Citrus Sinensis ID: 013474

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440--
MTNKTRPFSWSRLLLNQNLKNPTKTPLSFSRKISTFPHFLTNQTPPNPLPPRTHFPNASQEYSAKPIYSFSRKISTFSHFRYNQTSKPSILLKSHFSTGSAYSRVAQDLLAEVEREKGREREARKRQGLDTKDIDQEDEEDYMGVGPLIEKLEKERLKDTGDLNLYEEPTDSDSDEDDERFSRDAVNKRFQVFQKKFKRHKELLQNFTEAETPDEAFKWMNKIDKFEQKHFPLRHEYRVIGELMNRLKEAEGKDKFMLQQKLNRAMRLVEWKEVYDPNNPTNYGVIRHEQAGPNVDAVENAEMDEEKRLLQGGVDDDDEEEFDDMKERDDILLERLNAIDKKLEEKLAELDHTFGKKGKLLEEEIRDLAEERNALTEKKRRPLYRKGFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQKVTW
cccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEccccccccccEEEEEEEEEEEcccccEEEEccccccHHHHHHHHcc
cccccccccHHHHHHHHccccccccccccccEEcccccccccccccccccccccccccccEcccccEEEcccEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccHHcHHHcccccHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccHEHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccEHEEEccccccHHHHHccccHHHHHHcccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHcccEEEEEEEccEEEEEccccEEEEEEEEEEEccccEEEccccccHHHHHHHHHHcc
mtnktrpfswsRLLLnqnlknptktplsfsrkistfphfltnqtppnplpprthfpnasqeysakpiysfSRKIStfshfrynqtskpsillkshfstgsaYSRVAQDLLAEVEREKGREREARkrqgldtkdidqedeedymgvgpLIEKLEKErlkdtgdlnlyeeptdsdsdedderfsRDAVNKRFQVFQKKFKRHKELLQnfteaetpdeAFKWMNkidkfeqkhfplrhEYRVIGELMNRLKEAEGKDKFMLQQKLNRAMRLVEWkevydpnnptnygvirheqagpnvdavenAEMDEEKRLlqggvddddeeefddMKERDDILLERLNAIDKKLEEKLAELDHTFGKKGKLLEEEIRDLAEERNALtekkrrplyrkgfdvklidvnrtckvtkggqVVKYTAMLACGNYHGVVGfakakgpavpialqkvtw
mtnktrpfswsrLLLNQNLKNPTKTPLSFSRKISTFPHFLTNQTPPNPLPPRTHFPNASQEYSAKPIYSFSRKISTFSHFRYNQTSKPSILLKSHFSTGSAYSRVAQDLLAEverekgrerearkrqgldtkdidqedeedymgvgplieklekerlkdtgdlnlyeeptdsdsdeddeRFSRDAVNKRFQVFQKKFKRHKELLqnfteaetpdeaFKWMNKIDKfeqkhfplrHEYRVIGELMNRLKEAEGKDKFMLQQKLNRAMRLVEWKEVYDPNNPTNYGVIRHEQAGPNVDAVENAEMDEEKrllqggvddddeeefDDMKERDDILLERLNAIDKKLEEKLAeldhtfgkkgkllEEEIRDLAEErnaltekkrrplyrkgfdvklidvnrtckvtkggqVVKYTAMLACGNYHGVVGFAKAKGPAVPialqkvtw
MTNKTRPFSWSRLLLNQNLKNPTKTPLSFSRKISTFPHFLtnqtppnplpprthfpnASQEYSAKPIYSFSRKISTFSHFRYNQTSKPSILLKSHFSTGSAYSRVAQDLLaeverekgrerearkrQGLDTKDIDQEDEEDYMGVGPLIEKLEKERLKDTGDLNLYEEPTdsdsdedderfsrdAVNkrfqvfqkkfkrhkELLQNFTEAETPDEAFKWMNKIDKFEQKHFPLRHEYRVIGELMNRLKEAEGKDKFMLQQKLNRAMRLVEWKEVYDPNNPTNYGVIRHEQAGPNVDAVENAEMDEEKRLLQGGVddddeeefddmkerddILLERLNAIDKKLEEKLAELDHTFGKKGKLLEEEIRDLAEERNALTEKKRRPLYRKGFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQKVTW
*************L****************************************************IYSFSRKISTFSHFRYNQT***SILLKSHF*********************************************************************************************FQVFQKKFKRHKELLQNFTEAETPDEAFKWMNKIDKFEQKHFPLRHEYRVIGELMNRLKEAEGKDKFMLQQKLNRAMRLVEWKEVYDPNNPTNYGVIR********************************************LLERLNAI******************************************PLYRKGFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIAL*****
***********RLLLNQNLK********FSRKISTFPHFLTNQTPPNPLP*****************************************************RVAQDLL***************************DEEDYMGVGPLIE**********************************AVNKRFQVFQKKFKRHKELLQNFTEAETPDEAFKWMNKIDKFEQKHFPLRHEYRVIGELMNRLKEAEGKDKFMLQQKLNRAMRLVEWKEVYDPNNPTNYGVIR*******************************************I***********************************************************KLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQKVTW
********SWSRLLLNQNLKNPTKTPLSFSRKISTFPHFLTNQTPPNPLPPRTHFPNASQEYSAKPIYSFSRKISTFSHFRYNQTSKPSILLKSHFSTGSAYSRVAQDLLAEVE*************GLDTKDIDQEDEEDYMGVGPLIEKLEKERLKDTGDLNLYE**************SRDAVNKRFQVFQKKFKRHKELLQNFTEAETPDEAFKWMNKIDKFEQKHFPLRHEYRVIGELMNRLKEAEGKDKFMLQQKLNRAMRLVEWKEVYDPNNPTNYGVIRHEQAGPNVDAVENAEMDEEKRLLQGGVDDDDEEEFDDMKERDDILLERLNAIDKKLEEKLAELDHTFGKKGKLLEEEIRDLAEERNALTEKKRRPLYRKGFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQKVTW
*******FSWSRLLLNQNLKNPTKTPLSFSRKISTFPHFLTNQTPPNPLPPRTHFPNASQEYSAKPIYSFSRKISTFSHFRYNQTSKP*I****HFSTGSAYSRVAQDLLAEVEREKGRERE****QGLDTKDIDQEDEEDYMGVGPLIEKLEKERLKD*******************ERFSRDAVNKRFQVFQKKFKRHKELLQNFTEAETPDEAFKWMNKIDKFEQKHFPLRHEYRVIGELMNRLKEAEGKDKFMLQQKLNRAMRLVEWKEVYDPNNPTNYGVIRHEQAGPNVDAVENA*************DDDDEEEFDDMKERDDILLERLNAIDKKLEEKLAELDHTFGKKGKLLEEEIRDLAEERNALTEKKRRPLYRKGFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQKVTW
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooo
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MTNKTRPFSWSRLLLNQNLKNPTKTPLSFSRKISTFPHFLTNQTPPNPLPPRTHFPNASQEYSAKPIYSFSRKISTFSHFRYNQTSKPSILLKSHFSTGSAYSRVxxxxxxxxxxxxxxxxxxxxxQGLDTKDIDQEDEEDYMGVGPLIEKLEKERLKDTGDLNLYEEPTDSDSDEDDERFSRDAVNKRFQVFQKKFKRHKELLQNFTEAETPDEAFKWMNKIDKFEQKHFPLRHEYRVIGELMNRLKEAEGKDKFMLQQKLNRAMRLVEWKEVYDPNNPTNYGVIRHEQAGPNVDAVENAEMDEEKRLLQGGVDDDDEEEFDDMKERDDILxxxxxxxxxxxxxxxxxxxxxFGKKxxxxxxxxxxxxxxxxxxxxxxxxPLYRKGFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQKVTW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query442 2.2.26 [Sep-21-2011]
Q1R0F8 166 30S ribosomal protein S5 yes no 0.124 0.331 0.456 7e-06
Q2S929 167 30S ribosomal protein S5 yes no 0.110 0.293 0.469 9e-06
A1TYL4 166 30S ribosomal protein S5 yes no 0.110 0.295 0.469 1e-05
Q5WZJ5 168 30S ribosomal protein S5 yes no 0.119 0.315 0.452 2e-05
Q5ZYM6 168 30S ribosomal protein S5 yes no 0.119 0.315 0.452 2e-05
A5IHP7 168 30S ribosomal protein S5 yes no 0.119 0.315 0.452 2e-05
Q5X842 168 30S ribosomal protein S5 yes no 0.119 0.315 0.452 2e-05
A7H0Z5147 30S ribosomal protein S5 yes no 0.124 0.374 0.4 2e-05
A7ZFZ5147 30S ribosomal protein S5 yes no 0.124 0.374 0.4 2e-05
A1T0C5 167 30S ribosomal protein S5 yes no 0.110 0.293 0.489 3e-05
>sp|Q1R0F8|RS5_CHRSD 30S ribosomal protein S5 OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=rpsE PE=3 SV=1 Back     alignment and function desciption
 Score = 52.4 bits (124), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)

Query: 385 RKGFDV--KLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
           +KG D+  KL+ VNR  KV KGG++  +TA+   G+  G VGF + K   VP+A+QK
Sbjct: 6   QKGGDLQEKLVQVNRVAKVVKGGRIFGFTALTVVGDGSGRVGFGRGKAREVPVAIQK 62
Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body.
Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) (taxid: 290398)
>sp|Q2S929|RS5_HAHCH 30S ribosomal protein S5 OS=Hahella chejuensis (strain KCTC 2396) GN=rpsE PE=3 SV=1 Back     alignment and function description
>sp|A1TYL4|RS5_MARAV 30S ribosomal protein S5 OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=rpsE PE=3 SV=1 Back     alignment and function description
>sp|Q5WZJ5|RS5_LEGPL 30S ribosomal protein S5 OS=Legionella pneumophila (strain Lens) GN=rpsE PE=3 SV=1 Back     alignment and function description
>sp|Q5ZYM6|RS5_LEGPH 30S ribosomal protein S5 OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=rpsE PE=3 SV=1 Back     alignment and function description
>sp|A5IHP7|RS5_LEGPC 30S ribosomal protein S5 OS=Legionella pneumophila (strain Corby) GN=rpsE PE=3 SV=1 Back     alignment and function description
>sp|Q5X842|RS5_LEGPA 30S ribosomal protein S5 OS=Legionella pneumophila (strain Paris) GN=rpsE PE=3 SV=1 Back     alignment and function description
>sp|A7H0Z5|RS5_CAMC5 30S ribosomal protein S5 OS=Campylobacter curvus (strain 525.92) GN=rpsE PE=3 SV=1 Back     alignment and function description
>sp|A7ZFZ5|RS5_CAMC1 30S ribosomal protein S5 OS=Campylobacter concisus (strain 13826) GN=rpsE PE=3 SV=1 Back     alignment and function description
>sp|A1T0C5|RS5_PSYIN 30S ribosomal protein S5 OS=Psychromonas ingrahamii (strain 37) GN=rpsE PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query442
255566086502 30S ribosomal protein S5, putative [Rici 0.889 0.782 0.699 1e-156
449468275500 PREDICTED: uncharacterized protein LOC10 0.891 0.788 0.684 1e-152
225446625499 PREDICTED: uncharacterized protein LOC10 0.864 0.765 0.686 1e-145
302143430404 unnamed protein product [Vitis vinifera] 0.674 0.737 0.822 1e-130
224124080518 predicted protein [Populus trichocarpa] 0.889 0.758 0.597 1e-128
147853974 1185 hypothetical protein VITISV_042576 [Viti 0.812 0.302 0.642 1e-125
326490712521 predicted protein [Hordeum vulgare subsp 0.760 0.644 0.613 1e-115
5042423495 Hypothetical Protein [Arabidopsis thalia 0.902 0.806 0.573 1e-115
18408151515 Ribosomal protein S5 family protein [Ara 0.900 0.772 0.575 1e-115
357519961502 30S ribosomal protein S5 [Medicago trunc 0.814 0.717 0.633 1e-114
>gi|255566086|ref|XP_002524031.1| 30S ribosomal protein S5, putative [Ricinus communis] gi|223536758|gb|EEF38399.1| 30S ribosomal protein S5, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 305/436 (69%), Positives = 341/436 (78%), Gaps = 43/436 (9%)

Query: 7   PFSWSRLLLNQNLKNPTKTPLSFSRKISTFPHFLTNQTPPNPLPPRTHFPNASQEYSAKP 66
           P SWSR+LL Q+LK P K                       P  P+              
Sbjct: 3   PKSWSRILLYQSLKKPKK-----------------------PFIPQ-------------- 25

Query: 67  IYSFSRKISTFSHFRYNQTSKPSILLKSHFSTGSAYS-RVAQDLLAEVEREKGREREARK 125
               SRKISTFS F   QT+      K+HFST  A S RV +DLLAE+EREK REREARK
Sbjct: 26  ---LSRKISTFSQFPPTQTAPFFNSSKTHFSTSPAASDRVIKDLLAELEREKQREREARK 82

Query: 126 RQGLDTKDIDQEDEEDYMGVGPLIEKLEKERLKD-TGDLNLYEEPTDSDSDEDDERFSRD 184
           R GLDTKDIDQEDEEDYMGVG LI+KLEKE+LK   GDLNL EEP+DS+SD+DDERF R+
Sbjct: 83  RTGLDTKDIDQEDEEDYMGVGLLIDKLEKEKLKPFKGDLNLREEPSDSESDDDDERFGRE 142

Query: 185 AVNKRFQVFQKKFKRHKELLQNFTEAETPDEAFKWMNKIDKFEQKHFPLRHEYRVIGELM 244
           A+ KRF++F+KK +RH +LL NF  +ET D+AFKWMN+IDKFE+KHF LR EYRVIGELM
Sbjct: 143 ALTKRFELFKKKHERHTKLLDNFVASETLDDAFKWMNRIDKFEEKHFKLRPEYRVIGELM 202

Query: 245 NRLKEAEGKDKFMLQQKLNRAMRLVEWKEVYDPNNPTNYGVIRHEQAGPNVDAVENAEMD 304
           NRLK AEGKDKF+LQQKLNRAMRLVEWKE YDPN P NYGVI+H Q G NVD + NA  +
Sbjct: 203 NRLKVAEGKDKFILQQKLNRAMRLVEWKEAYDPNIPANYGVIQHAQVGSNVDIMNNAGFE 262

Query: 305 EEKRLLQGGVDDDDEEEFDDMKERDDILLERLNAIDKKLEEKLAELDHTFGKKGKLLEEE 364
            EK+++QGG  DDD EEFDDMKERDDILLE+LNAIDK+LEEKLAELDHTFGKKGKLLEEE
Sbjct: 263 REKQMIQGG-SDDDVEEFDDMKERDDILLEKLNAIDKQLEEKLAELDHTFGKKGKLLEEE 321

Query: 365 IRDLAEERNALTEKKRRPLYRKGFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVG 424
           IRDLAEERN+LTEKKRRP+YRKGFDVKLIDVNRTCKVTKGGQVVKYTA+LACGNYHGVVG
Sbjct: 322 IRDLAEERNSLTEKKRRPMYRKGFDVKLIDVNRTCKVTKGGQVVKYTAILACGNYHGVVG 381

Query: 425 FAKAKGPAVPIALQKV 440
           FAKAKGPAVP+ALQK 
Sbjct: 382 FAKAKGPAVPVALQKA 397

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449468275|ref|XP_004151847.1| PREDICTED: uncharacterized protein LOC101205390 [Cucumis sativus] gi|449524434|ref|XP_004169228.1| PREDICTED: uncharacterized LOC101205390 [Cucumis sativus] Back     alignment and taxonomy information
>gi|225446625|ref|XP_002276769.1| PREDICTED: uncharacterized protein LOC100267778 [Vitis vinifera] Back     alignment and taxonomy information
>gi|302143430|emb|CBI21991.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224124080|ref|XP_002319240.1| predicted protein [Populus trichocarpa] gi|222857616|gb|EEE95163.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147853974|emb|CAN81695.1| hypothetical protein VITISV_042576 [Vitis vinifera] Back     alignment and taxonomy information
>gi|326490712|dbj|BAJ90023.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|5042423|gb|AAD38262.1|AC006193_18 Hypothetical Protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18408151|ref|NP_564842.1| Ribosomal protein S5 family protein [Arabidopsis thaliana] gi|48958531|gb|AAT47818.1| At1g64880 [Arabidopsis thaliana] gi|332196180|gb|AEE34301.1| Ribosomal protein S5 family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357519961|ref|XP_003630269.1| 30S ribosomal protein S5 [Medicago truncatula] gi|355524291|gb|AET04745.1| 30S ribosomal protein S5 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query442
TAIR|locus:2010896 515 AT1G64880 [Arabidopsis thalian 0.819 0.702 0.519 3.8e-95
TIGR_CMR|CBU_0255 168 CBU_0255 "ribosomal protein S5 0.124 0.327 0.454 4.3e-06
TIGR_CMR|CJE_1858147 CJE_1858 "ribosomal protein S5 0.124 0.374 0.381 1e-05
TIGR_CMR|CPS_0618 169 CPS_0618 "ribosomal protein S5 0.110 0.289 0.489 2.6e-05
UNIPROTKB|Q9KP01 167 rpsE "30S ribosomal protein S5 0.138 0.365 0.393 3.3e-05
TIGR_CMR|VC_2579 167 VC_2579 "ribosomal protein S5" 0.138 0.365 0.393 3.3e-05
TIGR_CMR|SO_0248 167 SO_0248 "ribosomal protein S5" 0.110 0.293 0.469 4.6e-05
UNIPROTKB|P0A7W1 167 rpsE "30S ribosomal subunit pr 0.110 0.293 0.469 9.6e-05
TIGR_CMR|SPO_0502 190 SPO_0502 "ribosomal protein S5 0.167 0.389 0.337 0.00018
TIGR_CMR|CHY_2292 167 CHY_2292 "ribosomal protein S5 0.110 0.293 0.428 0.00066
TAIR|locus:2010896 AT1G64880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 902 (322.6 bits), Expect = 3.8e-95, Sum P(2) = 3.8e-95
 Identities = 199/383 (51%), Positives = 240/383 (62%)

Query:    69 SFSRKISTF---SHFRYNQTSKPSILLKSHFSTG----SAYSRVAQDLLXXXXXXXXXXX 121
             +F R+IS +   S F  NQT   S      FS+     S   RV ++L+           
Sbjct:    36 TFPRRISGYYSSSFFPVNQTPWISSQRYRFFSSSTMSPSEADRVVRELIAEVEKEKQRER 95

Query:   122 XXXXXQGLDTKDIDQEDEEDYMGVGPLIEKLEKERLKDTGDLNLYEEPTXXXXXXXXXXX 181
                  QGLD KDID EDEEDY+G+ P IEKL+K+ LKD G+LN  EE +           
Sbjct:    96 EERQRQGLDYKDIDAEDEEDYLGIEPFIEKLKKQNLKDDGELNRREESSDSDSEYDEIDL 155

Query:   182 XXXAVNXXXXXXXXXXXXXXELLQNFTEAETPDEAFKWMNKIDKFEQKHFPLRHEYRVIG 241
                                 ELLQ  T++ET DEAF+WMNK+DKFE+KHF LR EYRVIG
Sbjct:   156 DEE--RKKEDIFNKKFQRHKELLQTLTKSETLDEAFRWMNKLDKFEEKHFKLRPEYRVIG 213

Query:   242 ELMNRLKEAEGKDKFMLQQKLNRAMRLVEWKEVYDPNNPTNYGVIRHEQAGPNVDAVENA 301
             ELMNRLK AEGK+KF+LQQKLNRAMRLVEWKE +DPNNP NYGVI         D V+  
Sbjct:   214 ELMNRLKVAEGKEKFVLQQKLNRAMRLVEWKEAFDPNNPANYGVIER-------DNVQGG 266

Query:   302 EMDEEKRLLQGGVXXXXXXXXXXXXXXXX-----ILLERLNAIDKKLEEKLAELDHTFGK 356
               + E+RL+  G                      ILLE+LNAIDKKLE KL+ELDHTFGK
Sbjct:   267 GEEREERLVADGPKDDNDDDDDEEEFDDMKERDDILLEKLNAIDKKLEIKLSELDHTFGK 326

Query:   357 KGKLLEEEIRDLAEERNALTEKKRRPLYRKGFDVKLIDVNRTCKVTKGGQVVKYTAMLAC 416
             KGK LEEEIR+LAE+RNALTEKKR+PLYRKG+DV +IDV + CKVTKGG+V +YTA++ C
Sbjct:   327 KGKRLEEEIRELAEDRNALTEKKRQPLYRKGYDVHVIDVKKVCKVTKGGRVERYTALMVC 386

Query:   417 GNYHGVVGFAKAKGPAVPIALQK 439
             GNY G++G+AKAK      A+QK
Sbjct:   387 GNYEGIIGYAKAKAETGQSAMQK 409
GO:0003723 "RNA binding" evidence=IEA
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=ISM
GO:0005840 "ribosome" evidence=IEA;ISS
GO:0006412 "translation" evidence=IEA;ISS
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA
GO:0005768 "endosome" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
TIGR_CMR|CBU_0255 CBU_0255 "ribosomal protein S5" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1858 CJE_1858 "ribosomal protein S5" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_0618 CPS_0618 "ribosomal protein S5" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KP01 rpsE "30S ribosomal protein S5" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2579 VC_2579 "ribosomal protein S5" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0248 SO_0248 "ribosomal protein S5" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|P0A7W1 rpsE "30S ribosomal subunit protein S5" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0502 SPO_0502 "ribosomal protein S5" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2292 CHY_2292 "ribosomal protein S5" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query442
COG0098 181 COG0098, RpsE, Ribosomal protein S5 [Translation, 1e-09
pfam0033367 pfam00333, Ribosomal_S5, Ribosomal protein S5, N-t 2e-09
PRK00550 168 PRK00550, rpsE, 30S ribosomal protein S5; Validate 4e-08
TIGR01021154 TIGR01021, rpsE_bact, ribosomal protein S5, bacter 8e-08
PRK04044 211 PRK04044, rps5p, 30S ribosomal protein S5P; Review 1e-05
TIGR01020 212 TIGR01020, rpsE_arch, ribosomal protein S5(archaea 1e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 6e-04
COG0589154 COG0589, UspA, Universal stress protein UspA and r 0.004
>gnl|CDD|223176 COG0098, RpsE, Ribosomal protein S5 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score = 56.8 bits (138), Expect = 1e-09
 Identities = 20/71 (28%), Positives = 35/71 (49%)

Query: 372 RNALTEKKRRPLYRKGFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGP 431
               +    +         K++D+NR  KV KGG+  +++A++  G+ +G VGF   K  
Sbjct: 8   IEFKSGLPIKEPEVDELLEKVVDINRVSKVVKGGRRFRFSALVVVGDRNGRVGFGIGKAK 67

Query: 432 AVPIALQKVTW 442
            VP A++K   
Sbjct: 68  EVPEAIRKAIE 78

Length = 181
>gnl|CDD|144065 pfam00333, Ribosomal_S5, Ribosomal protein S5, N-terminal domain Back     alignment and domain information
>gnl|CDD|234790 PRK00550, rpsE, 30S ribosomal protein S5; Validated Back     alignment and domain information
>gnl|CDD|130093 TIGR01021, rpsE_bact, ribosomal protein S5, bacterial/organelle type Back     alignment and domain information
>gnl|CDD|235213 PRK04044, rps5p, 30S ribosomal protein S5P; Reviewed Back     alignment and domain information
>gnl|CDD|233235 TIGR01020, rpsE_arch, ribosomal protein S5(archaeal type)/S2(eukaryote cytosolic type) Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223662 COG0589, UspA, Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 442
KOG2646396 consensus Ribosomal protein S5 [Translation, ribos 100.0
PTZ00070 257 40S ribosomal protein S2; Provisional 99.97
TIGR01020 212 rpsE_arch ribosomal protein S5(archaeal type)/S2(e 99.97
PRK04044 211 rps5p 30S ribosomal protein S5P; Reviewed 99.96
KOG0877 213 consensus 40S ribosomal protein S2/30S ribosomal p 99.91
COG0098 181 RpsE Ribosomal protein S5 [Translation, ribosomal 99.84
PF0033367 Ribosomal_S5: Ribosomal protein S5, N-terminal dom 99.79
CHL00138143 rps5 ribosomal protein S5; Validated 99.74
TIGR01021154 rpsE_bact ribosomal protein S5, bacterial/organell 99.74
PRK00550 168 rpsE 30S ribosomal protein S5; Validated 99.72
KOG2646 396 consensus Ribosomal protein S5 [Translation, ribos 98.6
>KOG2646 consensus Ribosomal protein S5 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=5.2e-40  Score=324.95  Aligned_cols=353  Identities=35%  Similarity=0.410  Sum_probs=305.7

Q ss_pred             CCCCcchhhHHHHhhccCCCCCCCCccc-ccccCCCC-------ccCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 013474            3 NKTRPFSWSRLLLNQNLKNPTKTPLSFS-RKISTFPH-------FLTNQTPPNPLPPRTHFPNASQEYSAKPIYSFSRKI   74 (442)
Q Consensus         3 ~~~~~~~~~r~l~~~~~~~~~~~~~~~~-~~~~~~~~-------f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (442)
                      .+|+..+|.|+++++++.+.+...+..+ ..++|+|.       ||.|||||       .+   ||              
T Consensus         1 ~~t~~s~~~r~~~Rr~~~s~~s~~lnt~~ss~~t~~~~~~ses~~~~~~t~~-------~~---sQ--------------   56 (396)
T KOG2646|consen    1 LRTRASSWPRLLSRRNPTSSFSRLLNTLDSSLKTRPRGYYSESLFPVNQTPW-------IS---SQ--------------   56 (396)
T ss_pred             CccchhhHHHHHhhcCCchhhhHHhhhcccccccccccccchhhccccCchh-------hh---cC--------------
Confidence            3689999999999999998877777777 67778755       88888877       22   11              


Q ss_pred             cccccccccCCCCcccccccccccCccchHHHHHHHHHHHHHHhHHHHHHHHcCCCCcCCCcccccccccchhHHHHHHH
Q 013474           75 STFSHFRYNQTSKPSILLKSHFSTGSAYSRVAQDLLAEVEREKGREREARKRQGLDTKDIDQEDEEDYMGVGPLIEKLEK  154 (442)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~v~~~ll~evere~~rer~~r~r~g~d~~d~d~e~eedy~gv~plieklek  154 (442)
                                   ++|-.++|+-+  ++++   +|++|++.+++++.+.|.+.+++.++|++++|++|  ..|+|.+   
T Consensus        57 -------------~~rP~st~~r~--~ad~---~l~a~~~~ek~~k~~~r~~e~~~~~~i~aq~ede~--~e~fi~~---  113 (396)
T KOG2646|consen   57 -------------QYRPFSTFSRS--EADR---ELIAEVAKEKQRKIEERQREKLDYKDIDAQDEDEY--REPFIWK---  113 (396)
T ss_pred             -------------ccccccccccc--cCCh---hhccchhhhhccccchhhhhcCCchhhhhhhhhhh--hhhcccC---
Confidence                         11112222222  2333   89999999999999999999999999999999999  9999988   


Q ss_pred             hhhcccCCCCCccCCCCCCCchhhcccChHHHHHhHHHHHHHHHhHHHHHHhhhhcCChhHHHHHhhhhhhhhhccCCCC
Q 013474          155 ERLKDTGDLNLYEEPTDSDSDEDDERFSRDAVNKRFQVFQKKFKRHKELLQNFTEAETPDEAFKWMNKIDKFEQKHFPLR  234 (442)
Q Consensus       155 ~~~k~~~~~~~~~e~tdsdsd~d~e~~~~d~~~kr~~~f~~k~~rh~ell~~f~~aetld~a~k~m~kid~fe~kh~~l~  234 (442)
                      ..|++.|.+++..+..|+++..++.  +.|.-.+..|.|.++++.|..+.+.-+.++++|+|+.||+.+|. |.+||+| 
T Consensus       114 ~pL~~~g~~k~~~ers~~~ke~~~~--dld~~r~~~D~~~k~~~G~~~~k~~~~k~g~~~e~~~~~n~~Df-e~r~l~l-  189 (396)
T KOG2646|consen  114 QPLKDDGELKRIAERSDSGKENDEI--DLDEERKKEDIFSKKERGHSGLKWTDTKLGLPDEAFRGMNYLDF-ELRHLEL-  189 (396)
T ss_pred             CccchhhhhhhhhcccCcccccccc--hhhhhhhhhhccCchhcCCCcccccccccCCCCccccCCCchhh-hHHHHHH-
Confidence            9999999999999999999998888  89999999999999999999999999999999999999999995 9999999 


Q ss_pred             chhhHHHHHHHHhHhhhccchhHHHHHHHhHhhhhhhhhccCCCCCCCccceeeccCCCChhhhhhhhhhHHH-hhhcCC
Q 013474          235 HEYRVIGELMNRLKEAEGKDKFMLQQKLNRAMRLVEWKEVYDPNNPTNYGVIRHEQAGPNVDAVENAEMDEEK-RLLQGG  313 (442)
Q Consensus       235 ~eyrvig~lmnrlk~aegkd~f~l~~klnra~rl~e~keaydp~npanyg~i~~~q~g~~~d~~~~a~~~~ek-~~~~g~  313 (442)
                        ||++++||||++.+.++..||+++++|+||+|+|||++ ||++||+|++|-++.       ..-.+.+++. +-|-|.
T Consensus       190 --vrr~~~~~~r~Gki~s~~~LVvvGn~nGaaG~~eGKa~-~~~s~A~~ka~~rAv-------~~l~~ieRyE~rTiygD  259 (396)
T KOG2646|consen  190 --VRRRVENQNRKGKIASMYALVVVGNGNGAAGLGEGKAA-DPNSPAIYKAIGRAV-------RNLGYIERYERRTIYGD  259 (396)
T ss_pred             --HHhhhhccccccceeeEEEEEEEecCCcceeeccccCc-CccCHHHHHHHHHHH-------hhcCccccccCcccccc
Confidence              99999999999999999999999999999999999999 999999999987654       4445566654 458887


Q ss_pred             CCCCChHHhhhhhhhhhHHHHHHHhHhHhhhhhhhhhHHhhccCCccchHHHHHHHHHhhhhhhhcccccccCCcceeee
Q 013474          314 VDDDDEEEFDDMKERDDILLERLNAIDKKLEEKLAELDHTFGKKGKLLEEEIRDLAEERNALTEKKRRPLYRKGFDVKLI  393 (442)
Q Consensus       314 ~d~~~eeEf~d~kEkd~i~itKLg~ivKk~EGKI~sLdeiF~k~~pIlE~EIVD~LeerN~Ltekkr~p~~lp~LkEeVL  393 (442)
                      -|++..+++.+|+++......++|.+..++...+--.|..+...+.+.+-+|+..+.++|.+++.+..+.+..++  .||
T Consensus       260 i~~r~~~~~l~mk~rp~GfGLrcn~il~kIC~~~GIKDis~kv~GsrN~m~i~k~~~e~l~~qet~qqlA~rkG~--hvV  337 (396)
T KOG2646|consen  260 IDDRFHEVRLDMKSRPDGFGLRCNPILIKICECAGIKDISGKVKGSRNEMNITKAAFEALALQETHQQLAYRKGL--HVV  337 (396)
T ss_pred             chhhhhhhhhhhhhCCCcccccccHHHHHHHHHhccccccceeeccchHHHHHHHHHHHHhhhhhhHHHHHhcCC--eEE
Confidence            799999999999999999999999999999999999999999999999999999999999999988887555433  788


Q ss_pred             EeecceeeccCCeeEEEEEEEEEecCCCceeeeeccCC
Q 013474          394 DVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGP  431 (442)
Q Consensus       394 dInRVQKmTKgGRRtRFrALVVVGNgNG~VGlGvGKAK  431 (442)
                      +|.        |++.+..     ||.-|.+|+...++.
T Consensus       338 dVr--------~e~~~~t-----~~vaspig~~~k~~e  362 (396)
T KOG2646|consen  338 DVR--------GEVYRLT-----GNVASPIGYAKKKAE  362 (396)
T ss_pred             Eec--------cceeecc-----cceecccchhhcCCc
Confidence            887        3333332     888999999988764

>PTZ00070 40S ribosomal protein S2; Provisional Back     alignment and domain information
>TIGR01020 rpsE_arch ribosomal protein S5(archaeal type)/S2(eukaryote cytosolic type) Back     alignment and domain information
>PRK04044 rps5p 30S ribosomal protein S5P; Reviewed Back     alignment and domain information
>KOG0877 consensus 40S ribosomal protein S2/30S ribosomal protein S5 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0098 RpsE Ribosomal protein S5 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00333 Ribosomal_S5: Ribosomal protein S5, N-terminal domain; InterPro: IPR013810 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>CHL00138 rps5 ribosomal protein S5; Validated Back     alignment and domain information
>TIGR01021 rpsE_bact ribosomal protein S5, bacterial/organelle type Back     alignment and domain information
>PRK00550 rpsE 30S ribosomal protein S5; Validated Back     alignment and domain information
>KOG2646 consensus Ribosomal protein S5 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query442
1p6g_E 166 Real Space Refined Coordinates Of The 30s Subunit F 1e-05
1vs5_E 167 Crystal Structure Of The Bacterial Ribosome From Es 1e-05
2gy9_E148 Structure Of The 30s Subunit Of A Pre-Translocation 1e-05
3fih_E150 Ternary Complex-Bound E.Coli 70s Ribosome. This Ent 1e-05
3e1a_S159 Structure Of The 30s Subunit And The Trnas Of E. Co 1e-05
3ohc_E160 Structure Of The Thermus Thermophilus Ribosome Comp 5e-05
1fka_E 162 Structure Of Functionally Activated Small Ribosomal 5e-05
1i94_E 161 Crystal Structures Of The Small Ribosomal Subunit W 5e-05
3fic_E151 T. Thermophilus 70s Ribosome In Complex With Mrna, 5e-05
1pns_E150 Crystal Structure Of A Streptomycin Dependent Ribos 6e-05
1qd7_D145 Partial Model For 30s Ribosomal Subunit Length = 14 7e-05
1pkp_A150 The Structure Of Ribosomal Protein S5 Reveals Sites 2e-04
1eg0_B148 Fitting Of Components With Known Structure Into An 2e-04
>pdb|1P6G|E Chain E, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 166 Back     alignment and structure 
Iteration: 1

 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 391 KLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
           KLI VNR  K  KGG++  +TA+   G+ +G VGF   K   VP A+QK
Sbjct: 13  KLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQK 61
>pdb|1VS5|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 167 Back     alignment and structure
>pdb|2GY9|E Chain E, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 148 Back     alignment and structure
>pdb|3FIH|E Chain E, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 150 Back     alignment and structure
>pdb|3E1A|S Chain S, Structure Of The 30s Subunit And The Trnas Of E. Coli Ribosome In Pre- Accommodation State Length = 159 Back     alignment and structure
>pdb|3OHC|E Chain E, Structure Of The Thermus Thermophilus Ribosome Complexed With Erythromycin. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. Length = 160 Back     alignment and structure
>pdb|1FKA|E Chain E, Structure Of Functionally Activated Small Ribosomal Subunit At 3.3 A Resolution Length = 162 Back     alignment and structure
>pdb|1I94|E Chain E, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 Length = 161 Back     alignment and structure
>pdb|3FIC|E Chain E, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 30s Subunit And The Ligands Length = 151 Back     alignment and structure
>pdb|1PNS|E Chain E, Crystal Structure Of A Streptomycin Dependent Ribosome From E. Coli, 30s Subunit Of 70s Ribosome. This File, 1pns, Contains The 30s Subunit, Two Trnas, And One Mrna Molecule. The 50s Ribosomal Subunit Is In File 1pnu. Length = 150 Back     alignment and structure
>pdb|1QD7|D Chain D, Partial Model For 30s Ribosomal Subunit Length = 145 Back     alignment and structure
>pdb|1PKP|A Chain A, The Structure Of Ribosomal Protein S5 Reveals Sites Of Interaction With 16s Rrna Length = 150 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query442
3bbn_E 308 Ribosomal protein S5; small ribosomal subunit, spi 2e-09
3r8n_E150 30S ribosomal protein S5; protein biosynthesis, RN 2e-09
1pkp_A150 Ribosomal protein S5; 2.80A {Geobacillus stearothe 2e-09
2vqe_E 162 30S ribosomal protein S5; tRNA-binding, rRNA-bindi 2e-09
3i1m_E 167 30S ribosomal protein S5; ribosome structure, prot 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
2xzm_E 296 Ribosomal protein S5 containing protein; ribosome, 9e-08
3iz6_E 274 40S ribosomal protein S2 (S5P); eukaryotic ribosom 2e-07
3u5c_C 254 Guanine nucleotide-binding protein subunit beta-L 4e-07
>3bbn_E Ribosomal protein S5; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 308 Back     alignment and structure
 Score = 57.6 bits (139), Expect = 2e-09
 Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 7/118 (5%)

Query: 322 FDDMKERDDILLERLNAIDKKLEEKLAELDHTFGKKGKLLEEEIRDLAEERNALTEKKRR 381
            D+     +   E +    ++L       +   G     ++ +I+      +    K ++
Sbjct: 93  VDEPPFESE---EEIALAYEELYGAAYSGESLLGNDVYAMDSKIKKATGFGS----KSKK 145

Query: 382 PLYRKGFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
              R GF+  ++ V R  KV KGG+ +++ A++  G+  G VG    K   V  A+QK
Sbjct: 146 EKIRDGFEENVVQVRRVTKVVKGGKHMRFRAIVVVGDKKGQVGVGVGKAKEVVSAVQK 203
>1pkp_A Ribosomal protein S5; 2.80A {Geobacillus stearothermophilus} SCOP: d.14.1.1 d.50.1.2 PDB: 1eg0_B 1dv4_E* 1qd7_D Length = 150 Back     alignment and structure
>2vqe_E 30S ribosomal protein S5; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1fka_E 1gix_H* 1hnw_E* 1hnx_E* 1hnz_E* 1hr0_E 1ibk_E* 1ibl_E* 1ibm_E 1jgo_H* 1jgp_H* 1jgq_H* 1ml5_H* 1xmo_E* 1xmq_E* 1xnq_E* 1xnr_E* 1yl4_H 2b64_E* 2b9m_E* ... Length = 162 Back     alignment and structure
>3i1m_E 30S ribosomal protein S5; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_E* 1vs5_E 3i1o_E 3i1q_E 3i1s_E 3i1z_E 3i21_E 3izv_I* 3izw_I* 3kc4_E 3or9_E 3ora_E 3sfs_E* 3uoq_E* Length = 167 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2xzm_E Ribosomal protein S5 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_E Length = 296 Back     alignment and structure
>3iz6_E 40S ribosomal protein S2 (S5P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_e 1s1h_E Length = 274 Back     alignment and structure
>3u5c_C Guanine nucleotide-binding protein subunit beta-L protein (ASC1, RACK1); translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_E 3o30_B 3o2z_B 3u5g_C 3jyv_E* 1s1h_E Length = 254 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query442
3u5c_C 254 Guanine nucleotide-binding protein subunit beta-L 99.97
3j20_F 236 30S ribosomal protein S5P; archaea, archaeal, KINK 99.97
2xzm_E 296 Ribosomal protein S5 containing protein; ribosome, 99.97
3iz6_E 274 40S ribosomal protein S2 (S5P); eukaryotic ribosom 99.95
3bbn_E 308 Ribosomal protein S5; small ribosomal subunit, spi 99.92
3r8n_E150 30S ribosomal protein S5; protein biosynthesis, RN 99.79
2vqe_E 162 30S ribosomal protein S5; tRNA-binding, rRNA-bindi 99.79
1pkp_A150 Ribosomal protein S5; 2.80A {Geobacillus stearothe 99.78
3i1m_E 167 30S ribosomal protein S5; ribosome structure, prot 99.78
>3u5c_C Guanine nucleotide-binding protein subunit beta-L protein (ASC1, RACK1); translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_E 3o30_B 3o2z_B 3u5g_C 3jyv_E* 1s1h_E Back     alignment and structure
Probab=99.97  E-value=1.3e-32  Score=260.39  Aligned_cols=99  Identities=20%  Similarity=0.293  Sum_probs=94.2

Q ss_pred             hhhhHHHHHHHhHhHhhhhhhhhhHHhhccCCccchHHHHHHHHHhhhhhhhcccccccCCcceeeeEeecceeeccCCe
Q 013474          327 ERDDILLERLNAIDKKLEEKLAELDHTFGKKGKLLEEEIRDLAEERNALTEKKRRPLYRKGFDVKLIDVNRTCKVTKGGQ  406 (442)
Q Consensus       327 Ekd~i~itKLg~ivKk~EGKI~sLdeiF~k~~pIlE~EIVD~LeerN~Ltekkr~p~~lp~LkEeVLdInRVQKmTKgGR  406 (442)
                      +++|+|+||||+|||++  ||+|||++|..++||+|+||||+|               +++|+++||+|+||||||++||
T Consensus        32 ~~~W~P~TklG~lVk~~--kiksleei~~~slpikE~eiiD~~---------------l~~Lke~Vl~I~rVqK~tkgGr   94 (254)
T 3u5c_C           32 EKGWVPVTKLGRLVKAG--KITTIEEIFLHSLPVKEFQIIDTL---------------LPGLQDEVMNIKPVQKQTRAGQ   94 (254)
T ss_dssp             --CCCCCSHHHHHHHTT--CCCCHHHHHHTTCCCCCHHHHHHH---------------CCCCBCCEEEEEEEEEEETTEE
T ss_pred             ccceeecccccchhhcC--ccccHHHHHHcCCCccchHHHHHH---------------HHhhhhhEEEEeeeEEEecCCc
Confidence            46799999999999966  999999999999999999999999               6999999999999999999999


Q ss_pred             eEEEEEEEEEecCCCceeeeeccCCcHHHHhhhhcC
Q 013474          407 VVKYTAMLACGNYHGVVGFAKAKGPAVPIALQKVTW  442 (442)
Q Consensus       407 RtRFrALVVVGNgNG~VGlGvGKAKEVatAIrKAIW  442 (442)
                      ++||+|||||||+||+||||+|||+||++||+||++
T Consensus        95 r~rF~AlVVVGD~nG~VGlG~gkakEV~~AIrkAi~  130 (254)
T 3u5c_C           95 RTRFKAVVVVGDSNGHVGLGIKTAKEVAGAIRAGII  130 (254)
T ss_dssp             EEEEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHH
T ss_pred             EEEEEEEEEecCCCCceeecccccchHHHHHHHHHH
Confidence            999999999999999999999999999999999973
>3j20_F 30S ribosomal protein S5P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2xzm_E Ribosomal protein S5 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_E Back     alignment and structure
>3iz6_E 40S ribosomal protein S2 (S5P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_e Back     alignment and structure
>3bbn_E Ribosomal protein S5; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>2vqe_E 30S ribosomal protein S5; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1fka_E 1gix_H* 1hnw_E* 1hnx_E* 1hnz_E* 1hr0_E 1ibk_E* 1ibl_E* 1ibm_E 1jgo_H* 1jgp_H* 1jgq_H* 1ml5_H* 1xmo_E* 1xmq_E* 1xnq_E* 1xnr_E* 1yl4_H 2b64_E* 2b9m_E* ... Back     alignment and structure
>1pkp_A Ribosomal protein S5; 2.80A {Geobacillus stearothermophilus} SCOP: d.14.1.1 d.50.1.2 PDB: 1eg0_B 1dv4_E* 1qd7_D Back     alignment and structure
>3i1m_E 30S ribosomal protein S5; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_E* 1vs5_E 3i1o_E 3i1q_E 3i1s_E 3i1z_E 3i21_E 3izv_I* 3izw_I* 3kc4_E 3or9_E 3ora_E 3sfs_E* 3uoq_E* 4gaq_E* 4gas_E* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 442
d2qale269 d.50.1.2 (E:9-77) Ribosomal S5 protein, N-terminal 2e-14
d1pkpa274 d.50.1.2 (A:4-77) Ribosomal S5 protein, N-terminal 2e-14
d2uube269 d.50.1.2 (E:5-73) Ribosomal S5 protein, N-terminal 3e-14
>d2qale2 d.50.1.2 (E:9-77) Ribosomal S5 protein, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 69 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Ribosomal S5 protein, N-terminal domain
domain: Ribosomal S5 protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 65.4 bits (160), Expect = 2e-14
 Identities = 23/52 (44%), Positives = 30/52 (57%)

Query: 388 FDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
              KLI VNR  K  KGG++  +TA+   G+ +G VGF   K   VP A+QK
Sbjct: 2   LQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQK 53
>d1pkpa2 d.50.1.2 (A:4-77) Ribosomal S5 protein, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 74 Back     information, alignment and structure
>d2uube2 d.50.1.2 (E:5-73) Ribosomal S5 protein, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 69 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query442
d2uube269 Ribosomal S5 protein, N-terminal domain {Thermus t 99.82
d1pkpa274 Ribosomal S5 protein, N-terminal domain {Bacillus 99.81
d2qale269 Ribosomal S5 protein, N-terminal domain {Escherich 99.8
>d2uube2 d.50.1.2 (E:5-73) Ribosomal S5 protein, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Ribosomal S5 protein, N-terminal domain
domain: Ribosomal S5 protein, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.82  E-value=3.8e-21  Score=150.29  Aligned_cols=56  Identities=34%  Similarity=0.692  Sum_probs=54.2

Q ss_pred             CcceeeeEeecceeeccCCeeEEEEEEEEEecCCCceeeeeccCCcHHHHhhhhcC
Q 013474          387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQKVTW  442 (442)
Q Consensus       387 ~LkEeVLdInRVQKmTKgGRRtRFrALVVVGNgNG~VGlGvGKAKEVatAIrKAIW  442 (442)
                      +|+++||+|+||||||++||+++|+|+|||||+||+||||+|||+||+.||+||++
T Consensus         1 d~~e~vv~i~rV~k~tk~Gr~~~f~alvvvGn~~G~vG~G~gKa~ev~~Ai~KA~~   56 (69)
T d2uube2           1 DFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGY   56 (69)
T ss_dssp             CCEEEEEEEEEEEEEETTEEEEEEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHH
T ss_pred             CceeEEEEEEeeeEEEcCCceeEEEEEEEEECCCCcEeeccccchHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999973
>d1pkpa2 d.50.1.2 (A:4-77) Ribosomal S5 protein, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2qale2 d.50.1.2 (E:9-77) Ribosomal S5 protein, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure