGSSSTTCS
T ss_pred             EEEEEeCCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHHHH-----HHHHHHHHH-HHHHhhcccccc
Confidence            3444443 6899999999999999999995443332 4554444566654311     112222332 22111       


Q ss_pred             CCCC-CCCCCceEEEEEEc---CCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHH
Q 013389          107 YGRS-NSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEA  182 (444)
Q Consensus       107 ~~~~-~~~~~~t~i~v~~~---DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~  182 (444)
                      .+.. ....+...|.|.|.   .+||..+++..+|++.++||....  |.. . --.|.|...       +   .++.-+
T Consensus       345 ~~~~v~~~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tSe-~-~Is~vI~~~-------d---~~~Av~  410 (600)
T 3l76_A          345 QEAEIIVEKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TSE-V-KVSCVIDQR-------D---ADRAIA  410 (600)
T ss_dssp             SSSEEEEECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--ECS-S-EEEEEEEGG-------G---HHHHHH
T ss_pred             CcceeEecCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cCC-C-EEEEEEcHH-------H---HHHHHH
Confidence            0000 12356778889887   699999999999999999998554  332 2 223444431       1   234455


Q ss_pred             HHHHHhcCCCcccccchhhcccccchhHHhhhhhccccccccccccCCCCCCCEEEEEecCCCCeEEEEEE-ccCCccHH
Q 013389          183 RLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQ-CKDRTKLL  261 (444)
Q Consensus       183 ~L~~vL~~~~~~~~~~~~~~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~-~~DRpGLL  261 (444)
                      .|.+.+..+....            .+ + ...      .+       ...-+-|..+    ++.+.|+|. .+|+||+.
T Consensus       411 aLh~~f~~~~t~~------------~~-~-~~~------~~-------~~~v~Gia~~----~~~a~i~i~~~~~~~g~~  459 (600)
T 3l76_A          411 ALSNAFGVTLSPP------------KN-Q-TDT------SH-------LPAVRGVALD----QDQAQIAIRHVPDRPGMA  459 (600)
T ss_dssp             HHHHHTTCCBCCC------------CC-C-CC----------------CCSCCEEEEE----CSEEEEEEEEEESSTTHH
T ss_pred             HHHHhhcccCCCc------------cc-c-ccc------cc-------cCceEEEEee----CCEEEEEEecCCCCccHH
Confidence            6776665421100            00 0 000      01       0011234443    456777775 58999999


Q ss_pred             HHHHHHHHhCCeeEEEEEEEec----CC--EEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccC-------CCCceEE
Q 013389          262 FDVVCTLTDMEYVVFHATINTA----GE--RAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRR-------ASEGVRL  328 (444)
Q Consensus       262 ~~i~~~L~~~~~nI~~A~I~T~----g~--~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr-------~~~~~~l  328 (444)
                      ++|...|++.|+||---..+..    .+  ...-.|.|...         ..++..+.|++....-       .+.-.+|
T Consensus       460 ~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~~---------d~~~a~~~l~~~~~~~~~~~v~~~~~~akV  530 (600)
T 3l76_A          460 AQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAEG---------DSSQAEAILQPLIKDWLDAAIVVNKAIAKV  530 (600)
T ss_dssp             HHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEHH---------HHHHHHHHHHHHTTTSTTCEEEEECCEEEE
T ss_pred             HHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeHH---------HHHHHHHHHHHHHHhcCCceEEEeCCeEEE
Confidence            9999999999999943322221    13  34445666532         3444444444421110       1123577


Q ss_pred             EEEe---cCCCchHHHHHHHHHHCCceEEEEE
Q 013389          329 ELCM---EDRQGLLADVTRTFRENGLNVTRAE  357 (444)
Q Consensus       329 ev~~---~DRpGLL~~Itr~l~e~gl~I~~A~  357 (444)
                      .|.+   ..+||+.+.+.++|.+.|+||....
T Consensus       531 SiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis  562 (600)
T 3l76_A          531 SIVGSGMIGHPGVAAHFFAALAQENINIEMIA  562 (600)
T ss_dssp             EEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE
T ss_pred             EEECcccccCccHHHHHHHHHHHCCCceEEEE
Confidence            8876   4899999999999999999998766

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.82  E-value=9.8e-05  Score=58.01  Aligned_cols=64  Identities=9%  Similarity=0.138  Sum_probs=50.6

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013389          325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGL  393 (444)
Q Consensus       325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~  393 (444)
                      .+.|.|.+.||||+|++|+++|++.|+||..+.+.+.++.+...|.+.-.     +...++++.++|.+
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~-----~~~~l~~l~~~L~~   68 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK-----NTDKLTTLMDKLRK   68 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES-----SHHHHHHHHHHHTT
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC-----CHHHHHHHHHHHhc
Confidence            46789999999999999999999999999999998876655555554322     23567788888776

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.72  E-value=0.00022  Score=63.70  Aligned_cols=109  Identities=12%  Similarity=0.161  Sum_probs=74.2

Q ss_pred             CCeEEEEEEe-CCCccHHHHHHHHHHhCCceEEEEEEE-ecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCCC
Q 013389           33 PTATLVKVDS-ARRHGILLEAVQVLTDLNLLIKKAYIS-SDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRS  110 (444)
Q Consensus        33 ~~~t~V~v~~-~dr~Gll~~i~~vL~~~~l~I~~A~i~-t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~~  110 (444)
                      .+.+.|+|.+ +|+||.++++.++|++.|+||.-...+ +.+|..--.|.|...+.     ++..+.+++ +.....+..
T Consensus        23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~~~-----~~a~~~l~~-~~~~l~~~~   96 (167)
T 2re1_A           23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRGDY-----KQTLEILSE-RQDSIGAAS   96 (167)
T ss_dssp             CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGGGH-----HHHHHHHHH-SSTTTTCSE
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEechHH-----HHHHHHHHH-HHHHcCCce
Confidence            4678889985 999999999999999999999876654 23453334566653211     223333443 211111011


Q ss_pred             -CCCCCceEEEEEEcC---CcchHHHHHHHHHHCCCeEEEE
Q 013389          111 -NSFNGLTALELTGTD---RVGLLSEVFAVLADLQCSVVEA  147 (444)
Q Consensus       111 -~~~~~~t~i~v~~~D---rpGLl~~i~~vL~~~~~~I~~A  147 (444)
                       ....+...+.|.|.+   +||.++++..+|++.|+||...
T Consensus        97 i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~i  137 (167)
T 2re1_A           97 IDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMI  137 (167)
T ss_dssp             EEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEE
T ss_pred             EEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEE
Confidence             123457889999987   9999999999999999999973

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.54  E-value=0.00088  Score=59.70  Aligned_cols=130  Identities=14%  Similarity=0.201  Sum_probs=83.7

Q ss_pred             CCeEEEEEEc-cCCccHHHHHHHHHHhCCeeEEEEEEEec-CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHh---c
Q 013389          245 RSYSVVNVQC-KDRTKLLFDVVCTLTDMEYVVFHATINTA-GERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAV---G  319 (444)
Q Consensus       245 ~~~tvv~V~~-~DRpGLL~~i~~~L~~~~~nI~~A~I~T~-g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al---~  319 (444)
                      ++.+.|+|.+ +|+||.++++..+|+++|+||..-..... ++...-.|.|...         ..++..+.|++..   .
T Consensus        23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~---------~~~~a~~~l~~~~~~l~   93 (167)
T 2re1_A           23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRG---------DYKQTLEILSERQDSIG   93 (167)
T ss_dssp             CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGG---------GHHHHHHHHHHSSTTTT
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEech---------HHHHHHHHHHHHHHHcC
Confidence            3568888884 99999999999999999999987554322 3444555777532         2233344454422   1


Q ss_pred             cC----CCCceEEEEEecC---CCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHH
Q 013389          320 RR----ASEGVRLELCMED---RQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKI  391 (444)
Q Consensus       320 rr----~~~~~~lev~~~D---RpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l  391 (444)
                      ..    ......+.|.+.+   +||+++++.++|.++|+||...  +|...  .=.|+|...+    ..+.++.|.++|
T Consensus        94 ~~~i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~i--stse~--~is~vv~~~d----~~~av~~Lh~~f  164 (167)
T 2re1_A           94 AASIDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMI--STSEI--KVSVLIDEKY----MELATRVLHKAF  164 (167)
T ss_dssp             CSEEEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEE--EECSS--EEEEEEEGGG----HHHHHHHHHHHT
T ss_pred             CceEEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEE--EcccC--EEEEEEeHHH----HHHHHHHHHHHh
Confidence            10    1124678999887   9999999999999999999984  34222  2334443211    014556666655

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.41  E-value=0.0018  Score=63.35  Aligned_cols=49  Identities=20%  Similarity=0.247  Sum_probs=41.7

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEE
Q 013389           34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSD--GRFFMDVFHVT   82 (444)
Q Consensus        34 ~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~--~g~~~dvF~V~   82 (444)
                      ...+++|.|+|||||++++++.|+++|+||.+++.+++  .|+|.-...+.
T Consensus        21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~   71 (302)
T 3o1l_A           21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIR   71 (302)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEe
Confidence            45689999999999999999999999999999999875  67765444444

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.38  E-value=0.0039  Score=60.55  Aligned_cols=112  Identities=9%  Similarity=0.043  Sum_probs=69.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhcc---CCC
Q 013389           35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIH---YGR  109 (444)
Q Consensus        35 ~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t--~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~---~~~  109 (444)
                      ..+++|.|+|||||+++++++|+++|+||.+++.++  ..|+|.-...+.-+.+ ...    .+.|+++|....   ...
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~-~~~----~~~L~~~f~~la~~~~m~   80 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAK-VIP----LASLRTGFGVIAAKFTMG   80 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSC-CCC----HHHHHHHHHHHHHHTTCE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCC-CCC----HHHHHHHHHHHHHHcCCE
Confidence            468999999999999999999999999999999974  5676654444543332 122    233444443221   110


Q ss_pred             C--CCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEe
Q 013389          110 S--NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT  151 (444)
Q Consensus       110 ~--~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T  151 (444)
                      -  ........|-|...-+-.-|..+-.....-.+++.=+-+.+
T Consensus        81 ~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Vis  124 (288)
T 3obi_A           81 WHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVS  124 (288)
T ss_dssp             EEEEETTSCEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEE
T ss_pred             EEeeccCCCcEEEEEEcCCCCCHHHHHHHHHCCCCCeEEEEEEc
Confidence            0  11122344555555555577777777776666655444444

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=97.37  E-value=0.00098  Score=60.09  Aligned_cols=109  Identities=14%  Similarity=0.173  Sum_probs=72.2

Q ss_pred             CCeEEEEE-EeCCCccHHHHHHHHHHhCCceEEEEEEEec---CCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCC
Q 013389           33 PTATLVKV-DSARRHGILLEAVQVLTDLNLLIKKAYISSD---GRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG  108 (444)
Q Consensus        33 ~~~t~V~v-~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~---~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~  108 (444)
                      .+.+.|+| ..+|+||.++++.+.|++.|+||.-...++.   +|-.-..|.|...+.     ++..+.|++ +.....+
T Consensus        13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d~-----~~a~~~l~~-~~~~~~~   86 (178)
T 2dtj_A           13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSDG-----RRAMEILKK-LQVQGNW   86 (178)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHHH-----HHHHHHHHT-TTTTTTC
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccccH-----HHHHHHHHH-HHHhcCC
Confidence            46788888 4699999999999999999999987665532   332212366554211     222222332 1111111


Q ss_pred             CC-CCCCCceEEEEEEc---CCcchHHHHHHHHHHCCCeEEEE
Q 013389          109 RS-NSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEA  147 (444)
Q Consensus       109 ~~-~~~~~~t~i~v~~~---DrpGLl~~i~~vL~~~~~~I~~A  147 (444)
                      .. ....+...|.|.|.   ++||.++++..+|++.|+||...
T Consensus        87 ~~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~i  129 (178)
T 2dtj_A           87 TNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI  129 (178)
T ss_dssp             SEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEE
T ss_pred             CeEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEE
Confidence            11 12345677889887   89999999999999999999873

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=97.28  E-value=0.0013  Score=58.43  Aligned_cols=105  Identities=10%  Similarity=0.111  Sum_probs=72.7

Q ss_pred             CCeEEEEEEe-CCCccHHHHHHHHHHhCCceEEEEEEEe---cCCeEEEEEEEEeCCCCCCCchHHHHHHHH---Hhhhc
Q 013389           33 PTATLVKVDS-ARRHGILLEAVQVLTDLNLLIKKAYISS---DGRFFMDVFHVTDLNGNKLTDESVISYIEQ---SLETI  105 (444)
Q Consensus        33 ~~~t~V~v~~-~dr~Gll~~i~~vL~~~~l~I~~A~i~t---~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~---aL~~~  105 (444)
                      .+.+.|++.+ +|+||.++++.++|++.|+||.-...+.   +.|..-..|.|...+.     ++..+.|++   .+...
T Consensus        14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~-----~~a~~~L~~~~~~~~~~   88 (167)
T 2dt9_A           14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFA-----QEALEALEPVLAEIGGE   88 (167)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGH-----HHHHHHHHHHHHHHCCE
T ss_pred             CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHH-----HHHHHHHHHHHHHhCCc
Confidence            4677888876 8999999999999999999998765542   2443334576654322     223333333   23211


Q ss_pred             cCCCCCCCCCceEEEEEEcC---CcchHHHHHHHHHHCCCeEEE
Q 013389          106 HYGRSNSFNGLTALELTGTD---RVGLLSEVFAVLADLQCSVVE  146 (444)
Q Consensus       106 ~~~~~~~~~~~t~i~v~~~D---rpGLl~~i~~vL~~~~~~I~~  146 (444)
                      .    ....+...+.|.|.+   +||.++++..+|++.|+||..
T Consensus        89 v----~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~  128 (167)
T 2dt9_A           89 A----ILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEM  128 (167)
T ss_dssp             E----EEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCE
T ss_pred             E----EEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEE
Confidence            0    123456678999987   999999999999999999954

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.28  E-value=0.0051  Score=59.67  Aligned_cols=101  Identities=12%  Similarity=0.096  Sum_probs=63.6

Q ss_pred             eEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec--CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhc-----
Q 013389          247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA--GERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVG-----  319 (444)
Q Consensus       247 ~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~--g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~-----  319 (444)
                      ..+|+|.|+||||+.++|+..|+++|+||.+.+-++.  .+++.-...+.-+.  ..    ..+.|++.|.+.-+     
T Consensus         8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~--~~----~~~~L~~~f~~la~~l~m~   81 (286)
T 3n0v_A            8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD--DF----DEAGFRAGLAERSEAFGMA   81 (286)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS--SC----CHHHHHHHHHHHHGGGTCE
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC--CC----CHHHHHHHHHHHHHHcCCE
Confidence            4689999999999999999999999999999999863  45555433333222  11    25667777654211     


Q ss_pred             ---cCCCCceEEEEEecCCCchHHHHHHHHHHCCceE
Q 013389          320 ---RRASEGVRLELCMEDRQGLLADVTRTFRENGLNV  353 (444)
Q Consensus       320 ---rr~~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I  353 (444)
                         +...+...|-|..--+---|.++-....+..++.
T Consensus        82 ~~l~~~~~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~  118 (286)
T 3n0v_A           82 FELTAPNHRPKVVIMVSKADHCLNDLLYRQRIGQLGM  118 (286)
T ss_dssp             EEEECTTCCCEEEEEESSCCHHHHHHHHHHHTTSSCC
T ss_pred             EEeecCCCCcEEEEEEeCCCCCHHHHHHHHHCCCCCc
Confidence               1122233444444444446666666666554543

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.28  E-value=0.0045  Score=60.10  Aligned_cols=112  Identities=8%  Similarity=-0.036  Sum_probs=64.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhcc---CC
Q 013389           34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIH---YG  108 (444)
Q Consensus        34 ~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t--~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~---~~  108 (444)
                      ...+++|.|+|||||++++++.|+++|+||.+++.++  ..|+|.-...+..+.  ...    .+.|++++....   ..
T Consensus         7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~--~~~----~~~L~~~f~~la~~l~m   80 (286)
T 3n0v_A            7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD--DFD----EAGFRAGLAERSEAFGM   80 (286)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS--SCC----HHHHHHHHHHHHGGGTC
T ss_pred             CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC--CCC----HHHHHHHHHHHHHHcCC
Confidence            3478999999999999999999999999999999985  567665344443322  122    234444443221   11


Q ss_pred             C-C-CCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEe
Q 013389          109 R-S-NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT  151 (444)
Q Consensus       109 ~-~-~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T  151 (444)
                      . . ........|-|.+.-+-.-|..+-.....-.+++.=+-+.+
T Consensus        81 ~~~l~~~~~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~~i~~Vis  125 (286)
T 3n0v_A           81 AFELTAPNHRPKVVIMVSKADHCLNDLLYRQRIGQLGMDVVAVVS  125 (286)
T ss_dssp             EEEEECTTCCCEEEEEESSCCHHHHHHHHHHHTTSSCCEEEEEEE
T ss_pred             EEEeecCCCCcEEEEEEeCCCCCHHHHHHHHHCCCCCcEEEEEEe
Confidence            0 0 11111223444444344466666666655544443333443

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.26  E-value=0.0068  Score=58.86  Aligned_cols=107  Identities=14%  Similarity=0.189  Sum_probs=71.5

Q ss_pred             eEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec--CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH---hc--
Q 013389          247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA--GERAYLEFYIRHIDGTPISSEPERQRVIQCLEAA---VG--  319 (444)
Q Consensus       247 ~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~--g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~a---l~--  319 (444)
                      ..+|+|.|+||||+.++|+..|+++|+||.+.+-++.  .+++.-...+.-+.+ ..    ..+.|++.|...   +.  
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~-~~----~~~~L~~~f~~la~~~~m~   80 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAK-VI----PLASLRTGFGVIAAKFTMG   80 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSC-CC----CHHHHHHHHHHHHHHTTCE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCC-CC----CHHHHHHHHHHHHHHcCCE
Confidence            4689999999999999999999999999999998753  456554444432322 11    245666666432   21  


Q ss_pred             ---cCCCCceEEEEEecCCCchHHHHHHHHHHCCceEEEEEe
Q 013389          320 ---RRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEV  358 (444)
Q Consensus       320 ---rr~~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i  358 (444)
                         +...+...|-|..--+---|.++-...++..+++.-+-|
T Consensus        81 ~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~V  122 (288)
T 3obi_A           81 WHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAI  122 (288)
T ss_dssp             EEEEETTSCEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEE
T ss_pred             EEeeccCCCcEEEEEEcCCCCCHHHHHHHHHCCCCCeEEEEE
Confidence               112234556666666666888888888877776543433

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.25  E-value=0.0037  Score=60.72  Aligned_cols=114  Identities=10%  Similarity=-0.038  Sum_probs=65.3

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCC--C
Q 013389           34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG--R  109 (444)
Q Consensus        34 ~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t--~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~--~  109 (444)
                      ...++++.|+|||||++++++.|+++|+||.+++.++  ..|+|.-...+.. ++...  ..+.+.++. +......  +
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~-~~~~~--~~L~~~f~~-la~~~~m~~~   81 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEI-PVAGV--NDFNSAFGK-VVEKYNAEWW   81 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEC-CC-----CHHHHHHHH-HHGGGTCEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEc-CCCCH--HHHHHHHHH-HHHHcCCeeE
Confidence            4578999999999999999999999999999999974  5676653433332 22111  123333332 2222111  0


Q ss_pred             CCCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEe
Q 013389          110 SNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT  151 (444)
Q Consensus       110 ~~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T  151 (444)
                      -........|-|.+.-+-.-|..+-.....-.+++.=+-+.+
T Consensus        82 l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Vis  123 (287)
T 3nrb_A           82 FRPRTDRKKVVIMVSKFDHCLGDLLYRHRLGELDMEVVGIIS  123 (287)
T ss_dssp             EEETTCCCEEEEEECSCCHHHHHHHHHHHHTSSCCEEEEEEE
T ss_pred             eeccCCCcEEEEEEeCCCcCHHHHHHHHHCCCCCeEEEEEEe
Confidence            011111233444444444566677777666655544344444

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.24  E-value=0.0044  Score=60.55  Aligned_cols=101  Identities=15%  Similarity=0.202  Sum_probs=63.8

Q ss_pred             eEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec--CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH---hc--
Q 013389          247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA--GERAYLEFYIRHIDGTPISSEPERQRVIQCLEAA---VG--  319 (444)
Q Consensus       247 ~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~--g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~a---l~--  319 (444)
                      ..+++|.|+||||+.+.|+..|+++|+||.+++-++.  .+++.-...+.-+.+ ..    ..+.|++.|...   +.  
T Consensus        22 ~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~-~~----~~~~L~~~l~~la~~l~m~   96 (302)
T 3o1l_A           22 TFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTL-PF----DLDGFREAFTPIAEEFSMD   96 (302)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGS-SS----CHHHHHHHHHHHHHHHTCE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCC-CC----CHHHHHHHHHHHHHHhCCe
Confidence            3689999999999999999999999999999999875  466554443432221 11    245666666432   21  


Q ss_pred             ---cCCCCceEEEEEecCCCchHHHHHHHHHHCCce
Q 013389          320 ---RRASEGVRLELCMEDRQGLLADVTRTFRENGLN  352 (444)
Q Consensus       320 ---rr~~~~~~lev~~~DRpGLL~~Itr~l~e~gl~  352 (444)
                         +...+..++-|..--+-.-|.++-...++..++
T Consensus        97 ~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~  132 (302)
T 3o1l_A           97 WRITDSAQKKRVVLMASRESHCLADLLHRWHSDELD  132 (302)
T ss_dssp             EEEEETTSCCEEEEEECSCCHHHHHHHHHHHTTCSC
T ss_pred             eeecccCCCcEEEEEEeCCchhHHHHHHHHHCCCCC
Confidence               111223344444444445667777766665554

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.17  E-value=0.0072  Score=58.79  Aligned_cols=104  Identities=13%  Similarity=0.173  Sum_probs=64.0

Q ss_pred             eEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec--CCEEEEEEEEEeC-CCCCCCCHHHHHHHHHHHHHH---hc-
Q 013389          247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA--GERAYLEFYIRHI-DGTPISSEPERQRVIQCLEAA---VG-  319 (444)
Q Consensus       247 ~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~--g~~a~d~F~V~~~-~g~~l~~~~~~~~l~~~L~~a---l~-  319 (444)
                      ..++++.|+||||+.++|+..|+++|+||.+++-++.  .+++.-...+.-+ .+...    ..+.|++.|...   +. 
T Consensus        10 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~----~~~~L~~~f~~la~~~~m   85 (292)
T 3lou_A           10 QFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADAL----RVDALRREFEPIAERFRM   85 (292)
T ss_dssp             EEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----C----CHHHHHHHHHHHHHHHTC
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCC----CHHHHHHHHHHHHHhcCc
Confidence            4689999999999999999999999999999999863  4555433333222 01011    245666666432   21 


Q ss_pred             ----cCCCCceEEEEEecCCCchHHHHHHHHHHCCceEE
Q 013389          320 ----RRASEGVRLELCMEDRQGLLADVTRTFRENGLNVT  354 (444)
Q Consensus       320 ----rr~~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~  354 (444)
                          +...+...+-|..--+---|.++-...++..+++.
T Consensus        86 ~~~l~~~~~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~~  124 (292)
T 3lou_A           86 QWAIHDVAARPKVLIMVSKLEHCLADLLFRWKMGELKMD  124 (292)
T ss_dssp             EEEEEETTSCCEEEEEECSCCHHHHHHHHHHHHTSSCCE
T ss_pred             EEEeeccCCCCEEEEEEcCCCcCHHHHHHHHHcCCCCcE
Confidence                11222334444444444567777777766655433

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.12  E-value=0.0064  Score=59.13  Aligned_cols=49  Identities=8%  Similarity=0.057  Sum_probs=40.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEE
Q 013389           34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVT   82 (444)
Q Consensus        34 ~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t--~~g~~~dvF~V~   82 (444)
                      ...++++.|+|||||++++++.|+++|+||.+++.++  ..|+|.-...+.
T Consensus         9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~   59 (292)
T 3lou_A            9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFH   59 (292)
T ss_dssp             CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEE
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEE
Confidence            4578999999999999999999999999999999985  567665344443

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=97.09  E-value=0.0017  Score=57.77  Aligned_cols=64  Identities=17%  Similarity=0.235  Sum_probs=50.8

Q ss_pred             eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC--CeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHh
Q 013389          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN--GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL  188 (444)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~--~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL  188 (444)
                      ..|.|.+.|+||+|++|+++|+++|+||.+..+.+..  +...-+|.|..        +++.++.|.++|.++.
T Consensus         4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~--------d~~~leqI~kqL~Kl~   69 (164)
T 2f1f_A            4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG--------DEKVLEQIEKQLHKLV   69 (164)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES--------CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEec--------cHHHHHHHHHHHcCCC
Confidence            5789999999999999999999999999999887543  45555565542        3567788888888743

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.02  E-value=0.012  Score=57.19  Aligned_cols=102  Identities=13%  Similarity=0.183  Sum_probs=66.0

Q ss_pred             CeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec--CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhc----
Q 013389          246 SYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA--GERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVG----  319 (444)
Q Consensus       246 ~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~--g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~----  319 (444)
                      ...+|+|.|+||||+.++|+..|+++|+||.+++-++.  .+++.-...+. ..+  .    ..+.|++.|...-+    
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~-~~~--~----~~~~L~~~f~~la~~~~m   78 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVE-IPV--A----GVNDFNSAFGKVVEKYNA   78 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEE-CCC---------CHHHHHHHHHHGGGTC
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEE-cCC--C----CHHHHHHHHHHHHHHcCC
Confidence            35789999999999999999999999999999999753  45555333332 211  1    12356666644211    


Q ss_pred             ----cCCCCceEEEEEecCCCchHHHHHHHHHHCCceEE
Q 013389          320 ----RRASEGVRLELCMEDRQGLLADVTRTFRENGLNVT  354 (444)
Q Consensus       320 ----rr~~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~  354 (444)
                          +...+...+-|..--+---|.++-...++..+++.
T Consensus        79 ~~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~  117 (287)
T 3nrb_A           79 EWWFRPRTDRKKVVIMVSKFDHCLGDLLYRHRLGELDME  117 (287)
T ss_dssp             EEEEEETTCCCEEEEEECSCCHHHHHHHHHHHHTSSCCE
T ss_pred             eeEeeccCCCcEEEEEEeCCCcCHHHHHHHHHCCCCCeE
Confidence                11222345555555555678888888877766543

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=97.00  E-value=0.007  Score=54.39  Aligned_cols=132  Identities=15%  Similarity=0.164  Sum_probs=84.8

Q ss_pred             CCeEEEEEE-ccCCccHHHHHHHHHHhCCeeEEEEEEEec---CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc
Q 013389          245 RSYSVVNVQ-CKDRTKLLFDVVCTLTDMEYVVFHATINTA---GERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR  320 (444)
Q Consensus       245 ~~~tvv~V~-~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~---g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r  320 (444)
                      ++.+.|+|. .+|+||.++++...|++.|+||..-..++.   ++...-.|.+...         ..++..+.|++....
T Consensus        13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~---------d~~~a~~~l~~~~~~   83 (178)
T 2dtj_A           13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRS---------DGRRAMEILKKLQVQ   83 (178)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHH---------HHHHHHHHHHTTTTT
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccc---------cHHHHHHHHHHHHHh
Confidence            467788884 699999999999999999999987655443   2233334666532         233444445442111


Q ss_pred             ---C----CCCceEEEEEec---CCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHH
Q 013389          321 ---R----ASEGVRLELCME---DRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQK  390 (444)
Q Consensus       321 ---r----~~~~~~lev~~~---DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~  390 (444)
                         .    ......|.|.+.   ++||+++++.++|.+.|+||....  |..  ..-.|.|...+    ..+.++.|.++
T Consensus        84 ~~~~~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is--tSe--~~Is~vV~~~d----~~~Av~~Lh~~  155 (178)
T 2dtj_A           84 GNWTNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSE--IRISVLIREDD----LDAAARALHEQ  155 (178)
T ss_dssp             TTCSEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EET--TEEEEEEEGGG----HHHHHHHHHHH
T ss_pred             cCCCeEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE--cCC--CeEEEEEeHHH----HHHHHHHHHHH
Confidence               1    112356778876   899999999999999999998853  322  23345552111    02456677777


Q ss_pred             Hhh
Q 013389          391 IGL  393 (444)
Q Consensus       391 l~~  393 (444)
                      |..
T Consensus       156 F~l  158 (178)
T 2dtj_A          156 FQL  158 (178)
T ss_dssp             HTC
T ss_pred             Hcc
Confidence            653

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=96.96  E-value=0.0017  Score=57.86  Aligned_cols=68  Identities=18%  Similarity=0.289  Sum_probs=52.4

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC--ceEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccccc
Q 013389          326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER--DEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKE  400 (444)
Q Consensus       326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g--~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~~~  400 (444)
                      +.|.|...||||+|++|+.+|+++|+||.++.+.+..  +...-+|.+. .  .   +..+++|.++|.+. ..|.+
T Consensus         4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~-~--d---~~~leqI~kqL~Kl-~dV~~   73 (164)
T 2f1f_A            4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-G--D---EKVLEQIEKQLHKL-VDVLR   73 (164)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-S--C---HHHHHHHHHHHHHS-TTEEE
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe-c--c---HHHHHHHHHHHcCC-CCEEE
Confidence            5789999999999999999999999999999997443  3455555554 2  2   57889999998883 34443

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=96.94  E-value=0.0039  Score=55.38  Aligned_cols=135  Identities=13%  Similarity=0.128  Sum_probs=83.4

Q ss_pred             CCCeEEEEEEc-cCCccHHHHHHHHHHhCCeeEEEEEEEec---CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhc
Q 013389          244 DRSYSVVNVQC-KDRTKLLFDVVCTLTDMEYVVFHATINTA---GERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVG  319 (444)
Q Consensus       244 ~~~~tvv~V~~-~DRpGLL~~i~~~L~~~~~nI~~A~I~T~---g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~  319 (444)
                      .++.+.|+|.+ +|+||.++++..+|++.|+||..-.....   .+...-.|.|...+      .++..++-+.+...+.
T Consensus        13 ~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d------~~~a~~~L~~~~~~~~   86 (167)
T 2dt9_A           13 DLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDF------AQEALEALEPVLAEIG   86 (167)
T ss_dssp             ECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGG------HHHHHHHHHHHHHHHC
T ss_pred             eCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHH------HHHHHHHHHHHHHHhC
Confidence            34678888876 89999999999999999999987433221   23455567776432      1122222222333332


Q ss_pred             c---CCCCceEEEEEecC---CCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHh
Q 013389          320 R---RASEGVRLELCMED---RQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIG  392 (444)
Q Consensus       320 r---r~~~~~~lev~~~D---RpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~  392 (444)
                      -   -.+.-..+.|.+.+   +||+++.+.++|.+.|+||....  |- +. .=.|.|...+    .++.+..|.+++.
T Consensus        87 ~~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~S-e~-~is~vv~~~d----~~~Av~~Lh~~f~  157 (167)
T 2dt9_A           87 GEAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA--TS-EV-RISVIIPAEY----AEAALRAVHQAFE  157 (167)
T ss_dssp             CEEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE--EC-SS-EEEEEEEGGG----HHHHHHHHHHHTC
T ss_pred             CcEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE--cc-CC-EEEEEEeHHH----HHHHHHHHHHHHc
Confidence            1   01223568888876   99999999999999999995543  33 22 3345453221    0244555655543

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.88  E-value=0.0033  Score=56.03  Aligned_cols=64  Identities=13%  Similarity=0.188  Sum_probs=50.6

Q ss_pred             eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC--CeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHh
Q 013389          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN--GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL  188 (444)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~--~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL  188 (444)
                      ..|.|...|+||+|++|+++|+++|+||.+..+....  +...-+|.|..        ++..++.|.++|.++.
T Consensus         5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~--------d~~~leql~kQL~Kl~   70 (165)
T 2pc6_A            5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG--------PDEIVEQITKQLNKLI   70 (165)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE--------CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec--------cHHHHHHHHHHhcCCC
Confidence            5789999999999999999999999999998887543  55555566653        2467788888888743

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=96.80  E-value=0.053  Score=57.89  Aligned_cols=209  Identities=14%  Similarity=0.138  Sum_probs=129.4

Q ss_pred             CCeEEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCC-
Q 013389           33 PTATLVKVDSA---RRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG-  108 (444)
Q Consensus        33 ~~~t~V~v~~~---dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~-  108 (444)
                      .+...|++.+.   ++||+.+++.++|++.|+||.-.. ++.-  - ..|.|...+.     ++.++.|++.+...... 
T Consensus       353 ~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is-tSe~--~-Is~vI~~~d~-----~~Av~aLh~~f~~~~t~~  423 (600)
T 3l76_A          353 KGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS-TSEV--K-VSCVIDQRDA-----DRAIAALSNAFGVTLSPP  423 (600)
T ss_dssp             CSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE-ECSS--E-EEEEEEGGGH-----HHHHHHHHHHTTCCBCCC
T ss_pred             CCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe-cCCC--E-EEEEEcHHHH-----HHHHHHHHHhhcccCCCc
Confidence            46889999987   789999999999999999997765 3322  2 2355554322     34666777776543110 


Q ss_pred             ---------C--C--CCCCCceEEEEE-EcCCcchHHHHHHHHHHCCCeEEEEEEEee----CCe-EEE-EEEEEcCCCC
Q 013389          109 ---------R--S--NSFNGLTALELT-GTDRVGLLSEVFAVLADLQCSVVEAKVWTH----NGR-IAS-LIYVKDCNSG  168 (444)
Q Consensus       109 ---------~--~--~~~~~~t~i~v~-~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~----~~~-~~d-vf~V~d~~~g  168 (444)
                               +  +  ....+...|.|. .+|+||..++|...|+++|+||.--.....    +|. ..+ .|.|..    
T Consensus       424 ~~~~~~~~~~~v~Gia~~~~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~----  499 (600)
T 3l76_A          424 KNQTDTSHLPAVRGVALDQDQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAE----  499 (600)
T ss_dssp             CCCCC---CCSCCEEEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEH----
T ss_pred             cccccccccCceEEEEeeCCEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeH----
Confidence                     0  1  223455677775 589999999999999999999964333221    232 334 355543    


Q ss_pred             CCCCChHHHHHHHHHHHHHhcCCCcccccchhhcccccchhHHhhhhhccccccccccccCCCCCCCEEEEEecCCCCeE
Q 013389          169 SPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYS  248 (444)
Q Consensus       169 ~~i~~~~r~~~i~~~L~~vL~~~~~~~~~~~~~~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t  248 (444)
                            +.+....+.|.+ +..+..                            +            -.|.++    .+..
T Consensus       500 ------~d~~~a~~~l~~-~~~~~~----------------------------~------------~~v~~~----~~~a  528 (600)
T 3l76_A          500 ------GDSSQAEAILQP-LIKDWL----------------------------D------------AAIVVN----KAIA  528 (600)
T ss_dssp             ------HHHHHHHHHHHH-HTTTST----------------------------T------------CEEEEE----CCEE
T ss_pred             ------HHHHHHHHHHHH-HHHhcC----------------------------C------------ceEEEe----CCeE
Confidence                  122333333433 111110                            0            113333    3577


Q ss_pred             EEEEEc---cCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHh
Q 013389          249 VVNVQC---KDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAV  318 (444)
Q Consensus       249 vv~V~~---~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al  318 (444)
                      .|.|.+   +.+||.-+++..+|.+.|+||..-.  |..  .--.+.|...         ..++..++|.+++
T Consensus       529 kVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis--tSE--i~Is~vV~~~---------~~~~Av~alh~~F  588 (600)
T 3l76_A          529 KVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA--TSE--IKISCVVPQD---------RGVDALKAAHSAF  588 (600)
T ss_dssp             EEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE--ECS--SEEEEEEEGG---------GHHHHHHHHHHHT
T ss_pred             EEEEECcccccCccHHHHHHHHHHHCCCceEEEE--cCC--ceEEEEEeHH---------HHHHHHHHHHHHh
Confidence            888886   7999999999999999999997643  322  2233556532         3445555666554

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.78  E-value=0.0039  Score=55.52  Aligned_cols=68  Identities=21%  Similarity=0.348  Sum_probs=52.4

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC--ceEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccccc
Q 013389          326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER--DEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKE  400 (444)
Q Consensus       326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g--~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~~~  400 (444)
                      ..|.|...||||+|++|+.+|+++|+||.++.+.+..  +...=+|.|.   |.   +..+++|.+++.+. ..|.+
T Consensus         5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~---~d---~~~leql~kQL~Kl-~dV~~   74 (165)
T 2pc6_A            5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN---GP---DEIVEQITKQLNKL-IEVVK   74 (165)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE---EC---HHHHHHHHHHHHHS-TTEEE
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe---cc---HHHHHHHHHHhcCC-CCEEE
Confidence            5789999999999999999999999999999996433  3455555554   11   57889999998883 34443

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=96.72  E-value=0.0061  Score=53.83  Aligned_cols=59  Identities=20%  Similarity=0.305  Sum_probs=45.1

Q ss_pred             EEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013389          327 RLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGL  393 (444)
Q Consensus       327 ~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~  393 (444)
                      .|+|.+.||+|||++|+++|.+.++||..+++.+.|.     +|+.-.   ..+...+..|.+++..
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g~-----i~~~~~---~~~~~~~~~L~~~l~~   60 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGR-----IYLNFA---ELEFESFSSLMAEIRR   60 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTTE-----EEEEEC---CCCHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCCE-----EEEEEE---eCCHHHHHHHHHHHHc
Confidence            5899999999999999999999999999999987742     556433   1223455666666555

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.60  E-value=0.0074  Score=54.91  Aligned_cols=63  Identities=17%  Similarity=0.335  Sum_probs=49.8

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEee-cCC-ceEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013389          325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVS-TER-DEALNIFYVTDEMGNPADPKIIEAVRQKIGL  393 (444)
Q Consensus       325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~-T~g-~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~  393 (444)
                      ...|.|...|+||.|++|+.+|+++|+||.+..+. |.. +...=++.|...      +..+++|.+++.+
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~------e~~ieqL~kQL~K   93 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD------DKTIEQIEKQAYK   93 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC------TTHHHHHHHHHTT
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC------HHHHHHHHHHhcC
Confidence            46799999999999999999999999999999986 444 233334445322      4678999999988

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=96.59  E-value=0.009  Score=53.94  Aligned_cols=110  Identities=12%  Similarity=0.092  Sum_probs=72.7

Q ss_pred             CCeEEEEE-EeCCCccHHHHHHHHHHhCCceEEEEEEE-ec--CCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCC
Q 013389           33 PTATLVKV-DSARRHGILLEAVQVLTDLNLLIKKAYIS-SD--GRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG  108 (444)
Q Consensus        33 ~~~t~V~v-~~~dr~Gll~~i~~vL~~~~l~I~~A~i~-t~--~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~  108 (444)
                      .+.+.|+| .-+|+||.++++.+.|++.|+||.--... +.  .|..-..|.|...+.     +...+.|++ +.....+
T Consensus        14 ~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~-----~~a~~~L~~-~~~el~~   87 (181)
T 3s1t_A           14 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVG-----PAAVEKLDS-LRNEIGF   87 (181)
T ss_dssp             CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTH-----HHHHHHHHH-THHHHCC
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHH-----HHHHHHHHH-HHHhcCc
Confidence            45666665 35799999999999999999999765543 22  565445677765322     222222332 1111000


Q ss_pred             CC-CCCCCceEEEEEEc---CCcchHHHHHHHHHHCCCeEEEEE
Q 013389          109 RS-NSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAK  148 (444)
Q Consensus       109 ~~-~~~~~~t~i~v~~~---DrpGLl~~i~~vL~~~~~~I~~A~  148 (444)
                      .. ....+...|.|.|.   +.||+.+++..+|++.|+||....
T Consensus        88 ~~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is  131 (181)
T 3s1t_A           88 SQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  131 (181)
T ss_dssp             SEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             ceEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence            00 12245678888887   799999999999999999998755

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.29  E-value=0.012  Score=53.45  Aligned_cols=66  Identities=17%  Similarity=0.246  Sum_probs=50.0

Q ss_pred             ceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEE-eeC-CeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhc
Q 013389          116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVW-THN-GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK  189 (444)
Q Consensus       116 ~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~-T~~-~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~  189 (444)
                      ...|.|...|+||.|++|+++|+.+|+||.+..+. |.+ +...-++.|...        +..++.|.++|.++..
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~--------e~~ieqL~kQL~KLid   96 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD--------DKTIEQIEKQAYKLVE   96 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC--------TTHHHHHHHHHTTSTT
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC--------HHHHHHHHHHhcCcCc
Confidence            46899999999999999999999999999998876 444 444455566532        2345778888776544

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=96.13  E-value=0.053  Score=55.29  Aligned_cols=107  Identities=14%  Similarity=0.168  Sum_probs=70.5

Q ss_pred             CeEEEEEE-eCCCccHHHHHHHHHHhCCceEEEEEEEe-c--CCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCC
Q 013389           34 TATLVKVD-SARRHGILLEAVQVLTDLNLLIKKAYISS-D--GRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGR  109 (444)
Q Consensus        34 ~~t~V~v~-~~dr~Gll~~i~~vL~~~~l~I~~A~i~t-~--~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~  109 (444)
                      +.+.|+|. .+|++|.++++.+.|++.|+||.--.+.+ .  .|..-..|.|...+.     ++..+.+++ +.....+.
T Consensus       263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~-----~~a~~~l~~-~~~~~~~~  336 (421)
T 3ab4_A          263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDG-----RRAMEILKK-LQVQGNWT  336 (421)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTH-----HHHHHHHHH-HHTTTTCS
T ss_pred             CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhH-----HHHHHHHHH-HHHHcCCc
Confidence            34566676 58999999999999999999998765543 2  453334566654211     223333443 21111100


Q ss_pred             C-CCCCCceEEEEEEc---CCcchHHHHHHHHHHCCCeEEE
Q 013389          110 S-NSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVE  146 (444)
Q Consensus       110 ~-~~~~~~t~i~v~~~---DrpGLl~~i~~vL~~~~~~I~~  146 (444)
                      + ....+...+.|.|.   +.||.++++..+|++.|+||..
T Consensus       337 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~  377 (421)
T 3ab4_A          337 NVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIEL  377 (421)
T ss_dssp             EEEEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCE
T ss_pred             eEEEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEE
Confidence            1 12234566888886   7999999999999999999983

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=95.92  E-value=0.03  Score=49.25  Aligned_cols=59  Identities=24%  Similarity=0.328  Sum_probs=45.3

Q ss_pred             EEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389          118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (444)
Q Consensus       118 ~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~  186 (444)
                      .|+|.+.||+||+++|+.+|+.+++||..+.+.+. |.    +++.-+  .   .+.+.+..+...+..
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~-g~----i~~~~~--~---~~~~~~~~L~~~l~~   60 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-GR----IYLNFA--E---LEFESFSSLMAEIRR   60 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT-TE----EEEEEC--C---CCHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC-CE----EEEEEE--e---CCHHHHHHHHHHHHc
Confidence            58899999999999999999999999999999765 33    455442  1   134556667766665

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=95.73  E-value=0.013  Score=54.10  Aligned_cols=38  Identities=29%  Similarity=0.334  Sum_probs=30.9

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC
Q 013389          325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER  362 (444)
Q Consensus       325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g  362 (444)
                      ...|++.+.||||+|++|+++|+++++||...+..+..
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~   41 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIK   41 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECC
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccc
Confidence            35789999999999999999999999999999998864

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=95.66  E-value=0.098  Score=47.02  Aligned_cols=134  Identities=16%  Similarity=0.153  Sum_probs=82.2

Q ss_pred             CCeEEEEEE-ccCCccHHHHHHHHHHhCCeeEEEEEEE-ec--CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc
Q 013389          245 RSYSVVNVQ-CKDRTKLLFDVVCTLTDMEYVVFHATIN-TA--GERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR  320 (444)
Q Consensus       245 ~~~tvv~V~-~~DRpGLL~~i~~~L~~~~~nI~~A~I~-T~--g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r  320 (444)
                      ++.+.|+|. .+|+||.+++|..+|++.|+||..-.-. +.  .+...-.|.|...+      .+...++.+.+...+.-
T Consensus        14 ~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~------~~~a~~~L~~~~~el~~   87 (181)
T 3s1t_A           14 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDV------GPAAVEKLDSLRNEIGF   87 (181)
T ss_dssp             CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTT------HHHHHHHHHHTHHHHCC
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhH------HHHHHHHHHHHHHhcCc
Confidence            355666664 5899999999999999999999754332 22  34556678786432      11222222223332311


Q ss_pred             ---C-CCCceEEEEEec---CCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHh
Q 013389          321 ---R-ASEGVRLELCME---DRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIG  392 (444)
Q Consensus       321 ---r-~~~~~~lev~~~---DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~  392 (444)
                         . ...-..+.|.+.   ++||+.+.+.++|.+.|+||.....+    ...=.|.|...+    .++.+..|.++|.
T Consensus        88 ~~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~IstS----ei~Is~vV~~~d----~~~Av~aLH~~f~  158 (181)
T 3s1t_A           88 SQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTS----EIRISVLCRDTE----LDKAVVALHEAFG  158 (181)
T ss_dssp             SEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEE----TTEEEEEEEGGG----HHHHHHHHHHHHT
T ss_pred             ceEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEEcC----CCEEEEEEeHHH----HHHHHHHHHHHHc
Confidence               0 122456777766   89999999999999999999887722    222234453221    1245566666654

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=95.52  E-value=0.096  Score=47.97  Aligned_cols=110  Identities=12%  Similarity=0.086  Sum_probs=71.2

Q ss_pred             CCeEEEEEE-eCCCccHHHHHHHHHHhCCceEEEEEEEe---cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCC
Q 013389           33 PTATLVKVD-SARRHGILLEAVQVLTDLNLLIKKAYISS---DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG  108 (444)
Q Consensus        33 ~~~t~V~v~-~~dr~Gll~~i~~vL~~~~l~I~~A~i~t---~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~  108 (444)
                      .+.+.|++. -+|+||+.+++.+.|++.|+||----.+.   .++..-..|.+...+.     +...+.++ .+.....+
T Consensus        33 ~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d~-----~~~~~~l~-~~~~~~~~  106 (200)
T 4go7_X           33 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVG-----PAAVEKLD-SLRNEIGF  106 (200)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGGH-----HHHHHHHH-TTHHHHCC
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhhH-----HHHHHHHH-HHHhhhce
Confidence            457777775 48999999999999999999987654432   3455555677764322     11222222 22211110


Q ss_pred             CC-CCCCCceEEEEEEc---CCcchHHHHHHHHHHCCCeEEEEE
Q 013389          109 RS-NSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAK  148 (444)
Q Consensus       109 ~~-~~~~~~t~i~v~~~---DrpGLl~~i~~vL~~~~~~I~~A~  148 (444)
                      .. ....+...|.|.|.   ..||+.+++..+|++.|+||.--.
T Consensus       107 ~~v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIs  150 (200)
T 4go7_X          107 SQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  150 (200)
T ss_dssp             SEEEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             eeEEEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEE
Confidence            01 12234567777765   689999999999999999998653

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=95.19  E-value=0.18  Score=51.24  Aligned_cols=134  Identities=13%  Similarity=0.124  Sum_probs=82.9

Q ss_pred             CCeEEEEEE-ccCCccHHHHHHHHHHhCCeeEEEEEEEec---CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc
Q 013389          245 RSYSVVNVQ-CKDRTKLLFDVVCTLTDMEYVVFHATINTA---GERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR  320 (444)
Q Consensus       245 ~~~tvv~V~-~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~---g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r  320 (444)
                      ++.+.|+|. .+|+||.++++...|++.|+||..-...|.   .+...-.|.|...      +..+..++.+.+...+..
T Consensus       262 ~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~------~~~~a~~~l~~~~~~~~~  335 (421)
T 3ab4_A          262 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRS------DGRRAMEILKKLQVQGNW  335 (421)
T ss_dssp             CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETT------THHHHHHHHHHHHTTTTC
T ss_pred             CCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEech------hHHHHHHHHHHHHHHcCC
Confidence            466788888 699999999999999999999987654443   2344556777532      111222222223222221


Q ss_pred             C----CCCceEEEEEec---CCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHh
Q 013389          321 R----ASEGVRLELCME---DRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIG  392 (444)
Q Consensus       321 r----~~~~~~lev~~~---DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~  392 (444)
                      .    ...-..+.|.+.   ++||+++.+.++|.+.|+||....  |-.  ..=.|.|...+    .++.+..|.++|.
T Consensus       336 ~~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~Se--~~is~vV~~~d----~~~Av~~Lh~~f~  406 (421)
T 3ab4_A          336 TNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSE--IRISVLIREDD----LDAAARALHEQFQ  406 (421)
T ss_dssp             SEEEEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEE--EET--TEEEEEEEGGG----HHHHHHHHHHHTT
T ss_pred             ceEEEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEE--cCC--CeEEEEEeHHH----HHHHHHHHHHHHh
Confidence            0    112345777775   799999999999999999999553  322  22234443211    1245566666664

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=95.01  E-value=0.11  Score=47.58  Aligned_cols=136  Identities=17%  Similarity=0.177  Sum_probs=83.2

Q ss_pred             CCCeEEEEEE-ccCCccHHHHHHHHHHhCCeeEEEEEEEec---CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhc
Q 013389          244 DRSYSVVNVQ-CKDRTKLLFDVVCTLTDMEYVVFHATINTA---GERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVG  319 (444)
Q Consensus       244 ~~~~tvv~V~-~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~---g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~  319 (444)
                      +++.+.|+|. .+|+||+.++|..+|++.|+||-.-.-...   .+.....|.+...+      ..+...+.+.+...+.
T Consensus        32 ~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d------~~~~~~~l~~~~~~~~  105 (200)
T 4go7_X           32 DRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDV------GPAAVEKLDSLRNEIG  105 (200)
T ss_dssp             ECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGG------HHHHHHHHHTTHHHHC
T ss_pred             cCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhh------HHHHHHHHHHHHhhhc
Confidence            3467788886 589999999999999999999976432221   23555567765321      1122222233333332


Q ss_pred             cC----CCCceEEEEEe---cCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHh
Q 013389          320 RR----ASEGVRLELCM---EDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIG  392 (444)
Q Consensus       320 rr----~~~~~~lev~~---~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~  392 (444)
                      ..    .+.-.+|.|.+   ..+||+.+.+-++|.+.|+||....  |- | ..=.|.|...+    ..+.+..|-++|.
T Consensus       106 ~~~v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIs--tS-E-i~IS~vV~~~d----~~~Av~aLH~~F~  177 (200)
T 4go7_X          106 FSQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TS-E-IRISVLCRDTE----LDKAVVALHEAFG  177 (200)
T ss_dssp             CSEEEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEE--EC-S-SEEEEEEEGGG----HHHHHHHHHHHHT
T ss_pred             eeeEEEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEE--cc-C-CEEEEEEeHHH----HHHHHHHHHHHhC
Confidence            11    12234555554   5789999999999999999998875  21 1 22224443221    1256777777775


Q ss_pred             h
Q 013389          393 L  393 (444)
Q Consensus       393 ~  393 (444)
                      -
T Consensus       178 L  178 (200)
T 4go7_X          178 L  178 (200)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=94.94  E-value=0.032  Score=51.53  Aligned_cols=38  Identities=16%  Similarity=0.392  Sum_probs=31.2

Q ss_pred             ceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC
Q 013389          116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN  153 (444)
Q Consensus       116 ~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~  153 (444)
                      ...|.|.+.||||+|++|+.+|+++++||...+..+..
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~   41 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIK   41 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECC
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccc
Confidence            46899999999999999999999999999999998853

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=93.45  E-value=0.18  Score=48.61  Aligned_cols=117  Identities=19%  Similarity=0.268  Sum_probs=72.3

Q ss_pred             HhCCeeEEEEEEEecC-CEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccC-CCCceEEEEEecCCCchHHHHHHHH
Q 013389          269 TDMEYVVFHATINTAG-ERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRR-ASEGVRLELCMEDRQGLLADVTRTF  346 (444)
Q Consensus       269 ~~~~~nI~~A~I~T~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr-~~~~~~lev~~~DRpGLL~~Itr~l  346 (444)
                      ..+|+.|....|.... +...  |+|......+..+.         +.  ...+ ....+.|-+..+|+||-|+++-..|
T Consensus       155 ~~ygL~il~~~I~D~~~N~TR--F~vl~~~~~~~~~~---------~~--~~~~~~~~ktsl~f~~~~~pGaL~~~L~~F  221 (283)
T 2qmx_A          155 ELYGLDILKENLADEEWNITR--FFCIAHENNPDISH---------LK--VRPDVARQKTSIVFALPNEQGSLFRALATF  221 (283)
T ss_dssp             HHTTCEEEESSCSSCCCCEEE--EEEEEETTCCCCTT---------SS--SCCEEEEEEEEEEEEEECCTTHHHHHHHHH
T ss_pred             HHcCCceecccCcCCCCCeee--EEEEecCccccccc---------cc--cCCCCCCceEEEEEEcCCCCchHHHHHHHH
Confidence            3468888877775543 3444  66665433210000         00  0000 0124556666689999999999999


Q ss_pred             HHCCceEEEEEeecCC-ceEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccccc
Q 013389          347 RENGLNVTRAEVSTER-DEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKE  400 (444)
Q Consensus       347 ~e~gl~I~~A~i~T~g-~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~~~  400 (444)
                      +.+|||+++.+..-.. ..-.=.||| |.+|..-+ ..++..-++|....-.+|-
T Consensus       222 a~~gINLtkIESRP~~~~~~~Y~Ffv-D~eg~~~d-~~v~~aL~~L~~~~~~~ki  274 (283)
T 2qmx_A          222 ALRGIDLTKIESRPSRKKAFEYLFYA-DFIGHRED-QNVHNALENLREFATMVKV  274 (283)
T ss_dssp             HTTTCCEEEEEEEECSSSTTEEEEEE-EEESCTTS-HHHHHHHHHHHTTCSEEEE
T ss_pred             HHcCCCeeEEEeeEcCCCCcceEEEE-EEecCCCc-HHHHHHHHHHHHhcCeEEE
Confidence            9999999999997554 447778888 77787654 4444444555554444543

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=92.74  E-value=0.21  Score=50.64  Aligned_cols=47  Identities=26%  Similarity=0.449  Sum_probs=42.1

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEE
Q 013389          325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYV  371 (444)
Q Consensus       325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV  371 (444)
                      ...|-+.-.|+||.+..|+.+|.++|+||....+.+.|+.+.-++-+
T Consensus       331 ~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidv  377 (404)
T 1sc6_A          331 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI  377 (404)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred             cceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEc
Confidence            35788889999999999999999999999999999988888777766

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=91.99  E-value=0.36  Score=46.11  Aligned_cols=104  Identities=18%  Similarity=0.223  Sum_probs=69.1

Q ss_pred             HhCCeeEEEEEEEecC-CEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEe---cCCCchHHHHHH
Q 013389          269 TDMEYVVFHATINTAG-ERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVRLELCM---EDRQGLLADVTR  344 (444)
Q Consensus       269 ~~~~~nI~~A~I~T~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr~~~~~~lev~~---~DRpGLL~~Itr  344 (444)
                      ..+|+.|....|.... +...  |+|..... +                   .. ...+.|-+..   .|+||-|+++-.
T Consensus       152 ~~ygL~il~~~I~D~~~N~TR--F~vl~~~~-~-------------------~~-~~ktsl~f~~~~~~~~pGaL~~~L~  208 (267)
T 2qmw_A          152 EAYGFTPIDTHIEDYPHNVTR--FLVIKNQQ-Q-------------------FD-QNATSLMFLITPMHDKPGLLASVLN  208 (267)
T ss_dssp             GGGTCCEEEECCCSCSCCEEE--EEEEESCC-C-------------------CC-SSCSEEEEEEEESSCCTTHHHHHHH
T ss_pred             HHCCCcEeeccccCCCCCceE--EEEEecCC-C-------------------CC-CCeEEEEEEcCCCCCCcChHHHHHH
Confidence            3458889888886643 4444  77765422 1                   11 2345666777   899999999999


Q ss_pred             HHHHCCceEEEEEeecCC-ceEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccc
Q 013389          345 TFRENGLNVTRAEVSTER-DEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKV  398 (444)
Q Consensus       345 ~l~e~gl~I~~A~i~T~g-~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~  398 (444)
                      .|+.+|||+++.+..-.. ..-.=.||| |.+ .. ++..+++.-++|......+
T Consensus       209 ~Fa~~gINLtkIESRP~~~~~~~Y~Ffi-D~e-~~-~d~~v~~aL~~L~~~~~~~  260 (267)
T 2qmw_A          209 TFALFNINLSWIESRPLKTQLGMYRFFV-QAD-SA-ITTDIKKVIAILETLDFKV  260 (267)
T ss_dssp             HHHTTTCCEEEEEEEECSSSTTCEEEEE-EES-CC-SCHHHHHHHHHHHHTTEEE
T ss_pred             HHHHcCCCeeEEEEeecCCCCccEEEEE-EEe-cC-CcHHHHHHHHHHHHhcCeE
Confidence            999999999999997544 447778888 565 44 3344444445554433333

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=91.95  E-value=0.73  Score=45.31  Aligned_cols=118  Identities=16%  Similarity=0.121  Sum_probs=69.5

Q ss_pred             HhCCeeEEEEEEEecC-CEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEec--CCCchHHHHHHH
Q 013389          269 TDMEYVVFHATINTAG-ERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVRLELCME--DRQGLLADVTRT  345 (444)
Q Consensus       269 ~~~~~nI~~A~I~T~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr~~~~~~lev~~~--DRpGLL~~Itr~  345 (444)
                      ..+|+.|....|.... +...  |+|.....       ....+..   ..-.......+.+-+...  |+||-|+++-..
T Consensus       161 elYgL~iLa~~I~D~~~N~TR--Flvl~~~~-------~~~~~~~---~~~~~~~~~kts~i~~~~~~~~pGaL~~~L~~  228 (329)
T 3luy_A          161 ELYDITRIGTAIQDYQGAATD--FLVLSPRA-------EVARLLA---KPRAEANVEYESVLTLIPLVTGPGVLANLLDV  228 (329)
T ss_dssp             HHSSEEEEESSCCSCSCCEEE--EEEEECHH-------HHHHHTH---HHHHTTCCCEEEEEEEECSCCSTTHHHHHHHH
T ss_pred             HHcCCccccccccCCCcceeE--EEEEeccc-------ccccccc---CCCCCCCCCceEEEEEecCCCCCCHHHHHHHH
Confidence            3468999887776643 4444  77764311       1101100   000011112233444444  799999999999


Q ss_pred             HHHCCceEEEEEeecC-CceEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccccc
Q 013389          346 FRENGLNVTRAEVSTE-RDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKE  400 (444)
Q Consensus       346 l~e~gl~I~~A~i~T~-g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~~~  400 (444)
                      |+.+|||+++.+..-. +..-.=.||| |.+|..-++ .+...-++|....-.+|-
T Consensus       229 Fa~~gINLtkIESRP~~~~~~~Y~Ffi-D~eg~~~d~-~v~~AL~~L~~~~~~~ki  282 (329)
T 3luy_A          229 FRDAGLNMTSFISRPIKGRTGTYSFIV-TLDAAPWEE-RFRDALVEIAEHGDWAKT  282 (329)
T ss_dssp             HHHTTCCEEEEEEEEETTEEEEEEEEE-EESSCTTSH-HHHHHHHHHHHTTCEEEE
T ss_pred             HHHCCcceEEEEeeECCCCCccEEEEE-EEeCCcCCH-HHHHHHHHHHHhCCeEEE
Confidence            9999999999999754 4456677877 778877553 333333445554444543

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=91.88  E-value=0.32  Score=47.58  Aligned_cols=114  Identities=16%  Similarity=0.213  Sum_probs=74.0

Q ss_pred             HhCC-eeEEEEEEEecC-CEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEec-CCCchHHHHHHH
Q 013389          269 TDME-YVVFHATINTAG-ERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVRLELCME-DRQGLLADVTRT  345 (444)
Q Consensus       269 ~~~~-~nI~~A~I~T~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr~~~~~~lev~~~-DRpGLL~~Itr~  345 (444)
                      ..+| +.|....|.... +...  |+|......+..                 ......+.|-+..+ |+||-|+++-..
T Consensus       162 ~~Yg~L~il~~~I~D~~~N~TR--Flvl~~~~~~~~-----------------~~~~~kTSl~f~~~~~~pGaL~~~L~~  222 (313)
T 3mwb_A          162 AEQPGLNVLAEDIGDNPDAVTR--FILVSRPGALPE-----------------RTGADKTTVVVPLPEDHPGALMEILDQ  222 (313)
T ss_dssp             HHCTTCEEEESCCCSCTTCEEE--EEEEECSCCCCC-----------------CCSSEEEEEEEECSSCCTTHHHHHHHH
T ss_pred             HHcCChhhhhhcccCCCcceeE--EEEEecCCCCCC-----------------CCCCCeEEEEEEeCCCCCCHHHHHHHH
Confidence            3567 999888886643 4444  777654332100                 11223566777775 999999999999


Q ss_pred             HHHCCceEEEEEeecCC-ceEEEEEEEEcCCCCCCChHHHHHHHHHHhhcccccccccc
Q 013389          346 FRENGLNVTRAEVSTER-DEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKELPM  403 (444)
Q Consensus       346 l~e~gl~I~~A~i~T~g-~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~~~~~~  403 (444)
                      |+.+|||+++.+..-.. ..-.=.||| |..|..-+ ..+...-++|......+|--..
T Consensus       223 Fa~~gINLtkIESRP~~~~~~~Y~Ffi-D~eg~~~d-~~v~~aL~~L~~~~~~~kiLGs  279 (313)
T 3mwb_A          223 FASRGVNLSRIESRPTGQYLGHYFFSI-DADGHATD-SRVADALAGLHRISPATRFLGS  279 (313)
T ss_dssp             HHTTTCCEEEEEEEECSSSTTSEEEEE-EEESCTTS-HHHHHHHHHHHHHCTTCEEEEE
T ss_pred             HHHCCccEEEEEEeecCCCCccEEEEE-EEeCCCCc-HHHHHHHHHHHHhcCcEEEEee
Confidence            99999999999997544 445667888 77787644 3344444455554445554443

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=91.40  E-value=0.77  Score=48.04  Aligned_cols=63  Identities=19%  Similarity=0.344  Sum_probs=50.3

Q ss_pred             CCceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecC--CceEEEEEEEEcCCCCCCChHHHHHHHH
Q 013389          323 SEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTE--RDEALNIFYVTDEMGNPADPKIIEAVRQ  389 (444)
Q Consensus       323 ~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~--g~~a~d~FyV~d~~g~~v~~~~~~~lr~  389 (444)
                      ++++.|-+.-.|+||.+..|+..|.++|+||....+...  |+.+.-++.+    ..+++++.+++|++
T Consensus       452 ~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~v----d~~~~~~~l~~l~~  516 (529)
T 1ygy_A          452 AQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL----DQDVPDDVRTAIAA  516 (529)
T ss_dssp             SCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE----SSCCCHHHHHHHHH
T ss_pred             CCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEE----CCCCCHHHHHHHhc
Confidence            346788899999999999999999999999999999754  5556655555    23666777888875

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=91.36  E-value=0.61  Score=47.83  Aligned_cols=106  Identities=11%  Similarity=0.176  Sum_probs=68.3

Q ss_pred             eEEEEEEe---CCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCCCC
Q 013389           35 ATLVKVDS---ARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSN  111 (444)
Q Consensus        35 ~t~V~v~~---~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~~~  111 (444)
                      .+.|+|.+   .+.+|.++++.++|++.|++|.-.. ++..   -..|.|...+-.+ ....+++.+++.+....-   .
T Consensus       298 ~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~-~~~~---~is~~V~~~d~~~-~~~~~~~el~~~~~~~~v---~  369 (446)
T 3tvi_A          298 FTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMP-SGVD---SVSLVIEDCKLDG-KCDKIIEEIKKQCNPDSI---E  369 (446)
T ss_dssp             EEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBC-EETT---EEEEEEEHHHHTT-THHHHHHHHHHHSCCSEE---E
T ss_pred             EEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEe-cCCC---EEEEEEecchHHH-HHHHHHHHHHHhcCCCcE---E
Confidence            45677776   5899999999999999999986432 1222   1236665432211 012233444433321100   1


Q ss_pred             CCCCceEEEEEEc---CCcchHHHHHHHHHHCCCeEEEEE
Q 013389          112 SFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAK  148 (444)
Q Consensus       112 ~~~~~t~i~v~~~---DrpGLl~~i~~vL~~~~~~I~~A~  148 (444)
                      ...+...|.|.|.   ..||+.+++..+|++.|+||....
T Consensus       370 v~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIs  409 (446)
T 3tvi_A          370 IHPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMID  409 (446)
T ss_dssp             EEEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             EeCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEE
Confidence            2245678888886   489999999999999999998544

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=90.43  E-value=0.76  Score=46.49  Aligned_cols=50  Identities=16%  Similarity=0.161  Sum_probs=44.2

Q ss_pred             CceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEc
Q 013389          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD  164 (444)
Q Consensus       115 ~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d  164 (444)
                      +...|.+.-.|+||.+..|+.+|+++|+||...+..+.++.+..++-+..
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD~  379 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEA  379 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEEC
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcCC
Confidence            56789999999999999999999999999999999997777777776654

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=89.78  E-value=1.2  Score=46.69  Aligned_cols=62  Identities=15%  Similarity=0.129  Sum_probs=48.3

Q ss_pred             CCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee--CCeEEEEEEEEcCCCCCCCCChHHHHHHH
Q 013389          114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQIDRIE  181 (444)
Q Consensus       114 ~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~--~~~~~dvf~V~d~~~g~~i~~~~r~~~i~  181 (444)
                      ...+.|.+.-+|+||.+.+|+..|.++|+||.+.++...  ++.+..++.+.++     + +++.+++|+
T Consensus       452 ~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~-----~-~~~~l~~l~  515 (529)
T 1ygy_A          452 AQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQD-----V-PDDVRTAIA  515 (529)
T ss_dssp             SCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSC-----C-CHHHHHHHH
T ss_pred             CCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCC-----C-CHHHHHHHh
Confidence            456788899999999999999999999999999999864  4667667766553     3 345555554

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=88.81  E-value=0.73  Score=46.80  Aligned_cols=51  Identities=24%  Similarity=0.326  Sum_probs=44.0

Q ss_pred             CCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCC
Q 013389           32 CPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLN   85 (444)
Q Consensus        32 ~~~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~   85 (444)
                      +.+...|.+.-.|.||.|.+|..+|++.|+||.+-+..|.+.++.   .|.|-+
T Consensus       340 ~~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y---~~~d~~  390 (416)
T 3k5p_A          340 RPTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGY---LVMEAD  390 (416)
T ss_dssp             CSSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEE---EEEEEC
T ss_pred             CCCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEE---EEEEec
Confidence            346789999999999999999999999999999999999999875   445533

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=87.73  E-value=1.9  Score=44.20  Aligned_cols=105  Identities=7%  Similarity=0.148  Sum_probs=71.6

Q ss_pred             CCeEEEEEEc---cCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccC
Q 013389          245 RSYSVVNVQC---KDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRR  321 (444)
Q Consensus       245 ~~~tvv~V~~---~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr  321 (444)
                      ++.+.|+|.+   .+.||.+++|..+|++++++|..-  .+...  .-.|.|...+-.     ...+++.+.|...+...
T Consensus       296 ~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i--~~~~~--~is~~V~~~d~~-----~~~~~~~~el~~~~~~~  366 (446)
T 3tvi_A          296 KNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHM--PSGVD--SVSLVIEDCKLD-----GKCDKIIEEIKKQCNPD  366 (446)
T ss_dssp             EEEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEB--CEETT--EEEEEEEHHHHT-----TTHHHHHHHHHHHSCCS
T ss_pred             CCEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEE--ecCCC--EEEEEEecchHH-----HHHHHHHHHHHHhcCCC
Confidence            3578899986   699999999999999999999753  22222  234777543211     02344555555544210


Q ss_pred             ----CCCceEEEEEec---CCCchHHHHHHHHHHCCceEEEEEe
Q 013389          322 ----ASEGVRLELCME---DRQGLLADVTRTFRENGLNVTRAEV  358 (444)
Q Consensus       322 ----~~~~~~lev~~~---DRpGLL~~Itr~l~e~gl~I~~A~i  358 (444)
                          ...-..|.|.+.   .+||+.+.+.++|.+.|+||....-
T Consensus       367 ~v~v~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsq  410 (446)
T 3tvi_A          367 SIEIHPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQ  410 (446)
T ss_dssp             EEEEEEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEE
T ss_pred             cEEEeCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEe
Confidence                111357778776   5899999999999999999987653

>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A

Probab=85.02  E-value=0.94  Score=45.92  Aligned_cols=67  Identities=19%  Similarity=0.312  Sum_probs=49.0

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecC-CceEEEEEEEEcCCCCCCChHHHHHHHHHHhhc
Q 013389          325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTE-RDEALNIFYVTDEMGNPADPKIIEAVRQKIGLS  394 (444)
Q Consensus       325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~-g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~  394 (444)
                      .+.|-+...|+||-|+++-..|+.+|||+++.+..-. +....=.||| |.. .. ++..+.++-++|...
T Consensus        34 KTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfV-D~e-h~-~d~~v~~AL~eL~~~  101 (429)
T 1phz_A           34 AISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFT-YLD-KR-TKPVLGSIIKSLRND  101 (429)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEE-CBC-GG-GHHHHHHHHHHHHHT
T ss_pred             eEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEE-EEe-eC-CCHHHHHHHHHHHhh
Confidence            4667777789999999999999999999999999644 4457778888 665 33 333344444444443

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=84.17  E-value=4.3  Score=42.19  Aligned_cols=108  Identities=17%  Similarity=0.207  Sum_probs=69.8

Q ss_pred             CeEEEEEEe---CCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCC-chHHHHHHHHHhhhccCCC
Q 013389           34 TATLVKVDS---ARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLT-DESVISYIEQSLETIHYGR  109 (444)
Q Consensus        34 ~~t~V~v~~---~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~-~~~~~~~i~~aL~~~~~~~  109 (444)
                      +.+.|+|.+   .+++|.++++.++|++.|++|.-.. ++...   ..|.|...+..+.. ..+.++.+.+.|.....  
T Consensus       340 ~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~-sse~s---is~~v~~~~~~~~~~~~~~l~~~~~el~~~~~--  413 (510)
T 2cdq_A          340 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA-TSEVS---ISLTLDPSKLWSRELIQQELDHVVEELEKIAV--  413 (510)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE-EETTE---EEEEECCGGGSSSCCCHHHHHHHHHHHTTTSE--
T ss_pred             CeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEE-eCCCe---EEEEEechHhhhhhHHHHHHHHHHHHhCCCCe--
Confidence            445677775   6789999999999999999998763 23332   23555432211110 12344445544543100  


Q ss_pred             CCCCCCceEEEEEEc--CCcchHHHHHHHHHHCCCeEEEE
Q 013389          110 SNSFNGLTALELTGT--DRVGLLSEVFAVLADLQCSVVEA  147 (444)
Q Consensus       110 ~~~~~~~t~i~v~~~--DrpGLl~~i~~vL~~~~~~I~~A  147 (444)
                      -....+...|.|.|.  ..||+.+++..+|++.|+||...
T Consensus       414 v~~~~~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mI  453 (510)
T 2cdq_A          414 VNLLKGRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMI  453 (510)
T ss_dssp             EEEEEEEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEE
T ss_pred             EEEeCCcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEE
Confidence            011234567888887  78899999999999999999854

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=82.95  E-value=1.1  Score=38.81  Aligned_cols=100  Identities=14%  Similarity=0.141  Sum_probs=61.2

Q ss_pred             CCeEEEEEEe---CCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCC
Q 013389           33 PTATLVKVDS---ARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGR  109 (444)
Q Consensus        33 ~~~t~V~v~~---~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~  109 (444)
                      .+.+.|++.+   +++||..+++.+.|++.|+||.-... +..   -..|.|.+.+       .. ..+.+.|.....  
T Consensus        16 ~~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~~-s~~---~Isf~v~~~~-------~~-~~il~~l~~~~~--   81 (157)
T 3mah_A           16 DGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVAT-SEV---GVSLTIDNDK-------NL-PDIVRALSDIGD--   81 (157)
T ss_dssp             EEEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEEC-CSS---EEEEEESCCT-------TH-HHHHHHHTTTEE--
T ss_pred             CCEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEEe-cCC---EEEEEECChH-------HH-HHHHHHHhccCe--
Confidence            3567888874   47899999999999999999854432 222   1245555321       11 222222322100  


Q ss_pred             CCCCCCceEEEEEEc---CCcchHHHHHHHHHHCCCeEEEEE
Q 013389          110 SNSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAK  148 (444)
Q Consensus       110 ~~~~~~~t~i~v~~~---DrpGLl~~i~~vL~~~~~~I~~A~  148 (444)
                      -....+...|.+.|.   ++||..+++..+|+  |+||....
T Consensus        82 v~~~~~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~is  121 (157)
T 3mah_A           82 VTVDKDMVIICIVGDMEWDNVGFEARIINALK--GVPVRMIS  121 (157)
T ss_dssp             EEEEEEEEEEEEEC------CCHHHHHHHTTT--TSCCSEEE
T ss_pred             EEEeCCeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEe
Confidence            011234567788875   68999999999999  99988543

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=82.03  E-value=4.1  Score=41.28  Aligned_cols=50  Identities=12%  Similarity=0.094  Sum_probs=43.4

Q ss_pred             CCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEE
Q 013389          114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVK  163 (444)
Q Consensus       114 ~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~  163 (444)
                      .+.+.|.+.-.|.||.|..|+.+|+++|+||.+-...|.++.+..++-|.
T Consensus       341 ~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~~  390 (416)
T 3k5p_A          341 PTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEAD  390 (416)
T ss_dssp             SSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEEC
T ss_pred             CCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEec
Confidence            35689999999999999999999999999999988888877766666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	444
d1y7pa2	77	d.58.18.12 (A:2-78) Hypothetical protein AF1403, N	3e-04
d1y7pa2	77	d.58.18.12 (A:2-78) Hypothetical protein AF1403, N	0.003
d1ygya3	78	d.58.18.1 (A:452-529) Phosphoglycerate dehydrogena	3e-04
d1u8sa1	86	d.58.18.5 (A:2-87) putative transcriptional repres	0.003
d1sc6a3	84	d.58.18.1 (A:327-410) Phosphoglycerate dehydrogena	0.003
d2f06a1	71	d.58.18.11 (A:71-141) Hypothetical protein BT0572	0.004

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 37.0 bits (86), Expect = 3e-04
 Identities = 10/75 (13%), Positives = 29/75 (38%), Gaps = 11/75 (14%)

Query: 116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASL---IYVKDCNSGSPIE 172
           L  L +   +++G+L ++  ++A+   ++  A+ +            IY +         
Sbjct: 1   LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGG----- 55

Query: 173 DSQQIDRIEARLRNV 187
                ++I  R++  
Sbjct: 56  ---DFEKILERVKTF 67

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 34.3 bits (79), Expect = 0.003
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVST-ERDEALNIFYVTDEMGNPADPKIIEA 386
           L +  E++ G+L D+T    E G N+T A+    +  E      +  E+      KI+E 
Sbjct: 4   LRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILER 63

Query: 387 VRQKIGLSNLKVKE 400
           V+    +  ++ +E
Sbjct: 64  VKTFDYIIEIEEEE 77

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.1 bits (86), Expect = 3e-04
 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 2/78 (2%)

Query: 324 EGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKI 383
           +G+ L +   DR G L  +       G+N+  A++S   D       +   +       +
Sbjct: 2   QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLS--EDAEGPGATILLRLDQDVPDDV 59

Query: 384 IEAVRQKIGLSNLKVKEL 401
             A+   +    L+V +L
Sbjct: 60  RTAIAAAVDAYKLEVVDL 77

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

 Score = 34.4 bits (79), Expect = 0.003
 Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 8/69 (11%)

Query: 119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQID 178
           +   GTDR G+ +EV  ++    C+++++++         L+ +              I 
Sbjct: 8   ITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLIS--------GSPSNIT 59

Query: 179 RIEARLRNV 187
           R+E  L  +
Sbjct: 60  RVETTLPLL 68

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} Length = 84

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

 Score = 34.3 bits (79), Expect = 0.003
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 2/77 (2%)

Query: 322 ASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADP 381
              G RL    E+R G+L  + + F E G+N+    + T       +  +  E       
Sbjct: 8   LHGGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI--EADEDVAE 65

Query: 382 KIIEAVRQKIGLSNLKV 398
           K ++A++   G    ++
Sbjct: 66  KALQAMKAIPGTIRARL 82

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 71

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 33.9 bits (78), Expect = 0.004
 Identities = 6/46 (13%), Positives = 15/46 (32%)

Query: 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTD 373
           + +   +  G LA V       G+ +         + A  +   ++
Sbjct: 2   VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSN 47

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	444
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.68
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.64
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.46
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.44
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.3
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	97.98
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.79
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.74
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.65
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.5
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.49
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.46
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.43
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	97.32
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.3
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	97.29
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	97.2
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.19
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.1
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	96.93
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	96.83
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	96.79
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	96.39
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	95.08
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	91.75
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	88.78
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	85.79
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	83.75
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	82.74

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.68  E-value=5.8e-08  Score=75.74  Aligned_cols=67  Identities=21%  Similarity=0.256  Sum_probs=55.5

Q ss_pred             CCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhc
Q 013389           32 CPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETI  105 (444)
Q Consensus        32 ~~~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~  105 (444)
                      .....+|++.|+||||++++++++|+++||||.++++++.+|.+.-.+.|.-       +|..++.+++.|...
T Consensus         2 m~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~-------~~~~~~~l~~~L~~l   68 (86)
T d1u8sa1           2 LTQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISG-------SPSNITRVETTLPLL   68 (86)
T ss_dssp             CCEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE-------CHHHHHHHHHHHHHH
T ss_pred             CccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEc-------CcccHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999999998876776664       244566777766544

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.64  E-value=1.2e-07  Score=73.98  Aligned_cols=65  Identities=20%  Similarity=0.167  Sum_probs=55.0

Q ss_pred             CCeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 013389          245 RSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEA  316 (444)
Q Consensus       245 ~~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~  316 (444)
                      ..+.+|++.|+||||++++++++|+++|+||.+++..+.++.+.-.+.|.-+       ++..++|++.|.+
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~~-------~~~~~~l~~~L~~   67 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS-------PSNITRVETTLPL   67 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC-------HHHHHHHHHHHHH
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEcC-------cccHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999988877777632       2356777777754

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.46  E-value=5.5e-07  Score=69.45  Aligned_cols=63  Identities=11%  Similarity=0.124  Sum_probs=50.7

Q ss_pred             EEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 013389          248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEA  316 (444)
Q Consensus       248 tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~  316 (444)
                      .+|++.|+||||++++++++|+++|+||.+.+-.+.++.+.-.+.+.-+.+.      ..++|++.|..
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~~~~------~~~~l~~~l~~   65 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQ------DFTYLRNEFEA   65 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCC------CHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEecCC------CHHHHHHHHHH
Confidence            5899999999999999999999999999999999988877776767644332      24556666644

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.44  E-value=6.8e-07  Score=68.90  Aligned_cols=50  Identities=16%  Similarity=0.222  Sum_probs=44.5

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCC
Q 013389           36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLN   85 (444)
Q Consensus        36 t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~   85 (444)
                      .+|++.|+||||++++++++|+++|+||.+...++.++.|.-.+.+..+.
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~~   52 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDE   52 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEec
Confidence            58999999999999999999999999999999999888887666666543

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.30  E-value=4.7e-07  Score=71.43  Aligned_cols=67  Identities=13%  Similarity=0.179  Sum_probs=47.6

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCc----eEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013389          326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERD----EALNIFYVTDEMGNPADPKIIEAVRQKIGL  393 (444)
Q Consensus       326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~----~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~  393 (444)
                      +.|+|.++|||||+++||++|+++|+||..+...|+..    ...+.|+++-....|-+ ..++.|+++|..
T Consensus         7 v~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p~~-~~~~~l~~~l~~   77 (93)
T d1u8sa2           7 VEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSG-CNLMQLQEEFDA   77 (93)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTT-SCHHHHHHHHHH
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEEEcCcc-ccHHHHHHHHHH
Confidence            56778899999999999999999999999999988654    35667887644333322 234566666555

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=97.98  E-value=1.9e-05  Score=61.87  Aligned_cols=39  Identities=15%  Similarity=0.157  Sum_probs=34.7

Q ss_pred             CceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC
Q 013389          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN  153 (444)
Q Consensus       115 ~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~  153 (444)
                      ....|.|.|+|||||+++|+++|+++|+||.+.+..|..
T Consensus         5 ~tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~   43 (93)
T d1u8sa2           5 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTIS   43 (93)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred             eEEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhccccc
Confidence            356788889999999999999999999999999887743

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.79  E-value=3.8e-05  Score=57.05  Aligned_cols=47  Identities=15%  Similarity=0.228  Sum_probs=43.2

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEe
Q 013389           37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTD   83 (444)
Q Consensus        37 ~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d   83 (444)
                      +|.|.-+|+||-|++++++|.+.|+||...|.+..+++.+-+|.|.|
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd   47 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSN   47 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESC
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECC
Confidence            57889999999999999999999999999999988888888888865

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.74  E-value=8.1e-05  Score=56.25  Aligned_cols=65  Identities=18%  Similarity=0.342  Sum_probs=50.5

Q ss_pred             CceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecC--CceEEEEEEEEcCCCCCCChHHHHHHHHHHh
Q 013389          324 EGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTE--RDEALNIFYVTDEMGNPADPKIIEAVRQKIG  392 (444)
Q Consensus       324 ~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~--g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~  392 (444)
                      +++.|-+.-.||||+|..|+.+|.++|+||....+.+.  |+.|.-++-+    ..+++++.+++|++--+
T Consensus         2 eG~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v----D~~~~~~vl~~I~~~~~   68 (78)
T d1ygya3           2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL----DQDVPDDVRTAIAAAVD   68 (78)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE----SSCCCHHHHHHHHHHHT
T ss_pred             CceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc----CCCccHHHHHHHHcCCC
Confidence            46788999999999999999999999999999998764  4555554444    23666677777776543

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.65  E-value=0.0001  Score=54.65  Aligned_cols=47  Identities=13%  Similarity=0.162  Sum_probs=42.4

Q ss_pred             EEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEc
Q 013389          118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD  164 (444)
Q Consensus       118 ~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d  164 (444)
                      +|.|..+|+||-|++++.+|++.|+||++..++..+++..-+|.|.|
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd   47 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSN   47 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESC
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECC
Confidence            47788999999999999999999999999999998888887787754

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.50  E-value=0.00033  Score=52.69  Aligned_cols=48  Identities=17%  Similarity=0.158  Sum_probs=40.5

Q ss_pred             CceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee--CCeEEEEEEE
Q 013389          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYV  162 (444)
Q Consensus       115 ~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~--~~~~~dvf~V  162 (444)
                      +.+.+.+.-.|+||.+++|+.+|+++|+||...++.+.  ++.+..++.+
T Consensus         2 eG~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v   51 (78)
T d1ygya3           2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL   51 (78)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE
T ss_pred             CceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc
Confidence            46789999999999999999999999999999998774  4556555554

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.49  E-value=6.4e-05  Score=56.68  Aligned_cols=61  Identities=26%  Similarity=0.384  Sum_probs=40.5

Q ss_pred             EEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC-ce--EEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013389          327 RLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER-DE--ALNIFYVTDEMGNPADPKIIEAVRQKIGL  393 (444)
Q Consensus       327 ~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g-~~--a~d~FyV~d~~g~~v~~~~~~~lr~~l~~  393 (444)
                      -|.|.+.||||+|++|+.+|+++|+||..+...|.. +.  ..-.||+.+..+ .     ++.|-++|..
T Consensus         3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~~~-~-----l~~ll~kL~~   66 (77)
T d1y7pa2           3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGG-D-----FEKILERVKT   66 (77)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSS-C-----HHHHHHHHHT
T ss_pred             eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcCcc-c-----HHHHHHHHHc
Confidence            478999999999999999999999999999877632 33  455666654422 1     4455555544

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.46  E-value=0.00019  Score=52.96  Aligned_cols=45  Identities=20%  Similarity=0.348  Sum_probs=40.2

Q ss_pred             EEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEE
Q 013389          327 RLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYV  371 (444)
Q Consensus       327 ~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV  371 (444)
                      .+.|...||||.|++|+.+|+++|+||....+....+.+.-.|.|
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv   49 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV   49 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEE
Confidence            488999999999999999999999999999998777887777744

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.43  E-value=0.0003  Score=51.83  Aligned_cols=48  Identities=21%  Similarity=0.212  Sum_probs=40.6

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEe
Q 013389           36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTD   83 (444)
Q Consensus        36 t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d   83 (444)
                      -.+.|+..||||.|++++++|++.|+||..-.+.....+.+-.|.|.+
T Consensus         4 ~QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv~~   51 (70)
T d2f06a2           4 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSD   51 (70)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEESC
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEECC
Confidence            368999999999999999999999999999999866666665665554

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.32  E-value=0.00039  Score=52.14  Aligned_cols=64  Identities=13%  Similarity=0.230  Sum_probs=49.0

Q ss_pred             eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEe-eCCeE-EEEEEEEcCCCCCCCCChHHHHHHHHHHHHHh
Q 013389          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRI-ASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL  188 (444)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T-~~~~~-~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL  188 (444)
                      ..|.+...|+||.|++|+++|+..|+||.+..+.- .+... ..++.+..        +++.+++|.++|.+..
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~--------~~~~i~qi~kQL~Klv   68 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG--------PDEIVEQITKQLNKLI   68 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE--------CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEEC--------CHHHHHHHHHHHhCCc
Confidence            46789999999999999999999999999988874 33333 33444433        3467788888888754

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.30  E-value=0.00014  Score=54.66  Aligned_cols=48  Identities=19%  Similarity=0.400  Sum_probs=36.4

Q ss_pred             eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee-CC--eEEEEEEEEc
Q 013389          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NG--RIASLIYVKD  164 (444)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~-~~--~~~dvf~V~d  164 (444)
                      ..|.|.+.||||+|++|+.+++++++||.+.+..+. +|  .....|++.+
T Consensus         2 ~~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~   52 (77)
T d1y7pa2           2 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEI   52 (77)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEE
T ss_pred             eeEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEc
Confidence            468999999999999999999999999999998874 34  3345677776

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=0.00056  Score=51.08  Aligned_cols=65  Identities=15%  Similarity=0.259  Sum_probs=48.4

Q ss_pred             eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEe-eCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHh
Q 013389          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL  188 (444)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T-~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL  188 (444)
                      ..+.+...|+||+|++|+++|+..|+||.+..+.- .+..+...-.+...       +++.+++|.++|.+..
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~-------~~~~i~qi~kQL~Kli   67 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG-------DEKVLEQIEKQLHKLV   67 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES-------CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEEC-------CHHHHHHHHHHHhCCC
Confidence            36788999999999999999999999999988874 44444333233332       3566788888888744

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=0.0017  Score=49.26  Aligned_cols=42  Identities=17%  Similarity=0.161  Sum_probs=37.0

Q ss_pred             CceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeE
Q 013389          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRI  156 (444)
Q Consensus       115 ~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~  156 (444)
                      ....|.+.-.|+||.+++|+.+|+++|+||.+....+.++..
T Consensus        10 ~~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~   51 (84)
T d1sc6a3          10 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMG   51 (84)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEE
T ss_pred             CCeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCc
Confidence            457899999999999999999999999999999888866433

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.19  E-value=0.00055  Score=51.39  Aligned_cols=69  Identities=17%  Similarity=0.335  Sum_probs=52.8

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhhcccccc
Q 013389          326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVK  399 (444)
Q Consensus       326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~~  399 (444)
                      +.+.+...|+||+|++|+..|+.+|+||.++.+....+...-.+-+.- .|.   ++.++++.++|.+. .+|.
T Consensus         4 ~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv-~g~---~~~i~qi~kQl~Kl-idV~   72 (78)
T d2fgca2           4 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMV-KGD---DKTIEQIEKQAYKL-VEVV   72 (78)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEE-EEC---TTHHHHHHHHHTTS-TTEE
T ss_pred             EEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEE-EcC---HHHHHHHHHHHhCC-cCEE
Confidence            578899999999999999999999999999999866665554444431 232   35789999998883 3443

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.10  E-value=0.0011  Score=49.68  Aligned_cols=63  Identities=17%  Similarity=0.285  Sum_probs=45.9

Q ss_pred             eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC-CeEE-EEEEEEcCCCCCCCCChHHHHHHHHHHHHH
Q 013389          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIA-SLIYVKDCNSGSPIEDSQQIDRIEARLRNV  187 (444)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~-~~~~-dvf~V~d~~~g~~i~~~~r~~~i~~~L~~v  187 (444)
                      +.|.+...|+||+|++|+++|+.+|+||.+..+.... .... -++.+..        +++..++|.++|.+.
T Consensus         4 ~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g--------~~~~i~qi~kQl~Kl   68 (78)
T d2fgca2           4 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG--------DDKTIEQIEKQAYKL   68 (78)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEE--------CTTHHHHHHHHHTTS
T ss_pred             EEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEc--------CHHHHHHHHHHHhCC
Confidence            5789999999999999999999999999998877643 3333 3333332        124456777777653

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.0029  Score=47.97  Aligned_cols=63  Identities=24%  Similarity=0.391  Sum_probs=47.4

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013389          325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGL  393 (444)
Q Consensus       325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~  393 (444)
                      +..|-+.-.|+||.|++|+.+|.++|+||......+.++-+.-.-.+. .     +.+..+++.++|.+
T Consensus        11 ~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~~~i~-~-----D~~~~~~v~~~i~~   73 (84)
T d1sc6a3          11 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIE-A-----DEDVAEKALQAMKA   73 (84)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEE-C-----CHHHHHHHHHHHHT
T ss_pred             CeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcEEEEEEE-C-----CCCCHHHHHHHHHC
Confidence            567888899999999999999999999999999998876654443332 2     33444555566554

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.0018  Score=48.28  Aligned_cols=65  Identities=23%  Similarity=0.430  Sum_probs=50.8

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhhc
Q 013389          326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLS  394 (444)
Q Consensus       326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~  394 (444)
                      ..+.+...|+||+|++|+-.|+.+|+||.+..+.-........|-+.- .|   +++.++++.++|.+.
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv-~~---~~~~i~qi~kQL~Kl   66 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQT-VG---DEKVLEQIEKQLHKL   66 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEE-ES---CHHHHHHHHHHHHHS
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEE-EC---CHHHHHHHHHHHhCC
Confidence            357888999999999999999999999999999844455444454432 22   357889999999884

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=96.79  E-value=0.0009  Score=50.06  Aligned_cols=69  Identities=23%  Similarity=0.395  Sum_probs=50.8

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhhcccccc
Q 013389          326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVK  399 (444)
Q Consensus       326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~~  399 (444)
                      ..+.+...|+||+|++|+-.|+.+|+||.+..+.-..+...-.+-+. ..|   +++.++++.++|.+. .+|.
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtiv-v~~---~~~~i~qi~kQL~Kl-vdVi   71 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLV-TNG---PDEIVEQITKQLNKL-IEVV   71 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEE-EEE---CHHHHHHHHHHHHHS-TTEE
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEE-EEC---CHHHHHHHHHHHhCC-cCEE
Confidence            46788999999999999999999999999999984434433333332 112   357889999999884 3443

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.39  E-value=0.0049  Score=46.27  Aligned_cols=67  Identities=25%  Similarity=0.304  Sum_probs=48.3

Q ss_pred             EEecCCCchHHHHHHHHHHCCceEEEEEeec-CCceEEEEEEEEcCCCCCCChHHHHHHHHHHhhcccccc
Q 013389          330 LCMEDRQGLLADVTRTFRENGLNVTRAEVST-ERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVK  399 (444)
Q Consensus       330 v~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T-~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~~  399 (444)
                      +...|+||-|+++-..|+++|+|+++.+..- .+..-.=.||| |.+|.. ++ .++.+-++|......+|
T Consensus         7 ~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~i-d~~g~~-~~-~~~~~l~~L~~~~~~~k   74 (80)
T d2qmwa2           7 TPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFV-QADSAI-TT-DIKKVIAILETLDFKVE   74 (80)
T ss_dssp             EESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEE-EESCCS-CH-HHHHHHHHHHHTTEEEE
T ss_pred             EeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEE-EEecCC-cH-HHHHHHHHHHHhcCcEE
Confidence            3456999999999999999999999999974 44456677888 566754 43 45555556555444443

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.08  E-value=0.012  Score=45.70  Aligned_cols=65  Identities=20%  Similarity=0.332  Sum_probs=48.7

Q ss_pred             ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecC-CceEEEEEEEEcCCCCCCChHHHHHHHHHHh
Q 013389          325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTE-RDEALNIFYVTDEMGNPADPKIIEAVRQKIG  392 (444)
Q Consensus       325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~-g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~  392 (444)
                      .+.|-+...|+||-|+++-..|+++|||+++.+.... +....=.||| |..|..  +..++.+-+.|.
T Consensus        16 ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~i-d~eg~~--~~~i~~~l~~L~   81 (97)
T d1phza1          16 AISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFT-YLDKRT--KPVLGSIIKSLR   81 (97)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEE-CBCGGG--HHHHHHHHHHHH
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEE-EcccCC--hHHHHHHHHHHH
Confidence            4778888899999999999999999999999998744 4445567888 677763  333444444443

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.75  E-value=0.17  Score=38.87  Aligned_cols=55  Identities=15%  Similarity=0.227  Sum_probs=38.3

Q ss_pred             CCCCeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec--CCEEEEEEEEEeCCCC
Q 013389          243 ADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA--GERAYLEFYIRHIDGT  299 (444)
Q Consensus       243 ~~~~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~--g~~a~d~F~V~~~~g~  299 (444)
                      ...+.|-|.+..+|+||-|+++...|+++|+|+.+-.=...  ..+-+ .|||. .+|.
T Consensus        12 ~~~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y-~F~id-~eg~   68 (97)
T d1phza1          12 NQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEY-EFFTY-LDKR   68 (97)
T ss_dssp             CSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEE-EEEEC-BCGG
T ss_pred             CCCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceE-EEEEE-cccC
Confidence            34456777778899999999999999999999865332222  23333 37774 5664

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=88.78  E-value=0.67  Score=33.92  Aligned_cols=50  Identities=14%  Similarity=0.206  Sum_probs=33.2

Q ss_pred             EEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec-CCEEEEEEEEEeCCCC
Q 013389          249 VVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA-GERAYLEFYIRHIDGT  299 (444)
Q Consensus       249 vv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~-g~~a~d~F~V~~~~g~  299 (444)
                      .+.+.-.|+||-|+++...|+++|+|+.+-.=.-. +..-.-.|||. .+|.
T Consensus         4 ~~i~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id-~~g~   54 (80)
T d2qmwa2           4 FLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQ-ADSA   54 (80)
T ss_dssp             EEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEE-ESCC
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEE-EecC
Confidence            34444579999999999999999999975433222 22222237775 4564

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=85.79  E-value=0.99  Score=31.75  Aligned_cols=60  Identities=12%  Similarity=0.087  Sum_probs=41.2

Q ss_pred             EEEEEEe---CCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHh
Q 013389           36 TLVKVDS---ARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSL  102 (444)
Q Consensus        36 t~V~v~~---~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL  102 (444)
                      ..|++.+   .++||+.+++...|++.|+||.-....+..--  ..|.|.+.+.     ++.++.|++++
T Consensus         2 a~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~Se~~--Is~~V~~~d~-----~~Av~~Lh~~F   64 (67)
T d2hmfa2           2 CVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVN--ISFVIDEKDL-----LNCVRKLHEKF   64 (67)
T ss_dssp             EEEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESSCSSE--EEEEEEGGGH-----HHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecCccce--EEEEEeHHHH-----HHHHHHHHHHH
Confidence            3577776   58999999999999999999987666433221  2466766433     34555566554

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.75  E-value=0.49  Score=35.58  Aligned_cols=34  Identities=32%  Similarity=0.575  Sum_probs=29.8

Q ss_pred             CceEEEEEEc---CCcchHHHHHHHHHHCCCeEEEEE
Q 013389          115 GLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAK  148 (444)
Q Consensus       115 ~~t~i~v~~~---DrpGLl~~i~~vL~~~~~~I~~A~  148 (444)
                      +.+.|.|.|.   ++||.+++++.+|++.|+||.--.
T Consensus        12 ~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is   48 (91)
T d2cdqa2          12 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA   48 (91)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEE
Confidence            4578888875   899999999999999999999654

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=82.74  E-value=1.2  Score=33.77  Aligned_cols=64  Identities=8%  Similarity=0.078  Sum_probs=45.4

Q ss_pred             CCeEEEEEEe---CCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhh
Q 013389           33 PTATLVKVDS---ARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLE  103 (444)
Q Consensus        33 ~~~t~V~v~~---~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~  103 (444)
                      .+...|++.+   +++||+.+++...|++.|+||.--...+..- - ..|.|...+.     ++.++.|++++.
T Consensus        13 ~nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se~-~-Isf~V~~~d~-----~~a~~~L~~~f~   79 (100)
T d2hmfa3          13 KNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSET-N-ISLVVSEEDV-----DKALKALKREFG   79 (100)
T ss_dssp             EEEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTTC-C-EEEEECSTTH-----HHHHHHHHHHHC
T ss_pred             CCEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCcc-e-EEEEEeHHHH-----HHHHHHHHHHHH
Confidence            3577899987   6999999999999999999999866544221 1 2466655332     446666776654