Citrus Sinensis ID: 013402

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440---
MFRFLVTLSILLSYFNCFSLASVVTCSGIVPMRYRNDKISITDFGGVGDGKTLNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSFNLTSHMTLYLAKGAVIKATQDTWNWPLIAPLPSYGRGRERPGGRYMSFIHGDGLQDVVITGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGSAYQVKPWPCSELSSSQQTGACSNHF
cHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEccccccccccccHHHHHHHHHHHHHHccccccEEEEcccEEEEEEEEEEcccEEEEccccEEEcccccccccccccccccccccccccccEEEEEEEcccEEEEEEcccEEEcccccHHHccccccccccccccEEEEEEEEcEEEEcEEEEccccEEEEEEEEEEEEEEEEEEEccccccccccccccccccEEEEEcEEEccccEEEEcccccccccccccccccEEEEEEEEcccccEEEEcccccccEEEEEEEcEEEEcccEEEEEEEcccccEEEEEEEEEEEEEccccEEEEEEcccccccccccccccccEEEcEEEEEEEEEcccEEEEEEEcccccEEcEEEEEEEEEEEcccccccEEEEEEEEEEcccccccccccccccccccccccc
ccHHHHHHHHHHHHHHHHHHccHHcccccccccccccEEEEEccccccccccccHHHHHHHHHHHHHHcccccEEEEEccccEEEccEEEcccEEEEEEccEEEEccccccccccccccccccccccccccccEEEEEEccccEEEEEccccEEcccccHHHHHHcccccccccccEEEEEEcccEEEEEEEEEccccEEEEEEcccEEEEEEEEEEccccccccccEEEEccEEEEEEccEEEcccccEEEEEccHHccEEEccccccEEEEEEEEEccccEEEEEccccccEEEEEEEEEEEEEcccEEEEEEcccccEEEEEEEEEEEEEEcEEEEEEEEccccccccccccccccEEEEEEEEEEEEEEEccccEEEEcccccccccEEEEEEEEEEcccccccccEEccEEEEEccccccccHHcccccccccccccc
MFRFLVTLSILLSYFNCFSLASVVtcsgivpmryrndkisitdfggvgdgktlNTKAFREAIYRIQHLRrsggtllyvppgvyltgsfnltsHMTLYLAKGAVIKAtqdtwnwpliaplpsygrgrerpggrymsfihgdglqdvvitgengtidgqgAIWWNMWrqrtlpftrpnliefmNSRSIIISnvifqnspfwnihpvycsNVVIRYVTIlapadspntdgidpdsssnvciedsyistgddlVAVKSgwdeygiayghpssgitirrvtgsspfsgiavgsetsggVENVLAEHINLynvgvgihvktnigrggfirniTVSDVYMENARKGIKiagdvgdhpddkfnpnalpvvngitikdvwgtkvqqsgliqglknspftgiclsninlqgvagptspplkcsdvsgsayqvkpwpcselsssqqtgacsnhf
MFRFLVTLSILLSYFNCFSLASVVTCSGIVPMRYRNDKisitdfggvgdgkTLNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSFNLTSHMTLYLAKGAVIKATqdtwnwpliaplpsyGRGRERPGGRYMSFIHGDGLQDVVITGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPAdspntdgidpDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKtnigrggfirNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGSAYQVKPWPCSelsssqqtgacsnhf
MFRFLVTLSILLSYFNCFSLASVVTCSGIVPMRYRNDKISITDFGGVGDGKTLNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSFNLTSHMTLYLAKGAVIKATQDTWNWPLIAPLPSYgrgrerpggrYMSFIHGDGLQDVVITGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGSAYQVKPWPCSELSSSQQTGACSNHF
*FRFLVTLSILLSYFNCFSLASVVTCSGIVPMRYRNDKISITDFGGVGDGKTLNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSFNLTSHMTLYLAKGAVIKATQDTWNWPLIAPLPSYGRGRERPGGRYMSFIHGDGLQDVVITGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAP****************VCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGVAG***************************************
*FRFLVTLSILLSYFNCFSLASVVTCSGIVPMRYRNDKISITDFGGVGDGKTLNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSFNLTSHMTLYLAKGAVIKATQDTWNWPLIAPLPSYGRGRERPGGRYMSFIHGDGLQDVVITGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGSAYQVKPWPCSE*********CSNHF
MFRFLVTLSILLSYFNCFSLASVVTCSGIVPMRYRNDKISITDFGGVGDGKTLNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSFNLTSHMTLYLAKGAVIKATQDTWNWPLIAPLPSYGRGRERPGGRYMSFIHGDGLQDVVITGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGSAYQVKPW******************
MFRFLVTLSILLSYFNCFSLASVVTCSGIVPMRYRNDKISITDFGGVGDGKTLNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSFNLTSHMTLYLAKGAVIKATQDTWNWPLIAPLPSYGRGRERPGGRYMSFIHGDGLQDVVITGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGSAYQVKPWPCSELS************
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFRFLVTLSILLSYFNCFSLASVVTCSGIVPMRYRNDKISITDFGGVGDGKTLNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSFNLTSHMTLYLAKGAVIKATQDTWNWPLIAPLPSYGRGRERPGGRYMSFIHGDGLQDVVITGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGSAYQVKPWPCSELSSSQQTGACSNHF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query443 2.2.26 [Sep-21-2011]
A7PZL3491 Probable polygalacturonas no no 0.916 0.826 0.506 1e-116
Q8RY29433 Polygalacturonase ADPG2 O no no 0.747 0.764 0.298 4e-29
Q9LW07456 Probable polygalacturonas no no 0.817 0.793 0.283 8e-26
Q02096462 Polygalacturonase OS=Pers N/A no 0.792 0.759 0.267 5e-24
O23147431 Polygalacturonase ADPG1 O no no 0.744 0.765 0.260 5e-22
Q7M1E7514 Polygalacturonase OS=Cham N/A no 0.783 0.675 0.273 2e-21
P35336467 Polygalacturonase OS=Acti N/A no 0.778 0.738 0.265 7e-21
P27644312 Polygalacturonase OS=Rhiz yes no 0.442 0.628 0.333 9e-21
P35338410 Exopolygalacturonase OS=Z N/A no 0.760 0.821 0.276 1e-20
P48978460 Polygalacturonase OS=Malu N/A no 0.731 0.704 0.282 2e-20
>sp|A7PZL3|PGLR_VITVI Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1 Back     alignment and function desciption
 Score =  419 bits (1077), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/409 (50%), Positives = 272/409 (66%), Gaps = 3/409 (0%)

Query: 35  RNDKISITDFGGVGDGKTLNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSFNLTSHM 94
           R    S+ DFGGVGDG+TLNTKAF++A+  +      GG  LYVP G +LTGSF+LTSH 
Sbjct: 59  RAHSASLVDFGGVGDGQTLNTKAFQDAVSELSKYGSEGGAQLYVPAGKWLTGSFSLTSHF 118

Query: 95  TLYLAKGAVIKATQDTWNWPLIAPLPSYGRGRERPGGRYMSFIHGDGLQDVVITGENGTI 154
           TL+L + AV+ A+QD   WP+I PLPSYGRGR+   GRY S I G  L DV+ITG+NGTI
Sbjct: 119 TLFLHRDAVLLASQDISQWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIITGDNGTI 178

Query: 155 DGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYV 214
           DGQG +WW  +    L +TRP LIE M S  I ISN+   NSP WN+HPVY  N++I+ +
Sbjct: 179 DGQGGLWWQRFHGGKLKYTRPYLIELMYSADIQISNLTLLNSPSWNVHPVYSRNILIQGI 238

Query: 215 TILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRR 274
           TILAP  SPNTDGI+PDS +N  IED YI +GDD VAVKSGWDEYGIAYG P+  + IRR
Sbjct: 239 TILAPVRSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRR 298

Query: 275 VTGSSPFSG-IAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYM 333
           +T  SP+S  IA+GSE SGG+++V AE I   N   GI +KT IGRGG++++I V  + M
Sbjct: 299 LTCISPYSAVIALGSEMSGGIQDVRAEDIVAINSESGIRIKTGIGRGGYVKDIYVRGMTM 358

Query: 334 ENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGIC 393
           +  +    + G+ G H D+ ++P A PV+ GI  +D+    V  +  ++G+ + PFTGIC
Sbjct: 359 KTMKWAFWMTGNYGSHADNHYDPKAFPVIQGINYRDMVAENVSMAARLEGIPSDPFTGIC 418

Query: 394 LSNINLQGVAGPTSPPLKCSDVSGSAYQVKPWPCSELSSS--QQTGACS 440
           +SN+ +   A     P  C+DV G +  V P PCS L     ++T  C+
Sbjct: 419 ISNVTIHLAAKAKKVPWTCTDVEGISSGVTPTPCSTLPDQGPEKTSLCN 467

Vitis vinifera (taxid: 29760)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|Q8RY29|ADPG2_ARATH Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2 Back     alignment and function description
>sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1 Back     alignment and function description
>sp|Q02096|PGLR_PERAE Polygalacturonase OS=Persea americana PE=2 SV=1 Back     alignment and function description
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1 Back     alignment and function description
>sp|Q7M1E7|PGLR2_CHAOB Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1 Back     alignment and function description
>sp|P35336|PGLR_ACTDE Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1 Back     alignment and function description
>sp|P27644|PGLR_RHIRD Polygalacturonase OS=Rhizobium radiobacter GN=pgl PE=2 SV=1 Back     alignment and function description
>sp|P35338|PGLR2_MAIZE Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1 Back     alignment and function description
>sp|P48978|PGLR_MALDO Polygalacturonase OS=Malus domestica PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query443
255537765446 Polygalacturonase precursor, putative [R 0.979 0.973 0.839 0.0
356567484442 PREDICTED: probable polygalacturonase-li 0.950 0.952 0.822 0.0
297742322447 unnamed protein product [Vitis vinifera] 0.995 0.986 0.793 0.0
356524183474 PREDICTED: probable polygalacturonase-li 0.950 0.888 0.817 0.0
224075086412 predicted protein [Populus trichocarpa] 0.930 1.0 0.871 0.0
356554060446 PREDICTED: probable polygalacturonase-li 0.995 0.988 0.789 0.0
15236625444 glycoside hydrolase family 28 protein / 0.981 0.979 0.746 0.0
297799608444 glycoside hydrolase family 28 protein [A 0.981 0.979 0.739 0.0
357494037450 Glycoside hydrolase family 28 protein [M 0.997 0.982 0.767 0.0
186701223444 glycoside hydrolase family 28 protein [A 0.981 0.979 0.735 0.0
>gi|255537765|ref|XP_002509949.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223549848|gb|EEF51336.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  730 bits (1885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/436 (83%), Positives = 394/436 (90%), Gaps = 2/436 (0%)

Query: 8   LSILLSYFNCFSLASVVTCSGIVPMRYRNDKISITDFGGVGDGKTLNTKAFREAIYRIQH 67
            SIL+ Y        V TCSGIVPMRYRNDKISI DFGGVGDGKT+NTKAFR AIYRIQH
Sbjct: 13  FSILMIYSTV--AHGVETCSGIVPMRYRNDKISIADFGGVGDGKTVNTKAFRAAIYRIQH 70

Query: 68  LRRSGGTLLYVPPGVYLTGSFNLTSHMTLYLAKGAVIKATQDTWNWPLIAPLPSYGRGRE 127
           L+R GGTLLY+PPGV+LTGSFNLTSHMTLYLA+GAVIKATQDTWNWPLIAPLPSYGRGRE
Sbjct: 71  LKRRGGTLLYIPPGVFLTGSFNLTSHMTLYLARGAVIKATQDTWNWPLIAPLPSYGRGRE 130

Query: 128 RPGGRYMSFIHGDGLQDVVITGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSII 187
           R GGRYMSFIHGDGL DVVITGENGTIDGQG IWWNMWRQRTL FTRPNL+EF+NSR II
Sbjct: 131 RLGGRYMSFIHGDGLHDVVITGENGTIDGQGDIWWNMWRQRTLQFTRPNLVEFLNSRGII 190

Query: 188 ISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGD 247
           ISNVIFQNSPFWNIHPVYCSNVVIR+VTILAP DSPNTDGIDPDSSSNVCIEDSYISTGD
Sbjct: 191 ISNVIFQNSPFWNIHPVYCSNVVIRFVTILAPHDSPNTDGIDPDSSSNVCIEDSYISTGD 250

Query: 248 DLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNV 307
           DLVAVKSGWDEYGIAYG PSS ITIRR+TGSSPF+GIAVGSETSGGVE+VLAE+INLY++
Sbjct: 251 DLVAVKSGWDEYGIAYGRPSSHITIRRITGSSPFAGIAVGSETSGGVEHVLAENINLYDM 310

Query: 308 GVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITI 367
           GVG+HVKTNIGRGGFIRNIT SDVYM+NARKGIKIAGDVGDHPDD +NPNALPVV GI  
Sbjct: 311 GVGLHVKTNIGRGGFIRNITFSDVYMKNARKGIKIAGDVGDHPDDNYNPNALPVVKGIIF 370

Query: 368 KDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGSAYQVKPWPC 427
           + VWG  V Q G IQGLK+SPFTGICLSNINL GV GP S P KCSDVSG+A +V P+PC
Sbjct: 371 RGVWGENVLQPGAIQGLKSSPFTGICLSNINLHGVPGPRSTPWKCSDVSGAALEVSPFPC 430

Query: 428 SELSSSQQTGACSNHF 443
           SEL+++ QTG+CS+H 
Sbjct: 431 SELATTHQTGSCSDHI 446

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356567484|ref|XP_003551949.1| PREDICTED: probable polygalacturonase-like [Glycine max] Back     alignment and taxonomy information
>gi|297742322|emb|CBI34471.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356524183|ref|XP_003530711.1| PREDICTED: probable polygalacturonase-like [Glycine max] Back     alignment and taxonomy information
>gi|224075086|ref|XP_002304552.1| predicted protein [Populus trichocarpa] gi|222841984|gb|EEE79531.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356554060|ref|XP_003545367.1| PREDICTED: probable polygalacturonase-like [Glycine max] Back     alignment and taxonomy information
>gi|15236625|ref|NP_194113.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] gi|4454051|emb|CAA23048.1| putative polygalacturonase [Arabidopsis thaliana] gi|7269231|emb|CAB81300.1| putative polygalacturonase [Arabidopsis thaliana] gi|17065242|gb|AAL32775.1| putative polygalacturonase [Arabidopsis thaliana] gi|22136230|gb|AAM91193.1| putative polygalacturonase [Arabidopsis thaliana] gi|332659410|gb|AEE84810.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297799608|ref|XP_002867688.1| glycoside hydrolase family 28 protein [Arabidopsis lyrata subsp. lyrata] gi|297313524|gb|EFH43947.1| glycoside hydrolase family 28 protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357494037|ref|XP_003617307.1| Glycoside hydrolase family 28 protein [Medicago truncatula] gi|355518642|gb|AET00266.1| Glycoside hydrolase family 28 protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|186701223|gb|ACC91250.1| glycoside hydrolase family 28 protein [Arabidopsis halleri] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query443
TAIR|locus:2128524444 AT4G23820 [Arabidopsis thalian 0.981 0.979 0.730 9e-180
TAIR|locus:2152980449 AT5G41870 [Arabidopsis thalian 0.977 0.964 0.685 6.3e-163
TAIR|locus:2098038471 AT3G62110 [Arabidopsis thalian 0.975 0.917 0.481 3.2e-113
TAIR|locus:2119156475 AT4G33440 [Arabidopsis thalian 0.936 0.873 0.513 1.2e-111
TAIR|locus:2086740455 AT3G16850 [Arabidopsis thalian 0.893 0.870 0.5 2e-102
TAIR|locus:2101313469 AT3G48950 [Arabidopsis thalian 0.893 0.844 0.477 3.8e-101
TAIR|locus:2082787476 AT3G61490 [Arabidopsis thalian 0.902 0.840 0.478 4.9e-101
TAIR|locus:2061396477 AT2G23900 [Arabidopsis thalian 0.968 0.899 0.464 2.8e-98
TAIR|locus:2117964495 AT4G23500 [Arabidopsis thalian 0.891 0.797 0.484 4.1e-97
TAIR|locus:504954979449 AT5G49215 [Arabidopsis thalian 0.957 0.944 0.445 7.8e-94
TAIR|locus:2128524 AT4G23820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1745 (619.3 bits), Expect = 9.0e-180, P = 9.0e-180
 Identities = 323/442 (73%), Positives = 371/442 (83%)

Query:     8 LSILLSYFNCF-----SLA-SVVTCSGIVPMRYRNDKISITDFGGVGDGKTLNTKAFREA 61
             LS+ +  F+C      SL  S  TCSGIVP+RYR DKISITDFGGVGDG+T+NTKAFR A
Sbjct:     4 LSVSIFLFSCLFVSSSSLGDSEATCSGIVPLRYRYDKISITDFGGVGDGRTVNTKAFRAA 63

Query:    62 IYRIQHLRRSGGTLLYVPPGVYLTGSFNLTSHMTLYLAKGAVIKATQDTWNWPLIAPLPS 121
             IYRIQHL+R GGTLLY+PPGVYLT SFNLTSHMTLYLAKGAVI+A QDTWNWPLI PLPS
Sbjct:    64 IYRIQHLKRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKGAVIRAVQDTWNWPLIDPLPS 123

Query:   122 YXXXXXXXXXXYMSFIHGDGLQDVVITGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFM 181
             Y          YMSFIHGDGL+DVVITG+NGTIDGQG +WWNMWR RTL +TRPNLIEF 
Sbjct:   124 YGRGRELPGGRYMSFIHGDGLRDVVITGQNGTIDGQGEVWWNMWRSRTLKYTRPNLIEFK 183

Query:   182 NSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDS 241
             +S+ IIISNVIFQNSPFWNIHPVYCSNVVI +VTILAP DSPNTDGIDPDSS NVCIEDS
Sbjct:   184 DSKEIIISNVIFQNSPFWNIHPVYCSNVVIHHVTILAPQDSPNTDGIDPDSSYNVCIEDS 243

Query:   242 YISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEH 301
             YISTGDDLVA+KSGWD+YGIAYG PSS ITIRR+TGSSPF+GIA+GSETSGG++N++AEH
Sbjct:   244 YISTGDDLVAIKSGWDQYGIAYGRPSSNITIRRITGSSPFAGIAIGSETSGGIKNIIAEH 303

Query:   302 INLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPV 361
             I L N+GVG+++KTNIGRGG+I+NI +SDVY++ A+ GIKIAGD GDHPD+ +NPNALPV
Sbjct:   304 ITLSNMGVGVNIKTNIGRGGYIKNIKISDVYVDTAKYGIKIAGDTGDHPDENYNPNALPV 363

Query:   362 VNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGSAYQ 421
             V GI IK+VWG  V+ +G IQGLK SPFTGICLS INL G    +    KCSDVSG++ +
Sbjct:   364 VKGIHIKNVWGVNVRNAGSIQGLKGSPFTGICLSEINLHGSLN-SYKTWKCSDVSGTSLK 422

Query:   422 VKPWPCSELSSSQQTGACSNHF 443
             V PWPCSEL ++  +  CS+ F
Sbjct:   423 VSPWPCSELRTTGGSNLCSSTF 444
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
TAIR|locus:2152980 AT5G41870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098038 AT3G62110 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119156 AT4G33440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086740 AT3G16850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101313 AT3G48950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082787 AT3G61490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061396 AT2G23900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117964 AT4G23500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504954979 AT5G49215 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query443
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 1e-56
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 4e-36
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 3e-32
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 8e-29
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 2e-26
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 2e-23
PLN03010409 PLN03010, PLN03010, polygalacturonase 2e-20
PLN02155394 PLN02155, PLN02155, polygalacturonase 8e-19
pfam12708222 pfam12708, Pectate_lyase_3, Pectate lyase superfam 4e-09
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information 
 Score =  195 bits (497), Expect = 1e-56
 Identities = 108/338 (31%), Positives = 152/338 (44%), Gaps = 30/338 (8%)

Query: 21  ASVVTCSGIVPMRYRNDKISITDFGGVGDGKTLNTKAFREAIYRIQHLRRSGGTLLYVPP 80
           +  +               S++D G VGDG T NT A + AI        +GG  + +P 
Sbjct: 69  SPAINIKTAATDT----AFSVSDDGAVGDGATDNTAAIQAAI---DACASAGGGTVLLPA 121

Query: 81  GVYLTGSFNLTSHMTLYLAKGAVIKATQDTWNWPLIA-------PLPSYGRGRERPGGRY 133
           G YL+G   L S++TL+LA+GA + A+ +  ++P              Y    +      
Sbjct: 122 GTYLSGPLFLKSNVTLHLAEGATLLASSNPKDYPSFTSRFNGNSGPYVYATDSDNAMISG 181

Query: 134 MSFIHGDGLQDVVITGEN-------GTIDGQ----GAIWWN--MWRQRTLP--FTRPNLI 178
                G     +     N       GTIDG     G  W++     +  +     RP  +
Sbjct: 182 EGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDKWFSGLGAVETRIGGKGVRPRTV 241

Query: 179 EFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCI 238
                R++++  +  +NSP W +HPV C N+  R +TI A     NTDG DP S SNV I
Sbjct: 242 VLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLI 300

Query: 239 EDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVL 298
           E     TGDD +A+KSG    G     PS  I IR    SS   G+ +GSE  GGV+N+ 
Sbjct: 301 EGCRFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNIT 360

Query: 299 AEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENA 336
            E   + N   G+ +KTN GRGG +RNI   D  M N 
Sbjct: 361 VEDCVMDNTDRGLRIKTNDGRGGGVRNIVFEDNKMRNV 398

Length = 542
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information
>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 443
PLN02793443 Probable polygalacturonase 100.0
PLN02155394 polygalacturonase 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN03010409 polygalacturonase 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.96
PLN03003456 Probable polygalacturonase At3g15720 99.89
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 99.89
PLN03010409 polygalacturonase 99.88
PLN02218431 polygalacturonase ADPG 99.88
PLN02793443 Probable polygalacturonase 99.88
PLN02155394 polygalacturonase 99.87
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.86
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.85
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.84
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.72
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.52
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.31
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.81
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.8
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.79
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.7
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 98.67
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.54
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.53
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.52
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.51
PLN02480343 Probable pectinesterase 98.49
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.41
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 98.4
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.35
smart00656190 Amb_all Amb_all domain. 98.31
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.26
smart00656190 Amb_all Amb_all domain. 98.14
PLN02497331 probable pectinesterase 98.09
PLN02176340 putative pectinesterase 98.07
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.05
PLN02773317 pectinesterase 98.0
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.97
PLN02634359 probable pectinesterase 97.94
PLN02682369 pectinesterase family protein 97.91
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.91
PLN02665366 pectinesterase family protein 97.89
PRK10531422 acyl-CoA thioesterase; Provisional 97.8
PLN02432293 putative pectinesterase 97.68
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.64
PLN02304379 probable pectinesterase 97.58
PLN02170529 probable pectinesterase/pectinesterase inhibitor 97.41
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 97.31
PLN02671359 pectinesterase 97.31
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 97.3
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 97.21
PLN02916502 pectinesterase family protein 97.14
PLN02506537 putative pectinesterase/pectinesterase inhibitor 97.13
PLN02201520 probable pectinesterase/pectinesterase inhibitor 97.11
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 97.07
PLN02217670 probable pectinesterase/pectinesterase inhibitor 97.06
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 97.04
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.02
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 97.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 96.97
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 96.93
PLN02416541 probable pectinesterase/pectinesterase inhibitor 96.93
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 96.92
PLN02484587 probable pectinesterase/pectinesterase inhibitor 96.91
PF1221867 End_N_terminal: N terminal extension of bacterioph 96.89
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 96.82
PLN02301548 pectinesterase/pectinesterase inhibitor 96.82
PLN02314586 pectinesterase 96.75
PLN02313587 Pectinesterase/pectinesterase inhibitor 96.69
PLN02197588 pectinesterase 96.66
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 96.62
PLN02488509 probable pectinesterase/pectinesterase inhibitor 96.57
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 95.57
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 94.69
PLN02773317 pectinesterase 94.66
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 93.7
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 93.27
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 91.87
PLN02480343 Probable pectinesterase 91.74
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 90.81
PLN02665366 pectinesterase family protein 90.61
PLN02682369 pectinesterase family protein 89.99
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 89.4
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 88.98
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 88.18
PLN02634359 probable pectinesterase 87.99
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 87.96
PF09251549 PhageP22-tail: Salmonella phage P22 tail-spike; In 87.76
PLN02176340 putative pectinesterase 87.0
PLN02432293 putative pectinesterase 86.92
PLN02671359 pectinesterase 86.89
PLN02916502 pectinesterase family protein 86.66
PLN02170529 probable pectinesterase/pectinesterase inhibitor 86.51
PLN02497331 probable pectinesterase 85.45
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 85.36
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 85.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 84.68
PLN02304379 probable pectinesterase 84.68
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 83.99
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 83.86
PRK10531422 acyl-CoA thioesterase; Provisional 83.48
PLN02201520 probable pectinesterase/pectinesterase inhibitor 83.24
PLN02301548 pectinesterase/pectinesterase inhibitor 83.03
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 82.09
KOG1777 625 consensus Putative Zn-finger protein [General func 81.64
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 80.83
>PLN02793 Probable polygalacturonase Back     alignment and domain information 
Probab=100.00  E-value=1.2e-71  Score=557.53  Aligned_cols=364  Identities=28%  Similarity=0.428  Sum_probs=318.7

Q ss_pred             CCCCceEEEeeccccCCCcchhHHHHHHHHH-HhhhhccCCCeEEEECCC-ceEEEEeEe----ccccEEEEccCcEEEe
Q 013402           33 RYRNDKISITDFGGVGDGKTLNTKAFREAIY-RIQHLRRSGGTLLYVPPG-VYLTGSFNL----TSHMTLYLAKGAVIKA  106 (443)
Q Consensus        33 ~~~~~~~nV~dyGa~gDg~tddt~aiq~Ai~-~~~~~~~~gg~~V~ip~G-~Y~~~~l~l----~s~~tl~~~~ga~l~~  106 (443)
                      +..++++||+||||+|||.+|||+|||+||+ +|+   +.+|++|+||+| +|++++|.|    ||+++|+++  ++|++
T Consensus        47 ~~~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~---~~ggg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~--g~l~~  121 (443)
T PLN02793         47 PRSERVLHVGDFGAKGDGVTDDTQAFKEAWKMACS---SKVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQIS--GTIIA  121 (443)
T ss_pred             CCCceEEEhhhcccCCCCCCccHHHHHHHHHHHhc---cCCCCEEEECCCceEEEEEEEECCccCCCeEEEEE--EEEEc
Confidence            3355899999999999999999999999999 565   678899999999 599999999    899999997  89999


Q ss_pred             cCCCCCCCCcCCCCCCCcccccCCCcceeeEEecCeeeeEEeccCcEEeCCCchhhhhhcc---CCCCCCCCeeEEEEee
Q 013402          107 TQDTWNWPLIAPLPSYGRGRERPGGRYMSFIHGDGLQDVVITGENGTIDGQGAIWWNMWRQ---RTLPFTRPNLIEFMNS  183 (443)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~~G~idG~G~~~~~~~~~---~~~~~~~~~~i~~~~~  183 (443)
                      +.++++|+..               ..+.++++.+++|++|+|. |+|||+|+.||+....   ......||++|+|.+|
T Consensus       122 ~~d~~~w~~~---------------~~~~~i~~~~~~ni~ItG~-G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~  185 (443)
T PLN02793        122 PKDPDVWKGL---------------NPRKWLYFHGVNHLTVEGG-GTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKC  185 (443)
T ss_pred             cCChHHccCC---------------CCceEEEEecCceEEEEec-eEEECCCcccccccccccCCCCccCCceEEEEEee
Confidence            9998888642               1236788999999999998 9999999999975321   1123458999999999


Q ss_pred             cceEEEeEEEecCCCceEEeeeeeeEEEEeEEEECCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCcccccccc
Q 013402          184 RSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAY  263 (443)
Q Consensus       184 ~nv~I~~v~i~n~~~~~i~~~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~  263 (443)
                      +|++|++++++|+|.|++++..|++|+|++++|.++..++|+||||+.+|+||+|+||+|.++||||++|++        
T Consensus       186 ~nv~v~gitl~nSp~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~--------  257 (443)
T PLN02793        186 KDLRVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGN--------  257 (443)
T ss_pred             ccEEEECeEEEcCCCeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCC--------
Confidence            999999999999999999999999999999999998889999999999999999999999999999999986        


Q ss_pred             CCCcccEEEEEEEEeCCCceEEEccc----cCCcEEEEEEEeeEEeCCceeEEEEeecCCCceEEEEEEEeEEEcccCee
Q 013402          264 GHPSSGITIRRVTGSSPFSGIAVGSE----TSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKG  339 (443)
Q Consensus       264 ~~~~~ni~i~n~~~~~~~~gi~igs~----~~~~v~nI~i~n~~~~~~~~gi~i~s~~~~~g~v~nI~~~ni~~~~~~~~  339 (443)
                         ++||+|+||+|.. ++||+|||+    +.+.|+||+|+||+|.++.+|++||+|.+++|.|+||+|+|++|+++.+|
T Consensus       258 ---s~nI~I~n~~c~~-GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~p  333 (443)
T PLN02793        258 ---SSRIKIRNIACGP-GHGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNP  333 (443)
T ss_pred             ---cCCEEEEEeEEeC-CccEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCce
Confidence               8999999999965 789999997    34679999999999999999999999998889999999999999999999


Q ss_pred             EEEEcccCCCCCCCCCCCCCCeEEeEEEEeEEEecc-CeeEEEEecCCCCeeeEEEEeEEEEeeCCCCCCCeeeeecccC
Q 013402          340 IKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKV-QQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGS  418 (443)
Q Consensus       340 i~i~~~~~~~~~~~~~~~~~~~i~nIt~~nI~~~~~-~~~~~i~g~~~~~i~ni~~~nv~~~~~~~~~~~~~~c~~v~~~  418 (443)
                      |.|++.|.........+...+.|+||+|+||+++.. ..++.|.|.++.||+||+|+||+++...+. ...+.|.|+++.
T Consensus       334 I~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~-~~~~~C~n~~g~  412 (443)
T PLN02793        334 IIIDQYYCDSRKPCANQTSAVKVENISFVHIKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGD-FTESFCWEAYGS  412 (443)
T ss_pred             EEEEeeecCCCCCCCCCCCCeEEEeEEEEEEEEEEcccccEEEEeCCCCCEeeEEEEeeEEEecCCC-CCCcEEEccEEe
Confidence            999998865222211222235899999999999875 357889999999999999999999987655 346889999998


Q ss_pred             cC-cccCCCCCCC
Q 013402          419 AY-QVKPWPCSEL  430 (443)
Q Consensus       419 ~~-~~~p~~~~~~  430 (443)
                      .. .+.|+||++.
T Consensus       413 ~~~~~~p~~C~~~  425 (443)
T PLN02793        413 SSGQVYPPPCFSD  425 (443)
T ss_pred             ECCeEcCCccccC
Confidence            75 4778899864

>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query443
3jur_A448 The Crystal Structure Of A Hyperthermoactive Exopol 5e-40
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 1e-18
2uve_A608 Structure Of Yersinia Enterocolitica Family 28 Exop 2e-15
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 6e-07
1czf_A362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 2e-06
1nhc_A336 Structural Insights Into The Processivity Of Endopo 9e-06
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 9e-06
2iq7_A339 Crystal Structure Of The Polygalacturonase From Col 9e-05
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 Back     alignment and structure 
Iteration: 1

 Score =  161 bits (408), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 124/409 (30%), Positives = 193/409 (47%), Gaps = 68/409 (16%)
Query: 38  KISITDFGGVGDGKTLNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSFNLTSHMTLY 97
           ++++ DFG  GDG+T  +++F+ AI   + L + GG  L VP GV+LTG  +L S++ L+
Sbjct: 27  EVNLLDFGARGDGRTDCSESFKRAI---EELSKQGGGRLIVPEGVFLTGPIHLKSNIELH 83
Query: 98  LAKGAVIKATQDTWNW-PLIAPLPSYXXXXXXXXXXYMSFIHGDGLQDVVITGENGTIDG 156
           +     IK   D   + P++                Y   ++    ++V ITG +G +DG
Sbjct: 84  VK--GTIKFIPDPERYLPVV-----LTRFEGIELYNYSPLVYALDCENVAITG-SGVLDG 135
Query: 157 QG--AIWWNMWR-------------------------QRTLP----------FTRPNLIE 179
                 WW  W+                         +R  P          + RP+ ++
Sbjct: 136 SADNEHWWP-WKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRPSFVQ 194
Query: 180 FMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIE 239
           F   R++++  V   NSP W IHPV   NV+IR + I   +  PN DGIDP+S   + IE
Sbjct: 195 FYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEI--SSTGPNNDGIDPESCKYMLIE 252
Query: 240 DSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRR--VTGSSPFSGIAVGSETSGGVENV 297
                TGDD V +KSG D  G   G PS  I +R   V   +   G+ +GSE SGGV NV
Sbjct: 253 KCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGVRNV 312
Query: 298 LAEHINLYNVGVGIHVKTNIGRGGFIRNITVSD-----VYMENARKGIKIAGDVGDHPDD 352
           +A +    NV   + +KTN  RGG++ NI   D     V  E  R  ++   + G++   
Sbjct: 313 VARNNVYMNVERALRLKTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRYDNEEGEY--- 369
Query: 353 KFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQG 401
                 LPVV  + +K++  T  + +  I+GL+N     I +S+  ++G
Sbjct: 370 ------LPVVRSVFVKNLKATGGKYAVRIEGLENDYVKDILISDTIIEG 412
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase Length = 608 Back     alignment and structure
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query443
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 1e-135
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 1e-129
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 1e-124
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 8e-82
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 9e-79
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 1e-73
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 4e-73
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 2e-71
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 3e-63
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 2e-60
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 2e-59
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 3e-44
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 3e-42
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 4e-38
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 5e-38
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 2e-34
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 3e-13
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 8e-08
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 1e-04
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 6e-04
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
 Score =  394 bits (1013), Expect = e-135
 Identities = 118/428 (27%), Positives = 190/428 (44%), Gaps = 56/428 (13%)

Query: 29  IVPMRYRNDKISITDFGGVGDGKTLNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSF 88
           +   +  + ++++ DFG  GDG+T  +++F+ AI   + L + GG  L VP GV+LTG  
Sbjct: 18  VREPQIPDREVNLLDFGARGDGRTDCSESFKRAI---EELSKQGGGRLIVPEGVFLTGPI 74

Query: 89  NLTSHMTLYLAKGAVIKATQDTWNWPLIAPLPSYGRGRERPGGRYMSFIHGDGLQDVVIT 148
           +L S++ L++          + +  P++       R        Y   ++    ++V IT
Sbjct: 75  HLKSNIELHVKGTIKFIPDPERY-LPVV-----LTRFEGIELYNYSPLVYALDCENVAIT 128

Query: 149 GENGTIDGQGA--IWWNMWRQRTL----------------------------------PF 172
           G  G +DG      WW    ++                                     +
Sbjct: 129 GS-GVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHY 187

Query: 173 TRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDS 232
            RP+ ++F   R++++  V   NSP W IHPV   NV+IR + I +    PN DGIDP+S
Sbjct: 188 LRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPES 245

Query: 233 SSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRR--VTGSSPFSGIAVGSET 290
              + IE     TGDD V +KSG D  G   G PS  I +R   V   +   G+ +GSE 
Sbjct: 246 CKYMLIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEM 305

Query: 291 SGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKG-IKIAGDVGDH 349
           SGGV NV+A +    NV   + +KTN  RGG++ NI   D    N  +  I+I     + 
Sbjct: 306 SGGVRNVVARNNVYMNVERALRLKTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRYDNE 365

Query: 350 PDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPP 409
             +      LPVV  + +K++  T  + +  I+GL+N     I +S+  ++G        
Sbjct: 366 EGE-----YLPVVRSVFVKNLKATGGKYAVRIEGLENDYVKDILISDTIIEGAKISVLLE 420

Query: 410 LKCSDVSG 417
                +  
Sbjct: 421 FGQLGMEN 428
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Length = 514 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query443
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 100.0
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 100.0
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 100.0
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 100.0
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 100.0
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.92
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.91
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.9
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.9
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.9
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.89
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.88
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.88
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.88
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.88
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.87
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.75
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.75
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.63
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.59
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.44
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.43
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.4
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.33
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.32
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.24
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.23
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.71
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.71
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.66
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.65
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.64
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.57
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 98.44
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 98.44
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.4
2x3h_A 542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 98.4
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.4
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 98.37
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.36
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 98.34
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.08
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.07
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 98.06
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 98.04
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 98.04
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 98.02
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.96
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.92
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.91
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.9
2inu_A410 Insulin fructotransferase; right-handed parallel b 97.86
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.84
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.76
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 97.69
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 97.62
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 97.21
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 96.34
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 95.65
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 95.62
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 95.37
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 95.03
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 94.76
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 94.41
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 92.88
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 92.52
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 92.24
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 91.56
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 83.18
3ju4_A 670 Endo-N-acetylneuraminidase; endonf, polysia, high- 83.06
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 80.65
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=6.4e-69  Score=542.61  Aligned_cols=362  Identities=33%  Similarity=0.543  Sum_probs=318.4

Q ss_pred             cCCCCCceEEEeeccccCCCcchhHHHHHHHHHHhhhhccCCCeEEEECCCceEEEEeEeccccEEEEccCcEEEecCCC
Q 013402           31 PMRYRNDKISITDFGGVGDGKTLNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSFNLTSHMTLYLAKGAVIKATQDT  110 (443)
Q Consensus        31 ~~~~~~~~~nV~dyGa~gDg~tddt~aiq~Ai~~~~~~~~~gg~~V~ip~G~Y~~~~l~l~s~~tl~~~~ga~l~~~~~~  110 (443)
                      ++..++++++|++|||+|||.+|||+|||+||++|+   +.+|++|+||+|+|++++|.|+|+++|+++  |+|+++.++
T Consensus        20 ~p~~~~~~~~v~~~GA~gdg~tddt~Aiq~Ai~~c~---~~ggg~v~vP~G~yl~~~l~l~s~v~l~l~--gtL~~s~d~   94 (448)
T 3jur_A           20 EPQIPDREVNLLDFGARGDGRTDCSESFKRAIEELS---KQGGGRLIVPEGVFLTGPIHLKSNIELHVK--GTIKFIPDP   94 (448)
T ss_dssp             CCCCCSCEEEGGGGTCCCEEEEECHHHHHHHHHHHH---HHTCEEEEECSSEEEESCEECCTTEEEEES--SEEEECCCG
T ss_pred             CCCCCCcEEEEEecccCCCCCeecHHHHHHHHHhhh---hcCCeEEEECCCcEEEeeeEeCCCcEEEEE--EEEEecCCH
Confidence            334567799999999999999999999999999986   568999999999999999999999999998  999999999


Q ss_pred             CCC-CCcCCCCCCCcccccCCCcceeeEEecCeeeeEEeccCcEEeCCC--chhhhhhccC-------------------
Q 013402          111 WNW-PLIAPLPSYGRGRERPGGRYMSFIHGDGLQDVVITGENGTIDGQG--AIWWNMWRQR-------------------  168 (443)
Q Consensus       111 ~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~~G~idG~G--~~~~~~~~~~-------------------  168 (443)
                      ++| |..   ...++|.+.  ..+.+||++.+++||+|+|. |+|||+|  +.||+.....                   
T Consensus        95 ~~y~p~~---~~~~~G~~~--~~~~~lI~~~~~~ni~ItG~-GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~l~  168 (448)
T 3jur_A           95 ERYLPVV---LTRFEGIEL--YNYSPLVYALDCENVAITGS-GVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLK  168 (448)
T ss_dssp             GGGCSCE---EEEETTEEE--EESCCSEEEESCEEEEEESS-CEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHHHH
T ss_pred             HHhCccc---ccccccccc--cCccceEEEeCcEeeEEEEe-EEEECCCCchhhhhhcccccccccccccccccchhhhh
Confidence            998 432   123344332  24567899999999999998 9999999  8899753210                   


Q ss_pred             ---------------CCCCCCCeeEEEEeecceEEEeEEEecCCCceEEeeeeeeEEEEeEEEECCCCCCCCCeecccCC
Q 013402          169 ---------------TLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSS  233 (443)
Q Consensus       169 ---------------~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s  233 (443)
                                     .....||++|.|.+|+|++|+|++++|+++|++++..|++++|++++|.++  ++|+|||++.+|
T Consensus       169 ~~~~~~~p~~~~~~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s  246 (448)
T 3jur_A          169 EMAERGTPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESC  246 (448)
T ss_dssp             HHHHHTCCGGGCBCSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSC
T ss_pred             hhhcccCcchhhhccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCC
Confidence                           124579999999999999999999999999999999999999999999986  689999999999


Q ss_pred             ccEEEEeeEEecCCceEEEccCccccccccCCCcccEEEEEEEEeC--CCceEEEccccCCcEEEEEEEeeEEeCCceeE
Q 013402          234 SNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSS--PFSGIAVGSETSGGVENVLAEHINLYNVGVGI  311 (443)
Q Consensus       234 ~nv~I~n~~i~~gdD~i~i~sg~~~~g~~~~~~~~ni~i~n~~~~~--~~~gi~igs~~~~~v~nI~i~n~~~~~~~~gi  311 (443)
                      +||+|+||+|.++||||+++++++.+|...+.|++||+|+||+|++  +++||+|||+..++++||+|+||+|.++.+|+
T Consensus       247 ~nV~I~n~~i~~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~~~~v~nV~v~n~~~~~t~~Gi  326 (448)
T 3jur_A          247 KYMLIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGVRNVVARNNVYMNVERAL  326 (448)
T ss_dssp             EEEEEESCEEEESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSSCTTCEEEEEEESCEEESCSEEE
T ss_pred             cCEEEEeeEEEeCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCcccCcEEEEEEEEEEEecccceE
Confidence            9999999999999999999999998888888999999999999944  35599999999999999999999999999999


Q ss_pred             EEEeecCCCceEEEEEEEeEEEcccCeeE-EEEcccCCCCCCCCCCCCCCeEEeEEEEeEEEeccCeeEEEEecCCCCee
Q 013402          312 HVKTNIGRGGFIRNITVSDVYMENARKGI-KIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFT  390 (443)
Q Consensus       312 ~i~s~~~~~g~v~nI~~~ni~~~~~~~~i-~i~~~~~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~i~g~~~~~i~  390 (443)
                      +||++.+++|.|+||+|+|++|+++.+++ .|++.|...     .+...+.|+||+|+||+++....++.|.|+++.+|+
T Consensus       327 rIKt~~g~gG~v~nI~f~ni~m~~v~~~~i~I~~~Y~~~-----~~~~~~~i~nI~~~NI~~t~~~~~i~i~g~~~~p~~  401 (448)
T 3jur_A          327 RLKTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRYDNE-----EGEYLPVVRSVFVKNLKATGGKYAVRIEGLENDYVK  401 (448)
T ss_dssp             EEECCTTTCSEEEEEEEESCEEEEESSEEEEEESCGGGC-----CCSCCCEEEEEEEESCEEEECSEEEEEECBTTBCEE
T ss_pred             EEEEEcCCCceEeeEEEEEEEEECCccccEEEEeeccCC-----CCCCCceEEEEEEEeEEEEecceEEEEEeCCCCCEe
Confidence            99999888899999999999999999988 999988653     122346899999999999987789999999999999


Q ss_pred             eEEEEeEEEEeeCCCCCCCeeeee
Q 013402          391 GICLSNINLQGVAGPTSPPLKCSD  414 (443)
Q Consensus       391 ni~~~nv~~~~~~~~~~~~~~c~~  414 (443)
                      ||+|+||+++..+.    ...|.+
T Consensus       402 ~I~~~nv~i~~~~~----~~~~~~  421 (448)
T 3jur_A          402 DILISDTIIEGAKI----SVLLEF  421 (448)
T ss_dssp             EEEEEEEEEESCSE----EEEEEE
T ss_pred             eEEEEEEEEEcccc----ceeEec
Confidence            99999999997543    245555
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 443
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 2e-70
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 3e-56
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 2e-53
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 2e-50
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 5e-50
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 1e-49
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 3e-49
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 8e-44
d1o88a_353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 6e-27
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]

 Score =  225 bits (574), Expect = 2e-70
 Identities = 88/384 (22%), Positives = 154/384 (40%), Gaps = 42/384 (10%)

Query: 47  VGDGKTLNTKAFREAIYRIQHLRRSGGTLLYVPPG---VYLTGSFNLTSHMTLYLAKGAV 103
           +    +  T   ++A+         G  +  +  G   V+L+G  +L S ++L + KG  
Sbjct: 18  LKADSSTATSTIQKALNNCD----QGKAV-RLSAGSTSVFLSGPLSLPSGVSLLIDKGVT 72

Query: 104 IKATQDTWNWPLIAPLPSYGRGRERPGGRYMSFIHGDGLQDVVITGENGTIDGQGAIWWN 163
           ++A  +  ++      PS     ++ G    +FI      +  I G  GTIDGQG +   
Sbjct: 73  LRAVNNAKSFE---NAPSSCGVVDKNGKGCDAFITAVSTTNSGIYG-PGTIDGQGGVKLQ 128

Query: 164 MWRQ-----------RTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIR 212
             +            + L    P LI+   S++  + NV   NSP +++           
Sbjct: 129 DKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAW 188

Query: 213 YVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITI 272
             TI  P+ + NTDGIDP SS N+ I  S I+TGDD VA+K+            +  I+I
Sbjct: 189 KTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGR------AETRNISI 242

Query: 273 RRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVY 332
                             + GV NV  + + +     G+ +K++    G +  +  S+V 
Sbjct: 243 LHND--FGTGHGMSIGSETMGVYNVTVDDLKMNGTTNGLRIKSDKSAAGVVNGVRYSNVV 300

Query: 333 MENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGI 392
           M+N  K I I     D   +K   + +P  + IT KDV     +   ++ G        +
Sbjct: 301 MKNVAKPIVI-----DTVYEKKEGSNVPDWSDITFKDVTSE-TKGVVVLNGENAKKPIEV 354

Query: 393 CLSNINLQGVAGPTSPPLKCSDVS 416
            + N+ L   +       +  +V+
Sbjct: 355 TMKNVKLTSDST-----WQIKNVN 373
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query443
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.87
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.86
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.86
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.85
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.83
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.82
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.75
d1h80a_464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 99.7
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.56
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.79
d1ofla_481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.69
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 98.26
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 98.12
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 98.11
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 98.11
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.91
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.66
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.47
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.46
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.4
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.37
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.32
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.25
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 97.17
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.16
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 97.03
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.12
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 95.82
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 92.82
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 90.78
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 85.54
d1ofla_481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 82.32
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]

Probab=100.00  E-value=1.2e-60  Score=473.34  Aligned_cols=355  Identities=26%  Similarity=0.371  Sum_probs=303.2

Q ss_pred             ccCCCCCceEEEeeccccCCCcchhHHHHHHHHHHhhhhccCCCeEEEECCCc---eEEEEeEeccccEEEEccCcEEEe
Q 013402           30 VPMRYRNDKISITDFGGVGDGKTLNTKAFREAIYRIQHLRRSGGTLLYVPPGV---YLTGSFNLTSHMTLYLAKGAVIKA  106 (443)
Q Consensus        30 ~~~~~~~~~~nV~dyGa~gDg~tddt~aiq~Ai~~~~~~~~~gg~~V~ip~G~---Y~~~~l~l~s~~tl~~~~ga~l~~  106 (443)
                      +++|..|..+.+..     ++.+|||+|||+|||+|+     +||+|+||||+   |+.++|.|||+++|++++||+|++
T Consensus         6 ~~~~~~~~~~~~~~-----~~~~~~T~aIq~AIdac~-----~Gg~V~iP~G~~~vyltg~i~LkSnv~L~l~~ga~L~~   75 (376)
T d1bhea_           6 VSEPKTPSSCTTLK-----ADSSTATSTIQKALNNCD-----QGKAVRLSAGSTSVFLSGPLSLPSGVSLLIDKGVTLRA   75 (376)
T ss_dssp             CCCCCCCCEEEEEE-----CCSSBCHHHHHHHHTTCC-----TTCEEEEECSSSSEEEESCEECCTTCEEEECTTCEEEE
T ss_pred             cCCCCCCCceEeEC-----CCCChhHHHHHHHHHHCC-----CCCEEEEcCCCcceEEEecEEECCCCEEEEeCCEEEEE
Confidence            55666666666644     367899999999999983     57899999998   888999999999999999999999


Q ss_pred             cCCCCCCCCcCCCCCCCcccccCCCcceeeEEecCeeeeEEeccCcEEeCCCch--------hhhhhc---cCCCCCCCC
Q 013402          107 TQDTWNWPLIAPLPSYGRGRERPGGRYMSFIHGDGLQDVVITGENGTIDGQGAI--------WWNMWR---QRTLPFTRP  175 (443)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~~G~idG~G~~--------~~~~~~---~~~~~~~~~  175 (443)
                      +.+.++|+..+.   ...+....+..+.++|.+.+++||+|+|. |+|||+|..        ||....   .......||
T Consensus        76 s~d~~~y~~~~~---~~~~~~~~~~~~~~~i~~~~~~Ni~ItG~-G~IDG~G~~~~~~~~~~~~~~~~~~~~~~~~~~rP  151 (376)
T d1bhea_          76 VNNAKSFENAPS---SCGVVDKNGKGCDAFITAVSTTNSGIYGP-GTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTP  151 (376)
T ss_dssp             CSCSGGGBSSTT---CSSCEESCSCCBCCSEEEESCBSCEEECS-SEEECCTTSCCSSSSSCTTHHHHHHHHHTCEECCC
T ss_pred             cCCHHHcccccc---eeeeEeccCcccceeEEecCcceEEEEeC-cEEecccceeecCCccchhccccccccccCCCCCC
Confidence            999999976532   22222223344568899999999999998 999999874        454211   123345789


Q ss_pred             eeEEEEeecceEEEeEEEecCCCceEEeeeeeeEEEEeEEEECCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccC
Q 013402          176 NLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSG  255 (443)
Q Consensus       176 ~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~~~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~sg  255 (443)
                      ++|.|.+|+|++|+|++++|++.|++++..|++++|+|++|.++...+|+|||++.+|+||+|+||+|+++||||++|++
T Consensus       152 ~~i~~~~~~nv~i~~iti~ns~~~~~~~~~~~~v~i~n~~I~~~~~~~NtDGidi~~s~nv~I~n~~i~~gDD~i~~ks~  231 (376)
T d1bhea_         152 RLIQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAY  231 (376)
T ss_dssp             CSEEEESCEEEEEEEEEEECCSSCSEEEESCEEEEEEEEEEECCTTCSSCCSEEEESCEEEEEESCEEECSSCSEEEEEC
T ss_pred             eEEEEEecccEEEEeeEEecCCceEEEEeCCceEEEEeEeccCCccCCCcceeeccccceEEEEeceeecCCCceeeecc
Confidence            99999999999999999999999999999999999999999998888999999999999999999999999999999997


Q ss_pred             ccccccccCCCcccEEEEEEEEeCCCceEEEccccCCcEEEEEEEeeEEeCCceeEEEEeecCCCceEEEEEEEeEEEcc
Q 013402          256 WDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMEN  335 (443)
Q Consensus       256 ~~~~g~~~~~~~~ni~i~n~~~~~~~~gi~igs~~~~~v~nI~i~n~~~~~~~~gi~i~s~~~~~g~v~nI~~~ni~~~~  335 (443)
                      ..      ..+++||+|+||+|.+ ++|++||++.. +++||+|+||+|.++.+|++||++++++|.|+||+|||+++++
T Consensus       232 ~~------~~~~~ni~i~n~~~~~-~~g~~iGs~~~-~v~nv~i~n~~~~~~~~g~~Iks~~~~gG~v~nI~f~ni~~~~  303 (376)
T d1bhea_         232 KG------RAETRNISILHNDFGT-GHGMSIGSETM-GVYNVTVDDLKMNGTTNGLRIKSDKSAAGVVNGVRYSNVVMKN  303 (376)
T ss_dssp             TT------SCCEEEEEEEEEEECS-SSCEEEEEEES-SEEEEEEEEEEEESCSEEEEEECCTTTCCEEEEEEEEEEEEES
T ss_pred             cC------CCCcceEEEEeeEEec-CCCceeccccC-CEEEEEEEeeeEcCCCceEEEEecCCCccEEEEEEEEeEEEec
Confidence            43      3468999999999977 78999999864 5999999999999999999999999888999999999999999


Q ss_pred             cCeeEEEEcccCCCCCCCCCCCCCCeEEeEEEEeEEEeccCeeEEEEecCCCCeeeEEEEeEEEEeeCCCCCCCeeeeec
Q 013402          336 ARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDV  415 (443)
Q Consensus       336 ~~~~i~i~~~~~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~i~g~~~~~i~ni~~~nv~~~~~~~~~~~~~~c~~v  415 (443)
                      ++.||.|++.|....     +...+.++||+|+||+++.. .++.+.|.++.+|+||+|+||+++..     ..+.|.||
T Consensus       304 v~~pi~i~~~y~~~~-----~~~~~~i~nIt~~Ni~~~~~-~~~~l~g~~~~~~~~v~~~nv~i~~~-----~~~~~~nv  372 (376)
T d1bhea_         304 VAKPIVIDTVYEKKE-----GSNVPDWSDITFKDVTSETK-GVVVLNGENAKKPIEVTMKNVKLTSD-----STWQIKNV  372 (376)
T ss_dssp             CSEEEEEETTSSCCC-----CCCCCEEEEEEEEEEEECSC-CEEEEECTTCSSCEEEEEEEEECCTT-----CEEEEESE
T ss_pred             cCccEEEEeecCCCC-----CCCCCEEeeEEEEeEEEecc-eeEEEEcCCCCCceeEEEEeEEEEcC-----CCCEEEee
Confidence            999999998876422     23346899999999999765 57889999999999999999999653     35889998


Q ss_pred             cc
Q 013402          416 SG  417 (443)
Q Consensus       416 ~~  417 (443)
                      .-
T Consensus       373 ~~  374 (376)
T d1bhea_         373 NV  374 (376)
T ss_dssp             EE
T ss_pred             ee
Confidence            53
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure