Citrus Sinensis ID: 013470

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440--
MVAPLMEETEKGKSALINNAKPKIEEEEEEQQVVKVWSWGAGTDGQLGTGRLHDELSPQLLNLSSLSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTGKFHWVRLFIISYTPFFPPFFINVIAENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISRHCLPSQT
ccccEEEcccccccEEEcccccEEEEcccccccEEEEEEEccccccccccccccEEccEEEEccccccEEEEEEccccEEEEEccccccccEEEEEEccccccccccccccEEEEEEEcccccccccEEEEEcccccEEEEEccccEEEEEccccccccccccccccccEEEcccccccEEEEccccccEEEEEEcccccEEEEEEccccccccccccccccccccEEEcccccccEEEEEcccccEEEEEccccEEEEccccccccccccEEEccccccEEEEEEcccEEEEEEccccEEEEEccccccccccccccccEEEEEEEEEEcccccccEEEEEccccEEEEEEcccccEEEEEEcccccccccccccccccccEEEEEccccccccccccccccccEEEEccccccccccEEEEEcccccEEEEEEccccccc
cccccccHHHccccEEEEEEEcccccEEEEEcccEEEEEEccccccccccccccccccEEHHHHcccEEEEEEEcccEEEEEEccccccccEEEEEccccccccccccccccccccEHHHcccccEEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEccccccEEEEEccccccccccccccccccccccEHHHccccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccEEEccccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccccccHHHHHHcccEEEEEEEcccEEEEEEcccccccccccccccccccccEEEEccccEEEEEccccccccccccccccccccEHHHHcccccccEEEEEEEccccEEEEEcccccccc
MVAPLMEETEKGKSALInnakpkieeeEEEQQVVKVWswgagtdgqlgtgrlhdelspqllnlsslssvsmLACGGAHvlaltspssviggkvfswgrgssgqlghgemvdalypkpvtffdghrytithisagwnhsgfvsdsgclftcgdgtfgqlghgdyrshsspvkvssFVNKNVHQIACGMRHSLVLLKDclgnqvygfgsgkrgqlgvskdrirsvslpqvtiglhdieivgisangdrsaALSAeghlytwgrgfnstsdvncpqslpsslsfsQAALGWNHVLVLTgdgevlmlggshhgmlsdpervsstrplSVALEKVSNLDGVKVIQIAAGAEHSAVVTGKFHWVRLFIisytpffppffiNVIAENRAImtwgwgehgqlglgntcdqihpkvvnlgdefqnrdtqLEVFCGSgftyaisrhclpsqt
mvaplmeetekgksalinnakpkieeEEEEQQVVKVWSWGAGTDGQLGTGRLHDELSPQLLNLSSLSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGfgsgkrgqlgvskdrirsVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTGKFHWVRLFIISYTPFFPPFFINVIAENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISrhclpsqt
MVAPLMEETEKGKSALINNAKPKIeeeeeeQQVVKVWSWGAGTDGQLGTGRLHDElspqllnlsslssvsmlACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCpqslpsslsfsqaaLGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTGKFHWVRLFIISYTPFFPPFFINVIAENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISRHCLPSQT
********************************VVKVWSWGAGTDGQLGTGRLHDELSPQLLNLSSLSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCP*****SLSFSQAALGWNHVLVLTGDGEVLMLGGS******************VALEKVSNLDGVKVIQIAAGAEHSAVVTGKFHWVRLFIISYTPFFPPFFINVIAENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISRHCL****
MVAPLM*ETEKGK*AL*NNAKPKIEEEEEEQQVVKVWSWGAGTDGQLGTGRLHDELSPQLLNLSSLSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTGKFHWVRLFIISYTPFFPPFFINVIAENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISRHCLP***
**********KGKSALINNAKPK**********VKVWSWGAGTDGQLGTGRLHDELSPQLLNLSSLSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGML**********PLSVALEKVSNLDGVKVIQIAAGAEHSAVVTGKFHWVRLFIISYTPFFPPFFINVIAENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISRHCLPSQT
MVAPLMEETEKGKSALINNAKPKIEEEEEEQQVVKVWSWGAGTDGQLGTGRLHDELSPQLLNLSSLSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTGKFHWVRLFIISYTPFFPPFFINVIAENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISRHC*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MVAPLMEETEKGKSALINNAKPKIEEEEEEQQVVKVWSWGAGTDGQLGTGRLHDELSPQLLNLSSLSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTGKFHWVRLFIISYTPFFPPFFINVIAENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISRHCLPSQT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query442 2.2.26 [Sep-21-2011]
Q15751 4861 Probable E3 ubiquitin-pro yes no 0.680 0.061 0.334 5e-31
Q9FN03440 Ultraviolet-B receptor UV no no 0.753 0.756 0.290 5e-31
Q9VR91 4912 Probable E3 ubiquitin-pro yes no 0.671 0.060 0.328 3e-28
Q4U2R1 4836 E3 ubiquitin-protein liga no no 0.714 0.065 0.313 5e-27
O95714 4834 E3 ubiquitin-protein liga no no 0.714 0.065 0.310 1e-26
Q6PAV2 1057 Probable E3 ubiquitin-pro no no 0.742 0.310 0.280 2e-23
Q5PQN1 1057 Probable E3 ubiquitin-pro no no 0.742 0.310 0.282 3e-23
Q5GLZ8 1057 Probable E3 ubiquitin-pro no no 0.742 0.310 0.282 5e-23
Q9UII4 1024 E3 ISG15--protein ligase no no 0.524 0.226 0.299 8e-23
Q3MHW0464 Secretion-regulating guan no no 0.832 0.793 0.261 1e-22
>sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 Back     alignment and function desciption
 Score =  135 bits (341), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 110/329 (33%), Positives = 162/329 (49%), Gaps = 28/329 (8%)

Query: 36  VWSWGAGTDGQLGTGRLHDELSPQLLNLS---SLSSVSMLACGGAHVLALTSPSSVIGGK 92
           V + G G+ G+LG G  +++ + + L      S+  VS       H LA T+      G+
Sbjct: 424 VRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTE-----GE 478

Query: 93  VFSWGRGSSGQLGHGEMVDALYPKPVT-FFDGHRYTITHISAGWNHSGFVSDSGCLFTCG 151
           VFSWG G  G+LGHG      YPK +     G    +  +SAG+ HS  V++ G L+T G
Sbjct: 479 VFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGK--VVVCVSAGYRHSAAVTEDGELYTWG 536

Query: 152 DGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRG 211
           +G FG+LGHGD  S + P  V      NV +++CG  H++ L KD  G  V+ FG G  G
Sbjct: 537 EGDFGRLGHGDSNSRNIPTLVKDI--SNVGEVSCGSSHTIALSKD--GRTVWSFGGGDNG 592

Query: 212 QLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWG----RGFNSTS 267
           +LG        V  P+V   L  + I  + A    S AL++ G +Y WG     G  S+ 
Sbjct: 593 KLG--HGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCGACLGCGSSE 650

Query: 268 DVNCPQSLPSSLSFSQ---AALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLS 324
                  L   L+ ++    ++G +H L L+ D EV   G +  G      + +ST P++
Sbjct: 651 ATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCG---QGNSTGPIT 707

Query: 325 VALEKVSNLDGVKVIQIAAGAEHSAVVTG 353
              +KVS LDG+ + QI+AG  HS   T 
Sbjct: 708 KP-KKVSGLDGIAIQQISAGTSHSLAWTA 735
Involved in membrane trafficking via some guanine nucleotide exchange factor (GEF) activity and its ability to bind clathrin. Acts as a GEF for Arf and Rab, by exchanging bound GDP for free GTP. Binds phosphatidylinositol 4,5-bisphosphate, which is required for GEF activity. May also act as a E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 Back     alignment and function description
>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 Back     alignment and function description
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 Back     alignment and function description
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 Back     alignment and function description
>sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 Back     alignment and function description
>sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 Back     alignment and function description
>sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1 Back     alignment and function description
>sp|Q9UII4|HERC5_HUMAN E3 ISG15--protein ligase HERC5 OS=Homo sapiens GN=HERC5 PE=1 SV=2 Back     alignment and function description
>sp|Q3MHW0|SRGEF_BOVIN Secretion-regulating guanine nucleotide exchange factor OS=Bos taurus GN=SERGEF PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query442
225424889400 PREDICTED: E3 ubiquitin-protein ligase H 0.861 0.952 0.609 1e-139
296086438405 unnamed protein product [Vitis vinifera] 0.886 0.967 0.607 1e-138
224134180390 predicted protein [Populus trichocarpa] 0.830 0.941 0.596 1e-130
356497843388 PREDICTED: probable E3 ubiquitin-protein 0.861 0.981 0.576 1e-126
357486571 615 RCC1 and BTB domain-containing protein [ 0.864 0.621 0.559 1e-125
8778856441 T7N9.12 [Arabidopsis thaliana] 0.909 0.911 0.568 1e-125
297850954388 regulator of chromosome condensation fam 0.823 0.938 0.586 1e-124
255558248387 protein with unknown function [Ricinus c 0.861 0.984 0.568 1e-124
356501930388 PREDICTED: probable E3 ubiquitin-protein 0.852 0.971 0.575 1e-123
15223423386 regulator of chromosome condensation-lik 0.839 0.961 0.587 1e-123
>gi|225424889|ref|XP_002269566.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 265/435 (60%), Positives = 313/435 (71%), Gaps = 54/435 (12%)

Query: 25  EEEEEEQQVVKVWSWGAGTDGQLGTGRLHDELSPQLLNLSSLSS---VSMLACGGAHVLA 81
           E E ++   V++WSWGAGTDGQLGT RL DE  PQLL+L   SS   +S+LACGGAHVLA
Sbjct: 3   ENERDKGGEVEIWSWGAGTDGQLGTTRLEDEHLPQLLDLPRFSSAGPISLLACGGAHVLA 62

Query: 82  LTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFV 141
           LT+      GKV +WGRG+SGQLGHG+MV +L PK V   +   + +TH+SAGW+HSGFV
Sbjct: 63  LTTD-----GKVVTWGRGTSGQLGHGDMVSSLQPKHVKLLE--SFVMTHVSAGWSHSGFV 115

Query: 142 SDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQ 201
           SD+GCLFTCGDG+FGQLGHGD +SH SPVKVS F +K+V QIACGMRHSLVLLK   G+Q
Sbjct: 116 SDTGCLFTCGDGSFGQLGHGDCKSHCSPVKVSYFDSKHVDQIACGMRHSLVLLK---GDQ 172

Query: 202 VYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGR 261
           VYGFGSGKRGQLGVS D  RS+S+PQ T+GL  +EI+ I ANGD SAALSA GHLYTWGR
Sbjct: 173 VYGFGSGKRGQLGVSMDNTRSISVPQATVGLEGVEIISIDANGDHSAALSANGHLYTWGR 232

Query: 262 GFNSTSDVNCPQSLPSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTR 321
           GF STSDV+CP+ LPSSL F+Q ALGWNH+LVLTG GEV MLGG+ HG+L DP++ S  +
Sbjct: 233 GFGSTSDVHCPRCLPSSLCFTQVALGWNHMLVLTGGGEVFMLGGNRHGVLGDPQKGSQVK 292

Query: 322 PLSVA--------------LEKVSNLDGVKVIQIAAGAEHSAVVTGKFHWVRLFIISYTP 367
            LSV               LEKV  LDG+ V+QIAAGAEHSA+VT               
Sbjct: 293 HLSVIEVFLHGPEESREENLEKVQGLDGLNVVQIAAGAEHSALVT--------------- 337

Query: 368 FFPPFFINVIAENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEVFCGS 427
                      ENR I TWGWGEHGQLGLGNT DQI P+ V LG     + T ++V+CGS
Sbjct: 338 -----------ENRVIKTWGWGEHGQLGLGNTYDQISPQAVRLGHRLPGQHTMIKVYCGS 386

Query: 428 GFTYAISRHCLPSQT 442
           GFT+AI +  +PSQT
Sbjct: 387 GFTFAI-KAVIPSQT 400

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296086438|emb|CBI32027.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224134180|ref|XP_002321756.1| predicted protein [Populus trichocarpa] gi|222868752|gb|EEF05883.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356497843|ref|XP_003517766.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Glycine max] Back     alignment and taxonomy information
>gi|357486571|ref|XP_003613573.1| RCC1 and BTB domain-containing protein [Medicago truncatula] gi|355514908|gb|AES96531.1| RCC1 and BTB domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|8778856|gb|AAF79855.1|AC000348_8 T7N9.12 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297850954|ref|XP_002893358.1| regulator of chromosome condensation family protein [Arabidopsis lyrata subsp. lyrata] gi|297339200|gb|EFH69617.1| regulator of chromosome condensation family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255558248|ref|XP_002520151.1| protein with unknown function [Ricinus communis] gi|223540643|gb|EEF42206.1| protein with unknown function [Ricinus communis] Back     alignment and taxonomy information
>gi|356501930|ref|XP_003519776.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] Back     alignment and taxonomy information
>gi|15223423|ref|NP_174026.1| regulator of chromosome condensation-like protein [Arabidopsis thaliana] gi|124301018|gb|ABN04761.1| At1g27060 [Arabidopsis thaliana] gi|332192654|gb|AEE30775.1| regulator of chromosome condensation-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query442
TAIR|locus:2205794386 AT1G27060 [Arabidopsis thalian 0.690 0.790 0.576 1e-107
UNIPROTKB|E1C4H7 4863 HERC1 "Uncharacterized protein 0.669 0.060 0.330 3.5e-36
UNIPROTKB|F1MNS0 4857 HERC1 "Uncharacterized protein 0.669 0.060 0.327 4.4e-36
UNIPROTKB|F1S098 4859 HERC1 "Uncharacterized protein 0.669 0.060 0.327 4.4e-36
UNIPROTKB|Q15751 4861 HERC1 "Probable E3 ubiquitin-p 0.669 0.060 0.327 4.4e-36
TAIR|locus:2163986440 UVR8 "UVB-RESISTANCE 8" [Arabi 0.493 0.495 0.334 9.2e-36
UNIPROTKB|E2QYQ5 4863 HERC1 "Uncharacterized protein 0.669 0.060 0.323 1.3e-34
FB|FBgn0031107 4912 HERC2 "HECT and RLD domain con 0.671 0.060 0.309 2.4e-33
RGD|1306366 1203 Herc1 "HECT and RLD domain con 0.669 0.246 0.327 6.9e-32
RGD|1307989 3607 Herc2 "HECT and RLD domain con 0.685 0.084 0.291 8.5e-31
TAIR|locus:2205794 AT1G27060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 890 (318.4 bits), Expect = 1.0e-107, Sum P(2) = 1.0e-107
 Identities = 184/319 (57%), Positives = 217/319 (68%)

Query:    35 KVWSWGAGTDGQLGTGRLHDEXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIGGKVF 94
             +VWSWGAGTDGQLGT +L DE                 ACGGAHV+ALTS     GGKVF
Sbjct:    16 QVWSWGAGTDGQLGTTKLQDELLPQLLSLTSLPSISMLACGGAHVIALTS-----GGKVF 70

Query:    95 SWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGT 154
             +WGRGSSGQLGHG++++   PK V+FFD     IT  +AGW+HSGFVSDSGC+FTCG+G+
Sbjct:    71 TWGRGSSGQLGHGDILNITLPKLVSFFDDS--VITQAAAGWSHSGFVSDSGCIFTCGNGS 128

Query:   155 FGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLG 214
             FGQLGHGD  S S+P KVS F N +V  +ACGMRHSLVL     GNQV GFGSGKRGQLG
Sbjct:   129 FGQLGHGDTLSLSTPAKVSHFNNDSVKMVACGMRHSLVLFA---GNQVCGFGSGKRGQLG 185

Query:   215 VSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCXXX 274
              S DRI+SV+LP V  GL D+E+V ISANGD SAA+SA+G  ++WGRGF    DV+    
Sbjct:   186 FSSDRIKSVNLPCVVSGLKDVEVVRISANGDHSAAISADGQFFSWGRGFCGGPDVHAPQS 245

Query:   275 XXXXXXXXXXXLGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVAL-EKVSNL 333
                        +GWNH L+LT DGEV  LG +   +   PE+       S AL EKV + 
Sbjct:   246 LPSPLSFREVAVGWNHALLLTVDGEVFKLGST---LNKQPEKQQLQIDSSEALFEKVPDF 302

Query:   334 DGVKVIQIAAGAEHSAVVT 352
             DGVKV+QIAAGAEHSA VT
Sbjct:   303 DGVKVMQIAAGAEHSAAVT 321
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0008536 "Ran GTPase binding" evidence=ISS
UNIPROTKB|E1C4H7 HERC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MNS0 HERC1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1S098 HERC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q15751 HERC1 "Probable E3 ubiquitin-protein ligase HERC1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
TAIR|locus:2163986 UVR8 "UVB-RESISTANCE 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E2QYQ5 HERC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
FB|FBgn0031107 HERC2 "HECT and RLD domain containing protein 2 ortholog (H. sapiens)" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
RGD|1306366 Herc1 "HECT and RLD domain containing E3 ubiquitin protein ligase family member 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1307989 Herc2 "HECT and RLD domain containing E3 ubiquitin protein ligase 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query442
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 3e-32
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 4e-12
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-11
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-09
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 6e-05
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 8e-05
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 4e-04
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 4e-04
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 0.001
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 0.002
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score =  127 bits (321), Expect = 3e-32
 Identities = 107/464 (23%), Positives = 168/464 (36%), Gaps = 98/464 (21%)

Query: 18  NNAKPKIEEEEEEQQVVK---VWSWGAGTDGQLGTGRLHDEL---SPQLLNLSSLSSVSM 71
              K      +    +VK   V+SWG+    +LG G  +DE     PQL     +   S+
Sbjct: 49  IIRKVAQIINKHTHLLVKMASVYSWGSNGMNELGLG--NDETKVDRPQLNPFGRIDKASI 106

Query: 72  --LACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDA----------------L 113
             +ACGG H L L        G ++SWG    G LG     D                  
Sbjct: 107 IKIACGGNHSLGLDHD-----GNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELES 161

Query: 114 YPKPVTFFDG--HRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDY------RS 165
            P  V           +  ++ GW  S  ++  G +++ G    G+LG G Y        
Sbjct: 162 TPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSI 221

Query: 166 HSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLG--VSKDRIRSV 223
             +P+KV     K + Q+A G  H + L  +    +VYG+GS ++GQLG   S+     V
Sbjct: 222 QFTPLKVP---KKAIVQLAAGADHLIALTNE---GKVYGWGSNQKGQLGRPTSERLKLVV 275

Query: 224 SLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWG-------------RGFNSTSDVN 270
            +           I  ++   D S AL  +G +Y WG                  T+  N
Sbjct: 276 LVGDP---FAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPN 332

Query: 271 CPQSLPSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKV 330
             Q L S ++    + G +H L+L  DG +   G    G L   E ++          K+
Sbjct: 333 YKQ-LLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVST---PTKL 388

Query: 331 SNLDGVKVIQIAAGAEHSAVVTGKFHWVRLFIISYTPFFPPFFINVIAENRAIMTWGWGE 390
           S     K+ Q+A G  H+   T                          ++ ++ +WGWGE
Sbjct: 389 SVAI--KLEQVACGTHHNIART--------------------------DDGSVYSWGWGE 420

Query: 391 HGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAIS 434
           HG LG G     +    +         +    +  G G  +++ 
Sbjct: 421 HGNLGNGPKEADVLVPTLIRQPLLSGHNI---ILAGYGNQFSVI 461

Length = 476
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 442
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.95
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.9
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.89
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.78
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.24
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.21
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.01
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 99.0
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 98.93
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 98.9
KOG0315311 consensus G-protein beta subunit-like protein (con 94.48
KOG0646 476 consensus WD40 repeat protein [General function pr 93.57
KOG3669 705 consensus Uncharacterized conserved protein, conta 93.19
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 91.11
KOG3669 705 consensus Uncharacterized conserved protein, conta 89.99
KOG0291 893 consensus WD40-repeat-containing subunit of the 18 87.68
KOG0646476 consensus WD40 repeat protein [General function pr 86.32
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 86.01
KOG0315311 consensus G-protein beta subunit-like protein (con 85.14
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 83.76
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 81.01
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 80.41
PHA02713557 hypothetical protein; Provisional 80.13
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=5.6e-50  Score=381.40  Aligned_cols=366  Identities=27%  Similarity=0.467  Sum_probs=287.0

Q ss_pred             hhhcccccEEEEecCCCCCCCCCCCCCCc-cCCeEEecC--CCCcEEEEEeCCceeEEEeCCCcccCCeEEEEeCCCCCC
Q 013470           27 EEEEQQVVKVWSWGAGTDGQLGTGRLHDE-LSPQLLNLS--SLSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQ  103 (442)
Q Consensus        27 ~~~~~~~~~v~~~G~n~~gqLG~~~~~~~-~~p~~v~~~--~~~~i~~I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gq  103 (442)
                      .........||+||+|..+|||++...+. ..|+...+.  +...|++++||..|+++|++     ||+||+||.|..|+
T Consensus        61 ~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~-----Dg~lyswG~N~~G~  135 (476)
T COG5184          61 THLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDH-----DGNLYSWGDNDDGA  135 (476)
T ss_pred             hhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecC-----CCCEEEeccCcccc
Confidence            34556678999999999999999877766 678888776  55799999999999999999     99999999999999


Q ss_pred             CCCCCC-------------c---CeecceEeeecCC--CcceEEEEeecCceEEEEEeCCCEEEeCCCCCcccCCCCCCC
Q 013470          104 LGHGEM-------------V---DALYPKPVTFFDG--HRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRS  165 (442)
Q Consensus       104 lG~~~~-------------~---~~~~p~~i~~~~~--~~~~i~~vs~G~~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~  165 (442)
                      ||+...             .   ...+|..+.....  ...++++++||+.++++|+++|+||.||....+.++.+.+.+
T Consensus       136 Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~  215 (476)
T COG5184         136 LGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKN  215 (476)
T ss_pred             cccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccc
Confidence            998762             1   2567777776111  114699999999999999999999999999999998885543


Q ss_pred             ccc----ceEEeecCCCceEEEEeCCCceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeecc-CCCcEEEE
Q 013470          166 HSS----PVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGL-HDIEIVGI  240 (442)
Q Consensus       166 ~~~----p~~v~~~~~~~I~~I~~G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~-~~~~i~~i  240 (442)
                      ...    ++++..+ ...|+++++|.+|.++|++   +|++|+||++..||||+..  ......+..+..+ .-..|..|
T Consensus       216 s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~---~G~vy~~Gs~qkgqlG~~~--~e~~~~~~lv~~~f~i~~i~~v  289 (476)
T COG5184         216 SQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTN---EGKVYGWGSNQKGQLGRPT--SERLKLVVLVGDPFAIRNIKYV  289 (476)
T ss_pred             cccceeeeeeeecC-chheeeeccCCceEEEEec---CCcEEEecCCcccccCCch--hhhcccccccCChhhhhhhhhc
Confidence            322    3333332 3679999999999999999   9999999999999999874  2222333333332 22237889


Q ss_pred             EecCCeEEEEcCCCcEEEeeCCCCCCCCCC----------Ccc--ccCCCCCeeEEEeCCCeEEEEECCCcEEEEeCCCC
Q 013470          241 SANGDRSAALSAEGHLYTWGRGFNSTSDVN----------CPQ--SLPSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHH  308 (442)
Q Consensus       241 ~~g~~~s~~lt~~G~vy~wG~~~~~~~~~~----------~p~--~i~~~~~i~~i~~G~~~~~~l~~~G~vy~~G~n~~  308 (442)
                      +||.+|++||+++|++|+||.|.++|++..          .|.  .++....|..+++|..|+++|..+|.||+||.+..
T Consensus       290 acG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~  369 (476)
T COG5184         290 ACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDR  369 (476)
T ss_pred             ccCcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCcc
Confidence            999999999999999999999999998765          121  12345569999999999999999999999999999


Q ss_pred             cccCCCCCCCCCCccccceeeeccCCCccEEEEeecCCeeEEEeCcccceeeeEeccCCCCCccceeeeccCCcEEEEEC
Q 013470          309 GMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTGKFHWVRLFIISYTPFFPPFFINVIAENRAIMTWGW  388 (442)
Q Consensus       309 gqlG~~~~~~~~~~~~~~~~~~~~~~~~~I~~I~~G~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~  388 (442)
                      +|||.++....   ....+.++...  .++..++||..|.++.+                          .++.||.||+
T Consensus       370 ~qlg~~~~~~~---~~~~~~~ls~~--~~~~~v~~gt~~~~~~t--------------------------~~gsvy~wG~  418 (476)
T COG5184         370 GQLGIQEEITI---DVSTPTKLSVA--IKLEQVACGTHHNIART--------------------------DDGSVYSWGW  418 (476)
T ss_pred             ccccCccccee---ecCCccccccc--cceEEEEecCccceeec--------------------------cCCceEEecC
Confidence            99999875422   23334444433  27999999999999999                          9999999999


Q ss_pred             CCCCcccCCCCC-CccCcEEEecCccccCCCceEEEecCCCeEEEecCC
Q 013470          389 GEHGQLGLGNTC-DQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISRH  436 (442)
Q Consensus       389 n~~gqLG~g~~~-~~~~p~~v~~~~~~~~~~~~~~i~~G~~~t~~l~~~  436 (442)
                      +++|+||.|+.. +...|+.+.-+.  .....++..-||..+.++....
T Consensus       419 ge~gnlG~g~~~~~~~~pt~i~~~~--~~~~~~i~~g~~~~~~v~~~~~  465 (476)
T COG5184         419 GEHGNLGNGPKEADVLVPTLIRQPL--LSGHNIILAGYGNQFSVIEETM  465 (476)
T ss_pred             chhhhccCCchhhhccccccccccc--cCCCceEEeccCcceEEEecch
Confidence            999999998765 566677777311  0112567777777777666544

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query442
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 8e-27
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 1e-26
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 3e-26
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 4e-17
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 9e-26
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 3e-25
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 4e-17
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 1e-21
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 2e-11
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 1e-09
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 8e-05
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 4e-08
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 4e-08
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 9e-06
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure 
Iteration: 1

 Score =  118 bits (295), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 101/372 (27%), Positives = 157/372 (42%), Gaps = 56/372 (15%)
Query: 73  ACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHIS 132
           + G +H +AL S     G  V SWGRG  GQLGHG+  D   P  ++  DGH+  I  ++
Sbjct: 22  SAGASHSVALLS-----GDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQ--IVSVT 74
Query: 133 AGWNHSGFVSDSGC-LFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSL 191
            G +H+   S SG  +++ G G FG+LGHG+     +P+ + +     + QIACG  H L
Sbjct: 75  CGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCL 134
Query: 192 VLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALS 251
            +    +  +V  +G  + GQLG+       V  PQ       I I  ++A  + +AA++
Sbjct: 135 AV---TMEGEVQSWGRNQNGQLGLGDTEDSLV--PQKIQAFEGIRIKMVAAGAEHTAAVT 189
Query: 252 AEGHLYTWG------RGFNSTSD--VNCXXXXXXXXXXXXXXLGWNHVLVLTGDGEVLML 303
            +G LY WG       G    +D  V                 GW H + ++  G +   
Sbjct: 190 EDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTY 249
Query: 304 GGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTGKFHWVRLFII 363
           G S +G L   +      P      K+  L    + QI+ G  H+  +T           
Sbjct: 250 GWSKYGQLGHGDLEDHLIP-----HKLEALSNSFISQISGGWRHTMALT----------- 293
Query: 364 SYTPFFPPFFINVIAENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEV 423
                           +  +  WGW + GQ+G+GN  DQ  P  V     F +    ++V
Sbjct: 294 ---------------SDGKLYGWGWNKFGQVGVGNNLDQCSPVQV----RFPDDQKVVQV 334
Query: 424 FCGSGFTYAISR 435
            CG   T A++ 
Sbjct: 335 SCGWRHTLAVTE 346
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query442
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-99
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 4e-75
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 4e-56
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-38
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-07
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-96
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 3e-85
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-79
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 8e-71
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-58
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-24
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 5e-85
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 4e-60
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 5e-58
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 7e-32
3mvd_K423 Regulator of chromosome condensation; protein-DNA 9e-84
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-59
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 3e-55
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 7e-05
3of7_A473 Regulator of chromosome condensation; beta-propell 7e-66
3of7_A473 Regulator of chromosome condensation; beta-propell 8e-65
3of7_A473 Regulator of chromosome condensation; beta-propell 1e-07
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-43
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 4e-34
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-29
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-28
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 7e-16
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
 Score =  301 bits (772), Expect = 3e-99
 Identities = 94/412 (22%), Positives = 149/412 (36%), Gaps = 55/412 (13%)

Query: 35  KVWSWGAGTDGQLGTGRLHDELSPQLLNLSSLSSVSMLACGGAHVLALTSPSSVIGGKVF 94
            ++ WG    GQLG         P      +      L  G   + A+T+      GK++
Sbjct: 21  TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTA-----DGKLY 75

Query: 95  SWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGT 154
           + G G+ G+LG G       P  +            +++G  H   +S  G +++ G+  
Sbjct: 76  ATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAE 135

Query: 155 FGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLG 214
            G+LGHG+      P  + S     V  +A G  HS  +        +Y +G G+ G+LG
Sbjct: 136 DGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAA---GDLYTWGKGRYGRLG 192

Query: 215 VSKDRIRSVSLPQVTIGLHDIEIVGIS--ANGDRSAALSAEGHLYTWGR------GFNST 266
            S    +    P++   L    +V I+  +   ++  L+ +  +++WG       G   +
Sbjct: 193 HSDSEDQLK--PKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGS 250

Query: 267 SDVNCPQ--SLPSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLS 324
                P      + L   +   G    + LT  G V   G   +  L         RP  
Sbjct: 251 DGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRP-- 308

Query: 325 VALEKVSNLDGVKVIQIAAGAEHSAVVTGKFHWVRLFIISYTPFFPPFFINVIAENRAIM 384
               +V  L G KVI IA G+ H    T                          E+  + 
Sbjct: 309 ---RQVQGLQGKKVIAIATGSLHCVCCT--------------------------EDGEVY 339

Query: 385 TWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISRH 436
           TWG  + GQLG G T     P++V      Q +     V CGS  T A S  
Sbjct: 340 TWGDNDEGQLGDGTTNAIQRPRLV---AALQGKKVN-RVACGSAHTLAWSTS 387
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query442
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 96.75
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.38
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 96.16
3jrp_A379 Fusion protein of protein transport protein SEC13 96.1
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 96.02
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 95.72
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 95.58
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 95.25
3jro_A 753 Fusion protein of protein transport protein SEC13 95.17
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 94.89
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 94.48
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 94.32
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 94.3
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 93.9
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 93.26
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 93.15
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 93.1
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 92.92
3jrp_A379 Fusion protein of protein transport protein SEC13 91.53
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 90.82
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 90.38
3jro_A 753 Fusion protein of protein transport protein SEC13 90.12
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 89.8
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 89.74
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 88.97
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 88.88
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 86.19
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 85.97
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 85.61
1pgu_A615 Actin interacting protein 1; WD repeat, seven-blad 84.88
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 82.82
4g56_B357 MGC81050 protein; protein arginine methyltransfera 82.17
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 80.71
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 80.3
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 80.24
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=5.8e-70  Score=542.54  Aligned_cols=364  Identities=25%  Similarity=0.384  Sum_probs=324.2

Q ss_pred             hcccccEEEEecCCCCCCCCCCCCCCccCCeEEecCCCCcEEEEEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCC
Q 013470           29 EEQQVVKVWSWGAGTDGQLGTGRLHDELSPQLLNLSSLSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGE  108 (442)
Q Consensus        29 ~~~~~~~v~~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~  108 (442)
                      ..+++++||+||+|.+||||.++..+...|+++..+...+|++|+||..|+++|++     ||+||+||.|.+||||.+.
T Consensus        15 ~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~-----~G~v~~wG~n~~GqLG~g~   89 (389)
T 3kci_A           15 YFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTA-----DGKLYATGYGAGGRLGIGG   89 (389)
T ss_dssp             ------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEET-----TSCEEEEECCGGGTTSSSS
T ss_pred             eECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcC-----CCcEEEEECCCCCCCCCCC
Confidence            44778999999999999999988888888999887777799999999999999999     9999999999999999999


Q ss_pred             CcCeecceEeeecCCCcceEEEEeecCceEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCC
Q 013470          109 MVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMR  188 (442)
Q Consensus       109 ~~~~~~p~~i~~~~~~~~~i~~vs~G~~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~  188 (442)
                      ......|+++..+.....++++|+||.+|+++|+++|+||+||.|.+||||.+.......|..+..+.+.+|++|+||..
T Consensus        90 ~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~  169 (389)
T 3kci_A           90 TESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGA  169 (389)
T ss_dssp             SCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS
T ss_pred             cCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcC
Confidence            88899999999887755677899999999999999999999999999999999988888999999888889999999999


Q ss_pred             ceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecC--CeEEEEcCCCcEEEeeCCCCCC
Q 013470          189 HSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANG--DRSAALSAEGHLYTWGRGFNST  266 (442)
Q Consensus       189 h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~--~~s~~lt~~G~vy~wG~~~~~~  266 (442)
                      |+++|++   +|+||+||.|.+||||.+..  .....|..+..+...+|++|+||.  .|+++|+++|+||+||.|.++|
T Consensus       170 hs~alt~---~G~v~~wG~n~~GqLG~~~~--~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~Gq  244 (389)
T 3kci_A          170 HSACVTA---AGDLYTWGKGRYGRLGHSDS--EDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGK  244 (389)
T ss_dssp             EEEEEET---TSCEEEEECCGGGTTCSSSC--CCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGT
T ss_pred             eEEEEeC---CCeEEEeCCCCCCCcCCCCC--cccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCC
Confidence            9999999   99999999999999999843  445678888888888999999995  8999999999999999999999


Q ss_pred             CCCC------CccccC--CCCCeeEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCCCCccccceeeeccCCCccE
Q 013470          267 SDVN------CPQSLP--SSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKV  338 (442)
Q Consensus       267 ~~~~------~p~~i~--~~~~i~~i~~G~~~~~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~I  338 (442)
                      ++..      .|..+.  ...+|++|+||..|+++|+++|+||+||.|.+||||.+....     ...|.++..+.+.+|
T Consensus       245 LG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~-----~~~P~~v~~l~~~~v  319 (389)
T 3kci_A          245 LGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDH-----VRRPRQVQGLQGKKV  319 (389)
T ss_dssp             TSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCC-----EEEEEECGGGTTCCE
T ss_pred             CCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCcc-----ccCCeEeccCCCCCE
Confidence            8753      344443  455799999999999999999999999999999999986543     445777888888899


Q ss_pred             EEEeecCCeeEEEeCcccceeeeEeccCCCCCccceeeeccCCcEEEEECCCCCcccCCCCCCccCcEEEecCccccCCC
Q 013470          339 IQIAAGAEHSAVVTGKFHWVRLFIISYTPFFPPFFINVIAENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRD  418 (442)
Q Consensus       339 ~~I~~G~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~gqLG~g~~~~~~~p~~v~~~~~~~~~~  418 (442)
                      ++|+||.+|+++++                          ++|+||+||+|.+||||.++..+...|+.|..+...    
T Consensus       320 ~~ia~G~~h~~al~--------------------------~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~----  369 (389)
T 3kci_A          320 IAIATGSLHCVCCT--------------------------EDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGK----  369 (389)
T ss_dssp             EEEEECSSEEEEEE--------------------------TTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTS----
T ss_pred             EEEEeccCeEEEEC--------------------------CCCCEEEeeCCCCCcCCCCCCCCccCcEEecccCCC----
Confidence            99999999999999                          999999999999999999999999999999876544    


Q ss_pred             ceEEEecCCCeEEEecCCc
Q 013470          419 TQLEVFCGSGFTYAISRHC  437 (442)
Q Consensus       419 ~~~~i~~G~~~t~~l~~~~  437 (442)
                      +|.+|+||.+||++|+++.
T Consensus       370 ~v~~va~G~~ht~al~~~~  388 (389)
T 3kci_A          370 KVNRVACGSAHTLAWSTSK  388 (389)
T ss_dssp             CCCEEEEETTEEEEECC--
T ss_pred             CEEEEEecCCcEEEEecCC
Confidence            8999999999999999864
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 442
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 5e-30
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 4e-17
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 9e-16
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 5e-07
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 1e-06
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 9e-06
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 3e-09
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 1e-07
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 2e-05
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (295), Expect = 5e-30
 Identities = 79/422 (18%), Positives = 139/422 (32%), Gaps = 62/422 (14%)

Query: 35  KVWSWGAGTDGQLGTG-RLHDELSPQLLNLSSLSSVSMLACGGAHVLALTSPSSVIGGKV 93
            V + G G  GQLG G  + +   P L+++     V     GG H + L+       G+V
Sbjct: 16  LVLTLGQGDVGQLGLGENVMERKKPALVSI--PEDVVQAEAGGMHTVCLSK-----SGQV 68

Query: 94  FSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDG 153
           +S+G    G LG    V+     P       +            +        L+     
Sbjct: 69  YSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRD 128

Query: 154 TFGQLGHGD----------YRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVY 203
             G +G  +           +     VKV+S  +  V   A G  ++L   +     +V 
Sbjct: 129 NNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVP 188

Query: 204 GFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGF 263
              + + G+ G+ +  +    + +       +           + A+S EGH+Y +G   
Sbjct: 189 ELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSN 248

Query: 264 NSTSDVN----------CPQSLPSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSD 313
                                  S+ S+   + G +H + +  +G+   LG + +G L  
Sbjct: 249 YHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGL 308

Query: 314 PERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTGKFHWVRLFIISYTPFFPPFF 373
            E        +     +S L  V    +A GA     VT                     
Sbjct: 309 GEGAEEKSIPT----LISRLPAVS--SVACGASVGYAVT--------------------- 341

Query: 374 INVIAENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAI 433
                ++  +  WG G + QLG G   D   P  + +G + +NR   L V  G   T  +
Sbjct: 342 -----KDGRVFAWGMGTNYQLGTGQDEDAWSPVEM-MGKQLENR-VVLSVSSGGQHTVLL 394

Query: 434 SR 435
            +
Sbjct: 395 VK 396
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query442
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.52
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 96.34
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 92.31
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 85.39
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 85.28
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 84.95
d2bbkh_355 Methylamine dehydrogenase, H-chain {Paracoccus den 83.99
d1tbga_340 beta1-subunit of the signal-transducing G protein 81.59
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 80.39
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-58  Score=458.13  Aligned_cols=365  Identities=24%  Similarity=0.334  Sum_probs=296.7

Q ss_pred             hcccccEEEEecCCCCCCCCCCCCC-CccCCeEEecCCCCcEEEEEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCC
Q 013470           29 EEQQVVKVWSWGAGTDGQLGTGRLH-DELSPQLLNLSSLSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHG  107 (442)
Q Consensus        29 ~~~~~~~v~~~G~n~~gqLG~~~~~-~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~  107 (442)
                      .-+++|+||+||.|.+||||.++.. +...|.++..+  .+|++|+||..|+++|++     +|+||+||.|.+||||.+
T Consensus        10 ~~~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~--~~i~~ia~G~~h~~al~~-----~G~vy~wG~n~~GQLG~g   82 (401)
T d1a12a_          10 HSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP--EDVVQAEAGGMHTVCLSK-----SGQVYSFGCNDEGALGRD   82 (401)
T ss_dssp             CCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCS--SCEEEEEECSSEEEEEET-----TSCEEEEECCTTSTTCSC
T ss_pred             EECCCCEEEEEeCCCCCCCCCCCCCceeccCEEeCCC--CCeEEEEeCCCEEEEEeC-----CCEEEEEeCCCCCCCCcc
Confidence            4478999999999999999998765 46678777655  589999999999999999     999999999999999999


Q ss_pred             CCcCeecceEeeecCCCcceEEEEeecCceEEEEEeCCCEEEeCCCCCcccCCCCCCC-cccceEEeecCCCceEEEEeC
Q 013470          108 EMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRS-HSSPVKVSSFVNKNVHQIACG  186 (442)
Q Consensus       108 ~~~~~~~p~~i~~~~~~~~~i~~vs~G~~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~-~~~p~~v~~~~~~~I~~I~~G  186 (442)
                      .......|.+......  .+|++|+||..|+++++++|+||+||.+...+.+...... ...+..+....+.+|++|+||
T Consensus        83 ~~~~~~~~~~~~~~~~--~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g  160 (401)
T d1a12a_          83 TSVEGSEMVPGKVELQ--EKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASG  160 (401)
T ss_dssp             CCSTTGGGSCEECCCC--SCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEEC
T ss_pred             cccccccccccccccc--cceeeecccccceeeccccccceeccccccccccccccCCccccceeeeeccCCceeEEEec
Confidence            8777666666655555  6799999999999999999999999987766555433322 223333444455689999999


Q ss_pred             CCceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCc---------eeecCeEeec-----cCCCcEEEEEecCCeEEEEcC
Q 013470          187 MRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIR---------SVSLPQVTIG-----LHDIEIVGISANGDRSAALSA  252 (442)
Q Consensus       187 ~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~---------~~~~p~~v~~-----~~~~~i~~i~~g~~~s~~lt~  252 (442)
                      ..|+++++.   +|++|+||.|.++|||.......         ....|..+..     ....+|++|+||..|+++|++
T Consensus       161 ~~~~~~~~~---~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~  237 (401)
T d1a12a_         161 NDHLVMLTA---DGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISH  237 (401)
T ss_dssp             SSEEEEEET---TSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEET
T ss_pred             ccceeeeec---CCcccccccCCccccCCCCccccccCCccccccccccceeeccccCCCCCceEEEEEecCCeEEEEec
Confidence            999999999   99999999999999997642211         1123333322     234579999999999999999


Q ss_pred             CCcEEEeeCCCCCCCCCCCcc------cc----CCCCCeeEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCCCCc
Q 013470          253 EGHLYTWGRGFNSTSDVNCPQ------SL----PSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRP  322 (442)
Q Consensus       253 ~G~vy~wG~~~~~~~~~~~p~------~i----~~~~~i~~i~~G~~~~~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~~  322 (442)
                      +|+||.||.+.+++++.....      .+    .....++++++|..|+++++++|+||+||.|.+||||.++...    
T Consensus       238 ~g~v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~----  313 (401)
T d1a12a_         238 EGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAE----  313 (401)
T ss_dssp             TCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCC----
T ss_pred             CCeEeeecccceecccccccccceeccccccccccceeEEEEeeeccceeeeccCCCEEEecccccCccCCCcccc----
Confidence            999999999999887653221      11    2346799999999999999999999999999999999986543    


Q ss_pred             cccceeeeccCCCccEEEEeecCCeeEEEeCcccceeeeEeccCCCCCccceeeeccCCcEEEEECCCCCcccCCCCCCc
Q 013470          323 LSVALEKVSNLDGVKVIQIAAGAEHSAVVTGKFHWVRLFIISYTPFFPPFFINVIAENRAIMTWGWGEHGQLGLGNTCDQ  402 (442)
Q Consensus       323 ~~~~~~~~~~~~~~~I~~I~~G~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~gqLG~g~~~~~  402 (442)
                      ....|..++.+.  +|++|+||.+|+++|+                          ++|+||+||+|.+||||+|++.+.
T Consensus       314 ~~~~P~~i~~~~--~i~~Is~G~~hs~alt--------------------------~dG~v~~WG~n~~GQLG~G~~~~~  365 (401)
T d1a12a_         314 EKSIPTLISRLP--AVSSVACGASVGYAVT--------------------------KDGRVFAWGMGTNYQLGTGQDEDA  365 (401)
T ss_dssp             CEEEEEECCSSS--SEEEEEECSSEEEEEE--------------------------TTSCEEEEECCTTSTTCSSSCSCE
T ss_pred             cccCCEEcCCCC--CeEEEEeeCCEEEEEe--------------------------CCCeEEEEecCCCCCCCCCCCCCE
Confidence            233466666554  7999999999999999                          999999999999999999999999


Q ss_pred             cCcEEEecCccccCCCceEEEecCCCeEEEecCCccC
Q 013470          403 IHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISRHCLP  439 (442)
Q Consensus       403 ~~p~~v~~~~~~~~~~~~~~i~~G~~~t~~l~~~~~~  439 (442)
                      ..|++|....  .+..+|++|+||.+||++|+++.-.
T Consensus       366 ~~P~~v~~~~--~~~~~v~~v~~G~~hs~~l~~d~~~  400 (401)
T d1a12a_         366 WSPVEMMGKQ--LENRVVLSVSSGGQHTVLLVKDKEQ  400 (401)
T ss_dssp             EEEEECCSTT--TTTEEEEEEEECSSEEEEEEEECSC
T ss_pred             ecCEEeeccC--CCCCEEEEEEEccceEEEEEECCcc
Confidence            9998887543  2344899999999999999998654
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure