Citrus Sinensis ID: 013510

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-
MASSVASKTFLAAPRTDGSLGSLLPDLRRQLPSPNVQILIRSRTPKKLQVKAAGSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQGTMKLPELEPAPANFQM
cccccccccccccccccccccccccccccccccccEEEEEccccccccEEEcccccccccEEEEccccccccccEEEEEcccccccccHHHHHHHHccccccccccccccccccEEEEEccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEcccEEccccccccccccHHHHHccccccccHHHHHHHHHHHHHHHHcccccccEEEEEEEEccccccccccccccHHHHHHHccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccccccEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccc
cccccccccccccccccccccccccccccccccccEEEEcccccccEEEEEEccccccEEEEEEEcccccccEEEEEEccccccccccHHHHHHHHHcccccccccccccccccEEEEEEccEccccccccEEEEEEccccccccHHHHHHHcccccccHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEccccEccccccccccccHHHHHccccccccHHHHHHHHHHHHHHHHccccEEEEEEEEEEccccccccccHcHHHHHHHHHHHcccccccEEEccccHEEEEccccccccccccccccEEEEEcccccEEcccccccEEEEEEEEcccccEcccccEEcccccEEEEEEcccccccccHcHcHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccc
massvasktflaaprtdgslgsllpdlrrqlpspnvqilirsrtpkklQVKAAGSAFGTYFRVttfgeshgggvgciidgcppriplseadmqvdldrrrpgqsrittprketdtckiysgvsegvttgtpihvfvpntdqrghdysemsvayrpshadatydmkygvrsvqgggrssaretigrvapGAVAKKILKQFAGTEILAYVSQAhnvvlpedvvdhemltLDQVesnivrcpdpeyAEKMIAAIDAVRVRGDSVGGVVTCIVrncprglgspvFDKLEAELAKAMMslpatkgfevgsgfagtfltgsehndefytdefgnirtrtnrsggiqggisngeIINMRiafkptstigrkqntvtreKKETELIargrhdpcvvpraVPMVEAMVALVLMDQLMAQHAQchlfpinpdlqgtmklpelepapanfqm
massvasktflaaprtdgslgsllpdlrrqlpspnvqilirsrtpkklqVKAAGSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEadmqvdldrrrpgqsrittprketdtckiysgvsegvttgtpiHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVrncprglgspVFDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFgnirtrtnrsggiqggisngeiINMRIafkptstigrkqntvtrekketeliargrhdpcvvPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQGTMKLPELEPAPANFQM
MASSVASKTFLAAPRTDGSLGSLLPDLRRQLPSPNVQILIRSRTPKKLQVKAAGSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYgvrsvqgggrssARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAvrvrgdsvggvvTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQGTMKLPELEPAPANFQM
************************************QILIRSRTPKKLQVKAAGSAFGTYFRVTTFGESHGGGVGCIIDGCPPRI*****************************TCKIYSGVSEGVTTGTPIHVFVPNT*********************TYDMKYGV*************TIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTST****************LIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPD*******************
******************************************************SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQS***TPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDL******************
MASSVASKTFLAAPRTDGSLGSLLPDLRRQLPSPNVQILIRSRTPKKLQVKAAGSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVR**********RETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQGTMKLPELEPAPANFQM
******************************LPSPNVQILIRSRTPKKLQVKAAGSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRR***********KETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQGTMKLPEL*********
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
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MASSVASKTFLAAPRTDGSLGSLLPDLRRQLPSPNVQILIRSRTPKKLQVKAAGSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQGTMKLPELEPAPANFQM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query441 2.2.26 [Sep-21-2011]
P57720436 Chorismate synthase, chlo yes no 0.979 0.990 0.814 0.0
P27793447 Chorismate synthase, chlo N/A no 0.959 0.946 0.807 0.0
Q42884440 Chorismate synthase 1, ch N/A no 0.956 0.959 0.794 0.0
Q42885431 Chorismate synthase 2, ch N/A no 0.952 0.974 0.790 0.0
B7JVZ9362 Chorismate synthase OS=Cy yes no 0.818 0.997 0.703 1e-146
B7KIU0362 Chorismate synthase OS=Cy yes no 0.811 0.988 0.689 1e-144
Q8DLM1363 Chorismate synthase OS=Th yes no 0.816 0.991 0.691 1e-143
B8HNK4362 Chorismate synthase OS=Cy yes no 0.816 0.994 0.692 1e-142
Q31RS5362 Chorismate synthase OS=Sy yes no 0.818 0.997 0.686 1e-142
P23353362 Chorismate synthase OS=Sy N/A no 0.811 0.988 0.703 1e-142
>sp|P57720|AROC_ARATH Chorismate synthase, chloroplastic OS=Arabidopsis thaliana GN=EMB1144 PE=2 SV=2 Back     alignment and function desciption
 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/437 (81%), Positives = 398/437 (91%), Gaps = 5/437 (1%)

Query: 2   ASSVASKTFLAAPRTDGSLGSL-LPDLRRQLPSPNVQILIRSRTPKKLQVKAAGSAFGTY 60
           +SS+ SK+ L + +    LGS  LP   R+L SP VQI +R++T K  Q++A GS++GT+
Sbjct: 3   SSSLTSKSILGSTK----LGSSSLPSELRRLSSPAVQISLRTQTRKNFQIQATGSSYGTH 58

Query: 61  FRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYS 120
           FRV+TFGESHGGGVGCIIDGCPPRIPL+E+D+Q DLDRRRPGQSRITTPRKETDTC+I S
Sbjct: 59  FRVSTFGESHGGGVGCIIDGCPPRIPLTESDLQFDLDRRRPGQSRITTPRKETDTCRISS 118

Query: 121 GVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSAR 180
           GVSEG+TTGTPIHVFVPNTDQRG DYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSAR
Sbjct: 119 GVSEGMTTGTPIHVFVPNTDQRGLDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSAR 178

Query: 181 ETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPD 240
           ETIGRVAPGA+AKKILKQFAGTEILAYVSQ H+VVLPE++VDHE LTL+Q+E+NIVRCP+
Sbjct: 179 ETIGRVAPGALAKKILKQFAGTEILAYVSQVHHVVLPEELVDHENLTLEQIENNIVRCPN 238

Query: 241 PEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKG 300
           PEYAEKMIAAIDAVR +G+SVGGVVTCIVRN PRGLG+PVFDKLEAELAKA MSLPATKG
Sbjct: 239 PEYAEKMIAAIDAVRTKGNSVGGVVTCIVRNAPRGLGTPVFDKLEAELAKACMSLPATKG 298

Query: 301 FEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTST 360
           FE GSGFAGTFLTG EHNDEFYTDE G IRTRTNRSGGIQGGISNGEIINMR+AFKPTST
Sbjct: 299 FEFGSGFAGTFLTGLEHNDEFYTDENGRIRTRTNRSGGIQGGISNGEIINMRVAFKPTST 358

Query: 361 IGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPIN 420
           IGRKQNTVTR+K ETE+IARGRHDPCVVPRAVPMVEAMVALVL+DQLMAQ+AQCHLFPIN
Sbjct: 359 IGRKQNTVTRDKVETEMIARGRHDPCVVPRAVPMVEAMVALVLVDQLMAQYAQCHLFPIN 418

Query: 421 PDLQGTMKLPELEPAPA 437
           P+LQ  +++ + + A A
Sbjct: 419 PELQEPLQIEQPQNATA 435
Catalyzes the last common step of the biosynthesis of aromatic amino acids, produced via the shikimic acid pathway.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 5
>sp|P27793|AROC_CORSE Chorismate synthase, chloroplastic OS=Corydalis sempervirens PE=1 SV=1 Back     alignment and function description
>sp|Q42884|AROC1_SOLLC Chorismate synthase 1, chloroplastic OS=Solanum lycopersicum GN=CS1 PE=2 SV=1 Back     alignment and function description
>sp|Q42885|AROC2_SOLLC Chorismate synthase 2, chloroplastic OS=Solanum lycopersicum GN=CS2 PE=2 SV=1 Back     alignment and function description
>sp|B7JVZ9|AROC_CYAP8 Chorismate synthase OS=Cyanothece sp. (strain PCC 8801) GN=aroC PE=3 SV=1 Back     alignment and function description
>sp|B7KIU0|AROC_CYAP7 Chorismate synthase OS=Cyanothece sp. (strain PCC 7424) GN=aroC PE=3 SV=1 Back     alignment and function description
>sp|Q8DLM1|AROC_THEEB Chorismate synthase OS=Thermosynechococcus elongatus (strain BP-1) GN=aroC PE=3 SV=1 Back     alignment and function description
>sp|B8HNK4|AROC_CYAP4 Chorismate synthase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=aroC PE=3 SV=1 Back     alignment and function description
>sp|Q31RS5|AROC_SYNE7 Chorismate synthase OS=Synechococcus elongatus (strain PCC 7942) GN=aroC PE=3 SV=1 Back     alignment and function description
>sp|P23353|AROC_SYNY3 Chorismate synthase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=aroC PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query441
224109756437 chorismate synthase [Populus trichocarpa 0.984 0.993 0.842 0.0
255577383435 Chorismate synthase, chloroplast precurs 0.963 0.977 0.840 0.0
224100795438 chorismate synthase [Populus trichocarpa 0.986 0.993 0.832 0.0
297852508435 EMB1144 [Arabidopsis lyrata subsp. lyrat 0.984 0.997 0.823 0.0
18402389436 chorismate synthase [Arabidopsis thalian 0.979 0.990 0.814 0.0
356576217435 PREDICTED: chorismate synthase, chloropl 0.981 0.995 0.814 0.0
76782200434 putative chorismate synthase [Fagus sylv 0.979 0.995 0.819 0.0
12321114435 chorismate synthase, putative [Arabidops 0.977 0.990 0.812 0.0
449464390439 PREDICTED: chorismate synthase, chloropl 0.959 0.963 0.812 0.0
225449068436 PREDICTED: chorismate synthase, chloropl 0.968 0.979 0.807 0.0
>gi|224109756|ref|XP_002315301.1| chorismate synthase [Populus trichocarpa] gi|118487444|gb|ABK95550.1| unknown [Populus trichocarpa] gi|222864341|gb|EEF01472.1| chorismate synthase [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/437 (84%), Positives = 395/437 (90%), Gaps = 3/437 (0%)

Query: 2   ASSVASKTFLAAPRTDGSLGSLLPDLRRQLPSPNVQILIRSRTPKKLQVKAAGSAFGTYF 61
           +S++ SK+FL + R DG+  S+  DLR+ L   +VQI  RSR PKKLQ+ AAGS FGT F
Sbjct: 3   SSTLTSKSFLGSSRIDGA--SISSDLRK-LSISSVQISFRSRIPKKLQINAAGSTFGTNF 59

Query: 62  RVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSG 121
           RVTTFGESHGGGVGCIIDGCPPRIPLSEADMQ DLDRRRPGQSRITTPRKETDTCKI SG
Sbjct: 60  RVTTFGESHGGGVGCIIDGCPPRIPLSEADMQFDLDRRRPGQSRITTPRKETDTCKISSG 119

Query: 122 VSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARE 181
           VSEG+TTGTPIHVFVPNTDQRG DYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARE
Sbjct: 120 VSEGLTTGTPIHVFVPNTDQRGLDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARE 179

Query: 182 TIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDP 241
           TIGRVA G VAKKILK +AGTEILAYVSQ H VVLPE VVDH+ LTLDQ+ESNIVRCPDP
Sbjct: 180 TIGRVAAGGVAKKILKLYAGTEILAYVSQVHKVVLPEGVVDHDSLTLDQMESNIVRCPDP 239

Query: 242 EYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGF 301
           EYAEKMIAAIDAVRV+GDSVGGVVTCIVRN PRGLGSPVFDKLEAELAKA MSLPATKGF
Sbjct: 240 EYAEKMIAAIDAVRVKGDSVGGVVTCIVRNAPRGLGSPVFDKLEAELAKAAMSLPATKGF 299

Query: 302 EVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTI 361
           E GSGFAGT LTGSEHNDEFYTD+ G IRTRTNRSGGIQGGISNGEIINMRIAFKPTSTI
Sbjct: 300 EFGSGFAGTLLTGSEHNDEFYTDKHGRIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTI 359

Query: 362 GRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINP 421
           G+KQ+TVTR+KKET+LIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQ++QC+L PIN 
Sbjct: 360 GKKQHTVTRDKKETDLIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQYSQCYLLPINS 419

Query: 422 DLQGTMKLPELEPAPAN 438
           +LQ  + +P LE A A+
Sbjct: 420 ELQEPLIMPRLEAANAS 436

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255577383|ref|XP_002529571.1| Chorismate synthase, chloroplast precursor, putative [Ricinus communis] gi|223530947|gb|EEF32805.1| Chorismate synthase, chloroplast precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224100795|ref|XP_002312018.1| chorismate synthase [Populus trichocarpa] gi|222851838|gb|EEE89385.1| chorismate synthase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297852508|ref|XP_002894135.1| EMB1144 [Arabidopsis lyrata subsp. lyrata] gi|297339977|gb|EFH70394.1| EMB1144 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18402389|ref|NP_564534.1| chorismate synthase [Arabidopsis thaliana] gi|83300489|sp|P57720.2|AROC_ARATH RecName: Full=Chorismate synthase, chloroplastic; AltName: Full=5-enolpyruvylshikimate-3-phosphate phospholyase; AltName: Full=Protein EMBRYO DEFECTIVE 1144; Flags: Precursor gi|15982824|gb|AAL09759.1| At1g48850/T24P22_3 [Arabidopsis thaliana] gi|53749180|gb|AAU90075.1| At1g48850 [Arabidopsis thaliana] gi|110742465|dbj|BAE99151.1| hypothetical protein [Arabidopsis thaliana] gi|332194235|gb|AEE32356.1| chorismate synthase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356576217|ref|XP_003556230.1| PREDICTED: chorismate synthase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|76782200|gb|ABA54870.1| putative chorismate synthase [Fagus sylvatica] Back     alignment and taxonomy information
>gi|12321114|gb|AAG50662.1|AC084242_6 chorismate synthase, putative [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449464390|ref|XP_004149912.1| PREDICTED: chorismate synthase, chloroplastic-like [Cucumis sativus] gi|449505691|ref|XP_004162542.1| PREDICTED: chorismate synthase, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225449068|ref|XP_002275232.1| PREDICTED: chorismate synthase, chloroplastic [Vitis vinifera] gi|296086029|emb|CBI31470.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query441
TAIR|locus:2028549436 EMB1144 "embryo defective 1144 0.981 0.993 0.768 1.5e-177
CGD|CAL0002708413 ARO2 [Candida albicans (taxid: 0.814 0.869 0.531 1.6e-95
POMBASE|SPCC1223.14395 SPCC1223.14 "chorismate syntha 0.451 0.503 0.49 8.9e-92
SGD|S000003116376 ARO2 "Bifunctional chorismate 0.814 0.954 0.509 1.3e-91
UNIPROTKB|G4N9G9424 MGG_03281 "Chorismate synthase 0.614 0.639 0.515 1.3e-90
UNIPROTKB|P12008361 aroC "AroC" [Escherichia coli 0.791 0.966 0.484 2e-81
UNIPROTKB|Q9KQ85361 aroC "Chorismate synthase" [Vi 0.791 0.966 0.479 1.6e-79
TIGR_CMR|VC_2116361 VC_2116 "chorismate synthase" 0.791 0.966 0.479 1.6e-79
TIGR_CMR|CPS_3150373 CPS_3150 "chorismate synthase" 0.829 0.981 0.458 1e-77
TIGR_CMR|SPO_0267366 SPO_0267 "chorismate synthase" 0.800 0.964 0.427 7.5e-73
TAIR|locus:2028549 EMB1144 "embryo defective 1144" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1724 (611.9 bits), Expect = 1.5e-177, P = 1.5e-177
 Identities = 335/436 (76%), Positives = 375/436 (86%)

Query:     2 ASSVASKTFLAAPRTDGSLGSLLPDLRRQLPSPNVQILIRSRTPKKLQVKAAGSAFGTYF 61
             +SS+ SK+ L + +  GS  S LP   R+L SP VQI +R++T K  Q++A GS++GT+F
Sbjct:     3 SSSLTSKSILGSTKL-GS--SSLPSELRRLSSPAVQISLRTQTRKNFQIQATGSSYGTHF 59

Query:    62 RVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSG 121
             RV+TFGESHGGGVGCIIDGCPPRIPL+E+D+Q DLDRRRPGQSRITTPRKETDTC+I SG
Sbjct:    60 RVSTFGESHGGGVGCIIDGCPPRIPLTESDLQFDLDRRRPGQSRITTPRKETDTCRISSG 119

Query:   122 VSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXARE 181
             VSEG+TTGTPIHVFVPNTDQRG DYSEMSVAYRPSHADATYDMKY            ARE
Sbjct:   120 VSEGMTTGTPIHVFVPNTDQRGLDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARE 179

Query:   182 TIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDP 241
             TIGRVAPGA+AKKILKQFAGTEILAYVSQ H+VVLPE++VDHE LTL+Q+E+NIVRCP+P
Sbjct:   180 TIGRVAPGALAKKILKQFAGTEILAYVSQVHHVVLPEELVDHENLTLEQIENNIVRCPNP 239

Query:   242 EYAEKMIAAIDAXXXXXXXXXXXXTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGF 301
             EYAEKMIAAIDA            TCIVRN PRGLG+PVFDKLEAELAKA MSLPATKGF
Sbjct:   240 EYAEKMIAAIDAVRTKGNSVGGVVTCIVRNAPRGLGTPVFDKLEAELAKACMSLPATKGF 299

Query:   302 EVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTI 361
             E GSGFAGTFLTG EHNDEFYTDE G IRTRTNRSGGIQGGISNGEIINMR+AFKPTSTI
Sbjct:   300 EFGSGFAGTFLTGLEHNDEFYTDENGRIRTRTNRSGGIQGGISNGEIINMRVAFKPTSTI 359

Query:   362 GRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINP 421
             GRKQNTVTR+K ETE+IARGRHDPCVVPRAVPMVEAMVALVL+DQLMAQ+AQCHLFPINP
Sbjct:   360 GRKQNTVTRDKVETEMIARGRHDPCVVPRAVPMVEAMVALVLVDQLMAQYAQCHLFPINP 419

Query:   422 DLQGTMKLPELEPAPA 437
             +LQ  +++ + + A A
Sbjct:   420 ELQEPLQIEQPQNATA 435
GO:0004107 "chorismate synthase activity" evidence=IEA
GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IEA;TAS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0005730 "nucleolus" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0006865 "amino acid transport" evidence=RCA
GO:0009611 "response to wounding" evidence=RCA
GO:0009805 "coumarin biosynthetic process" evidence=RCA
GO:0009536 "plastid" evidence=IDA
CGD|CAL0002708 ARO2 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
POMBASE|SPCC1223.14 SPCC1223.14 "chorismate synthase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
SGD|S000003116 ARO2 "Bifunctional chorismate synthase and flavin reductase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|G4N9G9 MGG_03281 "Chorismate synthase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|P12008 aroC "AroC" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KQ85 aroC "Chorismate synthase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2116 VC_2116 "chorismate synthase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_3150 CPS_3150 "chorismate synthase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0267 SPO_0267 "chorismate synthase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q3AMV2AROC_SYNSC4, ., 2, ., 3, ., 50.61640.82080.9945yesno
P28777AROC_YEAST4, ., 2, ., 3, ., 50.54490.81400.9547yesno
Q31RS5AROC_SYNE74, ., 2, ., 3, ., 50.68680.81850.9972yesno
A5GIL9AROC_SYNPW4, ., 2, ., 3, ., 50.61260.81850.9972yesno
Q7U9F0AROC_SYNPX4, ., 2, ., 3, ., 50.62190.81850.9944yesno
P27793AROC_CORSE4, ., 2, ., 3, ., 50.80740.95910.9463N/Ano
Q8F9N4AROC_LEPIN4, ., 2, ., 3, ., 50.53290.83670.9710yesno
Q31CV7AROC_PROM94, ., 2, ., 3, ., 50.60430.81630.9863yesno
B7JVZ9AROC_CYAP84, ., 2, ., 3, ., 50.70320.81850.9972yesno
Q7V4Y9AROC_PROMM4, ., 2, ., 3, ., 50.58240.81850.9972yesno
Q04XD2AROC_LEPBL4, ., 2, ., 3, ., 50.52770.83670.9710yesno
Q110N5AROC_TRIEI4, ., 2, ., 3, ., 50.68130.81850.9756yesno
B2J1W7AROC_NOSP74, ., 2, ., 3, ., 50.67030.81850.9972yesno
A2BP22AROC_PROMS4, ., 2, ., 3, ., 50.60980.81630.9863yesno
Q7V364AROC_PROMP4, ., 2, ., 3, ., 50.60.81850.9917yesno
B1ZUM3AROC_OPITP4, ., 2, ., 3, ., 50.58950.81400.9889yesno
Q42885AROC2_SOLLC4, ., 2, ., 3, ., 50.79000.95230.9744N/Ano
Q42884AROC1_SOLLC4, ., 2, ., 3, ., 50.79430.95690.9590N/Ano
Q2JLD4AROC_SYNJB4, ., 2, ., 3, ., 50.67490.81400.9497yesno
B3DXL0AROC_METI44, ., 2, ., 3, ., 50.58490.80270.9672yesno
B7KIU0AROC_CYAP74, ., 2, ., 3, ., 50.68970.81170.9889yesno
Q8YYP9AROC_NOSS14, ., 2, ., 3, ., 50.67300.81850.9972yesno
B8HNK4AROC_CYAP44, ., 2, ., 3, ., 50.69230.81630.9944yesno
A2CCA2AROC_PROM34, ., 2, ., 3, ., 50.58240.81850.9972yesno
Q04W40AROC_LEPBJ4, ., 2, ., 3, ., 50.52770.83670.9710yesno
Q3MFM3AROC_ANAVT4, ., 2, ., 3, ., 50.67300.81850.9972yesno
Q3AUR6AROC_SYNS94, ., 2, ., 3, ., 50.60.82080.9945yesno
P46894AROC_PROMA4, ., 2, ., 3, ., 50.58790.81850.9972yesno
Q5N2I0AROC_SYNP64, ., 2, ., 3, ., 50.68400.81850.9972yesno
O74413AROC_SCHPO4, ., 2, ., 3, ., 50.51520.83900.9367yesno
A8G2N2AROC_PROM24, ., 2, ., 3, ., 50.59890.81630.9863yesno
Q2JXD0AROC_SYNJA4, ., 2, ., 3, ., 50.65280.84120.9814yesno
Q72W01AROC_LEPIC4, ., 2, ., 3, ., 50.53290.83670.9710yesno
A5GW34AROC_SYNR34, ., 2, ., 3, ., 50.62040.81170.9944yesno
B1XIM6AROC_SYNP24, ., 2, ., 3, ., 50.66750.82080.9945yesno
B0C2W2AROC_ACAM14, ., 2, ., 3, ., 50.68130.81850.9917yesno
A2BUK4AROC_PROM54, ., 2, ., 3, ., 50.59610.81630.9890yesno
Q8DLM1AROC_THEEB4, ., 2, ., 3, ., 50.69140.81630.9917yesno
Q46HE7AROC_PROMT4, ., 2, ., 3, ., 50.59270.81170.9916yesno
Q6AIP3AROC_DESPS4, ., 2, ., 3, ., 50.54260.81630.9944yesno
B0JWQ2AROC_MICAN4, ., 2, ., 3, ., 50.65560.81630.9836yesno
A2C058AROC_PROM14, ., 2, ., 3, ., 50.60110.81170.9916yesno
P23353AROC_SYNY34, ., 2, ., 3, ., 50.70360.81170.9889N/Ano
Q0ID82AROC_SYNS34, ., 2, ., 3, ., 50.62910.81850.9972yesno
A9BDJ2AROC_PROM44, ., 2, ., 3, ., 50.60710.81850.9944yesno
B2UNJ5AROC_AKKM84, ., 2, ., 3, ., 50.58880.80490.9833yesno
A3PAU4AROC_PROM04, ., 2, ., 3, ., 50.60710.81630.9863yesno
B1WRV7AROC_CYAA54, ., 2, ., 3, ., 50.69500.81850.9944yesno
Q11Y57AROC_CYTH34, ., 2, ., 3, ., 50.55300.80270.9833yesno
P57720AROC_ARATH4, ., 2, ., 3, ., 50.81460.97950.9908yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.998
3rd Layer4.2.3.50.994

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
CS2
RecName- Full=Chorismate synthase; EC=4.2.3.5; (437 aa)
(Populus trichocarpa)
Predicted Functional Partners:
EPSPS
3-phosphoshikimate 1-carboxyvinyltransferase (EC-2.5.1.19) (519 aa)
• •• •• 0.999
DHQS6
SubName- Full=Putative uncharacterized protein; (375 aa)
• ••  • 0.984
SK
Shikimate kinase (175 aa)
• •  •• 0.980
ASB2
anthranilate synthase, beta subunit, ASB2 (EC-4.1.3.27) (240 aa)
• •  •• 0.958
CM1|CM
chorismate mutase (EC-5.4.99.5) (258 aa)
     •• 0.949
CM2
chorismate mutase (EC-5.4.99.5) (255 aa)
     •• 0.949
CM1
chorismate mutase (EC-5.4.99.5) (257 aa)
     •• 0.948
ASB1
anthranilate synthase, beta subunit, ASB1 (EC-4.1.3.27) (276 aa)
• •  •• 0.948
ASA2
anthranilate synthase, alpha subunit 2 (EC-4.1.3.27) (530 aa)
•  • •• 0.944
ASA1
anthranilate synthase, alpha subunit 1 (EC-4.1.3.27) (532 aa)
•  • •• 0.943

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query441
PLN02754413 PLN02754, PLN02754, chorismate synthase 0.0
cd07304344 cd07304, Chorismate_synthase, Chorismase synthase, 0.0
pfam01264346 pfam01264, Chorismate_synt, Chorismate synthase 0.0
PRK05382359 PRK05382, PRK05382, chorismate synthase; Validated 0.0
COG0082369 COG0082, AroC, Chorismate synthase [Amino acid tra 0.0
TIGR00033351 TIGR00033, aroC, chorismate synthase 1e-163
PRK12463390 PRK12463, PRK12463, chorismate synthase; Reviewed 3e-54
>gnl|CDD|215402 PLN02754, PLN02754, chorismate synthase Back     alignment and domain information 
 Score =  809 bits (2092), Expect = 0.0
 Identities = 351/407 (86%), Positives = 373/407 (91%)

Query: 29  RQLPSPNVQILIRSRTPKKLQVKAAGSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLS 88
           R+L S +VQI +RSRT K LQ++AAGS FGTYFRVTTFGESHGGGVGC+IDGCPPRIPL+
Sbjct: 1   RRLSSASVQISLRSRTRKNLQIQAAGSTFGTYFRVTTFGESHGGGVGCVIDGCPPRIPLT 60

Query: 89  EADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSE 148
           E DMQ DLDRRRPGQSRITTPRKETDTC+I SGVSEG+T GTPI VFVPNTDQRG DYSE
Sbjct: 61  EEDMQFDLDRRRPGQSRITTPRKETDTCEILSGVSEGMTLGTPIAVFVPNTDQRGQDYSE 120

Query: 149 MSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYV 208
           MSVAYRPSHADATYD KYGVR+VQGGGRSSARETIGRVA GAVAKKILKQFAGTEILAYV
Sbjct: 121 MSVAYRPSHADATYDFKYGVRAVQGGGRSSARETIGRVAAGAVAKKILKQFAGTEILAYV 180

Query: 209 SQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCI 268
           SQ H+VVLPED+VDHE LTL+Q+ESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCI
Sbjct: 181 SQVHDVVLPEDLVDHETLTLEQIESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCI 240

Query: 269 VRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGN 328
           VRN PRGLGSPVFDKLEAELAKAMMSLPATKGFE+GSGFAGT LTGSEHNDEFY DE G 
Sbjct: 241 VRNVPRGLGSPVFDKLEAELAKAMMSLPATKGFEIGSGFAGTLLTGSEHNDEFYMDEHGR 300

Query: 329 IRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVV 388
           IRTRTNRSGGIQGGISNGEII MRIAFKPTSTIG+KQNTVTR+ +ETEL ARGRHDPCVV
Sbjct: 301 IRTRTNRSGGIQGGISNGEIIVMRIAFKPTSTIGKKQNTVTRDGQETELRARGRHDPCVV 360

Query: 389 PRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQGTMKLPELEPA 435
           PRAVPMVEAMVALVL+DQLMAQ+AQC LFPINP LQ  + +     A
Sbjct: 361 PRAVPMVEAMVALVLVDQLMAQYAQCELFPINPVLQEPLGIASPAAA 407

Length = 413
>gnl|CDD|143612 cd07304, Chorismate_synthase, Chorismase synthase, the enzyme catalyzing the final step of the shikimate pathway Back     alignment and domain information
>gnl|CDD|216398 pfam01264, Chorismate_synt, Chorismate synthase Back     alignment and domain information
>gnl|CDD|235438 PRK05382, PRK05382, chorismate synthase; Validated Back     alignment and domain information
>gnl|CDD|223160 COG0082, AroC, Chorismate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|232792 TIGR00033, aroC, chorismate synthase Back     alignment and domain information
>gnl|CDD|171518 PRK12463, PRK12463, chorismate synthase; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 441
PLN02754413 chorismate synthase 100.0
COG0082369 AroC Chorismate synthase [Amino acid transport and 100.0
PF01264346 Chorismate_synt: Chorismate synthase; InterPro: IP 100.0
TIGR00033351 aroC chorismate synthase. Homotetramer (noted in E 100.0
PRK12463390 chorismate synthase; Reviewed 100.0
PRK05382359 chorismate synthase; Validated 100.0
cd07304344 Chorismate_synthase Chorismase synthase, the enzym 100.0
KOG4492368 consensus Chorismate synthase [Amino acid transpor 100.0
KOG4492368 consensus Chorismate synthase [Amino acid transpor 99.55
>PLN02754 chorismate synthase Back     alignment and domain information 
Probab=100.00  E-value=1.1e-155  Score=1182.81  Aligned_cols=403  Identities=87%  Similarity=1.314  Sum_probs=380.1

Q ss_pred             ccCCCCceeEeecccCCccccccccccccccceEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhhhcCCCCCCCCC
Q 013510           29 RQLPSPNVQILIRSRTPKKLQVKAAGSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITT  108 (441)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~m~ntfG~~~r~ttfGESHG~aig~VIdG~PaGl~i~~e~I~~eL~RRrpG~~r~~t  108 (441)
                      |.+++.+|+++++.+.+++|+++|++||||++|||||||||||++||||||||||||+||+|+||+||+||||||++++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~ntfG~~~r~ttfGESHG~aig~VIdG~PaGl~i~~e~I~~~L~RRrpG~~~~~t   80 (413)
T PLN02754          1 RRLSSASVQISLRSRTRKNLQIQAAGSTFGTYFRVTTFGESHGGGVGCVIDGCPPRIPLTEEDMQFDLDRRRPGQSRITT   80 (413)
T ss_pred             CCccccccceecccccccceeeecccCccccceEEEEEecCCCCeeEEEEcccCCCCEeCHHHHHHHHhccCCCCCCCCc
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCeEEEEecccCCcccCCcEEEEEeCCCCCCCCccccccCCCCCcccccccccccCCCCCCCchhhHHHHHHHHHH
Q 013510          109 PRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAP  188 (441)
Q Consensus       109 ~R~E~D~v~IlSGv~~G~TtGaPIa~~I~N~D~~s~dY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa~rVaA  188 (441)
                      ||+|.|+|+||||||+|+|||+||+++|+|+||+||||+++++.||||||||+|++|||+|||||||||||||||+||||
T Consensus        81 ~R~E~D~veIlSGv~~G~TtGtPIa~~I~N~D~~s~dY~~~~~~pRPGHAD~t~~~KYg~rd~rGGgRsSaReTa~rVaA  160 (413)
T PLN02754         81 PRKETDTCEILSGVSEGMTLGTPIAVFVPNTDQRGQDYSEMSVAYRPSHADATYDFKYGVRAVQGGGRSSARETIGRVAA  160 (413)
T ss_pred             CCCCCCceEEeecccCCCcCCCCeEEEEEcCCCCCCChHHhcCCCCCCCcchhHHHhcCCcccCCccccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCeEEEEEEEEeeceecCCCCCCcccccHhhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEE
Q 013510          189 GAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCI  268 (441)
Q Consensus       189 GaIAk~lL~~~~GI~I~s~v~~IG~i~~~~~~~~~~~~~~~~~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~  268 (441)
                      ||||||||++.+||+|.|||++||+|+.+++..+....++++++++++||||++++++|+++|++||++||||||+|||+
T Consensus       161 GaiAk~lL~~~~GI~I~s~v~~IG~i~~~~~~~~~~~~~~~~~~~~~~rc~d~~~~~~m~~~I~~ak~~GDSlGGivev~  240 (413)
T PLN02754        161 GAVAKKILKQFAGTEILAYVSQVHDVVLPEDLVDHETLTLEQIESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCI  240 (413)
T ss_pred             HHHHHHHHHhhCCeEEEEEEEEEcCEecccccCCcchhhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHcCCCcccEEEEE
Confidence            99999999764699999999999999753211121222367889999999999999999999999999999999999999


Q ss_pred             EEeCCCCcCCcccCchHHHHHHHhccCCcccEEEecccccccccCCCccccceeecCCCceeeccCCCccccccccCCCc
Q 013510          269 VRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEI  348 (441)
Q Consensus       269 ~~gvP~GLG~p~fdkLda~LA~almSIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~p  348 (441)
                      ++|||+|||||+|||||++||+||||||||||||||+||++++|+|||+||+|+++++|+++++|||+|||+||||||||
T Consensus       241 ~~gvP~GLG~pvfdkLda~LA~Al~SIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~~~~~TN~aGGI~GGISnG~p  320 (413)
T PLN02754        241 VRNVPRGLGSPVFDKLEAELAKAMMSLPATKGFEIGSGFAGTLLTGSEHNDEFYMDEHGRIRTRTNRSGGIQGGISNGEI  320 (413)
T ss_pred             EECCCCCCCccccccchHHHHHHhcCcCceeEEEEccchhhhhccccccCcceeecCCCceEecccCCCcccccccCCCc
Confidence            99999999999999999999999999999999999999999999999999999987668899999999999999999999


Q ss_pred             eEEEEEeccCCcccccccccccCCceeeeecCCccccccccchhHHHHHHHHHHHHHHHHHHhcccCccccchhhcCCCC
Q 013510          349 INMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQGTMK  428 (441)
Q Consensus       349 Iv~rva~KPtpSI~k~q~TVd~~~~e~~~~~~gRhDpCivpRA~pVvEAm~AlvLaD~~L~~~~~~~~~~~~~~~~~~~~  428 (441)
                      |+||++|||||||++||+|||++++|++++++||||||++|||+||+|||+||||||++|++++.+....+++.|.+++.
T Consensus       321 Iv~rva~KPtpSI~k~q~TVd~~~~e~~~~~~gRhDpCivprA~pV~EAm~AlvLaD~~L~~~~~~~~~~~~~~~~~~~~  400 (413)
T PLN02754        321 IVMRIAFKPTSTIGKKQNTVTRDGQETELRARGRHDPCVVPRAVPMVEAMVALVLVDQLMAQYAQCELFPINPVLQEPLG  400 (413)
T ss_pred             EEEEEEeCCCcccccccccccCCCCEeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhCccccccCCCccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999997655555666777776


Q ss_pred             CCC
Q 013510          429 LPE  431 (441)
Q Consensus       429 ~~~  431 (441)
                      +..
T Consensus       401 ~~~  403 (413)
T PLN02754        401 IAS  403 (413)
T ss_pred             cCc
Confidence            644

>COG0082 AroC Chorismate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PF01264 Chorismate_synt: Chorismate synthase; InterPro: IPR000453 Chorismate synthase (4 Back     alignment and domain information
>TIGR00033 aroC chorismate synthase Back     alignment and domain information
>PRK12463 chorismate synthase; Reviewed Back     alignment and domain information
>PRK05382 chorismate synthase; Validated Back     alignment and domain information
>cd07304 Chorismate_synthase Chorismase synthase, the enzyme catalyzing the final step of the shikimate pathway Back     alignment and domain information
>KOG4492 consensus Chorismate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4492 consensus Chorismate synthase [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query441
1r52_A382 Crystal Structure Of The Bifunctional Chorismate Sy 2e-99
1um0_A365 Crystal Structure Of Chorismate Synthase Complexed 1e-54
1sq1_A370 Crystal Structure Of The Chorismate Synthase From C 2e-50
1ztb_A401 Crystal Structure Of Chorismate Synthase From Mycob 2e-38
2o11_A407 Mycobacterium Tuberculosis Chorismate Synthase Leng 2e-38
1q1l_A401 Crystal Structure Of Chorismate Synthase Length = 4 5e-38
4ecd_A398 2.5 Angstrom Resolution Crystal Structure Of Bifido 1e-37
1qxo_A388 Crystal Structure Of Chorismate Synthase Complexed 1e-24
>pdb|1R52|A Chain A, Crystal Structure Of The Bifunctional Chorismate Synthase From Saccharomyces Cerevisiae Length = 382 Back     alignment and structure 
Iteration: 1

 Score =  358 bits (920), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 187/367 (50%), Positives = 236/367 (64%), Gaps = 8/367 (2%)
Query: 55  SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETD 114
           S FG  FRVTT+GESH   VGCI+DG PP + L+EAD+Q  L RRRPGQS+++TPR E D
Sbjct: 2   STFGKLFRVTTYGESHCKSVGCIVDGVPPGMSLTEADIQPQLTRRRPGQSKLSTPRDEKD 61
Query: 115 TCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXX 174
             +I SG   G T GTPI + + N DQR HDYS+M    RPSHAD TY  KY        
Sbjct: 62  RVEIQSGTEFGKTLGTPIAMMIKNEDQRPHDYSDMDKFPRPSHADFTYSEKYGIKASSGG 121
Query: 175 XXXXARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEM------LTL 228
               ARETIGRVA GA+A+K L Q +  EI+A+V+Q   + +  D  D E       +T 
Sbjct: 122 GRASARETIGRVASGAIAEKFLAQNSNVEIVAFVTQIGEIKMNRDSFDPEFQHLLNTITR 181
Query: 229 DQVES-NIVRCPDPEYAEKMIAAIDAXXXXXXXXXXXXTCIVRNCPRGLGSPVFDKLEAE 287
           ++V+S   +RCPD   A  M+  I+             TC+VRN P GLG P FDKLEA 
Sbjct: 182 EKVDSMGPIRCPDASVAGLMVKEIEKYRGNKDSIGGVVTCVVRNLPTGLGEPCFDKLEAM 241
Query: 288 LAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTD-EFGNIRTRTNRSGGIQGGISNG 346
           LA AM+S+PA+KGFE+GSGF G  + GS+HND FY + E   +RT+TN SGG+QGGISNG
Sbjct: 242 LAHAMLSIPASKGFEIGSGFQGVSVPGSKHNDPFYFEKETNRLRTKTNNSGGVQGGISNG 301
Query: 347 EIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQ 406
           E I   + FK  +TI ++Q T T + +E  L A+GRHDP V PRA+P+VEAM ALVL D 
Sbjct: 302 ENIYFSVPFKSVATISQEQKTATYDGEEGILAAKGRHDPAVTPRAIPIVEAMTALVLADA 361
Query: 407 LMAQHAQ 413
           L+ Q A+
Sbjct: 362 LLIQKAR 368
>pdb|1UM0|A Chain A, Crystal Structure Of Chorismate Synthase Complexed With Fmn Length = 365 Back     alignment and structure
>pdb|1SQ1|A Chain A, Crystal Structure Of The Chorismate Synthase From Campylobacter Jejuni, Northeast Structural Genomics Target Br19 Length = 370 Back     alignment and structure
>pdb|1ZTB|A Chain A, Crystal Structure Of Chorismate Synthase From Mycobacterium Tuberculosis Length = 401 Back     alignment and structure
>pdb|2O11|A Chain A, Mycobacterium Tuberculosis Chorismate Synthase Length = 407 Back     alignment and structure
>pdb|1Q1L|A Chain A, Crystal Structure Of Chorismate Synthase Length = 401 Back     alignment and structure
>pdb|4ECD|A Chain A, 2.5 Angstrom Resolution Crystal Structure Of Bifidobacterium Longum Chorismate Synthase Length = 398 Back     alignment and structure
>pdb|1QXO|A Chain A, Crystal Structure Of Chorismate Synthase Complexed With Oxidized Fmn And Epsp Length = 388 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query441
1r53_A382 Chorismate synthase; two layers alpha-beta, lyase; 0.0
1sq1_A370 Chorismate synthase; structural genomics, bifuncti 0.0
1um0_A365 Chorismate synthase; beta-alpha-beta sandwich fold 0.0
4ecd_A398 Chorismate synthase; 4-layer sandwich, lyase; 2.50 0.0
2o11_A407 Chorismate synthase; shikimate pathway, LYA; 1.65A 0.0
1q1l_A401 Chorismate synthase; beta alpha beta sandwich, str 0.0
1qxo_A388 Chorismate synthase; beta-alpha-beta, flavoprotein 0.0
>1r53_A Chorismate synthase; two layers alpha-beta, lyase; 2.20A {Saccharomyces cerevisiae} SCOP: d.258.1.1 PDB: 1r52_A Length = 382 Back     alignment and structure
 Score =  667 bits (1723), Expect = 0.0
 Identities = 198/368 (53%), Positives = 248/368 (67%), Gaps = 8/368 (2%)

Query: 55  SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETD 114
           S FG  FRVTT+GESH   VGCI+DG PP + L+EAD+Q  L RRRPGQS+++TPR E D
Sbjct: 2   STFGKLFRVTTYGESHCKSVGCIVDGVPPGMSLTEADIQPQLTRRRPGQSKLSTPRDEKD 61

Query: 115 TCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGG 174
             +I SG   G T GTPI + + N DQR HDYS+M    RPSHAD TY  KYG+++  GG
Sbjct: 62  RVEIQSGTEFGKTLGTPIAMMIKNEDQRPHDYSDMDKFPRPSHADFTYSEKYGIKASSGG 121

Query: 175 GRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQ---- 230
           GR+SARETIGRVA GA+A+K L Q +  EI+A+V+Q   + +  D  D E   L      
Sbjct: 122 GRASARETIGRVASGAIAEKFLAQNSNVEIVAFVTQIGEIKMNRDSFDPEFQHLLNTITR 181

Query: 231 ---VESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAE 287
                   +RCPD   A  M+  I+  R   DS+GGVVTC+VRN P GLG P FDKLEA 
Sbjct: 182 EKVDSMGPIRCPDASVAGLMVKEIEKYRGNKDSIGGVVTCVVRNLPTGLGEPCFDKLEAM 241

Query: 288 LAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTD-EFGNIRTRTNRSGGIQGGISNG 346
           LA AM+S+PA+KGFE+GSGF G  + GS+HND FY + E   +RT+TN SGG+QGGISNG
Sbjct: 242 LAHAMLSIPASKGFEIGSGFQGVSVPGSKHNDPFYFEKETNRLRTKTNNSGGVQGGISNG 301

Query: 347 EIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQ 406
           E I   + FK  +TI ++Q T T + +E  L A+GRHDP V PRA+P+VEAM ALVL D 
Sbjct: 302 ENIYFSVPFKSVATISQEQKTATYDGEEGILAAKGRHDPAVTPRAIPIVEAMTALVLADA 361

Query: 407 LMAQHAQC 414
           L+ Q A+ 
Sbjct: 362 LLIQKARD 369
>1sq1_A Chorismate synthase; structural genomics, bifunctional alpha/beta tetrameric PROT protein structure initiative; 2.80A {Campylobacter jejuni} SCOP: d.258.1.1 Length = 370 Back     alignment and structure
>1um0_A Chorismate synthase; beta-alpha-beta sandwich fold, lyase; HET: FMN; 1.95A {Helicobacter pylori} SCOP: d.258.1.1 PDB: 1umf_A Length = 365 Back     alignment and structure
>4ecd_A Chorismate synthase; 4-layer sandwich, lyase; 2.50A {Bifidobacterium longum subsp} Length = 398 Back     alignment and structure
>2o11_A Chorismate synthase; shikimate pathway, LYA; 1.65A {Mycobacterium tuberculosis} PDB: 2o12_A* 2qhf_A 2g85_A 1ztb_A Length = 407 Back     alignment and structure
>1q1l_A Chorismate synthase; beta alpha beta sandwich, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.05A {Aquifex aeolicus} SCOP: d.258.1.1 Length = 401 Back     alignment and structure
>1qxo_A Chorismate synthase; beta-alpha-beta, flavoprotein, shikimate, anti-infective, lyase; HET: FMN EPS; 2.00A {Streptococcus pneumoniae} SCOP: d.258.1.1 Length = 388 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query441
1r53_A382 Chorismate synthase; two layers alpha-beta, lyase; 100.0
1um0_A365 Chorismate synthase; beta-alpha-beta sandwich fold 100.0
1sq1_A370 Chorismate synthase; structural genomics, bifuncti 100.0
4ecd_A398 Chorismate synthase; 4-layer sandwich, lyase; 2.50 100.0
1qxo_A388 Chorismate synthase; beta-alpha-beta, flavoprotein 100.0
2o11_A407 Chorismate synthase; shikimate pathway, LYA; 1.65A 100.0
1q1l_A401 Chorismate synthase; beta alpha beta sandwich, str 100.0
>1r53_A Chorismate synthase; two layers alpha-beta, lyase; 2.20A {Saccharomyces cerevisiae} SCOP: d.258.1.1 PDB: 1r52_A Back     alignment and structure
Probab=100.00  E-value=7.1e-153  Score=1152.80  Aligned_cols=364  Identities=54%  Similarity=0.866  Sum_probs=266.3

Q ss_pred             ccccccceEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhhhcCCCCCCCCCCCCCCCeEEEEecccCCcccCCcEE
Q 013510           54 GSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIH  133 (441)
Q Consensus        54 ~ntfG~~~r~ttfGESHG~aig~VIdG~PaGl~i~~e~I~~eL~RRrpG~~r~~t~R~E~D~v~IlSGv~~G~TtGaPIa  133 (441)
                      +||||++|||||||||||++||||||||||||+||+||||.||+||||||++++|||+|+|+|+||||||+|+||||||+
T Consensus         1 gntfG~~fr~tT~GESHG~alg~vIdG~PaGl~l~~~dIq~~L~RRrpG~~r~~t~R~E~D~v~IlSGv~~G~TtGtPI~   80 (382)
T 1r53_A            1 MSTFGKLFRVTTYGESHCKSVGCIVDGVPPGMSLTEADIQPQLTRRRPGQSKLSTPRDEKDRVEIQSGTEFGKTLGTPIA   80 (382)
T ss_dssp             CCEECSSSEEEEECCTTSSEEEEEEECCCTTCBCCGGGTHHHHHTTCC------------CCCEECSSEETTEECSSCEE
T ss_pred             CCcCcceeEEEecccCCCCeeEEEEecCCCCCccCHHHHHHHHHhhCCCCCCCCCCCCCCCeeEEeecccCCccCCCCeE
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCCCccccccCCCCCcccccccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEEEeec
Q 013510          134 VFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHN  213 (441)
Q Consensus       134 ~~I~N~D~~s~dY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa~rVaAGaIAk~lL~~~~GI~I~s~v~~IG~  213 (441)
                      ++|+|+||+|+||+++++.||||||||||++|||+|||||||||||||||+||||||||||||++.+||+|.|||++||+
T Consensus        81 ~~I~N~D~~s~dy~~~~~~~RPGHAD~t~~~KYG~rD~RgggRsSaRETa~RVAaGAiAk~~L~~~~GI~i~a~v~~iG~  160 (382)
T 1r53_A           81 MMIKNEDQRPHDYSDMDKFPRPSHADFTYSEKYGIKASSGGGRASARETIGRVASGAIAEKFLAQNSNVEIVAFVTQIGE  160 (382)
T ss_dssp             EEEEC-----------------------------------------CCCHHHHHHHHHHHHHHHHTTCCEEEEEEEEETT
T ss_pred             EEEecCCCCCCchhhccCCCCCCccchhhhhhcCCccccCcchhhHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEEEcC
Confidence            99999999999999999999999999999999999999999999999999999999999999998669999999999999


Q ss_pred             eecCCCCC------CcccccHhhhhcCc-CCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEEeCCCCcCCcccCchHH
Q 013510          214 VVLPEDVV------DHEMLTLDQVESNI-VRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEA  286 (441)
Q Consensus       214 i~~~~~~~------~~~~~~~~~~~~~~-vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~~~gvP~GLG~p~fdkLda  286 (441)
                      |+......      .....+++++++|+ |||||++++++|+++|+++|++||||||+|||+|+|||+|||||+|||||+
T Consensus       161 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cpd~~~~~~m~~~I~~ak~~GDS~GGvvevv~~gvP~GLG~pvfdkLda  240 (382)
T 1r53_A          161 IKMNRDSFDPEFQHLLNTITREKVDSMGPIRCPDASVAGLMVKEIEKYRGNKDSIGGVVTCVVRNLPTGLGEPCFDKLEA  240 (382)
T ss_dssp             EECCCCTTCHHHHHHHHHCCHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHTTCCCCEEEEEEEESCCTTCSBTTTBCHHH
T ss_pred             EecccccccccccccccccCHHHHhcCCCccCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEecCCCCCCCcccccchH
Confidence            98642100      00134578899999 999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCCcccEEEecccccccccCCCccccceeecCC-CceeeccCCCccccccccCCCceEEEEEeccCCcccccc
Q 013510          287 ELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEF-GNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQ  365 (441)
Q Consensus       287 ~LA~almSIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~-g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~k~q  365 (441)
                      +||+||||||||||||||+||++++|+|||+||+|+..++ |+++|+|||+|||+|||||||||+||+||||||||++||
T Consensus       241 ~LA~A~mSI~AvKGvEiG~GF~~a~~~GSe~nD~~~~~~~~g~~~~~TN~aGGI~GGISnG~pIv~r~a~KPt~SI~~~q  320 (382)
T 1r53_A          241 MLAHAMLSIPASKGFEIGSGFQGVSVPGSKHNDPFYFEKETNRLRTKTNNSGGVQGGISNGENIYFSVPFKSVATISQEQ  320 (382)
T ss_dssp             HHHHHHHTSTTBCCCEETTTTGGGGSCHHHHHCSBC--------CBCCCCSCSEETTEECSSCEEEEEEECCC-------
T ss_pred             HHHHHhcCccceeEEEeccchhhhhccccccccceeccccCCceeecCcCccCccccccCCCeEEEEEEECCcccccccc
Confidence            9999999999999999999999999999999999974321 579999999999999999999999999999999999999


Q ss_pred             cccccCCceeeeecCCccccccccchhHHHHHHHHHHHHHHHHHHhcccCcc
Q 013510          366 NTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLF  417 (441)
Q Consensus       366 ~TVd~~~~e~~~~~~gRhDpCivpRA~pVvEAm~AlvLaD~~L~~~~~~~~~  417 (441)
                      +|||+++++++++++||||||++|||+||+|||+||||||++|++++++...
T Consensus       321 ~TVd~~~~~~~~~~~gRhDpCvvprA~pV~EAm~AlvLaD~~L~~~~~~~~~  372 (382)
T 1r53_A          321 KTATYDGEEGILAAKGRHDPAVTPRAIPIVEAMTALVLADALLIQKARDFSR  372 (382)
T ss_dssp             ----------------CCCSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             cccccccCcchhhccCCCCcccccchHHHHHHHHHHHHHHHHHHHhhhccCc
Confidence            9999999999999999999999999999999999999999999999876543
>1um0_A Chorismate synthase; beta-alpha-beta sandwich fold, lyase; HET: FMN; 1.95A {Helicobacter pylori} SCOP: d.258.1.1 PDB: 1umf_A Back     alignment and structure
>1sq1_A Chorismate synthase; structural genomics, bifunctional alpha/beta tetrameric PROT protein structure initiative; 2.80A {Campylobacter jejuni} SCOP: d.258.1.1 Back     alignment and structure
>4ecd_A Chorismate synthase; 4-layer sandwich, lyase; 2.50A {Bifidobacterium longum subsp} Back     alignment and structure
>1qxo_A Chorismate synthase; beta-alpha-beta, flavoprotein, shikimate, anti-infective, lyase; HET: FMN EPS; 2.00A {Streptococcus pneumoniae} SCOP: d.258.1.1 Back     alignment and structure
>2o11_A Chorismate synthase; shikimate pathway, LYA; 1.65A {Mycobacterium tuberculosis} PDB: 2o12_A* 2qhf_A 2g85_A 1ztb_A Back     alignment and structure
>1q1l_A Chorismate synthase; beta alpha beta sandwich, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.05A {Aquifex aeolicus} SCOP: d.258.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 441
d1r53a_371 d.258.1.1 (A:) Chorismate synthase, AroC {Baker's 1e-146
d1q1la_397 d.258.1.1 (A:) Chorismate synthase, AroC {Aquifex 1e-138
d1qxoa_388 d.258.1.1 (A:) Chorismate synthase, AroC {Streptoc 1e-135
d1sq1a_360 d.258.1.1 (A:) Chorismate synthase, AroC {Campylob 1e-134
d1um0a_365 d.258.1.1 (A:) Chorismate synthase, AroC {Helicoba 1e-134
>d1r53a_ d.258.1.1 (A:) Chorismate synthase, AroC {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 371 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Chorismate synthase, AroC
superfamily: Chorismate synthase, AroC
family: Chorismate synthase, AroC
domain: Chorismate synthase, AroC
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  419 bits (1079), Expect = e-146
 Identities = 199/368 (54%), Positives = 254/368 (69%), Gaps = 8/368 (2%)

Query: 55  SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETD 114
           S FG  FRVTT+GESH   VGCI+DG PP + L+EAD+Q  L RRRPGQS+++TPR E D
Sbjct: 2   STFGKLFRVTTYGESHCKSVGCIVDGVPPGMSLTEADIQPQLTRRRPGQSKLSTPRDEKD 61

Query: 115 TCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGG 174
             +I SG   G T GTPI + + N DQR HDYS+M    RPSHAD TY  KYG+++  GG
Sbjct: 62  RVEIQSGTEFGKTLGTPIAMMIKNEDQRPHDYSDMDKFPRPSHADFTYSEKYGIKASSGG 121

Query: 175 GRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEM------LTL 228
           GR+SARETIGRVA GA+A+K L Q +  EI+A+V+Q   + +  D  D E       +T 
Sbjct: 122 GRASARETIGRVASGAIAEKFLAQNSNVEIVAFVTQIGEIKMNRDSFDPEFQHLLNTITR 181

Query: 229 DQVES-NIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAE 287
           ++V+S   +RCPD   A  M+  I+  R   DS+GGVVTC+VRN P GLG P FDKLEA 
Sbjct: 182 EKVDSMGPIRCPDASVAGLMVKEIEKYRGNKDSIGGVVTCVVRNLPTGLGEPCFDKLEAM 241

Query: 288 LAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEF-GNIRTRTNRSGGIQGGISNG 346
           LA AM+S+PA+KGFE+GSGF G  + GS+HND FY ++    +RT+TN SGG+QGGISNG
Sbjct: 242 LAHAMLSIPASKGFEIGSGFQGVSVPGSKHNDPFYFEKETNRLRTKTNNSGGVQGGISNG 301

Query: 347 EIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQ 406
           E I   + FK  +TI ++Q T T + +E  L A+GRHDP V PRA+P+VEAM ALVL D 
Sbjct: 302 ENIYFSVPFKSVATISQEQKTATYDGEEGILAAKGRHDPAVTPRAIPIVEAMTALVLADA 361

Query: 407 LMAQHAQC 414
           L+ Q A+ 
Sbjct: 362 LLIQKARD 369
>d1q1la_ d.258.1.1 (A:) Chorismate synthase, AroC {Aquifex aeolicus [TaxId: 63363]} Length = 397 Back     information, alignment and structure
>d1qxoa_ d.258.1.1 (A:) Chorismate synthase, AroC {Streptococcus pneumoniae [TaxId: 1313]} Length = 388 Back     information, alignment and structure
>d1sq1a_ d.258.1.1 (A:) Chorismate synthase, AroC {Campylobacter jejuni [TaxId: 197]} Length = 360 Back     information, alignment and structure
>d1um0a_ d.258.1.1 (A:) Chorismate synthase, AroC {Helicobacter pylori [TaxId: 210]} Length = 365 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query441
d1um0a_365 Chorismate synthase, AroC {Helicobacter pylori [Ta 100.0
d1sq1a_360 Chorismate synthase, AroC {Campylobacter jejuni [T 100.0
d1r53a_371 Chorismate synthase, AroC {Baker's yeast (Saccharo 100.0
d1qxoa_388 Chorismate synthase, AroC {Streptococcus pneumonia 100.0
d1q1la_397 Chorismate synthase, AroC {Aquifex aeolicus [TaxId 100.0
d1qxoa_388 Chorismate synthase, AroC {Streptococcus pneumonia 80.62
>d1um0a_ d.258.1.1 (A:) Chorismate synthase, AroC {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Chorismate synthase, AroC
superfamily: Chorismate synthase, AroC
family: Chorismate synthase, AroC
domain: Chorismate synthase, AroC
species: Helicobacter pylori [TaxId: 210]

Probab=100.00  E-value=4.6e-148  Score=1115.30  Aligned_cols=358  Identities=38%  Similarity=0.606  Sum_probs=346.9

Q ss_pred             cccccceEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhhhcCCCCCCCCCCCCCCCeEEEEecccCCcccCCcEEE
Q 013510           55 SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV  134 (441)
Q Consensus        55 ntfG~~~r~ttfGESHG~aig~VIdG~PaGl~i~~e~I~~eL~RRrpG~~r~~t~R~E~D~v~IlSGv~~G~TtGaPIa~  134 (441)
                      ||||++|||||||||||++||||||||||||+||+|+||+||+||||||++++|||+|+|+|+||||||+|+|||+||++
T Consensus         2 ns~G~~~r~tt~GESHG~~ig~vIdG~PaGl~i~~e~I~~~L~RR~pG~~~~~t~R~E~D~veilSGv~~G~TtG~PI~~   81 (365)
T d1um0a_           2 NTLGRFLRLTTFGESHGDVIGGVLDGMPSGIKIDYALLENEMKRRQGGRNVFITPRKEDDKVEITSGVFEDFSTGTPIGF   81 (365)
T ss_dssp             CEECSSSEEEECCSCCSSEEEEEEECCCBTCBCCHHHHHHHHHHHTTCCSSCCCHHHHSCEEEECSSEETTEECSSCEEE
T ss_pred             CCcccceEEEeeecCCCCeeEEEEeccCcCCEeCHHHHHHHHhcCCCCCCCCCccCCCCCeEEEeeCeeCCeecCCccee
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCCCccccccCCCCCcccccccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEEEeece
Q 013510          135 FVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNV  214 (441)
Q Consensus       135 ~I~N~D~~s~dY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa~rVaAGaIAk~lL~~~~GI~I~s~v~~IG~i  214 (441)
                      +|+|+|++|+||+++++.||||||||+|++|||++|+||||||||||||+||||||||||||++ +||+|.+||++||.+
T Consensus        82 ~I~N~d~~s~dy~~~~~~pRPGHAD~~~~~KYg~~D~RgggRsSaReTa~rVaaGaiAk~lL~~-~gI~v~~~v~~IG~i  160 (365)
T d1um0a_          82 LIHNQRARSKDYDNIKNLFRPSHADFTYFHKYGIRDFRGGGRSSARESAIRVAAGAFAKMLLRE-IGIVCESGIIEIGGI  160 (365)
T ss_dssp             EEECCCSCCCCCCCCTTBCCTTSTHHHHHHHHCCCCCCCTTCSTHHHHHHHHHHHHHHHHHHHH-TTEEEEEEEEEETTE
T ss_pred             eecccccCccchhhhhccCCCCCcchhhhccCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHh-cCceEEEEEEecccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999 699999999999999


Q ss_pred             ecCCCCCCcccccHhhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEEeC------CCCcCCcccCchHHHH
Q 013510          215 VLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNC------PRGLGSPVFDKLEAEL  288 (441)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~~~gv------P~GLG~p~fdkLda~L  288 (441)
                      ..+       ..+++.++.++++|+|++++++|+++|++||++||||||+|||+++||      |+|||+|+|||||++|
T Consensus       161 ~~~-------~~~~~~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSvGG~ve~~~~gv~~~~g~P~GlG~P~f~kLda~L  233 (365)
T d1um0a_         161 KAK-------NYDFNHALKSEIFALDEEQEEAQKTAIQNAIKNHDSIGGVALIRARSIKTNQKLPIGLGQGLYAKLDAKI  233 (365)
T ss_dssp             ECS-------SCCHHHHHHSTTCBSCHHHHHHHHHHHHHHHHTTCCBCEEEEEEEEESSTTCCCCSCCSBTTTBCHHHHH
T ss_pred             ccc-------ccchhhhcccccccCChhhHHHHHHHHHHHHhcCCCcCceEEEEEecccccccCCcccCCCcccchhhHH
Confidence            864       244677899999999999999999999999999999999999999996      9999999999999999


Q ss_pred             HHHhccCCcccEEEecccccccccCCCccccceeecCCCceeeccCCCccccccccCCCceEEEEEeccCCccccccccc
Q 013510          289 AKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTV  368 (441)
Q Consensus       289 A~almSIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~k~q~TV  368 (441)
                      |+||||||||||||||+||+++.|+|||+||+|..+     .+.|||+|||+|||||||||+||++|||||||.+||+||
T Consensus       234 A~A~mSIpAvKgVE~G~Gf~~a~~~GSe~nD~~~~~-----~~~tN~aGGi~GGiSnG~pI~~rva~KP~sSI~~pq~Tv  308 (365)
T d1um0a_         234 AEAMMGLNGVKAVEIGKGVESSLLKGSEYNDLMDQK-----GFLSNRSGGVLGGMSNGEEIIVRVHFKPTPSIFQPQRTI  308 (365)
T ss_dssp             HHHHHTSTTEEEEEETTGGGGGGSBHHHHCCCEETT-----EESCCTTTTEETTEECSSCEEEEEEECCCSCCSSCEEEE
T ss_pred             HHHHhcccceeeeeeccchhhhhccHhhhcCcccCC-----CCcccCCCceecCcCCCCceEEEEEeCCCcccCCcccce
Confidence            999999999999999999999999999999998632     267999999999999999999999999999999999999


Q ss_pred             ccCCceeeeecCCccccccccchhHHHHHHHHHHHHHHHHHHhcccCccccchhhcCC
Q 013510          369 TREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQGT  426 (441)
Q Consensus       369 d~~~~e~~~~~~gRhDpCivpRA~pVvEAm~AlvLaD~~L~~~~~~~~~~~~~~~~~~  426 (441)
                      |++++|++++++||||||++|||+||+|||+||||||++|++++ +++++||++|.|.
T Consensus       309 d~~~~e~~~~~~gRhDpCivprA~~V~EAm~alvlaD~~L~~~~-~~~~~~k~~~~~~  365 (365)
T d1um0a_         309 DINGNECECLLKGRHDPCIAIRGSVVCESLLALVLADMVLLNLT-SKIEYLKTIYNEN  365 (365)
T ss_dssp             BTTSCEEEECCCSCCCSCTHHHHHHHHHHHHHHHHHHHHHHGGG-SBHHHHHHHHTTC
T ss_pred             ECCCCEEEeeecCCCCCcCccccHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999995 7999999999874
>d1sq1a_ d.258.1.1 (A:) Chorismate synthase, AroC {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1r53a_ d.258.1.1 (A:) Chorismate synthase, AroC {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qxoa_ d.258.1.1 (A:) Chorismate synthase, AroC {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1q1la_ d.258.1.1 (A:) Chorismate synthase, AroC {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1qxoa_ d.258.1.1 (A:) Chorismate synthase, AroC {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure