Citrus Sinensis ID: 013500

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440--
Protein Sequence
MSSYLSGGGRTYALDLEIIKSPSHSTGTSHTSSSPLSTLSEASNSPLAISTRKARTPRKRPNQTYNEAAALLSTACPNIFSTKHLTNLNKFTTKPPDHRRHHQQQEPNQQFFDESSELLLPFRVIDDSGFLLHQPILDKPRFPLEPKVTKFCENKLSCQNSGEVDFQGANHNPMEVQISSEFDEDFDAESIILDEEFEEGIDSIMGNLSVKKDAIESDDGHSQVHNSNCWYGNPMGIGFGGKLELGFGMRSGMKALRQVDEGNWWNFPIDVLQISPKFNNSSGTGNSNRKGSSEKRKKKVGKEKPVAESKVSELPAKEESPIPKANSGELLLKLQYDDVLNAWSGKGSPFLDESLAPDGQGNDVSARLAQIDLFSDGGLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRPNSNAQDERGKKKVVMLSDL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccHHHHHHcHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEccccHHHEccccccccccccccccccccccccccccEEcccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccHccccHHHcccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccHHcccEEEEcccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccHHHccccccHEEEEccccccccccccccccccEEEEEcHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccHHHHccccHEEEcccc
Coil and Loop (DISEMBL)
mssylsgggrtyaLDLEiikspshstgtshtsssplstlseasnsplaistrkartprkrpnqtYNEAAALLStacpnifstkhltnlnkfttkppdhrrhhqqqepnqqffdesselllpfrviddsgfllhqpildkprfplepkvtkfcenklscqnsgevdfqganhnpmevqissefdedfdaesiildEEFEEGIDSIMgnlsvkkdaiesddghsqvhnsncwygnpmgigfggklelgfgmrSGMKALRQVdegnwwnfpidvlqispkfnnssgtgnsnrkgssekrkkkvgkekpvaeskvselpakeespipkansgellLKLQYDDVlnawsgkgspfldeslapdgqgndvSARLAQIDlfsdgglreaSVLRYKEKRRTRLFSKKIRYQVRKVnadrrprmkgrfvrrpnsnaqdergkkKVVMLSDL
Flexible Loop (DISEMBL)
mssylsggGRTYALDLEIIKSPshstgtshtsssplstlseasnsplaistrkartprkrpnQTYNEAAALLSTACPNIFSTKHLTNLNKFTTKPPDHRRHHQQQEPNQQFFDESSELLLPFRVIDDSGFLLHQPILDKPRFPLEPKVTKFCENKLSCQNSGEVDFQGANHNPMEVQISSEFDEDFDAESIILDEEFEEGIDSIMGNLSVKKDAIESDDGHSQVHNSNCWYGNPMGIGFGGKLELGFGMRSGMKALRQVDEGNWWNFPIDVLQIspkfnnssgtgnsnrkgssekrkkkvgkekpvaeskvselpakeespipkansgeLLLKLQYDDVLNAWSGKGSPFLDESLAPDGQGNDVSARLAQIdlfsdgglreasvlrykekrrtrlfskkiryqvrkvnadrrprmkgrfvrrpnsnaqdergkkkvvmlsdl
Low Complexity Region (SEG)
MSSYLSGGGRTYALDLEIIKspshstgtshtsssplstlsEASNSPLAISTRKARTPRKRPNQTYNEAAALLSTACPNIFSTKHLTNLNKFTTKPPDHRRHHQQQEPNQQFFDESSELLLPFRVIDDSGFLLHQPILDKPRFPLEPKVTKFCENKLSCQNSGEVDFQGANHNPMEVQISSEFDEDFDAESIILDEEFEEGIDSIMGNLSVKKDAIESDDGHSQVHNSNCWYGNPMGIGFGGKLELGFGMRSGMKALRQVDEGNWWNFPIDVLQISPKFNNSSGTGNSNrkgssekrkkkvgkekPVAESKVSELPAKEESPIPKANSGELLLKLQYDDVLNAWSGKGSPFLDESLAPDGQGNDVSARLAQIDLFSDGGLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRPNSNAQDERGKKKVVMLSDL
Disordered region (IsUnstruct)
************AL******************************************************AALLSTACPNIFSTKHLTNL****************************ELLLPFRVIDDSGFLLHQPILDKPRFPLEPKVTKFCENKLSC*****************************AESIILDEEFEEGIDSIMGNL***************VHNSNCWYGNPMGIGFGGKLELGFGMRSGMKALRQVDEGNWWNFPIDVLQIS******************************************************LLLKLQYDDVLNAWSGK********************RLAQIDLFSDGGLREASVLRYKEKRRTRLFSKKIRYQV**************************************
Disordered Region (DISOPRED)
******GGGRTYALDL*****************************************************ALLSTACP************************************ESSELLLPFRVIDDSGFLLHQPILDK***************************************SSEFDEDFDAESIILDEEFEEGIDSI******************************************************VDEGNWWNFPIDVLQISPK****************************************************************************************************************K*R*RLFSKKIRYQVRKVNADRRPRMKGRF***********************
Disordered Region (DISEMBL)
********GRTYALDLEIIKSP****************************************QTYNEAAALLSTACPNIFSTKHLTNLNKFTT**************NQQFFDESSELLLPFRVIDDSGFLLHQPILDKPRFPLEPKVTKFCENKLSCQNSGEVDFQGANHNPMEVQISSEFDEDFDAESIILDEEFEEGIDSIMGNLSVKKDAI********VHNSNCWYGNPMGIGFGGKLELGFGMRSGMKALRQVDEGNWWNFPIDVLQISPKFNN*****************************************IPKANSGELLLKLQYDDVLNAWSGKGSPFLDESLAPDGQGNDVSARLAQIDLFSDGGLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFV**********************
Disordered Region (DISPRO)
**********TYALD*EIIK*************************************RKRPNQTYNEAAALLSTACPNIFSTKH****************************DESSELLLPFRVIDDSGFLLHQP****************************************VQISSEFDEDFDAESIILDEEFEEGIDSIMGNLSVKKDAIESDDGHSQVHNSNCWYGNPMGIGFGGKLELGFGMRSGMKALRQVDEGNWWNFPIDVLQISPKFNN*************************VAESKVS*************NSGELLLKLQYDDVLNAWSGKGSPFLDE*LA***********L**********LREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRPN******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSYLSGGGRTYALDLEIIKSPSHSTGTSHTSSSPLSTLSEASNSPLAISTRKARTPRKRPNQTYNEAAALLSTACPNIFSTKHLTNLNKFTTKPPDHRRHHQQQEPNQQFFDESSELLLPFRVIDDSGFLLHQPILDKPRFPLEPKVTKFCENKLSCQNSGEVDFQGANHNPMEVQISSEFDEDFDAESIILDEEFEEGIDSIMGNLSVKKDAIESDDGHSQVHNSNCWYGNPMGIGFGGKLELGFGMRSGMKALRQVDEGNWWNFPIDVLQISPKFNNSSGTGNSNRKGSSEKRKKKVGKEKPVAESKVSELPAKEESPIPKANSGELLLKLQYDDVLNAWSGKGSPFLDESLAPDGQGNDVSARLAQIDLFSDGGLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRPNSNAQDERGKKKVVMLSDL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	442	2.2.26 [Sep-21-2011]
Q9LU68	435	Protein CHLOROPLAST IMPOR	no	no	0.868	0.882	0.415	2e-64
Q8RWD0	417	Zinc finger protein CONST	no	no	0.203	0.215	0.473	3e-18
Q8LG76	406	Zinc finger protein CONST	no	no	0.210	0.229	0.459	3e-18
Q9C9A9	392	Zinc finger protein CONST	no	no	0.208	0.234	0.473	9e-17
Q9M9B3	319	Zinc finger protein CONST	no	no	0.187	0.260	0.5	8e-15
Q9FDX8	395	Zinc finger protein HD1 O	no	no	0.158	0.177	0.471	3e-09
Q9FHH8	355	Zinc finger protein CONST	no	no	0.176	0.219	0.418	4e-09
Q9SK53	294	Zinc finger protein CONST	no	no	0.113	0.170	0.58	7e-09
Q940T9	362	Zinc finger protein CONST	no	no	0.115	0.140	0.529	7e-09
Q96502	347	Zinc finger protein CONST	no	no	0.097	0.123	0.627	2e-08

>sp|Q9LU68|CIA2_ARATH Protein CHLOROPLAST IMPORT APPARATUS 2 OS=Arabidopsis thaliana GN=CIA2 PE=2 SV=1

 Score =  246 bits (629), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 194/467 (41%), Positives = 252/467 (53%), Gaps = 83/467 (17%)

Query: 1   MSSYLS---GGGRTYALDLEIIKSPSHSTGTSHTSSSPLSTLSEASNS-PLAISTRKART 56
           MS+ LS   GG   Y+ +LE +KSP  S+ T+ T ++  S+    S++ PLAISTRK RT
Sbjct: 1   MSACLSSGGGGAAAYSFELEKVKSPPPSSSTTTTRATSPSSTISESSNSPLAISTRKPRT 60

Query: 57  PRKRPNQTYNEAAALLSTACPNIFSTKHLTNLNKFTTKPPDHRRHHQQQEPNQQFF---- 112
            RKRPNQTYNEAA LLSTA PNIFS+    NL+          +       N  F+    
Sbjct: 61  QRKRPNQTYNEAATLLSTAYPNIFSS----NLSS---------KQKTHSSSNSHFYGPLL 107

Query: 113 ---DESSELLLPFRVIDDSGFLLHQPILDKPRFPLEPKVTKFCENKLSCQNSGEVDFQGA 169
              D++S+LLLP+  I++  FL H  I  K  F        F + K    NSG   + G 
Sbjct: 108 SDNDDASDLLLPYESIEEPDFLFHPTIQTKTEF--------FSDQKEV--NSGGDCYGG- 156

Query: 170 NHNPMEVQISSEFDEDFDAESIILDEEFEEGIDSIMGNL----------SVKKDAIESDD 219
                E++   +F ++FDAESI LDE+ EEGIDSIMG +            +   + +  
Sbjct: 157 -----EIE-KFDFSDEFDAESI-LDEDIEEGIDSIMGTVVESNSNSGIYESRVPGMINRG 209

Query: 220 GHS---------QVHNSNCWYGNPMGIGFGGKLELGFGMRSGMKALRQVDEGNWWNF-PI 269
           G S         Q+   N W  +  G  F     LG G+RS   ALR+ D+   W    +
Sbjct: 210 GRSSSNRIGKLEQMMMINSWNRSSNGFNF----PLGLGLRS---ALRENDDTKLWKIHTV 262

Query: 270 DVLQISPKFNN--SSGTGNSNRKGSSEKRKKKVGKEK----------PVAESKVSELPAK 317
           D  QISP+     +    ++  +  S+ +K  +  EK           V  + ++E  + 
Sbjct: 263 DFEQISPRIQTVKTETAISTVDEEKSDGKKVVISGEKSNKKKKKKKMTVTTTLITESKSL 322

Query: 318 EESPIPKANSGELLLKLQYDDVLNAWSGKGSPFLDESLAPDGQGNDVSARLAQIDLFSDG 377
           E++          LLKL YD VL AWS K SPF DE      +  DV+ARLAQIDLF D 
Sbjct: 323 EDTEETSLKRTGPLLKLDYDGVLEAWSDKTSPFPDE--IQGSEAVDVNARLAQIDLFGDS 380

Query: 378 GLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRPN 424
           G+REASVLRYKEKRRTRLFSKKIRYQVRK+NAD+RPRMKGRFVRRPN
Sbjct: 381 GMREASVLRYKEKRRTRLFSKKIRYQVRKLNADQRPRMKGRFVRRPN 427

Responsible for specific up-regulation of the translocon genes TOC33 and TOC75 in leaves. Involved in the general chloroplast protein import pathway regulation, including protein import and protein translation efficiencies.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWD0|COL16_ARATH Zinc finger protein CONSTANS-LIKE 16 OS=Arabidopsis thaliana GN=COL16 PE=2 SV=2

 Score = 93.6 bits (231), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/114 (47%), Positives = 69/114 (60%), Gaps = 24/114 (21%)

Query: 330 LLLKLQYDDVLNAWSGKGSPFLDESLAPDGQGNDVSARLAQIDL---------------- 373
           L+L+L YD V++ W G+G P+   S  P  +  D+S   A   +                
Sbjct: 293 LMLRLNYDSVISTWGGQGPPW--SSGEPPERDMDISGWPAFSMVENGGESTHQKQYVGGC 350

Query: 374 -----FSDGGLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRR 422
                F DGG REA V RY+EKRRTRLFSKKIRY+VRK+NA++RPRMKGRFV+R
Sbjct: 351 LPSSGFGDGG-REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 403

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LG76|COL6_ARATH Zinc finger protein CONSTANS-LIKE 6 OS=Arabidopsis thaliana GN=COL6 PE=2 SV=2

 Score = 93.2 bits (230), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/111 (45%), Positives = 66/111 (59%), Gaps = 18/111 (16%)

Query: 330 LLLKLQYDDVLNAWSGKGSPF---------LDESLAPDGQGNDVSARLAQIDLFSDGGL- 379
           L+L+L Y+ V++ W G+G P+         LD    P     +  A     + F   GL 
Sbjct: 289 LMLRLDYESVISTWGGQGIPWTARVPSEIDLDMVCFPTHTMGESGAEAHHHNHFRGLGLH 348

Query: 380 --------REASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRR 422
                   REA V RY+EKRRTRLFSKKIRY+VRK+NA++RPRMKGRFV+R
Sbjct: 349 LGDAGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 399

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9A9|COL7_ARATH Zinc finger protein CONSTANS-LIKE 7 OS=Arabidopsis thaliana GN=COL7 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 53/112 (47%), Positives = 68/112 (60%), Gaps = 20/112 (17%)

Query: 330 LLLKLQYDDVLNAWSGKGSPFLDESLAPDGQ--GNDVSARLA---QIDLFSDG------- 377
           L L+L Y  V++AW   GSP+    + P+    GN     +    +  + SDG       
Sbjct: 277 LFLRLDYGAVISAWDNHGSPW-KTGIKPECMLGGNTCLPHVVGGYEKLMSSDGSVTRQQG 335

Query: 378 -------GLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRR 422
                  G REA VLRYKEKRRTRLFSKKIRY+VRK+NA++RPR+KGRFV+R
Sbjct: 336 RDGGGSDGEREARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRPRIKGRFVKR 387

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9B3|COL8_ARATH Zinc finger protein CONSTANS-LIKE 8 OS=Arabidopsis thaliana GN=COL8 PE=2 SV=2

 Score = 82.0 bits (201), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 59/92 (64%), Gaps = 9/92 (9%)

Query: 333 KLQYDDVLNAWSGKGSPFLDESLAPDGQGNDVSARLAQ--IDLFSDGGLREASVLRYKEK 390
           +L Y++V+ AW  + SP        D + N  S +L    I+       REA V RY++K
Sbjct: 229 RLNYENVIAAWDKQESP-------RDVKNNTSSFQLVPPGIEEKRVRSEREARVWRYRDK 281

Query: 391 RRTRLFSKKIRYQVRKVNADRRPRMKGRFVRR 422
           R+ RLF KKIRY+VRKVNAD+RPRMKGRFVRR
Sbjct: 282 RKNRLFEKKIRYEVRKVNADKRPRMKGRFVRR 313

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FDX8|HD1_ORYSJ Zinc finger protein HD1 OS=Oryza sativa subsp. japonica GN=HD1 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 42/70 (60%)

Query: 355 LAPDGQGNDVSARLAQIDLFSDGGLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPR 414
           L P G  N  S    Q+ L      REA VLRY+EK++ R F K IRY+ RK  A+ RPR
Sbjct: 301 LTPAGAINLFSGPSLQMSLHFSSMDREARVLRYREKKKARKFEKTIRYETRKAYAEARPR 360

Query: 415 MKGRFVRRPN 424
           +KGRF +R +
Sbjct: 361 IKGRFAKRSD 370

Probable transcription factor involved in the regulation of flower development. Required for the promotion of flowering under short day (SD) conditions and the suppression of flowering under long day (LD) conditions. Regulates positively the floral activator HEADING DATE 3a (HD3A) under SD and negatively under LD conditions.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FHH8|COL5_ARATH Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2

 Score = 63.2 bits (152), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 8/86 (9%)

Query: 351 LDESLAPDGQGNDVSARLAQIDLFSDGGL-------REASVLRYKEKRRTRLFSKKIRYQ 403
           ++  + PDG  N+ S   + I   + GG        REA VLRY+EKR+ R F K IRY 
Sbjct: 250 IEYGVVPDGNTNN-SVNRSTITSSTTGGDHQASSMDREARVLRYREKRKNRKFEKTIRYA 308

Query: 404 VRKVNADRRPRMKGRFVRRPNSNAQD 429
            RK  A+ RPR+KGRF +R  +   D
Sbjct: 309 SRKAYAESRPRIKGRFAKRTETENDD 334

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK53|COL3_ARATH Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1

 Score = 62.4 bits (150), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 35/50 (70%)

Query: 380 REASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRPNSNAQD 429
           REA VLRY+EKR+ R F K IRY  RK  A+ RPR+KGRF +R +S   D
Sbjct: 229 REARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDSREND 278

Arabidopsis thaliana (taxid: 3702)

>sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2

 Score = 62.4 bits (150), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 37/51 (72%)

Query: 380 REASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRPNSNAQDE 430
           REA V+RY+EKR+ R F K IRY  RK  A+ RPR+KGRF +R ++N  ++
Sbjct: 295 REARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDTNESND 345

Arabidopsis thaliana (taxid: 3702)

>sp|Q96502|COL2_ARATH Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 33/43 (76%)

Query: 380 REASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRR 422
           REA VLRY+EK++TR F K IRY  RK  A+ RPR+KGRF +R
Sbjct: 278 REARVLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKR 320

Putative transcription factor. Does not affect flowering time.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	442
224087284	448	predicted protein [Populus trichocarpa]	0.936	0.924	0.567	1e-109
147784441	392	hypothetical protein VITISV_015092 [Viti	0.877	0.989	0.588	1e-106
225470656	392	PREDICTED: protein CHLOROPLAST IMPORT AP	0.877	0.989	0.590	1e-105
449463579	430	PREDICTED: protein CHLOROPLAST IMPORT AP	0.893	0.918	0.554	1e-100
296090276	392	unnamed protein product [Vitis vinifera]	0.821	0.926	0.570	2e-97
255554380	397	CIL, putative [Ricinus communis] gi|2235	0.864	0.962	0.587	7e-90
356549250	399	PREDICTED: protein CHLOROPLAST IMPORT AP	0.859	0.952	0.534	4e-85
356562078	398	PREDICTED: protein CHLOROPLAST IMPORT AP	0.873	0.969	0.538	2e-82
356549252	393	PREDICTED: protein CHLOROPLAST IMPORT AP	0.839	0.944	0.526	2e-80
449532521	380	PREDICTED: protein CHLOROPLAST IMPORT AP	0.787	0.915	0.514	7e-76

>gi|224087284|ref|XP_002308112.1| predicted protein [Populus trichocarpa] gi|222854088|gb|EEE91635.1| predicted protein [Populus trichocarpa]

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 265/467 (56%), Positives = 317/467 (67%), Gaps = 53/467 (11%)

Query: 2   SSYLSGGGRTYALDLEIIKSPSHSTGTSHTSSSPLSTLSEASNSPLAISTRKARTPRKRP 61
           S  +SGGGRTY  DLEI+KS S S+  +  +SSP ST+SE+SNSPLAISTRK+RTPRKRP
Sbjct: 3   SPCISGGGRTYGFDLEIVKSSSTSSTRTSHTSSPSSTISESSNSPLAISTRKSRTPRKRP 62

Query: 62  NQTYNEAAALLSTACPNIFSTKHLTNLNKFTTKPPDHRRHHQQQEPNQQFFDESSELLLP 121
           NQTYNEAAALLSTA PNIFSTKHLT  +KF TKP D          N    D+SS+LLLP
Sbjct: 63  NQTYNEAAALLSTAYPNIFSTKHLTKSSKF-TKPQD----------NSLLLDQSSDLLLP 111

Query: 122 FRVIDDSGFLLHQPILDKPRFPLEPKVTKFCENKLSCQNSGEVDFQGANHNPMEVQISSE 181
           FRV D+SGFL+HQPI  KP +  E +   F + K SCQ+SGEVDF G +     V++   
Sbjct: 112 FRVFDNSGFLIHQPIQGKPSYGNESRFANFTD-KSSCQSSGEVDFHGNS-----VELCDG 165

Query: 182 FDEDFDAESIILDEEFEEGIDSIMGNLSVKKDAI-ESDDGHSQVHNS--NCWYGNPMGIG 238
            DEDFDAES ILDEEFEEGIDSIMG+ S+  + + E  +G S       N WYG+ MG  
Sbjct: 166 LDEDFDAES-ILDEEFEEGIDSIMGHSSIGNEMVDEVPNGISSSFGGQMNSWYGSSMGYN 224

Query: 239 FGGKLELGFG--MRSGMKALRQVDEGNWWNFPI-DVLQISPKF----------------- 278
           FGGK + G G  MR G++ALR VDEGNWW+FPI D+LQISP+                  
Sbjct: 225 FGGKSQYGHGIAMRRGVRALRHVDEGNWWDFPIVDMLQISPRLTTTVAATANANSNNGPE 284

Query: 279 -----NNSSGTGNSNRKGSSEKRKKKVGKEKPVAESKVSEL----PAKEESPIPKANSGE 329
                          +  SS ++KKK  ++  V E K  EL    P KE S IP+++ G 
Sbjct: 285 CNSIPKPKPKPKLKLKPNSSSEKKKKKVEKPAVMEEKNVELKDENPVKENS-IPQSSQG- 342

Query: 330 LLLKLQYDDVLNAWSGKGSPFLDESLAPDGQGNDVSARLAQIDLFSDGGLREASVLRYKE 389
           L+LKL YD VL+ WS +GSPF DES+    +GNDVSARLAQIDLFS+ G+REASVLRYKE
Sbjct: 343 LILKLNYDHVLSEWSDRGSPFSDESMGC-AEGNDVSARLAQIDLFSENGMREASVLRYKE 401

Query: 390 KRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRPNSNAQDERGKKKV 436
           KRRTRLFSKKIRYQVRKVNAD+RPRMKGRFVRRPN  + ++  KKK+
Sbjct: 402 KRRTRLFSKKIRYQVRKVNADQRPRMKGRFVRRPNPRSDEQEKKKKL 448

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147784441|emb|CAN72725.1| hypothetical protein VITISV_015092 [Vitis vinifera]

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 256/435 (58%), Positives = 302/435 (69%), Gaps = 47/435 (10%)

Query: 1   MSSYLSGGGRTYALDLEIIKSPSHSTGTSHTSSSPLSTLSEASNSPLAISTRKARTPRKR 60
           MSS LSG GRTY  +LEI+K PS ++  +  SSSP ST+SE+SNSP+AISTRK RTPRKR
Sbjct: 1   MSSCLSGAGRTYGFELEIVKXPSSTSPRTSHSSSPSSTISESSNSPIAISTRKXRTPRKR 60

Query: 61  PNQTYNEAAALLSTACPNIFSTKHLTNLNKFTTKPPDHRRHHQQQEPNQQFFDESSELLL 120
           PNQTYNEAAALLSTA PNIFSTK+L N  KFT               +  F ++SSELL 
Sbjct: 61  PNQTYNEAAALLSTAYPNIFSTKNLKNPCKFTKS-------------HDSFLEDSSELLF 107

Query: 121 PFRVIDDSGFLLHQPILDKPRFPLEPKVTKFCENKLSCQNSGEVDFQGANHNPMEVQISS 180
           PFR  D SGFLLHQP+ +KP F + PKV   CE    CQ+S E +F G +      ++  
Sbjct: 108 PFRAFDASGFLLHQPVQEKPSFQMLPKVVNCCEK--PCQSSVESEFPGKSP-----ELCD 160

Query: 181 EFDEDFDAESIILDEEFEEGIDSIMGNLSVKKDAIESDDGHSQVHNSNCWYGN--PMGIG 238
            F+EDFDAES ILDEE E GIDSIMGNLSV  +   SD+  + V   N +YGN  PMG+G
Sbjct: 161 GFEEDFDAES-ILDEEIEGGIDSIMGNLSVDNEM--SDEATNPVC-FNSYYGNGIPMGLG 216

Query: 239 FGGKLELGFGMRSGMKALRQVDEGNWWNFP-IDVLQISPKFNNSSGTGNSNRKGSSEKRK 297
           FGGK E GFGMR G++ALR VDEG+WW FP +D+L+ISPKFN  S      +   +++ +
Sbjct: 217 FGGKFEFGFGMRRGVRALRHVDEGDWWRFPTVDILEISPKFNKVSAEKKKKKVEKAQELR 276

Query: 298 KKVGKEKPVAESKVSELPAKEESPIPKANSGELLLKLQYDDVLNAWSGKGSPFLDESLAP 357
                E P   S            IPK+NS  LLLKL YDDVL+AWS +GSPF  E+  P
Sbjct: 277 ---SWESPKGNS------------IPKSNSS-LLLKLNYDDVLSAWSDRGSPFSRETEFP 320

Query: 358 DGQGNDVSARLAQIDLFSD-GGLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMK 416
              GND +ARLAQIDLFS+ GG+REASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMK
Sbjct: 321 ---GNDTAARLAQIDLFSECGGVREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMK 377

Query: 417 GRFVRRPNSNAQDER 431
           GRFVRRPNSN+  +R
Sbjct: 378 GRFVRRPNSNSNGQR 392

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470656|ref|XP_002268213.1| PREDICTED: protein CHLOROPLAST IMPORT APPARATUS 2-like [Vitis vinifera]

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 257/435 (59%), Positives = 303/435 (69%), Gaps = 47/435 (10%)

Query: 1   MSSYLSGGGRTYALDLEIIKSPSHSTGTSHTSSSPLSTLSEASNSPLAISTRKARTPRKR 60
           MSS LSG GRTY  +LEI+KSPS ++  +  SSSP ST+SE+SNSP+AISTRK RTPRKR
Sbjct: 1   MSSCLSGAGRTYGFELEIVKSPSSTSPRTSHSSSPSSTISESSNSPIAISTRKPRTPRKR 60

Query: 61  PNQTYNEAAALLSTACPNIFSTKHLTNLNKFTTKPPDHRRHHQQQEPNQQFFDESSELLL 120
           PNQTYNEAAALLSTA PNIFSTK+L N  KFT               +  F ++SSELL 
Sbjct: 61  PNQTYNEAAALLSTAYPNIFSTKNLKNPCKFTKS-------------HDSFLEDSSELLF 107

Query: 121 PFRVIDDSGFLLHQPILDKPRFPLEPKVTKFCENKLSCQNSGEVDFQGANHNPMEVQISS 180
           PFR  D SGFLLHQP+ +KP F + PKV   CE    CQ+S E +F G +      ++  
Sbjct: 108 PFRAFDASGFLLHQPVQEKPSFQMLPKVVNCCEK--PCQSSVESEFPGKSP-----ELCD 160

Query: 181 EFDEDFDAESIILDEEFEEGIDSIMGNLSVKKDAIESDDGHSQVHNSNCWYGN--PMGIG 238
            F+EDFDAES ILDEE E GIDSIMGNLSV  +   SD+  + V   N +YGN  PMG+G
Sbjct: 161 GFEEDFDAES-ILDEEIEGGIDSIMGNLSVDNEM--SDEATNPVC-FNSYYGNGIPMGLG 216

Query: 239 FGGKLELGFGMRSGMKALRQVDEGNWWNFP-IDVLQISPKFNNSSGTGNSNRKGSSEKRK 297
           FGGK E GFGMR G++ALR VDEG+WW FP +D+L+ISPKFN  S      +   +++ +
Sbjct: 217 FGGKFEFGFGMRRGVRALRHVDEGDWWRFPTVDILEISPKFNKVSAEKKKKKVEKAQELR 276

Query: 298 KKVGKEKPVAESKVSELPAKEESPIPKANSGELLLKLQYDDVLNAWSGKGSPFLDESLAP 357
                E P   S            IPK+NS  LLLKL YDDVL+AWS +GSPF  E+  P
Sbjct: 277 ---SWESPKGNS------------IPKSNSS-LLLKLNYDDVLSAWSDRGSPFSRETEFP 320

Query: 358 DGQGNDVSARLAQIDLFSD-GGLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMK 416
              GND +ARLAQIDLFS+ GG+REASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMK
Sbjct: 321 ---GNDTAARLAQIDLFSECGGVREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMK 377

Query: 417 GRFVRRPNSNAQDER 431
           GRFVRRPNSN+  +R
Sbjct: 378 GRFVRRPNSNSNGQR 392

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463579|ref|XP_004149511.1| PREDICTED: protein CHLOROPLAST IMPORT APPARATUS 2-like [Cucumis sativus]

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 244/440 (55%), Positives = 291/440 (66%), Gaps = 45/440 (10%)

Query: 2   SSYLSGGGRTYALDLEIIKSPSHSTGTSHTSSSPLSTLSEASN--SPLAISTRKARTPRK 59
           S  +SGGGR Y  DLEI+KSPS S   +  +SSP STLSE+SN  + LAISTRK RTPRK
Sbjct: 3   SPCISGGGRAYNFDLEILKSPSSSWTRTSQTSSPSSTLSESSNNTTQLAISTRKLRTPRK 62

Query: 60  RPNQTYNEAAALLSTACPNIFSTKHLTNLNKFTTKPPDHRRHHQQQEPNQQFFDESSELL 119
           RPNQTYNEA  LLSTA PN+FSTKHLTN  KFT          +  + +   F ES+ELL
Sbjct: 63  RPNQTYNEATVLLSTAYPNVFSTKHLTNPRKFT----------KSHDDSSSLFCESAELL 112

Query: 120 LPFRVIDDSGFLLHQPIL-DKPRFPLEPKVTKFCENKLSCQNSGEVDFQGANHNPMEVQI 178
           LPFRVID SGFLLHQP+L +KP   +  K+T   EN+  C + GE+DFQ    N ME+  
Sbjct: 113 LPFRVIDSSGFLLHQPLLEEKPNSQIHSKLTNLWENR-PCSSPGEIDFQ---PNSMEI-- 166

Query: 179 SSEFDEDFDAESIILDEEFEEGIDSIMGNLSV----KKDAIESDDGHSQVHNSNCWYGNP 234
             E  EDFDAES ILDEE EEGIDSIMGNLSV    K ++ +    ++  H  N W  NP
Sbjct: 167 --EEIEDFDAES-ILDEEIEEGIDSIMGNLSVDNLEKGNSTQDSCVNANNHPRN-WNWNP 222

Query: 235 MGIGFGGKLELGFGMRSGMK--ALRQVDEGNWWNFP-IDVLQISPKFN------NSSGTG 285
           +G+GF  K E GFG R G++  A+R VD GNWW FP +DV++ISPK N        + T 
Sbjct: 223 IGLGFNQKFESGFGFRKGIERTAIRGVDNGNWWRFPTVDVIEISPKLNPKPPAPAPTPTP 282

Query: 286 NSNRKGSSEKRKKKVGKEKPVAESKVSELPA---KEESPIPKANSGELLLKLQYDDVLNA 342
                  S K+KKK  ++  V ESK + +P    K E PIPK     LLLKL Y+ V +A
Sbjct: 283 TPTPAAVSTKKKKKKVEKLTVIESKKAAIPLQKEKSEKPIPKLKPTGLLLKLNYEAVADA 342

Query: 343 WSGKGS----PFLDESLAPDGQGNDVSARLAQIDLFSDGG--LREASVLRYKEKRRTRLF 396
           WS +GS    PF DE  + D  G+DV+AR+A IDLF++GG  LREASVLRYKEKRRTRLF
Sbjct: 343 WSSRGSPFSDPFSDEIPSSDTAGSDVNARVANIDLFTEGGGLLREASVLRYKEKRRTRLF 402

Query: 397 SKKIRYQVRKVNADRRPRMK 416
           SKKIRYQVRKVNAD RPRMK
Sbjct: 403 SKKIRYQVRKVNADGRPRMK 422

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090276|emb|CBI40095.3| unnamed protein product [Vitis vinifera]

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 248/435 (57%), Positives = 291/435 (66%), Gaps = 72/435 (16%)

Query: 1   MSSYLSGGGRTYALDLEIIKSPSHSTGTSHTSSSPLSTLSEASNSPLAISTRKARTPRKR 60
           MSS LSG GRTY  +LEI+KSPS ++  +  SSSP ST+SE+SNSP+AISTRK RTPRKR
Sbjct: 26  MSSCLSGAGRTYGFELEIVKSPSSTSPRTSHSSSPSSTISESSNSPIAISTRKPRTPRKR 85

Query: 61  PNQTYNEAAALLSTACPNIFSTKHLTNLNKFTTKPPDHRRHHQQQEPNQQFFDESSELLL 120
           PNQTYNEAAALLSTA PNIFSTK+L N  KFT             + +  F ++SSELL 
Sbjct: 86  PNQTYNEAAALLSTAYPNIFSTKNLKNPCKFT-------------KSHDSFLEDSSELLF 132

Query: 121 PFRVIDDSGFLLHQPILDKPRFPLEPKVTKFCENKLSCQNSGEVDFQGANHNPMEVQISS 180
           PFR  D SGFLLHQP+ +KPR     K  + C+                           
Sbjct: 133 PFRAFDASGFLLHQPVQEKPR-----KSPELCDG-------------------------- 161

Query: 181 EFDEDFDAESIILDEEFEEGIDSIMGNLSVKKDAIESDDGHSQVHNSNCWYGN--PMGIG 238
            F+EDFDAES ILDEE E GIDSIMGNLSV  +   SD+  + V   N +YGN  PMG+G
Sbjct: 162 -FEEDFDAES-ILDEEIEGGIDSIMGNLSVDNEM--SDEATNPVC-FNSYYGNGIPMGLG 216

Query: 239 FGGKLELGFGMRSGMKALRQVDEGNWWNFP-IDVLQISPKFNNSSGTGNSNRKGSSEKRK 297
           FGGK E GFGMR G++ALR VDEG+WW FP +D+L+ISPKFN  S      +   +++ +
Sbjct: 217 FGGKFEFGFGMRRGVRALRHVDEGDWWRFPTVDILEISPKFNKVSAEKKKKKVEKAQELR 276

Query: 298 KKVGKEKPVAESKVSELPAKEESPIPKANSGELLLKLQYDDVLNAWSGKGSPFLDESLAP 357
                E P   S            IPK+NS  LLLKL YDDVL+AWS +GSPF  E+  P
Sbjct: 277 ---SWESPKGNS------------IPKSNSS-LLLKLNYDDVLSAWSDRGSPFSRETEFP 320

Query: 358 DGQGNDVSARLAQIDLFSD-GGLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMK 416
              GND +ARLAQIDLFS+ GG+REASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMK
Sbjct: 321 ---GNDTAARLAQIDLFSECGGVREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMK 377

Query: 417 GRFVRRPNSNAQDER 431
           GRFVRRPNSN+  +R
Sbjct: 378 GRFVRRPNSNSNGQR 392

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554380|ref|XP_002518229.1| CIL, putative [Ricinus communis] gi|223542576|gb|EEF44115.1| CIL, putative [Ricinus communis]

 Score =  337 bits (864), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 249/424 (58%), Positives = 291/424 (68%), Gaps = 42/424 (9%)

Query: 2   SSYLSGGGRTYALDLEIIKSPSHSTGTSHTSSSPLSTLSEASNSPLAISTRKARTPRKRP 61
           S  LSGGGR Y  DLEI+KSPS ST TSHTSS   STLSE+SNSPLAISTRK RT RKRP
Sbjct: 3   SPCLSGGGRAYGFDLEIVKSPSTSTRTSHTSSP-SSTLSESSNSPLAISTRKPRTHRKRP 61

Query: 62  NQTYNEAAALLSTACPNIFSTKHLTNLNKFTTKPPDHRRHHQQQEPNQQFFDESSELLLP 121
           NQ YNEAAALLSTA PNIFST   TN  KF TKP        Q          SSELL P
Sbjct: 62  NQIYNEAAALLSTAYPNIFST---TNPRKF-TKP-------HQDTLLLDESLSSSELLWP 110

Query: 122 FRVID-DSGFLLHQPI-LDKPRFPLEPKVTKF---CEN-KLSCQNSGEVDFQGANHNPME 175
           FRV D DS FLLHQ +  +KP F +EPK++     C+    SCQ+    D QG   N ME
Sbjct: 111 FRVFDEDSSFLLHQTVESEKPSFLIEPKISNLMNSCDKYSFSCQS----DSQG---NSME 163

Query: 176 VQISSEFDEDFDAESIILDEEFEEGIDSIMGNLSVKKDAIESDDGHSQVHNSNCWYGNPM 235
             +   ++ED DAES ILDEE EEGIDSIMGNLSV KD  ++DDG   + + N WYGNPM
Sbjct: 164 --LCDGYEEDLDAES-ILDEEIEEGIDSIMGNLSVSKD--KTDDG--SIKDVNSWYGNPM 216

Query: 236 GIGFGGKLELGFGMRSGMKALRQVDEGNWWNFPI-DVLQISPKFNNSSGTGNSNRKGSSE 294
           G  F G      GMR G++ALR   E N WNFPI D+LQISP+ ++++ + +       +
Sbjct: 217 GFHFSGN-----GMRKGVRALRHGHESNLWNFPIVDMLQISPRLSSNNSSSSKKITSDFK 271

Query: 295 KRKKKVGKEKPVAESKVSELP-AKEESPIPKANSGELLLKLQYDDVLNAWSGKGSPFLDE 353
            +K K  ++K     ++  L  AK+ES +P+++SG LLLKL YD VLNAWS KGSPF +E
Sbjct: 272 SKKCKSDEKKKKKVVELKNLEMAKKESSVPQSSSG-LLLKLNYDGVLNAWSDKGSPFSEE 330

Query: 354 SLAPDGQGNDVSARLAQIDLFSD-GGLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRR 412
               +G GNDVSARLAQIDLFS+ GG+REASVLRYKEKRRTRLFSKKIRYQVRKVNAD+R
Sbjct: 331 ISGSEG-GNDVSARLAQIDLFSENGGVREASVLRYKEKRRTRLFSKKIRYQVRKVNADQR 389

Query: 413 PRMK 416
           PRMK
Sbjct: 390 PRMK 393

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549250|ref|XP_003543009.1| PREDICTED: protein CHLOROPLAST IMPORT APPARATUS 2-like isoform 1 [Glycine max]

 Score =  321 bits (823), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 235/440 (53%), Positives = 285/440 (64%), Gaps = 60/440 (13%)

Query: 2   SSYLSG-GGRTYALDLEIIKSPSHSTGTSHTSSSPLSTLSEASNSPLAISTRKARTPRKR 60
           SS LSG GGRTY  D E +KSPS ST TSHTSSSP ST+SE+SNSPLAIST+K RTPRKR
Sbjct: 3   SSCLSGAGGRTYGFDFEFVKSPSSSTFTSHTSSSPSSTISESSNSPLAISTKKPRTPRKR 62

Query: 61  PNQTYNEAAALLSTACPNIFSTKHLTNLNKFTTKPPDHRRHHQQQEPNQQFFD-ESSELL 119
           PNQTYNEAAALLSTA PN+FSTK+L    K            +   P  + FD ESSE L
Sbjct: 63  PNQTYNEAAALLSTAYPNLFSTKNLKTQGK-----------GKFSRPTSENFDYESSEPL 111

Query: 120 LPFRVIDD--SGFLLHQ----PILDKPRFPLEPKVTKFCE----NKLSCQNSGEVDFQGA 169
           LPFRV D   S FLL Q    PI+++      PKV    E    N  +C++ GE+     
Sbjct: 112 LPFRVFDGTASCFLLDQTGPKPIMER------PKVVSVQEKENNNNKACESPGEIS-SIV 164

Query: 170 NHNPMEVQISSEFDEDFDAESIILDEEFEEGIDSIMGNLSVKKDAIESDDGHSQVHNSNC 229
           N N   V+++ + +E  DAES ILDEE EEGIDSIMG+ S+++    S+D  S +     
Sbjct: 165 NFN--SVELNDDGEESLDAES-ILDEEIEEGIDSIMGS-SIQE---VSNDAVSNL----- 212

Query: 230 WYGNPMGIGFGGKLELGFGMRSGMKALRQVDEGNWWNFP-IDVLQISPKFNNSSGTGNSN 288
               P  + F GKLE     R  ++ALR V++GNWWNFP +D+L ISPK N       + 
Sbjct: 213 ----PWIMPFDGKLEFP---RPRVRALRHVEDGNWWNFPAVDILSISPKINTKPPPVAAE 265

Query: 289 RKGSSEKRKKKVGKEKPVAESKVSELPAKEESPIPKANSGELLLKLQYDDVLNAWSGKGS 348
           +K   +K+     ++  V E K +ELP  ++          L+LKL YDDV NAWS +G+
Sbjct: 266 KKMKKKKKVATPAEKTVVVELKNAELPKPKQG---------LMLKLNYDDVRNAWSDRGT 316

Query: 349 PFLDESLAPDGQGNDVSARLAQIDLFSD-GGLREASVLRYKEKRRTRLFSKKIRYQVRKV 407
           PF D+S   D  GNDV+ARL+QIDL  D GG+REASVLRYKEKRRTRLFSKKIRYQVRKV
Sbjct: 317 PFSDDSPLADVPGNDVTARLSQIDLLWDNGGVREASVLRYKEKRRTRLFSKKIRYQVRKV 376

Query: 408 NADRRPRMKGRFVRRPNSNA 427
           NADRRPRMKGRFVRR NS+A
Sbjct: 377 NADRRPRMKGRFVRRLNSSA 396

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562078|ref|XP_003549301.1| PREDICTED: protein CHLOROPLAST IMPORT APPARATUS 2-like [Glycine max]

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 237/440 (53%), Positives = 282/440 (64%), Gaps = 54/440 (12%)

Query: 2   SSYLSG-GGRTYALDLEIIKSPSHSTGTSHTSSSPLSTLSEASNSPLAISTRKARTPRKR 60
           SS LSG GGRTY  D E +KSPS ST TSHTSSSP ST+SE+SNSPLAIST+K RTPRKR
Sbjct: 3   SSCLSGAGGRTYGFDFEFVKSPSSSTFTSHTSSSPSSTISESSNSPLAISTKKPRTPRKR 62

Query: 61  PNQTYNEAAALLSTACPNIFSTKHLTNLNKFTTKPPDHRRHHQQQEPNQQFFD-ESSELL 119
           PNQTYNEAAALLSTA PN+FSTK+L    K   K            P  + FD +SSELL
Sbjct: 63  PNQTYNEAAALLSTAYPNLFSTKNLKTQGKGKGK---------FSRPTSENFDYDSSELL 113

Query: 120 LPFRVIDD--SGFLLHQPILDKPRFPLE-PKVTKFCE---NKLSCQNSGEVDFQGANHNP 173
           LPFRV D   S FLL Q     P+ P+E PKV    E   N  +C++ GE+     N N 
Sbjct: 114 LPFRVFDGTASCFLLDQ---TGPK-PMERPKVVSVQEKDNNNKACESPGEIS-SIVNFN- 167

Query: 174 MEVQISSEFDEDFDAESIILDEEFEEGIDSIMGNLSVKKDAIESDDGHSQVHNSNCWYGN 233
             V+++ + +E  DAES ILDEE EEGIDSIMG+ S+++    S+D  S +         
Sbjct: 168 -SVELNDDGEESLDAES-ILDEEIEEGIDSIMGS-SIQE---VSNDAVSNL--------- 212

Query: 234 PMGIGFGGKLELGFGMRSGMKALRQVDEGNWWNFP-IDVLQISPKFNNSSGTGNSNRKGS 292
           P  + FGGKLE     R  ++ALR VD+GNWWNFP +D+L ISPK N          +  
Sbjct: 213 PWILPFGGKLEFP---RPRVRALRHVDDGNWWNFPAVDILSISPKINTKPPP--VAAEKK 267

Query: 293 SEKRKKKVGKEKPVAESKVSELPAKEESPIPKANSGELLLKLQYDDVLNAWSGKGSPFLD 352
            +K+K        V E K +ELP  ++          L+LKL YD V NAWS  G+PF D
Sbjct: 268 MKKKKVAAAPSPVVLELKNTELPKPKQG---------LMLKLDYDGVRNAWSDSGTPFTD 318

Query: 353 ESLAPDGQGNDVSARLAQIDLFSD-GGLREASVLRYKEKRRTRLFSKKIRYQVRKVNADR 411
           +S   D   NDV+ARL+QIDL  D GG+REASVLRYKEKRRTRLFSKKIRYQVRKVNADR
Sbjct: 319 DSPLADVPENDVTARLSQIDLLWDNGGVREASVLRYKEKRRTRLFSKKIRYQVRKVNADR 378

Query: 412 RPRMKGRFVRRPNSNAQDER 431
           RPRMKGRFVRR NS++   R
Sbjct: 379 RPRMKGRFVRRLNSSSNAHR 398

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549252|ref|XP_003543010.1| PREDICTED: protein CHLOROPLAST IMPORT APPARATUS 2-like isoform 2 [Glycine max]

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 227/431 (52%), Positives = 276/431 (64%), Gaps = 60/431 (13%)

Query: 2   SSYLSG-GGRTYALDLEIIKSPSHSTGTSHTSSSPLSTLSEASNSPLAISTRKARTPRKR 60
           SS LSG GGRTY  D E +KSPS ST TSHTSSSP ST+SE+SNSPLAIST+K RTPRKR
Sbjct: 3   SSCLSGAGGRTYGFDFEFVKSPSSSTFTSHTSSSPSSTISESSNSPLAISTKKPRTPRKR 62

Query: 61  PNQTYNEAAALLSTACPNIFSTKHLTNLNKFTTKPPDHRRHHQQQEPNQQFFD-ESSELL 119
           PNQTYNEAAALLSTA PN+FSTK+L    K            +   P  + FD ESSE L
Sbjct: 63  PNQTYNEAAALLSTAYPNLFSTKNLKTQGK-----------GKFSRPTSENFDYESSEPL 111

Query: 120 LPFRVIDD--SGFLLHQ----PILDKPRFPLEPKVTKFCE----NKLSCQNSGEVDFQGA 169
           LPFRV D   S FLL Q    PI+++      PKV    E    N  +C++ GE+     
Sbjct: 112 LPFRVFDGTASCFLLDQTGPKPIMER------PKVVSVQEKENNNNKACESPGEIS-SIV 164

Query: 170 NHNPMEVQISSEFDEDFDAESIILDEEFEEGIDSIMGNLSVKKDAIESDDGHSQVHNSNC 229
           N N   V+++ + +E  DAES ILDEE EEGIDSIMG+ S+++    S+D  S +     
Sbjct: 165 NFN--SVELNDDGEESLDAES-ILDEEIEEGIDSIMGS-SIQE---VSNDAVSNL----- 212

Query: 230 WYGNPMGIGFGGKLELGFGMRSGMKALRQVDEGNWWNFP-IDVLQISPKFNNSSGTGNSN 288
               P  + F GKLE     R  ++ALR V++GNWWNFP +D+L ISPK N       + 
Sbjct: 213 ----PWIMPFDGKLEFP---RPRVRALRHVEDGNWWNFPAVDILSISPKINTKPPPVAAE 265

Query: 289 RKGSSEKRKKKVGKEKPVAESKVSELPAKEESPIPKANSGELLLKLQYDDVLNAWSGKGS 348
           +K   +K+     ++  V E K +ELP  ++          L+LKL YDDV NAWS +G+
Sbjct: 266 KKMKKKKKVATPAEKTVVVELKNAELPKPKQG---------LMLKLNYDDVRNAWSDRGT 316

Query: 349 PFLDESLAPDGQGNDVSARLAQIDLFSD-GGLREASVLRYKEKRRTRLFSKKIRYQVRKV 407
           PF D+S   D  GNDV+ARL+QIDL  D GG+REASVLRYKEKRRTRLFSKKIRYQVRKV
Sbjct: 317 PFSDDSPLADVPGNDVTARLSQIDLLWDNGGVREASVLRYKEKRRTRLFSKKIRYQVRKV 376

Query: 408 NADRRPRMKGR 418
           NADRRPRMK R
Sbjct: 377 NADRRPRMKVR 387

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449532521|ref|XP_004173229.1| PREDICTED: protein CHLOROPLAST IMPORT APPARATUS 2-like [Cucumis sativus]

 Score =  290 bits (743), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 199/387 (51%), Positives = 244/387 (63%), Gaps = 39/387 (10%)

Query: 2   SSYLSGGGRTYALDLEIIKSPSHSTGTSHTSSSPLSTLSEASN--SPLAISTRKARTPRK 59
           S  +SGGGR Y  DLEI+KSPS S   +  +SSP STLSE+SN  + LAISTRK RTPRK
Sbjct: 3   SPCISGGGRAYNFDLEILKSPSSSWTRTSQTSSPSSTLSESSNNTTQLAISTRKLRTPRK 62

Query: 60  RPNQTYNEAAALLSTACPNIFSTKHLTNLNKFTTKPPDHRRHHQQQEPNQQFFDESSELL 119
           RPNQTYNEA  LLSTA PN+FSTKHLTN  KFT          +  + +   F ES+ELL
Sbjct: 63  RPNQTYNEATVLLSTAYPNVFSTKHLTNPRKFT----------KSHDDSSSLFCESAELL 112

Query: 120 LPFRVIDDSGFLLHQPIL-DKPRFPLEPKVTKFCENKLSCQNSGEVDFQGANHNPMEVQI 178
           LPFRVID SGFLLHQ +L +KP   +  K+T   EN+  C + GE+DFQ    N ME+  
Sbjct: 113 LPFRVIDSSGFLLHQLLLEEKPNSQIHSKLTNLWENR-PCSSPGEIDFQP---NSMEI-- 166

Query: 179 SSEFDEDFDAESIILDEEFEEGIDSIMGNLSV----KKDAIESDDGHSQVHNSNCWYGNP 234
             E  EDFDAES ILDEE EEGIDSIMGNLSV    K ++ +    ++  H  N W  NP
Sbjct: 167 --EEIEDFDAES-ILDEEIEEGIDSIMGNLSVDNLEKGNSTQDSCVNANNHPRN-WNWNP 222

Query: 235 MGIGFGGKLELGFGMRSGMK--ALRQVDEGNWWNFP-IDVLQISPKFN------NSSGTG 285
           +G+GF  K E GFG R G++  A+R VD GNWW FP +DV++ISPK N        + T 
Sbjct: 223 IGLGFNQKFESGFGFRKGIERTAIRGVDNGNWWRFPTVDVIEISPKLNPKPPAPAPTPTP 282

Query: 286 NSNRKGSSEKRKKKVGKEKPVAESKVSELPA---KEESPIPKANSGELLLKLQYDDVLNA 342
                  S K+KKK  ++  V ESK + +P    K E PIPK     LLLKL Y+ V +A
Sbjct: 283 TPTPAAVSTKKKKKKVEKLTVIESKKAAIPLQKEKSEKPIPKLKPTGLLLKLNYEAVADA 342

Query: 343 WSGKGSPFLDESLAPDGQGNDVSARLA 369
           WS +GSPF DE  + D  G+DV+ RL+
Sbjct: 343 WSSRGSPFSDEIPSSDTAGSDVNVRLS 369

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	442
TAIR|locus:2175564	435	CIA2 "chloroplast import appar	0.918	0.933	0.387	7.3e-59
TAIR|locus:2120850	409	CIL "AT4G25990" [Arabidopsis t	0.638	0.689	0.426	4.2e-47
TAIR|locus:2031180	417	BBX15 "B-box domain protein 15	0.108	0.115	0.795	1.5e-17
TAIR|locus:2007482	195	AT1G07050 "AT1G07050" [Arabido	0.203	0.461	0.516	8.9e-17
TAIR|locus:2201277	406	BBX14 "B-box domain protein 14	0.104	0.113	0.808	3.8e-16
TAIR|locus:2145698	339	AT5G14370 [Arabidopsis thalian	0.217	0.283	0.459	1.1e-15
TAIR|locus:2031581	392	BBX16 "B-box domain protein 16	0.106	0.119	0.812	2.9e-15
TAIR|locus:2028421	326	BBX17 "B-box domain protein 17	0.187	0.254	0.5	2.1e-13
TAIR|locus:2062749	183	AT2G46670 "AT2G46670" [Arabido	0.253	0.612	0.319	3.3e-09
UNIPROTKB|Q9FDX8	395	HD1 "Zinc finger protein HD1"	0.167	0.187	0.473	8.4e-08

TAIR|locus:2175564 CIA2 "chloroplast import apparatus 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 174/449 (38%), Positives = 228/449 (50%)

Query:     1 MSSYLSGGG---RTYALDLEIIKXXXXXXXXXXXXXXX-XXXXXEASNSPLAISTRKART 56
             MS+ LS GG     Y+ +LE +K                     E+SNSPLAISTRK RT
Sbjct:     1 MSACLSSGGGGAAAYSFELEKVKSPPPSSSTTTTRATSPSSTISESSNSPLAISTRKPRT 60

Query:    57 PRKRPNQTYNEAAALLSTACPNIFSTKHLTNLNKFTTKPPDHRRHHQQ-QEPNQQFFDES 115
              RKRPNQTYNEAA LLSTA PNIFS+    NL+   +K   H   +     P     D++
Sbjct:    61 QRKRPNQTYNEAATLLSTAYPNIFSS----NLS---SKQKTHSSSNSHFYGPLLSDNDDA 113

Query:   116 SELLLPFRVIDDSGFLLHQPILDKPRFPLEPKVTKFCENKLSCQNSGEVD-FQGANHNPM 174
             S+LLLP+  I++  FL H  I  K  F  + K      +   C   GE++ F  ++    
Sbjct:   114 SDLLLPYESIEEPDFLFHPTIQTKTEFFSDQKEVN---SGGDCYG-GEIEKFDFSDEFDA 169

Query:   175 EVQISSEFDEDFDA-ESIILDEEFEEGI-DS-IMGNLSVKKDAIESDDGH-SQVHNSNCW 230
             E  +  + +E  D+    +++     GI +S + G ++    +  +  G   Q+   N W
Sbjct:   170 ESILDEDIEEGIDSIMGTVVESNSNSGIYESRVPGMINRGGRSSSNRIGKLEQMMMINSW 229

Query:   231 YGNPMGIGFGGKLELGFGMRSGMKALRQVDEGNWWNF-PIDVLQISPKF----------- 278
               +  G  F     LG G+RS   ALR+ D+   W    +D  QISP+            
Sbjct:   230 NRSSNGFNF----PLGLGLRS---ALRENDDTKLWKIHTVDFEQISPRIQTVKTETAIST 282

Query:   279 -NNSSGTGNSNXXXXXXXXXXXXXXXXPVAESKVSELPAKEESPIPKANSGELLLKLQYD 337
              +     G                    V  + ++E  + E++          LLKL YD
Sbjct:   283 VDEEKSDGKKVVISGEKSNKKKKKKKMTVTTTLITESKSLEDTEETSLKRTGPLLKLDYD 342

Query:   338 DVLNAWSGKGSPFLDESLAPDGQGNDVSARLAQIDLFSDGGLREASVLRYKEKRRTRLFS 397
              VL AWS K SPF DE      +  DV+ARLAQIDLF D G+REASVLRYKEKRRTRLFS
Sbjct:   343 GVLEAWSDKTSPFPDE--IQGSEAVDVNARLAQIDLFGDSGMREASVLRYKEKRRTRLFS 400

Query:   398 KKIRYQVRKVNADRRPRMKGRFVRRPNSN 426
             KKIRYQVRK+NAD+RPRMKGRFVRRPN +
Sbjct:   401 KKIRYQVRKLNADQRPRMKGRFVRRPNES 429

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEP

GO:0045036 "protein targeting to chloroplast" evidence=RCA;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2120850 CIL "AT4G25990" [Arabidopsis thaliana (taxid:3702)]

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 147/345 (42%), Positives = 178/345 (51%)

Query:   112 FDESSELLLPFRVIDDSGFLLHQPILDKPRFPLEPKVTKFCENKLSCQNSGEVDFQGANH 171
             +DE+S+LLLP+  I+++ FL +      P  P   K   F E K       EV F     
Sbjct:    89 YDEASQLLLPYVSIEENEFLFN------PTIPT--KTEHFLEQK-------EVSF----- 128

Query:   172 NPMEVQISSEFDEDFDAESIILDEEFEEGIDSIMGNLSVKKDAIESDDGHSQVHNSNCWY 231
             + +EV      D DFDAESI LDEE EEGIDS MGN       IES+DG  +        
Sbjct:   129 DDLEVNGFGVLD-DFDAESI-LDEEIEEGIDSFMGN-------IESNDGDRENCYRVGRL 179

Query:   232 GNPMGIGFGGKLELGFGMRSGMKALRQVDEGNWWNFP-IDVLQISPKFNNSSGT----GN 286
                M   + G+  LG G+RS   +LRQ ++ NWW FP ++  QISP+   ++      G 
Sbjct:   180 EEIMKNAWNGRFRLGLGLRS---SLRQNNDENWWKFPTVEFDQISPRIQTTAAAAADDGQ 236

Query:   287 SNXXXXXXXXXXXXXXXXPVAESKVSE---LPAKEESPI-------PKANSG-ELLLKLQ 335
             SN                   + K  +    PA  ES         PK       LLKL 
Sbjct:   237 SNVVDSSKIKTIVTAEGDKKKKKKKKKKKVAPAAAESKSSEVTDSNPKLEQRVSPLLKLD 296

Query:   336 YDDVLNAWSGKGSPFLDESLAPDGQGNDVSARLAQIDLFSDGGLREASVLRYKEKRRTRL 395
             YD VL AWSGK SPF DE L  D  G D   RL +IDLF + G+REASVLRYKEKRR RL
Sbjct:   297 YDGVLEAWSGKESPFSDEILGSDADGVDFHVRLGEIDLFGESGMREASVLRYKEKRRNRL 356

Query:   396 FSKKIRYQVRKVNADRRPRMK---------------GRFVRRPNS 425
             FSKKIRYQVRK+NAD+RPRMK               GRFVRRPN+
Sbjct:   357 FSKKIRYQVRKLNADQRPRMKVKDWHCNIVVVSHQQGRFVRRPNA 401

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2031180 BBX15 "B-box domain protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 1.5e-17, Sum P(3) = 1.5e-17
 Identities = 39/49 (79%), Positives = 45/49 (91%)

Query:   374 FSDGGLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRR 422
             F DGG REA V RY+EKRRTRLFSKKIRY+VRK+NA++RPRMKGRFV+R
Sbjct:   356 FGDGG-REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 403

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2007482 AT1G07050 "AT1G07050" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 8.9e-17, P = 8.9e-17
 Identities = 48/93 (51%), Positives = 60/93 (64%)

Query:   330 LLLKLQYDDVLNAWSGKGSPFLDESLAPDGQGNDVSARLAQIDLFSDGGLREASVLRYKE 389
             L L L + +V++AWS    P   ++   D   N V      +        REASVLRYKE
Sbjct:   104 LKLNLNHQEVIDAWSDHQKPLWTDTSTLD---NSVYRGEVPVIEEKRNMRREASVLRYKE 160

Query:   390 KRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRR 422
             KR++RLFSKKIRYQVRK+NAD+RPR KGRFV+R
Sbjct:   161 KRQSRLFSKKIRYQVRKLNADKRPRFKGRFVKR 193

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0007623 "circadian rhythm" evidence=RCA

TAIR|locus:2201277 BBX14 "B-box domain protein 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 3.8e-16, Sum P(3) = 3.8e-16
 Identities = 38/47 (80%), Positives = 44/47 (93%)

Query:   376 DGGLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRR 422
             DGG REA V RY+EKRRTRLFSKKIRY+VRK+NA++RPRMKGRFV+R
Sbjct:   354 DGG-REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 399

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2145698 AT5G14370 [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 1.1e-15, P = 1.1e-15
 Identities = 51/111 (45%), Positives = 70/111 (63%)

Query:   330 LLLKLQYDDVLNAWSGKGSPFLD---ESLAPD--------GQGNDVSARLAQIDLFSDG- 377
             L LKL Y+ ++ AWS KG+ ++D       PD          G +     A  ++ +   
Sbjct:   229 LALKLDYEQIMEAWSDKGTLYVDGEPPQTVPDLHASADGFNDGGEAGNLWAVPEMETTER 288

Query:   378 ---GLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRPNS 425
                G REAS+LRYKEKR+ RLFSK+IRYQVRK+NA++RPR+KGRFV+R +S
Sbjct:   289 LWRGHREASLLRYKEKRQNRLFSKRIRYQVRKLNAEKRPRVKGRFVKREDS 339

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2031581 BBX16 "B-box domain protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 2.9e-15, Sum P(3) = 2.9e-15
 Identities = 39/48 (81%), Positives = 45/48 (93%)

Query:   375 SDGGLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRR 422
             SDG  REA VLRYKEKRRTRLFSKKIRY+VRK+NA++RPR+KGRFV+R
Sbjct:   341 SDGE-REARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRPRIKGRFVKR 387

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

GO:0009641 "shade avoidance" evidence=IMP

GO:0010223 "secondary shoot formation" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

TAIR|locus:2028421 BBX17 "B-box domain protein 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
 Identities = 46/92 (50%), Positives = 59/92 (64%)

Query:   333 KLQYDDVLNAWSGKGSPFLDESLAPDGQGNDVSARLAQ--IDLFSDGGLREASVLRYKEK 390
             +L Y++V+ AW  + SP        D + N  S +L    I+       REA V RY++K
Sbjct:   236 RLNYENVIAAWDKQESP-------RDVKNNTSSFQLVPPGIEEKRVRSEREARVWRYRDK 288

Query:   391 RRTRLFSKKIRYQVRKVNADRRPRMKGRFVRR 422
             R+ RLF KKIRY+VRKVNAD+RPRMKGRFVRR
Sbjct:   289 RKNRLFEKKIRYEVRKVNADKRPRMKGRFVRR 320

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2062749 AT2G46670 "AT2G46670" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 3.3e-09, P = 3.3e-09
 Identities = 39/122 (31%), Positives = 63/122 (51%)

Query:   306 VAESKVSELPAKEESPIPKANSGELLLKLQYDDVLNAWSGKGSPFLDESLAPDGQGNDVS 365
             V +S V+    K++SPIP  ++ E     + +         GS   +E +A      +  
Sbjct:    68 VLQSTVTN--QKQDSPIPVESNREKAASKEVE--------AGSQSTNEGIAGQSSSTEKP 117

Query:   366 ARLAQIDLFSDGGLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRPNS 425
                           REA++++++ KR+ R F KK+RYQ RK  A++RPR+KG+FVR  NS
Sbjct:   118 KEEESAKQRWSRSQREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVRTVNS 177

Query:   426 NA 427
             +A
Sbjct:   178 DA 179

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9FDX8 HD1 "Zinc finger protein HD1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 151 (58.2 bits), Expect = 8.4e-08, P = 8.4e-08
 Identities = 36/76 (47%), Positives = 45/76 (59%)

Query:   355 LAPDGQGNDVSARLAQIDLFSDGGLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPR 414
             L P G  N  S    Q+ L      REA VLRY+EK++ R F K IRY+ RK  A+ RPR
Sbjct:   301 LTPAGAINLFSGPSLQMSLHFSSMDREARVLRYREKKKARKFEKTIRYETRKAYAEARPR 360

Query:   415 MKGRFVRRPNSNAQDE 430
             +KGRF +R  S+ Q E
Sbjct:   361 IKGRFAKR--SDVQIE 374

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009909 "regulation of flower development" evidence=IMP

GO:0010229 "inflorescence development" evidence=IGI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0048571 "long-day photoperiodism" evidence=IEP

GO:0048572 "short-day photoperiodism" evidence=IEP

GO:0048576 "positive regulation of short-day photoperiodism, flowering" evidence=IMP

GO:0048579 "negative regulation of long-day photoperiodism, flowering" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00060622 hypothetical protein (449 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	442
pfam06203	45	pfam06203, CCT, CCT motif	1e-21

>gnl|CDD|203407 pfam06203, CCT, CCT motif

 Score = 87.3 bits (217), Expect = 1e-21
 Identities = 29/44 (65%), Positives = 36/44 (81%)

Query: 380 REASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRP 423
           REA++LRYKEKR+TR F KKIRY  RK  A+ RPR+KGRFV++ 
Sbjct: 1   REAALLRYKEKRKTRKFDKKIRYASRKAVAESRPRVKGRFVKQS 44

This short motif is found in a number of plant proteins. It is rich in basic amino acids and has been called a CCT motif after Co, Col and Toc1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif. Toc1 mutants have been identified in this region. Length = 45

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	442
PF06203	45	CCT: CCT motif; InterPro: IPR010402 The CCT (CONST	99.74
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	96.43
PF09425	27	CCT_2: Divergent CCT motif; InterPro: IPR018467 Th	93.08

>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction

Probab=99.74  E-value=5.5e-19  Score=132.22  Aligned_cols=45  Identities=58%  Similarity=1.007  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHhhhccCCCcccchhhhcccccCCCcCcccccCCC
Q 013500          380 REASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRPN  424 (442)
Q Consensus       380 Rea~v~RYreKRk~R~f~KkIRY~~RK~~Ae~RPRvKGRFVk~~~  424 (442)
                      |+++|+||+|||++|+|+|+|+|+|||.+|+.|||||||||+.++
T Consensus         1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~~A~~R~RvkGRFvk~~e   45 (45)
T PF06203_consen    1 REEKLQRYREKRKRRNFEKKIRYESRKAVADKRPRVKGRFVKKSE   45 (45)
T ss_pred             CHHHHHHHHHHHHhhcccccCCcchHHHHHhhCCccCCcccCCCC
Confidence            789999999999999999999999999999999999999999864

The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=96.43  E-value=0.0012  Score=58.38  Aligned_cols=41  Identities=54%  Similarity=0.821  Sum_probs=39.4

Q ss_pred             chhHHHHHHHHHHHhhhccCCCcccchhhhcccccCCCcCc
Q 013500          377 GGLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKG  417 (442)
Q Consensus       377 ~~~Rea~v~RYreKRk~R~f~KkIRY~~RK~~Ae~RPRvKG  417 (442)
                      ...|++.+.||++++..|.|.++++|..|+.+|+.|||+||
T Consensus       290 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (340)
T KOG1601|consen  290 SHQRVAEVRRYRESRDGRYFDKGIRYASRKSNAESRPRLKG  330 (340)
T ss_pred             cchHHHHHhhccCccCCcccccccccccccccchhcccccc
Confidence            35899999999999999999999999999999999999999

>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1

Probab=93.08  E-value=0.057  Score=37.55  Aligned_cols=24  Identities=50%  Similarity=0.693  Sum_probs=9.9

Q ss_pred             hHHHHHHHHHHHhhhccCCCcccch
Q 013500          379 LREASVLRYKEKRRTRLFSKKIRYQ  403 (442)
Q Consensus       379 ~Rea~v~RYreKRk~R~f~KkIRY~  403 (442)
                      .|.+.|+||.||||.|... +.-|.
T Consensus         3 aRK~SLqRFLeKRK~R~~~-~~PY~   26 (27)
T PF09425_consen    3 ARKASLQRFLEKRKDRLAA-KSPYQ   26 (27)
T ss_dssp             ---HHHHHHHHHH------------
T ss_pred             hHHHHHHHHHHHHHHhhcc-CCCCC
Confidence            5999999999999999987 66664

The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	442
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 8e-05
 Identities = 56/384 (14%), Positives = 101/384 (26%), Gaps = 107/384 (27%)

Query: 98  HRRHHQQQEPNQQFFDESSELLLPFR--VIDDSGFLLHQPILDKPRFPLEPKVTKFCENK 155
           H  HH   E  +  + +  ++L  F    +D+      + + D P+  L  +        
Sbjct: 2   HHHHHMDFETGEHQY-QYKDILSVFEDAFVDNFDC---KDVQDMPKSILSKEEIDHIIMS 57

Query: 156 --------------LSCQNSGEVDFQGANHNPMEVQISSEFDEDFDAESIILDEEFEEGI 201
                         LS Q      F           + S    +    S++    + E  
Sbjct: 58  KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT-RMYIEQR 116

Query: 202 DSIM-GNLSVKKDAIESDDGHSQVHN------SNCW---YGNPMGIGFGGKLELGFGMRS 251
           D +   N    K  +     + ++                G  +  G  GK  +   +  
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG--VL-GS-GKTWVALDVCL 172

Query: 252 GMKALRQVDEGNWW-NF-----PIDVL--------QISPKFNN--SSGTGNSNRKGSSEK 295
             K   ++D   +W N      P  VL        QI P + +     +    R  S + 
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 296 RKKKVGKEKPVAESKVSELPAKEESPIPKANSGELLLKLQYDDVLNAWSGK----GSPFL 351
             +++ K KP                         LL L   +V NA +          L
Sbjct: 233 ELRRLLKSKPYENC---------------------LLVL--LNVQNAKAWNAFNLSCKIL 269

Query: 352 ----DESLAPDGQGNDVSARLAQIDLFSDGGLREASVLRYKEKRRTRLFSK-------KI 400
                + +  D      +  ++         L    V          L  K        +
Sbjct: 270 LTTRFKQVT-DFLSAATTTHISLDHH--SMTLTPDEVK--------SLLLKYLDCRPQDL 318

Query: 401 RYQVRKVNADRRPR---MKGRFVR 421
             +V   N    PR   +    +R
Sbjct: 319 PREVLTTN----PRRLSIIAESIR 338

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	442
3ogl_Q	21	JAZ1 incomplete degron peptide; leucine-rich repea	89.99
3ogk_Q	22	JAZ1 incomplete degron peptide; leucine rich repea	89.07

>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}

Probab=89.07  E-value=0.13  Score=33.38  Aligned_cols=19  Identities=53%  Similarity=0.723  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHhhhccCCC
Q 013500          380 REASVLRYKEKRRTRLFSK  398 (442)
Q Consensus       380 Rea~v~RYreKRk~R~f~K  398 (442)
                      |.+.|+||.||||.|...+
T Consensus         1 Rk~SLqRFleKRk~R~~~~   19 (22)
T 3ogk_Q            1 RRASLHRFLEKRKDRVTSK   19 (26)
T ss_pred             CchhHHHHHHHHHHHhhcc
Confidence            6789999999999998654

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00