Citrus Sinensis ID: 013465

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440--
MMMNLIWIALQKVFLLSPRPLKTFAKERLFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLESNGRLTNLINGNGKPSIKSSSDTVSDS
cccHHHHHHHHHcccccHHHHHHHHHcccEEEEEEcccccccccHHHHcccccHHHHHHHHHHcccEEEccccHHHHHHccccccccccccccccccccEEEEEccccccccccHHHHHHHHHHHHccccccccccccccccccccccccEEEccccHHHHHHHHHHccccccEEEEEEEccccccccHHHHHHHHHHccccEEcHHHHHHHHHHccccEEEEEEEccccccccEEEEEEEEcccccEEEEEEEcccccccccEEEEccccccHHcccccccccHHHHHHHHHHHHHHccEEEEEEcccccccccHHHHHHHHHHHHcccccHHHHHHccccccccHHHHHHHHHHHcccccEEEcccccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccc
cccccccccccccccccHHHHHHHHHccccEEEEccccccccEEEEEEHHHccHHHHHHHHHHEccccEEEEcHHHHHHccccEccccccccccccEEccEEEcccccccccccHHHHHHHHHHHHcccccHHHEEEEEEEEEEEccccHHHccccHHHHHHHHHHHcccccEEEEEEEEEccccccccHHHHHHHHHcccEEEEHHHHHHHHHHHcccEEEEEEEccccccccEEEEEEEEcccccEEEEEEEccccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHHHHHHccccHHHHHHHccccHcHHHHcHHHHHHHHHcccEEEEEEccccHEEccccccEEEEEcccEEEcccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccc
MMMNLIWIALQKVfllsprplktfakERLFVVVvddedreneGDLIMAAQLATPEAMAFIVKHGTGIVcvsmkgedlerldlplmvaqkeNDEKLCTAFTVtvdakhgtttgvsarDRATTVLTLasrdskpgdfnrpghifplkyreggvlkraghteaSVDLAVLAGFDPAAVLCEvvdddgsmarlPKLREFAKRENLKIISIADLIRYRRKRdklvdrssaariptmwgpfTAYCYRSILDGIEHIAMvkgdigdgqDILVRVHSecltgdifgsarcdcGDQLALAMQQIEAAGRGVLVYLRghegrgiglgHKLRaynlqddgrdtveaneelglpvdsreygigAQMLRDLGVRTMklmtnnpskyvglkgyglavagrvplitpikKENKRYLETKRAKMghiyglesngrltnlingngkpsiksssdtvsds
MMMNLIWIALQKVFLLSPRPLKTFAKERLFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVtvdakhgtttgvsardraTTVLTlasrdskpgdfnrpghifPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKlrefakrenlkiisiadliryrrkrdklvdrssaariptmwgpfTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANeelglpvdsreygiGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVagrvplitpikkenkrylETKRAKMGHIYGLESNGRLTNLingngkpsiksssdtvsds
MMMNLIWIALQKVFLLSPRPLKTFAKerlfvvvvddedrenegdLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLESNGRLTNLINGNGKPsiksssdtvsds
***NLIWIALQKVFLLSPRPLKTFAKERLFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTL***********RPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDG********ELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLESNGRLTNL*******************
*************FLLSPRPLKTFAKERLFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLESN*************************
MMMNLIWIALQKVFLLSPRPLKTFAKERLFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLESNGRLTNLINGNGK*************
****LIWIALQKVFLLSPRPLKTFAKERLFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLE***************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMMNLIWIALQKVFLLSPRPLKTFAKERLFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLESNGRLTNLINGNGKPSIKSSSDTVSDS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query442 2.2.26 [Sep-21-2011]
P47924543 Riboflavin biosynthesis p yes no 0.893 0.727 0.878 0.0
Q0AXM5398 Riboflavin biosynthesis p yes no 0.864 0.959 0.611 1e-132
Q5YTP3414 Riboflavin biosynthesis p yes no 0.855 0.913 0.607 1e-129
A8LY38420 Riboflavin biosynthesis p yes no 0.857 0.902 0.585 1e-129
A4X639400 Riboflavin biosynthesis p yes no 0.861 0.952 0.584 1e-129
C0ZZE5424 Riboflavin biosynthesis p yes no 0.855 0.891 0.598 1e-128
B1MCA4417 Riboflavin biosynthesis p yes no 0.855 0.906 0.601 1e-128
O66679406 Riboflavin biosynthesis p yes no 0.861 0.938 0.579 1e-127
Q0S0K2417 Riboflavin biosynthesis p yes no 0.855 0.906 0.595 1e-127
Q5WH08397 Riboflavin biosynthesis p yes no 0.861 0.959 0.574 1e-127
>sp|P47924|RIBBA_ARATH Riboflavin biosynthesis protein ribBA, chloroplastic OS=Arabidopsis thaliana GN=RIBBA PE=2 SV=2 Back     alignment and function desciption
 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/395 (87%), Positives = 370/395 (93%)

Query: 30  FVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQK 89
            VVVVDDEDRENEGDL+MAAQLATPEAMAFIV+HGTGIVCVSMK +DLERL LPLMV QK
Sbjct: 143 LVVVVDDEDRENEGDLVMAAQLATPEAMAFIVRHGTGIVCVSMKEDDLERLHLPLMVNQK 202

Query: 90  ENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREG 149
           EN+EKL TAFTVTVDAKHGTTTGVSARDRATT+L+LASRDSKP DFNRPGHIFPLKYREG
Sbjct: 203 ENEEKLSTAFTVTVDAKHGTTTGVSARDRATTILSLASRDSKPEDFNRPGHIFPLKYREG 262

Query: 150 GVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADL 209
           GVLKRAGHTEASVDL VLAG DP  VLCE+VDDDGSMARLPKLREFA   NLK++SIADL
Sbjct: 263 GVLKRAGHTEASVDLTVLAGLDPVGVLCEIVDDDGSMARLPKLREFAAENNLKVVSIADL 322

Query: 210 IRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHS 269
           IRYRRKRDKLV+R+SAARIPTMWGPFTAYCYRSILDGIEHIAMVKG+IGDGQDILVRVHS
Sbjct: 323 IRYRRKRDKLVERASAARIPTMWGPFTAYCYRSILDGIEHIAMVKGEIGDGQDILVRVHS 382

Query: 270 ECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDG 329
           ECLTGDIFGSARCDCG+QLAL+MQQIEA GRGVLVYLRGHEGRGIGLGHKLRAYNLQD G
Sbjct: 383 ECLTGDIFGSARCDCGNQLALSMQQIEATGRGVLVYLRGHEGRGIGLGHKLRAYNLQDAG 442

Query: 330 RDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 389
           RDTVEANEELGLPVDSREYGIGAQ++RDLGVRTMKLMTNNP+KYVGLKGYGLA+ GRVPL
Sbjct: 443 RDTVEANEELGLPVDSREYGIGAQIIRDLGVRTMKLMTNNPAKYVGLKGYGLAIVGRVPL 502

Query: 390 ITPIKKENKRYLETKRAKMGHIYGLESNGRLTNLI 424
           ++ I KENKRYLETKR KMGH+YGL+  G +   I
Sbjct: 503 LSLITKENKRYLETKRTKMGHMYGLKFKGDVVEKI 537
Catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 5EC: .EC: 4EC: .EC: 2EC: 5
>sp|Q0AXM5|RIBBA_SYNWW Riboflavin biosynthesis protein RibBA OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|Q5YTP3|RIBBA_NOCFA Riboflavin biosynthesis protein RibBA OS=Nocardia farcinica (strain IFM 10152) GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|A8LY38|RIBBA_SALAI Riboflavin biosynthesis protein RibBA OS=Salinispora arenicola (strain CNS-205) GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|A4X639|RIBBA_SALTO Riboflavin biosynthesis protein RibBA OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|C0ZZE5|RIBBA_RHOE4 Riboflavin biosynthesis protein RibBA OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|B1MCA4|RIBBA_MYCA9 Riboflavin biosynthesis protein RibBA OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|O66679|RIBBA_AQUAE Riboflavin biosynthesis protein RibBA OS=Aquifex aeolicus (strain VF5) GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|Q0S0K2|RIBBA_RHOSR Riboflavin biosynthesis protein RibBA OS=Rhodococcus sp. (strain RHA1) GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|Q5WH08|RIBBA_BACSK Riboflavin biosynthesis protein RibBA OS=Bacillus clausii (strain KSM-K16) GN=ribBA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query442
296087438 845 unnamed protein product [Vitis vinifera] 0.934 0.488 0.903 0.0
225465770 559 PREDICTED: riboflavin biosynthesis prote 0.934 0.738 0.903 0.0
224055964 552 predicted protein [Populus trichocarpa] 0.916 0.733 0.904 0.0
356525856 544 PREDICTED: riboflavin biosynthesis prote 0.929 0.755 0.875 0.0
356554732 544 PREDICTED: riboflavin biosynthesis prote 0.929 0.755 0.873 0.0
297794019541 hypothetical protein ARALYDRAFT_496632 [ 0.880 0.719 0.899 0.0
79547445 543 GTP cyclohydrolase-2 [Arabidopsis thalia 0.893 0.727 0.878 0.0
356551128 550 PREDICTED: riboflavin biosynthesis prote 0.929 0.747 0.844 0.0
357445919541 Riboflavin biosynthesis protein [Medicag 0.914 0.746 0.841 0.0
356528022 546 PREDICTED: riboflavin biosynthesis prote 0.920 0.745 0.843 0.0
>gi|296087438|emb|CBI34027.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  776 bits (2005), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/413 (90%), Positives = 393/413 (95%)

Query: 30  FVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQK 89
            VVVVDDEDRENEGDLIMAA LATPEAMAFIVKHGTGIVCVSMKGEDLERL++PLMV QK
Sbjct: 433 IVVVVDDEDRENEGDLIMAASLATPEAMAFIVKHGTGIVCVSMKGEDLERLEIPLMVTQK 492

Query: 90  ENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREG 149
           +NDEKL TAFTV+VDAKHGTTTGVSARDRATT+L LASRDSKP DFNRPGHIFPLKYREG
Sbjct: 493 DNDEKLSTAFTVSVDAKHGTTTGVSARDRATTILALASRDSKPEDFNRPGHIFPLKYREG 552

Query: 150 GVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADL 209
           GVLKRAGHTEASVDLA+LAG DP AVLCEVVDDDGSMARLPKLR+FA+RENLKIISIADL
Sbjct: 553 GVLKRAGHTEASVDLAMLAGLDPVAVLCEVVDDDGSMARLPKLRQFAERENLKIISIADL 612

Query: 210 IRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHS 269
           IRYRRKRDKLVDRS+ ARIPTMWGPFTAYCYRSILDGIEHIAMVKG+IGDGQDILVRVHS
Sbjct: 613 IRYRRKRDKLVDRSAGARIPTMWGPFTAYCYRSILDGIEHIAMVKGEIGDGQDILVRVHS 672

Query: 270 ECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDG 329
           ECLTGDIFGSARCDCG+QLALAMQQIE AG+GVLVYLRGHEGRGIGLGHKL AYNLQDDG
Sbjct: 673 ECLTGDIFGSARCDCGNQLALAMQQIEKAGKGVLVYLRGHEGRGIGLGHKLHAYNLQDDG 732

Query: 330 RDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 389
           RDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNP+KY+GLKGYGLAV+GRVPL
Sbjct: 733 RDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPAKYIGLKGYGLAVSGRVPL 792

Query: 390 ITPIKKENKRYLETKRAKMGHIYGLESNGRLTNLINGNGKPSIKSSSDTVSDS 442
           +TPI KEN RYLETKR+KMGH+YGLE NG LTNLI+GNGK SI +  D VSDS
Sbjct: 793 LTPITKENGRYLETKRSKMGHVYGLEFNGHLTNLISGNGKQSINTQPDPVSDS 845

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225465770|ref|XP_002267374.1| PREDICTED: riboflavin biosynthesis protein ribBA, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224055964|ref|XP_002298707.1| predicted protein [Populus trichocarpa] gi|222845965|gb|EEE83512.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356525856|ref|XP_003531537.1| PREDICTED: riboflavin biosynthesis protein ribBA, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|356554732|ref|XP_003545697.1| PREDICTED: riboflavin biosynthesis protein ribBA, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|297794019|ref|XP_002864894.1| hypothetical protein ARALYDRAFT_496632 [Arabidopsis lyrata subsp. lyrata] gi|297310729|gb|EFH41153.1| hypothetical protein ARALYDRAFT_496632 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|79547445|ref|NP_201235.4| GTP cyclohydrolase-2 [Arabidopsis thaliana] gi|27735197|sp|P47924.2|RIBBA_ARATH RecName: Full=Riboflavin biosynthesis protein ribBA, chloroplastic; Includes: RecName: Full=3,4-dihydroxy-2-butanone 4-phosphate synthase; Short=DHBP synthase; Includes: RecName: Full=GTP cyclohydrolase-2; AltName: Full=GTP cyclohydrolase II; Flags: Precursor gi|2462925|emb|CAA03884.1| GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone-4-phoshate synthase [Arabidopsis thaliana] gi|9759406|dbj|BAB09861.1| GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone-4-phoshate synthase [Arabidopsis thaliana] gi|332010484|gb|AED97867.1| GTP cyclohydrolase-2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356551128|ref|XP_003543930.1| PREDICTED: riboflavin biosynthesis protein ribBA, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|357445919|ref|XP_003593237.1| Riboflavin biosynthesis protein [Medicago truncatula] gi|355482285|gb|AES63488.1| Riboflavin biosynthesis protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356528022|ref|XP_003532604.1| PREDICTED: riboflavin biosynthesis protein ribBA, chloroplastic-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query442
TAIR|locus:2173373543 GCH "GTP cyclohydrolase II" [A 0.871 0.709 0.864 7e-180
TAIR|locus:2041253476 RIBA2 "homolog of ribA 2" [Ara 0.766 0.712 0.737 4.7e-135
TIGR_CMR|CHY_1473401 CHY_1473 "3,4-dihydroxy-2-buta 0.834 0.920 0.584 6.2e-117
UNIPROTKB|P0A5V0425 ribBA "Riboflavin biosynthesis 0.834 0.868 0.566 1.7e-107
TIGR_CMR|BA_4333397 BA_4333 "3,4-dihydroxy-2-butan 0.823 0.916 0.567 5.1e-106
TIGR_CMR|GSU_1690400 GSU_1690 "3,4-dihydroxy-2-buta 0.823 0.91 0.539 2.8e-105
TIGR_CMR|DET_1188403 DET_1188 "3,4-dihydroxy-2-buta 0.832 0.913 0.541 1.4e-103
TIGR_CMR|CBU_0647387 CBU_0647 "riboflavin biosynthe 0.828 0.945 0.512 4.3e-93
UNIPROTKB|Q9KPU3369 VC_2269 "3,4-dihydroxy-2-butan 0.746 0.894 0.441 5.2e-65
TIGR_CMR|VC_2269369 VC_2269 "3,4-dihydroxy-2-butan 0.746 0.894 0.441 5.2e-65
TAIR|locus:2173373 GCH "GTP cyclohydrolase II" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1746 (619.7 bits), Expect = 7.0e-180, P = 7.0e-180
 Identities = 333/385 (86%), Positives = 357/385 (92%)

Query:    45 LIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVD 104
             L+MAAQLATPEAMAFIV+HGTGIVCVSMK +DLERL LPLMV QKEN+EKL TAFTVTVD
Sbjct:   158 LVMAAQLATPEAMAFIVRHGTGIVCVSMKEDDLERLHLPLMVNQKENEEKLSTAFTVTVD 217

Query:   105 AKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDL 164
             AKHGTTTGVSARDRATT+L+LASRDSKP DFNRPGHIFPLKYREGGVLKRAGHTEASVDL
Sbjct:   218 AKHGTTTGVSARDRATTILSLASRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDL 277

Query:   165 AVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSS 224
              VLAG DP  VLCE+VDDDGSMARLPKLREFA   NLK++SIADLIRYRRKRDKLV+R+S
Sbjct:   278 TVLAGLDPVGVLCEIVDDDGSMARLPKLREFAAENNLKVVSIADLIRYRRKRDKLVERAS 337

Query:   225 AARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDC 284
             AARIPTMWGPFTAYCYRSILDGIEHIAMVKG+IGDGQDILVRVHSECLTGDIFGSARCDC
Sbjct:   338 AARIPTMWGPFTAYCYRSILDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDC 397

Query:   285 GDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVD 344
             G+QLAL+MQQIEA GRGVLVYLRGHEGRGIGLGHKLRAYNLQD GRDTVEANEELGLPVD
Sbjct:   398 GNQLALSMQQIEATGRGVLVYLRGHEGRGIGLGHKLRAYNLQDAGRDTVEANEELGLPVD 457

Query:   345 SREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETK 404
             SREYGIGAQ++RDLGVRTMKLMTNNP+KYVGLKGYGLA+ GRVPL++ I KENKRYLETK
Sbjct:   458 SREYGIGAQIIRDLGVRTMKLMTNNPAKYVGLKGYGLAIVGRVPLLSLITKENKRYLETK 517

Query:   405 RAKMGHIYGLESNGRLTNLINGNGK 429
             R KMGH+YGL+  G +   I    +
Sbjct:   518 RTKMGHMYGLKFKGDVVEKIESESE 542
GO:0003935 "GTP cyclohydrolase II activity" evidence=IEA;IGI;ISS
GO:0008686 "3,4-dihydroxy-2-butanone-4-phosphate synthase activity" evidence=IEA;IGI;ISS
GO:0009231 "riboflavin biosynthetic process" evidence=IEA;IGI;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016020 "membrane" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0048767 "root hair elongation" evidence=RCA
TAIR|locus:2041253 RIBA2 "homolog of ribA 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1473 CHY_1473 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|P0A5V0 ribBA "Riboflavin biosynthesis protein RibBA" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4333 BA_4333 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1690 GSU_1690 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1188 DET_1188 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0647 CBU_0647 "riboflavin biosynthesis protein RibA" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KPU3 VC_2269 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2269 VC_2269 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9PLJ5RIBBA_CHLMU3, ., 5, ., 4, ., 2, 50.52750.85740.8938yesno
B0KAI2RIBBA_THEP33, ., 5, ., 4, ., 2, 50.55440.85970.9595yesno
C5D3N0RIBBA_GEOSW3, ., 5, ., 4, ., 2, 50.56690.85290.9496yesno
B0K0Y9RIBBA_THEPX3, ., 5, ., 4, ., 2, 50.55440.85970.9595yesno
C3LIX7RIBBA_BACAC3, ., 5, ., 4, ., 2, 50.56810.87100.9697yesno
Q741F1RIBBA_MYCPA3, ., 5, ., 4, ., 2, 50.58290.85520.8894N/Ano
Q5WH08RIBBA_BACSK3, ., 5, ., 4, ., 2, 50.57400.86190.9596yesno
C3P7P7RIBBA_BACAA3, ., 5, ., 4, ., 2, 50.56810.87100.9697yesno
Q635H0RIBBA_BACCZ3, ., 5, ., 4, ., 2, 50.56810.87100.9697yesno
Q5YTP3RIBBA_NOCFA3, ., 5, ., 4, ., 2, 50.60730.85520.9130yesno
A4QEG9RIBBA_CORGB3, ., 5, ., 4, ., 2, 50.57550.85290.8933yesno
B7IWM5RIBBA_BACC23, ., 5, ., 4, ., 2, 50.57060.87100.9697yesno
A0RIB3RIBBA_BACAH3, ., 5, ., 4, ., 2, 50.56810.87100.9697yesno
A5U2B7RIBBA_MYCTA3, ., 5, ., 4, ., 2, 50.58030.85520.8894yesno
C0ZKW2RIBBA_BREBN3, ., 5, ., 4, ., 2, 50.58330.85970.9523yesno
P0A5V0RIBBA_MYCTU3, ., 5, ., 4, ., 2, 50.58030.85520.8894yesno
P0A5V1RIBBA_MYCBO3, ., 5, ., 4, ., 2, 50.58030.85520.8894yesno
A4SFY4RIBBA_PROVI3, ., 5, ., 4, ., 2, 50.55090.85740.9243yesno
A4X639RIBBA_SALTO3, ., 5, ., 4, ., 2, 50.58480.86190.9525yesno
Q818X6RIBBA_BACCR3, ., 5, ., 4, ., 2, 50.57550.85970.9571yesno
Q9Z734RIBBA_CHLPN3, ., 5, ., 4, ., 2, 50.56430.85740.9066yesno
B7JLW6RIBBA_BACC03, ., 5, ., 4, ., 2, 50.56550.87100.9697yesno
A1KIK4RIBBA_MYCBP3, ., 5, ., 4, ., 2, 50.58030.85520.8894yesno
O66679RIBBA_AQUAE3, ., 5, ., 4, ., 2, 50.57920.86190.9384yesno
B7HAY4RIBBA_BACC43, ., 5, ., 4, ., 2, 50.57550.85970.9571yesno
A0PPL6RIBBA_MYCUA3, ., 5, ., 4, ., 2, 50.58290.85520.8894yesno
P47924RIBBA_ARATH3, ., 5, ., 4, ., 2, 50.87840.89360.7274yesno
C1EQY5RIBBA_BACC33, ., 5, ., 4, ., 2, 50.56810.87100.9697yesno
B7HNM8RIBBA_BACC73, ., 5, ., 4, ., 2, 50.56810.87100.9697yesno
C1AN60RIBBA_MYCBT3, ., 5, ., 4, ., 2, 50.58030.85520.8894yesno
P17620RIBBA_BACSU3, ., 5, ., 4, ., 2, 50.56280.85290.9472yesno
Q0AXM5RIBBA_SYNWW3, ., 5, ., 4, ., 2, 50.61130.86420.9597yesno
A8LY38RIBBA_SALAI3, ., 5, ., 4, ., 2, 50.58530.85740.9023yesno
Q8NQ52RIBBA_CORGL3, ., 5, ., 4, ., 2, 50.57550.85290.8933yesno
B9IWX4RIBBA_BACCQ3, ., 5, ., 4, ., 2, 50.56810.87100.9697yesno
Q3B2I6RIBBA_PELLD3, ., 5, ., 4, ., 2, 50.55350.85740.9266yesno
A9VG50RIBBA_BACWK3, ., 5, ., 4, ., 2, 50.57320.87100.9697yesno
B1MCA4RIBBA_MYCA93, ., 5, ., 4, ., 2, 50.60100.85520.9064yesno
A1T8K1RIBBA_MYCVP3, ., 5, ., 4, ., 2, 50.58410.86650.9054yesno
Q0S0K2RIBBA_RHOSR3, ., 5, ., 4, ., 2, 50.59580.85520.9064yesno
C0ZZE5RIBBA_RHOE43, ., 5, ., 4, ., 2, 50.59840.85520.8915yesno
A0Q3H7RIBBA_CLONN3, ., 5, ., 4, ., 2, 50.55290.86650.9251yesno
B2HP67RIBBA_MYCMM3, ., 5, ., 4, ., 2, 50.58540.85520.8894yesno
Q6HE54RIBBA_BACHK3, ., 5, ., 4, ., 2, 50.56810.87100.9697yesno
Q731I5RIBBA_BACC13, ., 5, ., 4, ., 2, 50.56810.87100.9697yesno
A7GSD5RIBBA_BACCN3, ., 5, ., 4, ., 2, 50.54490.87100.9697yesno
A0QI09RIBBA_MYCA13, ., 5, ., 4, ., 2, 50.58030.85520.8894yesno
Q81MB6RIBBA_BACAN3, ., 5, ., 4, ., 2, 50.56810.87100.9697yesno
A4TC13RIBBA_MYCGI3, ., 5, ., 4, ., 2, 50.59060.85520.8936yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer4.1.99.120.991
3rd Layer3.5.40.976
3rd Layer4.1.990.976
3rd Layer3.5.4.250.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query442
PLN02831450 PLN02831, PLN02831, Bifunctional GTP cyclohydrolas 0.0
PRK09311402 PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-b 0.0
PRK09319 555 PRK09319, PRK09319, bifunctional 3,4-dihydroxy-2-b 0.0
PRK14019367 PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-b 1e-126
cd00641193 cd00641, GTP_cyclohydro2, GTP cyclohydrolase II (R 1e-111
PRK09318387 PRK09318, PRK09318, bifunctional 3,4-dihydroxy-2-b 1e-109
pfam00926193 pfam00926, DHBP_synthase, 3,4-dihydroxy-2-butanone 1e-101
PRK09314339 PRK09314, PRK09314, bifunctional 3,4-dihydroxy-2-b 3e-97
COG0108203 COG0108, RibB, 3,4-dihydroxy-2-butanone 4-phosphat 7e-97
PRK00393197 PRK00393, ribA, GTP cyclohydrolase II; Reviewed 5e-95
COG0807193 COG0807, RibA, GTP cyclohydrolase II [Coenzyme met 5e-95
pfam00925169 pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II 1e-94
PRK12485369 PRK12485, PRK12485, bifunctional 3,4-dihydroxy-2-b 4e-87
TIGR00505191 TIGR00505, ribA, GTP cyclohydrolase II 1e-81
PRK03353217 PRK03353, ribB, 3,4-dihydroxy-2-butanone 4-phospha 1e-80
TIGR00506199 TIGR00506, ribB, 3,4-dihydroxy-2-butanone 4-phosph 5e-79
PRK01792214 PRK01792, ribB, 3,4-dihydroxy-2-butanone 4-phospha 1e-74
PRK00910218 PRK00910, ribB, 3,4-dihydroxy-2-butanone 4-phospha 3e-63
PRK00014230 PRK00014, ribB, 3,4-dihydroxy-2-butanone 4-phospha 2e-58
PRK08815375 PRK08815, PRK08815, GTP cyclohydrolase; Provisiona 2e-49
PRK05773219 PRK05773, PRK05773, 3,4-dihydroxy-2-butanone 4-pho 4e-16
PRK07198418 PRK07198, PRK07198, hypothetical protein; Validate 7e-06
>gnl|CDD|215445 PLN02831, PLN02831, Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase Back     alignment and domain information 
 Score =  818 bits (2115), Expect = 0.0
 Identities = 330/401 (82%), Positives = 360/401 (89%), Gaps = 1/401 (0%)

Query: 30  FVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQK 89
           FVVVVDDEDRENEGDLIMAA L TPEAMAF+VKHG+GIVCVSMKGEDL+RL LPLMV  K
Sbjct: 50  FVVVVDDEDRENEGDLIMAASLVTPEAMAFLVKHGSGIVCVSMKGEDLDRLRLPLMVPSK 109

Query: 90  ENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREG 149
           EN+EK+ TAFTVTVDAKHGTTTGVSA DRA T+L LAS DSKP DF RPGHIFPL+YREG
Sbjct: 110 ENEEKMATAFTVTVDAKHGTTTGVSASDRAKTILALASPDSKPEDFRRPGHIFPLRYREG 169

Query: 150 GVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDD-DGSMARLPKLREFAKRENLKIISIAD 208
           GVLKRAGHTEA+VDLAVLAG  P  VLCE+V+D DGSMARLP+LR+FA+   LKIISIAD
Sbjct: 170 GVLKRAGHTEAAVDLAVLAGLPPVGVLCEIVNDEDGSMARLPQLRKFAEEHGLKIISIAD 229

Query: 209 LIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVH 268
           LIRYRRKR+KLV+R++ AR+PT WG FTAYCYRS LDGIEHIA VKGDIGDGQD+LVRVH
Sbjct: 230 LIRYRRKREKLVERTAVARLPTKWGLFTAYCYRSKLDGIEHIAFVKGDIGDGQDVLVRVH 289

Query: 269 SECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDD 328
           SECLTGDIFGSARCDCG+QLALAMQ IE AGRGVLVYLRGHEGRGIGLGHKLRAYNLQD+
Sbjct: 290 SECLTGDIFGSARCDCGNQLALAMQLIEKAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDE 349

Query: 329 GRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVP 388
           GRDTVEANEELGLPVDSREYGIGAQ+LRDLGVRTM+LMTNNP+KY GLKGYGLAV GRVP
Sbjct: 350 GRDTVEANEELGLPVDSREYGIGAQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409

Query: 389 LITPIKKENKRYLETKRAKMGHIYGLESNGRLTNLINGNGK 429
           L+TPI KENKRYLETKR KMGH+YG +  G ++ L +    
Sbjct: 410 LLTPITKENKRYLETKRTKMGHVYGSDLGGHVSGLESAETN 450

Length = 450
>gnl|CDD|181774 PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional Back     alignment and domain information
>gnl|CDD|236465 PRK09319, PRK09319, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional Back     alignment and domain information
>gnl|CDD|237587 PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional Back     alignment and domain information
>gnl|CDD|238348 cd00641, GTP_cyclohydro2, GTP cyclohydrolase II (RibA) Back     alignment and domain information
>gnl|CDD|236464 PRK09318, PRK09318, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional Back     alignment and domain information
>gnl|CDD|216197 pfam00926, DHBP_synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase Back     alignment and domain information
>gnl|CDD|181775 PRK09314, PRK09314, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional Back     alignment and domain information
>gnl|CDD|223186 COG0108, RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|234745 PRK00393, ribA, GTP cyclohydrolase II; Reviewed Back     alignment and domain information
>gnl|CDD|223878 COG0807, RibA, GTP cyclohydrolase II [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|216196 pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II Back     alignment and domain information
>gnl|CDD|171535 PRK12485, PRK12485, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional Back     alignment and domain information
>gnl|CDD|129596 TIGR00505, ribA, GTP cyclohydrolase II Back     alignment and domain information
>gnl|CDD|235119 PRK03353, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|232999 TIGR00506, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase Back     alignment and domain information
>gnl|CDD|167278 PRK01792, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|179162 PRK00910, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|134031 PRK00014, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|236340 PRK08815, PRK08815, GTP cyclohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|235601 PRK05773, PRK05773, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated Back     alignment and domain information
>gnl|CDD|235959 PRK07198, PRK07198, hypothetical protein; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 442
PRK09319 555 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate 100.0
PLN02831450 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy- 100.0
PRK09311402 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate 100.0
PRK09318387 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate 100.0
PRK12485369 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate 100.0
PRK14019367 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate 100.0
PRK09314339 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate 100.0
PRK08815375 GTP cyclohydrolase; Provisional 100.0
COG0108203 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase 100.0
PRK00910218 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase 100.0
PRK01792214 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase 100.0
PRK00014230 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase 100.0
TIGR00506199 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase 100.0
PF00926194 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphat 100.0
COG0807193 RibA GTP cyclohydrolase II [Coenzyme metabolism] 100.0
PRK03353217 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase 100.0
PRK05773219 3,4-dihydroxy-2-butanone 4-phosphate synthase; Val 100.0
KOG1284357 consensus Bifunctional GTP cyclohydrolase II/3,4-d 100.0
PRK00393197 ribA GTP cyclohydrolase II; Reviewed 100.0
TIGR00505191 ribA GTP cyclohydrolase II. Several members of the 100.0
PF00925169 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: 100.0
cd00641193 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP 100.0
PRK07198418 hypothetical protein; Validated 100.0
KOG1284357 consensus Bifunctional GTP cyclohydrolase II/3,4-d 99.72
PRK14481 331 dihydroxyacetone kinase subunit DhaK; Provisional 83.26
TIGR02361 574 dak_ATP dihydroxyacetone kinase, ATP-dependent. Th 81.59
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6.6e-135  Score=1065.95  Aligned_cols=410  Identities=56%  Similarity=0.907  Sum_probs=395.1

Q ss_pred             cCChhHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCcCCHHHHHHHHHcCCceEEEecChhhHhhcCCccccccccCCCc
Q 013465           15 LLSPRPLKTFAKERLFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEK   94 (442)
Q Consensus        15 ~~~~~~~~~alr~G~~Viv~Dd~~re~EgdLv~aAe~~t~e~v~fm~~~~~Glicval~~~~~~~L~Lp~m~~~~~~~~~   94 (442)
                      ..+.++++++||+|+||||+||++||||||||+|||++|++.||||++|++|+||+||++++|++|+||+|+..  |++.
T Consensus         5 ~~~Ie~Ai~aLr~G~~VvV~Dde~REnEgDLV~aAE~~T~e~infm~r~a~GliClamt~~ra~~L~Lp~Mv~~--n~~~   82 (555)
T PRK09319          5 FDSIDDALAAIRNGECVVVVDDENRENEGDLICAAQFATPEMINFMATEARGLICLAMTGERLDELDLPLMVDR--NTDS   82 (555)
T ss_pred             cccHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEhhhCCHHHHHHHHHhcCCCeeeccCHHHHhhcCCCccccc--CCCC
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999986  7777


Q ss_pred             cCCceEEEEecC--CCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCcccceeeccCCccccCChhHHHHHHHHHcCCCc
Q 013465           95 LCTAFTVTVDAK--HGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDP  172 (442)
Q Consensus        95 ~~t~ftvsVDa~--~g~~TGISa~DRA~Tir~LAd~~s~~~df~~PGHV~Pl~a~~gGvl~R~GhtEaavdLarlAGl~P  172 (442)
                      ++++|||||||+  .|++|||||.|||+|||+||||.++|.||++|||||||++++|||++|+|||||||||||||||.|
T Consensus        83 ~~taFtVsVDa~~~~g~tTGISA~DRa~TIr~ladp~~~~~Df~rPGHvfPL~A~~GGvl~R~GHTEAAVDLarLAGL~P  162 (555)
T PRK09319         83 NQTAFTVSIDAGPELGVSTGISAEDRARTIQVAINPDTKPEDLRRPGHIFPLRAKEGGVLKRAGHTEAAVDLARLAGLYP  162 (555)
T ss_pred             CCceEEEEEeccccCCCCCCcCHHHHHHHHHHHhCCCCChhhcCCCCCccceeeccCCCCCCCChHHHHHHHHHHcCCCc
Confidence            889999999987  599999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeCCCCCcCChhHHHHHHHhcCCceEehHHHHHHHhhccccccccccceecCcCccEEEEEEEecCCCcEEEEE
Q 013465          173 AAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAM  252 (442)
Q Consensus       173 aavi~ell~~dG~~a~~~~l~~fA~~h~L~~v~i~dli~yr~~~e~lV~r~~~~~lpT~~G~F~~~~f~~~~~g~eH~AL  252 (442)
                      +||||||+++||+|||++++.+||++|+||+|+|+|||+||.++|++|++++++++||.||+|++++|++..++.||+||
T Consensus       163 aaVicEi~~~dG~mar~~~l~~fA~~h~L~iisi~dLi~yR~~~e~~V~rv~~~~lpT~~G~F~~~~yr~~~~g~eHvAL  242 (555)
T PRK09319        163 AGVICEIQNPDGSMARLPELKEYAKQHGLKLISIADLISYRLQNERFVYREAVAKLPSQFGQFQAYGYRNELDGSEHVAL  242 (555)
T ss_pred             eEEEEEEecCCCCccCHHHHHHHHHHcCCcEEEhHHhHHHHhhccccceEEEEEeeecCCccEEEEEEEeCCCCeEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCC--CCceeEEEcccCcccccccCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCCCchHHHhhhhhcccCCC
Q 013465          253 VKGDIGD--GQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGR  330 (442)
Q Consensus       253 v~Gdi~~--~~~vlVRVHS~CltgDvfgS~~CdCg~qL~~Al~~I~~~G~GVlvYLr~qEgRgiGl~~Kl~ay~lqd~g~  330 (442)
                      ++|++..  ++||||||||+|+|||+|||.+|||++||++||++|+++|.||||||| ||||||||.||+++|.|||+|+
T Consensus       243 vkGd~~~~~~~pvLVRVHSeClTGDvfgS~rCDCg~QL~~AL~~Ia~eG~GVlVYLr-qEGRGiGL~nKl~aY~LQd~G~  321 (555)
T PRK09319        243 VKGDPANFKDEPVLVRMHSECLTGDAFGSLRCDCRMQLEAALKMIENEGEGVVVYLR-QEGRGIGLINKLKAYSLQDGGL  321 (555)
T ss_pred             EcCCcccccCCCceEEEeccCcHHHHhcCCCCCCHHHHHHHHHHHHhcCCEEEEEeC-CCCcchhHHHHHHHHhhhhcCC
Confidence            9999963  579999999999999999999999999999999999999999999998 9999999999999999999999


Q ss_pred             CchhhhhhcCCCCCCcChhHHHHHHHHcCCCeeeeccCCcCcccccccCCeEEEEEeecCCCCChhhHHHHHHHHHhcCC
Q 013465          331 DTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH  410 (442)
Q Consensus       331 DT~eAn~~lg~~~D~Rdygi~aqIL~~LGv~~irLLTNNP~K~~aL~~~Gi~V~~rvpl~~~~~~~n~~Yl~tK~~k~gH  410 (442)
                      ||++||..+||+.|.|+||+|||||++|||++||||||||+|+.+|++|||+|++++|+++++|++|++||+||++||||
T Consensus       322 DTveAn~~lG~~~D~RdYgigAQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvpl~~~~~~~n~~YL~tK~~k~gH  401 (555)
T PRK09319        322 DTVEANERLGFPADLRNYGVGAQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVPLLIEANDYNAEYLATKAEKLGH  401 (555)
T ss_pred             ChhhhhhhcCCcccceehhHHHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecccCCCCcchhHHHHHHHHhhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCcccccccCCCC
Q 013465          411 IYGLESNGRLTNLINGNGK  429 (442)
Q Consensus       411 ~l~~~~~~~~~~~~~~~~~  429 (442)
                      +|+.+.-.  +..|.-+++
T Consensus       402 ~l~~~~~~--~~~~~~~~~  418 (555)
T PRK09319        402 LLLQTYLV--TIAIAWDGE  418 (555)
T ss_pred             ccCCCccc--cEEEEecCC
Confidence            99876533  445555554

>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase Back     alignment and domain information
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional Back     alignment and domain information
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional Back     alignment and domain information
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional Back     alignment and domain information
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional Back     alignment and domain information
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional Back     alignment and domain information
>PRK08815 GTP cyclohydrolase; Provisional Back     alignment and domain information
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism] Back     alignment and domain information
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase Back     alignment and domain information
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4 Back     alignment and domain information
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism] Back     alignment and domain information
>PRK03353 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>PRK05773 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated Back     alignment and domain information
>KOG1284 consensus Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase [Coenzyme transport and metabolism] Back     alignment and domain information
>PRK00393 ribA GTP cyclohydrolase II; Reviewed Back     alignment and domain information
>TIGR00505 ribA GTP cyclohydrolase II Back     alignment and domain information
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin Back     alignment and domain information
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA) Back     alignment and domain information
>PRK07198 hypothetical protein; Validated Back     alignment and domain information
>KOG1284 consensus Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase [Coenzyme transport and metabolism] Back     alignment and domain information
>PRK14481 dihydroxyacetone kinase subunit DhaK; Provisional Back     alignment and domain information
>TIGR02361 dak_ATP dihydroxyacetone kinase, ATP-dependent Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query442
3h07_A220 Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Pho 5e-47
1iez_A217 Solution Structure Of 3,4-Dihydroxy-2-Butanone 4-Ph 5e-47
2bz0_A196 Crystal Structure Of E. Coli Gtp Cyclohydrolase Ii 6e-47
1g57_A217 Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Pho 6e-47
3lqu_A217 Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Pho 7e-46
2bz1_A196 Crystal Structure Of Apo E. Coli Gtp Cyclohydrolase 2e-45
3mgz_A206 Crystal Structure Of Dhbps Domain Of Bi-Functional 2e-42
3mk5_A212 Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Pho 2e-42
1tks_A204 Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Pho 4e-40
1k49_A233 Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Pho 3e-34
1pvw_A227 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From 1e-18
1pvy_A227 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From 1e-17
>pdb|3H07|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From Yersinia Pestis Co92 Length = 220 Back     alignment and structure 
Iteration: 1

 Score =  185 bits (469), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 88/174 (50%), Positives = 121/174 (69%), Gaps = 2/174 (1%)
Query: 45  LIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVD 104
           ++ AA+  T E MA  ++HG+GIVC+ +  E  ++LDLP+MV    N  +  TAFTVT++
Sbjct: 46  MVFAAEAMTLEQMALTIRHGSGIVCLCITDERRQQLDLPMMVTH--NSSQFQTAFTVTIE 103
Query: 105 AKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDL 164
           A  G TTGVSA DR TT+    + ++KP D NRPGH+FPL+ + GGVL R GHTEAS+DL
Sbjct: 104 AAEGVTTGVSAADRLTTIRKAIADNAKPADLNRPGHVFPLRGQPGGVLSRRGHTEASIDL 163
Query: 165 AVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDK 218
           A LAG+ PA VLCE+ +DDGSMA  P++  FAK  ++ +++I DL  Y + R K
Sbjct: 164 ATLAGYKPAGVLCELTNDDGSMAHAPEVIAFAKLHDMPVVTIDDLAAYLQSRAK 217
>pdb|1IEZ|A Chain A, Solution Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Of Riboflavin Biosynthesis Length = 217 Back     alignment and structure
>pdb|2BZ0|A Chain A, Crystal Structure Of E. Coli Gtp Cyclohydrolase Ii In Complex With Gtp Analogue, Gmpcpp, And Zinc Length = 196 Back     alignment and structure
>pdb|1G57|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Length = 217 Back     alignment and structure
>pdb|3LQU|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Complexed With Ribulose-5 Phosphate Length = 217 Back     alignment and structure
>pdb|2BZ1|A Chain A, Crystal Structure Of Apo E. Coli Gtp Cyclohydrolase Ii Length = 196 Back     alignment and structure
>pdb|3MGZ|A Chain A, Crystal Structure Of Dhbps Domain Of Bi-Functional DhbpsGTP Cyclohydrolase Ii From Mycobacterium Tuberculosis At Ph 4.0 Length = 206 Back     alignment and structure
>pdb|3MK5|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Domain From Mycobacterium Tuberculosis With Sulfate And Zinc At Ph 4.00 Length = 212 Back     alignment and structure
>pdb|1TKS|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Of Candida Albicans Length = 204 Back     alignment and structure
>pdb|1K49|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase (Cation Free Form) Length = 233 Back     alignment and structure
>pdb|1PVW|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M. Jannaschii Length = 227 Back     alignment and structure
>pdb|1PVY|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M. Jannaschii In Complex With Ribulose 5-Phosphate Length = 227 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query442
2bz1_A196 GTP cyclohydrolase II; riboflavin biosynthesis, ca 1e-128
1g57_A217 DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphat 1e-121
1tks_A204 3,4-dihydroxy-2-butanone 4-phosphate synthase; rib 1e-119
3mio_A206 DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphat 1e-119
1k4i_A233 3,4-dihydroxy-2-butanone 4-phosphate synthase; rib 1e-118
1snn_A227 DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphat 1e-106
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>2bz1_A GTP cyclohydrolase II; riboflavin biosynthesis, catalytic zinc, magnesium; 1.54A {Escherichia coli} SCOP: c.144.1.1 PDB: 2bz0_A Length = 196 Back     alignment and structure
 Score =  368 bits (946), Expect = e-128
 Identities = 93/192 (48%), Positives = 121/192 (63%), Gaps = 1/192 (0%)

Query: 220 VDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGS 279
           + R + A++PT WG F    +  +  G +H+A+V GDI     +L RVHSECLTGD   S
Sbjct: 3   LKRVAEAKLPTPWGDFLMVGFEELATGHDHVALVYGDISGHTPVLARVHSECLTGDALFS 62

Query: 280 ARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEEL 339
            RCDCG QL  A+ QI   GRG+L+Y R  EGR IGL +K+RAY LQD G DTVEAN +L
Sbjct: 63  LRCDCGFQLEAALTQIAEEGRGILLYHR-QEGRNIGLLNKIRAYALQDQGYDTVEANHQL 121

Query: 340 GLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKR 399
           G   D R++ + A M + LGV  ++L+TNNP K   L   G+ +  RVPLI      N+ 
Sbjct: 122 GFAADERDFTLCADMFKLLGVNEVRLLTNNPKKVEILTEAGINIVERVPLIVGRNPNNEH 181

Query: 400 YLETKRAKMGHI 411
           YL+TK  KMGH+
Sbjct: 182 YLDTKAEKMGHL 193
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A Length = 217 Back     alignment and structure
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A* Length = 204 Back     alignment and structure
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} PDB: 3mgz_A 3mk5_A Length = 206 Back     alignment and structure
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A Length = 233 Back     alignment and structure
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A Length = 227 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query442
3mio_A206 DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphat 100.0
1k4i_A233 3,4-dihydroxy-2-butanone 4-phosphate synthase; rib 100.0
1tks_A204 3,4-dihydroxy-2-butanone 4-phosphate synthase; rib 100.0
1snn_A227 DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphat 100.0
1g57_A217 DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphat 100.0
2bz1_A196 GTP cyclohydrolase II; riboflavin biosynthesis, ca 100.0
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A Back     alignment and structure
Probab=100.00  E-value=1.3e-76  Score=559.08  Aligned_cols=201  Identities=52%  Similarity=0.787  Sum_probs=186.7

Q ss_pred             cCChhHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCcCCHHHHHHHHHcCCceEEEecChhhHhhcCCccccccccCCCc
Q 013465           15 LLSPRPLKTFAKERLFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEK   94 (442)
Q Consensus        15 ~~~~~~~~~alr~G~~Viv~Dd~~re~EgdLv~aAe~~t~e~v~fm~~~~~Glicval~~~~~~~L~Lp~m~~~~~~~~~   94 (442)
                      ..+.++++++||+|+||||+||+|||||||||+|||++||+.||||++|++|+||+||++++|++|+||+|+..  |++.
T Consensus         4 ~~~ie~Ai~~lr~G~~Viv~DdedREnEgDli~aAe~~T~e~i~fm~~~~~GliC~~lt~~~a~~L~Lp~mv~~--n~~~   81 (206)
T 3mio_A            4 LDSVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDGAICDRLGLLPMYAV--NQDK   81 (206)
T ss_dssp             CCCHHHHHHHHHTTCCEEEESSSCTTCCCEEEEEGGGCCHHHHHHHHHHBCSCCEEEECHHHHHHTTCSCCC--------
T ss_pred             chhHHHHHHHHHCCCeEEEEeCCCCccceeEEEEhHhCCHHHHHHHHHhCCCceEEECCHHHHhhCCCCccccc--CCCC
Confidence            35889999999999999999999999999999999999999999999999999999999999999999999987  8888


Q ss_pred             cCCceEEEEecCCCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCcccceeeccCCccccCChhHHHHHHHHHcCCCccE
Q 013465           95 LCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAA  174 (442)
Q Consensus        95 ~~t~ftvsVDa~~g~~TGISa~DRA~Tir~LAd~~s~~~df~~PGHV~Pl~a~~gGvl~R~GhtEaavdLarlAGl~Paa  174 (442)
                      ++|+|||||||++|++|||||+|||+||++||+|.++|+||++|||||||++++|||++|+|||||||||||||||.|++
T Consensus        82 ~~taftvsvda~~g~tTGISA~DRa~Ti~~ladp~~~p~Df~rPGHvfPL~A~~gGvl~R~GhTEaavdLarlAGl~Pa~  161 (206)
T 3mio_A           82 HGTAYTVTVDARNGIGTGISASDRATTMRLLADPTSVADDFTRPGHVVPLRAKDGGVLRRPGHTEAAVDLARMAGLQPAG  161 (206)
T ss_dssp             -----CCCEEESSSCSSSCSHHHHHHHHHHHHCTTCCGGGEEEEEEEEEEECCTTGGGTCCCHHHHHHHHHHHTTSCSBE
T ss_pred             CCCCeEEEEecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHhCCCCCceeEeeCCCCcccCCChHHHHHHHHHHcCCCceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEE--eCCCCCcCChhHHHHHHHhcCCceEehHHHHHHHhhcc
Q 013465          175 VLCEV--VDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRD  217 (442)
Q Consensus       175 vi~el--l~~dG~~a~~~~l~~fA~~h~L~~v~i~dli~yr~~~e  217 (442)
                      |||||  +++||+|||.+++.+||++|+||+++|+|||+||+++|
T Consensus       162 vicEiv~~~~dG~mar~~~l~~fA~~h~l~~iti~dli~yr~~~e  206 (206)
T 3mio_A          162 AICEIVSQKDEGSMAHTDELRVFADEHGLALITIADLIEWRRKHE  206 (206)
T ss_dssp             EEEEBBCSSSTTSBCCHHHHHHHHHHHTCEEEEHHHHHHHHHHTC
T ss_pred             EEEEEeeeCCCCCcCCHHHHHHHHHHcCCcEEEHHHHHHHHHhcC
Confidence            99999  99999999999999999999999999999999998765
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A Back     alignment and structure
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A* Back     alignment and structure
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A Back     alignment and structure
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A Back     alignment and structure
>2bz1_A GTP cyclohydrolase II; riboflavin biosynthesis, catalytic zinc, magnesium; 1.54A {Escherichia coli} SCOP: c.144.1.1 PDB: 2bz0_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 442
d1g57a_209 d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphat 2e-70
d1snna_219 d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphat 4e-69
d1k4ia_216 d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphat 1e-66
d1tksa_202 d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphat 1e-65
d2bz1a1174 c.144.1.1 (A:1-174) GTP cyclohydrolase II, RibA {E 6e-59
>d1g57a_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Escherichia coli [TaxId: 562]} Length = 209 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: YrdC/RibB
superfamily: YrdC/RibB
family: 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
domain: 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
species: Escherichia coli [TaxId: 562]

 Score =  219 bits (559), Expect = 2e-70
 Identities = 97/188 (51%), Positives = 132/188 (70%), Gaps = 2/188 (1%)

Query: 30  FVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQK 89
            V+V+DDEDRENEGD+I  A+  T E MA  ++HG+GIVC+ +  +  ++LDLP+M   +
Sbjct: 24  GVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMM--VE 81

Query: 90  ENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREG 149
            N     T FTVT++A  G TTGVSA DR TTV    +  +KP D NRPGH+FPL+ + G
Sbjct: 82  NNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAG 141

Query: 150 GVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADL 209
           GVL R GHTEA++DL  LAGF PA VLCE+ +DDG+MAR P+  EFA + N+ +++I DL
Sbjct: 142 GVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIEFANKHNMALVTIEDL 201

Query: 210 IRYRRKRD 217
           + YR+  +
Sbjct: 202 VAYRQAHE 209
>d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 219 Back     information, alignment and structure
>d1k4ia_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Magnaporthe grisea [TaxId: 148305]} Length = 216 Back     information, alignment and structure
>d1tksa_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Candida albicans [TaxId: 5476]} Length = 202 Back     information, alignment and structure
>d2bz1a1 c.144.1.1 (A:1-174) GTP cyclohydrolase II, RibA {Escherichia coli [TaxId: 562]} Length = 174 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query442
d1g57a_209 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHB 100.0
d1tksa_202 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHB 100.0
d1k4ia_216 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHB 100.0
d1snna_219 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHB 100.0
d2bz1a1174 GTP cyclohydrolase II, RibA {Escherichia coli [Tax 100.0
>d1g57a_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: YrdC/RibB
superfamily: YrdC/RibB
family: 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
domain: 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.8e-72  Score=529.09  Aligned_cols=199  Identities=50%  Similarity=0.841  Sum_probs=191.0

Q ss_pred             ChhHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCcCCHHHHHHHHHcCCceEEEecChhhHhhcCCccccccccCCCccC
Q 013465           17 SPRPLKTFAKERLFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLC   96 (442)
Q Consensus        17 ~~~~~~~alr~G~~Viv~Dd~~re~EgdLv~aAe~~t~e~v~fm~~~~~Glicval~~~~~~~L~Lp~m~~~~~~~~~~~   96 (442)
                      +.++++++||+|+||||+||++||||||||++||.+|++.|+||++|++|+||+|+++++|++|+||+|+..  |++.++
T Consensus        11 ~ie~ai~alk~G~~Viv~Dd~~RE~EgDlv~~Ae~~t~e~i~fm~~~~~GliC~a~~~~~~~~L~Lp~m~~~--~~~~~~   88 (209)
T d1g57a_          11 RVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVEN--NTSAYG   88 (209)
T ss_dssp             HHHHHHHHHHTTCCEEEEC----CCCEEEEEETTTCCHHHHHHHHHHBCSCCEEEECHHHHHHTTCCBSCSS--CCCTTC
T ss_pred             hHHHHHHHHHCCCEEEEEECCCCCCcccEEEEHHHCCHHHHHHHHHhCCCCEEEcccHHHHhcCCCCCcccc--cccccC
Confidence            579999999999999999999999999999999999999999999999999999999999999999999986  778899


Q ss_pred             CceEEEEecCCCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCcccceeeccCCccccCChhHHHHHHHHHcCCCccEEE
Q 013465           97 TAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVL  176 (442)
Q Consensus        97 t~ftvsVDa~~g~~TGISa~DRA~Tir~LAd~~s~~~df~~PGHV~Pl~a~~gGvl~R~GhtEaavdLarlAGl~Paavi  176 (442)
                      ++|+||||+++|++|||||.|||+|||.|++++++|+||++|||||||++++||+++|+||||||||||+|||+.|+|||
T Consensus        89 ~~ftvsvd~~~g~tTGISa~dRa~Tir~l~~~~~~~~df~~PGHv~pL~a~~gGv~~R~GHTEaavdL~~lAGl~P~avi  168 (209)
T d1g57a_          89 TGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVL  168 (209)
T ss_dssp             CCBBSCEEESSSCSSSCSHHHHHHHHHHHHSTTCCGGGEEEEEEEEEEECCTTGGGTCCSHHHHHHHHHHHTTSCSCEEE
T ss_pred             CcceEEEEecCCccccccHHHHHHHHHHhhccCCCHHHhcCCceeceeeeccCCccccchHHHHHHHHHHhcCCCCeEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCcCChhHHHHHHHhcCCceEehHHHHHHHhhcc
Q 013465          177 CEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRD  217 (442)
Q Consensus       177 ~ell~~dG~~a~~~~l~~fA~~h~L~~v~i~dli~yr~~~e  217 (442)
                      |||++++|+||+.+++++||++|+||+|+|+|||+||+++|
T Consensus       169 ~Eil~~dG~~~~~~~~~~fA~~~~l~~isi~dli~yr~~~e  209 (209)
T d1g57a_         169 CELTNDDGTMARAPECIEFANKHNMALVTIEDLVAYRQAHE  209 (209)
T ss_dssp             EEBBCTTSSBCCHHHHHHHHHHTTCEEEEHHHHHHHHHHHC
T ss_pred             EEEecCCCcccCHHHHHHHHHHcCCCEEEHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999998875
>d1tksa_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Candida albicans [TaxId: 5476]} Back     information, alignment and structure
>d1k4ia_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Magnaporthe grisea [TaxId: 148305]} Back     information, alignment and structure
>d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2bz1a1 c.144.1.1 (A:1-174) GTP cyclohydrolase II, RibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure